Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 156 of 349
Found at i:50255605 original size:41 final size:39
Alignment explanation
Indices: 50255471--50255614 Score: 171
Period size: 39 Copynumber: 3.6 Consensus size: 39
50255461 CTCGCACAAG
* * * * * *
50255471 GCCTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTC-GGACTTAGCCCGGATATAGTCGCTAGCACAAAA
*
50255511 GCCTTCGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGACTTAGCCCGGATATAGTCGCTAGCACAAAA
* *
50255550 GCCTTCGGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAAA
1 GCCTTCGGA-CTTAGCCCGGATATAGTCGC-TAGCAC-AAAA
50255592 GCCTTCGGACTTAGCCCGGATAT
1 GCCTTCGGACTTAGCCCGGATAT
50255615 CATTCGAGTA
Statistics
Matches: 91, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 37 0.41
40 24 0.26
41 18 0.20
42 12 0.13
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (39 bp):
GCCTTCGGACTTAGCCCGGATATAGTCGCTAGCACAAAA
Found at i:50258443 original size:46 final size:46
Alignment explanation
Indices: 50258359--50258779 Score: 485
Period size: 46 Copynumber: 9.2 Consensus size: 46
50258349 AATTCTAAAT
*
50258359 TGTGATAA-GCCTAATGGCCG-TGTGATGAT-T-AAAGTGTATATA
1 TGTGATAAGGCTTAATGGCCGATGTGATGATGTGAAAGTGTATATA
50258401 TGTGATAAGGCTTAATGGCCGATGTGATGATGTGAAAGTGTATATA
1 TGTGATAAGGCTTAATGGCCGATGTGATGATGTGAAAGTGTATATA
*
50258447 TGTAGATAGGGC-TAATGGCCGATGTGA-GATGTGAAAGTGTATATA
1 TGT-GATAAGGCTTAATGGCCGATGTGATGATGTGAAAGTGTATATA
50258492 TGTGATAAGGC-TAATGGCCGATGTGATGAATGTGAAAGTGTATATATA
1 TGTGATAAGGCTTAATGGCCGATGTGATG-ATGTGAAAGTG--TATATA
*
50258540 TGTGATAAGGCTTAATGGCCAATGTGATGAATGTGAAAGTGTATAT-
1 TGTGATAAGGCTTAATGGCCGATGTGATG-ATGTGAAAGTGTATATA
* * *
50258586 TGCGATAAGGC-T-ATAG-CGATGTGATGAAGTGAAAGTGTATATATA
1 TGTGATAAGGCTTAATGGCCGATGTGATGATGTGAAAGTG--TATATA
*
50258631 TGTGATAAGGCTTAATGGCCG-TGTTGATGAATCGTG-AAGTGTATATG
1 TGTGATAAGGCTTAATGGCCGATG-TGATG-AT-GTGAAAGTGTATATA
*
50258678 CGTGATAAGGCTTAATGGCCGATGT-ATGAAATGTGAAAGTGTATATA
1 TGTGATAAGGCTTAATGGCCGATGTGATG--ATGTGAAAGTGTATATA
* ** * * * *
50258725 TGTGA-CAGGCCGAGTGGCCAATGTGATGGATGTGAAAGTGCATAAA
1 TGTGATAAGGCTTAATGGCCGATGTGAT-GATGTGAAAGTGTATATA
50258771 TGTGATAAG
1 TGTGATAAG
50258780 TCCCGAAGGG
Statistics
Matches: 331, Mismatches: 23, Indels: 45
0.83 0.06 0.11
Matches are distributed among these distances:
42 18 0.05
43 20 0.06
44 39 0.12
45 34 0.10
46 92 0.28
47 64 0.19
48 27 0.08
49 34 0.10
50 3 0.01
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (46 bp):
TGTGATAAGGCTTAATGGCCGATGTGATGATGTGAAAGTGTATATA
Found at i:50258494 original size:91 final size:92
Alignment explanation
Indices: 50258359--50258779 Score: 494
Period size: 91 Copynumber: 4.6 Consensus size: 92
50258349 AATTCTAAAT
*
50258359 TGTGATAAGCCTAATGGCCG-TGTGATGAT-T-AAAGTGTATATATGTGATAAGGCTTAATGGCC
1 TGTGATAAGGCTAATGGCCGATGTGATGATGTGAAAGTGTATATATGTGATAAGGC-TAATGGCC
50258421 GATGTGATG-ATGTGAAAGTG-TATATA
65 GATGTGATGAATGTGAAAGTGATATATA
*
50258447 TGTAGATAGGGCTAATGGCCGATGTGA-GATGTGAAAGTGTATATATGTGATAAGGCTAATGGCC
1 TGT-GATAAGGCTAATGGCCGATGTGATGATGTGAAAGTGTATATATGTGATAAGGCTAATGGCC
50258511 GATGTGATGAATGTGAAAGTGTATATATA
65 GATGTGATGAATGTGAAAGTG-ATATATA
* * *
50258540 TGTGATAAGGCTTAATGGCCAATGTGATGAATGTGAAAGTGTATAT-TGCGATAAGGCT-ATAG-
1 TGTGATAAGGC-TAATGGCCGATGTGATG-ATGTGAAAGTGTATATATGTGATAAGGCTAATGGC
50258602 CGATGTGATGAA-GTGAAAGTGTATATATA
64 CGATGTGATGAATGTGAAAGTG-ATATATA
**
50258631 TGTGATAAGGCTTAATGGCCG-TGTTGATGAATCGTG-AAGTGTATATGCGTGATAAGGCTTAAT
1 TGTGATAAGGC-TAATGGCCGATG-TGATG-AT-GTGAAAGTGTATATATGTGATAAGGC-TAAT
50258694 GGCCGATGT-ATGAAATGTGAAAGTG-TATATA
61 GGCCGATGTGATG-AATGTGAAAGTGATATATA
* * * * * *
50258725 TGTGA-CAGGCCGAGTGGCCAATGTGATGGATGTGAAAGTGCATAAATGTGATAAG
1 TGTGATAAGG-CTAATGGCCGATGTGAT-GATGTGAAAGTGTATATATGTGATAAG
50258780 TCCCGAAGGG
Statistics
Matches: 293, Mismatches: 18, Indels: 39
0.84 0.05 0.11
Matches are distributed among these distances:
88 3 0.01
89 18 0.06
90 25 0.09
91 89 0.30
92 34 0.12
93 58 0.20
94 33 0.11
95 24 0.08
96 9 0.03
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (92 bp):
TGTGATAAGGCTAATGGCCGATGTGATGATGTGAAAGTGTATATATGTGATAAGGCTAATGGCCG
ATGTGATGAATGTGAAAGTGATATATA
Found at i:50258629 original size:139 final size:137
Alignment explanation
Indices: 50258359--50258727 Score: 506
Period size: 139 Copynumber: 2.7 Consensus size: 137
50258349 AATTCTAAAT
*
50258359 TGTGATAAGCCTAATGGCCGTGTGATG-AT-T-AAAGTGTATATATGTGATAAGGCTTAATGGCC
1 TGTGATAAGGCTAATGGCCGTGTGATGAATGTGAAAGTGTATATATGTGATAAGGCTTAATGGCC
* * *
50258421 GATGTGATG-ATGTGAAAGTGTATATATGTAGATAGGGCTAATGGCCGATGTGAGATGTGAAAGT
66 GATGTGATGAATGTGAAAGTGTATATATGTAGATAAGGCTAATAGCCGATGTGAGAAGTGAAAGT
50258485 GTATATA
131 GTATATA
50258492 TGTGATAAGGCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCTTAATG
1 TGTGATAAGGCTAATGGCCG-TGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCTTAATG
* *
50258557 GCCAATGTGATGAATGTGAAAGTGTATAT-TG-CGATAAGGCT-ATAG-CGATGTGATGAAGTGA
63 GCCGATGTGATGAATGTGAAAGTGTATATATGTAGATAAGGCTAATAGCCGATGTGA-GAAGTGA
50258618 AAGTGTATATATA
127 AAGTG--TATATA
**
50258631 TGTGATAAGGCTTAATGGCCGTGTTGATGAATCGTG-AAGTGTATATGCGTGATAAGGCTTAATG
1 TGTGATAAGGC-TAATGGCCGTG-TGATGAAT-GTGAAAGTGTATATATGTGATAAGGCTTAATG
50258695 GCCGATGT-ATGAAATGTGAAAGTGTATATATGT
63 GCCGATGTGATG-AATGTGAAAGTGTATATATGT
50258728 GACAGGCCGA
Statistics
Matches: 211, Mismatches: 9, Indels: 25
0.86 0.04 0.10
Matches are distributed among these distances:
133 19 0.09
134 7 0.03
135 2 0.01
136 9 0.04
137 23 0.11
138 53 0.25
139 57 0.27
140 38 0.18
141 3 0.01
ACGTcount: A:0.31, C:0.07, G:0.30, T:0.32
Consensus pattern (137 bp):
TGTGATAAGGCTAATGGCCGTGTGATGAATGTGAAAGTGTATATATGTGATAAGGCTTAATGGCC
GATGTGATGAATGTGAAAGTGTATATATGTAGATAAGGCTAATAGCCGATGTGAGAAGTGAAAGT
GTATATA
Found at i:50260382 original size:36 final size:36
Alignment explanation
Indices: 50260323--50260399 Score: 111
Period size: 36 Copynumber: 2.1 Consensus size: 36
50260313 TCTATTACAA
* *
50260323 GTCTTACCCGACATAATCTCCCACACGAAGTTATCG
1 GTCTTACCCGACAAAATCTCCCACACGAAGTCATCG
*
50260359 GTCTTACCCGGACAAAATC-CCCACACGTAGTCATCG
1 GTCTTACCC-GACAAAATCTCCCACACGAAGTCATCG
50260395 GTCTT
1 GTCTT
50260400 TAGAGCTCGA
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
36 29 0.78
37 8 0.22
ACGTcount: A:0.26, C:0.34, G:0.16, T:0.25
Consensus pattern (36 bp):
GTCTTACCCGACAAAATCTCCCACACGAAGTCATCG
Found at i:50260590 original size:47 final size:47
Alignment explanation
Indices: 50260512--50260939 Score: 543
Period size: 47 Copynumber: 9.2 Consensus size: 47
50260502 CCCTTCGGGA
* * * * * **
50260512 CTTATCACATTTATGCACTTTCACATCCATCACATTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
* *
50260559 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
**
50260606 CTTATCACGCATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
* *
50260653 CTTATCACATAT-TAACACTTTCACATTCATC-CATCGGCTATTAGGC
1 CTTATCACATATAT-ACACTTTCACATTCATCACATCGGCCATTAAGC
* * *
50260699 CTTATCGCACATATACACTTTCACATTCATCA-ATTGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
*
50260745 CTTATCACATATATATATCAC-TTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATA-CACTTTCACATTCATCACATCGGCCATTAAGC
* *
50260794 CTTATCACATA-ATACACTTTCACATTCATCACAT-GGCCACTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
*
50260839 CCTATTCACATATATACACTTTCACATTCATCACATCGG-C-TTAAGC
1 CTTA-TCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
*
50260885 CTTATCACATATATACACTTTCACTATTCATCACATC-GCAATT-AGC
1 CTTATCACATATATACACTTTCAC-ATTCATCACATCGGCCATTAAGC
50260931 CTTATCACA
1 CTTATCACA
50260940 ATTTAGAATC
Statistics
Matches: 335, Mismatches: 32, Indels: 29
0.85 0.08 0.07
Matches are distributed among these distances:
45 37 0.11
46 116 0.35
47 138 0.41
48 21 0.06
49 23 0.07
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
Found at i:50268985 original size:49 final size:48
Alignment explanation
Indices: 50268908--50269065 Score: 273
Period size: 49 Copynumber: 3.2 Consensus size: 48
50268898 GCCCTTCGGG
50268908 ACTTATCACATTCATCACATCGGCCATTAGGCCCTATCACATATATACAC
1 ACTT-TCACATTCATCACATCGGCCATTAGGCCCTATCACATATATA-AC
50268958 ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATA-AC
*
50269007 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT-AC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATAAC
50269054 ACTTTCACATTC
1 ACTTTCACATTC
50269066 TCAAAGTAAG
Statistics
Matches: 106, Mismatches: 2, Indels: 3
0.95 0.02 0.03
Matches are distributed among these distances:
47 14 0.13
49 88 0.83
50 4 0.04
ACGTcount: A:0.30, C:0.31, G:0.08, T:0.31
Consensus pattern (48 bp):
ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATAAC
Found at i:50269383 original size:24 final size:23
Alignment explanation
Indices: 50269335--50269392 Score: 66
Period size: 24 Copynumber: 2.5 Consensus size: 23
50269325 TAATCAAACA
50269335 TTATTATATATATATCATATCATT
1 TTATTAT-TATATATCATATCATT
*
50269359 TTATTATTAT-TATCATTATTTATT
1 TTATTATTATATATCA-TA-TCATT
50269383 TTATT-TTATA
1 TTATTATTATA
50269393 CTTTCAACTC
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
22 5 0.17
23 9 0.30
24 16 0.53
ACGTcount: A:0.33, C:0.05, G:0.00, T:0.62
Consensus pattern (23 bp):
TTATTATTATATATCATATCATT
Found at i:50271732 original size:36 final size:37
Alignment explanation
Indices: 50271672--50271749 Score: 113
Period size: 36 Copynumber: 2.1 Consensus size: 37
50271662 TTATTACGAA
* * *
50271672 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
50271709 GTCTTA-CCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
50271745 GTCTT
1 GTCTT
50271750 TAGAGCTCGA
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
36 31 0.84
37 6 0.16
ACGTcount: A:0.26, C:0.31, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:50271944 original size:47 final size:47
Alignment explanation
Indices: 50271866--50272302 Score: 640
Period size: 47 Copynumber: 9.2 Consensus size: 47
50271856 GCCCTTCGGA
* * * * * **
50271866 CTTATCACATTTATGCACTTTCACATCCATCACATTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
* * *
50271913 CCTGTCACATATATACACTTTCACATTCATCACATCGGTCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
**
50271960 CTTATCACGCATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
* *
50272007 CTTATCACATATATATCCACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATA--CACTTTCACATTCATCACATCGGCCATTAAGC
* *
50272056 CTTATCGCACATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
*
50272103 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAAGC
*
50272152 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
*
50272199 CCTATTCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTA-TCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
* *
50272247 CTTATCACATATATACATTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
50272294 CTTATCACA
1 CTTATCACA
50272303 ATTTAGAATT
Statistics
Matches: 354, Mismatches: 31, Indels: 10
0.90 0.08 0.03
Matches are distributed among these distances:
47 221 0.62
48 45 0.13
49 88 0.25
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
Found at i:50272061 original size:96 final size:94
Alignment explanation
Indices: 50271866--50272302 Score: 640
Period size: 96 Copynumber: 4.6 Consensus size: 94
50271856 GCCCTTCGGA
** * * * * * * *
50271866 CTTATCACATTTATGCACTTTCACATCCATCACATTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
50271931 TTTCACATTCATCACATCGGTCATTAAGC
66 TTTCACATTCATCACATCGGCCATTAAGC
* *
50271960 CTTATCACGCATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATATCC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA--C
* *
50272025 ACTTTCACATTCATCACATCGGCTATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAAGC
* *
50272056 CTTATCGCACATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATATAC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
*
50272121 ACTTTCACATTCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAAGC
* *
50272152 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATTCACATATATACA
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA-TCACATATATACA
50272217 CTTTCACATTCATCACATCGGCCATTAAGC
65 CTTTCACATTCATCACATCGGCCATTAAGC
* *
50272247 CTTATCACATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA
50272303 ATTTAGAATT
Statistics
Matches: 314, Mismatches: 24, Indels: 10
0.90 0.07 0.03
Matches are distributed among these distances:
94 56 0.18
95 87 0.28
96 160 0.51
97 4 0.01
98 7 0.02
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.32
Consensus pattern (94 bp):
CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAAGC
Found at i:50272082 original size:143 final size:142
Alignment explanation
Indices: 50271866--50272302 Score: 682
Period size: 143 Copynumber: 3.1 Consensus size: 142
50271856 GCCCTTCGGA
* * * * *
50271866 CTTATCACAT-T-TATGCACTTTCACATCCATCACATTGGCCACTCGGCCCTGTCACATATATAC
1 CTTATCACATATATAT-CACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATAC
* **
50271929 ACTTTCACATTCATCACATCGGTCATTAAGCCTTATCACGCATATACACTTTCACATTCATCACA
65 ACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATACACTTTCACATTCATCACA
*
50271994 TCGGCCATTAAGC
130 TCGGCCATTAGGC
* * * *
50272007 CTTATCACATATATATCCACTTTCACATTCATCACATCGGCTATTAGGCCTTATCGCACATATAC
1 CTTATCACATATATAT-CACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATAC
50272072 ACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATATACACTTTCACATTCATCA
65 ACTTTCACATTCATCACATCGGCCATTAAGCCTTATCAC--ATATATACACTTTCACATTCATCA
50272137 CATCGGCCATTAGGC
128 CATCGGCCATTAGGC
50272152 CTTATCACATATATA-CACTTTCACATTCATCACATCGGCCATTAGGCCCTATTCACATATATAC
1 CTTATCACATATATATCACTTTCACATTCATCACATCGGCCATTAGGCCCTA-TCACATATATAC
*
50272216 ACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATACATTTTCACATTCATCACA
65 ACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATACACTTTCACATTCATCACA
50272281 TCGGCCATTAGGC
130 TCGGCCATTAGGC
50272294 CTTATCACA
1 CTTATCACA
50272303 ATTTAGAATT
Statistics
Matches: 272, Mismatches: 19, Indels: 9
0.91 0.06 0.03
Matches are distributed among these distances:
141 10 0.04
142 48 0.18
143 114 0.42
144 49 0.18
145 51 0.19
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.32
Consensus pattern (142 bp):
CTTATCACATATATATCACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATACA
CTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATACACTTTCACATTCATCACAT
CGGCCATTAGGC
Found at i:50276823 original size:48 final size:49
Alignment explanation
Indices: 50276719--50276865 Score: 260
Period size: 48 Copynumber: 3.0 Consensus size: 49
50276709 AGAATGTGAA
*
50276719 GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
1 GTGTATATATGTGATAGGGCCTAATGGCCGATGTGATGAATGTGAAAGT
*
50276768 GTATATATATGTGATAGGGCCTAATGGCCGA-GTGATGAATGTGAAAGT
1 GTGTATATATGTGATAGGGCCTAATGGCCGATGTGATGAATGTGAAAGT
50276816 GTGTATATATGTGATAGGGCCTAATGGCCGATGTGATGAATGTGATAAGT
1 GTGTATATATGTGATAGGGCCTAATGGCCGATGTGATGAATGTGA-AAGT
50276866 CCCGAAGGGC
Statistics
Matches: 93, Mismatches: 3, Indels: 3
0.94 0.03 0.03
Matches are distributed among these distances:
48 47 0.51
49 42 0.45
50 4 0.04
ACGTcount: A:0.30, C:0.08, G:0.31, T:0.31
Consensus pattern (49 bp):
GTGTATATATGTGATAGGGCCTAATGGCCGATGTGATGAATGTGAAAGT
Found at i:50277039 original size:37 final size:37
Alignment explanation
Indices: 50276983--50277061 Score: 104
Period size: 37 Copynumber: 2.1 Consensus size: 37
50276973 CCGAGCTCTA
* * * *
50276983 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGTGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
* *
50277020 AAGACCCGTTAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
50277057 AAGAC
1 AAGAC
50277062 TTCGTAATAA
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.23, C:0.19, G:0.30, T:0.28
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:50278789 original size:50 final size:49
Alignment explanation
Indices: 50278674--50278831 Score: 259
Period size: 50 Copynumber: 3.2 Consensus size: 49
50278664 GCCCTTCGGG
*
50278674 ACTTATCACATTCATCACATCGGCCATTAGGCCCTATCACATATATACAC
1 ACTT-TCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
50278724 ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACAATATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCAC-ATATATATAC
*
50278774 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATAT-C
1 ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
50278820 ACTTTCACATTC
1 ACTTTCACATTC
50278832 TCAAAGTAAG
Statistics
Matches: 105, Mismatches: 2, Indels: 6
0.93 0.02 0.05
Matches are distributed among these distances:
46 13 0.12
47 6 0.06
49 35 0.33
50 51 0.49
ACGTcount: A:0.30, C:0.31, G:0.08, T:0.31
Consensus pattern (49 bp):
ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
Found at i:50281476 original size:37 final size:37
Alignment explanation
Indices: 50281426--50281504 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
50281416 TTATTACGAA
* * *
50281426 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
50281463 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
50281500 GTCTT
1 GTCTT
50281505 TAAAGCTCGA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:50281700 original size:47 final size:47
Alignment explanation
Indices: 50281622--50282057 Score: 583
Period size: 47 Copynumber: 9.2 Consensus size: 47
50281612 CCCTTCGGGA
* * * * * **
50281622 CTTATCACATTTATGCACTTTCACATCCATCACATTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
* * *
50281669 CCTGTCACATATATACACTTTCACATTCATCACATCGGTCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
**
50281716 CTTATCACGCATATACACTTTCACATTCATCA-ATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
* *
50281762 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAAGC
* *
50281811 CTTATCGCACATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
*
50281858 CTTATCACATATATATACACTTTCACATTCATACACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCAT-CACATCGGCCATTAAGC
*
50281908 CTTA-CACAATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC-ATATATACACTTTCACATTCATCACATCGGCCATTAAGC
50281955 C-TATTCACAATATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTA-TCAC-ATATATACACTTTCACATTCATCACATCGGCCATTAAGC
* * *
50282003 CTTATCAAATATATACATTTTCACATTCATCACATCGG-CATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
50282049 CTTATCACA
1 CTTATCACA
50282058 ATTTAGAATT
Statistics
Matches: 348, Mismatches: 32, Indels: 19
0.87 0.08 0.05
Matches are distributed among these distances:
46 38 0.11
47 155 0.45
48 90 0.26
49 45 0.13
50 20 0.06
ACGTcount: A:0.31, C:0.29, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
Found at i:50281795 original size:95 final size:96
Alignment explanation
Indices: 50281622--50282057 Score: 598
Period size: 95 Copynumber: 4.6 Consensus size: 96
50281612 CCCTTCGGGA
** * * * * ** * *
50281622 CTTATCACATTTATGCACTTTCACATCCATCACATTGGCCACTCGGCCCTGTCAC--ATATATAC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATATAC
*
50281685 ACTTTCACATTCATCACATCGGTCATTAAGC
66 ACTTTCACATTCATCACATCGGCCATTAAGC
*
50281716 CTTATCACGCATATACACTTTCACATTCATCA-ATCGGCCATTAAGCCTTATCACATATATATAC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATATAC
* *
50281780 ACTTTCACATTCATCACATCGGCTATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAAGC
*
50281811 CTTATCGCACATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATATAC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATATAC
*
50281876 ACTTTCACATTCATACACATCGGCCATTAGGC
66 ACTTTCACATTCAT-CACATCGGCCATTAAGC
* *
50281908 CTTA-CACAATATATACACTTTCACATTCATCACATCGGCCATTAGGCC-TATTCACA-ATATAT
1 CTTATCAC-ACATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTA-TCACATATATAT
50281970 ACACTTTCACATTCATCACATCGGCCATTAAGC
64 ACACTTTCACATTCATCACATCGGCCATTAAGC
* * * *
50282003 CTTATCAAATATATACATTTTCACATTCATCACATCGG-CATTAGGCCTTATCACA
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACA
50282058 ATTTAGAATT
Statistics
Matches: 311, Mismatches: 23, Indels: 16
0.89 0.07 0.05
Matches are distributed among these distances:
93 16 0.05
94 41 0.13
95 117 0.38
96 74 0.24
97 63 0.20
ACGTcount: A:0.31, C:0.29, G:0.08, T:0.32
Consensus pattern (96 bp):
CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATATAC
ACTTTCACATTCATCACATCGGCCATTAAGC
Found at i:50281970 original size:192 final size:190
Alignment explanation
Indices: 50281637--50282059 Score: 604
Period size: 192 Copynumber: 2.2 Consensus size: 190
50281627 CACATTTATG
* * * * * *
50281637 CACTTTCACATCCATCACATTGGCCACTCGGCCCTGTCAC-ATATATACACTTTCACATTCATCA
1 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATACACTTTCACATTCATCA
* *
50281701 CATCGGTCATTAAGCCTTATCACGCATATACACTTTCACATTCATCAATCGGCCATTAAGCCTTA
66 CATCGGCCATTAAGCCTTATCACACATATACACTTTCACATTCATCAATCGGCCATTAAGCCTTA
* * **
50281766 TCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCGCACATATA
131 TCACATATATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTATCAAACATATA
*
50281826 CACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATATACACTTTCACATTCATA
1 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA-ATATATACACTTTCACATTCAT-
* * *
50281891 CACATCGGCCATTAGGCCTTA-CACAATATATACACTTTCACATTCATCACATCGGCCATTAGGC
64 CACATCGGCCATTAAGCCTTATCAC-ACATATACACTTTCACATTCATCA-ATCGGCCATTAAGC
*
50281955 C-TATTCACA-ATATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTATCAAATATATA
127 CTTA-TCACATATATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTATCAAACATATA
*
50282018 CATTTTCACATTCATCACATCGG-CATTAGGCCTTATCACAAT
1 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAAT
50282060 TTAGAATTCA
Statistics
Matches: 209, Mismatches: 19, Indels: 11
0.87 0.08 0.05
Matches are distributed among these distances:
189 33 0.16
190 2 0.01
191 41 0.20
192 114 0.55
193 19 0.09
ACGTcount: A:0.31, C:0.30, G:0.08, T:0.31
Consensus pattern (190 bp):
CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATACACTTTCACATTCATCA
CATCGGCCATTAAGCCTTATCACACATATACACTTTCACATTCATCAATCGGCCATTAAGCCTTA
TCACATATATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTATCAAACATATA
Found at i:50288546 original size:48 final size:48
Alignment explanation
Indices: 50288443--50288599 Score: 264
Period size: 48 Copynumber: 3.2 Consensus size: 48
50288433 GCCCTTCGGG
*
50288443 ACTTATCACATTCATCACATCGGCCATTAGGCCCTATCACATATATACAC
1 ACTT-TCACATTCATCACATCGGCCATTAGG-CCTATCACATATATATAC
50288493 ACTTTCACATTCATCACATCGGCCATTAGGCCTATCACATATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTATCACATATATATAC
50288541 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCC-TATCACATATATATAC
50288588 ACTTTCACATTC
1 ACTTTCACATTC
50288600 TCAAAGTAAG
Statistics
Matches: 105, Mismatches: 1, Indels: 5
0.95 0.01 0.05
Matches are distributed among these distances:
47 20 0.19
48 49 0.47
49 32 0.30
50 4 0.04
ACGTcount: A:0.31, C:0.31, G:0.08, T:0.31
Consensus pattern (48 bp):
ACTTTCACATTCATCACATCGGCCATTAGGCCTATCACATATATATAC
Found at i:50291254 original size:36 final size:37
Alignment explanation
Indices: 50291207--50291284 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
50291197 TTATTACGAA
* * *
50291207 GTCTTACCCGGAC-TAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
50291243 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
50291280 GTCTT
1 GTCTT
50291285 TAGAGCTCGA
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
36 13 0.35
37 24 0.65
ACGTcount: A:0.24, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:50291510 original size:47 final size:47
Alignment explanation
Indices: 50291449--50291830 Score: 503
Period size: 47 Copynumber: 8.1 Consensus size: 47
50291439 CTCGGCCCTG
*
50291449 TCACATATA-ACACTTTCACATTCATCACATCGGTCATTAAGCCTTA
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTA
**
50291495 TCACGCATATACACTTTCACATTCAT-ACCATCGGCCATTAAGCC-TA
1 TCACATATATACACTTTCACATTCATCA-CATCGGCCATTAAGCCTTA
* *
50291541 TCACATATATATAACACTTTCACATTCATCACATCGGCTATTAGGCCTTA
1 TCAC--ATATAT-ACACTTTCACATTCATCACATCGGCCATTAAGCCTTA
* *
50291591 TCGCACATATAC-CTTTCACATTCATCACATCGGCCATTAAGCCTTA
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTA
*
50291637 TCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 TCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTA
* * *
50291686 TCACATATATACAC-TTCACA-TCTATCA-A-C-TCCATTAGGCCCTA
1 TCACATATATACACTTTCACATTC-ATCACATCGGCCATTAAGCCTTA
50291729 TTCACATATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTA
1 -TCACATATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTA
* *
50291777 TCACATATATACATTTTCACATTCATCACATCGGCCATTAGTGCCTTA
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTA-AGCCTTA
50291825 TCACAT
1 TCACAT
50291831 TTAGAATTCA
Statistics
Matches: 297, Mismatches: 21, Indels: 34
0.84 0.06 0.10
Matches are distributed among these distances:
43 12 0.04
44 15 0.05
45 13 0.04
46 62 0.21
47 83 0.28
48 39 0.13
49 67 0.23
50 6 0.02
ACGTcount: A:0.31, C:0.30, G:0.07, T:0.32
Consensus pattern (47 bp):
TCACATATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTA
Found at i:50291671 original size:95 final size:96
Alignment explanation
Indices: 50291453--50291830 Score: 517
Period size: 95 Copynumber: 4.0 Consensus size: 96
50291443 GCCCTGTCAC
* *
50291453 ATATA-ACACTTTCACATTCATCACATCGGTCATTAAGCCTTATCACGCATATACACTTTCACAT
1 ATATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACACATATACACTTTCACAT
50291517 TCAT-ACCATCGGCCATTAAGCC-TATCACAT
66 TCATCA-CATCGGCCATTAAGCCTTATCACAT
* * *
50291547 ATATATAACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCGCACATATAC-CTTTCACA
1 ATATAT-ACACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACACATATACACTTTCACA
50291611 TTCATCACATCGGCCATTAAGCCTTATCACAT
65 TTCATCACATCGGCCATTAAGCCTTATCACAT
* *
50291643 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC-TTCACA-
1 ATATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACACATATACACTTTCACAT
* * *
50291706 TCTATCA-A-C-TCCATTAGGCCCTATTCAC--
66 TC-ATCACATCGGCCATTAAGCCTTA-TCACAT
* *
50291734 ATATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATACATTTTCACAT
1 ATATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACACATATACACTTTCACAT
*
50291799 TCATCACATCGGCCATTAGTGCCTTATCACAT
66 TCATCACATCGGCCATTA-AGCCTTATCACAT
50291831 TTAGAATTCA
Statistics
Matches: 253, Mismatches: 16, Indels: 27
0.85 0.05 0.09
Matches are distributed among these distances:
91 55 0.22
92 21 0.08
93 8 0.03
94 9 0.04
95 95 0.38
96 65 0.26
ACGTcount: A:0.31, C:0.29, G:0.07, T:0.32
Consensus pattern (96 bp):
ATATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACACATATACACTTTCACAT
TCATCACATCGGCCATTAAGCCTTATCACAT
Found at i:50298970 original size:40 final size:40
Alignment explanation
Indices: 50298926--50299041 Score: 133
Period size: 40 Copynumber: 2.9 Consensus size: 40
50298916 GAATACATGT
* * *
50298926 CACCAGCATGATTGCTCTTCGGGACCTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGAACCTAGCCCGGATATAA
* * ***
50298966 CACCAGCACGAATGCTCTTCGGAACTTAGTCCGGATACCT
1 CACCAGCACGAATGCTCTTCGGAACCTAGCCCGGATATAA
* **
50299006 CACTAGCACGAATGCTCTTCGGAATTTAGCCCGGAT
1 CACCAGCACGAATGCTCTTCGGAACCTAGCCCGGAT
50299042 TTAGTAACTC
Statistics
Matches: 65, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 65 1.00
ACGTcount: A:0.25, C:0.30, G:0.22, T:0.23
Consensus pattern (40 bp):
CACCAGCACGAATGCTCTTCGGAACCTAGCCCGGATATAA
Found at i:50299066 original size:40 final size:40
Alignment explanation
Indices: 50298942--50299203 Score: 216
Period size: 40 Copynumber: 6.5 Consensus size: 40
50298932 CATGATTGCT
* * * *
50298942 CTTCGGGACCTAGCCCGGATATAAC-AC-CAGCACGAATGC
1 CTTCGGGTCTTAGCCCGGATATATCAACTC-GCACCAATGC
** * ** * *
50298981 TCTTCGGAACTTAGTCCGGATACCTC-ACTAGCACGAATGC
1 -CTTCGGGTCTTAGCCCGGATATATCAACTCGCACCAATGC
* *
50299021 TCTTCGGAAT-TTAGCCCGGATTTAGT-AACTCGCACCAATGC
1 -CTTCGG-GTCTTAGCCCGGATATA-TCAACTCGCACCAATGC
* *
50299062 CTTCGGGTCTTAGCCCGAATATATCAACTTGCA-CAATTGC
1 CTTCGGGTCTTAGCCCGGATATATCAACTCGCACCAA-TGC
* *
50299102 CTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATATCAACTCGCACCAATGC
* *
50299142 CTTCGGGTCTTAGCCCGGATATAATC-ACTAGC-TCAATTGC
1 CTTCGGGTCTTAGCCCGGATAT-ATCAACTCGCACCAA-TGC
*
50299182 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGTCTTAGCCCGGATAT
50299204 CATTCAAATG
Statistics
Matches: 185, Mismatches: 27, Indels: 20
0.80 0.12 0.09
Matches are distributed among these distances:
39 7 0.04
40 159 0.86
41 19 0.10
ACGTcount: A:0.24, C:0.29, G:0.21, T:0.26
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATATCAACTCGCACCAATGC
Found at i:50299074 original size:80 final size:78
Alignment explanation
Indices: 50298952--50299203 Score: 242
Period size: 80 Copynumber: 3.2 Consensus size: 78
50298942 CTTCGGGACC
* * ** * **
50298952 TAGCCCGGATATAAC-AC-CAGCACGAATGCTCTTCGGAACTTAGTCCGGATACCTCACTAGCAC
1 TAGCCCGGATATATCAACTC-GCACAAATGC-CTTCGGGTCTTAGCCCGGATAAATCACTAGCAC
50299015 GAA-TGCTCTTCGGAATT
64 -AATTGC-CTTCGG-ATT
* * * * *
50299032 TAGCCCGGATTTAGT-AACTCGCACCAATGCCTTCGGGTCTTAGCCCGAATATATCAACTTGCAC
1 TAGCCCGGATATA-TCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATAAATC-ACTAGCAC
*
50299096 AATTGCCTTCGGGTCT
64 AATTGCCTTCGGAT-T
* *
50299112 TAGCCCGGATATATCAATTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAATCACTAGCTCA
1 TAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATA-AATCACTAGCACA
*
50299177 ATTGCCTTCGGGACT
65 ATTGCCTTC-GGATT
50299192 TAGCCCGGATAT
1 TAGCCCGGATAT
50299204 CATTCAAATG
Statistics
Matches: 143, Mismatches: 20, Indels: 18
0.79 0.11 0.10
Matches are distributed among these distances:
79 2 0.01
80 114 0.80
81 26 0.18
82 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.27
Consensus pattern (78 bp):
TAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATAAATCACTAGCACAA
TTGCCTTCGGATT
Found at i:50299531 original size:29 final size:29
Alignment explanation
Indices: 50299492--50299570 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
50299482 CTTAATAATC
*
50299492 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
50299522 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
50299551 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
50299571 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:50299613 original size:43 final size:43
Alignment explanation
Indices: 50299552--50299696 Score: 265
Period size: 43 Copynumber: 3.4 Consensus size: 43
50299542 TGCATTTCAA
*
50299552 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAATACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
*
50299595 GCCCGCACACTTAGTGCCAATCTCGCAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
50299638 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
50299681 GCCCGCA-ACTTAGTGC
1 GCCCGCACACTTAGTGC
50299697 TGAAAACCAA
Statistics
Matches: 99, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
42 9 0.09
43 90 0.91
ACGTcount: A:0.26, C:0.34, G:0.16, T:0.23
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
Found at i:50307643 original size:99 final size:100
Alignment explanation
Indices: 50307475--50307713 Score: 320
Period size: 99 Copynumber: 2.4 Consensus size: 100
50307465 CAGTTTTAGG
* ** *
50307475 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCATACCCGATAGTTTCGATCAAGTGTGTAGTA
1 TCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTA-CCGATAGCTTCGATCAAGTGTGTAGTA
* * * **
50307540 CTAAGTGCAGGCTACTACGTGTACCGGATTGATAGG
65 CTAAGTGCAAGCTACTACGTGTACCAGATGGATAAA
** *
50307576 TTGCATGTGTAGTACTAAGTGCA-GCTACTATGTGTACCGTTTA-CTTCGATCAAGTGTGTAGTA
1 TCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCG-ATAGCTTCGATCAAGTGTGTAGTA
*
50307639 CTAAGTGCAAGCTACTACGTGTATCAGATGGATAAA
65 CTAAGTGCAAGCTACTACGTGTACCAGATGGATAAA
*
50307675 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACC
1 TCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACC
50307714 AAATTGATAG
Statistics
Matches: 120, Mismatches: 16, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
99 73 0.61
100 27 0.22
101 20 0.17
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (100 bp):
TCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGATAGCTTCGATCAAGTGTGTAGTAC
TAAGTGCAAGCTACTACGTGTACCAGATGGATAAA
Found at i:50307684 original size:50 final size:50
Alignment explanation
Indices: 50307475--50307752 Score: 278
Period size: 50 Copynumber: 5.6 Consensus size: 50
50307465 CAGTTTTAGG
* * ** * * * *
50307475 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCATACCCGATAGTTTCGA
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG-ATAGA
* *
50307526 TCA-AGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATTGATAGG
1 TCACA-TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGA
** * * *
50307576 TTGCATGTGTAGTACTAAGTGCA-GCTACTATGTGTACC-G-TTTACTTCGA
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGA--TAGA
* * * *
50307625 TCA-AGTGTGTAGTACTAAGTGCAAGCTACTACGTGTATCAGATGGATAAA
1 TCACA-TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGA
* *
50307675 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATTGATAGG
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGA
*
50307725 TCGCATGTGTAGTACTAAGTGCAGGCTA
1 TCACATGTGTAGTACTAAGTGCAGGCTA
50307753 TTATGGGTAC
Statistics
Matches: 188, Mismatches: 30, Indels: 19
0.79 0.13 0.08
Matches are distributed among these distances:
47 3 0.02
48 2 0.01
49 35 0.19
50 105 0.56
51 41 0.22
52 2 0.01
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (50 bp):
TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGA
Found at i:50316770 original size:219 final size:219
Alignment explanation
Indices: 50316390--50316826 Score: 660
Period size: 219 Copynumber: 2.0 Consensus size: 219
50316380 CCAAAACATG
* **
50316390 TTTTGGGAGTAGTCCAGGACAAAACCGAGAACTTCAAAAATTTTCTTGAAACTTAGAAAATTTTT
1 TTTTGGGAGTAGTCCAAGACAAAACCGAGAACTTCAAAAATTTTCACGAAACTTAGAAAATTTTT
* * * * * *
50316455 CCACTAGATAAAGGTCATATGTCTGCGTGGATATGGGACATGCCCGGGTGGGCAGGCCGTGTGGT
66 CCACTAAACAAAGGTCACATGTCTGCGTGGATATGGGACATACCCGGATGGGCAGGCCGTATGGT
* *
50316520 TACACACGCCCTTGTCCTGACCCCGTGTAACTCTCTGACTTGTAACCCATGAACAAATTGAGGTC
131 CACACACGCCCTTGTCCTGACCCCATGTAACTCTCTGACTTGTAACCCATGAACAAATTGAGGTC
*
50316585 GCACGGCCAAATCACACGCCCGTA
196 ACACGGCCAAATCACACGCCCGTA
* * * *
50316609 TTTTGGGAGTAGTCCAAGACTAAACCGAGAACTTCAGAAATTTTCACGACACTTAGAAAGTTTTT
1 TTTTGGGAGTAGTCCAAGACAAAACCGAGAACTTCAAAAATTTTCACGAAACTTAGAAAATTTTT
* * *
50316674 CCACTAAACAAAGGTCACATGT-TCGTGTGGATATGGGACATACCTGTATGGGCAGGCCGTATGG
66 CCACTAAACAAAGGTCACATGTCT-GCGTGGATATGGGACATACCCGGATGGGCAGGCCGTATGG
*
50316738 TCACACACGCCCTTGTCCTGACCCCATGTAACTCTCTGTCTTGTAACCCATGAACAAATTGAGGT
130 TCACACACGCCCTTGTCCTGACCCCATGTAACTCTCTGACTTGTAACCCATGAACAAATTGAGGT
* *
50316803 CACACGGCCAAATTACACTCCCGT
195 CACACGGCCAAATCACACGCCCGT
50316827 GTGCTAGGCT
Statistics
Matches: 195, Mismatches: 22, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
218 1 0.01
219 194 0.99
ACGTcount: A:0.28, C:0.25, G:0.22, T:0.26
Consensus pattern (219 bp):
TTTTGGGAGTAGTCCAAGACAAAACCGAGAACTTCAAAAATTTTCACGAAACTTAGAAAATTTTT
CCACTAAACAAAGGTCACATGTCTGCGTGGATATGGGACATACCCGGATGGGCAGGCCGTATGGT
CACACACGCCCTTGTCCTGACCCCATGTAACTCTCTGACTTGTAACCCATGAACAAATTGAGGTC
ACACGGCCAAATCACACGCCCGTA
Found at i:50318848 original size:28 final size:28
Alignment explanation
Indices: 50318785--50318935 Score: 214
Period size: 28 Copynumber: 5.4 Consensus size: 28
50318775 ATATTAAGTC
*
50318785 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
50318812 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
50318840 CGCACACTTAGTGCTACATAATCAAGCT
1 CGCACACTTAGTGCTATATAATCAAACT
*
50318868 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
50318896 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
50318925 CGCACACTTAG
1 CGCACACTTAG
50318936 CGCCAATCTC
Statistics
Matches: 113, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
27 22 0.19
28 75 0.66
29 16 0.14
ACGTcount: A:0.33, C:0.28, G:0.13, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:50323439 original size:48 final size:48
Alignment explanation
Indices: 50323368--50323639 Score: 250
Period size: 48 Copynumber: 5.7 Consensus size: 48
50323358 TATGGGTGCG
* *
50323368 AGTGTAAGACTATGTCTGGGACATGGCATCGGCCACATTATTAGAGCC
1 AGTGTAAGACCATGTTTGGGACATGGCATCGGCCACATTATTAGAGCC
* *** * *
50323416 AGTGTAAGACTATGTTTGGGACATGGCATCAGTG-TTGA-TATGT-GTGCT
1 AGTGTAAGACCATGTTTGGGACATGGCATC-G-GCCACATTAT-TAGAGCC
* * *
50323464 AGTGTAAAACCATGTTTGGGACATGGCGTCGGCCACATTATGAGAGCC
1 AGTGTAAGACCATGTTTGGGACATGGCATCGGCCACATTATTAGAGCC
* * * * **** * *
50323512 AGTATAAGACCATGTCTAGGACATAGCATCGGTGTTGA-TATGT-GTGCT
1 AGTGTAAGACCATGTTTGGGACATGGCATCGG-CCACATTAT-TAGAGCC
* *
50323560 AGTGTAAGACCATG-TCGGGACATGGCATCGGCCACATTATGAGAGCC
1 AGTGTAAGACCATGTTTGGGACATGGCATCGGCCACATTATTAGAGCC
50323607 AGTGTAAGACCATGTTTGGGACATGGCATCGGC
1 AGTGTAAGACCATGTTTGGGACATGGCATCGGC
50323640 ATTTTACCCT
Statistics
Matches: 172, Mismatches: 41, Indels: 22
0.73 0.17 0.09
Matches are distributed among these distances:
46 2 0.01
47 35 0.20
48 130 0.76
49 4 0.02
50 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.29, T:0.26
Consensus pattern (48 bp):
AGTGTAAGACCATGTTTGGGACATGGCATCGGCCACATTATTAGAGCC
Found at i:50323520 original size:96 final size:96
Alignment explanation
Indices: 50323353--50323636 Score: 435
Period size: 96 Copynumber: 3.0 Consensus size: 96
50323343 ATGACATTTG
* * * * *
50323353 GTTGATATGGGTGCGAGTGTAAGACTATGTCTGGGACATGGCATCGGCCACATTATTAGAGCCAG
1 GTTGATATGTGTGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCACATTATGAGAGCCAG
*
50323418 TGTAAGACTATGTTTGGGACATGGCATCAGT
66 TGTAAGACCATGTTTGGGACATGGCATCAGT
* *
50323449 GTTGATATGTGTGCTAGTGTAAAACCATGTTTGGGACATGGCGTCGGCCACATTATGAGAGCCAG
1 GTTGATATGTGTGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCACATTATGAGAGCCAG
* * * * *
50323514 TATAAGACCATGTCTAGGACATAGCATCGGT
66 TGTAAGACCATGTTTGGGACATGGCATCAGT
*
50323545 GTTGATATGTGTGCTAGTGTAAGACCATG-TCGGGACATGGCATCGGCCACATTATGAGAGCCAG
1 GTTGATATGTGTGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCACATTATGAGAGCCAG
50323609 TGTAAGACCATGTTTGGGACATGGCATC
66 TGTAAGACCATGTTTGGGACATGGCATC
50323637 GGCATTTTAC
Statistics
Matches: 168, Mismatches: 20, Indels: 1
0.89 0.11 0.01
Matches are distributed among these distances:
95 57 0.34
96 111 0.66
ACGTcount: A:0.26, C:0.17, G:0.30, T:0.27
Consensus pattern (96 bp):
GTTGATATGTGTGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCACATTATGAGAGCCAG
TGTAAGACCATGTTTGGGACATGGCATCAGT
Found at i:50327683 original size:38 final size:38
Alignment explanation
Indices: 50327627--50327706 Score: 117
Period size: 38 Copynumber: 2.1 Consensus size: 38
50327617 GATGTGTATT
* *
50327627 CGGGTTAAATCCCGCAGG-CTCCGTGCTGGTATTATATC
1 CGGGATAAATCCCGCAGGCCT-AGTGCTGGTATTATATC
*
50327665 CGGGATAAATCCCGCAGGCCTAGTGCTGGTATTATATT
1 CGGGATAAATCCCGCAGGCCTAGTGCTGGTATTATATC
50327703 CGGG
1 CGGG
50327707 CCTTCGTGCC
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
38 36 0.95
39 2 0.05
ACGTcount: A:0.20, C:0.24, G:0.29, T:0.28
Consensus pattern (38 bp):
CGGGATAAATCCCGCAGGCCTAGTGCTGGTATTATATC
Found at i:50327763 original size:43 final size:43
Alignment explanation
Indices: 50327678--50327797 Score: 163
Period size: 43 Copynumber: 2.8 Consensus size: 43
50327668 GATAAATCCC
* * * * *
50327678 GCAGGCCTAGTGCTGGT-AT-TATATTCGGGCCTTCGTGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCATGACTA
*
50327719 GCAGGCTTAGTGCCGGTGATGTGTATTTGGGCCTTCATGACTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCATGACTA
*
50327762 GCAGGCTTAGTGCCAGTGATGTGTATTCGGGCCTTC
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTC
50327798 GTTGTAACAC
Statistics
Matches: 69, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
41 15 0.22
42 2 0.03
43 52 0.75
ACGTcount: A:0.15, C:0.22, G:0.32, T:0.32
Consensus pattern (43 bp):
GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCATGACTA
Found at i:50328669 original size:37 final size:37
Alignment explanation
Indices: 50328616--50328718 Score: 179
Period size: 37 Copynumber: 2.8 Consensus size: 37
50328606 CGAATAGTCG
* *
50328616 CCACACGTAGTTATCGGGTCTTACCTGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
*
50328653 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
50328690 CCACACGTAGTCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
50328719 ATACATTTCC
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 63 1.00
ACGTcount: A:0.24, C:0.31, G:0.20, T:0.24
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:50328945 original size:48 final size:48
Alignment explanation
Indices: 50328891--50329251 Score: 641
Period size: 48 Copynumber: 7.5 Consensus size: 48
50328881 GCCGAATCAC
*
50328891 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCGCAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
*
50328939 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAC
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
* * * *
50328987 TAGCCATTCGGCTTTACCACGTATACATATCTCATACATAGTTCAAAC
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
50329035 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
*
50329083 TTGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
*
50329131 TAGCCATTCGGCTTTACCACATATACATATCTAATACATATTTCACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
50329179 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
*
50329227 TTGCCATTCGGCTTTACCACATATA
1 TAGCCATTCGGCTTTACCACATATA
50329252 TATTTATCTT
Statistics
Matches: 299, Mismatches: 14, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 299 1.00
ACGTcount: A:0.30, C:0.27, G:0.07, T:0.35
Consensus pattern (48 bp):
TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
Found at i:50332828 original size:28 final size:28
Alignment explanation
Indices: 50332786--50332854 Score: 120
Period size: 28 Copynumber: 2.5 Consensus size: 28
50332776 GACTGATTTC
*
50332786 GCACACATAGCGCTCGATTGAAGAACTT
1 GCACACATAGTGCTCGATTGAAGAACTT
50332814 GCACACATAGTGCTCGATTGAAGAACTT
1 GCACACATAGTGCTCGATTGAAGAACTT
*
50332842 GCACACACAGTGC
1 GCACACATAGTGC
50332855 CTCATAATTC
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.32, C:0.26, G:0.22, T:0.20
Consensus pattern (28 bp):
GCACACATAGTGCTCGATTGAAGAACTT
Found at i:50332988 original size:39 final size:40
Alignment explanation
Indices: 50332886--50333019 Score: 252
Period size: 40 Copynumber: 3.4 Consensus size: 40
50332876 CCTTTGAGGT
50332886 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGAC
50332926 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGAC
*
50332966 TTAG-CCAGATATATCACTAGCACGAATGCTCTTCGGGAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGAC
50333005 TTAGCCCGGATATAT
1 TTAGCCCGGATATAT
50333020 AACTCTCAAT
Statistics
Matches: 91, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
39 38 0.42
40 53 0.58
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (40 bp):
TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGAC
Found at i:50334335 original size:37 final size:37
Alignment explanation
Indices: 50334282--50334384 Score: 179
Period size: 37 Copynumber: 2.8 Consensus size: 37
50334272 CGAATAGTCG
* *
50334282 CCACACGTAGTTATCGGGTCTTACCTGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
*
50334319 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
50334356 CCACACGTAGTCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
50334385 ATACATTTCC
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 63 1.00
ACGTcount: A:0.24, C:0.31, G:0.20, T:0.24
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:50334611 original size:48 final size:48
Alignment explanation
Indices: 50334557--50334917 Score: 623
Period size: 48 Copynumber: 7.5 Consensus size: 48
50334547 GCCGAATCAC
* *
50334557 TAGCCATTCGGCTTTAGCACATATACATATCTCATACATATTTCGCAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
*
50334605 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAC
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
* * *
50334653 TAGCCATTCGGCTTTACCACGTATACATATCTCATACATAGTTCACAC
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
*
50334701 TAGCCATTTGGCTTTACCACATATACATATCTCATACATATTTCACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
* *
50334749 TTGCCATTCGTCTTTACCACATATACATATCTCATACATATTTCACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
*
50334797 TAGCCATTCGGCTTTACCACATATACATATCTAATACATATTTCACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
50334845 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
*
50334893 TTGCCATTCGGCTTTACCACATATA
1 TAGCCATTCGGCTTTACCACATATA
50334918 TATTTATCTT
Statistics
Matches: 296, Mismatches: 17, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 296 1.00
ACGTcount: A:0.30, C:0.27, G:0.07, T:0.35
Consensus pattern (48 bp):
TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
Found at i:50337350 original size:43 final size:43
Alignment explanation
Indices: 50337236--50337337 Score: 195
Period size: 43 Copynumber: 2.4 Consensus size: 43
50337226 AGGTGTCACA
50337236 TTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTGTATTCGGGCC
1 TTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTGTATTCGGGCC
50337279 TTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTGTATTCGGGCC
1 TTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTGTATTCGGGCC
*
50337322 TTCGTGCCTAGTAGGC
1 TTCGTGCCTAGCAGGC
50337338 ATAGTATCGG
Statistics
Matches: 58, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 58 1.00
ACGTcount: A:0.10, C:0.25, G:0.34, T:0.30
Consensus pattern (43 bp):
TTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTGTATTCGGGCC
Found at i:50337741 original size:45 final size:43
Alignment explanation
Indices: 50337667--50337793 Score: 116
Period size: 45 Copynumber: 2.9 Consensus size: 43
50337657 TTGACTTGAT
* * * ** *
50337667 TATTTGGGCCTTTGAGCTTAGCAAACTATAATGCCGGTGAGATGC
1 TATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGA-A-AC
*
50337712 TATTCGGGCCTTCGAGCCTAGCAGGCTATAATACCGGT-AAAC
1 TATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAAC
* *
50337754 TAATATCGGGCC-TCGAGCCTAACAGGCGA-AATGCCGGTGA
1 T-AT-TCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGA
50337794 TTTGAGAAAA
Statistics
Matches: 69, Mismatches: 10, Indels: 8
0.79 0.11 0.09
Matches are distributed among these distances:
42 10 0.14
43 19 0.28
44 8 0.12
45 32 0.46
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (43 bp):
TATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAAC
Found at i:50340644 original size:96 final size:95
Alignment explanation
Indices: 50340436--50340706 Score: 407
Period size: 96 Copynumber: 2.8 Consensus size: 95
50340426 CGAACTATAC
*
50340436 AAGGCTTTCAGCCTTTCTACGATACTTATGGCTTATAGCCGTTCTGTTAACTGGCAGCATTGCTG
1 AAGGCTTTCAGCCTTTCTATGATACTTATGGCTTATAGCCGTTCTGTTAACTGGCAGCATTGCTG
**
50340501 CGATATTTACGGCCTGTAGTTGTCCTGTAT
66 CGATATTTACGGCCTGTAGTCATCCTGTAT
* * * * * *
50340531 AAGGCTTTTAGCCTTTCTATGATACTTACGGCTTATAGCTGTTCTATTAAATGGCAGCATTACTG
1 AAGGCTTTCAGCCTTTCTATGATACTTATGGCTTATAGCCGTTCTGTTAACTGGCAGCATTGCTG
*
50340596 CGATTATTTACGGCCTGTAGTCATTCTGTAT
66 CGA-TATTTACGGCCTGTAGTCATCCTGTAT
* **
50340627 AAGGCTTTCAGCCTTTCTGTGATACTTATGGCTTATAGCCGTTCTGTTAACTGGCAGTGTTGCTG
1 AAGGCTTTCAGCCTTTCTATGATACTTATGGCTTATAGCCGTTCTGTTAACTGGCAGCATTGCTG
*
50340692 CGATATTTACAGCCT
66 CGATATTTACGGCCT
50340707 TTAGCCGTCC
Statistics
Matches: 155, Mismatches: 20, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
95 72 0.46
96 83 0.54
ACGTcount: A:0.20, C:0.21, G:0.21, T:0.38
Consensus pattern (95 bp):
AAGGCTTTCAGCCTTTCTATGATACTTATGGCTTATAGCCGTTCTGTTAACTGGCAGCATTGCTG
CGATATTTACGGCCTGTAGTCATCCTGTAT
Found at i:50340739 original size:22 final size:22
Alignment explanation
Indices: 50340714--50340767 Score: 72
Period size: 22 Copynumber: 2.5 Consensus size: 22
50340704 CCTTTAGCCG
*
50340714 TCCTGTCTACAACGTTGAGTCA
1 TCCTGTCTACAACGTTAAGTCA
* **
50340736 TCCTGTCAATGACGTTAAGTCA
1 TCCTGTCTACAACGTTAAGTCA
50340758 TCCTGTCTAC
1 TCCTGTCTAC
50340768 GGCGTAGAGC
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.22, C:0.28, G:0.17, T:0.33
Consensus pattern (22 bp):
TCCTGTCTACAACGTTAAGTCA
Found at i:50343808 original size:27 final size:26
Alignment explanation
Indices: 50343778--50343864 Score: 67
Period size: 27 Copynumber: 3.4 Consensus size: 26
50343768 TAAGGCTTTC
*
50343778 AGCCTTTCTGTGATACTTACGGCCTAT
1 AGCCGTTCTGTGATACTTA-GGCCTAT
*
50343805 AGCCGTTCTGT-ATA---AGG-CTTT
1 AGCCGTTCTGTGATACTTAGGCCTAT
* * *
50343826 CAGCCTTTTTGTGATACTTATGGCTTAT
1 -AGCCGTTCTGTGATACTTA-GGCCTAT
50343854 AGCCGTTCTGT
1 AGCCGTTCTGT
50343865 TAACTGGCAG
Statistics
Matches: 45, Mismatches: 8, Indels: 14
0.67 0.12 0.21
Matches are distributed among these distances:
21 3 0.07
22 11 0.24
23 4 0.09
26 4 0.09
27 21 0.47
28 2 0.04
ACGTcount: A:0.17, C:0.22, G:0.21, T:0.40
Consensus pattern (26 bp):
AGCCGTTCTGTGATACTTAGGCCTAT
Found at i:50343821 original size:49 final size:49
Alignment explanation
Indices: 50343763--50343864 Score: 177
Period size: 49 Copynumber: 2.1 Consensus size: 49
50343753 TGTAGTTGTC
50343763 CTGTATAAGGCTTTCAGCCTTTCTGTGATACTTACGGCCTATAGCCGTT
1 CTGTATAAGGCTTTCAGCCTTTCTGTGATACTTACGGCCTATAGCCGTT
* * *
50343812 CTGTATAAGGCTTTCAGCCTTTTTGTGATACTTATGGCTTATAGCCGTT
1 CTGTATAAGGCTTTCAGCCTTTCTGTGATACTTACGGCCTATAGCCGTT
50343861 CTGT
1 CTGT
50343865 TAACTGGCAG
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
49 50 1.00
ACGTcount: A:0.18, C:0.22, G:0.21, T:0.40
Consensus pattern (49 bp):
CTGTATAAGGCTTTCAGCCTTTCTGTGATACTTACGGCCTATAGCCGTT
Found at i:50343975 original size:22 final size:22
Alignment explanation
Indices: 50343905--50343976 Score: 99
Period size: 22 Copynumber: 3.3 Consensus size: 22
50343895 CCTTTAGCTG
*
50343905 TCCTATCTACGACGTTAAGTCA
1 TCCTGTCTACGACGTTAAGTCA
* *
50343927 TCCTTTCTACGACGTTAAGTCG
1 TCCTGTCTACGACGTTAAGTCA
* *
50343949 TCCTGTCTACGGCGTTGAGTCA
1 TCCTGTCTACGACGTTAAGTCA
50343971 TCCTGT
1 TCCTGT
50343977 TGACTTAGTG
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 44 1.00
ACGTcount: A:0.18, C:0.28, G:0.19, T:0.35
Consensus pattern (22 bp):
TCCTGTCTACGACGTTAAGTCA
Found at i:50347127 original size:92 final size:93
Alignment explanation
Indices: 50346944--50347230 Score: 355
Period size: 95 Copynumber: 3.1 Consensus size: 93
50346934 GGAAGTGGAC
* * * * * *
50346944 GGCCAGTAGCCGTTCTGTATAAGGCTTTCAACCTTTCTACGATATTTATGGCTTATAGCCA-TTC
1 GGCCTGTAGTCGTCCTGTATAAGGCTTTCAGCCTTTCTATGATACTTATGGC-T-TAG-CAGTTC
*
50347008 TGTTAACTGGCAGCGTTGCTGCGATATTTAT
63 TGTTAACTGGCAGCGTTGCTGTGATATTTAT
* * *
50347039 GGCCTGTAGTTGTCCTGTATAAGGCTTTCAGCCTTTCTGTGATACTTACGGC-TAGCAGTTCTGT
1 GGCCTGTAGTCGTCCTGTATAAGGCTTTCAGCCTTTCTATGATACTTATGGCTTAGCAGTTCTGT
* *
50347103 TAA-TAGGCAACGTTGCTGTGATATTTAC
66 TAACT-GGCAGCGTTGCTGTGATATTTAT
* * * *
50347131 GGCTTGTAGTCGTTCTGTATAAGGCTTTCAGCCTTTCTATGGTACTTATGGCTTATAGCCGTTCT
1 GGCCTGTAGTCGTCCTGTATAAGGCTTTCAGCCTTTCTATGATACTTATGGC-T-TAGCAGTTCT
50347196 GTTAACTGGCAGCGTTGCTGTGATATTTAT
64 GTTAACTGGCAGCGTTGCTGTGATATTTAT
50347226 GGCCT
1 GGCCT
50347231 TTAACCGTCT
Statistics
Matches: 164, Mismatches: 22, Indels: 12
0.83 0.11 0.06
Matches are distributed among these distances:
91 3 0.02
92 78 0.48
95 82 0.50
96 1 0.01
ACGTcount: A:0.19, C:0.20, G:0.23, T:0.38
Consensus pattern (93 bp):
GGCCTGTAGTCGTCCTGTATAAGGCTTTCAGCCTTTCTATGATACTTATGGCTTAGCAGTTCTGT
TAACTGGCAGCGTTGCTGTGATATTTAT
Found at i:50347261 original size:22 final size:22
Alignment explanation
Indices: 50347235--50347287 Score: 70
Period size: 22 Copynumber: 2.4 Consensus size: 22
50347225 TGGCCTTTAA
* *
50347235 CCGTCTTGTCTATGACGTTGAG
1 CCGTCCTGTCTACGACGTTGAG
* *
50347257 TCGTCCTGTCTACGGCGTTGAG
1 CCGTCCTGTCTACGACGTTGAG
50347279 CCGTCCTGT
1 CCGTCCTGT
50347288 TGTCTTAGTG
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.09, C:0.28, G:0.28, T:0.34
Consensus pattern (22 bp):
CCGTCCTGTCTACGACGTTGAG
Found at i:50355558 original size:19 final size:20
Alignment explanation
Indices: 50355534--50355571 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
50355524 GGTATCACCA
50355534 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
50355553 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
50355572 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:50355942 original size:46 final size:46
Alignment explanation
Indices: 50355796--50355966 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 46
50355786 AACCCGCCCC
* * *
50355796 TAAGTGAACTCGGACTCAACTCAACGAGCTCGG-CGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* *
50355841 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT---
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCA
* *
50355888 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
50355933 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
50355967 TGCTCAACCA
Statistics
Matches: 106, Mismatches: 11, Indels: 17
0.79 0.08 0.13
Matches are distributed among these distances:
42 6 0.06
43 1 0.01
45 34 0.32
46 58 0.55
47 2 0.02
49 1 0.01
50 4 0.04
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:50355957 original size:92 final size:91
Alignment explanation
Indices: 50355801--50355969 Score: 302
Period size: 92 Copynumber: 1.8 Consensus size: 91
50355791 GCCCCTAAGT
*
50355801 GAACTCGGACTCAACTCAACGAGCTCGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 GAACTCGGACTCAACTCAACGAGCTCGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
50355866 GAGTTCGGATGCCTAGTTACATTCAC
66 GAGTTCGGATGCCTAGTTACATTCAC
* *
50355892 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGG-CATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
50355957 CGAGTTCGGATGC
65 CGAGTTCGGATGC
50355970 TCAACCATCC
Statistics
Matches: 74, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
91 27 0.36
92 47 0.64
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.22
Consensus pattern (91 bp):
GAACTCGGACTCAACTCAACGAGCTCGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
GAGTTCGGATGCCTAGTTACATTCAC
Found at i:50355985 original size:46 final size:46
Alignment explanation
Indices: 50355798--50355985 Score: 144
Period size: 46 Copynumber: 4.1 Consensus size: 46
50355788 CCCGCCCCTA
* * * *
50355798 AGTGAACTCGGACTCAACTCAACGAGCTCGG-CGTTC--GCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCC-T
*
50355842 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CTAGTTA-CATTC-
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACCATCCT
* * * *
50355890 A-CGAACTCGGACTCAACTCAACGAGTTCGGACAT-TTGCATCCAT--A
1 AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCT-CAACCATCCT
50355935 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
50355981 AGTGA
1 AGTGA
50355986 CATGTCACTT
Statistics
Matches: 115, Mismatches: 11, Indels: 33
0.72 0.07 0.21
Matches are distributed among these distances:
44 8 0.07
45 33 0.29
46 65 0.57
47 1 0.01
48 3 0.03
49 1 0.01
50 4 0.03
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
Found at i:50363357 original size:39 final size:39
Alignment explanation
Indices: 50363303--50363588 Score: 430
Period size: 39 Copynumber: 7.3 Consensus size: 39
50363293 TAATGAAGAA
* *
50363303 TTATATCCGAGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGCCCCGAAGGCATTCGTGCTGGTG
*
50363342 TTATATCCGGGCTAAGCCCCGAAGGCATTCGTGCTAGTG
1 TTATATCCGGGCTAAGCCCCGAAGGCATTCGTGCTGGTG
* *
50363381 TTATATCCAGGCTAAGCCCCGAAGGCATTCGTGCTAGTG
1 TTATATCCGGGCTAAGCCCCGAAGGCATTCGTGCTGGTG
*
50363420 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGCCCCGAAGGCATTCGTGCTGGTG
*
50363459 TTATATCCGGGCTAAGCCCCGAAGGCGTTCGTGCTGGTG
1 TTATATCCGGGCTAAGCCCCGAAGGCATTCGTGCTGGTG
* *
50363498 TTATATCCGAGCTAAGCCCCGAAGTCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGCCCCGAAGGCATTCGTGCTGGTG
* * * *
50363537 TTATATCCGGGCTAAAGTCCCGTAGGC-TTTGTGCTGGTA
1 TTATATCCGGGCT-AAGCCCCGAAGGCATTCGTGCTGGTG
*
50363576 TTATATTCGGGCT
1 TTATATCCGGGCT
50363589 TAAAGTCCCG
Statistics
Matches: 227, Mismatches: 19, Indels: 2
0.92 0.08 0.01
Matches are distributed among these distances:
39 217 0.96
40 10 0.04
ACGTcount: A:0.19, C:0.24, G:0.28, T:0.29
Consensus pattern (39 bp):
TTATATCCGGGCTAAGCCCCGAAGGCATTCGTGCTGGTG
Found at i:50367055 original size:36 final size:37
Alignment explanation
Indices: 50366983--50367060 Score: 106
Period size: 36 Copynumber: 2.1 Consensus size: 37
50366973 TTATTACGAA
* *
50366983 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCTCCACACGAAGTCATCGG
*
50367020 GTCTTACCC-GACAAAAT-TCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCT-CCACACGAAGTCATCGG
50367056 GTCTT
1 GTCTT
50367061 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
35 1 0.03
36 27 0.73
37 9 0.24
ACGTcount: A:0.26, C:0.31, G:0.18, T:0.26
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCTCCACACGAAGTCATCGG
Found at i:50367257 original size:47 final size:47
Alignment explanation
Indices: 50367179--50367447 Score: 394
Period size: 47 Copynumber: 5.6 Consensus size: 47
50367169 CCCTTCGGGA
* * * * * * *
50367179 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACGCTTTCACATTCATCACATCGGCCATTAGGC
* * *
50367226 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACGCTTTCACATTCATCACATCGGCCATTAGGC
50367273 CTTATCACATATATACGCTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACGCTTTCACATTCATCACATCGGCCATTAGGC
50367320 CTTATCACATATATACGCTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACGCTTTCACATTCATCACATCGGCCATTAGGC
50367367 CTTATCACATATATACGCTTTCACATTCATCACATCGGGCCATTAGGC
1 CTTATCACATATATACGCTTTCACATTCATCACATC-GGCCATTAGGC
* *
50367415 CTTATACATATATATATACACTTTCACATTCAT
1 CTTAT-C--ACATATATACGCTTTCACATTCAT
50367448 TCAAATATAC
Statistics
Matches: 205, Mismatches: 13, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
47 166 0.81
48 16 0.08
49 1 0.00
51 22 0.11
ACGTcount: A:0.28, C:0.30, G:0.10, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACGCTTTCACATTCATCACATCGGCCATTAGGC
Found at i:50370288 original size:25 final size:28
Alignment explanation
Indices: 50370249--50370323 Score: 93
Period size: 29 Copynumber: 2.7 Consensus size: 28
50370239 CTTAATAATC
*
50370249 AACCACGCACACTTAGTGCCA-C-TT-TA
1 AACC-CGCACACTTAGTGCCAGCATTCCA
50370275 AACCCGCACACTTAGTGCCATGCATTCCA
1 AACCCGCACACTTAGTGCCA-GCATTCCA
*
50370304 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
50370324 ATCTCACAAC
Statistics
Matches: 43, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
25 16 0.37
26 4 0.09
27 1 0.02
28 2 0.05
29 20 0.47
ACGTcount: A:0.28, C:0.37, G:0.15, T:0.20
Consensus pattern (28 bp):
AACCCGCACACTTAGTGCCAGCATTCCA
Found at i:50372276 original size:37 final size:37
Alignment explanation
Indices: 50372226--50372304 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
50372216 TTATTACGAA
* *
50372226 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
50372263 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
50372300 GTCTT
1 GTCTT
50372305 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:50372501 original size:47 final size:47
Alignment explanation
Indices: 50372423--50372689 Score: 417
Period size: 47 Copynumber: 5.6 Consensus size: 47
50372413 CCCTTCGGGA
* * * * * *
50372423 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
50372470 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
50372517 CTTATCACATATATACGCTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
50372564 CTTATCACATATATACGCTTTCACATTCATCACATCGGCAATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
50372611 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
50372658 CTTATCACATATATATACACTTTCACATTCAT
1 CTTATCAC--ATATATACACTTTCACATTCAT
50372690 TCAAATATAC
Statistics
Matches: 204, Mismatches: 14, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
47 182 0.89
49 22 0.11
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:50377783 original size:39 final size:39
Alignment explanation
Indices: 50377729--50378012 Score: 487
Period size: 39 Copynumber: 7.3 Consensus size: 39
50377719 TAATGGAGAA
* *
50377729 TTATATCCGGGCTAAGTCTCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGCCCCGAAGGCATTCGTGCTGGTG
50377768 TTATATCCGGGCTAAGCCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGCCCCGAAGGCATTCGTGCTGGTG
* *
50377807 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGATGGTG
1 TTATATCCGGGCTAAGCCCCGAAGGCATTCGTGCTGGTG
*
50377846 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGCCCCGAAGGCATTCGTGCTGGTG
* *
50377885 TTATATCCAGGCTAAGCCCCAAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGCCCCGAAGGCATTCGTGCTGGTG
50377924 TTATATCCGGGCTAAGCCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGCCCCGAAGGCATTCGTGCTGGTG
* *
50377963 TTATATTCGAGCTAAGCCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGCCCCGAAGGCATTCGTGCTGGTG
50378002 TTATATCCGGG
1 TTATATCCGGG
50378013 TTAAAGTCTC
Statistics
Matches: 231, Mismatches: 14, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 231 1.00
ACGTcount: A:0.19, C:0.23, G:0.30, T:0.28
Consensus pattern (39 bp):
TTATATCCGGGCTAAGCCCCGAAGGCATTCGTGCTGGTG
Found at i:50382917 original size:27 final size:27
Alignment explanation
Indices: 50382887--50383064 Score: 180
Period size: 27 Copynumber: 6.6 Consensus size: 27
50382877 ATATTGAGCC
* *
50382887 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
50382914 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
50382941 CGCACACTTAGTGCTACATAGTCAGACT
1 CGCACACTTAGTGCTACATAATCA-ACT
** ** *
50382969 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
50382996 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
50383023 CGCACACTTAGTGCAACATAGTCGAA-T
1 CGCACACTTAGTGCTACATAATC-AACT
50383050 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
50383065 GTACAATTTA
Statistics
Matches: 129, Mismatches: 18, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
27 104 0.81
28 25 0.19
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:50383026 original size:82 final size:81
Alignment explanation
Indices: 50382908--50383063 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
50382898 TGCTATATAA
* * *
50382908 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAGACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTC-GAATCGCA
50382973 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
50382990 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCGAATCGCA
50383054 CACTTAGTGC
65 CACTTAGTGC
50383064 TGTACAATTT
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 18 0.27
82 48 0.73
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCGAATCGCAC
ACTTAGTGCCGCATGG
Found at i:50396145 original size:19 final size:20
Alignment explanation
Indices: 50396103--50396151 Score: 66
Period size: 19 Copynumber: 2.5 Consensus size: 20
50396093 TCATGCTTTC
*
50396103 TATTCACATTTTCATATTCA
1 TATTCACATTTTCATAATCA
50396123 -ATTCACATTTTCA-AATCA
1 TATTCACATTTTCATAATCA
50396141 TATTCCACATT
1 TATT-CACATT
50396152 CGCATTTCTT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
18 4 0.15
19 16 0.62
20 6 0.23
ACGTcount: A:0.33, C:0.22, G:0.00, T:0.45
Consensus pattern (20 bp):
TATTCACATTTTCATAATCA
Found at i:50414155 original size:25 final size:25
Alignment explanation
Indices: 50414127--50414178 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
50414117 AAAATGAGAA
50414127 GTAAAAATATAAAATAAAGGAAAAT
1 GTAAAAATATAAAATAAAGGAAAAT
50414152 GTAAAAATATAAAATAAAGGAAAAT
1 GTAAAAATATAAAATAAAGGAAAAT
50414177 GT
1 GT
50414179 GGGATGATGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.65, C:0.00, G:0.13, T:0.21
Consensus pattern (25 bp):
GTAAAAATATAAAATAAAGGAAAAT
Found at i:50425272 original size:92 final size:92
Alignment explanation
Indices: 50425107--50425302 Score: 293
Period size: 92 Copynumber: 2.1 Consensus size: 92
50425097 GGGTGATCGT
* * * *
50425107 CCGATAACACACCAGATGTACATAGTGCAAAGCCCATAGGCTAAATTTTCTCTCCCGATAACAAG
1 CCGATAACACACCAGATGCACATAGTGCAAAGCACATAGGCTAAATATTCTCCCCCGATAACAAG
*
50425172 CCATATTGCTCATAAGAGCTATTCCAA
66 CCAGATTGCTCATAAGAGCTATTCCAA
* *
50425199 CCGATAACACACCAGATGCACATAGTGCAAAGCACGTAGGCTAAATATTCTCCCCCGATAACATG
1 CCGATAACACACCAGATGCACATAGTGCAAAGCACATAGGCTAAATATTCTCCCCCGATAACAAG
** *
50425264 CCAGATTGCTCATAAGATTTATTTCAA
66 CCAGATTGCTCATAAGAGCTATTCCAA
*
50425291 CCGATAAAACAC
1 CCGATAACACAC
50425303 TAGAATCATC
Statistics
Matches: 93, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
92 93 1.00
ACGTcount: A:0.36, C:0.27, G:0.14, T:0.23
Consensus pattern (92 bp):
CCGATAACACACCAGATGCACATAGTGCAAAGCACATAGGCTAAATATTCTCCCCCGATAACAAG
CCAGATTGCTCATAAGAGCTATTCCAA
Found at i:50430634 original size:108 final size:110
Alignment explanation
Indices: 50430482--50430682 Score: 318
Period size: 108 Copynumber: 1.8 Consensus size: 110
50430472 ATCCTTTTGA
* *
50430482 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATG-AA-CTCACCAA
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTA-GAAACCTCACCAA
50430545 -TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
65 TTGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
* * * *
50430590 AACTTATCAATGCCATGTCTTGACATGGTCTTGCATGATTTCCTTGCCTTAGAAACCTTACCAAT
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
50430655 TGCCATGCCTTGGCATGGTCTTACATGG
66 TGCCATGCCTTGGCATGGTCTTACATGG
50430683 TATTCTTAAA
Statistics
Matches: 84, Mismatches: 6, Indels: 4
0.89 0.06 0.04
Matches are distributed among these distances:
107 1 0.01
108 48 0.57
109 7 0.08
110 28 0.33
ACGTcount: A:0.22, C:0.25, G:0.18, T:0.34
Consensus pattern (110 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
Found at i:50430637 original size:55 final size:53
Alignment explanation
Indices: 50430435--50430681 Score: 222
Period size: 55 Copynumber: 4.7 Consensus size: 53
50430425 ATGCGGGTAC
* * * * *
50430435 CTTACCATTGCCATGACTTGTCATGGTCTTACGTGGTATCCTT---TT-GA-AA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACAT-GTATCCTTGCCTTATAGAA
* *
50430484 CTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAT-GAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACAT-GTATCCTTGCCTTATAGAA
* * *
50430537 CTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGTAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACAT-GTATCC-TTGCCTTATAG-AA
* * * * *
50430592 CTTATCAATGCCATGTCTTGACATGGTCTTGCATGATTTCCTTGCCTTAGA-AA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATG-TATCCTTGCCTTATAGAA
*
50430645 CCTTACCAATTGCCATGCCTTGGCATGGTCTTACATG
1 -CTTACCAA-TGCCATGCCTTGACATGGTCTTACATG
50430682 GTATTCTTAA
Statistics
Matches: 165, Mismatches: 21, Indels: 18
0.81 0.10 0.09
Matches are distributed among these distances:
49 40 0.24
52 4 0.02
53 46 0.28
54 9 0.05
55 64 0.39
56 2 0.01
ACGTcount: A:0.21, C:0.25, G:0.18, T:0.36
Consensus pattern (53 bp):
CTTACCAATGCCATGCCTTGACATGGTCTTACATGTATCCTTGCCTTATAGAA
Found at i:50434306 original size:53 final size:52
Alignment explanation
Indices: 50434127--50434365 Score: 227
Period size: 55 Copynumber: 4.5 Consensus size: 52
50434117 ATTAGAGTTT
* *
50434127 AAGGATACCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGG-CATTGGTAA-G-TTCTAAGGC
* * * * * *
50434182 AAGGAAATCATGTAATACCATGTCAAGACATGGCATTGATAACTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTT-C--TAAGGC
* * *
50434237 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTC-TAAGGC
* *
50434290 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTT-TCAA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCT-AAGGC
* *
50434339 AAGGATACCACGTAAGACCATGACAAG
1 AAGGATACCATGTAAGACCATGCCAAG
50434366 TTATGGTAAT
Statistics
Matches: 154, Mismatches: 24, Indels: 18
0.79 0.12 0.09
Matches are distributed among these distances:
49 25 0.16
51 1 0.01
52 8 0.05
53 43 0.28
54 8 0.05
55 65 0.42
56 4 0.03
ACGTcount: A:0.37, C:0.18, G:0.24, T:0.21
Consensus pattern (52 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCTAAGGC
Found at i:50434604 original size:16 final size:16
Alignment explanation
Indices: 50434583--50434613 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
50434573 ATAAATTTGG
50434583 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
50434599 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
50434614 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:50437335 original size:21 final size:21
Alignment explanation
Indices: 50437310--50437351 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
50437300 TAATAAATTT
50437310 ACTAAATATAATATTTACATA
1 ACTAAATATAATATTTACATA
*
50437331 ACTAAATATATTATTTACATA
1 ACTAAATATAATATTTACATA
50437352 TTTGACAGAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.50, C:0.10, G:0.00, T:0.40
Consensus pattern (21 bp):
ACTAAATATAATATTTACATA
Found at i:50442323 original size:59 final size:54
Alignment explanation
Indices: 50442250--50442384 Score: 166
Period size: 54 Copynumber: 2.4 Consensus size: 54
50442240 TAGGGTCTAA
* *
50442250 ATTTAGCCTGGACTGGTAATTCAGATCCAA-ACTC-ATTAGAGTAATTGTCATTGCAGGGG
1 ATTTAGCCTGGACTGGTAATCCAGA--CAATACTCTA-T-GAGT--TTAT-ATTGCAGGGG
*
50442309 ATTTAGCCTGGACTGGTAATCCCGACAATACTCTATGAGTTTATATTGCAGGGG
1 ATTTAGCCTGGACTGGTAATCCAGACAATACTCTATGAGTTTATATTGCAGGGG
50442363 ATTTAGCCTGGACTGGTAATCC
1 ATTTAGCCTGGACTGGTAATCC
50442385 TGCTGCAAGG
Statistics
Matches: 71, Mismatches: 3, Indels: 9
0.86 0.04 0.11
Matches are distributed among these distances:
54 32 0.45
55 3 0.04
57 7 0.10
58 5 0.07
59 24 0.34
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.31
Consensus pattern (54 bp):
ATTTAGCCTGGACTGGTAATCCAGACAATACTCTATGAGTTTATATTGCAGGGG
Found at i:50444142 original size:33 final size:33
Alignment explanation
Indices: 50444105--50444171 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
50444095 ACAAGTTCTT
50444105 CCTATAGTTGTTTCAATTTCCCATAATAAGTCA
1 CCTATAGTTGTTTCAATTTCCCATAATAAGTCA
50444138 CCTATAGTTGTTTCAATTTCCCATAATAAGTCA
1 CCTATAGTTGTTTCAATTTCCCATAATAAGTCA
50444171 C
1 C
50444172 AATTGGAAAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.30, C:0.22, G:0.09, T:0.39
Consensus pattern (33 bp):
CCTATAGTTGTTTCAATTTCCCATAATAAGTCA
Found at i:50445409 original size:17 final size:17
Alignment explanation
Indices: 50445398--50445431 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
50445388 AATTTATAAT
50445398 TTTATATTATTTAAAAC
1 TTTATATTATTTAAAAC
*
50445415 TTTATTTTATTTCAAAA
1 TTTATATTATTT-AAAA
50445432 TAAATTATTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.38, C:0.06, G:0.00, T:0.56
Consensus pattern (17 bp):
TTTATATTATTTAAAAC
Found at i:50445538 original size:30 final size:30
Alignment explanation
Indices: 50445483--50445549 Score: 91
Period size: 30 Copynumber: 2.2 Consensus size: 30
50445473 TATATATTAC
50445483 TTTTAAATTTAAAAAAAAAACTTTAAAAAT
1 TTTTAAATTTAAAAAAAAAACTTTAAAAAT
* * *
50445513 TATTTAAATTT-TAAAAAATATTTTAAAAAT
1 T-TTTAAATTTAAAAAAAAAACTTTAAAAAT
50445543 TTTTAAA
1 TTTTAAA
50445550 ATTATTTCTA
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
29 6 0.18
30 18 0.55
31 9 0.27
ACGTcount: A:0.55, C:0.01, G:0.00, T:0.43
Consensus pattern (30 bp):
TTTTAAATTTAAAAAAAAAACTTTAAAAAT
Found at i:50445564 original size:21 final size:21
Alignment explanation
Indices: 50445498--50445562 Score: 64
Period size: 21 Copynumber: 3.2 Consensus size: 21
50445488 AATTTAAAAA
* *
50445498 AAAAACTTTAAAAATTA-TTT
1 AAAAATTTTAAAAAATATTTT
50445518 --AAATTTTAAAAAATATTTT
1 AAAAATTTTAAAAAATATTTT
* *
50445537 AAAAATTTTTAAAATTATTTCT
1 AAAAATTTTAAAAAATATTT-T
50445559 AAAA
1 AAAA
50445563 TTAAATTTTA
Statistics
Matches: 37, Mismatches: 4, Indels: 6
0.79 0.09 0.13
Matches are distributed among these distances:
18 13 0.35
19 3 0.08
21 16 0.43
22 5 0.14
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.43
Consensus pattern (21 bp):
AAAAATTTTAAAAAATATTTT
Found at i:50445651 original size:70 final size:72
Alignment explanation
Indices: 50445535--50445705 Score: 196
Period size: 72 Copynumber: 2.5 Consensus size: 72
50445525 AAAAAATATT
** * *
50445535 TTAAAAATT-TTT-AAAA-TTATTTCTAAAA--TTAAATTTTATTAGATATATATTATTTCTAAA
1 TTAAAAATTATTTAAAAATTTATTTCTAAAATTTTAAATAGTATTAAATATATATTATTTATAAA
50445595 -ATAAAA
66 TATAAAA
50445601 -TAAACAATTATTTAAAAATTTATTTCTAAAATTTTAAA-AGTATTAAATATATATTATTTATAA
1 TTAAA-AATTATTTAAAAATTTATTTCTAAAATTTTAAATAGTATTAAATATATATTATTTATAA
*
50445664 ATTTTAAAA
65 A-TATAAAA
* * *
50445673 TTTAAGATTATTTAAAAATTTATTCCTAAAATT
1 TTAAAAATTATTTAAAAATTTATTTCTAAAATT
50445706 AAAATTAAAA
Statistics
Matches: 88, Mismatches: 8, Indels: 12
0.81 0.07 0.11
Matches are distributed among these distances:
65 4 0.05
66 4 0.05
67 3 0.03
68 4 0.05
69 12 0.14
70 22 0.25
71 5 0.06
72 31 0.35
73 3 0.03
ACGTcount: A:0.48, C:0.04, G:0.02, T:0.47
Consensus pattern (72 bp):
TTAAAAATTATTTAAAAATTTATTTCTAAAATTTTAAATAGTATTAAATATATATTATTTATAAA
TATAAAA
Found at i:50446677 original size:3 final size:3
Alignment explanation
Indices: 50446671--50446700 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
50446661 TTCATGTTCG
50446671 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
50446701 TGAATCAAAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:50450139 original size:18 final size:18
Alignment explanation
Indices: 50450116--50450151 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
50450106 GGGTTTGGGG
* *
50450116 TTTAAATTTTTTTAAAAT
1 TTTAAAATTTTATAAAAT
50450134 TTTAAAATTTTATAAAAT
1 TTTAAAATTTTATAAAAT
50450152 ACTAAATTAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (18 bp):
TTTAAAATTTTATAAAAT
Found at i:50453446 original size:40 final size:40
Alignment explanation
Indices: 50453357--50453620 Score: 360
Period size: 40 Copynumber: 6.7 Consensus size: 40
50453347 TTGAATGCTG
* *
50453357 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAA-A
* *
50453396 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
50453436 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
50453475 TCCGGGTTAAGTCCCGAAGGCATTTGTGCAAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
50453515 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
50453555 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
50453596 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
50453621 AACGAGGAGC
Statistics
Matches: 206, Mismatches: 12, Indels: 13
0.89 0.05 0.06
Matches are distributed among these distances:
39 54 0.26
40 142 0.69
41 10 0.05
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:50453638 original size:120 final size:118
Alignment explanation
Indices: 50453357--50453653 Score: 347
Period size: 119 Copynumber: 2.5 Consensus size: 118
50453347 TTGAATGCTG
*
50453357 TCCGGGCTAAGTCCCGAAGGC-TTGTG--CTAAGTGAC-AATATCCGGACTAAGAT-CCGAAGGC
1 TCCGGGCTAAGTCCCGAAGGCATT-TGAAC-AAGTGACTAA-ATCCGG-TTAA-ATCCCGAAGGC
*
50453417 ATTTGTGCGAGATACTAAATCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
61 ATTTGTGCGAGATACTAAATCCGGGCTAAGCCCGAAGGCATTTGTGCGAATTACTAAA
* ** * *
50453475 TCCGGGTTAAGTCCCGAAGGCATTTGTGCAAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGAACAAGTGACTAAATCC-GGTTAAATCCCGAAGGCATTT
* *
50453540 GTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAA
65 GTGCGAGATACTAAATCCGGGCTAAG-CCCGAAGGCATTTGTGCGAATTACTA-AA
* * * *
50453596 -CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCCGGTTAAATTCCGAAGG
1 TCCGGGCTAAGTCCCGAAGGCATTTGAACAAGTGA-CTAAATCCGGTTAAATCCCGAAGG
50453654 TACGTGATTT
Statistics
Matches: 154, Mismatches: 16, Indels: 17
0.82 0.09 0.09
Matches are distributed among these distances:
118 23 0.15
119 66 0.43
120 63 0.41
121 2 0.01
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (118 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGAACAAGTGACTAAATCCGGTTAAATCCCGAAGGCATTTG
TGCGAGATACTAAATCCGGGCTAAGCCCGAAGGCATTTGTGCGAATTACTAAA
Found at i:50499848 original size:47 final size:48
Alignment explanation
Indices: 50499738--50499849 Score: 149
Period size: 47 Copynumber: 2.4 Consensus size: 48
50499728 CCGGGATAAG
*
50499738 CACATAGTGCTTCATCGGAACAAATTCCGGAACTTTAACATTATAGTA
1 CACATAGTGCTTCATCGGAACAAATTCCGGAACTTTAACAGTATAGTA
* * *
50499786 CACAAAGTACTTCATCGGAACAAA-TCCGGAACTTTAACAGTAGTCG-A
1 CACATAGTGCTTCATCGGAACAAATTCCGGAACTTTAACAGTA-TAGTA
50499833 CACATAGTG-TCTCATCG
1 CACATAGTGCT-TCATCG
50499850 ACTCAATGTC
Statistics
Matches: 56, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
46 1 0.02
47 31 0.55
48 24 0.43
ACGTcount: A:0.35, C:0.23, G:0.16, T:0.26
Consensus pattern (48 bp):
CACATAGTGCTTCATCGGAACAAATTCCGGAACTTTAACAGTATAGTA
Found at i:50500623 original size:4 final size:4
Alignment explanation
Indices: 50500614--50500650 Score: 74
Period size: 4 Copynumber: 9.2 Consensus size: 4
50500604 CCCTTTTCTA
50500614 TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC T
1 TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC T
50500651 CACGTTTGCT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 33 1.00
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (4 bp):
TTTC
Found at i:50501522 original size:25 final size:26
Alignment explanation
Indices: 50501494--50501548 Score: 69
Period size: 25 Copynumber: 2.2 Consensus size: 26
50501484 AGCTCCTCCA
*
50501494 AGCTGAA-TAACGGCAAGCTCATACG
1 AGCTGAAGTAACGGCAAGCTCATAAG
* *
50501519 AGCT-AAGTATCGGTAAGCTCATAAG
1 AGCTGAAGTAACGGCAAGCTCATAAG
50501544 AGCTG
1 AGCTG
50501549 GAATCGATAA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
24 2 0.08
25 23 0.92
ACGTcount: A:0.35, C:0.20, G:0.25, T:0.20
Consensus pattern (26 bp):
AGCTGAAGTAACGGCAAGCTCATAAG
Found at i:50507480 original size:27 final size:27
Alignment explanation
Indices: 50507442--50507534 Score: 134
Period size: 27 Copynumber: 3.4 Consensus size: 27
50507432 ATTTGTAGAA
* * *
50507442 TTACCATCGATTTACAGAATTACTGTT
1 TTACCCTCGATTTACAAAATTACCGTT
*
50507469 TTACCCTCGATTTACAAAATTACCATT
1 TTACCCTCGATTTACAAAATTACCGTT
50507496 TTACCCTC-AGTTTACAAAATTACCGTT
1 TTACCCTCGA-TTTACAAAATTACCGTT
50507523 TTACCCTCGATT
1 TTACCCTCGATT
50507535 GTGAAATTAC
Statistics
Matches: 59, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
26 1 0.02
27 57 0.97
28 1 0.02
ACGTcount: A:0.29, C:0.25, G:0.08, T:0.39
Consensus pattern (27 bp):
TTACCCTCGATTTACAAAATTACCGTT
Found at i:50507596 original size:27 final size:27
Alignment explanation
Indices: 50507566--50507774 Score: 195
Period size: 27 Copynumber: 7.7 Consensus size: 27
50507556 TGTAGGATAG
*
50507566 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCTTAGTTTGTAA
50507593 AATTACCAAAATACCCTTAGTTTGTAA
1 AATTACCAAAATACCCTTAGTTTGTAA
* * * *
50507620 AATTACCGAAATACCATTGGTTTGTGA
1 AATTACCAAAATACCCTTAGTTTGTAA
* * * *
50507647 AATTATCGAAATACCCTCAATTTGTAA
1 AATTACCAAAATACCCTTAGTTTGTAA
* **
50507674 AATTACCAAAATACCCTTAATTTACAA
1 AATTACCAAAATACCCTTAGTTTGTAA
* *
50507701 AATTA-CAGAAATACCCTTGACTTTCTAAA
1 AATTACCA-AAATACCCTT-AGTTTGT-AA
*** * *
50507730 AATTATTGAAATACCCTTGGTTTGTAG
1 AATTACCAAAATACCCTTAGTTTGTAA
* *
50507757 ATTTACCAAAACACCCTT
1 AATTACCAAAATACCCTT
50507775 GTAGGATGAA
Statistics
Matches: 148, Mismatches: 30, Indels: 8
0.80 0.16 0.04
Matches are distributed among these distances:
26 2 0.01
27 121 0.82
28 8 0.05
29 17 0.11
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.33
Consensus pattern (27 bp):
AATTACCAAAATACCCTTAGTTTGTAA
Found at i:50507659 original size:81 final size:83
Alignment explanation
Indices: 50507574--50507774 Score: 237
Period size: 81 Copynumber: 2.4 Consensus size: 83
50507564 AGAATTACCA
* ** *
50507574 AAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTAGTTTGTAAAATTACCGAAATACCATTG
1 AAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTAATTTACAAAATTACAGAAATACCATTG
* * *
50507639 -GTTTGT-GAAATTATCG
66 ACTTTCTAAAAATTATCG
* *
50507655 AAATA-CCCTCAATTTGTAAAATTACCAAAATACCCTTAATTTACAAAATTACAGAAATACCCTT
1 AAATACCCCT-AGTTTGTAAAATTACCAAAATACCCTTAATTTACAAAATTACAGAAATACCATT
*
50507719 GACTTTCTAAAAATTATTG
65 GACTTTCTAAAAATTATCG
* * * * *
50507738 AAATACCCTTGGTTTGTAGATTTACCAAAACACCCTT
1 AAATACCCCTAGTTTGTAAAATTACCAAAATACCCTT
50507775 GTAGGATGAA
Statistics
Matches: 100, Mismatches: 16, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
80 4 0.04
81 54 0.54
82 4 0.04
83 35 0.35
84 3 0.03
ACGTcount: A:0.39, C:0.19, G:0.09, T:0.33
Consensus pattern (83 bp):
AAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTAATTTACAAAATTACAGAAATACCATTG
ACTTTCTAAAAATTATCG
Found at i:50507870 original size:27 final size:27
Alignment explanation
Indices: 50507793--50507870 Score: 88
Period size: 27 Copynumber: 2.9 Consensus size: 27
50507783 AAATGATTAA
* *
50507793 AATACCCCT-AATAGGTAAAAAGACCGT
1 AATACCCCTGTAT-GGTAAAATGACCGT
* *
50507820 AA-AGCCCCTGTAGGGTAAAGTGACCGT
1 AATA-CCCCTGTATGGTAAAATGACCGT
50507847 AATACCCCTGTATGGTAAAATGAC
1 AATACCCCTGTATGGTAAAATGAC
50507871 GAATATGCCC
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
26 1 0.02
27 39 0.93
28 2 0.05
ACGTcount: A:0.37, C:0.22, G:0.21, T:0.21
Consensus pattern (27 bp):
AATACCCCTGTATGGTAAAATGACCGT
Found at i:50508750 original size:25 final size:25
Alignment explanation
Indices: 50508681--50508750 Score: 95
Period size: 25 Copynumber: 2.8 Consensus size: 25
50508671 AGGAAGTGCT
* * *
50508681 AAAAGGGCTATGCCCCAGTCTAGCG
1 AAAAGGGCTTTGCCCCAGTTTAGCA
* *
50508706 AAAAGGGTTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTAGCA
50508731 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
50508751 ATTAAAAGAG
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 39 1.00
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.24
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTAGCA
Found at i:50508763 original size:24 final size:23
Alignment explanation
Indices: 50508680--50508777 Score: 79
Period size: 25 Copynumber: 4.0 Consensus size: 23
50508670 GAGGAAGTGC
*
50508680 TAAAAGGGCTATGCCCCAGTCTAGC
1 TAAAAGGGCTATGCCCCAGT-TA-T
* * *
50508705 GAAAAGGGTTTTGCCCCAGTTTAT
1 TAAAAGGGCTATGCCCCAG-TTAT
* *
50508729 CAAAAAGGGCTTTGCCCCAGTTAT
1 -TAAAAGGGCTATGCCCCAGTTAT
*
50508753 TAAAAGAGGCTAGGCCTCCAGTTAT
1 TAAAAG-GGCTATGCC-CCAGTTAT
50508778 ATGATAAAGC
Statistics
Matches: 60, Mismatches: 9, Indels: 8
0.78 0.12 0.10
Matches are distributed among these distances:
23 5 0.08
24 11 0.18
25 43 0.72
26 1 0.02
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.26
Consensus pattern (23 bp):
TAAAAGGGCTATGCCCCAGTTAT
Found at i:50509021 original size:31 final size:31
Alignment explanation
Indices: 50508970--50509052 Score: 134
Period size: 31 Copynumber: 2.7 Consensus size: 31
50508960 CGCTTACAGT
*
50508970 AAAGGCTTCGG-CTAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
50509000 AAAGGCTTTGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
50509031 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
50509053 TCGAGACTGA
Statistics
Matches: 49, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
30 15 0.31
31 34 0.69
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:50516663 original size:48 final size:49
Alignment explanation
Indices: 50516592--50516820 Score: 283
Period size: 48 Copynumber: 4.8 Consensus size: 49
50516582 TAAAGTACCA
* **
50516592 ATGCCATGTCCCCA-ACATGGTCTTACATGAATC-CACATATCATCGCCG
1 ATGCCATGT-CCCAGACATGGTCTTACATCAGGCACACATATCATCGCCG
*
50516640 ATGCCATGTCCCAAACATGGTCTTACA-CAGGCACACATATCATCGCCG
1 ATGCCATGTCCCAGACATGGTCTTACATCAGGCACACATATCATCGCCG
* ***
50516688 AT-CCTATGTCCCAGACATGGTCTTACA-CAGGCACACAAATCATCATTG
1 ATGCC-ATGTCCCAGACATGGTCTTACATCAGGCACACATATCATCGCCG
* *
50516736 ATGCCATGTCCCAGACATGGTCTTACAT-AGGCACATATATTATCGCCG
1 ATGCCATGTCCCAGACATGGTCTTACATCAGGCACACATATCATCGCCG
* *
50516784 ATGCCATGTCCCAGACATGTTCTTACAT-AGGGACACA
1 ATGCCATGTCCCAGACATGGTCTTACATCAGGCACACA
50516821 CCTCAGATGT
Statistics
Matches: 159, Mismatches: 17, Indels: 10
0.85 0.09 0.05
Matches are distributed among these distances:
47 8 0.05
48 149 0.94
49 2 0.01
ACGTcount: A:0.29, C:0.30, G:0.17, T:0.24
Consensus pattern (49 bp):
ATGCCATGTCCCAGACATGGTCTTACATCAGGCACACATATCATCGCCG
Found at i:50520574 original size:39 final size:39
Alignment explanation
Indices: 50520515--50520654 Score: 235
Period size: 39 Copynumber: 3.6 Consensus size: 39
50520505 ATTGTGATCT
* * *
50520515 GAAGCCCGAAGTCTAGCTGAAGCACATAAGTGCTAAACG
1 GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACG
50520554 GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACG
1 GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACG
*
50520593 GAAGCCCGAAGGCTAACTAAAGCACACAAGTGCTAAACG
1 GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACG
*
50520632 GAAGCCAGAAGGCTAACTGAAGC
1 GAAGCCCGAAGGCTAACTGAAGC
50520655 TCATCAGAGC
Statistics
Matches: 95, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 95 1.00
ACGTcount: A:0.39, C:0.24, G:0.26, T:0.11
Consensus pattern (39 bp):
GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACG
Found at i:50524249 original size:17 final size:16
Alignment explanation
Indices: 50524227--50524261 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
50524217 AAATCTTGCC
*
50524227 TTTTTTCATACCTAAA
1 TTTTTTTATACCTAAA
*
50524243 TTTTTTTATACCTAGA
1 TTTTTTTATACCTAAA
50524259 TTT
1 TTT
50524262 ATCAAAGCAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.26, C:0.14, G:0.03, T:0.57
Consensus pattern (16 bp):
TTTTTTTATACCTAAA
Found at i:50527298 original size:68 final size:68
Alignment explanation
Indices: 50527213--50527350 Score: 267
Period size: 68 Copynumber: 2.0 Consensus size: 68
50527203 TATTAGAGAA
*
50527213 AATGTACCTGTTGGAAGTCTAGTCGTGGGACATGTTCCAGCATAGGAACAAGTGGTAGACATGTT
1 AATGTACCTGTTAGAAGTCTAGTCGTGGGACATGTTCCAGCATAGGAACAAGTGGTAGACATGTT
50527278 TAC
66 TAC
50527281 AATGTACCTGTTAGAAGTCTAGTCGTGGGACATGTTCCAGCATAGGAACAAGTGGTAGACATGTT
1 AATGTACCTGTTAGAAGTCTAGTCGTGGGACATGTTCCAGCATAGGAACAAGTGGTAGACATGTT
50527346 TAC
66 TAC
50527349 AA
1 AA
50527351 AACCCTTATC
Statistics
Matches: 69, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
68 69 1.00
ACGTcount: A:0.30, C:0.16, G:0.27, T:0.28
Consensus pattern (68 bp):
AATGTACCTGTTAGAAGTCTAGTCGTGGGACATGTTCCAGCATAGGAACAAGTGGTAGACATGTT
TAC
Found at i:50530363 original size:21 final size:21
Alignment explanation
Indices: 50530337--50530381 Score: 81
Period size: 21 Copynumber: 2.1 Consensus size: 21
50530327 AATTTAGTAG
*
50530337 TTTGTAAATATACTATGGCTC
1 TTTGTAAATAAACTATGGCTC
50530358 TTTGTAAATAAACTATGGCTC
1 TTTGTAAATAAACTATGGCTC
50530379 TTT
1 TTT
50530382 CAAAAATATA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.29, C:0.13, G:0.13, T:0.44
Consensus pattern (21 bp):
TTTGTAAATAAACTATGGCTC
Found at i:50531261 original size:23 final size:22
Alignment explanation
Indices: 50531235--50531291 Score: 53
Period size: 21 Copynumber: 2.5 Consensus size: 22
50531225 TATGGATTGT
50531235 ATTATATTGATATGTTTTCGAAA
1 ATTATATT-ATATGTTTTCGAAA
* * *
50531258 ATTAGATTA-ATGTTTTTGAAC
1 ATTATATTATATGTTTTCGAAA
*
50531279 ATAATATTTATAT
1 ATTATA-TTATAT
50531292 AAGTTATATC
Statistics
Matches: 27, Mismatches: 5, Indels: 4
0.75 0.14 0.11
Matches are distributed among these distances:
21 14 0.52
22 4 0.15
23 9 0.33
ACGTcount: A:0.37, C:0.04, G:0.11, T:0.49
Consensus pattern (22 bp):
ATTATATTATATGTTTTCGAAA
Found at i:50535896 original size:19 final size:17
Alignment explanation
Indices: 50535859--50535901 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 17
50535849 GTGGTATTAT
* *
50535859 CATAATTCAATTCATAA
1 CATAAATCAATTCAAAA
50535876 CATCAAATCAAGTTCAAAA
1 CAT-AAATCAA-TTCAAAA
50535895 CATAAAT
1 CATAAAT
50535902 GCACAAGTAG
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
17 3 0.14
18 10 0.45
19 9 0.41
ACGTcount: A:0.51, C:0.19, G:0.02, T:0.28
Consensus pattern (17 bp):
CATAAATCAATTCAAAA
Found at i:50543493 original size:19 final size:17
Alignment explanation
Indices: 50543456--50543498 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 17
50543446 GTGGTATTAT
* *
50543456 CATAATTCAATTCATAA
1 CATAAATCAATTCAAAA
50543473 CATCAAATCAAGTTCAAAA
1 CAT-AAATCAA-TTCAAAA
50543492 CATAAAT
1 CATAAAT
50543499 GCACAAGTAG
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
17 3 0.14
18 10 0.45
19 9 0.41
ACGTcount: A:0.51, C:0.19, G:0.02, T:0.28
Consensus pattern (17 bp):
CATAAATCAATTCAAAA
Found at i:50545430 original size:15 final size:16
Alignment explanation
Indices: 50545400--50545440 Score: 50
Period size: 15 Copynumber: 2.6 Consensus size: 16
50545390 TCTTTTCTAT
50545400 CTTTCCTTTTCTTTTA
1 CTTTCCTTTTCTTTTA
50545416 -TTTCCTTTT-TATTTA
1 CTTTCCTTTTCT-TTTA
*
50545431 CTTTACTTTT
1 CTTTCCTTTT
50545441 AATAATAATA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
14 1 0.05
15 13 0.59
16 8 0.36
ACGTcount: A:0.10, C:0.20, G:0.00, T:0.71
Consensus pattern (16 bp):
CTTTCCTTTTCTTTTA
Found at i:50547593 original size:20 final size:20
Alignment explanation
Indices: 50547570--50547614 Score: 58
Period size: 19 Copynumber: 2.3 Consensus size: 20
50547560 TAAATTTGAA
50547570 ATTTGAAATTTAAT-TTTTAT
1 ATTT-AAATTTAATATTTTAT
*
50547590 ATTTTAATTTAATATTTTAT
1 ATTTAAATTTAATATTTTAT
50547610 -TTTAA
1 ATTTAA
50547615 TAAATCATTA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
19 12 0.55
20 10 0.45
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (20 bp):
ATTTAAATTTAATATTTTAT
Found at i:50547598 original size:19 final size:18
Alignment explanation
Indices: 50547576--50547615 Score: 62
Period size: 19 Copynumber: 2.2 Consensus size: 18
50547566 TGAAATTTGA
*
50547576 AATTTAATTTTTATATTTT
1 AATTTAATATTT-TATTTT
50547595 AATTTAATATTTTATTTT
1 AATTTAATATTTTATTTT
50547613 AAT
1 AAT
50547616 AAATCATTAG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 9 0.45
19 11 0.55
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (18 bp):
AATTTAATATTTTATTTT
Found at i:50547604 original size:13 final size:13
Alignment explanation
Indices: 50547578--50547616 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
50547568 AAATTTGAAA
*
50547578 TTTAATTTTTATAT
1 TTTAA-TTTAATAT
50547592 TTTAATTTAATAT
1 TTTAATTTAATAT
*
50547605 TTTATTTTAATA
1 TTTAATTTAATA
50547617 AATCATTAGT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
13 18 0.78
14 5 0.22
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (13 bp):
TTTAATTTAATAT
Found at i:50548007 original size:14 final size:14
Alignment explanation
Indices: 50547975--50548016 Score: 59
Period size: 14 Copynumber: 3.0 Consensus size: 14
50547965 GAATTAAAAT
50547975 TAATAA-AAAATAAA
1 TAATAATAAAAT-AA
*
50547989 AAATAATAAAATAA
1 TAATAATAAAATAA
50548003 TAATAATAAAATAA
1 TAATAATAAAATAA
50548017 ATATAAATTA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
14 20 0.80
15 5 0.20
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (14 bp):
TAATAATAAAATAA
Found at i:50548022 original size:11 final size:12
Alignment explanation
Indices: 50547976--50548029 Score: 51
Period size: 11 Copynumber: 4.6 Consensus size: 12
50547966 AATTAAAATT
*
50547976 AATAAAAAAT-A
1 AATAAATAATAA
50547987 AA-AAATAATAA
1 AATAAATAATAA
50547998 AATAATAATAATAA
1 AAT-A-AATAATAA
50548012 AATAAAT-ATAA
1 AATAAATAATAA
*
50548023 ATTAAAT
1 AATAAAT
50548030 TATATCAATT
Statistics
Matches: 37, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
10 6 0.16
11 15 0.41
12 3 0.08
13 2 0.05
14 11 0.30
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (12 bp):
AATAAATAATAA
Found at i:50548022 original size:14 final size:14
Alignment explanation
Indices: 50547977--50548022 Score: 51
Period size: 14 Copynumber: 3.3 Consensus size: 14
50547967 ATTAAAATTA
*
50547977 ATAA-AAAATAAAAA
1 ATAATAAAAT-AAAT
50547991 ATAATAAAAT-AAT
1 ATAATAAAATAAAT
50548004 AATAATAAAATAAAT
1 -ATAATAAAATAAAT
50548019 ATAA
1 ATAA
50548023 ATTAAATTAT
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
13 2 0.07
14 18 0.64
15 8 0.29
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (14 bp):
ATAATAAAATAAAT
Found at i:50548623 original size:16 final size:17
Alignment explanation
Indices: 50548585--50548633 Score: 57
Period size: 16 Copynumber: 3.0 Consensus size: 17
50548575 CAAGCTGGTC
50548585 CAAATTTG-ATTTTCTT
1 CAAATTTGAATTTTCTT
**
50548601 CGGATTTGAATTTT-TT
1 CAAATTTGAATTTTCTT
*
50548617 CAAATTTGAATTATCTT
1 CAAATTTGAATTTTCTT
50548634 AGACTTGAAT
Statistics
Matches: 26, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
16 19 0.73
17 7 0.27
ACGTcount: A:0.27, C:0.10, G:0.10, T:0.53
Consensus pattern (17 bp):
CAAATTTGAATTTTCTT
Found at i:50549153 original size:2 final size:2
Alignment explanation
Indices: 50549146--50549170 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
50549136 ATTCTAAATA
50549146 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
50549171 CATGCAAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:50552646 original size:42 final size:42
Alignment explanation
Indices: 50552593--50552738 Score: 148
Period size: 42 Copynumber: 3.5 Consensus size: 42
50552583 GCAGTCATGT
* * * *
50552593 TGGCACATAAGTGTATCATCTGATTTACCGAAGCAAATATAT
1 TGGCACGTAAGTGTATCATCAGATATACCGAAGCAAATATAC
* * * * * *
50552635 TGGCATGTAAGTGCATCACCAGATATACTGAAACAATTATAC
1 TGGCACGTAAGTGTATCATCAGATATACCGAAGCAAATATAC
* * * *
50552677 TGGCACATAAATGTATCATCAGATAAACCAAAGCAAATATAC
1 TGGCACGTAAGTGTATCATCAGATATACCGAAGCAAATATAC
* *
50552719 TAGCACGTAAGTGAATCATC
1 TGGCACGTAAGTGTATCATC
50552739 GACTAAACCA
Statistics
Matches: 80, Mismatches: 24, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
42 80 1.00
ACGTcount: A:0.40, C:0.18, G:0.16, T:0.26
Consensus pattern (42 bp):
TGGCACGTAAGTGTATCATCAGATATACCGAAGCAAATATAC
Found at i:50552746 original size:42 final size:42
Alignment explanation
Indices: 50552672--50552751 Score: 108
Period size: 42 Copynumber: 1.9 Consensus size: 42
50552662 CTGAAACAAT
* *
50552672 TATACTGGCACATAAATGTATCATCAGATAAACCAAAGCAAA
1 TATACTAGCACATAAATGAATCATCAGATAAACCAAAGCAAA
* *
50552714 TATACTAGCACGTAAGTGAATCATC-GACTAAACCAAAG
1 TATACTAGCACATAAATGAATCATCAGA-TAAACCAAAG
50552752 TATAAACTCG
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
41 2 0.06
42 31 0.94
ACGTcount: A:0.45, C:0.20, G:0.14, T:0.21
Consensus pattern (42 bp):
TATACTAGCACATAAATGAATCATCAGATAAACCAAAGCAAA
Found at i:50557030 original size:40 final size:40
Alignment explanation
Indices: 50556985--50557586 Score: 1028
Period size: 40 Copynumber: 15.1 Consensus size: 40
50556975 CAAGCTCAAT
* * * * *
50556985 TGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACGAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
50557025 TGCCTTCGGGTCTTAGCCCGGATATATCAACTT-GCACAAT
1 TGCCTTCGGGTCTTAGCCCGGATATATCAA-TTCGCACAAA
*
50557065 TGCCTTCGGGTCTTAGCCTGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
* * *
50557105 CGCCATCGGGTCTTAGCCCGGATATATCAGTTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
50557145 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
50557185 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
50557225 TGCCTTCGGGTCTTA-TCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
50557264 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
50557304 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
50557344 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
50557384 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
50557424 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
50557464 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
50557504 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
50557544 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
50557584 TGC
1 TGC
50557587 TGTAACAGCC
Statistics
Matches: 538, Mismatches: 21, Indels: 6
0.95 0.04 0.01
Matches are distributed among these distances:
39 40 0.07
40 497 0.92
41 1 0.00
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (40 bp):
TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
Found at i:50558874 original size:12 final size:12
Alignment explanation
Indices: 50558857--50558882 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
50558847 CATTCCGAAG
50558857 TATATATATACA
1 TATATATATACA
50558869 TATATATATACA
1 TATATATATACA
50558881 TA
1 TA
50558883 AGTATGCCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.50, C:0.08, G:0.00, T:0.42
Consensus pattern (12 bp):
TATATATATACA
Found at i:50559395 original size:27 final size:27
Alignment explanation
Indices: 50559364--50559541 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
50559354 TAAATTGTAC
50559364 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
50559391 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
50559417 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
50559445 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
50559473 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
50559500 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
50559527 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
50559542 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:50559478 original size:82 final size:81
Alignment explanation
Indices: 50559365--50559520 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
50559355 AAATTGTACA
* *
50559365 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
50559429 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
50559446 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
50559511 TGCGAGTTGA
65 TGCGAATTGA
50559521 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:50559532 original size:82 final size:81
Alignment explanation
Indices: 50559361--50559541 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
50559351 GATTAAATTG
* *
50559361 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
50559426 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
50559442 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
50559506 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
50559524 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
50559542 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:50567474 original size:27 final size:27
Alignment explanation
Indices: 50567443--50567620 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
50567433 TAAATTGTAC
50567443 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
50567470 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
50567496 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
50567524 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
50567552 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
50567579 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
50567606 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
50567621 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:50567557 original size:82 final size:81
Alignment explanation
Indices: 50567444--50567599 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
50567434 AAATTGTACA
* *
50567444 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
50567508 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
50567525 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
50567590 TGCGAGTTGA
65 TGCGAATTGA
50567600 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:50567611 original size:82 final size:81
Alignment explanation
Indices: 50567440--50567620 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
50567430 GATTAAATTG
* *
50567440 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
50567505 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
50567521 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
50567585 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
50567603 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
50567621 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:50569022 original size:40 final size:40
Alignment explanation
Indices: 50568965--50569074 Score: 193
Period size: 40 Copynumber: 2.8 Consensus size: 40
50568955 TCGGGGTGTT
*
50568965 ACAAATGCCTTCGGGTCTTATCCCGGATATATCAATTCGC
1 ACAAATGCCTTCGGGTCTTAGCCCGGATATATCAATTCGC
* *
50569005 ACAAATGCCTTCAGGTCTTAGCCCGGATATATTAATTCGC
1 ACAAATGCCTTCGGGTCTTAGCCCGGATATATCAATTCGC
50569045 ACAAATGCCTTCGGGTCTTAGCCCGGATAT
1 ACAAATGCCTTCGGGTCTTAGCCCGGATAT
50569075 CATTCAAATG
Statistics
Matches: 66, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 66 1.00
ACGTcount: A:0.25, C:0.26, G:0.19, T:0.29
Consensus pattern (40 bp):
ACAAATGCCTTCGGGTCTTAGCCCGGATATATCAATTCGC
Done.