Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 155 of 349
Found at i:49983688 original size:26 final size:26
Alignment explanation
Indices: 49983659--49983767 Score: 209
Period size: 26 Copynumber: 4.2 Consensus size: 26
49983649 TGATACAAAT
49983659 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
49983685 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
49983711 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
49983737 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
49983763 TGATA
1 TGATA
49983768 GGAATTTCAT
Statistics
Matches: 81, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 81 1.00
ACGTcount: A:0.31, C:0.06, G:0.27, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:49985279 original size:26 final size:26
Alignment explanation
Indices: 49985250--49985302 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
49985240 TTTACAGTTT
49985250 TACCCCTAGTATATAAATT-ACCGAAA
1 TACCCCTAGTAT-TAAATTGACCGAAA
* *
49985276 TACCCCTAGTGTTAAATTGACCTAAA
1 TACCCCTAGTATTAAATTGACCGAAA
49985302 T
1 T
49985303 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 6 0.25
26 18 0.75
ACGTcount: A:0.38, C:0.23, G:0.09, T:0.30
Consensus pattern (26 bp):
TACCCCTAGTATTAAATTGACCGAAA
Found at i:49988359 original size:27 final size:27
Alignment explanation
Indices: 49988329--49988405 Score: 67
Period size: 27 Copynumber: 3.1 Consensus size: 27
49988319 GTTACATTGA
49988329 TTTGGCTTCAAGCCATGATATTGGCAC
1 TTTGGCTTCAAGCCATGATATTGGCAC
* * * *
49988356 TTTGGGTGCAAG---TTACATT-G-A-
1 TTTGGCTTCAAGCCATGATATTGGCAC
*
49988377 TTTGGCTTCAGGCCATGATATTGGCAC
1 TTTGGCTTCAAGCCATGATATTGGCAC
49988404 TT
1 TT
49988406 CGGGTGTGAG
Statistics
Matches: 35, Mismatches: 9, Indels: 12
0.62 0.16 0.21
Matches are distributed among these distances:
21 9 0.26
22 1 0.03
23 1 0.03
24 10 0.29
25 1 0.03
26 1 0.03
27 12 0.34
ACGTcount: A:0.21, C:0.18, G:0.25, T:0.36
Consensus pattern (27 bp):
TTTGGCTTCAAGCCATGATATTGGCAC
Found at i:49988370 original size:48 final size:48
Alignment explanation
Indices: 49988318--49988460 Score: 207
Period size: 48 Copynumber: 3.0 Consensus size: 48
49988308 TGCCATTAGG
* *
49988318 AGTTACATTGATTTGGCTTCAAGCCATGATATTGGCACTTTGGGTGCA
1 AGTTACATTGATTTGGCTTCAGGCCATGATATTGGCACTTAGGGTGCA
* **
49988366 AGTTACATTGATTTGGCTTCAGGCCATGATATTGGCACTTCGGGTGTG
1 AGTTACATTGATTTGGCTTCAGGCCATGATATTGGCACTTAGGGTGCA
* *
49988414 AGTTACACTGATTTGGCTTC-GGACCATGATAATGGCACTTAGGGTGC
1 AGTTACATTGATTTGGCTTCAGG-CCATGATATTGGCACTTAGGGTGC
49988461 GAGACTTCTA
Statistics
Matches: 86, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
47 2 0.02
48 84 0.98
ACGTcount: A:0.22, C:0.17, G:0.27, T:0.34
Consensus pattern (48 bp):
AGTTACATTGATTTGGCTTCAGGCCATGATATTGGCACTTAGGGTGCA
Found at i:49990804 original size:28 final size:28
Alignment explanation
Indices: 49990772--49990889 Score: 155
Period size: 28 Copynumber: 4.2 Consensus size: 28
49990762 TGGGAATTAG
* *
49990772 TTGGGCCTGATGGGCCATAAGAATGTGG
1 TTGGGCCTGATGGGCCATATGAATGTGA
* *
49990800 TTGGGCCTGATGGGTCATGTGAATGTGA
1 TTGGGCCTGATGGGCCATATGAATGTGA
* *
49990828 TTGGGCCTAATGGGCCATATGAATGTAA
1 TTGGGCCTGATGGGCCATATGAATGTGA
* * *
49990856 TTGGGCCTGATGGGCCATGTGAACGAGA
1 TTGGGCCTGATGGGCCATATGAATGTGA
49990884 TTGGGC
1 TTGGGC
49990890 TTAAAGGGGC
Statistics
Matches: 77, Mismatches: 13, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 77 1.00
ACGTcount: A:0.21, C:0.14, G:0.37, T:0.27
Consensus pattern (28 bp):
TTGGGCCTGATGGGCCATATGAATGTGA
Found at i:49990841 original size:56 final size:56
Alignment explanation
Indices: 49990772--49990889 Score: 173
Period size: 56 Copynumber: 2.1 Consensus size: 56
49990762 TGGGAATTAG
* ** * * *
49990772 TTGGGCCTGATGGGCCATAAGAATGTGGTTGGGCCTGATGGGTCATGTGAATGTGA
1 TTGGGCCTAATGGGCCATAAGAATGTAATTGGGCCTGATGGGCCATGTGAACGAGA
*
49990828 TTGGGCCTAATGGGCCATATGAATGTAATTGGGCCTGATGGGCCATGTGAACGAGA
1 TTGGGCCTAATGGGCCATAAGAATGTAATTGGGCCTGATGGGCCATGTGAACGAGA
49990884 TTGGGC
1 TTGGGC
49990890 TTAAAGGGGC
Statistics
Matches: 55, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
56 55 1.00
ACGTcount: A:0.21, C:0.14, G:0.37, T:0.27
Consensus pattern (56 bp):
TTGGGCCTAATGGGCCATAAGAATGTAATTGGGCCTGATGGGCCATGTGAACGAGA
Found at i:49991248 original size:27 final size:27
Alignment explanation
Indices: 49991207--49991431 Score: 192
Period size: 27 Copynumber: 8.3 Consensus size: 27
49991197 ATAATAAAGA
* *
49991207 GAAATTACCCCCGATTTGTAGAATTACC
1 GAAA-TACCCTCGATTTGTAAAATTACC
*
49991235 GAAATACCCTCGATTTGTAAAATTATC
1 GAAATACCCTCGATTTGTAAAATTACC
* *
49991262 G-AATACCC-CTGATTCGTAAAATTATC
1 GAAATACCCTC-GATTTGTAAAATTACC
*
49991288 GAAATACCC-CTGATTTATAAAATTACC
1 GAAATACCCTC-GATTTGTAAAATTACC
* * * *
49991315 AAAATACCCTTG-TAGTGTAGAATTACC
1 GAAATACCCTCGAT-TTGTAAAATTACC
* *
49991342 GAAATACCTTTGATTTGTAAAATTACC
1 GAAATACCCTCGATTTGTAAAATTACC
* *
49991369 -AATATACCTTCGATTTGTAAAATCACC
1 GAA-ATACCCTCGATTTGTAAAATTACC
* * *
49991396 GAAATACCCTTG-TAGTGTAAAATGACC
1 GAAATACCCTCGAT-TTGTAAAATTACC
*
49991423 GACATACCC
1 GAAATACCC
49991432 CTATAAGGTA
Statistics
Matches: 166, Mismatches: 23, Indels: 17
0.81 0.11 0.08
Matches are distributed among these distances:
25 1 0.01
26 27 0.16
27 131 0.79
28 7 0.04
ACGTcount: A:0.36, C:0.21, G:0.12, T:0.30
Consensus pattern (27 bp):
GAAATACCCTCGATTTGTAAAATTACC
Found at i:49991442 original size:27 final size:27
Alignment explanation
Indices: 49991384--49991448 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
49991374 ACCTTCGATT
* * *
49991384 TGTAAAATCACCGAAATACCCTTGTAG
1 TGTAAAATGACCGAAATACCCCTATAG
*
49991411 TGTAAAATGACCGACATACCCCTATAAG
1 TGTAAAATGACCGAAATACCCCTAT-AG
49991439 -GTAAAATGAC
1 TGTAAAATGAC
49991449 TGTTTTGCCC
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
27 31 0.94
28 2 0.06
ACGTcount: A:0.40, C:0.22, G:0.15, T:0.23
Consensus pattern (27 bp):
TGTAAAATGACCGAAATACCCCTATAG
Found at i:49991445 original size:81 final size:79
Alignment explanation
Indices: 49991215--49991433 Score: 244
Period size: 81 Copynumber: 2.7 Consensus size: 79
49991205 GAGAAATTAC
* * * *
49991215 CCCCGATTTGTAGAATTACCGAAATACCCTCG-ATTTGTAAAATTATCGAATACCCCTGATTCGT
1 CCCCGATTTGTAAAATTACCGAAATACCCTTGTA-GTGTAAAATTACCGAATACCCCTGATTCGT
*
49991279 AAAATTATCGAAATA
65 AAAATTATCCAAATA
* * * ** *
49991294 CCCCTGATTTATAAAATTACCAAAATACCCTTGTAGTGTAGAATTACCGAAATACCTTTGATTTG
1 CCCC-GATTTGTAAAATTACCGAAATACCCTTGTAGTGTAAAATTACCG-AATACCCCTGATTCG
49991359 TAAAATTA-CCAATATA
64 TAAAATTATCCAA-ATA
* * *
49991375 CCTTCGATTTGTAAAATCACCGAAATACCCTTGTAGTGTAAAATGACCGACATACCCCT
1 CC-CCGATTTGTAAAATTACCGAAATACCCTTGTAGTGTAAAATTACCGA-ATACCCCT
49991434 ATAAGGTAAA
Statistics
Matches: 115, Mismatches: 19, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
79 4 0.03
80 39 0.34
81 71 0.62
82 1 0.01
ACGTcount: A:0.36, C:0.22, G:0.12, T:0.31
Consensus pattern (79 bp):
CCCCGATTTGTAAAATTACCGAAATACCCTTGTAGTGTAAAATTACCGAATACCCCTGATTCGTA
AAATTATCCAAATA
Found at i:49992015 original size:27 final size:26
Alignment explanation
Indices: 49991959--49992026 Score: 66
Period size: 27 Copynumber: 2.5 Consensus size: 26
49991949 TATGCCTAAG
* *
49991959 ATGGGCTAGGCCCAATTGATTCTGTT
1 ATGGGCTAGGCCCAAATGATTCTGTA
*
49991985 ATGGGCTATGTCCCAAATGATAT-TGTA
1 ATGGGCTA-GGCCCAAATGAT-TCTGTA
*
49992012 ATGGGCGTTGGCCCA
1 ATGGGC-TAGGCCCA
49992027 CGTATGCTCT
Statistics
Matches: 34, Mismatches: 5, Indels: 5
0.77 0.11 0.11
Matches are distributed among these distances:
26 8 0.24
27 24 0.71
28 2 0.06
ACGTcount: A:0.22, C:0.19, G:0.28, T:0.31
Consensus pattern (26 bp):
ATGGGCTAGGCCCAAATGATTCTGTA
Found at i:49994386 original size:28 final size:28
Alignment explanation
Indices: 49994301--49994390 Score: 144
Period size: 28 Copynumber: 3.2 Consensus size: 28
49994291 TGGCAAGTAG
*
49994301 TTGGGCCTGATGGGCCATATGAATGTGG
1 TTGGGCCTGATGGGCCATATGAATGTGA
49994329 TTGGGCCTGATGGGCCATATGAATGTGA
1 TTGGGCCTGATGGGCCATATGAATGTGA
* * *
49994357 TTGGGCCTGATGGGCCATGTGAACGAGA
1 TTGGGCCTGATGGGCCATATGAATGTGA
49994385 TTGGGC
1 TTGGGC
49994391 TTAAAGGGGC
Statistics
Matches: 58, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 58 1.00
ACGTcount: A:0.19, C:0.16, G:0.39, T:0.27
Consensus pattern (28 bp):
TTGGGCCTGATGGGCCATATGAATGTGA
Found at i:49994755 original size:27 final size:27
Alignment explanation
Indices: 49994725--49994934 Score: 198
Period size: 27 Copynumber: 7.8 Consensus size: 27
49994715 CCCCCGACTG
49994725 GTAAAATTATCGAAATACCCTCGATTT
1 GTAAAATTATCGAAATACCCTCGATTT
49994752 GTAAAATTATCGAAATA-CCTCTGATTT
1 GTAAAATTATCGAAATACCCTC-GATTT
49994779 GTAAAATTA-CTGAAATACCC-CTGATTT
1 GTAAAATTATC-GAAATACCCTC-GATTT
* * *
49994806 GTAAAATTACCGAAATACCCTTG-TAGT
1 GTAAAATTATCGAAATACCCTCGAT-TT
* * * * *
49994833 GTAGAATTATTGAAATGCCTTCTATTT
1 GTAAAATTATCGAAATACCCTCGATTT
* *
49994860 GTAAAATTACCGAAATACCATCGATTT
1 GTAAAATTATCGAAATACCCTCGATTT
* * *
49994887 GTAAAATTA-CTAAAATACCCT-TATAGT
1 GTAAAATTATC-GAAATACCCTCGAT-TT
*
49994914 GTAAAATTATCAAAATACCCT
1 GTAAAATTATCGAAATACCCT
49994935 TGTGTAAAAT
Statistics
Matches: 153, Mismatches: 20, Indels: 20
0.79 0.10 0.10
Matches are distributed among these distances:
26 9 0.06
27 139 0.91
28 5 0.03
ACGTcount: A:0.39, C:0.17, G:0.11, T:0.34
Consensus pattern (27 bp):
GTAAAATTATCGAAATACCCTCGATTT
Found at i:49994860 original size:81 final size:81
Alignment explanation
Indices: 49994725--49994932 Score: 260
Period size: 81 Copynumber: 2.6 Consensus size: 81
49994715 CCCCCGACTG
* * *
49994725 GTAAAATTATCGAAATACCCTCG-ATTTGTAAAATTATCGAAATACCTCTGATTTGTAAAATTAC
1 GTAAAATTACCGAAATACCCTTGTA-GTGTAAAATTATCGAAATACCTCTGATTTGTAAAATTAC
* *
49994789 TGAAATACC-CCTGATTT
65 CGAAATACCATC-GATTT
* * *
49994806 GTAAAATTACCGAAATACCCTTGTAGTGTAGAATTATTGAAATGCCTTCT-ATTTGTAAAATTAC
1 GTAAAATTACCGAAATACCCTTGTAGTGTAAAATTATCGAAATACC-TCTGATTTGTAAAATTAC
49994870 CGAAATACCATCGATTT
65 CGAAATACCATCGATTT
** * *
49994887 GTAAAATTACTAAAATACCCTTATAGTGTAAAATTATCAAAATACC
1 GTAAAATTACCGAAATACCCTTGTAGTGTAAAATTATCGAAATACC
49994933 CTTGTGTAAA
Statistics
Matches: 109, Mismatches: 15, Indels: 6
0.84 0.12 0.05
Matches are distributed among these distances:
81 104 0.95
82 5 0.05
ACGTcount: A:0.39, C:0.16, G:0.11, T:0.34
Consensus pattern (81 bp):
GTAAAATTACCGAAATACCCTTGTAGTGTAAAATTATCGAAATACCTCTGATTTGTAAAATTACC
GAAATACCATCGATTT
Found at i:49998098 original size:26 final size:26
Alignment explanation
Indices: 49998062--49998114 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
49998052 GTATTTGAAG
49998062 TTAGAAGTTTTCCGGGACTAGTTGCC
1 TTAGAAGTTTTCCGGGACTAGTTGCC
49998088 TTAGAAGTTTTCCGGGACTAGTTGCC
1 TTAGAAGTTTTCCGGGACTAGTTGCC
49998114 T
1 T
49998115 ACTATTGACG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.19, C:0.19, G:0.26, T:0.36
Consensus pattern (26 bp):
TTAGAAGTTTTCCGGGACTAGTTGCC
Found at i:50000259 original size:55 final size:56
Alignment explanation
Indices: 50000137--50000327 Score: 269
Period size: 56 Copynumber: 3.4 Consensus size: 56
50000127 GACCATGGCA
*
50000137 TCGATATATGTGTGCGAGTAAGACCA-AGTTTAATACATTGGCATCGATATGTGATT
1 TCGATATATGTGTGCGAGTAAGACCACA-TTTAATACGTTGGCATCGATATGTGATT
*
50000193 TCGATATATGTGTGCGAGTAAGACCACATTTAATA-GGTGGCATCGATATGTGATT
1 TCGATATATGTGTGCGAGTAAGACCACATTTAATACGTTGGCATCGATATGTGATT
* * * * *
50000248 TTGATATATGTGTGCGAGTAAGACCACGTATAATACGTTGGCATCAATATGTGGTT
1 TCGATATATGTGTGCGAGTAAGACCACATTTAATACGTTGGCATCGATATGTGATT
* * *
50000304 CCGATTTATGTGTGCAAGTAAGAC
1 TCGATATATGTGTGCGAGTAAGAC
50000328 TTTGTTTGGG
Statistics
Matches: 121, Mismatches: 12, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
55 50 0.41
56 70 0.58
57 1 0.01
ACGTcount: A:0.29, C:0.13, G:0.25, T:0.33
Consensus pattern (56 bp):
TCGATATATGTGTGCGAGTAAGACCACATTTAATACGTTGGCATCGATATGTGATT
Found at i:50001367 original size:31 final size:32
Alignment explanation
Indices: 50001310--50001371 Score: 90
Period size: 31 Copynumber: 2.0 Consensus size: 32
50001300 ATGAAGCTAC
* *
50001310 CAGATATAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATAGATATTGTGGCGAAGCCACCAGAA
*
50001342 CAGATATATATA-TGTGGCGAAGCCACCAGA
1 CAGATATAGATATTGTGGCGAAGCCACCAGA
50001372 TTGCAACAAG
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
31 16 0.59
32 11 0.41
ACGTcount: A:0.35, C:0.19, G:0.24, T:0.21
Consensus pattern (32 bp):
CAGATATAGATATTGTGGCGAAGCCACCAGAA
Found at i:50002070 original size:26 final size:27
Alignment explanation
Indices: 50002041--50002091 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
50002031 CACAAGTTAG
*
50002041 TCATTT-ACGCACGAGGGGCAAAATAA
1 TCATTTAACACACGAGGGGCAAAATAA
* *
50002067 TCATTTAACACCCTAGGGGCAAAAT
1 TCATTTAACACACGAGGGGCAAAAT
50002092 GGTAATTTAC
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 6 0.29
27 15 0.71
ACGTcount: A:0.37, C:0.22, G:0.20, T:0.22
Consensus pattern (27 bp):
TCATTTAACACACGAGGGGCAAAATAA
Found at i:50002165 original size:54 final size:54
Alignment explanation
Indices: 50002105--50002290 Score: 214
Period size: 54 Copynumber: 3.4 Consensus size: 54
50002095 AATTTACCCC
* * * *
50002105 ACAAGGGTATCTCGGTAATTCCACCCTACAGGGGTATTTTGATATTTCTAACCT
1 ACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTTGATAATTCTAACCT
* * * *
50002159 ACAAGGGTATTTCAGTAATTTTATCCTACAGGGGTA-TTTCAGTAATTCTACCCT
1 ACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTTGA-TAATTCTAACCT
* * * * *
50002213 TCAGGGGTATTTCAATAATTCTACCCTACAGGGATATTTTGGTAATTCT-ACCTT
1 ACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTTGATAATTCTAACC-T
*
50002267 ACAGGGGTATTTCAGTAATTCTAC
1 ACAAGGGTATTTCAGTAATTCTAC
50002291 AACTTATCCA
Statistics
Matches: 110, Mismatches: 19, Indels: 6
0.81 0.14 0.04
Matches are distributed among these distances:
53 6 0.05
54 101 0.92
55 3 0.03
ACGTcount: A:0.27, C:0.19, G:0.18, T:0.36
Consensus pattern (54 bp):
ACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTTGATAATTCTAACCT
Found at i:50002212 original size:81 final size:81
Alignment explanation
Indices: 50002109--50002290 Score: 233
Period size: 81 Copynumber: 2.2 Consensus size: 81
50002099 TACCCCACAA
* * * ** *
50002109 GGGTATCTCGGTAATTCCACCCTACAGGGGTATTTTGATATTTCTAACCTACAAGGG-TATTTCA
1 GGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCAATAATTCTAACCTAC-AGGGATATTTCA
*
50002173 GTAATTTTATCC-TACAG
65 GTAATTCTA-CCTTACAG
* * **
50002190 GGGTATTTCAGTAATTCTACCCTTCAGGGGTATTTCAATAATTCTACCCTACAGGGATATTTTGG
1 GGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCAATAATTCTAACCTACAGGGATATTTCAG
50002255 TAATTCTACCTTACAG
66 TAATTCTACCTTACAG
50002271 GGGTATTTCAGTAATTCTAC
1 GGGTATTTCAGTAATTCTAC
50002291 AACTTATCCA
Statistics
Matches: 88, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
80 6 0.07
81 82 0.93
ACGTcount: A:0.26, C:0.19, G:0.18, T:0.37
Consensus pattern (81 bp):
GGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCAATAATTCTAACCTACAGGGATATTTCAG
TAATTCTACCTTACAG
Found at i:50002290 original size:27 final size:26
Alignment explanation
Indices: 50002109--50002290 Score: 186
Period size: 27 Copynumber: 6.8 Consensus size: 26
50002099 TACCCCACAA
* * *
50002109 GGGTATCTCGGTAATTCCACCCTACAG
1 GGGTATTTCAGTAATTCTA-CCTACAG
* * *
50002136 GGGTATTT-TGATATTTCTAACCTACAA
1 GGGTATTTCAG-TAATTCT-ACCTACAG
*
50002163 GGGTATTTCAGTAATTTTATCCTACAG
1 GGGTATTTCAGTAATTCTA-CCTACAG
*
50002190 GGGTATTTCAGTAATTCTACCCTTCAG
1 GGGTATTTCAGTAATTCTA-CCTACAG
*
50002217 GGGTATTTCAATAATTCTACCCTACAG
1 GGGTATTTCAGTAATTCTA-CCTACAG
* **
50002244 GGATATTTTGGTAATTCTACCTTACAG
1 GGGTATTTCAGTAATTCTACC-TACAG
50002271 GGGTATTTCAGTAATTCTAC
1 GGGTATTTCAGTAATTCTAC
50002291 AACTTATCCA
Statistics
Matches: 129, Mismatches: 21, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
26 4 0.03
27 123 0.95
28 2 0.02
ACGTcount: A:0.26, C:0.19, G:0.18, T:0.37
Consensus pattern (26 bp):
GGGTATTTCAGTAATTCTACCTACAG
Found at i:50003506 original size:38 final size:38
Alignment explanation
Indices: 50003463--50003538 Score: 134
Period size: 38 Copynumber: 2.0 Consensus size: 38
50003453 TTCATCCTTT
50003463 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGAAGGAA
1 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGAAGGAA
* *
50003501 TTCATTTCTTTTGGCTGAAAATTCTAAGGAAGGAGGAA
1 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGAAGGAA
50003539 GGAGTTCTTG
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.33, C:0.12, G:0.22, T:0.33
Consensus pattern (38 bp):
TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGAAGGAA
Found at i:50004860 original size:40 final size:41
Alignment explanation
Indices: 50004725--50004910 Score: 227
Period size: 41 Copynumber: 4.6 Consensus size: 41
50004715 TACTCGAATG
*
50004725 ATATCCGGGCTAAG-TCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTAAGCGACT
* * *
50004766 ACATCCGGACTAAGATCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAAGCGACT
* *
50004807 ACATCCGGACTAAGATCCGAAGGCATTTGTGCT-AGCGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAAGCGACT
* * *
50004847 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCT-AGTGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTAAGCGACT
* *
50004887 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGATCCGAAGGC
50004911 CTTGTGCGAG
Statistics
Matches: 132, Mismatches: 10, Indels: 7
0.89 0.07 0.05
Matches are distributed among these distances:
39 1 0.01
40 61 0.46
41 69 0.52
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.24
Consensus pattern (41 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAAGCGACT
Found at i:50004880 original size:81 final size:82
Alignment explanation
Indices: 50004727--50004880 Score: 215
Period size: 81 Copynumber: 1.9 Consensus size: 82
50004717 CTCGAATGAT
* * *
50004727 ATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACTACATCCGGACTAAGATCCGAAGGCTT
1 ATCCGGACTAAGTCCCGAAGGCATTTGTGCTAAGCGACTACATCCGGACTAAGATCCGAAGGCAT
*
50004792 TTGTGCTAAGCGACTAC
66 TTATGCTAAGCGACTAC
* *
50004809 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCT-AGCGACTATATCCGGGCTAAG-TCCCGAAGGC
1 ATCCGGACTAAG-TCCCGAAGGCATTTGTGCTAAGCGACTACATCCGGACTAAGAT-CCGAAGGC
50004871 ATTTATGCTA
64 ATTTATGCTA
50004881 GTGACCATAT
Statistics
Matches: 64, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
80 1 0.02
81 35 0.55
82 27 0.42
83 1 0.02
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (82 bp):
ATCCGGACTAAGTCCCGAAGGCATTTGTGCTAAGCGACTACATCCGGACTAAGATCCGAAGGCAT
TTATGCTAAGCGACTAC
Found at i:50011046 original size:29 final size:28
Alignment explanation
Indices: 50010991--50011046 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 28
50010981 CTGGGGTTTT
* *
50010991 GGACACGGGTGTATCTAGGCCGTGTGAG
1 GGACACGGGCGTATCTAGGCCATGTGAG
* *
50011019 GGACACGGGCGTGTGCTTGGCCATGTGA
1 GGACACGGGCGTAT-CTAGGCCATGTGA
50011047 AAACCCCTGT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
28 12 0.52
29 11 0.48
ACGTcount: A:0.16, C:0.20, G:0.43, T:0.21
Consensus pattern (28 bp):
GGACACGGGCGTATCTAGGCCATGTGAG
Found at i:50015812 original size:40 final size:40
Alignment explanation
Indices: 50015775--50015998 Score: 278
Period size: 40 Copynumber: 5.7 Consensus size: 40
50015765 GCTACTCGTT
* *
50015775 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
50015815 C-AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * *
50015854 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
50015893 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * * * *
50015933 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
50015974 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
50015999 CATCATTCAA
Statistics
Matches: 163, Mismatches: 15, Indels: 12
0.86 0.08 0.06
Matches are distributed among these distances:
39 73 0.45
40 79 0.48
41 11 0.07
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:50015899 original size:79 final size:78
Alignment explanation
Indices: 50015775--50015998 Score: 301
Period size: 79 Copynumber: 2.8 Consensus size: 78
50015765 GCTACTCGTT
* *
50015775 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCAC-AATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGG-CTTAGCCCGGATATAGT-ACTCGCACAAATGCCTTCGGGACTTAACCCGG
50015839 ATTTAGTAACTCGCA
64 ATTTAGTAACTCGCA
50015854 CAAATGCCTTCGGGCTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGCTTAGCCCGGATA-TAGTA-CTCGCACAAATGCCTTCGGGACTTAACCCGG
50015918 ATTTAGTAACTCGCA
64 ATTTAGTAACTCGCA
* * * * *
50015933 CAAATGCCTTCGGATCTTAGTCCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGG-GCTTAGCCCGGATATAGT-AC-TCGCACAAATGCCTTCGGGACTTAACCCG
50015997 GA
63 GA
50015999 CATCATTCAA
Statistics
Matches: 131, Mismatches: 7, Indels: 13
0.87 0.05 0.09
Matches are distributed among these distances:
77 2 0.02
78 20 0.15
79 65 0.50
80 34 0.26
81 10 0.08
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (78 bp):
CAAATGCCTTCGGGCTTAGCCCGGATATAGTACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
TTAGTAACTCGCA
Found at i:50019826 original size:79 final size:81
Alignment explanation
Indices: 50019690--50019874 Score: 218
Period size: 79 Copynumber: 2.3 Consensus size: 81
50019680 TTGAATGATG
* * *
50019690 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGCGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
50019754 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
50019769 TTCCGGGCTAAG-CCCGAAGGCATTTGCGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGCGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
50019831 ATTGTGCGAGTTACTATA
64 ATTGTGCGAGATACTATA
* *
50019849 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
50019875 AACGAGTAGC
Statistics
Matches: 90, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.63
80 32 0.36
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGCGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
TGTGCGAGATACTATA
Found at i:50019881 original size:40 final size:39
Alignment explanation
Indices: 50019691--50019874 Score: 194
Period size: 40 Copynumber: 4.6 Consensus size: 39
50019681 TGAATGATGT
* * * *
50019691 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-AA
* * *
50019731 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA-A
*
50019771 CCGGGCTAAG-CCCGAAGGCATTTGCGCGAGTTACTAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
50019809 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
50019850 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
50019875 AACGAGTAGC
Statistics
Matches: 122, Mismatches: 15, Indels: 14
0.81 0.10 0.09
Matches are distributed among these distances:
39 34 0.28
40 78 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:50019896 original size:79 final size:79
Alignment explanation
Indices: 50019743--50019907 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
50019733 GGACTAAGAT
* * **
50019743 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGCGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
50019808 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
50019822 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
50019885 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
50019901 CCGAAGG
1 CCGAAGG
50019908 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 25 0.34
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:50023701 original size:21 final size:20
Alignment explanation
Indices: 50023664--50023702 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
50023654 GCTTTATATA
*
50023664 TTAAATTATTGATATATTGT
1 TTAAATTATTGAGATATTGT
50023684 TTAAATTATTTGAGATATT
1 TTAAATTA-TTGAGATATT
50023703 TTATTTAAGG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.36, C:0.00, G:0.10, T:0.54
Consensus pattern (20 bp):
TTAAATTATTGAGATATTGT
Found at i:50024454 original size:41 final size:42
Alignment explanation
Indices: 50024399--50024481 Score: 116
Period size: 41 Copynumber: 2.0 Consensus size: 42
50024389 ATTTTCATAC
* * *
50024399 ATGTCTGCATGGTTTTGAATTTTTTTTGGCACTAGCAT-TATA
1 ATGTCTGCAAGGTTTAGAATTTTTTTT-GCACTAACATATATA
50024441 ATGT-TGCAAGGTTTAGAATTTTTTTTGCACTAACATATATA
1 ATGTCTGCAAGGTTTAGAATTTTTTTTGCACTAACATATATA
50024482 TAAAGTTTGA
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
40 9 0.24
41 24 0.65
42 4 0.11
ACGTcount: A:0.27, C:0.11, G:0.17, T:0.46
Consensus pattern (42 bp):
ATGTCTGCAAGGTTTAGAATTTTTTTTGCACTAACATATATA
Found at i:50026571 original size:17 final size:17
Alignment explanation
Indices: 50026532--50026568 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 17
50026522 AAATCTATTG
50026532 AAGAATGTAAAAATAGAA
1 AAGAATGTAAAAATA-AA
50026550 AAGAATGGTAAAAATAAA
1 AAGAAT-GTAAAAATAAA
50026568 A
1 A
50026569 GAACAATCGA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 9 0.50
19 9 0.50
ACGTcount: A:0.68, C:0.00, G:0.16, T:0.16
Consensus pattern (17 bp):
AAGAATGTAAAAATAAA
Found at i:50036188 original size:39 final size:39
Alignment explanation
Indices: 50036114--50036335 Score: 252
Period size: 39 Copynumber: 5.6 Consensus size: 39
50036104 GCTACTCGTT
* *
50036114 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTC-GGACTTAACCCGGATT-TAGTAACTCGCA
*
50036154 CAATTGCCTTCGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGACTTAACCCGGATTTAGTAACTCGCA
* * * *
50036193 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGACTTAACCCGGATTTAGTAACTCGCA
50036232 CAAATGCCTTCGGACTTAACCCGGA-TTAGTAACTCGCA
1 CAAATGCCTTCGGACTTAACCCGGATTTAGTAACTCGCA
** * * * *
50036270 CAAATGCCTTCGGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
50036311 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTC-GGACTTAACCCGGA
50036336 CATCATTCAA
Statistics
Matches: 159, Mismatches: 18, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
38 26 0.16
39 89 0.56
40 33 0.21
41 11 0.07
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (39 bp):
CAAATGCCTTCGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:50036234 original size:78 final size:78
Alignment explanation
Indices: 50036114--50036335 Score: 281
Period size: 78 Copynumber: 2.8 Consensus size: 78
50036104 GCTACTCGTT
* *
50036114 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAATTGCCTTCGGACTTAACCCGGA
1 CAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGACTTAACCCGGA
50036179 TTTAGTAACTCGCA
66 -TTAGTAACTCGCA
* *
50036193 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTCGGACTTAACCCGG
1 CAAATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGACTTAACCCGG
50036256 ATTAGTAACTCGCA
65 ATTAGTAACTCGCA
* * * * * *
50036270 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGA-CATAGCCCGGATATAGTAAC-TCGCACAAATGCCTTC-GGACTTAACCC
50036333 GGA
63 GGA
50036336 CATCATTCAA
Statistics
Matches: 127, Mismatches: 10, Indels: 12
0.85 0.07 0.08
Matches are distributed among these distances:
76 2 0.02
77 25 0.20
78 64 0.50
79 36 0.28
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (78 bp):
CAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGACTTAACCCGGA
TTAGTAACTCGCA
Found at i:50050490 original size:150 final size:151
Alignment explanation
Indices: 50050203--50050597 Score: 562
Period size: 150 Copynumber: 2.6 Consensus size: 151
50050193 AAAGCTCTCT
*
50050203 GGTACGCATAGTAGCCTGCACTTAGTACTACACATACGACCTATCAATCTGGTACACGTAGTAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
* * * * * *
50050268 CTGTACTTAGTACTACACACATGACTTATCCATCTGATACACGTAGTAGCTTGCACATAGGACTA
66 CTGCACTTAGTACTACACACATGACCTAACCATCTGATACACGTAATAGCCTACACATAGGACTA
* * *
50050333 CAGACATGGTCG-AAGT-TTACG
131 CACACATGATCGAAACTATT--G
* * * *
50050354 GGTATGCATAGTAG-CTGCACTTAGTACTACACATGCGACCGATCAATCGGGTACACGTACTAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
* * * *
50050418 CTACACTTAGTACTACACACATGACCTAACCATCTGATACATGTAATAGCCTACACTTAGTACTA
66 CTGCACTTAGTACTACACACATGACCTAACCATCTGATACACGTAATAGCCTACACATAGGACTA
50050483 CACACATGATCGAAACTATTG
131 CACACATGATCGAAACTATTG
* *
50050504 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACGATCTGGTACACGTAGTAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
*
50050569 CTGCACTTAGTACTACACACGTGACCTAA
66 CTGCACTTAGTACTACACACATGACCTAA
50050598 AAATGCCTTA
Statistics
Matches: 215, Mismatches: 26, Indels: 6
0.87 0.11 0.02
Matches are distributed among these distances:
150 125 0.58
151 88 0.41
152 2 0.01
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.25
Consensus pattern (151 bp):
GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
CTGCACTTAGTACTACACACATGACCTAACCATCTGATACACGTAATAGCCTACACATAGGACTA
CACACATGATCGAAACTATTG
Found at i:50050595 original size:50 final size:50
Alignment explanation
Indices: 50050200--50050597 Score: 332
Period size: 50 Copynumber: 7.9 Consensus size: 50
50050190 ACCAAAGCTC
* * * * *
50050200 TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATACGACCTATCAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACATGACCTAACAA
* * * *
50050250 TCTGGTACACGTAGTAGCCTGTACTTAGTACTACACACATGACTTATCCA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACATGACCTAACAA
* * * * * ** * ***
50050300 TCTGATACACGTAGTAGCTTGCACATAGGACTACAGACATGGTCGAAGTT
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACATGACCTAACAA
* ** * *** * *
50050350 TACGGGTATGCATAGTAG-CTGCACTTAGTACTACACATGCGACCGATCAA
1 T-CTGGTACACGTAGTAGCCTGCACTTAGTACTACACACATGACCTAACAA
* * * *
50050400 TCGGGTACACGTACTAGCCTACACTTAGTACTACACACATGACCTAACCA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACATGACCTAACAA
* * * * ** *
50050450 TCTGATACATGTAATAGCCTACACTTAGTACTACACACATGATCGAAACTA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACATGA-CCTAACAA
* * *** *
50050501 T-TGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACGA
1 TCT-GGTACACGTAGTAGCCTGCACTTAGTACTACACACATGACCTAACAA
*
50050551 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACATGACCTAA
50050598 AAATGCCTTA
Statistics
Matches: 270, Mismatches: 73, Indels: 10
0.76 0.21 0.03
Matches are distributed among these distances:
49 12 0.04
50 210 0.78
51 48 0.18
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (50 bp):
TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACATGACCTAACAA
Found at i:50051317 original size:30 final size:30
Alignment explanation
Indices: 50051260--50051318 Score: 73
Period size: 30 Copynumber: 2.0 Consensus size: 30
50051250 CAAAAATCAT
* *
50051260 ACTTTTACAAATTTACATTTTGACCCCTAA
1 ACTTTCACAAATTTACACTTTGACCCCTAA
* * *
50051290 ACTTTCACATATTTGCACTTTGGCCCCTA
1 ACTTTCACAAATTTACACTTTGACCCCTA
50051319 GGTTTGTAAA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.27, C:0.27, G:0.07, T:0.39
Consensus pattern (30 bp):
ACTTTCACAAATTTACACTTTGACCCCTAA
Found at i:50053630 original size:15 final size:14
Alignment explanation
Indices: 50053610--50053655 Score: 65
Period size: 15 Copynumber: 3.1 Consensus size: 14
50053600 ATACCAGGAT
*
50053610 TAAGAAGTCCAAGA
1 TAAGAAATCCAAGA
50053624 TAGAGAAATCCAAGA
1 TA-AGAAATCCAAGA
50053639 TAAGGAAATCCAAGA
1 TAA-GAAATCCAAGA
50053654 TA
1 TA
50053656 CAATATCATA
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
14 3 0.10
15 26 0.90
ACGTcount: A:0.52, C:0.13, G:0.20, T:0.15
Consensus pattern (14 bp):
TAAGAAATCCAAGA
Found at i:50057223 original size:50 final size:50
Alignment explanation
Indices: 50057125--50057511 Score: 355
Period size: 50 Copynumber: 7.7 Consensus size: 50
50057115 TTGGTACGCA
* * *
50057125 TAGTAGCCTACTCTTAGTACTACACATGCGACCTATCAATCT-AGTACACG
1 TAGTAGCCTACACTTAGTACTACACACGTGACCTATCAATCTGA-TACACG
* * *
50057175 TAGTAGCCTACACTTAGTACTACATACGTGACTTATCCATCTGATACACG
1 TAGTAGCCTACACTTAGTACTACACACGTGACCTATCAATCTGATACACG
* ** * * * * *
50057225 TAGTAACCTACACTTAGTACTACACACGTGATCGAAGTTAA-CGGGTACGCA
1 TAGTAGCCTACACTTAGTACTACACACGTGA-CCTA-TCAATCTGATACACG
* * * * *
50057276 TAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCCGATACATG
1 TAGTAGCCTACACTTAGTACTACACACGTGACCTATCAATCTGATACACG
* * * *
50057326 TAGGAGCCTACACTTAGTACTACACACATGACCTAACCATCTGATACACG
1 TAGTAGCCTACACTTAGTACTACACACGTGACCTATCAATCTGATACACG
* * ** * * * * *
50057376 TAGTAGTCTGCACTTAGTACTACACACGTGATCGAAACTATCGGGTACACA
1 TAGTAGCCTACACTTAGTACTACACACGTGA-CCTATCAATCTGATACACG
* * * * * * *
50057427 TAGTAGCCTGCACTTAGTACTACACATGCGACCGAACAATCTGGTACACA
1 TAGTAGCCTACACTTAGTACTACACACGTGACCTATCAATCTGATACACG
* *
50057477 TAGTAGCCTGCACTTAGTACTACACACATGACCTA
1 TAGTAGCCTACACTTAGTACTACACACGTGACCTA
50057512 AAACTGTCTT
Statistics
Matches: 274, Mismatches: 58, Indels: 10
0.80 0.17 0.03
Matches are distributed among these distances:
49 3 0.01
50 192 0.70
51 77 0.28
52 2 0.01
ACGTcount: A:0.32, C:0.27, G:0.16, T:0.25
Consensus pattern (50 bp):
TAGTAGCCTACACTTAGTACTACACACGTGACCTATCAATCTGATACACG
Found at i:50057322 original size:101 final size:99
Alignment explanation
Indices: 50057125--50057511 Score: 378
Period size: 101 Copynumber: 3.8 Consensus size: 99
50057115 TTGGTACGCA
* * * * * * * *
50057125 TAGTAGCCTACTCTTAGTACTACACATGCGACCTATCAATCTAGTACACGTAGTAGCCTACACTT
1 TAGTAGCCTACACTTAGTACTACACACGTGACCGAACAA-CTGGTACACATAGTAGCCTGCACTT
* * * *
50057190 AGTACTACATACGTGACTTATCCATCTGATACACG
65 AGTACTACACACGTGACCTATCAATCCGATACACG
* * * * *
50057225 TAGTAACCTACACTTAGTACTACACACGTGATCGAAGTTAACGGGTACGCATAGTAGCCTGCACT
1 TAGTAGCCTACACTTAGTACTACACACGTGACCGAA--CAACTGGTACACATAGTAGCCTGCACT
* * *
50057290 TAGTACTACACATGCGACCTATCAATCCGATACATG
64 TAGTACTACACACGTGACCTATCAATCCGATACACG
* * * * * * *
50057326 TAGGAGCCTACACTTAGTACTACACACATGACCTAACCATCTGATACACGTAGTAGTCTGCACTT
1 TAGTAGCCTACACTTAGTACTACACACGTGACCGAA-CAACTGGTACACATAGTAGCCTGCACTT
** * * * * *
50057391 AGTACTACACACGTGATCGAAACTATCGGGTACACA
65 AGTACTACACACGTGA-CCTATCAATCCGATACACG
* * *
50057427 TAGTAGCCTGCACTTAGTACTACACATGCGACCGAACAATCTGGTACACATAGTAGCCTGCACTT
1 TAGTAGCCTACACTTAGTACTACACACGTGACCGAACAA-CTGGTACACATAGTAGCCTGCACTT
*
50057492 AGTACTACACACATGACCTA
65 AGTACTACACACGTGACCTA
50057512 AAACTGTCTT
Statistics
Matches: 227, Mismatches: 56, Indels: 8
0.78 0.19 0.03
Matches are distributed among these distances:
100 68 0.30
101 157 0.69
102 2 0.01
ACGTcount: A:0.32, C:0.27, G:0.16, T:0.25
Consensus pattern (99 bp):
TAGTAGCCTACACTTAGTACTACACACGTGACCGAACAACTGGTACACATAGTAGCCTGCACTTA
GTACTACACACGTGACCTATCAATCCGATACACG
Found at i:50057391 original size:151 final size:151
Alignment explanation
Indices: 50057117--50057554 Score: 590
Period size: 151 Copynumber: 2.9 Consensus size: 151
50057107 GAAGCTCTTT
* * *
50057117 GGTACGCATAGTAGCCTACTCTTAGTACTACACATGCGACCTATCAAT-CTAGTACACGTAGTAG
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCCGA-TACACGTAGTAG
* * * * * *
50057181 CCTACACTTAGTACTACATACGTGACTTATCCATCTGATACACGTAGTAACCTACACTTAGTACT
65 CCTACACTTAGTACTACACACATGACCTAACCATCTGATACACGTAGTAGCCTGCACTTAGTACT
**
50057246 ACACACGTGATCGAAGTTAACG
130 ACACACGTGATCGAAACTAACG
* *
50057268 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCCGATACATGTAGGAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCCGATACACGTAGTAGC
*
50057333 CTACACTTAGTACTACACACATGACCTAACCATCTGATACACGTAGTAGTCTGCACTTAGTACTA
66 CTACACTTAGTACTACACACATGACCTAACCATCTGATACACGTAGTAGCCTGCACTTAGTACTA
*
50057398 CACACGTGATCGAAACTATCG
131 CACACGTGATCGAAACTAACG
* * * * * *
50057419 GGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCGAACAATCTGGTACACATAGTAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCCGATACACGTAGTAGC
* ** * * * *
50057484 CTGCACTTAGTACTACACACATGACCTAAAACTGTCTTAAACACATAGTAGCCTGCACATAGTAC
66 CTACACTTAGTACTACACACATGACCT--AACCATCTGATACACGTAGTAGCCTGCACTTAGTAC
50057549 TACACA
129 TACACA
50057555 TGTGTTCTCA
Statistics
Matches: 253, Mismatches: 31, Indels: 4
0.88 0.11 0.01
Matches are distributed among these distances:
151 216 0.85
152 2 0.01
153 35 0.14
ACGTcount: A:0.32, C:0.27, G:0.16, T:0.25
Consensus pattern (151 bp):
GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCCGATACACGTAGTAGC
CTACACTTAGTACTACACACATGACCTAACCATCTGATACACGTAGTAGCCTGCACTTAGTACTA
CACACGTGATCGAAACTAACG
Found at i:50057532 original size:52 final size:52
Alignment explanation
Indices: 50057169--50057554 Score: 263
Period size: 50 Copynumber: 7.6 Consensus size: 52
50057159 ATCAATCTAG
* * * * * * * *
50057169 TACACGTAGTAGCCTACACTTAGTACTACATACGTGA-CT-TATCCATCTGA
1 TACACATAGTAGCCTGCACTTAGTACTACACACATGACCTAAAACTATCGGA
* * * * * * ** * *
50057219 TACACGTAGTAACCTACACTTAGTACTACACACGTGATC-GAAGTTAACGGG
1 TACACATAGTAGCCTGCACTTAGTACTACACACATGACCTAAAACTATCGGA
* *** * * *
50057270 TACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCT--ATCAATCCGA
1 TACACATAGTAGCCTGCACTTAGTACTACACACATGACCTAAAACTATCGGA
** * * * *
50057320 TACATGTAGGAGCCTACACTTAGTACTACACACATGACCT--AACCATCTGA
1 TACACATAGTAGCCTGCACTTAGTACTACACACATGACCTAAAACTATCGGA
* * * * * *
50057370 TACACGTAGTAGTCTGCACTTAGTACTACACACGTGATC-GAAACTATCGGG
1 TACACATAGTAGCCTGCACTTAGTACTACACACATGACCTAAAACTATCGGA
*** * *
50057421 TACACATAGTAGCCTGCACTTAGTACTACACATGCGACC--GAACAATCTGG-
1 TACACATAGTAGCCTGCACTTAGTACTACACACATGACCTAAAACTATC-GGA
* **
50057471 TACACATAGTAGCCTGCACTTAGTACTACACACATGACCTAAAACTGTCTTA
1 TACACATAGTAGCCTGCACTTAGTACTACACACATGACCTAAAACTATCGGA
* *
50057523 AACACATAGTAGCCTGCACATAGTACTACACA
1 TACACATAGTAGCCTGCACTTAGTACTACACA
50057555 TGTGTTCTCA
Statistics
Matches: 268, Mismatches: 59, Indels: 16
0.78 0.17 0.05
Matches are distributed among these distances:
50 153 0.57
51 80 0.30
52 35 0.13
ACGTcount: A:0.33, C:0.27, G:0.16, T:0.25
Consensus pattern (52 bp):
TACACATAGTAGCCTGCACTTAGTACTACACACATGACCTAAAACTATCGGA
Found at i:50057568 original size:102 final size:101
Alignment explanation
Indices: 50057123--50057556 Score: 300
Period size: 101 Copynumber: 4.3 Consensus size: 101
50057113 CTTTGGTACG
* * * * * * *
50057123 CATAGTAGCCTACTCTTAGTACTACACATGCGACCTATCAATCT-AGTACACGTAGTAGCCTACA
1 CATAGTAGCCTGCACATAGTACTACACATGCGACCGAACAATCTGA-TACACATAGTAGCCTGCA
* * ** * * * *
50057187 CTTAGTACTACATACGTGA-CTTATCCATCTGATACA
65 CTTAGTACTACACACATGACCAAAACTATCGGAAACA
* * * * * * * * * * *
50057223 CGTAGTAACCTACACTTAGTACTACACACGTGATCGAAGTTAA-CGGGTACGCATAGTAGCCTGC
1 CATAGTAGCCTGCACATAGTACTACACATGCGACCGAA--CAATCTGATACACATAGTAGCCTGC
*** * * * * *
50057287 ACTTAGTACTACACATGCGACC-TATCAATCCGATACA
64 ACTTAGTACTACACACATGACCAAAACTATCGGAAACA
** * * * *** * * * *
50057324 TGTAGGAGCCTACACTTAGTACTACACACATGACCTAACCATCTGATACACGTAGTAGTCTGCAC
1 CATAGTAGCCTGCACATAGTACTACACATGCGACCGAACAATCTGATACACATAGTAGCCTGCAC
* * * **
50057389 TTAGTACTACACACGTGATCGAAACTATCGGGTACA
66 TTAGTACTACACACATGACCAAAACTATCGGAAACA
* *
50057425 CATAGTAGCCTGCACTTAGTACTACACATGCGACCGAACAATCTGGTACACATAGTAGCCTGCAC
1 CATAGTAGCCTGCACATAGTACTACACATGCGACCGAACAATCTGATACACATAGTAGCCTGCAC
* **
50057490 TTAGTACTACACACATGACCTAAAACTGTCTTAAACA
66 TTAGTACTACACACATGACC-AAAACTATCGGAAACA
50057527 CATAGTAGCCTGCACATAGTACTACACATG
1 CATAGTAGCCTGCACATAGTACTACACATG
50057557 TGTTCTCACA
Statistics
Matches: 266, Mismatches: 61, Indels: 12
0.78 0.18 0.04
Matches are distributed among these distances:
99 1 0.00
100 65 0.24
101 158 0.59
102 42 0.16
ACGTcount: A:0.32, C:0.27, G:0.16, T:0.25
Consensus pattern (101 bp):
CATAGTAGCCTGCACATAGTACTACACATGCGACCGAACAATCTGATACACATAGTAGCCTGCAC
TTAGTACTACACACATGACCAAAACTATCGGAAACA
Found at i:50059783 original size:85 final size:85
Alignment explanation
Indices: 50059627--50059789 Score: 193
Period size: 85 Copynumber: 1.9 Consensus size: 85
50059617 GTCTAAGACA
* * * ** * *
50059627 TCGTGTAAGACCGTGTCTGGGACACAGGCCTCGATTGAGATTTATGTATAAGACCATGTCTAGGA
1 TCGTGTAAGACCCTGTCTGGGACACAGGCATCGATTGAGAATTACATATAAGACCACGTCCAGGA
50059692 CATCGGCATTGTATCTGATT
66 CATCGGCATTGTATCTGATT
* * * * *
50059712 TCGTGTAAGACCCTGTCTGGGATAGAGGCATCGATAT-AGAATTACATGTAAGACTACGTCCGGG
1 TCGTGTAAGACCCTGTCTGGGACACAGGCATCGAT-TGAGAATTACATATAAGACCACGTCCAGG
*
50059776 ACGTCGGCATTGTA
65 ACATCGGCATTGTA
50059790 CTTGTTTATA
Statistics
Matches: 64, Mismatches: 13, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
85 63 0.98
86 1 0.02
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.28
Consensus pattern (85 bp):
TCGTGTAAGACCCTGTCTGGGACACAGGCATCGATTGAGAATTACATATAAGACCACGTCCAGGA
CATCGGCATTGTATCTGATT
Found at i:50060760 original size:14 final size:14
Alignment explanation
Indices: 50060737--50060770 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
50060727 TTAATCATCA
50060737 AGCA-TTCATATTG
1 AGCACTTCATATTG
50060750 AGCACTTCATATTG
1 AGCACTTCATATTG
50060764 AGCACTT
1 AGCACTT
50060771 TATACCAAGA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 4 0.20
14 16 0.80
ACGTcount: A:0.29, C:0.21, G:0.15, T:0.35
Consensus pattern (14 bp):
AGCACTTCATATTG
Found at i:50061704 original size:18 final size:18
Alignment explanation
Indices: 50061681--50061716 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
50061671 TCCACCCCCG
*
50061681 GTTAATCCTTCTCAAACA
1 GTTAATACTTCTCAAACA
50061699 GTTAATACTTCTCAAACA
1 GTTAATACTTCTCAAACA
50061717 TTTGATATGC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.36, C:0.25, G:0.06, T:0.33
Consensus pattern (18 bp):
GTTAATACTTCTCAAACA
Found at i:50071751 original size:43 final size:42
Alignment explanation
Indices: 50071703--50071859 Score: 165
Period size: 43 Copynumber: 3.7 Consensus size: 42
50071693 AGCTCGTACA
*
50071703 ATGCCAATGTTCTAGACGTGGTCTTACATGTAATCAAATATCG
1 ATGCCAATGTCCTAGACGTGGTCTTACATGTAATCAAA-ATCG
* * * *
50071746 ATGCCATTATCCTAGACAG-GGTCTTACATGAAATCAAACA-CA
1 ATGCCAATGTCCTAGAC-GTGGTCTTACATGTAATCAAA-ATCG
** * *
50071788 ATGTTAATGTTCTAGACATGGTCTTACATGTAAATCACAAATCG
1 ATGCCAATGTCCTAGACGTGGTCTTACATGT-AATCA-AAATCG
*
50071832 ATGCCAATGTCCCAGACGTGGTCTTACA
1 ATGCCAATGTCCTAGACGTGGTCTTACA
50071860 CAATATCACA
Statistics
Matches: 90, Mismatches: 19, Indels: 9
0.76 0.16 0.08
Matches are distributed among these distances:
42 24 0.27
43 39 0.43
44 27 0.30
ACGTcount: A:0.32, C:0.21, G:0.17, T:0.29
Consensus pattern (42 bp):
ATGCCAATGTCCTAGACGTGGTCTTACATGTAATCAAAATCG
Found at i:50073310 original size:42 final size:43
Alignment explanation
Indices: 50073259--50073355 Score: 135
Period size: 42 Copynumber: 2.3 Consensus size: 43
50073249 CTAAGACTAC
*
50073259 GTGTAAGACCATATCTAAGATATGACATTGATATGAGACTT-T
1 GTGTAAGACCATATCTAAGATATGACATCGATATGAGACTTCT
* ** *
50073301 GTGTTAGACCATATCTGGGATATGGCATCGATATGAGACTTCT
1 GTGTAAGACCATATCTAAGATATGACATCGATATGAGACTTCT
50073344 -TGTAAGACCATA
1 GTGTAAGACCATA
50073356 GCTGCGCTAT
Statistics
Matches: 48, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
42 47 0.98
43 1 0.02
ACGTcount: A:0.32, C:0.14, G:0.22, T:0.32
Consensus pattern (43 bp):
GTGTAAGACCATATCTAAGATATGACATCGATATGAGACTTCT
Found at i:50076856 original size:82 final size:81
Alignment explanation
Indices: 50076742--50076897 Score: 197
Period size: 82 Copynumber: 1.9 Consensus size: 81
50076732 AAATTGTATA
* * * * *
50076742 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGGGTGCGAAATGAATATGAT-GCACTAAGTG
1 GCACTAAGTGTGCAAGTCAACTATGTAGCACTAAGGGTGCGAAATGAATACG-TGGCACTAAGTG
50076806 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
* ** *
50076823 GCACTAAGTGTGCAAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTG
1 GCACTAAGTGTGCAAGTC-AACTATGTAGCACTAAGGGTGCGAAATGAATACGTGGCACTAAGTG
*
50076888 TGCGAGTTGA
65 TGCGAATTGA
50076898 TTGTATAGCA
Statistics
Matches: 63, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
81 17 0.27
82 46 0.73
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCAAGTCAACTATGTAGCACTAAGGGTGCGAAATGAATACGTGGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:50076864 original size:55 final size:54
Alignment explanation
Indices: 50076740--50076892 Score: 168
Period size: 55 Copynumber: 2.8 Consensus size: 54
50076730 TTAAATTGTA
* *
50076740 TAGCACTAAGTGTGCG-ATTCGACTATGTTGCACTAAGGGTGCGAAATGAATATG
1 TAGCACTAAGTGTGCGAATT-GACTATGTGGCACTAAGTGTGCGAAATGAATATG
* * * *
50076794 -ATGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGC-AAGTCTAACTATG
1 TA-GCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAAAT-GAA-TATG
* * *
50076849 TAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTGTGCGA
1 TAGCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGA
50076893 GTTGATTGTA
Statistics
Matches: 82, Mismatches: 11, Indels: 10
0.80 0.11 0.10
Matches are distributed among these distances:
53 4 0.05
54 34 0.41
55 42 0.51
56 2 0.02
ACGTcount: A:0.28, C:0.17, G:0.27, T:0.27
Consensus pattern (54 bp):
TAGCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAAATGAATATG
Found at i:50076899 original size:27 final size:27
Alignment explanation
Indices: 50076742--50076897 Score: 147
Period size: 27 Copynumber: 5.7 Consensus size: 27
50076732 AAATTGTATA
*
50076742 GCACTAAGTGTGCG-ATTCGACTATGTT
1 GCACTAAGTGTGCGAATT-GACTATGTG
* * *
50076769 GCACTAAGGGTGCGAAATGAATATGAT-
1 GCACTAAGTGTGCGAATTGACTATG-TG
* *
50076796 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAATTGACTATGTG
* *
50076823 GCACTAAGTGTGC-AAGTCTAACTATGTA
1 GCACTAAGTGTGCGAA-T-TGACTATGTG
* * *
50076851 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGAATTGACTATGTG
*
50076878 GCACTAAGTGTGCGAGTTGA
1 GCACTAAGTGTGCGAATTGA
50076898 TTGTATAGCA
Statistics
Matches: 105, Mismatches: 18, Indels: 12
0.78 0.13 0.09
Matches are distributed among these distances:
26 2 0.02
27 79 0.75
28 23 0.22
29 1 0.01
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.28
Consensus pattern (27 bp):
GCACTAAGTGTGCGAATTGACTATGTG
Found at i:50076908 original size:27 final size:27
Alignment explanation
Indices: 50076734--50076918 Score: 94
Period size: 27 Copynumber: 6.8 Consensus size: 27
50076724 GCGGGATTAA
50076734 ATTGTATAGCACTAAGTGTGCG-ATTCG
1 ATTGTATAGCACTAAGTGTGCGAATT-G
* *
50076761 ACTATGT-T-GCACTAAGGGTGCGAAATG
1 A-T-TGTATAGCACTAAGTGTGCGAATTG
50076788 AATATG-AT-GCACTAAGTGTGCGAATTG
1 -AT-TGTATAGCACTAAGTGTGCGAATTG
*** *** *
50076815 ACCATGCGGCACTAAGTGTGC-AAGTCTA
1 ATTGTATAGCACTAAGTGTGCGAA-T-TG
* * * *
50076843 ACTATGTAGCACTAAGTGTGCGATTTG
1 ATTGTATAGCACTAAGTGTGCGAATTG
*** * *
50076870 ATTACGTGGCACTAAGTGTGCGAGTTG
1 ATTGTATAGCACTAAGTGTGCGAATTG
*
50076897 ATTGTATAGCACTGAGTGTGCG
1 ATTGTATAGCACTAAGTGTGCG
50076919 GGCTCAATAT
Statistics
Matches: 124, Mismatches: 24, Indels: 20
0.74 0.14 0.12
Matches are distributed among these distances:
26 3 0.02
27 92 0.74
28 25 0.20
29 4 0.03
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (27 bp):
ATTGTATAGCACTAAGTGTGCGAATTG
Found at i:50076909 original size:82 final size:81
Alignment explanation
Indices: 50076734--50076917 Score: 190
Period size: 82 Copynumber: 2.3 Consensus size: 81
50076724 GCGGGATTAA
* * * * *
50076734 ATTGTATAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGGGTGCGAAATGAATATGATGCA
1 ATTGTATAGCACTAAGTGTGCAAGTCAACTATGTAGCACTAAGGGTGCGAAATGAATACGATGCA
50076799 CTAAGTGTGCGAATTG
66 CTAAGTGTGCGAATTG
*** *** * ** *
50076815 ACCATGCGGCACTAAGTGTGCAAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGG
1 ATTGTATAGCACTAAGTGTGCAAGTC-AACTATGTAGCACTAAGGGTGCGAAATGAATACGAT-G
*
50076879 CACTAAGTGTGCGAGTTG
64 CACTAAGTGTGCGAATTG
*
50076897 ATTGTATAGCACTGAGTGTGC
1 ATTGTATAGCACTAAGTGTGC
50076918 GGGCTCAATA
Statistics
Matches: 78, Mismatches: 23, Indels: 3
0.75 0.22 0.03
Matches are distributed among these distances:
81 19 0.24
82 59 0.76
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
ATTGTATAGCACTAAGTGTGCAAGTCAACTATGTAGCACTAAGGGTGCGAAATGAATACGATGCA
CTAAGTGTGCGAATTG
Found at i:50088045 original size:20 final size:21
Alignment explanation
Indices: 50088008--50088057 Score: 68
Period size: 20 Copynumber: 2.5 Consensus size: 21
50087998 TTGATAAATT
50088008 TTACAAATATAGTTTTATTTA
1 TTACAAATATAGTTTTATTTA
*
50088029 TTACAAA-ATATTTTTATTTA
1 TTACAAATATAGTTTTATTTA
*
50088049 ATA-AAATAT
1 TTACAAATAT
50088058 GGATAATAGA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
19 3 0.12
20 16 0.62
21 7 0.27
ACGTcount: A:0.44, C:0.04, G:0.02, T:0.50
Consensus pattern (21 bp):
TTACAAATATAGTTTTATTTA
Found at i:50088810 original size:27 final size:25
Alignment explanation
Indices: 50088779--50088848 Score: 68
Period size: 26 Copynumber: 2.6 Consensus size: 25
50088769 ATTTAAATTT
** *
50088779 ATTTTATCTTTAAAAAGTATGTATTAC
1 ATTTTATAATTAAAAA-TACGTATT-C
50088806 ATTTTTATAATTAAAAATACGTATTC
1 A-TTTTATAATTAAAAATACGTATTC
*
50088832 ATTTTTACAATTAAAAA
1 A-TTTTATAATTAAAAA
50088849 ATATATATTA
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
26 17 0.45
27 8 0.21
28 13 0.34
ACGTcount: A:0.43, C:0.07, G:0.04, T:0.46
Consensus pattern (25 bp):
ATTTTATAATTAAAAATACGTATTC
Found at i:50088843 original size:26 final size:28
Alignment explanation
Indices: 50088788--50088848 Score: 90
Period size: 26 Copynumber: 2.2 Consensus size: 28
50088778 TATTTTATCT
* *
50088788 TTAAAAAGTATGTATTACATTTTTATAA
1 TTAAAAAGTACGTATTACATTTTTACAA
50088816 TTAAAAA-TACGTATT-CATTTTTACAA
1 TTAAAAAGTACGTATTACATTTTTACAA
50088842 TTAAAAA
1 TTAAAAA
50088849 ATATATATTA
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
26 17 0.55
27 7 0.23
28 7 0.23
ACGTcount: A:0.46, C:0.07, G:0.05, T:0.43
Consensus pattern (28 bp):
TTAAAAAGTACGTATTACATTTTTACAA
Found at i:50088857 original size:27 final size:28
Alignment explanation
Indices: 50088788--50088859 Score: 94
Period size: 27 Copynumber: 2.6 Consensus size: 28
50088778 TATTTTATCT
* *
50088788 TTAAAAAGTATGTATTACATTTTTATAA
1 TTAAAAAATATGTATTACATTTTTACAA
*
50088816 TT-AAAAATACGTATT-CATTTTTACAA
1 TTAAAAAATATGTATTACATTTTTACAA
*
50088842 TTAAAAAATATATATTAC
1 TTAAAAAATATGTATTAC
50088860 CAACTTCAAA
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
26 12 0.32
27 22 0.59
28 3 0.08
ACGTcount: A:0.46, C:0.07, G:0.04, T:0.43
Consensus pattern (28 bp):
TTAAAAAATATGTATTACATTTTTACAA
Found at i:50092309 original size:40 final size:40
Alignment explanation
Indices: 50092265--50092436 Score: 188
Period size: 40 Copynumber: 4.3 Consensus size: 40
50092255 GGACTAAGAT
*
50092265 CCGAAGGCATTTGTGCGAGATAC-AAATTTCGGGTTAAGCC
1 CCGAAGGCATTTGTGCGAGATACTAAA-TCCGGGTTAAGCC
* *
50092305 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGATACTAAATCCGGGTTAAGCC
* * * *
50092345 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATA-TC
1 CCGAAGGCATTTGTGCGAGATACTAAATCCGGGTTA-AGCC
* * * * * *
50092385 CCGAAGGCA-TTGTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTTGTGCGAGATACTAAATCCGGGTTAAGCC
50092424 CCGAAGGCATTTG
1 CCGAAGGCATTTG
50092437 AACGAGGAGC
Statistics
Matches: 115, Mismatches: 13, Indels: 8
0.85 0.10 0.06
Matches are distributed among these distances:
39 32 0.28
40 79 0.69
41 4 0.03
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGATACTAAATCCGGGTTAAGCC
Found at i:50092361 original size:80 final size:79
Alignment explanation
Indices: 50092265--50092434 Score: 200
Period size: 79 Copynumber: 2.1 Consensus size: 79
50092255 GGACTAAGAT
* * *
50092265 CCGAAGGCATTTGTGCGAGATA-CAAATTTCGGGTTA-AGCCCCGAAGGCCTTTGTGCGAGATAC
1 CCGAAGGCATTCGTGCGAGATATCAAA-TCCGGGTTATA-CCCCGAAGG-CATTGTGCGAGATAC
* *
50092328 TAAATCCGGGTTAAGTC
63 TAAAACCGGGCTAAGTC
* * * * *
50092345 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATATCCCGAAGGCATTGTGTGAGTTACTAA
1 CCGAAGGCATTCGTGCGAGATATCAAATCCGGGTTATACCCCGAAGGCATTGTGCGAGATACTAA
*
50092410 AACCGGGCTATGTC
66 AACCGGGCTAAGTC
50092424 CCGAAGGCATT
1 CCGAAGGCATT
50092435 TGAACGAGGA
Statistics
Matches: 77, Mismatches: 11, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
79 37 0.48
80 36 0.47
81 4 0.05
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTCGTGCGAGATATCAAATCCGGGTTATACCCCGAAGGCATTGTGCGAGATACTAA
AACCGGGCTAAGTC
Found at i:50092454 original size:79 final size:79
Alignment explanation
Indices: 50092304--50092469 Score: 183
Period size: 79 Copynumber: 2.1 Consensus size: 79
50092294 CGGGTTAAGC
* * * ** * *
50092304 CCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATT
1 CCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGACT
*
50092369 AAATCCGGGTTATAT
66 AAATCC-GGTTAAAT
* * * *
50092384 CCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGC
1 CCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGA-C
*
50092447 TATATCCGGTTAAAT
65 TAAATCCGGTTAAAT
50092462 CCCGAAGG
1 CCCGAAGG
50092470 TACGTGATTT
Statistics
Matches: 72, Mismatches: 13, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
78 16 0.22
79 48 0.67
80 8 0.11
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.25
Consensus pattern (79 bp):
CCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGACT
AAATCCGGTTAAAT
Found at i:50100283 original size:80 final size:79
Alignment explanation
Indices: 50100199--50100370 Score: 220
Period size: 79 Copynumber: 2.2 Consensus size: 79
50100189 GGACTAAGAT
*
50100199 CCGAAGGCATTTGTGCGAGATA-CAAATTCCGGGTTAAGCCCCGAAGGACTTTGTGCGAGATACT
1 CCGAAGGCATTTGTGCGAGATATCAAA-TCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACT
* *
50100263 AAATCCGGGTTAAGTC
64 AAAACCGGGCTAAGTC
* * * * * * *
50100279 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
*
50100344 AACCGGGCTATGTC
66 AACCGGGCTAAGTC
50100358 CCGAAGGCATTTG
1 CCGAAGGCATTTG
50100371 AACGAGGAGC
Statistics
Matches: 79, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
79 38 0.48
80 38 0.48
81 3 0.04
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
AACCGGGCTAAGTC
Found at i:50100350 original size:39 final size:39
Alignment explanation
Indices: 50100146--50100368 Score: 209
Period size: 40 Copynumber: 5.6 Consensus size: 39
50100136 TTGAATGCTG
* * * * *
50100146 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTA-AGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGA-T-ACTAAA
**
50100186 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATAC-AAA
1 TCCGGGTTAAG-TCCCGAAGGCA-TTGTGCGAGATACTAAA
* *
50100225 TTCCGGGTTAAGCCCCGAAGGACTTTGTGCGAGATACTAAA
1 -TCCGGGTTAAGTCCCGAAGG-CATTGTGCGAGATACTAAA
* *
50100266 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGATACTAAA
* * *
50100306 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAA
* * *
50100345 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
50100369 TGAACGAGGA
Statistics
Matches: 157, Mismatches: 18, Indels: 17
0.82 0.09 0.09
Matches are distributed among these distances:
39 40 0.25
40 103 0.66
41 13 0.08
42 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAA
Found at i:50100388 original size:79 final size:80
Alignment explanation
Indices: 50100226--50100403 Score: 191
Period size: 79 Copynumber: 2.2 Consensus size: 80
50100216 AGATACAAAT
* * * *
50100226 TCCGGGTTAAGCCCCGAAGGACTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGACATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
** * *
50100291 GTGCGAGTTATTAAA
66 GAACGAGTGACTAAA
* * * * *
50100306 TCCGGGTTATGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGACATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
*
50100370 GAACGAG-GAGCTATA
66 GAACGAGTGA-CTAAA
*
50100385 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
50100404 TACGTGATTT
Statistics
Matches: 81, Mismatches: 16, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
78 15 0.19
79 48 0.59
80 18 0.22
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGACATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
GAACGAGTGACTAAA
Found at i:50106397 original size:47 final size:47
Alignment explanation
Indices: 50106344--50106455 Score: 134
Period size: 47 Copynumber: 2.4 Consensus size: 47
50106334 TTCCTTTAAG
* * * * * *
50106344 TATTTAATTTGTCTTAAGTTTATTTAGTTTGTTCTAATTAGTTCAGC
1 TATTTAATATGTCTTAAGTTTATTTAATATGTTCTAATTAATACAAC
* * *
50106391 TATTTAATATGTCCTAAGTTTATTTAATATGTTTTAGTTAATACAAC
1 TATTTAATATGTCTTAAGTTTATTTAATATGTTCTAATTAATACAAC
*
50106438 TATTTAATGTGTCTTAAG
1 TATTTAATATGTCTTAAG
50106456 CTTAGGCAAA
Statistics
Matches: 54, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
47 54 1.00
ACGTcount: A:0.29, C:0.08, G:0.12, T:0.52
Consensus pattern (47 bp):
TATTTAATATGTCTTAAGTTTATTTAATATGTTCTAATTAATACAAC
Found at i:50110149 original size:43 final size:40
Alignment explanation
Indices: 50110051--50110161 Score: 109
Period size: 43 Copynumber: 2.7 Consensus size: 40
50110041 TGTGTTGTCG
* * *
50110051 TGTAAGACCAAGTCTGGAACATTGGCATCGACTTGTTACG
1 TGTAAGACCAAGTCTGGGACAGTGGCATCGACTTGTTACA
* *
50110091 TGTAAGACTC-TGTCTGGGACAGTGGCATCGATATTTGATTACA
1 TGTAAGAC-CAAGTCTGGGACAGTGGCATCG--ACTTG-TTACA
*
50110134 TGTAAGACCACGTCTGGGAC-GTTGGCAT
1 TGTAAGACCAAGTCTGGGACAG-TGGCAT
50110162 TGTACAAGGT
Statistics
Matches: 59, Mismatches: 6, Indels: 9
0.80 0.08 0.12
Matches are distributed among these distances:
40 25 0.42
41 1 0.02
42 6 0.10
43 27 0.46
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (40 bp):
TGTAAGACCAAGTCTGGGACAGTGGCATCGACTTGTTACA
Found at i:50112987 original size:191 final size:190
Alignment explanation
Indices: 50112595--50113013 Score: 429
Period size: 190 Copynumber: 2.2 Consensus size: 190
50112585 CTTACTGCTG
* * * * * *
50112595 TTTTAAAGGTTTAGCCTAGACGGGTAACCTTACATGTATATTTTCAACTGGCCAAGCAATTTGAT
1 TTTTAAAGGTTTAGCCTGGACGGGTAACCTGACATGTATATCTACAACTGACCAAGCAACTTGAT
* **
50112660 GTGTCTTCAAAGGTTTAGCTCGGACAGGTAACCTGATACAAATATATATTTTCAACTCAGATGAG
66 GTGTATTCAAAGGTTTAGCTCGGACAGGTAACCTGA-ACAAATATATACATTCAACTCAGATGAG
* * * * ** * *
50112725 CAATTGATGTACCAAAGATACTTATGACACTAGTTTAGCTCAAATGAGTAACCTATTTTCG
130 CAATTGATATACCAAAGATACTTAGGACACAAATTTAGCTCAAACAAGTAACCTATTGTCA
* * *
50112786 TTTTAAAGGTTTAGCCTGGACGGGTAACCTGACTTGTATA-CTACAACTTTGACCTAGCTACTTG
1 TTTTAAAGGTTTAGCCTGGACGGGTAACCTGACATGTATATCTACAAC--TGACCAAGCAACTTG
* * * *
50112850 ATGTGTATTTAAAGGTTTAGCTTGGACGGGTAACCTG-ACATGAT-TATACATTCAACAT-AGAT
64 ATGTGTATTCAAAGGTTTAGCTCGGACAGGTAACCTGAACA-AATATATACATTCAAC-TCAGAT
* * * * * **
50112912 GGGCAATTGATATATCAAAGATACTTGGGACACAAATTTAGCTTAGACAAGTAATTTGA-TGTCA
127 GAGCAATTGATATACCAAAGATACTTAGGACACAAATTTAGCTCAAACAAGTAACCT-ATTGTCA
* *
50112976 TTTTAAAAGGTTTAACCCGGACGGGTAACCT-A-ATGTAT
1 TTTT-AAAGGTTTAGCCTGGACGGGTAACCTGACATGTAT
50113014 GCTTATAAAT
Statistics
Matches: 188, Mismatches: 34, Indels: 14
0.80 0.14 0.06
Matches are distributed among these distances:
189 5 0.03
190 74 0.39
191 65 0.35
192 44 0.23
ACGTcount: A:0.32, C:0.16, G:0.19, T:0.33
Consensus pattern (190 bp):
TTTTAAAGGTTTAGCCTGGACGGGTAACCTGACATGTATATCTACAACTGACCAAGCAACTTGAT
GTGTATTCAAAGGTTTAGCTCGGACAGGTAACCTGAACAAATATATACATTCAACTCAGATGAGC
AATTGATATACCAAAGATACTTAGGACACAAATTTAGCTCAAACAAGTAACCTATTGTCA
Found at i:50115415 original size:21 final size:21
Alignment explanation
Indices: 50115354--50115402 Score: 98
Period size: 21 Copynumber: 2.3 Consensus size: 21
50115344 GTTTTCTTGT
50115354 TGGTTTAGTGCATTATTTTGA
1 TGGTTTAGTGCATTATTTTGA
50115375 TGGTTTAGTGCATTATTTTGA
1 TGGTTTAGTGCATTATTTTGA
50115396 TGGTTTA
1 TGGTTTA
50115403 AGTGATTTGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.18, C:0.04, G:0.24, T:0.53
Consensus pattern (21 bp):
TGGTTTAGTGCATTATTTTGA
Found at i:50122474 original size:25 final size:25
Alignment explanation
Indices: 50122426--50122477 Score: 77
Period size: 25 Copynumber: 2.1 Consensus size: 25
50122416 GCATAGTTTT
** *
50122426 GGTGCTTGTAGGTTTGGCCTAATTG
1 GGTGCTTGTAGGTTTAACCCAATTG
50122451 GGTGCTTGTAGGTTTAACCCAATTG
1 GGTGCTTGTAGGTTTAACCCAATTG
50122476 GG
1 GG
50122478 GTGGCAAATT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.15, C:0.13, G:0.35, T:0.37
Consensus pattern (25 bp):
GGTGCTTGTAGGTTTAACCCAATTG
Found at i:50123639 original size:48 final size:48
Alignment explanation
Indices: 50123585--50123852 Score: 290
Period size: 48 Copynumber: 5.6 Consensus size: 48
50123575 TGAGATCCTA
* * *
50123585 TGTAAGACCATGTCTGGGACATGGCATTGGCATCGAGATGAGATCTCG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCATCGAGATGTGATCTAG
* * * * *
50123633 TATAAGACCATGTTTGGGACATGGCATCGGCGTTGATATGTG-TGCTAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCATCGAGATGTGAT-CTAG
* * * *
50123681 TGTAAAACCATGTCTGGGACATGGCATCAGCCTCGATG-TGTGAGCTAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCATCGA-GATGTGATCTAG
* * * *
50123729 TGTAAGACCATGTCTAGGACATGGCATCGGCCTCAACG-TGTGAGCTAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCATCGA-GATGTGATCTAG
* * * * * *
50123777 TGTAAGACCATGTCTGGGACATGGAATCGACATTGATATGTGATTTCG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCATCGAGATGTGATCTAG
50123825 TGTAAGACCATGTCTGGGACATGGCATC
1 TGTAAGACCATGTCTGGGACATGGCATC
50123853 ATTATGAGAC
Statistics
Matches: 184, Mismatches: 32, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
47 1 0.01
48 183 0.99
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.27
Consensus pattern (48 bp):
TGTAAGACCATGTCTGGGACATGGCATCGGCATCGAGATGTGATCTAG
Found at i:50123704 original size:96 final size:96
Alignment explanation
Indices: 50123585--50123852 Score: 331
Period size: 96 Copynumber: 2.8 Consensus size: 96
50123575 TGAGATCCTA
* * * *
50123585 TGTAAGACCATGTCTGGGACATGGCATTGGCATCGAGATGAGATCTCGTATAAGACCATGTTTGG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCATCGAGATGTGATCTCGTGTAAGACCATGTCTGG
* ** * *
50123650 GACATGGCATCGGCGTTGATATGTGTGCTAG
66 GACATGGCATCGGCCTCAACATGTGAGCTAG
* * * * * *
50123681 TGTAAAACCATGTCTGGGACATGGCATCAGCCTCGATG-TGTGAGCTAGTGTAAGACCATGTCTA
1 TGTAAGACCATGTCTGGGACATGGCATCGGCATCGA-GATGTGATCTCGTGTAAGACCATGTCTG
*
50123745 GGACATGGCATCGGCCTCAACGTGTGAGCTAG
65 GGACATGGCATCGGCCTCAACATGTGAGCTAG
* * * * *
50123777 TGTAAGACCATGTCTGGGACATGGAATCGACATTGATATGTGATTTCGTGTAAGACCATGTCTGG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCATCGAGATGTGATCTCGTGTAAGACCATGTCTGG
50123842 GACATGGCATC
66 GACATGGCATC
50123853 ATTATGAGAC
Statistics
Matches: 143, Mismatches: 27, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
96 142 0.99
97 1 0.01
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.27
Consensus pattern (96 bp):
TGTAAGACCATGTCTGGGACATGGCATCGGCATCGAGATGTGATCTCGTGTAAGACCATGTCTGG
GACATGGCATCGGCCTCAACATGTGAGCTAG
Found at i:50123754 original size:144 final size:144
Alignment explanation
Indices: 50123585--50123853 Score: 371
Period size: 144 Copynumber: 1.9 Consensus size: 144
50123575 TGAGATCCTA
* * * * * *
50123585 TGTAAGACCATGTCTGGGACATGGCATTGGCATCGA-GATGAGATCTCGTATAAGACCATGTTTG
1 TGTAAGACCATGTCTAGGACATGGCATCGGCATCAACG-TGAGAGCTAGTATAAGACCATGTCTG
* * *
50123649 GGACATGGCATCGGCGTTGATATGTG-TGCTAGTGTAAAACCATGTCTGGGACATGGCATCAGCC
65 GGACATGGAATCGACATTGATATGTGAT-CTAGTGTAAAACCATGTCTGGGACATGGCATCAGCC
50123713 TCGATGTGTGAGCTAG
129 TCGATGTGTGAGCTAG
* * *
50123729 TGTAAGACCATGTCTAGGACATGGCATCGGCCTCAACGTGTGAGCTAGTGTAAGACCATGTCTGG
1 TGTAAGACCATGTCTAGGACATGGCATCGGCATCAACGTGAGAGCTAGTATAAGACCATGTCTGG
* * *
50123794 GACATGGAATCGACATTGATATGTGATTTCGTGTAAGACCATGTCTGGGACATGGCATCA
66 GACATGGAATCGACATTGATATGTGATCTAGTGTAAAACCATGTCTGGGACATGGCATCA
50123854 TTATGAGACA
Statistics
Matches: 108, Mismatches: 15, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
144 106 0.98
145 2 0.02
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.27
Consensus pattern (144 bp):
TGTAAGACCATGTCTAGGACATGGCATCGGCATCAACGTGAGAGCTAGTATAAGACCATGTCTGG
GACATGGAATCGACATTGATATGTGATCTAGTGTAAAACCATGTCTGGGACATGGCATCAGCCTC
GATGTGTGAGCTAG
Found at i:50133608 original size:30 final size:30
Alignment explanation
Indices: 50133562--50133634 Score: 83
Period size: 30 Copynumber: 2.4 Consensus size: 30
50133552 GAGGTGACAT
* * *
50133562 GAAAACCAAGACAAAGAAGCCCAAGACAAG
1 GAAATCCAAGATAAAGAAACCCAAGACAAG
* * * *
50133592 GAAATCCTAGATAAAGAAATCCAAGATACG
1 GAAATCCAAGATAAAGAAACCCAAGACAAG
50133622 GAAATCCAAGATA
1 GAAATCCAAGATA
50133635 CAATATTATA
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
30 35 1.00
ACGTcount: A:0.53, C:0.19, G:0.18, T:0.10
Consensus pattern (30 bp):
GAAATCCAAGATAAAGAAACCCAAGACAAG
Found at i:50133612 original size:15 final size:15
Alignment explanation
Indices: 50133562--50133634 Score: 65
Period size: 15 Copynumber: 4.9 Consensus size: 15
50133552 GAGGTGACAT
* *
50133562 GAAAACCAAGACAAA
1 GAAATCCAAGATAAA
** * *
50133577 GAAGCCCAAGACAAG
1 GAAATCCAAGATAAA
*
50133592 GAAATCCTAGATAAA
1 GAAATCCAAGATAAA
**
50133607 GAAATCCAAGATACG
1 GAAATCCAAGATAAA
50133622 GAAATCCAAGATA
1 GAAATCCAAGATA
50133635 CAATATTATA
Statistics
Matches: 47, Mismatches: 11, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
15 47 1.00
ACGTcount: A:0.53, C:0.19, G:0.18, T:0.10
Consensus pattern (15 bp):
GAAATCCAAGATAAA
Found at i:50143197 original size:73 final size:73
Alignment explanation
Indices: 50143078--50143226 Score: 246
Period size: 73 Copynumber: 2.0 Consensus size: 73
50143068 ATGACACTCA
* ** *
50143078 AGAATTTTGAAAATAATTATTCCCTAGGTTGTTCAGAACCTACAAGGAAAAAACTACTTGGTCAA
1 AGAATTTCGAAAATAATTACACCCTAAGTTGTTCAGAACCTACAAGGAAAAAACTACTTGGTCAA
50143143 TATTATTG
66 TATTATTG
50143151 AGAATTTCGAAAATAATTACACCCTAAGTTGTTTC-GAACCTACAAGGAAAAAACTACTTGGTCA
1 AGAATTTCGAAAATAATTACACCCTAAGTTG-TTCAGAACCTACAAGGAAAAAACTACTTGGTCA
50143215 ATATTATTG
65 ATATTATTG
50143224 AGA
1 AGA
50143227 TGGCGTTGAA
Statistics
Matches: 71, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
73 68 0.96
74 3 0.04
ACGTcount: A:0.40, C:0.15, G:0.15, T:0.31
Consensus pattern (73 bp):
AGAATTTCGAAAATAATTACACCCTAAGTTGTTCAGAACCTACAAGGAAAAAACTACTTGGTCAA
TATTATTG
Found at i:50144303 original size:22 final size:22
Alignment explanation
Indices: 50144278--50144365 Score: 106
Period size: 23 Copynumber: 3.9 Consensus size: 22
50144268 TTAGGGTTTT
*
50144278 TTAAGGTTTAATTA-ATTTAGGG
1 TTAAGGTTT-TTTAGATTTAGGG
50144300 TTAAGGTTTTTTAGGATTTAGGG
1 TTAAGGTTTTTTA-GATTTAGGG
*
50144323 TTAGGGTTTTTTAGGATTTAGGG
1 TTAAGGTTTTTTA-GATTTAGGG
*
50144346 TTAGGGTTTTTTAGGATTTA
1 TTAAGGTTTTTTA-GATTTA
50144366 TAATTTAAAG
Statistics
Matches: 62, Mismatches: 2, Indels: 3
0.93 0.03 0.04
Matches are distributed among these distances:
21 3 0.05
22 9 0.15
23 50 0.81
ACGTcount: A:0.23, C:0.00, G:0.28, T:0.49
Consensus pattern (22 bp):
TTAAGGTTTTTTAGATTTAGGG
Found at i:50144322 original size:23 final size:23
Alignment explanation
Indices: 50144292--50144365 Score: 139
Period size: 23 Copynumber: 3.2 Consensus size: 23
50144282 GGTTTAATTA
*
50144292 ATTTAGGGTTAAGGTTTTTTAGG
1 ATTTAGGGTTAGGGTTTTTTAGG
50144315 ATTTAGGGTTAGGGTTTTTTAGG
1 ATTTAGGGTTAGGGTTTTTTAGG
50144338 ATTTAGGGTTAGGGTTTTTTAGG
1 ATTTAGGGTTAGGGTTTTTTAGG
50144361 ATTTA
1 ATTTA
50144366 TAATTTAAAG
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
23 50 1.00
ACGTcount: A:0.20, C:0.00, G:0.31, T:0.49
Consensus pattern (23 bp):
ATTTAGGGTTAGGGTTTTTTAGG
Found at i:50144337 original size:16 final size:16
Alignment explanation
Indices: 50144257--50144324 Score: 50
Period size: 16 Copynumber: 4.2 Consensus size: 16
50144247 TTTTGCTCTT
50144257 GTTTTTTAGGGTTAGG
1 GTTTTTTAGGGTTAGG
*
50144273 GTTTTTTAAGGTTTA--
1 GTTTTTT-AGGGTTAGG
* * *
50144288 ATTAATTTAGGGTTAAG
1 GTT-TTTTAGGGTTAGG
*
50144305 GTTTTTTAGGATTTAGG
1 GTTTTTTAGG-GTTAGG
50144322 GTT
1 GTT
50144325 AGGGTTTTTT
Statistics
Matches: 39, Mismatches: 8, Indels: 9
0.70 0.14 0.16
Matches are distributed among these distances:
15 8 0.21
16 16 0.41
17 15 0.38
ACGTcount: A:0.21, C:0.00, G:0.28, T:0.51
Consensus pattern (16 bp):
GTTTTTTAGGGTTAGG
Found at i:50144381 original size:46 final size:45
Alignment explanation
Indices: 50144292--50144380 Score: 106
Period size: 46 Copynumber: 1.9 Consensus size: 45
50144282 GGTTTAATTA
** *
50144292 ATTTAGGGTTAAGGTTTTTTAGGATTTAGGGTTAGGGTTTTTTAGG
1 ATTTAGGGTTAAGGTTTTTTAGGATTTAAAGTTAAGG-TTTTTAGG
* *
50144338 ATTTAGGGTTAGGGTTTTTTAGGATTTATAATTTAAAGGTTTT
1 ATTTAGGGTTAAGGTTTTTTAGGATTTA-AAGTT-AAGGTTTT
50144381 AAGAAAAAAT
Statistics
Matches: 36, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
46 27 0.75
47 6 0.17
48 3 0.08
ACGTcount: A:0.22, C:0.00, G:0.28, T:0.49
Consensus pattern (45 bp):
ATTTAGGGTTAAGGTTTTTTAGGATTTAAAGTTAAGGTTTTTAGG
Found at i:50144489 original size:16 final size:16
Alignment explanation
Indices: 50144468--50144499 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
50144458 ATTAAGGTTA
50144468 ATTGATTAAATTAGGG
1 ATTGATTAAATTAGGG
50144484 ATTGATTAAATTAGGG
1 ATTGATTAAATTAGGG
50144500 TTAATTGATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.38, C:0.00, G:0.25, T:0.38
Consensus pattern (16 bp):
ATTGATTAAATTAGGG
Found at i:50144508 original size:19 final size:19
Alignment explanation
Indices: 50144458--50144527 Score: 83
Period size: 19 Copynumber: 3.8 Consensus size: 19
50144448 AGTTTAGGGT
*
50144458 ATTAAGGTTAATTGATTAA
1 ATTAGGGTTAATTGATTAA
50144477 ATTAGGG---ATTGATTAA
1 ATTAGGGTTAATTGATTAA
50144493 ATTAGGGTTAATTGATTAA
1 ATTAGGGTTAATTGATTAA
* **
50144512 TTTACAGTTAATTGAT
1 ATTAGGGTTAATTGAT
50144528 ACATAATCGT
Statistics
Matches: 44, Mismatches: 4, Indels: 6
0.81 0.07 0.11
Matches are distributed among these distances:
16 16 0.36
19 28 0.64
ACGTcount: A:0.37, C:0.01, G:0.19, T:0.43
Consensus pattern (19 bp):
ATTAGGGTTAATTGATTAA
Found at i:50145292 original size:126 final size:126
Alignment explanation
Indices: 50145062--50145316 Score: 375
Period size: 126 Copynumber: 2.0 Consensus size: 126
50145052 TTTTTGCAAG
* * * * * *
50145062 AATAATTTTGAGTAGACGTTTCTGAATAAATAATGTCGAAAACACTTCAGGCAGGATTCACTGTT
1 AATAATTCTGAGTAGACGTTTCTGAACAAATAATGTCAAAAACACTTCAAGCAAGATACACTGTT
* * *
50145127 AGCAAAATTTCTAAAAAAAGCTCCCACGTTAACGTTCTTTTGCTTCAGTAGTTCGTAGAAA
66 AGCAAAATTTCTAAAAAAAGCTCCCACGTGAACGCTCTTTTGCTACAGTAGTTCGTAGAAA
* * *
50145188 AATAATTCTGAGTAGATGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGCAAGATACACTGTT
1 AATAATTCTGAGTAGACGTTTCTGAACAAATAATGTCAAAAACACTTCAAGCAAGATACACTGTT
* * *
50145253 AGTAAAATTTCTAAAAAAAGCTCCCATGTGGACGCTCTTTTGCTACAGTAGTTCGTAGAAA
66 AGCAAAATTTCTAAAAAAAGCTCCCACGTGAACGCTCTTTTGCTACAGTAGTTCGTAGAAA
50145314 AAT
1 AAT
50145317 GAGGCTATAA
Statistics
Matches: 114, Mismatches: 15, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
126 114 1.00
ACGTcount: A:0.36, C:0.16, G:0.17, T:0.31
Consensus pattern (126 bp):
AATAATTCTGAGTAGACGTTTCTGAACAAATAATGTCAAAAACACTTCAAGCAAGATACACTGTT
AGCAAAATTTCTAAAAAAAGCTCCCACGTGAACGCTCTTTTGCTACAGTAGTTCGTAGAAA
Found at i:50147834 original size:40 final size:40
Alignment explanation
Indices: 50147734--50147998 Score: 286
Period size: 40 Copynumber: 6.7 Consensus size: 40
50147724 GCTCCTCGTT
* * * *
50147734 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* **
50147774 C-AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
50147813 CGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
50147853 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * *
50147893 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCA
** * * * *
50147933 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
50147974 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
50147999 CAGCATTCAA
Statistics
Matches: 197, Mismatches: 22, Indels: 12
0.85 0.10 0.05
Matches are distributed among these distances:
39 39 0.20
40 143 0.73
41 15 0.08
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:50147958 original size:80 final size:80
Alignment explanation
Indices: 50147701--50147998 Score: 263
Period size: 80 Copynumber: 3.7 Consensus size: 80
50147691 AAATCACGTA
* ** * * *
50147701 CCTTCGGGATTTAA-CCGGATATAGCTC-CTCGTTCAAATGCCTTCGGGACATAGCCCGG-TTTT
1 CCTTCGGGACTTAACCCGGATATAG-TCACTCGCACAAA-GCCTTCGGGACTTAACCCGGAATTT
* *
50147763 AGTAACTCACAC-AATG
64 AATAACTCGCACAAATG
* * * *
50147779 CCTTCGGGACATAACCCGGATTTA-ACAACTCGCACGAATGCCTTCGGGACTTAACCCGG-ATTT
1 CCTTCGGGACTTAACCCGGATATAGTC-ACTCGCAC-AAAGCCTTCGGGACTTAACCCGGAATTT
*
50147842 AATAACTCGCACGAATG
64 AATAACTCGCACAAATG
* *
50147859 CCTTCGGGACTTAACCCGGATTTAGT-ATCTCGCACAAAGGCCTTCGGGGCTTAACCCGGAATTT
1 CCTTCGGGACTTAACCCGGATATAGTCA-CTCGCACAAA-GCCTTCGGGACTTAACCCGGAATTT
* *
50147923 -GTATCTCGCACAAATG
64 AATAACTCGCACAAATG
** * * *
50147939 CCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 CCTTCGGGA-CTTAACCCGGATATAGTCAC-TCGCACAAAGCCTTCGGGACTTAACCCGGA
50147999 CAGCATTCAA
Statistics
Matches: 182, Mismatches: 26, Indels: 22
0.79 0.11 0.10
Matches are distributed among these distances:
77 1 0.01
78 12 0.07
79 50 0.27
80 106 0.58
81 13 0.07
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (80 bp):
CCTTCGGGACTTAACCCGGATATAGTCACTCGCACAAAGCCTTCGGGACTTAACCCGGAATTTAA
TAACTCGCACAAATG
Found at i:50148007 original size:41 final size:41
Alignment explanation
Indices: 50147930--50148007 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
50147920 TTTGTATCTC
* * *
50147930 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
50147971 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
50148008 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:50155363 original size:40 final size:40
Alignment explanation
Indices: 50155263--50155527 Score: 286
Period size: 40 Copynumber: 6.7 Consensus size: 40
50155253 GCTCCTCGTT
* * * *
50155263 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* **
50155303 C-AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
50155342 CGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
50155382 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * *
50155422 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCA
** * * * *
50155462 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
50155503 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
50155528 CAGCATTCAA
Statistics
Matches: 197, Mismatches: 22, Indels: 12
0.85 0.10 0.05
Matches are distributed among these distances:
39 39 0.20
40 143 0.73
41 15 0.08
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:50155487 original size:80 final size:80
Alignment explanation
Indices: 50155230--50155527 Score: 263
Period size: 80 Copynumber: 3.7 Consensus size: 80
50155220 AAATCACGTA
* ** * * *
50155230 CCTTCGGGATTTAA-CCGGATATAGCTC-CTCGTTCAAATGCCTTCGGGACATAGCCCGG-TTTT
1 CCTTCGGGACTTAACCCGGATATAG-TCACTCGCACAAA-GCCTTCGGGACTTAACCCGGAATTT
* *
50155292 AGTAACTCACAC-AATG
64 AATAACTCGCACAAATG
* * * *
50155308 CCTTCGGGACATAACCCGGATTTA-ACAACTCGCACGAATGCCTTCGGGACTTAACCCGG-ATTT
1 CCTTCGGGACTTAACCCGGATATAGTC-ACTCGCAC-AAAGCCTTCGGGACTTAACCCGGAATTT
*
50155371 AATAACTCGCACGAATG
64 AATAACTCGCACAAATG
* *
50155388 CCTTCGGGACTTAACCCGGATTTAGT-ATCTCGCACAAAGGCCTTCGGGGCTTAACCCGGAATTT
1 CCTTCGGGACTTAACCCGGATATAGTCA-CTCGCACAAA-GCCTTCGGGACTTAACCCGGAATTT
* *
50155452 -GTATCTCGCACAAATG
64 AATAACTCGCACAAATG
** * * *
50155468 CCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 CCTTCGGGA-CTTAACCCGGATATAGTCAC-TCGCACAAAGCCTTCGGGACTTAACCCGGA
50155528 CAGCATTCAA
Statistics
Matches: 182, Mismatches: 26, Indels: 22
0.79 0.11 0.10
Matches are distributed among these distances:
77 1 0.01
78 12 0.07
79 50 0.27
80 106 0.58
81 13 0.07
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (80 bp):
CCTTCGGGACTTAACCCGGATATAGTCACTCGCACAAAGCCTTCGGGACTTAACCCGGAATTTAA
TAACTCGCACAAATG
Found at i:50155536 original size:41 final size:41
Alignment explanation
Indices: 50155459--50155536 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
50155449 TTTGTATCTC
* * *
50155459 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
50155500 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
50155537 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:50159504 original size:18 final size:18
Alignment explanation
Indices: 50159478--50159518 Score: 64
Period size: 18 Copynumber: 2.3 Consensus size: 18
50159468 GACTAGGAAA
* *
50159478 AGGAAACATATAAGGGTT
1 AGGATACATATAAGGGCT
50159496 AGGATACATATAAGGGCT
1 AGGATACATATAAGGGCT
50159514 AGGAT
1 AGGAT
50159519 GCGCACCTAG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.41, C:0.07, G:0.29, T:0.22
Consensus pattern (18 bp):
AGGATACATATAAGGGCT
Found at i:50161184 original size:49 final size:49
Alignment explanation
Indices: 50161131--50161242 Score: 122
Period size: 48 Copynumber: 2.3 Consensus size: 49
50161121 ATGCAAACAT
* *
50161131 CATAAACGAAAAAAAAAATCAAGCAATATTG-AAATTTTAATTATAA-TTG
1 CATAAATGAAAAAAAAAATCAAACAATATTGCAAA-TTTAATTA-AATTTG
* * * *
50161180 CATAAATG-AATAAAATATCAAATAGTATTGCAAATTTAATTAAATTTG
1 CATAAATGAAAAAAAAAATCAAACAATATTGCAAATTTAATTAAATTTG
*
50161228 CATAAATTAAAAAAA
1 CATAAATGAAAAAAA
50161243 TATTGAATAG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
47 2 0.04
48 35 0.67
49 15 0.29
ACGTcount: A:0.55, C:0.07, G:0.07, T:0.30
Consensus pattern (49 bp):
CATAAATGAAAAAAAAAATCAAACAATATTGCAAATTTAATTAAATTTG
Found at i:50161219 original size:48 final size:47
Alignment explanation
Indices: 50161157--50161266 Score: 141
Period size: 48 Copynumber: 2.3 Consensus size: 47
50161147 AATCAAGCAA
*
50161157 TATTGAAATTTTAATTATAA-TTGCATAAATGAATAAAATATCAAATAG
1 TATTGAAA-TTTAATTA-AATTTGCATAAATGAAAAAAATATCAAATAG
* **
50161205 TATTGCAAATTTAATTAAATTTGCATAAATTAAAAAAATATTGAATAG
1 TATTG-AAATTTAATTAAATTTGCATAAATGAAAAAAATATCAAATAG
50161253 TATTGGAAATTTAA
1 TATT-GAAATTTAA
50161267 AATTATCACT
Statistics
Matches: 55, Mismatches: 4, Indels: 6
0.85 0.06 0.09
Matches are distributed among these distances:
47 2 0.04
48 49 0.89
49 4 0.07
ACGTcount: A:0.49, C:0.04, G:0.09, T:0.38
Consensus pattern (47 bp):
TATTGAAATTTAATTAAATTTGCATAAATGAAAAAAATATCAAATAG
Found at i:50161400 original size:15 final size:16
Alignment explanation
Indices: 50161368--50161400 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
50161358 TTTTTACTTT
50161368 AAAAAAATTAAATTCAA
1 AAAAAAATTAAA-TCAA
50161385 AAAAAAATTAAA-CAA
1 AAAAAAATTAAATCAA
50161400 A
1 A
50161401 GAATTTTGAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 4 0.25
17 12 0.75
ACGTcount: A:0.76, C:0.06, G:0.00, T:0.18
Consensus pattern (16 bp):
AAAAAAATTAAATCAA
Found at i:50167575 original size:19 final size:19
Alignment explanation
Indices: 50167553--50167596 Score: 88
Period size: 19 Copynumber: 2.3 Consensus size: 19
50167543 TATAACAACA
50167553 ACATTCATAGTTATAGAGT
1 ACATTCATAGTTATAGAGT
50167572 ACATTCATAGTTATAGAGT
1 ACATTCATAGTTATAGAGT
50167591 ACATTC
1 ACATTC
50167597 TTCATTAAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.36, C:0.14, G:0.14, T:0.36
Consensus pattern (19 bp):
ACATTCATAGTTATAGAGT
Found at i:50172759 original size:50 final size:50
Alignment explanation
Indices: 50172705--50172807 Score: 179
Period size: 50 Copynumber: 2.1 Consensus size: 50
50172695 AGTCTGAATC
*
50172705 AACAACTTGTTTGCATCCAATAACCTGCATTAGAGACATATTTTGAATTA
1 AACAACTTGTTTGCATCCAATAACCTACATTAGAGACATATTTTGAATTA
* *
50172755 AACAACTTGTTTGCATCCATTACCCTACATTAGAGACATATTTTGAATTA
1 AACAACTTGTTTGCATCCAATAACCTACATTAGAGACATATTTTGAATTA
50172805 AAC
1 AAC
50172808 TTAGGCTAAT
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
50 50 1.00
ACGTcount: A:0.36, C:0.19, G:0.11, T:0.34
Consensus pattern (50 bp):
AACAACTTGTTTGCATCCAATAACCTACATTAGAGACATATTTTGAATTA
Found at i:50174480 original size:129 final size:129
Alignment explanation
Indices: 50174249--50174508 Score: 396
Period size: 129 Copynumber: 2.0 Consensus size: 129
50174239 TTGATTAATT
* * * *
50174249 AAATTCCATTAATGCAATTTAAACCAGTGTAGCTGATTCATTGACTTTTTGTTGTTGATTGTTCA
1 AAATTCCATTAATGCAATTAAAACCAGTGCAGCTGATTCATTGACTTCTTGTTATTGATTGTTCA
*
50174314 CTATTCTTTTACCAATACTAAACCTAGAAACGGTGGTTCTTTTATTTGAGATTTTTTATCAATAA
66 CTATTCTTTTACCAATACTAAACCTAGAAACGGTGGTT-TTTTATTTCAGATTTTTTATCAATAA
* * *
50174379 AAATTCCATTAATGCTATTAAAACCATTGCAGGTGATTCATTGACTTCTT-TTATTGATTGTTCA
1 AAATTCCATTAATGCAATTAAAACCAGTGCAGCTGATTCATTGACTTCTTGTTATTGATTGTTCA
* * * *
50174443 CTTTTCTTTTATCAATACTAAAGCTAGAAATGGTGGTTTTTTATTTCAGATTTTTTATCAATAA
66 CTATTCTTTTACCAATACTAAACCTAGAAACGGTGGTTTTTTATTTCAGATTTTTTATCAATAA
50174507 AA
1 AA
50174509 TTTTCATTCC
Statistics
Matches: 118, Mismatches: 12, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
128 27 0.23
129 47 0.40
130 44 0.37
ACGTcount: A:0.30, C:0.14, G:0.12, T:0.44
Consensus pattern (129 bp):
AAATTCCATTAATGCAATTAAAACCAGTGCAGCTGATTCATTGACTTCTTGTTATTGATTGTTCA
CTATTCTTTTACCAATACTAAACCTAGAAACGGTGGTTTTTTATTTCAGATTTTTTATCAATAA
Found at i:50177611 original size:30 final size:29
Alignment explanation
Indices: 50177542--50177612 Score: 79
Period size: 30 Copynumber: 2.4 Consensus size: 29
50177532 ATCGGCATAG
* *
50177542 AGTGCCTGGTAACCGTAACACTGGTACAA
1 AGTGCCTGATAACCGTAACACTGGCACAA
* * *
50177571 AGTACCTGATAACTGTAATCACTGGCACAT
1 AGTGCCTGATAACCGTAA-CACTGGCACAA
*
50177601 AGTGCTTGATAA
1 AGTGCCTGATAA
50177613 ACCCTAATGA
Statistics
Matches: 34, Mismatches: 7, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
29 15 0.44
30 19 0.56
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.25
Consensus pattern (29 bp):
AGTGCCTGATAACCGTAACACTGGCACAA
Found at i:50182797 original size:6 final size:5
Alignment explanation
Indices: 50182766--50182806 Score: 64
Period size: 5 Copynumber: 7.8 Consensus size: 5
50182756 AATATGTTTG
50182766 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAAT ATAAAT AAAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT -AAAAT A-AAAT AAAA
50182807 GTATAAATTG
Statistics
Matches: 34, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
5 24 0.71
6 10 0.29
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
AAAAT
Found at i:50182856 original size:22 final size:22
Alignment explanation
Indices: 50182824--50182867 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
50182814 TTGGGTATGA
*
50182824 TCATTTTGCATGTTTGATTAAG
1 TCATTTCGCATGTTTGATTAAG
50182846 TCATTTCGCATGTTTGATTAAG
1 TCATTTCGCATGTTTGATTAAG
50182868 CCTAAATTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.23, C:0.11, G:0.18, T:0.48
Consensus pattern (22 bp):
TCATTTCGCATGTTTGATTAAG
Found at i:50185556 original size:17 final size:18
Alignment explanation
Indices: 50185536--50185576 Score: 57
Period size: 17 Copynumber: 2.3 Consensus size: 18
50185526 TTAGAGGAAT
*
50185536 AAAAATAAATAAATAAA-
1 AAAAATAAATAAAGAAAG
*
50185553 AAAAGTAAATAAAGAAAG
1 AAAAATAAATAAAGAAAG
50185571 AAAAAT
1 AAAAAT
50185577 GAACAAATGA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
17 15 0.75
18 5 0.25
ACGTcount: A:0.78, C:0.00, G:0.07, T:0.15
Consensus pattern (18 bp):
AAAAATAAATAAAGAAAG
Found at i:50188315 original size:29 final size:28
Alignment explanation
Indices: 50188279--50188356 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
50188269 TCATGAGATT
50188279 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
*
50188309 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
50188336 TGGCACTAAGTGTGCGCGGTT
1 -GGCACTAAGTGTGCG-GGTT
50188357 GATTATTAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 5 0.12
29 35 0.81
30 3 0.07
ACGTcount: A:0.26, C:0.15, G:0.31, T:0.28
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:50188650 original size:174 final size:174
Alignment explanation
Indices: 50188309--50188809 Score: 941
Period size: 174 Copynumber: 2.9 Consensus size: 174
50188299 AAATTGTACA
*
50188309 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
50188374 TGTGCGAACCCAATATATA-TTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
50188438 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
* *
50188482 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGCGGTTGATTATTGAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
50188547 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
50188612 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
50188656 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
* * *
50188721 TGTGCGAACTCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
50188786 TTTTGGACAGCGGAAAAGGTAAGT
131 TTTTGGACAGCGGAAAAGGTAAGT
50188810 ACCTTGAGTT
Statistics
Matches: 319, Mismatches: 8, Indels: 1
0.97 0.02 0.00
Matches are distributed among these distances:
173 81 0.25
174 238 0.75
ACGTcount: A:0.30, C:0.14, G:0.25, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:50192074 original size:47 final size:47
Alignment explanation
Indices: 50192000--50192093 Score: 125
Period size: 47 Copynumber: 2.0 Consensus size: 47
50191990 TTTGTATTCT
* * *
50192000 GATATTTAGAATGCAAAACCTTTTCTGATCAATATTTGAGAACATAA
1 GATATCTAGAACGCAAAACCTTCTCTGATCAATATTTGAGAACATAA
* ** *
50192047 GATATCTAGAACGCAAGACCTTCTCTGATTGATATTTGAGCACATAA
1 GATATCTAGAACGCAAAACCTTCTCTGATCAATATTTGAGAACATAA
50192094 CATTACCATG
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
47 40 1.00
ACGTcount: A:0.37, C:0.16, G:0.15, T:0.32
Consensus pattern (47 bp):
GATATCTAGAACGCAAAACCTTCTCTGATCAATATTTGAGAACATAA
Found at i:50195735 original size:29 final size:29
Alignment explanation
Indices: 50195667--50195738 Score: 81
Period size: 29 Copynumber: 2.5 Consensus size: 29
50195657 ATCCACCACT
* * *
50195667 AATACATAGTACCTGATAACTGTAACATC
1 AATACAAAGTACCTGATAAATGTAACACC
* * *
50195696 AGTACAGAGTACCTGATAAATGTAATACC
1 AATACAAAGTACCTGATAAATGTAACACC
*
50195725 AATTCAAAGTACCT
1 AATACAAAGTACCT
50195739 AAACTGTAAT
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
29 35 1.00
ACGTcount: A:0.42, C:0.19, G:0.12, T:0.26
Consensus pattern (29 bp):
AATACAAAGTACCTGATAAATGTAACACC
Found at i:50197413 original size:21 final size:21
Alignment explanation
Indices: 50197389--50197458 Score: 52
Period size: 21 Copynumber: 3.2 Consensus size: 21
50197379 TGATCTGTAC
50197389 TCATTGAGTTGTGGTCTGAGT
1 TCATTGAGTTGTGGTCTGAGT
* * **
50197410 TCA-TGATATATGTGACATCTGAAC
1 TCATTGA-GT-TGTG--GTCTGAGT
*
50197434 TCATTGAGTTGCGGTCTGAGT
1 TCATTGAGTTGTGGTCTGAGT
50197455 TCAT
1 TCAT
50197459 GATGTATGTG
Statistics
Matches: 35, Mismatches: 9, Indels: 10
0.65 0.17 0.19
Matches are distributed among these distances:
20 3 0.09
21 13 0.37
22 4 0.11
23 3 0.09
24 9 0.26
25 3 0.09
ACGTcount: A:0.21, C:0.14, G:0.26, T:0.39
Consensus pattern (21 bp):
TCATTGAGTTGTGGTCTGAGT
Found at i:50197437 original size:45 final size:45
Alignment explanation
Indices: 50197381--50197471 Score: 155
Period size: 45 Copynumber: 2.0 Consensus size: 45
50197371 GAATTATGTG
* *
50197381 ATCTGTACTCATTGAGTTGTGGTCTGAGTTCATGATATATGTGAC
1 ATCTGAACTCATTGAGTTGCGGTCTGAGTTCATGATATATGTGAC
*
50197426 ATCTGAACTCATTGAGTTGCGGTCTGAGTTCATGATGTATGTGAC
1 ATCTGAACTCATTGAGTTGCGGTCTGAGTTCATGATATATGTGAC
50197471 A
1 A
50197472 CATGTTTTTG
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 43 1.00
ACGTcount: A:0.23, C:0.14, G:0.25, T:0.37
Consensus pattern (45 bp):
ATCTGAACTCATTGAGTTGCGGTCTGAGTTCATGATATATGTGAC
Found at i:50203882 original size:45 final size:45
Alignment explanation
Indices: 50203813--50203898 Score: 136
Period size: 45 Copynumber: 1.9 Consensus size: 45
50203803 ATGTGATCTG
*
50203813 AACTCATTAAGTTGTGGTCTGAGTTCATGATATACGTGACATCCA
1 AACTCATTAAGTTGTGGTCAGAGTTCATGATATACGTGACATCCA
* * *
50203858 AACTCATTGAGTTGTGGTCAGAGTTCATGATGTATGTGACA
1 AACTCATTAAGTTGTGGTCAGAGTTCATGATATACGTGACA
50203899 CATGTTTTGG
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
45 37 1.00
ACGTcount: A:0.28, C:0.15, G:0.23, T:0.34
Consensus pattern (45 bp):
AACTCATTAAGTTGTGGTCAGAGTTCATGATATACGTGACATCCA
Found at i:50211599 original size:47 final size:47
Alignment explanation
Indices: 50211540--50211965 Score: 620
Period size: 47 Copynumber: 9.1 Consensus size: 47
50211530 TTAGGATTTT
* ** * * *
50211540 ATGTGATAAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCAA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
50211587 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
50211634 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCTGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
50211681 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATAGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
50211728 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
50211775 ATGTGATGAATGTGAACATGCATATGTGTGATAAGACTGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
50211822 ATGTGATGAATGTGAATATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
50211869 ATGTGATGAATGTGAACATGCATATATGTGATGAGGCAGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * * * *
50211916 ATGTGATGAACGTGGAA-GTGTATATATGTGGTAAAGCTGAATGGCTA
1 ATGTGATGAATGT-GAACATGCATATATGTGATAAGGCCGAATGGCCA
50211963 ATG
1 ATG
50211966 CGAAATGTGT
Statistics
Matches: 350, Mismatches: 28, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
47 347 0.99
48 3 0.01
ACGTcount: A:0.34, C:0.10, G:0.29, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:50211992 original size:46 final size:46
Alignment explanation
Indices: 50211939--50212029 Score: 137
Period size: 46 Copynumber: 2.0 Consensus size: 46
50211929 GGAAGTGTAT
** *
50211939 ATATGTGGTAAAGCTGAATGGCTAATGCGAAATGTGTATGAGATGG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAATATGTATGAGATGG
* *
50211985 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAATATGTATGAGATG
50212030 TGTACATATA
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 40 1.00
ACGTcount: A:0.34, C:0.07, G:0.31, T:0.29
Consensus pattern (46 bp):
ATATGTGGTAAAGCCAAATGGCTAATGCGAAATATGTATGAGATGG
Found at i:50230908 original size:40 final size:40
Alignment explanation
Indices: 50230864--50230940 Score: 154
Period size: 40 Copynumber: 1.9 Consensus size: 40
50230854 ACATGGTATG
50230864 AAGAGCTTGGGTTTCCCTTTTATTTATTTATTTATTTATC
1 AAGAGCTTGGGTTTCCCTTTTATTTATTTATTTATTTATC
50230904 AAGAGCTTGGGTTTCCCTTTTATTTATTTATTTATTT
1 AAGAGCTTGGGTTTCCCTTTTATTTATTTATTTATTT
50230941 CTTTTCTTTT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.19, C:0.12, G:0.13, T:0.56
Consensus pattern (40 bp):
AAGAGCTTGGGTTTCCCTTTTATTTATTTATTTATTTATC
Found at i:50231399 original size:65 final size:67
Alignment explanation
Indices: 50231286--50231421 Score: 186
Period size: 65 Copynumber: 2.1 Consensus size: 67
50231276 TGGTTGTTCG
*
50231286 TTGTCCTCCTTATTCTACTCTATTTTCAAATGTCATCCTCTCGATTTAATAACCCCTTTCGGGGG
1 TTGTCCTCCTTATTCTACTCTATTTTCAAATGTCATCCTCTCGATTTAATAACCCCTTTCGGGGC
50231351 CC
66 CC
* * ** * * *
50231353 TTGT-CTCCTTGTTCTGCTCTATTTT-TGATGTCCTCCTCTCGGTTTAATAACCCCTTTTGGGGC
1 TTGTCCTCCTTATTCTACTCTATTTTCAAATGTCATCCTCTCGATTTAATAACCCCTTTCGGGGC
50231416 CC
66 CC
50231418 TTGT
1 TTGT
50231422 TTGAGCTTTG
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
65 38 0.62
66 19 0.31
67 4 0.07
ACGTcount: A:0.13, C:0.29, G:0.15, T:0.43
Consensus pattern (67 bp):
TTGTCCTCCTTATTCTACTCTATTTTCAAATGTCATCCTCTCGATTTAATAACCCCTTTCGGGGC
CC
Found at i:50233200 original size:5 final size:5
Alignment explanation
Indices: 50233185--50233220 Score: 54
Period size: 5 Copynumber: 7.2 Consensus size: 5
50233175 CATAATTAAT
* *
50233185 TCATA CCATA TAATA TCATA TCATA TCATA TCATA T
1 TCATA TCATA TCATA TCATA TCATA TCATA TCATA T
50233221 ATTTTCTTAT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.42, C:0.19, G:0.00, T:0.39
Consensus pattern (5 bp):
TCATA
Found at i:50236185 original size:13 final size:13
Alignment explanation
Indices: 50236167--50236191 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
50236157 TAATGGTATA
50236167 TTGAATCCATGAT
1 TTGAATCCATGAT
50236180 TTGAATCCATGA
1 TTGAATCCATGA
50236192 AAATTTAGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TTGAATCCATGAT
Found at i:50238095 original size:25 final size:25
Alignment explanation
Indices: 50238067--50238145 Score: 85
Period size: 25 Copynumber: 3.3 Consensus size: 25
50238057 CTAATGGCCG
50238067 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
* * * *
50238092 ATGTGAT-AAGGCCGAATG-GCA-A-
1 ATGTGATGAATG-TGAAAGTGTATAT
50238114 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
50238139 ATGTGAT
1 ATGTGAT
50238146 AAGGCCTAAT
Statistics
Matches: 41, Mismatches: 8, Indels: 10
0.69 0.14 0.17
Matches are distributed among these distances:
22 11 0.27
23 6 0.15
24 6 0.15
25 18 0.44
ACGTcount: A:0.35, C:0.04, G:0.29, T:0.32
Consensus pattern (25 bp):
ATGTGATGAATGTGAAAGTGTATAT
Found at i:50238095 original size:47 final size:47
Alignment explanation
Indices: 50238042--50238195 Score: 272
Period size: 47 Copynumber: 3.3 Consensus size: 47
50238032 ACAAGATATG
50238042 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
* **
50238089 TATATGTGATAAGGCCGAATGGCAAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
*
50238136 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGGGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
50238183 TATATGTGATAAG
1 TATATGTGATAAG
50238196 TCCCGAAGGA
Statistics
Matches: 100, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 100 1.00
ACGTcount: A:0.34, C:0.07, G:0.30, T:0.29
Consensus pattern (47 bp):
TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
Found at i:50242519 original size:46 final size:46
Alignment explanation
Indices: 50242466--50242641 Score: 185
Period size: 46 Copynumber: 3.8 Consensus size: 46
50242456 TATTTGGGCA
* * *
50242466 TCCGAACTCATTGATTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
*** * * *
50242512 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAAAGATGTA-AC-AAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGCGAA--CG
* * *
50242559 TCCGAGCTCGTTGAGTTCAGTCCGAGTTCACTTATGAATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* *
50242605 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
50242642 GTGGGTTACA
Statistics
Matches: 105, Mismatches: 20, Indels: 10
0.78 0.15 0.07
Matches are distributed among these distances:
45 2 0.02
46 68 0.65
47 33 0.31
48 2 0.02
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:50242621 original size:93 final size:93
Alignment explanation
Indices: 50242462--50242633 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
50242452 AGGATATTTG
* * * * *
50242462 GGCATCCGAACTCATTGATTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCATTGAGTTCAGTCCGAGTTCACTTATGAATGCGAACGCCCGAACTCGTTGAG
50242527 TTGAGTCCGAGTTCGAAAGATGTAACAA
66 TTGAGTCCGAGTTCGAAAGATGTAACAA
* * *
50242555 GGCATCCGAGCTCGTTGAGTTCAGTCCGAGTTCACTTATGAATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCATTGAGTTCAGTCCGAGTTCACTTATGAATGCGAACGCCCGAACTCGTTGAG
50242620 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
50242634 ACTTATGGGT
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCATTGAGTTCAGTCCGAGTTCACTTATGAATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAAAGATGTAACAA
Found at i:50244228 original size:39 final size:40
Alignment explanation
Indices: 50244183--50244350 Score: 106
Period size: 40 Copynumber: 4.2 Consensus size: 40
50244173 CGGGGTTTAG
* * *
50244183 CCGGATATAACCACTCGCA-CAAGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
*** * *
50244222 CCGGATATGGTCACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
** * * * **
50244262 CCGGATATAGTCGCTAGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGA-CTTAAC
* ** * * * *
50244302 CCGGATGTAGTCGCTTAGCACAAAAGCCTTCGGGACTTAGC
1 CCGGATATAACCAC-TAGCATAAAGGCCTTCGGGACTTAAC
50244343 CCGGATAT
1 CCGGATAT
50244351 CATTCGAGTA
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
39 18 0.17
40 61 0.56
41 27 0.25
42 3 0.03
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (40 bp):
CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
Found at i:50244333 original size:41 final size:40
Alignment explanation
Indices: 50244206--50244350 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
50244196 CTCGCACAAG
* * * * *
50244206 GCCTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
50244246 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* * *
50244286 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
50244327 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
50244351 CATTCGAGTA
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 3 0.03
40 59 0.64
41 27 0.29
42 3 0.03
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:50247651 original size:27 final size:27
Alignment explanation
Indices: 50247620--50247797 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
50247610 TAAATTGTAC
50247620 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
50247647 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
50247673 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
50247701 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
50247729 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
50247756 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
50247783 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
50247798 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:50247734 original size:82 final size:81
Alignment explanation
Indices: 50247621--50247776 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
50247611 AAATTGTACA
* *
50247621 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
50247685 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
50247702 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
50247767 TGCGAGTTGA
65 TGCGAATTGA
50247777 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:50247788 original size:82 final size:81
Alignment explanation
Indices: 50247617--50247797 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
50247607 GATTAAATTG
* *
50247617 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
50247682 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
50247698 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
50247762 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
50247780 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
50247798 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Done.