Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 159 of 349
Found at i:51372573 original size:38 final size:38
Alignment explanation
Indices: 51372522--51372608 Score: 165
Period size: 38 Copynumber: 2.3 Consensus size: 38
51372512 ATAGACATGC
*
51372522 ATGTTCGGCCACATGAATGAGTACATTAGTTGATGTGT
1 ATGTTCGGCCACATGAATGAGTACATAAGTTGATGTGT
51372560 ATGTTCGGCCACATGAATGAGTACATAAGTTGATGTGT
1 ATGTTCGGCCACATGAATGAGTACATAAGTTGATGTGT
51372598 ATGTTCGGCCA
1 ATGTTCGGCCA
51372609 TAGGTAAGCA
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
38 48 1.00
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.32
Consensus pattern (38 bp):
ATGTTCGGCCACATGAATGAGTACATAAGTTGATGTGT
Found at i:51373298 original size:40 final size:40
Alignment explanation
Indices: 51373204--51373388 Score: 182
Period size: 40 Copynumber: 4.6 Consensus size: 40
51373194 TATTCGAATG
* *
51373204 ATATCCGGGCTAAG-TCCCGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTCGTGCTA-GTGACT
* * *
51373245 ATAACCGGACTAAGATCCGAAGGCATTCGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTCGTGCTAG-TGACT
* * * *
51373285 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
1 ATATCCGGGCTAAGATCCGAAGGCATTCGTGCTAGTGACT
* *
51373325 ATATCTGGGCTAAG-TCCCGAAGGCA-TCTGTGCTAGTGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTC-GTGCTAGTGACT
51373365 ATATCCGGGCTAAGA-CTCGAAGGC
1 ATATCCGGGCTAAGATC-CGAAGGC
51373389 CTTGTGCAAG
Statistics
Matches: 118, Mismatches: 19, Indels: 15
0.78 0.12 0.10
Matches are distributed among these distances:
39 3 0.03
40 85 0.72
41 29 0.25
42 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTCGTGCTAGTGACT
Found at i:51373379 original size:80 final size:81
Alignment explanation
Indices: 51373204--51373388 Score: 225
Period size: 80 Copynumber: 2.3 Consensus size: 81
51373194 TATTCGAATG
* * *
51373204 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGC
*
51373269 ATTCGTGCGAGTTGCT
66 ATTCGTGCGAGTTGCC
* * * *
51373285 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTA-GCGATTATATCTGGGCTAAG-TCCCGAAGG
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGAT-CCGAAGG
*
51373348 CA-TCTGTGCTAG-TGACC
65 CATTC-GTGCGAGTTG-CC
*
51373365 ATATCCGGGCTAAGACTCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
51373389 CTTGTGCAAG
Statistics
Matches: 91, Mismatches: 10, Indels: 7
0.84 0.09 0.06
Matches are distributed among these distances:
79 5 0.05
80 54 0.59
81 32 0.35
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.24
Consensus pattern (81 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGC
ATTCGTGCGAGTTGCC
Found at i:51384104 original size:16 final size:17
Alignment explanation
Indices: 51384065--51384123 Score: 68
Period size: 16 Copynumber: 3.5 Consensus size: 17
51384055 CTTGATTGGT
* *
51384065 TTTATTTGTTT-AGTCA
1 TTTATTTATTTCAGTTA
*
51384081 TTTGTTTATTTCA-TTA
1 TTTATTTATTTCAGTTA
51384097 TTTATTTATTTCAGTTA
1 TTTATTTATTTCAGTTA
51384114 TTTAATTTAT
1 TTT-ATTTAT
51384124 AATTCTCATC
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
16 23 0.64
17 7 0.19
18 6 0.17
ACGTcount: A:0.22, C:0.05, G:0.07, T:0.66
Consensus pattern (17 bp):
TTTATTTATTTCAGTTA
Found at i:51386863 original size:13 final size:12
Alignment explanation
Indices: 51386832--51386886 Score: 51
Period size: 12 Copynumber: 4.6 Consensus size: 12
51386822 TGTGAAACAG
*
51386832 AAAAGAAATTGA
1 AAAAGAAGTTGA
51386844 AAAAGAAGTTGA
1 AAAAGAAGTTGA
*
51386856 AGAAAGAAG-AGA
1 A-AAAGAAGTTGA
*
51386868 AAATG-AGTTAGA
1 AAAAGAAGTT-GA
51386880 AAAAGAA
1 AAAAGAA
51386887 ACAAAAGAAA
Statistics
Matches: 34, Mismatches: 5, Indels: 7
0.74 0.11 0.15
Matches are distributed among these distances:
10 2 0.06
11 3 0.09
12 21 0.62
13 8 0.24
ACGTcount: A:0.64, C:0.00, G:0.24, T:0.13
Consensus pattern (12 bp):
AAAAGAAGTTGA
Found at i:51391998 original size:17 final size:17
Alignment explanation
Indices: 51391976--51392011 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
51391966 TCCTTGAAAA
51391976 CTTACTGGTTGGCCTGT
1 CTTACTGGTTGGCCTGT
51391993 CTTACTGGTTGGCCTGT
1 CTTACTGGTTGGCCTGT
51392010 CT
1 CT
51392012 ATGGCTTCTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.06, C:0.25, G:0.28, T:0.42
Consensus pattern (17 bp):
CTTACTGGTTGGCCTGT
Found at i:51397293 original size:19 final size:20
Alignment explanation
Indices: 51397251--51397295 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
51397241 GAACCATTCA
*
51397251 AAATCATTAAGGATACTTTT
1 AAATCATTAAGGATACTTTG
*
51397271 AAATCGTTAAGGA-ACTTTG
1 AAATCATTAAGGATACTTTG
51397290 AAATCA
1 AAATCA
51397296 CATAAACTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
19 10 0.45
20 12 0.55
ACGTcount: A:0.42, C:0.11, G:0.13, T:0.33
Consensus pattern (20 bp):
AAATCATTAAGGATACTTTG
Found at i:51397378 original size:43 final size:43
Alignment explanation
Indices: 51397310--51397482 Score: 181
Period size: 43 Copynumber: 4.0 Consensus size: 43
51397300 AACTCATACA
* * * ** *
51397310 ATGCC-ATATCCCAGATATGGCCTTACATTTGATCACATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACATATCG
* * * *
51397352 ATGCCACTGTCCCAGACAGGGTCTTACACGAAATCAAATAAT-G
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACAT-ATCG
* *
51397395 ATGCCAATGTCCCAAACATGGTCTTACACGTAATCACA-ATACA
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACATAT-CG
* *
51397438 ATGCCAATGTCCCAGACATGGTCTTACATGTAATCACATCTCG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACATATCG
51397481 AT
1 AT
51397483 AACCTAATGT
Statistics
Matches: 106, Mismatches: 20, Indels: 9
0.79 0.15 0.07
Matches are distributed among these distances:
41 2 0.02
42 5 0.05
43 96 0.91
44 3 0.03
ACGTcount: A:0.32, C:0.27, G:0.15, T:0.26
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACATATCG
Found at i:51398198 original size:17 final size:17
Alignment explanation
Indices: 51398165--51398198 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
51398155 TTAAAGCAAC
51398165 AATCACAAAAACGTAAA
1 AATCACAAAAACGTAAA
51398182 AATCATCAAAAAC-TAAA
1 AATCA-CAAAAACGTAAA
51398199 CACAAAACAC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.65, C:0.18, G:0.03, T:0.15
Consensus pattern (17 bp):
AATCACAAAAACGTAAA
Found at i:51406095 original size:17 final size:19
Alignment explanation
Indices: 51406057--51406100 Score: 58
Period size: 18 Copynumber: 2.5 Consensus size: 19
51406047 CAACGGTTGG
*
51406057 CTAAAAAT-ATGGTTTTTA
1 CTAAAAATAAAGGTTTTTA
51406075 CTAAAAATAAAGG-TTTT-
1 CTAAAAATAAAGGTTTTTA
51406092 CTAAAAATA
1 CTAAAAATA
51406101 CGAACGGGAT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
17 9 0.38
18 12 0.50
19 3 0.12
ACGTcount: A:0.48, C:0.07, G:0.09, T:0.36
Consensus pattern (19 bp):
CTAAAAATAAAGGTTTTTA
Found at i:51410561 original size:17 final size:17
Alignment explanation
Indices: 51410539--51410572 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
51410529 GTAATTACTC
51410539 GTTCAATATTCACAACA
1 GTTCAATATTCACAACA
*
51410556 GTTCAATTTTCACAACA
1 GTTCAATATTCACAACA
51410573 ACTCAATAAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.38, C:0.24, G:0.06, T:0.32
Consensus pattern (17 bp):
GTTCAATATTCACAACA
Found at i:51410578 original size:17 final size:17
Alignment explanation
Indices: 51410541--51410580 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
51410531 AATTACTCGT
**
51410541 TCAATATTCACAACAGT
1 TCAATATTCACAACAAC
*
51410558 TCAATTTTCACAACAAC
1 TCAATATTCACAACAAC
51410575 TCAATA
1 TCAATA
51410581 ACAATTAAAA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.42, C:0.25, G:0.03, T:0.30
Consensus pattern (17 bp):
TCAATATTCACAACAAC
Found at i:51411369 original size:31 final size:31
Alignment explanation
Indices: 51411326--51411496 Score: 306
Period size: 31 Copynumber: 5.5 Consensus size: 31
51411316 TCAGTACAAT
* *
51411326 CTGGGCCAAAGCCTTTCCATAAATCATATCA
1 CTGGGCCGAAGCCTTTTCATAAATCATATCA
51411357 CTGGGCCGAAGCCTTTTCATAAATCATATCA
1 CTGGGCCGAAGCCTTTTCATAAATCATATCA
51411388 CTGGGCCGAAGCCTTTTCATAAATCATATCA
1 CTGGGCCGAAGCCTTTTCATAAATCATATCA
* *
51411419 CTGGGTCAAAGCCTTTTCATAAATCATATCA
1 CTGGGCCGAAGCCTTTTCATAAATCATATCA
51411450 CTGGGCCGAAGCCTTTTCATAAATCATATCA
1 CTGGGCCGAAGCCTTTTCATAAATCATATCA
51411481 CTGGGCCGAAGCCTTT
1 CTGGGCCGAAGCCTTT
51411497 ACTGTAAACG
Statistics
Matches: 134, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 134 1.00
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.29
Consensus pattern (31 bp):
CTGGGCCGAAGCCTTTTCATAAATCATATCA
Found at i:51411567 original size:42 final size:42
Alignment explanation
Indices: 51411520--51411695 Score: 307
Period size: 42 Copynumber: 4.2 Consensus size: 42
51411510 TGGCCCTTAG
*
51411520 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
*
51411562 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
*
51411604 GCCCATTTCAATATCACATGTAATGTCATTGAATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
*
51411646 GCCAATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
*
51411688 GCCTATTT
1 GCCCATTT
51411696 GGGGAGACTA
Statistics
Matches: 129, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 129 1.00
ACGTcount: A:0.34, C:0.19, G:0.15, T:0.32
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
Found at i:51411879 original size:25 final size:24
Alignment explanation
Indices: 51411843--51411909 Score: 82
Period size: 24 Copynumber: 2.8 Consensus size: 24
51411833 CTCTTTTAAT
*
51411843 AACTAGGG-AAAGCCCTTTCTGATA
1 AACTGGGGCAAAGCCCTTTC-GATA
* *
51411867 AACTGGGGCAAAGCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTCGATA
*
51411891 AACTGGGGCAGAGCCCTTT
1 AACTGGGGCAAAGCCCTTT
51411910 TAGCACTTCC
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
24 27 0.73
25 10 0.27
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (24 bp):
AACTGGGGCAAAGCCCTTTCGATA
Found at i:51412782 original size:27 final size:27
Alignment explanation
Indices: 51412723--51412784 Score: 72
Period size: 27 Copynumber: 2.3 Consensus size: 27
51412713 CATATTCGTT
51412723 ATTTTACCATACAAGGGTATTACGGTC
1 ATTTTACCATACAAGGGTATTACGGTC
* * *
51412750 ACTTTACCCTACAGGGGCT-TTACGGTC
1 ATTTTACCATACAAGGG-TATTACGGTC
*
51412777 TTTTTACC
1 ATTTTACC
51412785 TATTAGGGGT
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
27 28 0.97
28 1 0.03
ACGTcount: A:0.23, C:0.24, G:0.18, T:0.35
Consensus pattern (27 bp):
ATTTTACCATACAAGGGTATTACGGTC
Found at i:51412845 original size:27 final size:27
Alignment explanation
Indices: 51412816--51413051 Score: 213
Period size: 27 Copynumber: 8.7 Consensus size: 27
51412806 TTCATCTTAC
* * *
51412816 AAGGGTGTTTTGGTAAATTTACAAACC
1 AAGGGTATTTTGGTAATTTTACAAACT
** ** *
51412843 AAGGGTATTTCAGTAATTTTGTAAACC
1 AAGGGTATTTTGGTAATTTTACAAACT
* ** * *
51412870 AATGGTATTTTTATAATTTTTAGAAAGTT
1 AAGGGTATTTTGGTAA-TTTTACAAA-CT
* ** *
51412899 AAGGGTATTTTTGTAATTTTGTAAATT
1 AAGGGTATTTTGGTAATTTTACAAACT
* *
51412926 AGGGGTATTTTGGTAATTTTACAAATT
1 AAGGGTATTTTGGTAATTTTACAAACT
* * *
51412953 GAGGGTATTTCGGTAATTTCACAAAC-
1 AAGGGTATTTTGGTAATTTTACAAACT
* *
51412979 CAGTGGTATTTCGGTAATTTTACAAACT
1 AAG-GGTATTTTGGTAATTTTACAAACT
*
51413007 AGGGGTATTTTGGTAATTTTACAAACT
1 AAGGGTATTTTGGTAATTTTACAAACT
51413034 AAGGGTATTTTGGTAATT
1 AAGGGTATTTTGGTAATT
51413052 CTATCCTACA
Statistics
Matches: 172, Mismatches: 33, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
26 2 0.01
27 141 0.82
28 15 0.09
29 14 0.08
ACGTcount: A:0.31, C:0.07, G:0.20, T:0.42
Consensus pattern (27 bp):
AAGGGTATTTTGGTAATTTTACAAACT
Found at i:51413065 original size:54 final size:53
Alignment explanation
Indices: 51412928--51413084 Score: 181
Period size: 54 Copynumber: 2.9 Consensus size: 53
51412918 TGTAAATTAG
** *
51412928 GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAAC-CA
1 GGGTATTTTGGTAATTTTACAAACAG-GGGTATTTCGGTAATTTCACAAACTAA
* * *
51412981 GTGGTATTTCGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACTAA
1 G-GGTATTTTGGTAATTTTACAAAC-AGGGGTATTTCGGTAATTTCACAAACTAA
* ** *
51413036 GGGTATTTTGGTAATTCTATCCTACAGGGGTATTTCAGTAATTTCACAA
1 GGGTATTTTGGTAATTTTA-CAAACAGGGGTATTTCGGTAATTTCACAA
51413085 CCGAGGGTAA
Statistics
Matches: 87, Mismatches: 13, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
53 1 0.01
54 80 0.92
55 6 0.07
ACGTcount: A:0.29, C:0.11, G:0.20, T:0.39
Consensus pattern (53 bp):
GGGTATTTTGGTAATTTTACAAACAGGGGTATTTCGGTAATTTCACAAACTAA
Found at i:51413068 original size:81 final size:81
Alignment explanation
Indices: 51412901--51413084 Score: 219
Period size: 81 Copynumber: 2.3 Consensus size: 81
51412891 AGAAAGTTAA
** ** * * *
51412901 GGGTATTTTTGTAATTTTGTAAATTAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGG
1 GGGTATTTCAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTCGG
51412966 TAATTTCACAAACCAG
66 TAATTTCACAAACCAG
* * *
51412982 TGGTATTTCGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTGG
1 GGGTATTTCAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTCGG
**
51413047 TAA-TTCTATCCTA-CAG
66 TAATTTC-A-CAAACCAG
*
51413063 GGGTATTTCAGTAATTTCACAA
1 GGGTATTTCAGTAATTTTACAA
51413085 CCGAGGGTAA
Statistics
Matches: 87, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
80 3 0.03
81 82 0.94
82 2 0.02
ACGTcount: A:0.29, C:0.10, G:0.21, T:0.41
Consensus pattern (81 bp):
GGGTATTTCAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTCGG
TAATTTCACAAACCAG
Found at i:51413091 original size:27 final size:26
Alignment explanation
Indices: 51412926--51413084 Score: 140
Period size: 27 Copynumber: 5.9 Consensus size: 26
51412916 TTTGTAAATT
* * *
51412926 AGGGGTATTTTGGTAATTTTACAAAT
1 AGGGGTATTTCGGTAATTTCACAAAC
*
51412952 TGAGGGTATTTCGGTAATTTCACAAACC
1 AG-GGGTATTTCGGTAATTTCACAAA-C
* *
51412980 AGTGGTATTTCGGTAATTTTACAAAC
1 AGGGGTATTTCGGTAATTTCACAAAC
* *
51413006 TAGGGGTATTTTGGTAATTTTACAAAC
1 -AGGGGTATTTCGGTAATTTCACAAAC
* * **
51413033 TAAGGGTATTTTGGTAA-TTCTATCCTAC
1 -AGGGGTATTTCGGTAATTTC-A-CAAAC
*
51413061 AGGGGTATTTCAGTAATTTCACAA
1 AGGGGTATTTCGGTAATTTCACAA
51413085 CCGAGGGTAA
Statistics
Matches: 109, Mismatches: 18, Indels: 12
0.78 0.13 0.09
Matches are distributed among these distances:
26 5 0.05
27 97 0.89
28 7 0.06
ACGTcount: A:0.30, C:0.11, G:0.21, T:0.38
Consensus pattern (26 bp):
AGGGGTATTTCGGTAATTTCACAAAC
Found at i:51413117 original size:27 final size:27
Alignment explanation
Indices: 51413086--51413236 Score: 203
Period size: 27 Copynumber: 5.6 Consensus size: 27
51413076 ATTTCACAAC
*
51413086 CGAGGGTAAAACGGTAATTTTGTAAAT
1 CGAGGGTAAAATGGTAATTTTGTAAAT
*
51413113 TGAGGGTAAAATGGTAATTTTGTAAAT
1 CGAGGGTAAAATGGTAATTTTGTAAAT
*
51413140 CGAGGGTAAAATGGTAATTTTATAAAT
1 CGAGGGTAAAATGGTAATTTTGTAAAT
**
51413167 TAAGGGTAAAATGGTAATTTTGTAAAT
1 CGAGGGTAAAATGGTAATTTTGTAAAT
* * * * *
51413194 CGAGGGTGAAACGATAATTCTATAAAT
1 CGAGGGTAAAATGGTAATTTTGTAAAT
*
51413221 CGAGGGTTAAATGGTA
1 CGAGGGTAAAATGGTA
51413237 GTTCTACAAA
Statistics
Matches: 107, Mismatches: 17, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 107 1.00
ACGTcount: A:0.38, C:0.05, G:0.25, T:0.32
Consensus pattern (27 bp):
CGAGGGTAAAATGGTAATTTTGTAAAT
Found at i:51413199 original size:81 final size:81
Alignment explanation
Indices: 51413088--51413236 Score: 226
Period size: 81 Copynumber: 1.8 Consensus size: 81
51413078 TTCACAACCG
* * * * *
51413088 AGGGTAAAACGGTAATTTTGTAAATTGAGGGTAAAATGGTAATTTTGTAAATCGAGGGTAAAATG
1 AGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAATG
51413153 GTAATTTTATAAATTA
66 GTAATTTTATAAATTA
* * *
51413169 AGGGTAAAATGGTAATTTTGTAAATCGAGGGTGAAACGATAATTCTATAAATCGAGGGTTAAATG
1 AGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAATG
51413234 GTA
66 GTA
51413237 GTTCTACAAA
Statistics
Matches: 60, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
81 60 1.00
ACGTcount: A:0.39, C:0.04, G:0.25, T:0.32
Consensus pattern (81 bp):
AGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAATG
GTAATTTTATAAATTA
Found at i:51413241 original size:27 final size:27
Alignment explanation
Indices: 51413086--51413280 Score: 194
Period size: 27 Copynumber: 7.2 Consensus size: 27
51413076 ATTTCACAAC
* * *
51413086 CGAGGGTAAAACGGTAATTTTGTAAAT
1 CGAGGGTAAAATGGTAATTCTATAAAT
* * *
51413113 TGAGGGTAAAATGGTAATTTTGTAAAT
1 CGAGGGTAAAATGGTAATTCTATAAAT
*
51413140 CGAGGGTAAAATGGTAATTTTATAAAT
1 CGAGGGTAAAATGGTAATTCTATAAAT
** * *
51413167 TAAGGGTAAAATGGTAATTTTGTAAAT
1 CGAGGGTAAAATGGTAATTCTATAAAT
* * *
51413194 CGAGGGTGAAACGATAATTCTATAAAT
1 CGAGGGTAAAATGGTAATTCTATAAAT
* * *
51413221 CGAGGGTTAAATGGTAGTTCTACAAAT
1 CGAGGGTAAAATGGTAATTCTATAAAT
* * *
51413248 CGAAGGCT-AAATGGTAGTTCTACAAAT
1 CG-AGGGTAAAATGGTAATTCTATAAAT
51413275 CGAGGG
1 CGAGGG
51413281 AATTTCAGTA
Statistics
Matches: 146, Mismatches: 21, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
26 3 0.02
27 139 0.95
28 4 0.03
ACGTcount: A:0.37, C:0.07, G:0.25, T:0.30
Consensus pattern (27 bp):
CGAGGGTAAAATGGTAATTCTATAAAT
Found at i:51413250 original size:54 final size:54
Alignment explanation
Indices: 51413086--51413236 Score: 230
Period size: 54 Copynumber: 2.8 Consensus size: 54
51413076 ATTTCACAAC
*
51413086 CGAGGGTAAAACGGTAATTTTGTAAATTGAGGGTAAAATGGTAATTTTGTAAAT
1 CGAGGGTAAAACGGTAATTTTATAAATTGAGGGTAAAATGGTAATTTTGTAAAT
* *
51413140 CGAGGGTAAAATGGTAATTTTATAAATTAAGGGTAAAATGGTAATTTTGTAAAT
1 CGAGGGTAAAACGGTAATTTTATAAATTGAGGGTAAAATGGTAATTTTGTAAAT
* * * * *
51413194 CGAGGGTGAAACGATAATTCTATAAATCGAGGGTTAAATGGTA
1 CGAGGGTAAAACGGTAATTTTATAAATTGAGGGTAAAATGGTA
51413237 GTTCTACAAA
Statistics
Matches: 87, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
54 87 1.00
ACGTcount: A:0.38, C:0.05, G:0.25, T:0.32
Consensus pattern (54 bp):
CGAGGGTAAAACGGTAATTTTATAAATTGAGGGTAAAATGGTAATTTTGTAAAT
Found at i:51417661 original size:45 final size:45
Alignment explanation
Indices: 51417553--51417708 Score: 205
Period size: 45 Copynumber: 3.5 Consensus size: 45
51417543 CTGAATTCAT
* *
51417553 TCACCGGCATT-TCGCCTGCTAGGCTCG-AAGCCCG-ATA-TCATT
1 TCACCGGCATTATAGCCTGCTAGGCTCGAAAGCCCGAATAGT-ATC
*
51417595 TCACCAGCATTATAGCCTGCTAGGCTCGAAAGCCCGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCGAAAGCCCGAATAGTATC
* *
51417640 TCACTGGCATTATAGCCTGCTAGGCTC-AAAGGCCTGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCGAAA-GCCCGAATAGTATC
*
51417685 TCACCGACATTATAGCCTGCTAGG
1 TCACCGGCATTATAGCCTGCTAGG
51417709 GTCAAAGGCC
Statistics
Matches: 101, Mismatches: 8, Indels: 7
0.87 0.07 0.06
Matches are distributed among these distances:
42 10 0.10
43 15 0.15
44 10 0.10
45 65 0.64
46 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.21, T:0.25
Consensus pattern (45 bp):
TCACCGGCATTATAGCCTGCTAGGCTCGAAAGCCCGAATAGTATC
Found at i:51420223 original size:40 final size:39
Alignment explanation
Indices: 51420163--51420299 Score: 163
Period size: 40 Copynumber: 3.5 Consensus size: 39
51420153 CGGATGATAA
*
51420163 CCGGACTAAGATC-CGAAGGCATTTGTGCTAGTGACTATAT
1 CCGG-CTAAG-TCTCGAAGGCATTTGTGCGAGTGACTATAT
*
51420203 CCGGTCTAAGTCTCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGG-CTAAGTCTCGAAGGCATTTGTGCGAGTGACTATAT
* *
51420243 CTGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTG-CTATAT
1 C-CGGCTAAGTCTCGAAGGCATTTGTGCGAG-TGACTATAT
*
51420283 CCGGATAA-TCTCGAAGG
1 CCGGCTAAGTCTCGAAGG
51420300 TACTTGGGTT
Statistics
Matches: 85, Mismatches: 9, Indels: 8
0.83 0.09 0.08
Matches are distributed among these distances:
38 8 0.09
39 7 0.08
40 67 0.79
41 3 0.04
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.28
Consensus pattern (39 bp):
CCGGCTAAGTCTCGAAGGCATTTGTGCGAGTGACTATAT
Found at i:51428251 original size:40 final size:41
Alignment explanation
Indices: 51428191--51428310 Score: 144
Period size: 40 Copynumber: 3.0 Consensus size: 41
51428181 CGGATGATAA
*
51428191 CCGGACTAAGATC-CGAAGGCATTTGTGCT-AGTGACTATAT
1 CCGGGCTAAG-TCTCGAAGGCATTTGTGCTGAGTGACTATAT
*
51428231 CCGGGCTAAGTCTCGAAGGCATTTGTG-TGAGTTACTATAT
1 CCGGGCTAAGTCTCGAAGGCATTTGTGCTGAGTGACTATAT
*
51428271 CCGAGCTAAGT-TCCGAAGGCATTTGTGC-GAGTTG-CTATAT
1 CCGGGCTAAGTCT-CGAAGGCATTTGTGCTGAG-TGACTATAT
51428311 TCGGCAAAAT
Statistics
Matches: 71, Mismatches: 4, Indels: 10
0.84 0.05 0.12
Matches are distributed among these distances:
39 4 0.06
40 66 0.93
41 1 0.01
ACGTcount: A:0.24, C:0.19, G:0.27, T:0.30
Consensus pattern (41 bp):
CCGGGCTAAGTCTCGAAGGCATTTGTGCTGAGTGACTATAT
Found at i:51429851 original size:47 final size:47
Alignment explanation
Indices: 51429798--51429935 Score: 242
Period size: 47 Copynumber: 3.0 Consensus size: 47
51429788 TTTTCTTTAC
* *
51429798 CTAAGTAACTTATCCGGAAATAATAAGGGCAAATTTAACAAGCTTAA
1 CTAAGTAACTTATCCGGAAATATTAAGAGCAAATTTAACAAGCTTAA
*
51429845 CTAAGTAACTTATCCGGAAATATTAAGAGTAAATTTAACAAGCTTAA
1 CTAAGTAACTTATCCGGAAATATTAAGAGCAAATTTAACAAGCTTAA
51429892 CTAAGTAACTTATCCGGAAATATTAAGAGC-AATTTAACAAGCTT
1 CTAAGTAACTTATCCGGAAATATTAAGAGCAAATTTAACAAGCTT
51429936 TAAATTCAAC
Statistics
Matches: 87, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
46 14 0.16
47 73 0.84
ACGTcount: A:0.43, C:0.14, G:0.14, T:0.28
Consensus pattern (47 bp):
CTAAGTAACTTATCCGGAAATATTAAGAGCAAATTTAACAAGCTTAA
Found at i:51431611 original size:40 final size:40
Alignment explanation
Indices: 51431513--51431775 Score: 325
Period size: 40 Copynumber: 6.6 Consensus size: 40
51431503 TCCTCGTTCA
* * * * *
51431513 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
51431552 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
51431592 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
51431632 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
51431672 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
51431712 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
51431752 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
51431776 CAGCATTCAA
Statistics
Matches: 200, Mismatches: 20, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
39 37 0.19
40 155 0.77
41 8 0.04
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:51439559 original size:40 final size:40
Alignment explanation
Indices: 51439434--51439693 Score: 289
Period size: 40 Copynumber: 6.6 Consensus size: 40
51439424 TCCTCGTTCA
* * * * *
51439434 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
51439473 AATGCCTTCGGGACATAACCCGGATTTAA-CACT-GCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
51439511 AATGCCTTCGGAACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
51439551 AATGCCTTCGGGACTTAACCCGGA-TTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
51439590 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
51439630 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
51439670 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
51439694 CAGCATTCAA
Statistics
Matches: 192, Mismatches: 22, Indels: 13
0.85 0.10 0.06
Matches are distributed among these distances:
37 3 0.02
38 30 0.16
39 71 0.37
40 80 0.42
41 8 0.04
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:51439610 original size:79 final size:77
Alignment explanation
Indices: 51439434--51439693 Score: 292
Period size: 79 Copynumber: 3.3 Consensus size: 77
51439424 TCCTCGTTCA
* * * * *
51439434 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGATT
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAATGCCTTCGGGACTTAACCCGGATT
*
51439499 -TAACACTGCACG
66 ATAACTC-GCACG
* *
51439511 AATGCCTTCGGAACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC-AATGCCTTCGGGACTTAACCCGGAT
51439576 TAATAACTCGCACG
65 T-ATAACTCGCACG
* * *
51439590 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTC-GGATCTTAATCCGGA
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC-AATGCCTTCGGGA-CTTAACCCGGA
* *
51439654 TATATTCACTTAGCAC-
64 T-TA-TAAC-TCGCACG
* *
51439670 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
51439694 CAGCATTCAA
Statistics
Matches: 158, Mismatches: 18, Indels: 11
0.84 0.10 0.06
Matches are distributed among these distances:
77 33 0.21
78 28 0.18
79 61 0.39
80 31 0.20
81 5 0.03
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (77 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAATGCCTTCGGGACTTAACCCGGATT
ATAACTCGCACG
Found at i:51472725 original size:37 final size:39
Alignment explanation
Indices: 51472666--51472915 Score: 213
Period size: 37 Copynumber: 6.6 Consensus size: 39
51472656 TCCTCGTTCA
* * *
51472666 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTC-CAC-
1 AATGCCTTCGGGACTTAACCCGGATTTA-TAACTCGCACG
* *
51472704 AATGCCTTC-GGACATAACCCGGATTTAACAACT----CG
1 AATGCCTTCGGGACTTAACCCGGATTT-ATAACTCGCACG
*
51472739 -ATGCCTTCGGGACTTAACCCGGATTTAAAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTATAACTCGCACG
51472777 AATGCCTTC--GACTTAACCCGGATTTAT-ACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTATAACTCGCACG
* *
51472813 AATGCCTTCGGGACTTAA-CCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTA-TAACTCGCACG
* * * * *
51472852 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTA-TAAC-TCGCACG
* *
51472892 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
51472916 CAGCATTCAA
Statistics
Matches: 179, Mismatches: 17, Indels: 30
0.79 0.08 0.13
Matches are distributed among these distances:
34 14 0.08
35 16 0.09
36 18 0.10
37 45 0.25
38 23 0.13
39 28 0.16
40 27 0.15
41 8 0.04
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTATAACTCGCACG
Found at i:51472760 original size:72 final size:77
Alignment explanation
Indices: 51472666--51472915 Score: 248
Period size: 72 Copynumber: 3.3 Consensus size: 77
51472656 TCCTCGTTCA
* * *
51472666 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTC-CAC-AATGCCTTCGGACATAACCCGGATT
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGACATAACCCGGATT
*
51472729 TA-AC-AACTCG
66 TATACTAACACG
* * *
51472739 -ATGCCTTCGGGACTTAACCCGGATTTA-AAACTCGCACGAATGCCTTC-GACTTAACCCGGATT
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGACATAACCCGGATT
**
51472801 TATACTCGCACG
66 TATACTAACACG
* * * *
51472813 AATGCCTTCGGGACTTAA-CCGGATTTAGTATCTCGCACAAAGGCCTTCGGATCTTAATCCGGAT
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGA-CATAACCCGGAT
* *
51472877 ATATTCACTTAGCAC-
65 TTA-T-AC-TAACACG
* *
51472892 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
51472916 CAGCATTCAA
Statistics
Matches: 148, Mismatches: 17, Indels: 17
0.81 0.09 0.09
Matches are distributed among these distances:
71 5 0.03
72 43 0.29
73 11 0.07
74 12 0.08
75 33 0.22
76 2 0.01
77 13 0.09
78 1 0.01
79 18 0.12
80 10 0.07
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (77 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGACATAACCCGGATT
TATACTAACACG
Found at i:51480663 original size:40 final size:40
Alignment explanation
Indices: 51480565--51480826 Score: 316
Period size: 40 Copynumber: 6.6 Consensus size: 40
51480555 TCCTCGTTCA
* * * * *
51480565 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
51480604 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
51480644 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
51480684 AATGCCTTCGGGACTTAACCCGGA-TTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
51480723 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
51480763 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
51480803 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
51480827 CAGCATTCAA
Statistics
Matches: 198, Mismatches: 20, Indels: 9
0.87 0.09 0.04
Matches are distributed among these distances:
39 76 0.38
40 114 0.58
41 8 0.04
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:51480742 original size:119 final size:118
Alignment explanation
Indices: 51480565--51480826 Score: 321
Period size: 119 Copynumber: 2.2 Consensus size: 118
51480555 TCCTCGTTCA
* * *
51480565 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGATT
1 AATGCCTTCGGGACTTAGCCCGG-ATTAATAACTCACACAATGCCTTCGGGACATAACCCGGATT
* * * *
51480630 TAACAACTCGCACGAATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCAC
65 TAACAACTCGCACAAAGGCCTTC-GGATCTTAACCCGGATATAATAACTTAGCAC
* * *
51480683 GAATGCCTTCGGGACTTAACCCGGATTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGAT
1 -AATGCCTTCGGGACTTAGCCCGGATTAATAACTCACAC-AATGCCTTCGGGACATAACCCGGAT
** * * * *
51480748 TTAGTATCTCGCACAAAGGCCTTCGGATCTTAATCCGGATATATTCACTTAGCAC
64 TTAACAACTCGCACAAAGGCCTTCGGATCTTAACCCGGATATAATAACTTAGCAC
*
51480803 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
51480827 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
118 15 0.12
119 102 0.84
120 5 0.04
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (118 bp):
AATGCCTTCGGGACTTAGCCCGGATTAATAACTCACACAATGCCTTCGGGACATAACCCGGATTT
AACAACTCGCACAAAGGCCTTCGGATCTTAACCCGGATATAATAACTTAGCAC
Found at i:51480780 original size:79 final size:78
Alignment explanation
Indices: 51480565--51480826 Score: 321
Period size: 79 Copynumber: 3.3 Consensus size: 78
51480555 TCCTCGTTCA
* * * * *
51480565 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGATT
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAATGCCTTCGGGACTTAACCCGGA-T
*
51480630 TAACAACTCGCACG
65 TAATAACTCGCACG
*
51480644 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC-AATGCCTTCGGGACTTAACCCGGAT
51480709 TAATAACTCGCACG
65 TAATAACTCGCACG
* * *
51480723 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTC-GGATCTTAATCCGGA
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC-AATGCCTTCGGGA-CTTAACCCGGA
* * *
51480787 TATATTCACTTAGCAC-
64 T-TAATAAC-TCGCACG
* *
51480803 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
51480827 CAGCATTCAA
Statistics
Matches: 162, Mismatches: 17, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
78 3 0.02
79 104 0.64
80 50 0.31
81 5 0.03
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (78 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAATGCCTTCGGGACTTAACCCGGATT
AATAACTCGCACG
Found at i:51491766 original size:20 final size:21
Alignment explanation
Indices: 51491733--51491790 Score: 66
Period size: 20 Copynumber: 2.9 Consensus size: 21
51491723 ATAAATTATG
* * *
51491733 TACCACTCCCTTTACTTTC-T
1 TACCATTCCATTTACTTACTT
51491753 TACCATTCCATTTACTTACTT
1 TACCATTCCATTTACTTACTT
*
51491774 TA-CATTTCATTTACTTA
1 TACCATTCCATTTACTTA
51491791 ACATAAACTT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
20 30 0.91
21 3 0.09
ACGTcount: A:0.22, C:0.29, G:0.00, T:0.48
Consensus pattern (21 bp):
TACCATTCCATTTACTTACTT
Found at i:51513389 original size:22 final size:23
Alignment explanation
Indices: 51513364--51513407 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 23
51513354 TAATATTTTT
51513364 AATTTTAATTAATTTT-ATAATA
1 AATTTTAATTAATTTTGATAATA
*
51513386 AATTTTTATTAATTTTGATAAT
1 AATTTTAATTAATTTTGATAAT
51513408 TTTCGATAGA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 15 0.75
23 5 0.25
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (23 bp):
AATTTTAATTAATTTTGATAATA
Found at i:51522402 original size:46 final size:46
Alignment explanation
Indices: 51522345--51522553 Score: 188
Period size: 46 Copynumber: 4.4 Consensus size: 46
51522335 TGTGCTAGTA
*
51522345 TAAGACATGTCTGGGACATGCATCAACCATAATATGAGAGCCAGTG
1 TAAGACATGTCTGGGACATGCATCAACCTTAATATGAGAGCCAGTG
* *
51522391 TAAGACCTGTCTGGGACATGCATCAGA-CTTGAGATATTTA-AGCCAGTG
1 TAAGACATGTCTGGGACATGCATCA-ACCTT-A-ATA-TGAGAGCCAGTG
* * * * * *
51522439 TAAGACATGTCTGGGACATGCATTAGCGTTGAGATGAGAGCTAGTG
1 TAAGACATGTCTGGGACATGCATCAACCTTAATATGAGAGCCAGTG
* ** * ** * *
51522485 TAACACATGTCTGGGACATGCATCGGCCTCACGATGGACAAGCTAGTG
1 TAAGACATGTCTGGGACATGCATCAACCTTAATAT-GA-GAGCCAGTG
51522533 TAAGACCATGTCTGGGACATG
1 TAAGA-CATGTCTGGGACATG
51522554 GGGTCGGCAT
Statistics
Matches: 134, Mismatches: 20, Indels: 15
0.79 0.12 0.09
Matches are distributed among these distances:
45 2 0.01
46 63 0.47
47 4 0.03
48 48 0.36
49 17 0.13
ACGTcount: A:0.30, C:0.19, G:0.27, T:0.24
Consensus pattern (46 bp):
TAAGACATGTCTGGGACATGCATCAACCTTAATATGAGAGCCAGTG
Found at i:51522533 original size:94 final size:94
Alignment explanation
Indices: 51522338--51522553 Score: 245
Period size: 94 Copynumber: 2.3 Consensus size: 94
51522328 TGATATGTGT
* * * *
51522338 GCTAGTATAAGACATGTCTGGGACATGCATCAACCATAATATGAGAGCCAGTGTAAGACCTGTCT
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAACCATAAGATGAGAGCCAGTGTAACACATGTCT
* * ***
51522403 GGGACATGCATCAGACTTGAGATATTTAA
66 GGGACATGCATCAGACCTCAGATAGACAA
* * * ** * *
51522432 GCCAGTGTAAGACATGTCTGGGACATGCATTAGCGTTGAGATGAGAGCTAGTGTAACACATGTCT
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAACCATAAGATGAGAGCCAGTGTAACACATGTCT
* *
51522497 GGGACATGCATC-GGCCTCACGATGGACAA
66 GGGACATGCATCAGACCTCA-GATAGACAA
51522526 GCTAGTGTAAGACCATGTCTGGGACATG
1 GCTAGTGTAAGA-CATGTCTGGGACATG
51522554 GGGTCGGCAT
Statistics
Matches: 101, Mismatches: 19, Indels: 3
0.82 0.15 0.02
Matches are distributed among these distances:
93 4 0.04
94 82 0.81
95 15 0.15
ACGTcount: A:0.30, C:0.19, G:0.27, T:0.24
Consensus pattern (94 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCAACCATAAGATGAGAGCCAGTGTAACACATGTCT
GGGACATGCATCAGACCTCAGATAGACAA
Found at i:51523729 original size:21 final size:20
Alignment explanation
Indices: 51523705--51523744 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
51523695 GTCTTAGTGA
*
51523705 TCACACGGGCGTGTTGCCCTT
1 TCACACAGGCGTG-TGCCCTT
51523726 TCACACAGGCGTGTGCCCT
1 TCACACAGGCGTGTGCCCT
51523745 ATTTCAAAGG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.12, C:0.35, G:0.28, T:0.25
Consensus pattern (20 bp):
TCACACAGGCGTGTGCCCTT
Found at i:51524666 original size:26 final size:26
Alignment explanation
Indices: 51524630--51524683 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
51524620 AATATTTAGC
51524630 TTTGCTAGAAGCTAATCAAAAAGGAT
1 TTTGCTAGAAGCTAATCAAAAAGGAT
*
51524656 TTTGCTAGAAGCTAATCAAAAGGGAT
1 TTTGCTAGAAGCTAATCAAAAAGGAT
51524682 TT
1 TT
51524684 AAACCGCAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.39, C:0.11, G:0.20, T:0.30
Consensus pattern (26 bp):
TTTGCTAGAAGCTAATCAAAAAGGAT
Found at i:51528090 original size:16 final size:15
Alignment explanation
Indices: 51528062--51528096 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
51528052 TAATAACTAG
*
51528062 TTATAATTATATTTA
1 TTATAATTATATTAA
51528077 TTATAATATATATTAA
1 TTATAAT-TATATTAA
51528093 TTAT
1 TTAT
51528097 TATCAACTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 7 0.39
16 11 0.61
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (15 bp):
TTATAATTATATTAA
Found at i:51529759 original size:3 final size:3
Alignment explanation
Indices: 51529751--51529788 Score: 58
Period size: 3 Copynumber: 12.7 Consensus size: 3
51529741 CGAGGATCTC
* *
51529751 GAA GAA GAA GAA GAA GAA GAA AAA GAA AAA GAA GAA GA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GA
51529789 TCCCATAGAG
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:51532673 original size:20 final size:22
Alignment explanation
Indices: 51532636--51532676 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 22
51532626 TCATTTCAGT
51532636 ATATATAAGTCACATTTAATTA
1 ATATATAAGTCACATTTAATTA
*
51532658 ATAT-TAAGT-ACGTTTAATT
1 ATATATAAGTCACATTTAATT
51532677 GCTTATAAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 9 0.50
21 5 0.28
22 4 0.22
ACGTcount: A:0.41, C:0.07, G:0.07, T:0.44
Consensus pattern (22 bp):
ATATATAAGTCACATTTAATTA
Found at i:51535837 original size:26 final size:26
Alignment explanation
Indices: 51535790--51535839 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
51535780 ATGAAAATTC
* *
51535790 CTTCTGAAATTAAACAGCCACATATA
1 CTTCTGAAAATAAACAGACACATATA
* *
51535816 CTTCTGAAAATAAATATACACATA
1 CTTCTGAAAATAAACAGACACATA
51535840 GAATGCCCAA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.46, C:0.20, G:0.06, T:0.28
Consensus pattern (26 bp):
CTTCTGAAAATAAACAGACACATATA
Found at i:51542139 original size:10 final size:10
Alignment explanation
Indices: 51542124--51542161 Score: 58
Period size: 10 Copynumber: 3.6 Consensus size: 10
51542114 TAACATGTTG
51542124 AATTTTAATT
1 AATTTTAATT
51542134 AATTTTATAATT
1 AA-TTT-TAATT
51542146 AATTTTAATT
1 AATTTTAATT
51542156 AATTTT
1 AATTTT
51542162 GATCATTCAT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
10 13 0.50
11 6 0.23
12 7 0.27
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (10 bp):
AATTTTAATT
Found at i:51542146 original size:12 final size:11
Alignment explanation
Indices: 51542126--51542161 Score: 56
Period size: 11 Copynumber: 3.3 Consensus size: 11
51542116 ACATGTTGAA
51542126 TTTTAATTAAT
1 TTTTAATTAAT
51542137 TTTATAATTAA-
1 TTT-TAATTAAT
51542148 TTTTAATTAAT
1 TTTTAATTAAT
51542159 TTT
1 TTT
51542162 GATCATTCAT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
10 7 0.30
11 9 0.39
12 7 0.30
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (11 bp):
TTTTAATTAAT
Found at i:51550330 original size:43 final size:43
Alignment explanation
Indices: 51550282--51550447 Score: 183
Period size: 43 Copynumber: 3.9 Consensus size: 43
51550272 ATTATTGAGA
*
51550282 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTAT
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT
** * * *
51550325 TGTGATTATGTGTAAGACCATGCCTGGGACATTAGCATCGTTT
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT
* * * *
51550368 TATGATTTCGTGTAAGACCATTTCTGGGACATTGGCATCG-AT
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT
* * * *
51550410 ATGTGATAACATGTAAAACCATATCTGGGATA-TGGCAT
1 -TGTGATTACATGTAAGACCATGTCTGGGACATTGGCAT
51550448 TGTACGAGCT
Statistics
Matches: 102, Mismatches: 20, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
42 7 0.07
43 95 0.93
ACGTcount: A:0.27, C:0.15, G:0.24, T:0.34
Consensus pattern (43 bp):
TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT
Found at i:51558982 original size:27 final size:26
Alignment explanation
Indices: 51558952--51559018 Score: 80
Period size: 27 Copynumber: 2.5 Consensus size: 26
51558942 AACAATAGTC
51558952 TTACCATATAAGGGCAAAATAGTCATT
1 TTACCA-ATAAGGGCAAAATAGTCATT
* * *
51558979 TTACTACGTAAGGACAAAATAGTCATT
1 TTACCA-ATAAGGGCAAAATAGTCATT
*
51559006 TTATCAATAAGGG
1 TTACCAATAAGGG
51559019 GTCCAGGCAC
Statistics
Matches: 32, Mismatches: 8, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
26 5 0.16
27 27 0.84
ACGTcount: A:0.40, C:0.13, G:0.16, T:0.30
Consensus pattern (26 bp):
TTACCAATAAGGGCAAAATAGTCATT
Found at i:51565719 original size:27 final size:25
Alignment explanation
Indices: 51565658--51565725 Score: 73
Period size: 26 Copynumber: 2.6 Consensus size: 25
51565648 AATACTTTAG
*
51565658 TTTACTAAAATTACTGAAATACCCCCA
1 TTTA-TAAAATTAC-CAAATACCCCCA
* *
51565685 ATTGTAAAATTACCAAAGTACCCCCGA
1 TTTATAAAATTACCAAA-TACCCCC-A
51565712 TTTATAAAATTACC
1 TTTATAAAATTACC
51565726 GAAAAATCGT
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
25 3 0.09
26 16 0.47
27 15 0.44
ACGTcount: A:0.41, C:0.24, G:0.06, T:0.29
Consensus pattern (25 bp):
TTTATAAAATTACCAAATACCCCCA
Found at i:51565796 original size:80 final size:80
Alignment explanation
Indices: 51565663--51565919 Score: 281
Period size: 79 Copynumber: 3.2 Consensus size: 80
51565653 TTTAGTTTAC
* * * * *
51565663 TAAAATTACTGAAATACC-CCCAATTGTAAAATTACCAAAGTACCCCCGATTTATAAAATTACCG
1 TAAAATTATTGAAATACCTTCGACTTGTAAAATTACCAAAGTACCCCCGGTTTATAAAATTACCG
51565727 AAAAATCGTCGATTG
66 AAAAATCGTCGATTG
*
51565742 TAAAATTATTGGAATACTCTT-GACTTGTAAAATTACCAAAGTACCCCCGGTTTATAAAATT-CC
1 TAAAATTATTGAAATAC-CTTCGACTTGTAAAATTACCAAAGTACCCCCGGTTTATAAAATTACC
* * *
51565805 GAAATACCGTCAATTG
65 GAAAAATCGTCGATTG
* * * * ** *
51565821 TAAAATTACTGAAATACCTTCGATTTGTAAAATTACCGAAA-TACCCTCAGTTTGCAAAATTACT
1 TAAAATTATTGAAATACCTTCGACTTGTAAAATTACC-AAAGTACCCCCGGTTTATAAAATTACC
* *
51565885 GAAATACTC-TCGATTTA
65 GAAA-AATCGTCGA-TTG
51565902 TAAAATTATTGAAATACC
1 TAAAATTATTGAAATACC
51565920 CTTATAGGGT
Statistics
Matches: 148, Mismatches: 23, Indels: 12
0.81 0.13 0.07
Matches are distributed among these distances:
78 3 0.02
79 76 0.51
80 49 0.33
81 20 0.14
ACGTcount: A:0.40, C:0.19, G:0.11, T:0.31
Consensus pattern (80 bp):
TAAAATTATTGAAATACCTTCGACTTGTAAAATTACCAAAGTACCCCCGGTTTATAAAATTACCG
AAAAATCGTCGATTG
Found at i:51565852 original size:27 final size:27
Alignment explanation
Indices: 51565663--51565921 Score: 199
Period size: 27 Copynumber: 9.7 Consensus size: 27
51565653 TTTAGTTTAC
* *
51565663 TAAAATTACTGAAATACCC-CCAATTG
1 TAAAATTACTGAAATACCCTCGATTTG
* * *
51565689 TAAAATTAC-CAAAGTACCCCCGATTTA
1 TAAAATTACTGAAA-TACCCTCGATTTG
* * * *
51565716 TAAAATTACCGAAAAATCGTCGA-TTG
1 TAAAATTACTGAAATACCCTCGATTTG
* * * * *
51565742 TAAAATTATTGGAATACTCTTGACTTG
1 TAAAATTACTGAAATACCCTCGATTTG
* * * *
51565769 TAAAATTAC-CAAAGTACCCCCGGTTTA
1 TAAAATTACTGAAA-TACCCTCGATTTG
* * *
51565796 TAAAATT-CCGAAATACCGTC-AATTG
1 TAAAATTACTGAAATACCCTCGATTTG
*
51565821 TAAAATTACTGAAATACCTTCGATTTG
1 TAAAATTACTGAAATACCCTCGATTTG
*
51565848 TAAAATTACCGAAATACCCTC-AGTTTG
1 TAAAATTACTGAAATACCCTCGA-TTTG
* * *
51565875 CAAAATTACTGAAATACTCTCGATTTA
1 TAAAATTACTGAAATACCCTCGATTTG
*
51565902 TAAAATTATTGAAATACCCT
1 TAAAATTACTGAAATACCCT
51565922 TATAGGGTAG
Statistics
Matches: 178, Mismatches: 45, Indels: 19
0.74 0.19 0.08
Matches are distributed among these distances:
25 12 0.07
26 51 0.29
27 111 0.62
28 4 0.02
ACGTcount: A:0.39, C:0.19, G:0.10, T:0.31
Consensus pattern (27 bp):
TAAAATTACTGAAATACCCTCGATTTG
Found at i:51565935 original size:27 final size:27
Alignment explanation
Indices: 51565905--51566216 Score: 399
Period size: 27 Copynumber: 11.6 Consensus size: 27
51565895 CGATTTATAA
* * *
51565905 AATTATTGAAATACCCTTATAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * * *
51565932 AATTATTAAAATACCACTATAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
51565959 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
51565986 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
51566013 AATTACTAAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
51566040 AATTATTGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
51566067 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
51566094 AATTACTAAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * *
51566121 AATTACTAAAATACCCCTATAAGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
51566148 AATTACCGAAATAACCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
51566175 AATTATTGAAATACCCCTGTATGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
51566202 AATTACCGAGATACC
1 AATTACTGAAATACC
51566217 TTTGTGGGGT
Statistics
Matches: 249, Mismatches: 36, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 249 1.00
ACGTcount: A:0.38, C:0.18, G:0.19, T:0.26
Consensus pattern (27 bp):
AATTACTGAAATACCCCTGTAGGGTAG
Found at i:51566491 original size:27 final size:26
Alignment explanation
Indices: 51566461--51566512 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
51566451 GAGGAAGCGT
* *
51566461 TCTGGTTGCTATGCCACAAATATCTGC
1 TCTGGTGGCTATACCAC-AATATCTGC
*
51566488 TCTGGTGGCTCTACCACAATATCTG
1 TCTGGTGGCTATACCACAATATCTG
51566513 TATCTAGTGA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 8 0.36
27 14 0.64
ACGTcount: A:0.21, C:0.27, G:0.19, T:0.33
Consensus pattern (26 bp):
TCTGGTGGCTATACCACAATATCTGC
Found at i:51566769 original size:98 final size:98
Alignment explanation
Indices: 51566600--51566830 Score: 345
Period size: 98 Copynumber: 2.4 Consensus size: 98
51566590 ATTATTGTAG
* * *
51566600 GCTTCGTGCTGATTATAGACCTGTTATCAATGGCTGAGTGCCGATCATGTTACCGAAGGCTGTAT
1 GCTTCGTGCCGATTATAGACCCGTTATCAATGGCTAAGTGCCGATCATGTTACCGAAGGCTGTAT
* *
51566665 GCCGTTATTGTTGGCTTCGTATCGATATTATAA
66 GCCGTTACTGTGGGCTTCGTATCGATATTATAA
* *
51566698 GCTTCGTACCGATTATAGACCCGTTATCAATGGCTAAGTGCCGATCATGTTACCGAAGGCTGTGT
1 GCTTCGTGCCGATTATAGACCCGTTATCAATGGCTAAGTGCCGATCATGTTACCGAAGGCTGTAT
* **
51566763 GCCGTTACTGTGGGCTTCGTATCGATATTCTGG
66 GCCGTTACTGTGGGCTTCGTATCGATATTATAA
* * *
51566796 GCTTCGTGTCGATTACAGACCCGTTATCGATGGCT
1 GCTTCGTGCCGATTATAGACCCGTTATCAATGGCT
51566831 TTGTGCCACG
Statistics
Matches: 119, Mismatches: 14, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
98 119 1.00
ACGTcount: A:0.20, C:0.21, G:0.26, T:0.33
Consensus pattern (98 bp):
GCTTCGTGCCGATTATAGACCCGTTATCAATGGCTAAGTGCCGATCATGTTACCGAAGGCTGTAT
GCCGTTACTGTGGGCTTCGTATCGATATTATAA
Found at i:51566905 original size:27 final size:27
Alignment explanation
Indices: 51566852--51566932 Score: 76
Period size: 27 Copynumber: 3.0 Consensus size: 27
51566842 ATTCTGTTAA
* * *
51566852 GTGGCTTTGCCACATTATTTG-ATTCTG
1 GTGGCTCTGCCACAATATCTGTA-TCTG
51566879 GTGGCTCTGCCACAATATCTGTATCTG
1 GTGGCTCTGCCACAATATCTGTATCTG
* * * *
51566906 GCGACTCTGTCACAATATCAGT-TCTG
1 GTGGCTCTGCCACAATATCTGTATCTG
51566932 G
1 G
51566933 CAGCCATGCT
Statistics
Matches: 46, Mismatches: 7, Indels: 3
0.82 0.12 0.05
Matches are distributed among these distances:
26 5 0.11
27 40 0.87
28 1 0.02
ACGTcount: A:0.19, C:0.23, G:0.22, T:0.36
Consensus pattern (27 bp):
GTGGCTCTGCCACAATATCTGTATCTG
Found at i:51569164 original size:26 final size:25
Alignment explanation
Indices: 51569120--51569378 Score: 123
Period size: 27 Copynumber: 9.7 Consensus size: 25
51569110 TTTAGTTTAT
* * *
51569120 TAAAATTACTGAAACACCCCAAGTTG
1 TAAAATTAC-CAAATACCCCGAGTTG
*
51569146 TAAAATTACCAAAGTACCCCCG-GTTTA
1 TAAAATTACCAAA-TA-CCCCGAG-TTG
* *
51569173 TAAAATTATCGAAATACCGTCGA-TTG
1 TAAAATTA-CCAAATACC-CCGAGTTG
* *
51569199 TAAAATTACTGAAATACCCTCGACTTG
1 TAAAATTAC-CAAATACCC-CGAGTTG
*
51569226 TAAAATTACCAAAGTACCCTCG-GTTTA
1 TAAAATTACCAAA-TACCC-CGAG-TTG
**
51569253 TAAAATTACCGAAATATCATCGA-TTG
1 TAAAATTACC-AAATA-CCCCGAGTTG
**
51569279 TAAAATTAATAAAATACCCTCGA-TATG
1 TAAAATT-ACCAAATACCC-CGAGT-TG
*
51569306 TAAAATTACCAAAATACCCTCGATTTG
1 TAAAATTACC-AAATACCC-CGAGTTG
* * * *
51569333 CAAAATTACTGAAATACCCTAGATTTG
1 TAAAATTAC-CAAATACCC-CGAGTTG
*
51569360 TAAAATTACTGAAATACCC
1 TAAAATTAC-CAAATACCC
51569379 TTGTAGGGTA
Statistics
Matches: 189, Mismatches: 24, Indels: 39
0.75 0.10 0.15
Matches are distributed among these distances:
25 5 0.03
26 56 0.30
27 119 0.63
28 9 0.05
ACGTcount: A:0.41, C:0.20, G:0.10, T:0.29
Consensus pattern (25 bp):
TAAAATTACCAAATACCCCGAGTTG
Found at i:51569176 original size:27 final size:26
Alignment explanation
Indices: 51569146--51569379 Score: 139
Period size: 27 Copynumber: 8.7 Consensus size: 26
51569136 CCCCAAGTTG
*
51569146 TAAAATTACCAAAGTACCCCCGGTTTA
1 TAAAATTACCAAA-TACCCTCGGTTTA
* * * *
51569173 TAAAATTATCGAAATACCGTC-GATTG
1 TAAAATTA-CCAAATACCCTCGGTTTA
* ** *
51569199 TAAAATTACTGAAATACCCTCGACTTG
1 TAAAATTAC-CAAATACCCTCGGTTTA
51569226 TAAAATTACCAAAGTACCCTCGGTTTA
1 TAAAATTACCAAA-TACCCTCGGTTTA
* * * *
51569253 TAAAATTACCGAAATATCATC-GATTG
1 TAAAATTACC-AAATACCCTCGGTTTA
** * * *
51569279 TAAAATTAATAAAATACCCTCGATATG
1 TAAAATT-ACCAAATACCCTCGGTTTA
* *
51569306 TAAAATTACCAAAATACCCTCGATTTG
1 TAAAATTACC-AAATACCCTCGGTTTA
* * * * *
51569333 CAAAATTACTGAAATACCCTAGATTTG
1 TAAAATTAC-CAAATACCCTCGGTTTA
*
51569360 TAAAATTACTGAAATACCCT
1 TAAAATTAC-CAAATACCCT
51569380 TGTAGGGTAG
Statistics
Matches: 168, Mismatches: 30, Indels: 18
0.78 0.14 0.08
Matches are distributed among these distances:
25 1 0.01
26 43 0.26
27 117 0.70
28 7 0.04
ACGTcount: A:0.41, C:0.20, G:0.10, T:0.29
Consensus pattern (26 bp):
TAAAATTACCAAATACCCTCGGTTTA
Found at i:51569238 original size:80 final size:78
Alignment explanation
Indices: 51569120--51569379 Score: 333
Period size: 80 Copynumber: 3.3 Consensus size: 78
51569110 TTTAGTTTAT
* * *
51569120 TAAAATTACTGAAACACCC-CAAGTTGTAAAATTACCAAAGTACCCCCGGTTTATAAAATTATCG
1 TAAAATTACTGAAATACCCTCGA-TTGTAAAATTACCAAAGTACCCTCGGTTTATAAAATTA-CG
*
51569184 AAATACCGTCGATTG
64 AAATACCATCGATTG
51569199 TAAAATTACTGAAATACCCTCGACTTGTAAAATTACCAAAGTACCCTCGGTTTATAAAATTACCG
1 TAAAATTACTGAAATACCCTCGA-TTGTAAAATTACCAAAGTACCCTCGGTTTATAAAATTA-CG
*
51569264 AAATATCATCGATTG
64 AAATACCATCGATTG
* * * * **
51569279 TAAAATTAATAAAATACCCTCGATATGTAAAATTACCAAAATACCCTCGATTTGCAAAATTACTG
1 TAAAATTACTGAAATACCCTCGAT-TGTAAAATTACCAAAGTACCCTCGGTTTATAAAATTAC-G
* *
51569344 AAATACCCTAGATTTG
64 AAATACCATCGA-TTG
51569360 TAAAATTACTGAAATACCCT
1 TAAAATTACTGAAATACCCT
51569380 TGTAGGGTAG
Statistics
Matches: 159, Mismatches: 18, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
79 20 0.13
80 118 0.74
81 21 0.13
ACGTcount: A:0.41, C:0.20, G:0.10, T:0.29
Consensus pattern (78 bp):
TAAAATTACTGAAATACCCTCGATTGTAAAATTACCAAAGTACCCTCGGTTTATAAAATTACGAA
ATACCATCGATTG
Found at i:51569267 original size:54 final size:52
Alignment explanation
Indices: 51569143--51569379 Score: 226
Period size: 53 Copynumber: 4.4 Consensus size: 52
51569133 ACACCCCAAG
* * * * *
51569143 TTGTAAAATTACC-AAAGTACCCCCGGTTTATAAAATTATCGAAATACCGTCGA-
1 TTGTAAAATTACCGAAA-TACCCTC-GATTGTAAAATTA-CCAAATACCCTCGAT
* *
51569196 TTGTAAAATTACTGAAATACCCTCGACTTGTAAAATTACCAAAGTACCCTCGGT
1 TTGTAAAATTACCGAAATACCCTCGA-TTGTAAAATTACCAAA-TACCCTCGAT
* * * **
51569250 TTATAAAATTACCGAAATATCATCGATTGTAAAATTAATAAAATACCCTCGAT
1 TTGTAAAATTACCGAAATACCCTCGATTGTAAAATT-ACCAAATACCCTCGAT
* * * * *
51569303 ATGTAAAATTACCAAAATACCCTCGATTTGCAAAATTACTGAAATACCCTAGAT
1 TTGTAAAATTACCGAAATACCCTCGA-TTGTAAAATTAC-CAAATACCCTCGAT
*
51569357 TTGTAAAATTACTGAAATACCCT
1 TTGTAAAATTACCGAAATACCCT
51569380 TGTAGGGTAG
Statistics
Matches: 151, Mismatches: 26, Indels: 13
0.79 0.14 0.07
Matches are distributed among these distances:
52 5 0.03
53 76 0.50
54 70 0.46
ACGTcount: A:0.40, C:0.19, G:0.11, T:0.30
Consensus pattern (52 bp):
TTGTAAAATTACCGAAATACCCTCGATTGTAAAATTACCAAATACCCTCGAT
Found at i:51569324 original size:107 final size:106
Alignment explanation
Indices: 51569184--51569375 Score: 269
Period size: 107 Copynumber: 1.8 Consensus size: 106
51569174 AAAATTATCG
* ** * *
51569184 AAATACCGTCGATTGTAAAATTACTGAAATACCCTCGACTTGTAAAATTAC-CAAAGTACCCTCG
1 AAATACCCTCGATTGTAAAATTACCAAAATACCCTCGACTTGCAAAATTACTCAAA-TACCCTAG
*
51569248 GTTTATAAAATTACCGAAATATCATCGATTGTAAAATTAATA
65 ATTTATAAAATTACCGAAATATCATCGATTGTAAAATTAATA
* *
51569290 AAATACCCTCGATATGTAAAATTACCAAAATACCCTCGATTTGCAAAATTACTGAAATACCCTAG
1 AAATACCCTCGAT-TGTAAAATTACCAAAATACCCTCGACTTGCAAAATTACTCAAATACCCTAG
* *
51569355 ATTTGTAAAATTACTGAAATA
65 ATTTATAAAATTACCGAAATA
51569376 CCCTTGTAGG
Statistics
Matches: 74, Mismatches: 10, Indels: 3
0.85 0.11 0.03
Matches are distributed among these distances:
106 12 0.16
107 59 0.80
108 3 0.04
ACGTcount: A:0.42, C:0.18, G:0.10, T:0.30
Consensus pattern (106 bp):
AAATACCCTCGATTGTAAAATTACCAAAATACCCTCGACTTGCAAAATTACTCAAATACCCTAGA
TTTATAAAATTACCGAAATATCATCGATTGTAAAATTAATA
Found at i:51569393 original size:27 final size:27
Alignment explanation
Indices: 51569363--51569719 Score: 428
Period size: 27 Copynumber: 13.2 Consensus size: 27
51569353 AGATTTGTAA
*
51569363 AATTACTGAAATACCCTTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * *
51569390 AATTACTAAAATACCGCTATAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * * *
51569417 AATTACCGAAACACCCTTGTAGGGTAA
1 AATTACTGAAATACCCCTGTAGGGTAG
*
51569444 AATTACTGAAATACCCTTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
51569471 AAATACTGAAATACCCCTATAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
51569498 AAATT-CTAAAATACCCCTATAGGGTAG
1 -AATTACTGAAATACCCCTGTAGGGTAG
* ** *
51569525 AAATACCAAAATACCCCTATAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
51569552 AATTACTGAAATACCCCTATAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
51569579 AATTATTGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
51569606 AATTACTGAAATACCCCTGTAAGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
51569633 AATTACCGAAATACCCCTGTAGGGTGG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * *
51569660 AATTACTAAAATACCCCTATAGGGTAA
1 AATTACTGAAATACCCCTGTAGGGTAG
* * * * *
51569687 AATTACCGAGATACCCTTGTGGGGTAA
1 AATTACTGAAATACCCCTGTAGGGTAG
51569714 AATTAC
1 AATTAC
51569720 CATTTTACCC
Statistics
Matches: 286, Mismatches: 42, Indels: 4
0.86 0.13 0.01
Matches are distributed among these distances:
26 3 0.01
27 280 0.98
28 3 0.01
ACGTcount: A:0.37, C:0.18, G:0.19, T:0.25
Consensus pattern (27 bp):
AATTACTGAAATACCCCTGTAGGGTAG
Found at i:51569401 original size:81 final size:80
Alignment explanation
Indices: 51569120--51569474 Score: 299
Period size: 80 Copynumber: 4.4 Consensus size: 80
51569110 TTTAGTTTAT
* * * * * * * *
51569120 TAAAATTACTGAAACACCC-C-AAGTTGTAAAATTACCAAAGTACCCCCGGTTTATAAAATTATC
1 TAAAATTACTGAAATACCCTCGTAG-GGTAAAATTACCAAAATACCCTCGATTTGTAAAATTACC
*
51569183 GAAATACCGTCGATTG
65 GAAATACCCTCGATTG
** * * *
51569199 TAAAATTACTGAAATACCCTCG-ACTTGTAAAATTACCAAAGTACCCTCGGTTTATAAAATTACC
1 TAAAATTACTGAAATACCCTCGTA-GGGTAAAATTACCAAAATACCCTCGATTTGTAAAATTACC
* *
51569263 GAAATATCATCGATTG
65 GAAATACCCTCGATTG
* * * * *
51569279 TAAAATTAATAAAATACCCTCGATA-TGTAAAATTACCAAAATACCCTCGATTTGCAAAATTACT
1 TAAAATTACTGAAATACCCTCG-TAGGGTAAAATTACCAAAATACCCTCGATTTGTAAAATTACC
*
51569343 GAAATACCCTAGATTTG
65 GAAATACCCTCGA-TTG
* * * ** *
51569360 TAAAATTACTGAAATACCCTTGTAGGGTAGAATTACTAAAATACCGCT--ATAGGGTAGAATTAC
1 TAAAATTACTGAAATACCCTCGTAGGGTAAAATTACCAAAATACC-CTCGAT-TTGTAAAATTAC
* * **
51569423 CGAAACACCCTTGTAGGG
64 CGAAATACCCTCG-ATTG
*
51569441 TAAAATTACTGAAATACCCTTGTAGGGTAGAAAT
1 TAAAATTACTGAAATACCCTCGTAGGGTA-AAAT
51569475 ACTGAAATAC
Statistics
Matches: 233, Mismatches: 32, Indels: 19
0.82 0.11 0.07
Matches are distributed among these distances:
79 18 0.08
80 121 0.52
81 87 0.37
82 7 0.03
ACGTcount: A:0.40, C:0.19, G:0.14, T:0.28
Consensus pattern (80 bp):
TAAAATTACTGAAATACCCTCGTAGGGTAAAATTACCAAAATACCCTCGATTTGTAAAATTACCG
AAATACCCTCGATTG
Found at i:51569991 original size:27 final size:26
Alignment explanation
Indices: 51569945--51570026 Score: 92
Period size: 27 Copynumber: 3.1 Consensus size: 26
51569935 GGAGGAAGCA
51569945 TTCTGGTGGCTATGCCACAAATATCTG
1 TTCTGGTGGCTATGCCAC-AATATCTG
* *
51569972 TTCTGGTGGCTCTGCTACAATATCTG
1 TTCTGGTGGCTATGCCACAATATCTG
* * * *
51569998 TATCTGGTGACTTTGTCACAATATTTG
1 T-TCTGGTGGCTATGCCACAATATCTG
51570025 TT
1 TT
51570027 GACCGATCGA
Statistics
Matches: 47, Mismatches: 7, Indels: 3
0.82 0.12 0.05
Matches are distributed among these distances:
26 10 0.21
27 37 0.79
ACGTcount: A:0.20, C:0.20, G:0.21, T:0.40
Consensus pattern (26 bp):
TTCTGGTGGCTATGCCACAATATCTG
Found at i:51570195 original size:20 final size:20
Alignment explanation
Indices: 51570148--51570195 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
51570138 CGAAGGCTGT
* *
51570148 GTGCCGTTATTGTGGGCTTC
1 GTGCCGATATTGTAGGCTTC
**
51570168 GTATCGATATTGTAGGCTTC
1 GTGCCGATATTGTAGGCTTC
51570188 GTGCCGAT
1 GTGCCGAT
51570196 TATAGACCCG
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.12, C:0.19, G:0.31, T:0.38
Consensus pattern (20 bp):
GTGCCGATATTGTAGGCTTC
Found at i:51570249 original size:98 final size:98
Alignment explanation
Indices: 51570077--51570273 Score: 324
Period size: 98 Copynumber: 2.0 Consensus size: 98
51570067 TGTGTACCGT
* * *
51570077 TATTGTAGGCTTCGTGCTGATTATAGACTCGTTATCAATGGCTGAGTTCCGGTCATGTTACCGAA
1 TATTGTAGGCTTCGTGCCGATTATAGACCCGTTATCAATGGCTGAGTTCCGATCATGTTACCGAA
*
51570142 GGCTGTGTGCCGTTATTGTGGGCTTCGTATCGA
66 GGCTATGTGCCGTTATTGTGGGCTTCGTATCGA
*
51570175 TATTGTAGGCTTCGTGCCGATTATAGACCCGTTATCAATGGTTGAGTGT-CGATCATGTTACCGA
1 TATTGTAGGCTTCGTGCCGATTATAGACCCGTTATCAATGGCTGAGT-TCCGATCATGTTACCGA
*
51570239 AGGCTATGTGCCGTTATTGTGGGCTTCGTGTCGA
65 AGGCTATGTGCCGTTATTGTGGGCTTCGTATCGA
51570273 T
1 T
51570274 TATAAACCCG
Statistics
Matches: 92, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
98 91 0.99
99 1 0.01
ACGTcount: A:0.18, C:0.18, G:0.28, T:0.36
Consensus pattern (98 bp):
TATTGTAGGCTTCGTGCCGATTATAGACCCGTTATCAATGGCTGAGTTCCGATCATGTTACCGAA
GGCTATGTGCCGTTATTGTGGGCTTCGTATCGA
Found at i:51570347 original size:27 final size:27
Alignment explanation
Indices: 51570317--51570373 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 27
51570307 ATTCTATTAA
*
51570317 GTGGCT-TTGCCACATTATCTG-ATTCTG
1 GTGGCTCTT-CCACAATATCTGTA-TCTG
51570344 GTGGCTCTTCCACAATATCTGTATCTG
1 GTGGCTCTTCCACAATATCTGTATCTG
51570371 GTG
1 GTG
51570374 ACTGTCACAA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
27 24 0.89
28 3 0.11
ACGTcount: A:0.16, C:0.23, G:0.23, T:0.39
Consensus pattern (27 bp):
GTGGCTCTTCCACAATATCTGTATCTG
Found at i:51572108 original size:43 final size:43
Alignment explanation
Indices: 51571728--51572159 Score: 490
Period size: 43 Copynumber: 10.0 Consensus size: 43
51571718 GCACGGTTAA
* * * ** *
51571728 ATCGATATGTGATTATGTATAAGACCACGTCTGGTACATTAGC
1 ATCGATATGTGATTACGTGTAAGACCACGTCTGGGATGTTGGC
* * **
51571771 ATTGATATGTGATTACGTGTAAGACCACGTTTGGGACATTGGC
1 ATCGATATGTGATTACGTGTAAGACCACGTCTGGGATGTTGGC
* * * *
51571814 ATGGATAAGTGATTATGTGTAAGACCACGTTTGGGATGTTGGC
1 ATCGATATGTGATTACGTGTAAGACCACGTCTGGGATGTTGGC
* * *
51571857 ATCGATATGTGATTACGTGTAAGACCACGTTTGAGACGTTGGC
1 ATCGATATGTGATTACGTGTAAGACCACGTCTGGGATGTTGGC
* * **
51571900 ATCGATATGTGATTACATGTAAGACCACGTCTAGGACATTGGC
1 ATCGATATGTGATTACGTGTAAGACCACGTCTGGGATGTTGGC
* *
51571943 ATCCATATGTGATTACGTGTAAGACCACGTCTGAGATGTTGGC
1 ATCGATATGTGATTACGTGTAAGACCACGTCTGGGATGTTGGC
*
51571986 ATCGATATGTGATTACGTGTAAGACCACATCTGGGATGTTGGC
1 ATCGATATGTGATTACGTGTAAGACCACGTCTGGGATGTTGGC
* * *
51572029 ATCGATATGTGATTACATGTAAGACCACGCCAGGGATGTTGGC
1 ATCGATATGTGATTACGTGTAAGACCACGTCTGGGATGTTGGC
* * * *
51572072 ATCGATATGTGATGATGTGTAAGACC-CTATTTGGGATAG-TGGC
1 ATCGATATGTGATTACGTGTAAGACCAC-GTCTGGGAT-GTTGGC
* ** * ** *
51572115 ATCGATATGTGACTATATGTAAAACCATATCTGGGACGTTGGC
1 ATCGATATGTGATTACGTGTAAGACCACGTCTGGGATGTTGGC
51572158 AT
1 AT
51572160 TGTACGATAT
Statistics
Matches: 337, Mismatches: 48, Indels: 8
0.86 0.12 0.02
Matches are distributed among these distances:
42 2 0.01
43 334 0.99
44 1 0.00
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.31
Consensus pattern (43 bp):
ATCGATATGTGATTACGTGTAAGACCACGTCTGGGATGTTGGC
Found at i:51575431 original size:27 final size:27
Alignment explanation
Indices: 51575401--51575578 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
51575391 ATATTGAGTC
* * * *
51575401 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
51575428 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
51575455 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
51575483 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
51575510 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
51575537 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
51575564 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
51575579 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:51575540 original size:82 final size:81
Alignment explanation
Indices: 51575422--51575577 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
51575412 TGCTATATAA
* *
51575422 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
51575487 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
51575504 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
51575568 CACTTAGTGC
65 CACTTAGTGC
51575578 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:51583485 original size:27 final size:27
Alignment explanation
Indices: 51583455--51583632 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
51583445 ATATTGAGTC
* * * *
51583455 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
51583482 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
51583509 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
51583537 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
51583564 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
51583591 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
51583618 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
51583633 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:51583594 original size:82 final size:81
Alignment explanation
Indices: 51583476--51583631 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
51583466 TGCTATATAA
* *
51583476 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
51583541 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
51583558 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
51583622 CACTTAGTGC
65 CACTTAGTGC
51583632 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:51587131 original size:24 final size:24
Alignment explanation
Indices: 51587104--51587160 Score: 96
Period size: 24 Copynumber: 2.4 Consensus size: 24
51587094 CCCATATCCG
51587104 TCACCAGACTAAGGTTAAGAGGTA
1 TCACCAGACTAAGGTTAAGAGGTA
*
51587128 TCACCAGACTAGGGTTAAGAGGTA
1 TCACCAGACTAAGGTTAAGAGGTA
*
51587152 TTACCAGAC
1 TCACCAGAC
51587161 AAATCAGAAC
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.35, C:0.19, G:0.25, T:0.21
Consensus pattern (24 bp):
TCACCAGACTAAGGTTAAGAGGTA
Found at i:51588603 original size:42 final size:43
Alignment explanation
Indices: 51588518--51588675 Score: 130
Period size: 43 Copynumber: 3.7 Consensus size: 43
51588508 CCAACGTCTG
* * * *
51588518 AGACGTGGTCTTACAT-GTAATCGAATATCGATGCCACTGTCCC
1 AGACATGGTCTTAC-TCGAAATCAAATATCGATGCCAATGTCCC
51588561 AGACATGGTCTTACTCGAAATCAAATAT-GATGCCAATGTCCC
1 AGACATGGTCTTACTCGAAATCAAATATCGATGCCAATGTCCC
* * * *
51588603 AGAGATGGTCTTACACGTAAATCTCAA-ATCGATTCCAATG-CTCC
1 AGACATGGTCTTACTCG-AAATC-AAATATCGATGCCAATGTC-CC
* *
51588647 AGATGA-GGTCTTACAT-GAAATCACATATC
1 AGA-CATGGTCTTAC-TCGAAATCAAATATC
51588676 AAAAATCTTA
Statistics
Matches: 96, Mismatches: 11, Indels: 16
0.78 0.09 0.13
Matches are distributed among these distances:
42 30 0.31
43 39 0.41
44 25 0.26
45 2 0.02
ACGTcount: A:0.32, C:0.23, G:0.18, T:0.27
Consensus pattern (43 bp):
AGACATGGTCTTACTCGAAATCAAATATCGATGCCAATGTCCC
Found at i:51588649 original size:44 final size:42
Alignment explanation
Indices: 51588523--51588669 Score: 138
Period size: 42 Copynumber: 3.4 Consensus size: 42
51588513 GTCTGAGACG
* * * * *
51588523 TGGTCTTACATGTAATCGAATATCGATGCCACTGTCCCAGACA
1 TGGTCTTACACGAAATCAAATA-CGATGCCAATGTCCCAGAGA
* *
51588566 TGGTCTTACTCGAAATCAAATATGATGCCAATGTCCCAGAGA
1 TGGTCTTACACGAAATCAAATACGATGCCAATGTCCCAGAGA
*
51588608 TGGTCTTACACGTAAATCTCAAAT-CGATTCCAATG-CTCCAGATGA
1 TGGTCTTACACG-AAA--TCAAATACGATGCCAATGTC-CCAGA-GA
*
51588653 -GGTCTTACATGAAATCA
1 TGGTCTTACACGAAATCA
51588670 CATATCAAAA
Statistics
Matches: 88, Mismatches: 11, Indels: 12
0.79 0.10 0.11
Matches are distributed among these distances:
41 3 0.03
42 28 0.32
43 25 0.28
44 24 0.27
45 8 0.09
ACGTcount: A:0.31, C:0.23, G:0.18, T:0.28
Consensus pattern (42 bp):
TGGTCTTACACGAAATCAAATACGATGCCAATGTCCCAGAGA
Found at i:51598784 original size:47 final size:46
Alignment explanation
Indices: 51598715--51598892 Score: 177
Period size: 47 Copynumber: 3.8 Consensus size: 46
51598705 TTTGATGCCC
* *
51598715 ATGCCATGTTCTAGACATGGTCTTACACTAGCTCATATCTCAAGT-C-G
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCATATCT---GTGCTG
*
51598762 ATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCGCATATCTGTGCTG
1 ATGCCATGTCCCAGACATGGTCTTACACTAG--CT--CATATCTGTGCTG
* *
51598812 ATGCCATGTCCCAGACACGGTCTTACACTAGCTC-TCATAATGTGGCTG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCAT-AT-CTGT-GCTG
*
51598860 ATG-CATGTCCCAGGCAT-GTCTTACACTAGCTCA
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCA
51598893 CAATAGCCCA
Statistics
Matches: 113, Mismatches: 8, Indels: 20
0.80 0.06 0.14
Matches are distributed among these distances:
45 1 0.01
46 18 0.16
47 43 0.38
48 11 0.10
49 3 0.03
50 30 0.27
51 7 0.06
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.29
Consensus pattern (46 bp):
ATGCCATGTCCCAGACATGGTCTTACACTAGCTCATATCTGTGCTG
Found at i:51598835 original size:50 final size:47
Alignment explanation
Indices: 51598761--51598891 Score: 167
Period size: 50 Copynumber: 2.7 Consensus size: 47
51598751 ATCTCAAGTC
* *
51598761 GATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCGCAT-ATCTGTGCT
1 GATGCCATGTCCCAGACA-GGTCTTACACTAGCTCT--CATAATGTG-GCT
51598811 GATGCCATGTCCCAGACACGGTCTTACACTAGCTCTCATAATGTGGCT
1 GATGCCATGTCCCAGACA-GGTCTTACACTAGCTCTCATAATGTGGCT
* *
51598859 GATG-CATGTCCCAGGCATGTCTTACACTAGCTC
1 GATGCCATGTCCCAGACAGGTCTTACACTAGCTC
51598892 ACAATAGCCC
Statistics
Matches: 75, Mismatches: 5, Indels: 6
0.87 0.06 0.07
Matches are distributed among these distances:
46 15 0.20
47 12 0.16
48 10 0.13
49 4 0.05
50 34 0.45
ACGTcount: A:0.22, C:0.30, G:0.20, T:0.28
Consensus pattern (47 bp):
GATGCCATGTCCCAGACAGGTCTTACACTAGCTCTCATAATGTGGCT
Found at i:51598985 original size:20 final size:21
Alignment explanation
Indices: 51598960--51599006 Score: 62
Period size: 22 Copynumber: 2.3 Consensus size: 21
51598950 AATTCTACTA
*
51598960 TCTCATTT-ATCATCATGCAT
1 TCTCATTTCACCATCATGCAT
51598980 TCTCATTTCCACCATCATGCAT
1 TCTCATTT-CACCATCATGCAT
51599002 T-TCAT
1 TCTCAT
51599007 GATATATCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
20 8 0.33
21 4 0.17
22 12 0.50
ACGTcount: A:0.23, C:0.30, G:0.04, T:0.43
Consensus pattern (21 bp):
TCTCATTTCACCATCATGCAT
Found at i:51606719 original size:39 final size:40
Alignment explanation
Indices: 51606542--51606719 Score: 254
Period size: 40 Copynumber: 4.5 Consensus size: 40
51606532 CGGATGGTAA
* *
51606542 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
* *
51606582 CCGGGATAAGTTCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
51606622 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
51606662 CCGGGCTAAGTCCCGAAGGCATTTGAGTGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
*
51606702 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
51606720 TACTTGGTTT
Statistics
Matches: 127, Mismatches: 9, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
39 17 0.13
40 109 0.86
41 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:51614557 original size:40 final size:40
Alignment explanation
Indices: 51614499--51614676 Score: 229
Period size: 40 Copynumber: 4.5 Consensus size: 40
51614489 CGGATGGTAA
*
51614499 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATA-T
* * *
51614539 CTGGGCTAAGTCCTGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATAT
51614579 CCGGGCTAAGTCCCGAAGGCATTTGTG-TGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGTTACTATAT
* * *
51614619 CCGGGCTAAGTTCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTA-CTATAT
*
51614659 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
51614677 TACTTGGTTT
Statistics
Matches: 122, Mismatches: 12, Indels: 9
0.85 0.08 0.06
Matches are distributed among these distances:
39 16 0.13
40 105 0.86
41 1 0.01
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATAT
Found at i:51622266 original size:20 final size:20
Alignment explanation
Indices: 51622241--51622278 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
51622231 CACTTGACAC
51622241 AGGGGC-ACACGCCCTGTGCG
1 AGGGGCAACACG-CCTGTGCG
51622261 AGGGGCAACACGCCTGTG
1 AGGGGCAACACGCCTGTG
51622279 TGACCAATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.18, C:0.32, G:0.39, T:0.11
Consensus pattern (20 bp):
AGGGGCAACACGCCTGTGCG
Found at i:51624881 original size:31 final size:31
Alignment explanation
Indices: 51624846--51624921 Score: 125
Period size: 31 Copynumber: 2.5 Consensus size: 31
51624836 TGTTACAATA
*
51624846 AACATGTACTTTTCATGTCATATTTCCAAAT
1 AACATGTACTTTTCATATCATATTTCCAAAT
*
51624877 AACATGTACTTTTCATATCATATTTCCATAT
1 AACATGTACTTTTCATATCATATTTCCAAAT
*
51624908 AACATGTACATTTC
1 AACATGTACTTTTC
51624922 CATAATCAAT
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 42 1.00
ACGTcount: A:0.33, C:0.20, G:0.05, T:0.42
Consensus pattern (31 bp):
AACATGTACTTTTCATATCATATTTCCAAAT
Found at i:51642795 original size:27 final size:27
Alignment explanation
Indices: 51642765--51642962 Score: 229
Period size: 27 Copynumber: 7.3 Consensus size: 27
51642755 TACTGAAATG
*
51642765 CCCTCGATTTGTAGAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
*** *
51642792 CCCTCGATTTATAGAATTATTGTTTCA
1 CCCTCGATTTATAGAATTACCATTTTA
* *
51642819 CCCTCGATTTACAAAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
*
51642846 CCCTCAATTTATAGAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
*
51642873 CCCTCGATTT-TCAGAATTACCGTTTTA
1 CCCTCGATTTAT-AGAATTACCATTTTA
* *
51642900 CCCTCGATTTACAAAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
* * **
51642927 CCCTC-AGTTTACAAAATTACTGTTTTA
1 CCCTCGA-TTTATAGAATTACCATTTTA
51642954 CCCTCGATT
1 CCCTCGATT
51642963 GTGAAATTAC
Statistics
Matches: 146, Mismatches: 21, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
26 2 0.01
27 143 0.98
28 1 0.01
ACGTcount: A:0.28, C:0.24, G:0.08, T:0.40
Consensus pattern (27 bp):
CCCTCGATTTATAGAATTACCATTTTA
Found at i:51642880 original size:81 final size:81
Alignment explanation
Indices: 51642765--51642962 Score: 290
Period size: 81 Copynumber: 2.4 Consensus size: 81
51642755 TACTGAAATG
* * **
51642765 CCCTCGATTTGTAGAATTACCATTTTACCCTCGATTTAT-AGAATTATTGTTTCACCCTCGATTT
1 CCCTCAATTTATAGAATTACCATTTTACCCTCGATTT-TCAGAATTACCGTTTCACCCTCGATTT
51642829 ACAAAATTACCATTTTA
65 ACAAAATTACCATTTTA
*
51642846 CCCTCAATTTATAGAATTACCATTTTACCCTCGATTTTCAGAATTACCGTTTTACCCTCGATTTA
1 CCCTCAATTTATAGAATTACCATTTTACCCTCGATTTTCAGAATTACCGTTTCACCCTCGATTTA
51642911 CAAAATTACCATTTTA
66 CAAAATTACCATTTTA
* * * **
51642927 CCCTCAGTTTACAAAATTACTGTTTTACCCTCGATT
1 CCCTCAATTTATAGAATTACCATTTTACCCTCGATT
51642963 GTGAAATTAC
Statistics
Matches: 106, Mismatches: 10, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
80 1 0.01
81 105 0.99
ACGTcount: A:0.28, C:0.24, G:0.08, T:0.40
Consensus pattern (81 bp):
CCCTCAATTTATAGAATTACCATTTTACCCTCGATTTTCAGAATTACCGTTTCACCCTCGATTTA
CAAAATTACCATTTTA
Found at i:51642984 original size:27 final size:27
Alignment explanation
Indices: 51642954--51643143 Score: 149
Period size: 27 Copynumber: 7.1 Consensus size: 27
51642944 TACTGTTTTA
* *
51642954 CCCTCGATTGTGAAATTACTAAAATAC
1 CCCTCGATTGTAAAATTACCAAAATAC
* * *
51642981 CCCTGGTTTGTAAAATTACCGAAATA-
1 CCCTCGATTGTAAAATTACCAAAATAC
**
51643007 CCCTTAATTTGTAAAATTACCAAAATAC
1 CCCTCGA-TTGTAAAATTACCAAAATAC
* *
51643035 CCCTAGTTTG-AAAATTACCAAAATAC
1 CCCTCGATTGTAAAATTACCAAAATAC
* * * * **
51643061 CACTGGTTTGTGAAATTACTGAAATA-
1 CCCTCGATTGTAAAATTACCAAAATAC
*
51643087 CCCTCAATTTGTAAAATTACCAAAATAC
1 CCCTCGA-TTGTAAAATTACCAAAATAC
51643115 CCCT-GATT-TATAAAGTTA-CAGAAATAC
1 CCCTCGATTGTA-AAA-TTACCA-AAATAC
51643142 CC
1 CC
51643144 TTGACTTTCT
Statistics
Matches: 130, Mismatches: 25, Indels: 16
0.76 0.15 0.09
Matches are distributed among these distances:
25 2 0.02
26 38 0.29
27 82 0.63
28 8 0.06
ACGTcount: A:0.39, C:0.21, G:0.10, T:0.30
Consensus pattern (27 bp):
CCCTCGATTGTAAAATTACCAAAATAC
Found at i:51643035 original size:54 final size:53
Alignment explanation
Indices: 51642952--51643143 Score: 194
Period size: 54 Copynumber: 3.6 Consensus size: 53
51642942 ATTACTGTTT
* * * *
51642952 TACCCTCGA-TTGTGAAATTACTAAAATACCCCTGGTTTGTAAAATTACCGAAA
1 TACCCT-GATTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAA
*
51643005 TACCCTTAATTTGTAAAATTACCAAAATACCCCTAGTTTG-AAAATTACCAAAA
1 TACCC-TGATTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAA
* * ** *
51643058 TACCACTGGTTTGTGAAATTACTGAAATA-CCCTCAATTTGTAAAATTACCAAAA
1 TACC-CTGATTTGTAAAATTACCAAAATACCCCT-AGTTTGTAAAATTACCAAAA
* *
51643112 TACCCCTGATTTATAAAGTTA-CAGAAATACCC
1 TA-CCCTGATTTGTAAAATTACCA-AAATACCC
51643144 TTGACTTTCT
Statistics
Matches: 114, Mismatches: 17, Indels: 14
0.79 0.12 0.10
Matches are distributed among these distances:
52 4 0.04
53 45 0.39
54 61 0.54
55 4 0.04
ACGTcount: A:0.39, C:0.21, G:0.10, T:0.30
Consensus pattern (53 bp):
TACCCTGATTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAA
Found at i:51643118 original size:80 final size:80
Alignment explanation
Indices: 51642966--51643118 Score: 261
Period size: 80 Copynumber: 1.9 Consensus size: 80
51642956 CTCGATTGTG
* * *
51642966 AAATTACTAAAATACCCCTGGTTTGTAAAATTACCGAAATACCCTTAATTTGTAAAATTACCAAA
1 AAATTACCAAAATACCACTGGTTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAA
51643031 ATACCCCTAGTTTGA
66 ATACCCCTAGTTTGA
* *
51643046 AAATTACCAAAATACCACTGGTTTGTGAAATTACTGAAATACCCTCAATTTGTAAAATTACCAAA
1 AAATTACCAAAATACCACTGGTTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAA
51643111 ATACCCCT
66 ATACCCCT
51643119 GATTTATAAA
Statistics
Matches: 68, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
80 68 1.00
ACGTcount: A:0.41, C:0.21, G:0.08, T:0.30
Consensus pattern (80 bp):
AAATTACCAAAATACCACTGGTTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAA
ATACCCCTAGTTTGA
Found at i:51643216 original size:27 final size:27
Alignment explanation
Indices: 51642984--51643209 Score: 186
Period size: 27 Copynumber: 8.3 Consensus size: 27
51642974 AAAATACCCC
51642984 TGGTTTGTAAAATTACCGAAATACCCT
1 TGGTTTGTAAAATTACCGAAATACCCT
** * *
51643011 TAATTTGTAAAATTACCAAAATACCCC
1 TGGTTTGTAAAATTACCGAAATACCCT
* *
51643038 TAGTTTG-AAAATTACCAAAATACCAC-
1 TGGTTTGTAAAATTACCGAAATACC-CT
* *
51643064 TGGTTTGTGAAATTACTGAAATACCCT
1 TGGTTTGTAAAATTACCGAAATACCCT
*** * *
51643091 CAATTTGTAAAATTACCAAAATACCCC
1 TGGTTTGTAAAATTACCGAAATACCCT
* * * *
51643118 TGATTTATAAAGTTACAGAAATACCCT
1 TGGTTTGTAAAATTACCGAAATACCCT
* * ** *
51643145 TGACTTTCTAAAACTTATGGAAATACCAT
1 TG-GTTTGTAAAA-TTACCGAAATACCCT
** *
51643174 TGGTTTACAAAATTACTGAAATACCCT
1 TGGTTTGTAAAATTACCGAAATACCCT
51643201 TGGTTTGTA
1 TGGTTTGTA
51643210 GATTTACCAA
Statistics
Matches: 157, Mismatches: 37, Indels: 10
0.77 0.18 0.05
Matches are distributed among these distances:
26 24 0.15
27 105 0.67
28 14 0.09
29 14 0.09
ACGTcount: A:0.38, C:0.18, G:0.11, T:0.33
Consensus pattern (27 bp):
TGGTTTGTAAAATTACCGAAATACCCT
Found at i:51644170 original size:25 final size:25
Alignment explanation
Indices: 51644132--51644201 Score: 113
Period size: 25 Copynumber: 2.8 Consensus size: 25
51644122 AGGAAGTGCT
* *
51644132 AAAAGGGCTATGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCA
*
51644157 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
51644182 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
51644202 ATTAAAAGAG
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 42 1.00
ACGTcount: A:0.27, C:0.26, G:0.23, T:0.24
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCA
Found at i:51644214 original size:24 final size:24
Alignment explanation
Indices: 51644131--51644214 Score: 98
Period size: 25 Copynumber: 3.4 Consensus size: 24
51644121 GAGGAAGTGC
* *
51644131 TAAAAGGGCTATGCCCCAGTTTACC
1 TAAAAGGGCTTTGCCCCAGTTTA-T
*
51644156 GAAAAGGGCTTTGCCCCAGTTTAT
1 TAAAAGGGCTTTGCCCCAGTTTAT
*
51644180 CAAAAAGGGCTTTGCCCCAG-TTAT
1 -TAAAAGGGCTTTGCCCCAGTTTAT
51644204 TAAAAGAGGCT
1 TAAAAG-GGCT
51644215 AGGCCTCCAC
Statistics
Matches: 52, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
23 5 0.10
24 8 0.15
25 39 0.75
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.25
Consensus pattern (24 bp):
TAAAAGGGCTTTGCCCCAGTTTAT
Found at i:51644470 original size:31 final size:31
Alignment explanation
Indices: 51644421--51644503 Score: 134
Period size: 31 Copynumber: 2.7 Consensus size: 31
51644411 CGCTTACAGT
*
51644421 AAAGGCTTCAG-CCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
51644451 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
51644482 AAAGGCTTCGGCCTAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
51644504 TCGAGACTGA
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
30 15 0.30
31 35 0.70
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.29
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:51644591 original size:33 final size:34
Alignment explanation
Indices: 51644531--51644599 Score: 86
Period size: 33 Copynumber: 2.1 Consensus size: 34
51644521 CTTAGGCCCA
*
51644531 TATTGCTACTGTTTAAGGGCTAAGGCCCAGACTG
1 TATTGCTACTGTATAAGGGCTAAGGCCCAGACTG
* ** *
51644565 TATTGTTACTGTAT-AGGGCTTTGGCCCAGATTG
1 TATTGCTACTGTATAAGGGCTAAGGCCCAGACTG
51644598 TA
1 TA
51644600 CTGACACTAT
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
33 18 0.60
34 12 0.40
ACGTcount: A:0.22, C:0.17, G:0.26, T:0.35
Consensus pattern (34 bp):
TATTGCTACTGTATAAGGGCTAAGGCCCAGACTG
Found at i:51646807 original size:27 final size:27
Alignment explanation
Indices: 51646777--51646974 Score: 193
Period size: 27 Copynumber: 7.3 Consensus size: 27
51646767 TACTGAAATG
**
51646777 CCCTCGATTTGTAGAATTACCATTTTA
1 CCCTCGATTTACAGAATTACCATTTTA
* *** *
51646804 CCCTCGATTTATAGAATTATTGTTTCA
1 CCCTCGATTTACAGAATTACCATTTTA
* **
51646831 CCCTCGATTTACAAAATTACTTTTTTA
1 CCCTCGATTTACAGAATTACCATTTTA
* *
51646858 CCCTCAATTTATAGAATTACCATTTTA
1 CCCTCGATTTACAGAATTACCATTTTA
*
51646885 CCCTC-AGTTTACAGAATTACCGTTTTA
1 CCCTCGA-TTTACAGAATTACCATTTTA
* *
51646912 CCATCGATTTACAAAATTACCATTTTA
1 CCCTCGATTTACAGAATTACCATTTTA
* * * *
51646939 CCCTC-AGCTTACAAAATTATCGTTTTA
1 CCCTCGA-TTTACAGAATTACCATTTTA
51646966 CCCTCGATT
1 CCCTCGATT
51646975 GTGAAATTAC
Statistics
Matches: 142, Mismatches: 25, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
26 2 0.01
27 138 0.97
28 2 0.01
ACGTcount: A:0.29, C:0.24, G:0.08, T:0.40
Consensus pattern (27 bp):
CCCTCGATTTACAGAATTACCATTTTA
Found at i:51646849 original size:54 final size:54
Alignment explanation
Indices: 51646791--51646974 Score: 226
Period size: 54 Copynumber: 3.4 Consensus size: 54
51646781 CGATTTGTAG
* *** *
51646791 AATTACCATTTTACCCTCGATTTATAGAATTATTGTTTCACCCTC-GATTTACAA
1 AATTACCGTTTTACCCTCGATTTATAGAATTACCATTTTACCCTCAG-TTTACAA
** * *
51646845 AATTACTTTTTTACCCTCAATTTATAGAATTACCATTTTACCCTCAGTTTACAG
1 AATTACCGTTTTACCCTCGATTTATAGAATTACCATTTTACCCTCAGTTTACAA
* * * *
51646899 AATTACCGTTTTACCATCGATTTACAAAATTACCATTTTACCCTCAGCTTACAA
1 AATTACCGTTTTACCCTCGATTTATAGAATTACCATTTTACCCTCAGTTTACAA
*
51646953 AATTATCGTTTTACCCTCGATT
1 AATTACCGTTTTACCCTCGATT
51646975 GTGAAATTAC
Statistics
Matches: 111, Mismatches: 18, Indels: 2
0.85 0.14 0.02
Matches are distributed among these distances:
54 110 0.99
55 1 0.01
ACGTcount: A:0.30, C:0.23, G:0.07, T:0.40
Consensus pattern (54 bp):
AATTACCGTTTTACCCTCGATTTATAGAATTACCATTTTACCCTCAGTTTACAA
Found at i:51646873 original size:81 final size:81
Alignment explanation
Indices: 51646777--51646974 Score: 245
Period size: 81 Copynumber: 2.4 Consensus size: 81
51646767 TACTGAAATG
* * * ** *
51646777 CCCTCGATTTGTAGAATTACCATTTTACCCTCGATTTATAGAATTATTGTTTCACCCTCGATTTA
1 CCCTCAATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTCACCATCGATTTA
**
51646842 CAAAATTACTTTTTTA
66 CAAAATTACCATTTTA
*
51646858 CCCTCAATTTATAGAATTACCATTTTACCCTC-AGTTTACAGAATTACCGTTTTACCATCGATTT
1 CCCTCAATTTATAGAATTACCATTTTACCCTCGA-TTTACAGAATTACCGTTTCACCATCGATTT
51646922 ACAAAATTACCATTTTA
65 ACAAAATTACCATTTTA
** * * * *
51646939 CCCTCAGCTTACAAAATTATCGTTTTACCCTCGATT
1 CCCTCAATTTATAGAATTACCATTTTACCCTCGATT
51646975 GTGAAATTAC
Statistics
Matches: 100, Mismatches: 15, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
80 1 0.01
81 98 0.98
82 1 0.01
ACGTcount: A:0.29, C:0.24, G:0.08, T:0.40
Consensus pattern (81 bp):
CCCTCAATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTCACCATCGATTTA
CAAAATTACCATTTTA
Found at i:51646996 original size:27 final size:27
Alignment explanation
Indices: 51646966--51647156 Score: 169
Period size: 27 Copynumber: 7.1 Consensus size: 27
51646956 TATCGTTTTA
* * *
51646966 CCCTCGATTGTGAAATTACTAAAATAC
1 CCCTAGATTGTAAAATTACCAAAATAC
* *
51646993 CCCTAGTTTGTAAAATTACCGAAATAC
1 CCCTAGATTGTAAAATTACCAAAATAC
*
51647020 CCTTA-ATTTGTAAAATTACCAAAATAC
1 CCCTAGA-TTGTAAAATTACCAAAATAC
*
51647047 CCCTAGTTTGTAAAATTACCAAAATAC
1 CCCTAGATTGTAAAATTACCAAAATAC
* * * * *
51647074 CACTGGTTTGTGAAATTACCGAAATA-
1 CCCTAGATTGTAAAATTACCAAAATAC
*
51647100 CCCTCA-ATTTGTAAAATTACTAAAATAC
1 CCCT-AGA-TTGTAAAATTACCAAAATAC
51647128 CCCT-GATT-TACAAAGTTA-CAGAAATAC
1 CCCTAGATTGTA-AAA-TTACCA-AAATAC
51647155 CC
1 CC
51647157 TTGACTTTCT
Statistics
Matches: 134, Mismatches: 21, Indels: 18
0.77 0.12 0.10
Matches are distributed among these distances:
25 2 0.01
26 9 0.07
27 119 0.89
28 4 0.03
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.30
Consensus pattern (27 bp):
CCCTAGATTGTAAAATTACCAAAATAC
Found at i:51647047 original size:54 final size:53
Alignment explanation
Indices: 51646973--51647129 Score: 208
Period size: 54 Copynumber: 2.9 Consensus size: 53
51646963 TTACCCTCGA
* *
51646973 TTGTGAAATTACTAAAATACCCCTAGTTTGTAAAATTACCGAAATACCCTTAAT
1 TTGTGAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCC-TAAT
* **
51647027 TTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCACTGGT
1 TTGTGAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACC-CTAAT
* * *
51647081 TTGTGAAATTACCGAAATA-CCCTCAATTTGTAAAATTACTAAAATACCC
1 TTGTGAAATTACCAAAATACCCCT-AGTTTGTAAAATTACCAAAATACCC
51647130 CTGATTTACA
Statistics
Matches: 92, Mismatches: 9, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
53 5 0.05
54 86 0.93
55 1 0.01
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (53 bp):
TTGTGAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTAAT
Found at i:51647091 original size:81 final size:81
Alignment explanation
Indices: 51646973--51647131 Score: 255
Period size: 81 Copynumber: 2.0 Consensus size: 81
51646963 TTACCCTCGA
* * * *
51646973 TTGTGAAATTACTAAAATACCCCTAGTTTGTAAAATTACCGAAATACCCTTAATTTGTAAAATTA
1 TTGTAAAATTACCAAAATACCACTAGTTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTA
51647038 CCAAAATACCCCTAGT
66 CCAAAATACCCCTAGT
* *
51647054 TTGTAAAATTACCAAAATACCACTGGTTTGTGAAATTACCGAAATACCCTCAATTTGTAAAATTA
1 TTGTAAAATTACCAAAATACCACTAGTTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTA
*
51647119 CTAAAATACCCCT
66 CCAAAATACCCCT
51647132 GATTTACAAA
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
81 71 1.00
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (81 bp):
TTGTAAAATTACCAAAATACCACTAGTTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTA
CCAAAATACCCCTAGT
Found at i:51647208 original size:27 final size:27
Alignment explanation
Indices: 51646978--51647219 Score: 114
Period size: 27 Copynumber: 8.9 Consensus size: 27
51646968 CTCGATTGTG
* * **
51646978 AAATTACTAAAATACCCCTAGTTTGTA
1 AAATTACTAAAATACCCTTGGTTTACA
** ** **
51647005 AAATTACCGAAATACCCTTAATTTGTA
1 AAATTACTAAAATACCCTTGGTTTACA
* * * **
51647032 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACTAAAATACCCTTGGTTTACA
* ***
51647059 AAATTACCAAAATACCAC-TGGTTTGTG
1 AAATTACTAAAATACC-CTTGGTTTACA
** *** **
51647086 AAATTACCGAAATACCCTCAATTTGTA
1 AAATTACTAAAATACCCTTGGTTTACA
* *
51647113 AAATTACTAAAATACCCCTGATTTACA
1 AAATTACTAAAATACCCTTGGTTTACA
* *
51647140 AAGTTAC-AGAAATACCCTTGACTTT-CTAA
1 AAATTACTA-AAATACCCTTG-GTTTAC--A
* *
51647169 AAATTA-TGGAAATACCATTGGTTTACA
1 AAATTACT-AAAATACCCTTGGTTTACA
51647196 AAATTACTAAAATACCCTTGGTTT
1 AAATTACTAAAATACCCTTGGTTT
51647220 GTAGATGTAC
Statistics
Matches: 175, Mismatches: 30, Indels: 20
0.78 0.13 0.09
Matches are distributed among these distances:
26 2 0.01
27 148 0.85
28 8 0.05
29 17 0.10
ACGTcount: A:0.40, C:0.19, G:0.09, T:0.32
Consensus pattern (27 bp):
AAATTACTAAAATACCCTTGGTTTACA
Found at i:51647303 original size:27 final size:27
Alignment explanation
Indices: 51647273--51647364 Score: 123
Period size: 27 Copynumber: 3.4 Consensus size: 27
51647263 ACCCCTATTA
*
51647273 GGTAAAAAGACCGTAAAGCCCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
* *
51647300 GGTAAAGTGACCGTATAGCCCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
* *
51647327 GGTAAAGTGACCGTAATA-CCCCTGTAT
1 GGTAAAATGACCGTAA-AGCCCCTGTAG
51647354 GGTAAAATGAC
1 GGTAAAATGAC
51647365 GAATATGCCC
Statistics
Matches: 58, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
27 57 0.98
28 1 0.02
ACGTcount: A:0.33, C:0.21, G:0.26, T:0.21
Consensus pattern (27 bp):
GGTAAAATGACCGTAAAGCCCCTGTAG
Found at i:51648210 original size:25 final size:25
Alignment explanation
Indices: 51648172--51648241 Score: 113
Period size: 25 Copynumber: 2.8 Consensus size: 25
51648162 AGGAAGTGCT
* *
51648172 AAAAGGGCTATGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCA
*
51648197 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
51648222 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
51648242 ATTAAAAGAG
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 42 1.00
ACGTcount: A:0.27, C:0.26, G:0.23, T:0.24
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCA
Found at i:51648254 original size:24 final size:24
Alignment explanation
Indices: 51648171--51648266 Score: 95
Period size: 25 Copynumber: 3.9 Consensus size: 24
51648161 GAGGAAGTGC
*
51648171 TAAAAGGGCTATGCCCCAGTTTACC
1 TAAAAGGGCTATGCCCCAGTTTA-T
* *
51648196 GAAAAGGGCTTTGCCCCAGTTTAT
1 TAAAAGGGCTATGCCCCAGTTTAT
* *
51648220 CAAAAAGGGCTTTGCCCCAG-TTAT
1 -TAAAAGGGCTATGCCCCAGTTTAT
*
51648244 TAAAAGAGGCTAGGCCTCCAGTT
1 TAAAAG-GGCTATGCC-CCAGTT
51648267 ATATGAGAAA
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
23 5 0.08
24 11 0.18
25 43 0.72
26 1 0.02
ACGTcount: A:0.28, C:0.24, G:0.23, T:0.25
Consensus pattern (24 bp):
TAAAAGGGCTATGCCCCAGTTTAT
Found at i:51648265 original size:50 final size:50
Alignment explanation
Indices: 51648172--51648266 Score: 113
Period size: 50 Copynumber: 1.9 Consensus size: 50
51648162 AGGAAGTGCT
**
51648172 AAAAGGGCTATGCCCCAGTTTACCGAAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTATGCCCCAGTTTACCGAAAAGGGCTAGGCCCCAGTTTATCA
* **
51648222 AAAAGGGCTTTGCCCCAG-TTA-TTAAAAGAGGCTAGGCCTCCAGTT
1 AAAAGGGCTATGCCCCAGTTTACCGAAAAG-GGCTAGGCC-CCAGTT
51648267 ATATGAGAAA
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
48 5 0.13
49 10 0.26
50 23 0.61
ACGTcount: A:0.28, C:0.24, G:0.23, T:0.24
Consensus pattern (50 bp):
AAAAGGGCTATGCCCCAGTTTACCGAAAAGGGCTAGGCCCCAGTTTATCA
Found at i:51649699 original size:20 final size:20
Alignment explanation
Indices: 51649664--51649720 Score: 66
Period size: 20 Copynumber: 2.9 Consensus size: 20
51649654 TGATATGTGG
51649664 GATATGATAT-ACATGA-AT
1 GATATGATATGACATGATAT
51649682 GATATGATATGCACATGATAT
1 GATATGATATG-ACATGATAT
*
51649703 G-TATGAAATGAACATGAT
1 GATATGATATG-ACATGAT
51649721 GTAATCATAA
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
18 10 0.29
20 21 0.62
21 3 0.09
ACGTcount: A:0.42, C:0.07, G:0.19, T:0.32
Consensus pattern (20 bp):
GATATGATATGACATGATAT
Found at i:51649806 original size:26 final size:26
Alignment explanation
Indices: 51649777--51649873 Score: 128
Period size: 26 Copynumber: 3.8 Consensus size: 26
51649767 TGCAAAAGGG
*
51649777 TTATGCCCCAGTTCATTGAAAATGGC
1 TTATGCCCCAGTTTATTGAAAATGGC
51649803 TTATGCCCCAGTTTATTGAAAATGGC
1 TTATGCCCCAGTTTATTGAAAATGGC
* * *
51649829 TTATGCCCTAGTTTACTGAAAAGGGC
1 TTATGCCCCAGTTTATTGAAAATGGC
*
51649855 TT-TGCCTCAG-TTATT-AAAA
1 TTATGCCCCAGTTTATTGAAAA
51649874 GAGGCTAGGC
Statistics
Matches: 64, Mismatches: 7, Indels: 3
0.86 0.09 0.04
Matches are distributed among these distances:
23 4 0.06
24 4 0.06
25 6 0.09
26 50 0.78
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.34
Consensus pattern (26 bp):
TTATGCCCCAGTTTATTGAAAATGGC
Found at i:51650456 original size:20 final size:21
Alignment explanation
Indices: 51650427--51650465 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
51650417 TTTTCTAGGA
*
51650427 TTATTTTATTT-TTAATAACT
1 TTATTCTATTTGTTAATAACT
51650447 TTATTCTATTTGTTAATAA
1 TTATTCTATTTGTTAATAA
51650466 ATAGGCTAGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 10 0.59
21 7 0.41
ACGTcount: A:0.31, C:0.05, G:0.03, T:0.62
Consensus pattern (21 bp):
TTATTCTATTTGTTAATAACT
Found at i:51652723 original size:39 final size:39
Alignment explanation
Indices: 51652679--51652953 Score: 471
Period size: 39 Copynumber: 7.1 Consensus size: 39
51652669 ATGCAAGACA
51652679 CTGGAAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTG
*
51652718 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTG
*
51652757 CTGGAAATATATCCGGGCCAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTG
*
51652796 CTGGAAATGTATCC-GGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTG
* *
51652834 CTGGAAATATATCCAGGCCAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTG
51652873 CTGGAAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTG
** *
51652912 CTGGAAATGTATCCGGGTTAAAGTCCCGCAGGCTTTGTG
1 CTGGAAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTG
51652951 CTG
1 CTG
51652954 ATAATATAAT
Statistics
Matches: 223, Mismatches: 12, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
38 36 0.16
39 187 0.84
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (39 bp):
CTGGAAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTG
Found at i:51661642 original size:20 final size:20
Alignment explanation
Indices: 51661609--51661683 Score: 102
Period size: 20 Copynumber: 3.9 Consensus size: 20
51661599 ATACATGGGA
51661609 TATGATAT--ACATGA-ATG
1 TATGATATGCACATGATATG
*
51661626 ATATGATACGCACATGATATG
1 -TATGATATGCACATGATATG
51661647 TATGATATGCACATGATATG
1 TATGATATGCACATGATATG
*
51661667 TATGAAATGCACATGAT
1 TATGATATGCACATGAT
51661684 GTAATCATAA
Statistics
Matches: 51, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
18 7 0.14
20 41 0.80
21 3 0.06
ACGTcount: A:0.39, C:0.11, G:0.19, T:0.32
Consensus pattern (20 bp):
TATGATATGCACATGATATG
Found at i:51661772 original size:26 final size:26
Alignment explanation
Indices: 51661733--51661852 Score: 163
Period size: 26 Copynumber: 4.7 Consensus size: 26
51661723 GAGGAAGTGC
*
51661733 AAAAGGGC-TATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATCG
* * *
51661758 AAAGGGGCTTATGCCCCAGTTTACCA
1 AAAAGGGCTTATGCCCCAGTTTATCG
* *
51661784 AAAAGGGCTTATGCCCTAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATCG
*
51661810 AAAAGCGCTTATGCCCCAGTTTATCG
1 AAAAGGGCTTATGCCCCAGTTTATCG
51661836 AAAAGGGCTT-TGCCCCA
1 AAAAGGGCTTATGCCCCA
51661853 ATTATTAAAA
Statistics
Matches: 81, Mismatches: 13, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
25 14 0.17
26 67 0.83
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.27
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATCG
Found at i:51661808 original size:52 final size:52
Alignment explanation
Indices: 51661733--51661852 Score: 181
Period size: 52 Copynumber: 2.3 Consensus size: 52
51661723 GAGGAAGTGC
* *
51661733 AAAAGGGC-TATGCCCCAGTTTATTGAAAGGGGCTTATGCCCCAGTTTACCA
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGCGCTTATGCCCCAGTTTACCA
* * *
51661784 AAAAGGGCTTATGCCCTAGTTTATTGAAAAGCGCTTATGCCCCAGTTTATCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGCGCTTATGCCCCAGTTTACCA
51661836 AAAAGGGCTT-TGCCCCA
1 AAAAGGGCTTATGCCCCA
51661853 ATTATTAAAA
Statistics
Matches: 62, Mismatches: 6, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
51 14 0.23
52 48 0.77
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.27
Consensus pattern (52 bp):
AAAAGGGCTTATGCCCCAGTTTATTGAAAAGCGCTTATGCCCCAGTTTACCA
Found at i:51663491 original size:29 final size:29
Alignment explanation
Indices: 51663453--51663529 Score: 118
Period size: 29 Copynumber: 2.7 Consensus size: 29
51663443 AATAATATTC
*
51663453 ATATGGCCCATTAGGCCCAAATCACCTGT
1 ATATGGCCCATTAGGCCCAAATCACATGT
*
51663482 ATATGGCCCATTAGGCCCAAATCACATTT
1 ATATGGCCCATTAGGCCCAAATCACATGT
**
51663511 ATATATCCCATTAGGCCCA
1 ATATGGCCCATTAGGCCCA
51663530 GTCACATTCA
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
29 44 1.00
ACGTcount: A:0.30, C:0.30, G:0.14, T:0.26
Consensus pattern (29 bp):
ATATGGCCCATTAGGCCCAAATCACATGT
Found at i:51663774 original size:16 final size:16
Alignment explanation
Indices: 51663753--51663789 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
51663743 GTAGCCAAAC
51663753 TTTCGGCTTTTCAGCA
1 TTTCGGCTTTTCAGCA
**
51663769 TTTCGGCTTTTTGGCA
1 TTTCGGCTTTTCAGCA
51663785 TTTCG
1 TTTCG
51663790 ACTTGGACCG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.08, C:0.22, G:0.22, T:0.49
Consensus pattern (16 bp):
TTTCGGCTTTTCAGCA
Found at i:51664865 original size:16 final size:17
Alignment explanation
Indices: 51664839--51664871 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
51664829 AAGTTTGAGA
51664839 TTTCAGGGATTTTTGGG
1 TTTCAGGGATTTTTGGG
51664856 TTTC-GGGATTTTTGGG
1 TTTCAGGGATTTTTGGG
51664872 GCGTTACATT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 12 0.75
17 4 0.25
ACGTcount: A:0.09, C:0.06, G:0.36, T:0.48
Consensus pattern (17 bp):
TTTCAGGGATTTTTGGG
Found at i:51670966 original size:28 final size:28
Alignment explanation
Indices: 51670905--51670969 Score: 112
Period size: 28 Copynumber: 2.3 Consensus size: 28
51670895 GAAGAATTAG
*
51670905 AAAAGAAAATAAAAATTTAAATAGTAAT
1 AAAAGTAAATAAAAATTTAAATAGTAAT
*
51670933 AAAAGTAAATAAAAATTTAAATTGTAAT
1 AAAAGTAAATAAAAATTTAAATAGTAAT
51670961 AAAAGTAAA
1 AAAAGTAAA
51670970 GTGGCTAAAG
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.66, C:0.00, G:0.08, T:0.26
Consensus pattern (28 bp):
AAAAGTAAATAAAAATTTAAATAGTAAT
Found at i:51686666 original size:17 final size:17
Alignment explanation
Indices: 51686627--51686672 Score: 67
Period size: 18 Copynumber: 2.7 Consensus size: 17
51686617 ATAAATTTTT
*
51686627 TAAAATTATTTATTAAA
1 TAAAAATATTTATTAAA
51686644 TAAAAAATATTTATTAAA
1 T-AAAAATATTTATTAAA
51686662 TAAAAAT-TTTA
1 TAAAAATATTTA
51686673 ACATGTATTT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
16 4 0.15
17 7 0.26
18 16 0.59
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (17 bp):
TAAAAATATTTATTAAA
Found at i:51686667 original size:19 final size:18
Alignment explanation
Indices: 51686628--51686667 Score: 71
Period size: 18 Copynumber: 2.2 Consensus size: 18
51686618 TAAATTTTTT
*
51686628 AAAATTATTTATTAAATA
1 AAAAATATTTATTAAATA
51686646 AAAAATATTTATTAAATA
1 AAAAATATTTATTAAATA
51686664 AAAA
1 AAAA
51686668 TTTTAACATG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (18 bp):
AAAAATATTTATTAAATA
Found at i:51690219 original size:24 final size:24
Alignment explanation
Indices: 51690187--51690234 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
51690177 CAATATCGAC
51690187 GCCTCTGTCCCAGACAAGGTCTTA
1 GCCTCTGTCCCAGACAAGGTCTTA
51690211 GCCTCTGTCCCAGACAAGGTCTTA
1 GCCTCTGTCCCAGACAAGGTCTTA
51690235 CACAAAGTCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.21, C:0.33, G:0.21, T:0.25
Consensus pattern (24 bp):
GCCTCTGTCCCAGACAAGGTCTTA
Found at i:51695295 original size:10 final size:10
Alignment explanation
Indices: 51695280--51695313 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
51695270 CTAGCTCAGA
* *
51695280 CATCGGGGAT
1 CATCGGGAAC
51695290 CATCGGGAAC
1 CATCGGGAAC
51695300 CATCGGGAAC
1 CATCGGGAAC
51695310 CATC
1 CATC
51695314 ATCAAACTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.26, C:0.29, G:0.29, T:0.15
Consensus pattern (10 bp):
CATCGGGAAC
Found at i:51702160 original size:67 final size:65
Alignment explanation
Indices: 51702015--51702168 Score: 193
Period size: 67 Copynumber: 2.3 Consensus size: 65
51702005 CATCATGTGT
* * * * *
51702015 ACAAGAGAGCTACGAGACATTATGATGTAGCTAGGTCGCGTGGGTGATACTATGTGTACACCATG
1 ACAAGAGAGCTACGAG--A-TATGATGTAGCTAGGTCGCATGCGTGATACCATGAGGACACCATG
51702080 TAG
63 TAG
*
51702083 ACAAGAGAGCTACGAGATAT-ATGTAGCTAGGTCGCATGCGTGATTCCAGGTGAAGGACACCATG
1 ACAAGAGAGCTACGAGATATGATGTAGCTAGGTCGCATGCGTGATACCA--TG-AGGACACCATG
51702147 TAG
63 TAG
51702150 ACAAGAGAGCTACGAGATA
1 ACAAGAGAGCTACGAGATA
51702169 AACTGGCTAG
Statistics
Matches: 77, Mismatches: 6, Indels: 7
0.86 0.07 0.08
Matches are distributed among these distances:
64 24 0.31
65 3 0.04
66 3 0.04
67 31 0.40
68 16 0.21
ACGTcount: A:0.32, C:0.17, G:0.29, T:0.21
Consensus pattern (65 bp):
ACAAGAGAGCTACGAGATATGATGTAGCTAGGTCGCATGCGTGATACCATGAGGACACCATGTAG
Done.