Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 162 of 349
Found at i:52402000 original size:27 final size:27
Alignment explanation
Indices: 52401970--52402024 Score: 101
Period size: 27 Copynumber: 2.0 Consensus size: 27
52401960 CACAAGCGCC
*
52401970 TGTGGGCCCACACGCTCGTGTGGCCCA
1 TGTGGGCCCACACACTCGTGTGGCCCA
52401997 TGTGGGCCCACACACTCGTGTGGCCCA
1 TGTGGGCCCACACACTCGTGTGGCCCA
52402024 T
1 T
52402025 ATGACCCCAG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.13, C:0.36, G:0.31, T:0.20
Consensus pattern (27 bp):
TGTGGGCCCACACACTCGTGTGGCCCA
Found at i:52402033 original size:27 final size:27
Alignment explanation
Indices: 52401976--52402033 Score: 80
Period size: 27 Copynumber: 2.1 Consensus size: 27
52401966 CGCCTGTGGG
* * **
52401976 CCCACACGCTCGTGTGGCCCATGTGGG
1 CCCACACACTCGTGTGGCCCATATGAC
52402003 CCCACACACTCGTGTGGCCCATATGAC
1 CCCACACACTCGTGTGGCCCATATGAC
52402030 CCCA
1 CCCA
52402034 GTTAGTCCAG
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.17, C:0.41, G:0.24, T:0.17
Consensus pattern (27 bp):
CCCACACACTCGTGTGGCCCATATGAC
Found at i:52406684 original size:47 final size:47
Alignment explanation
Indices: 52406627--52406930 Score: 407
Period size: 47 Copynumber: 6.4 Consensus size: 47
52406617 ATTGATGTAC
* * *
52406627 AAGTATATATATGTGATAGGGCCGAGTGGCCAATGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
*
52406674 AAGTATATATATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
1 AAGTGTATATAT--GTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* *
52406723 ACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
1 A-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* *
52406770 ACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
1 A-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* * *
52406817 ACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGAGA
1 A-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* *
52406864 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGG
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* *
52406911 AAGTATATAAATGTGATAAG
1 AAGTGTATATATGTGATAAG
52406931 TCCCGAAGGG
Statistics
Matches: 236, Mismatches: 17, Indels: 8
0.90 0.07 0.03
Matches are distributed among these distances:
46 1 0.00
47 194 0.82
49 40 0.17
50 1 0.00
ACGTcount: A:0.34, C:0.10, G:0.30, T:0.27
Consensus pattern (47 bp):
AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
Found at i:52406808 original size:22 final size:22
Alignment explanation
Indices: 52406781--52406902 Score: 61
Period size: 22 Copynumber: 5.3 Consensus size: 22
52406771 CATGTGTATG
52406781 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* * *
52406803 TGTGATGAATG-TGAACAT-GCATATA
1 TGTGAT-AAGGCCG-A-ATGGC-CA-A
*
52406828 TGAGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* * ***
52406850 TGTGATGAATG-AGAAAGTGTATATA
1 TGTGAT-AAGGCCG-AA-TGGCCA-A
52406875 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
52406897 TGTGAT
1 TGTGAT
52406903 GGATGTGGAA
Statistics
Matches: 70, Mismatches: 18, Indels: 24
0.62 0.16 0.21
Matches are distributed among these distances:
22 21 0.30
23 17 0.24
24 17 0.24
25 15 0.21
ACGTcount: A:0.34, C:0.11, G:0.30, T:0.25
Consensus pattern (22 bp):
TGTGATAAGGCCGAATGGCCAA
Found at i:52409167 original size:25 final size:25
Alignment explanation
Indices: 52409139--52409203 Score: 71
Period size: 25 Copynumber: 2.6 Consensus size: 25
52409129 TCAATTCATA
*
52409139 TAATGGGAAGCTCAT-GTGAGCCAT
1 TAATGGGAAGCTCATAGAGAGCCAT
* *
52409163 GTAATAGGAAGCT-TTAGAGAGCCAT
1 -TAATGGGAAGCTCATAGAGAGCCAT
*
52409188 TAACGGGAAGCTCATA
1 TAATGGGAAGCTCATA
52409204 CGAGCTAATA
Statistics
Matches: 32, Mismatches: 6, Indels: 4
0.76 0.14 0.10
Matches are distributed among these distances:
24 11 0.34
25 21 0.66
ACGTcount: A:0.34, C:0.15, G:0.28, T:0.23
Consensus pattern (25 bp):
TAATGGGAAGCTCATAGAGAGCCAT
Found at i:52410777 original size:24 final size:22
Alignment explanation
Indices: 52410735--52410792 Score: 59
Period size: 24 Copynumber: 2.6 Consensus size: 22
52410725 ATTAATTTTT
52410735 TAAA-AAAA-TATAAAAATT-A
1 TAAATAAAATTATAAAAATTAA
52410754 TAGAATAAAATTATAAAATTATTAA
1 TA-AATAAAATTATAAAA--ATTAA
*
52410779 TAAATAAATTTATA
1 TAAATAAAATTATA
52410793 TATTTATATA
Statistics
Matches: 32, Mismatches: 1, Indels: 7
0.80 0.03 0.17
Matches are distributed among these distances:
19 2 0.06
20 2 0.06
21 4 0.12
22 7 0.22
24 14 0.44
25 3 0.09
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (22 bp):
TAAATAAAATTATAAAAATTAA
Found at i:52410842 original size:9 final size:9
Alignment explanation
Indices: 52410830--52410876 Score: 55
Period size: 9 Copynumber: 5.6 Consensus size: 9
52410820 TAATTTTAAA
52410830 ATTTTTTAT
1 ATTTTTTAT
52410839 A-TTTTTAT
1 ATTTTTTAT
*
52410847 ATTTTTGA-
1 ATTTTTTAT
52410855 A-TTTTTAT
1 ATTTTTTAT
*
52410863 ATTTTATAT
1 ATTTTTTAT
52410872 ATTTT
1 ATTTT
52410877 AAAATATTAA
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
7 5 0.16
8 10 0.31
9 17 0.53
ACGTcount: A:0.26, C:0.00, G:0.02, T:0.72
Consensus pattern (9 bp):
ATTTTTTAT
Found at i:52410843 original size:8 final size:8
Alignment explanation
Indices: 52410832--52410876 Score: 65
Period size: 8 Copynumber: 5.5 Consensus size: 8
52410822 ATTTTAAAAT
52410832 TTTTTATA
1 TTTTTATA
52410840 TTTTTATA
1 TTTTTATA
52410848 TTTTTGA-A
1 TTTTT-ATA
52410856 TTTTTATA
1 TTTTTATA
52410864 TTTTATATA
1 TTTT-TATA
52410873 TTTT
1 TTTT
52410877 AAAATATTAA
Statistics
Matches: 34, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
7 1 0.03
8 24 0.71
9 9 0.26
ACGTcount: A:0.24, C:0.00, G:0.02, T:0.73
Consensus pattern (8 bp):
TTTTTATA
Found at i:52410877 original size:9 final size:9
Alignment explanation
Indices: 52410787--52410877 Score: 61
Period size: 8 Copynumber: 10.4 Consensus size: 9
52410777 AATAAATAAA
52410787 TTTATATA-
1 TTTATATAT
52410795 TTTATATAT
1 TTTATATAT
*
52410804 TTT-TATGCT
1 TTTATAT-AT
*
52410813 TCTTAAATAAT
1 T-TTATAT-AT
*
52410824 TTTA-AAAT
1 TTTATATAT
*
52410832 TTTTTATAT
1 TTTATATAT
52410841 TTT-TATAT
1 TTTATATAT
52410849 TTT-TGA-AT
1 TTTAT-ATAT
52410857 TTT-TATAT
1 TTTATATAT
52410865 TTTATATAT
1 TTTATATAT
52410874 TTTA
1 TTTA
52410878 AAATATTAAT
Statistics
Matches: 68, Mismatches: 7, Indels: 15
0.76 0.08 0.17
Matches are distributed among these distances:
7 1 0.01
8 36 0.53
9 22 0.32
10 5 0.07
11 4 0.06
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (9 bp):
TTTATATAT
Found at i:52413435 original size:16 final size:16
Alignment explanation
Indices: 52413414--52413477 Score: 53
Period size: 16 Copynumber: 4.0 Consensus size: 16
52413404 TTTTATTTTT
52413414 TTATGTAATTTATTTG
1 TTATGTAATTTATTTG
* *
52413430 TTATGT-GTTT-TTAGG
1 TTATGTAATTTATT-TG
*
52413445 TTGAT-TAGATTTATTTT
1 TT-ATGTA-ATTTATTTG
52413462 TTATGTAATTTATTTG
1 TTATGTAATTTATTTG
52413478 GCATGTTATT
Statistics
Matches: 36, Mismatches: 6, Indels: 12
0.67 0.11 0.22
Matches are distributed among these distances:
14 2 0.06
15 7 0.19
16 18 0.50
17 7 0.19
18 2 0.06
ACGTcount: A:0.22, C:0.00, G:0.16, T:0.62
Consensus pattern (16 bp):
TTATGTAATTTATTTG
Found at i:52415127 original size:14 final size:14
Alignment explanation
Indices: 52415116--52415143 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
52415106 TTTTCTAATG
52415116 ATACTATTCTAACA
1 ATACTATTCTAACA
52415130 ATACTATTCTAACA
1 ATACTATTCTAACA
52415144 TGTAATTTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.21, G:0.00, T:0.36
Consensus pattern (14 bp):
ATACTATTCTAACA
Found at i:52420351 original size:27 final size:27
Alignment explanation
Indices: 52420304--52420373 Score: 86
Period size: 27 Copynumber: 2.6 Consensus size: 27
52420294 GTGGTACTGG
* *
52420304 TGCCGCCTATCAAATAGGGGTCACCAA
1 TGCCGCCTATCAGATAAGGGTCACCAA
* ***
52420331 TGCCGCCTATGAGATAAGGGTCACTGG
1 TGCCGCCTATCAGATAAGGGTCACCAA
52420358 TGCCGCCTATCAGATA
1 TGCCGCCTATCAGATA
52420374 GACATTATAT
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.26, C:0.27, G:0.26, T:0.21
Consensus pattern (27 bp):
TGCCGCCTATCAGATAAGGGTCACCAA
Found at i:52422406 original size:36 final size:36
Alignment explanation
Indices: 52422359--52422428 Score: 140
Period size: 36 Copynumber: 1.9 Consensus size: 36
52422349 AGTCAAATGT
52422359 GTCAGTTTTTAGGGATGTGCTGCCTATGCACCACGG
1 GTCAGTTTTTAGGGATGTGCTGCCTATGCACCACGG
52422395 GTCAGTTTTTAGGGATGTGCTGCCTATGCACCAC
1 GTCAGTTTTTAGGGATGTGCTGCCTATGCACCAC
52422429 CCTCCACTTG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.17, C:0.23, G:0.29, T:0.31
Consensus pattern (36 bp):
GTCAGTTTTTAGGGATGTGCTGCCTATGCACCACGG
Found at i:52423984 original size:34 final size:34
Alignment explanation
Indices: 52423946--52424017 Score: 92
Period size: 34 Copynumber: 2.1 Consensus size: 34
52423936 ACATAATTAT
* *
52423946 ATATGTATAGTTTGGTATAATCGAA-AGTGAATAC
1 ATATGTATAGTTTGATATAACCGAAGA-TGAATAC
* *
52423980 ATATGTATGGTTTGATATAACCGAAGATGAATAT
1 ATATGTATAGTTTGATATAACCGAAGATGAATAC
52424014 ATAT
1 ATAT
52424018 ATACATTTGT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
34 32 0.97
35 1 0.03
ACGTcount: A:0.39, C:0.06, G:0.19, T:0.36
Consensus pattern (34 bp):
ATATGTATAGTTTGATATAACCGAAGATGAATAC
Found at i:52424216 original size:59 final size:61
Alignment explanation
Indices: 52424089--52424223 Score: 154
Period size: 59 Copynumber: 2.3 Consensus size: 61
52424079 TAAGCTTGAG
* * *
52424089 ATGAGCACTAAGTGTGCGAAGTGAAATTGGTACTGAGTACTAAGTGTACGAAATTGATCAT
1 ATGAGCACTAAGTGTGCAAAGTGAAATTGATACCGAGTACTAAGTGTACGAAATTGATCAT
* * * *
52424150 TTG-GCACTAAGTGTGCAAATTG-AATTTATACCGAGTACTAAGTGTAC-AAGATCTG-TTA-
1 ATGAGCACTAAGTGTGCAAAGTGAAATTGATACCGAGTACTAAGTGTACGAA-AT-TGATCAT
52424208 ATGAGCACTAAGTGTG
1 ATGAGCACTAAGTGTG
52424224 TGAGTTTATC
Statistics
Matches: 63, Mismatches: 8, Indels: 8
0.80 0.10 0.10
Matches are distributed among these distances:
58 4 0.06
59 38 0.60
60 19 0.30
61 2 0.03
ACGTcount: A:0.33, C:0.13, G:0.24, T:0.30
Consensus pattern (61 bp):
ATGAGCACTAAGTGTGCAAAGTGAAATTGATACCGAGTACTAAGTGTACGAAATTGATCAT
Found at i:52431103 original size:34 final size:34
Alignment explanation
Indices: 52431065--52431136 Score: 92
Period size: 34 Copynumber: 2.1 Consensus size: 34
52431055 ACATAATTAT
* *
52431065 ATATGTATAGTTTGGTATAATCGAA-AGTGAATAC
1 ATATGTATAGTTTGATATAACCGAAGA-TGAATAC
* *
52431099 ATATGTATGGTTTGATATAACCGAAGATGAATAT
1 ATATGTATAGTTTGATATAACCGAAGATGAATAC
52431133 ATAT
1 ATAT
52431137 ACATTTGTTT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
34 32 0.97
35 1 0.03
ACGTcount: A:0.39, C:0.06, G:0.19, T:0.36
Consensus pattern (34 bp):
ATATGTATAGTTTGATATAACCGAAGATGAATAC
Found at i:52431337 original size:59 final size:61
Alignment explanation
Indices: 52431206--52431343 Score: 149
Period size: 59 Copynumber: 2.3 Consensus size: 61
52431196 TAAGCTTGAG
* * * *
52431206 ATGAGCACTAAGTGTGCGAAGTGAAATTGGTACTGAGTACTAAGTGTACGAAATTGATCAT
1 ATGAGCACTAAGTGTGCGAAATGAAATTGATACCGAGTACTAAGTGTACGAAATCGATCAT
* * * * * *
52431267 TTG-GCATTAAGTGTGC-AAATCG-AATTTATACCGAGTACTAAGTGTACGAGATCGGTTA-
1 ATGAGCACTAAGTGTGCGAAAT-GAAATTGATACCGAGTACTAAGTGTACGAAATCGATCAT
52431325 ATGAGCACTAAGTGTGCGA
1 ATGAGCACTAAGTGTGCGA
52431344 GTTTATCTTT
Statistics
Matches: 62, Mismatches: 12, Indels: 7
0.77 0.15 0.09
Matches are distributed among these distances:
58 2 0.03
59 44 0.71
60 14 0.23
61 2 0.03
ACGTcount: A:0.33, C:0.13, G:0.26, T:0.28
Consensus pattern (61 bp):
ATGAGCACTAAGTGTGCGAAATGAAATTGATACCGAGTACTAAGTGTACGAAATCGATCAT
Found at i:52437045 original size:26 final size:28
Alignment explanation
Indices: 52437005--52437056 Score: 72
Period size: 27 Copynumber: 1.9 Consensus size: 28
52436995 GGAATTTAAA
52437005 AAAAGAACAGGTGAAACA-AAAAAAATG
1 AAAAGAACAGGTGAAACAGAAAAAAATG
* *
52437032 AAAAG-ACAGTTGAAATAGAAAAAAA
1 AAAAGAACAGGTGAAACAGAAAAAAA
52437057 AAGAATTGAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 10 0.45
27 12 0.55
ACGTcount: A:0.67, C:0.06, G:0.17, T:0.10
Consensus pattern (28 bp):
AAAAGAACAGGTGAAACAGAAAAAAATG
Found at i:52440835 original size:20 final size:20
Alignment explanation
Indices: 52440788--52440853 Score: 69
Period size: 20 Copynumber: 3.2 Consensus size: 20
52440778 GTGTAGGGGT
* *
52440788 CACACGCCCAAGTAAAGGAGG
1 CACACGCCCATGTAAA-AAGG
*
52440809 CACACGCTCATGTAAAAAGG
1 CACACGCCCATGTAAAAAGG
* *
52440829 CATACGCCCGTGTAAAAAGG
1 CACACGCCCATGTAAAAAGG
*
52440849 TACAC
1 CACAC
52440854 AGTCGTGTGG
Statistics
Matches: 37, Mismatches: 8, Indels: 1
0.80 0.17 0.02
Matches are distributed among these distances:
20 23 0.62
21 14 0.38
ACGTcount: A:0.38, C:0.27, G:0.23, T:0.12
Consensus pattern (20 bp):
CACACGCCCATGTAAAAAGG
Found at i:52444385 original size:22 final size:22
Alignment explanation
Indices: 52444335--52444393 Score: 77
Period size: 20 Copynumber: 2.8 Consensus size: 22
52444325 ATGTCCAAGT
** *
52444335 AAAGGAGGCACATGCCCATGTG
1 AAAGGAGGCACACACCCATGAG
52444357 AAA--AGGCACACACCCATGAG
1 AAAGGAGGCACACACCCATGAG
52444377 AAAGGAGGCACACACCC
1 AAAGGAGGCACACACCC
52444394 GTGTGTTCCA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
20 17 0.53
22 15 0.47
ACGTcount: A:0.39, C:0.29, G:0.25, T:0.07
Consensus pattern (22 bp):
AAAGGAGGCACACACCCATGAG
Found at i:52444486 original size:21 final size:21
Alignment explanation
Indices: 52444460--52444528 Score: 79
Period size: 21 Copynumber: 3.3 Consensus size: 21
52444450 CAGGATCAAC
*
52444460 CGTGTGAAAGTCTGACACGGT
1 CGTGTGAAAGTCTGACACGCT
52444481 CGTGTGAAAGTCTGTCACAC-CT
1 CGTGTGAAAGTCTG--ACACGCT
* *
52444503 -GTGTGAAAATCTGTCACGCT
1 CGTGTGAAAGTCTGACACGCT
52444523 CGTGTG
1 CGTGTG
52444529 CCCATAGGAC
Statistics
Matches: 41, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
19 3 0.07
20 2 0.05
21 31 0.76
22 1 0.02
23 4 0.10
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.28
Consensus pattern (21 bp):
CGTGTGAAAGTCTGACACGCT
Found at i:52448962 original size:19 final size:19
Alignment explanation
Indices: 52448938--52448974 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
52448928 ATTTTGATGT
52448938 TGTGGTATG-ATAGTTTAAA
1 TGTGGTATGTAT-GTTTAAA
52448957 TGTGGTATGTATGTTTAA
1 TGTGGTATGTATGTTTAA
52448975 TTCGATGTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 15 0.88
20 2 0.12
ACGTcount: A:0.27, C:0.00, G:0.27, T:0.46
Consensus pattern (19 bp):
TGTGGTATGTATGTTTAAA
Found at i:52450823 original size:36 final size:36
Alignment explanation
Indices: 52450783--52450856 Score: 103
Period size: 36 Copynumber: 2.1 Consensus size: 36
52450773 AGAGTGGGAA
* * *
52450783 AGAAAAAGTTATGAGAGAAAGATATAGGGATGAGAG
1 AGAAAAAGATATGAGAGAAAGATAGAGGGACGAGAG
* *
52450819 AGAAAGAGATATGGGAGAAAGATAGAGGGACGAGAG
1 AGAAAAAGATATGAGAGAAAGATAGAGGGACGAGAG
52450855 AG
1 AG
52450857 GGAAAGTCAA
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.49, C:0.01, G:0.38, T:0.12
Consensus pattern (36 bp):
AGAAAAAGATATGAGAGAAAGATAGAGGGACGAGAG
Found at i:52455744 original size:12 final size:12
Alignment explanation
Indices: 52455727--52455751 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
52455717 TTAAAATAAC
52455727 TGATAAGTTACT
1 TGATAAGTTACT
52455739 TGATAAGTTACT
1 TGATAAGTTACT
52455751 T
1 T
52455752 TTCGTTATAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.08, G:0.16, T:0.44
Consensus pattern (12 bp):
TGATAAGTTACT
Found at i:52463442 original size:47 final size:49
Alignment explanation
Indices: 52463373--52463689 Score: 162
Period size: 46 Copynumber: 6.7 Consensus size: 49
52463363 AGTGTAATGC
*
52463373 CGATGTCATGTCCCAGACATGGTCTTACACTGGCTCATC-CATC-AAGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCACATCGAAGT
* * * * * *
52463420 CGATGCCATGTCCCACACATGGTCTTACATTGACT-ATCGAAATCGAGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATC-ACATCGAAGT
* * * * ***
52463469 CGACGCCATGTGCCAAACGTGGTCTTACACTGGCTC-TCACATCTCCGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCACATCGAAGT
* * * * ** *
52463517 GCTGATGCCATGTCTCAGACATGGTCTTACATTGACACAT--C-TCCTAGC
1 -C-GATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCACATCGAAGT
* * * * *
52463565 CGAT-ACATGTCCCAGACAT-GTTTTACACTGGCTTA-CATC-TCGAGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCA-CATCGAAGT
* * * *
52463611 CGATG-CATGTCCTAGATAT-GTCTTACACTAGCTC-TCGTC-TC-AATGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATC-ACATCGAA-GT
* * * *
52463657 CGTTGCCAAGTCCTAGACATGGTCTTAGACTGG
1 CGATGCCATGTCCCAGACATGGTCTTACACTGG
52463690 ATCCCATAAT
Statistics
Matches: 201, Mismatches: 53, Indels: 31
0.71 0.19 0.11
Matches are distributed among these distances:
44 11 0.05
45 14 0.07
46 48 0.24
47 44 0.22
48 21 0.10
49 35 0.17
50 27 0.13
51 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (49 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCACATCGAAGT
Found at i:52467026 original size:45 final size:45
Alignment explanation
Indices: 52466806--52467032 Score: 273
Period size: 45 Copynumber: 5.1 Consensus size: 45
52466796 TTTTCTCAAA
* * *
52466806 TCACCGGCATT-TCGCCTGCTAGGCTC-GAGGCCCG-ATATCATT
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAACATT
* * * * ** *
52466848 CCACCGGTATTATAGCCTGTTAGGCTCGAAA-GCCTGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTC-AAAGGCCCGAATAACATT
* * *
52466893 TCACCGGCATTATAGGCTGCTAGGCTCAAAGGCCCGAATAATATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAACATT
*
52466938 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCTGAATAACATT
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAACATT
* *
52466983 TCACCGGCATTATAGCCTGTTAGGCTCAAAGGCCCGAAAAACATT
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAACATT
52467028 TCACC
1 TCACC
52467033 ACTTCTTTCC
Statistics
Matches: 158, Mismatches: 22, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
42 9 0.06
43 13 0.08
44 7 0.04
45 129 0.82
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.24
Consensus pattern (45 bp):
TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAACATT
Found at i:52468753 original size:23 final size:23
Alignment explanation
Indices: 52468725--52468768 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
52468715 CTCCACACTG
52468725 ATATGA-TATGTAAATATTAGAAT
1 ATATGATTATGT-AATATTAGAAT
*
52468748 ATATGATTTTGTAATATTAGA
1 ATATGATTATGTAATATTAGA
52468769 GATTTGATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
23 15 0.79
24 4 0.21
ACGTcount: A:0.43, C:0.00, G:0.14, T:0.43
Consensus pattern (23 bp):
ATATGATTATGTAATATTAGAAT
Found at i:52473526 original size:29 final size:29
Alignment explanation
Indices: 52473469--52473526 Score: 80
Period size: 29 Copynumber: 2.0 Consensus size: 29
52473459 TCTCCAAATT
*
52473469 ATATATATTATATTACTCAATCCCGTCAA
1 ATATATATTATATTACTCAATCCCATCAA
* * *
52473498 ATATTTATTATATTATTCAATCTCATCAA
1 ATATATATTATATTACTCAATCCCATCAA
52473527 CATGTGACTA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.38, C:0.17, G:0.02, T:0.43
Consensus pattern (29 bp):
ATATATATTATATTACTCAATCCCATCAA
Found at i:52485742 original size:11 final size:11
Alignment explanation
Indices: 52485726--52485777 Score: 63
Period size: 11 Copynumber: 4.9 Consensus size: 11
52485716 GAGACTGTAG
52485726 AAAAAGAAAAA
1 AAAAAGAAAAA
52485737 AAAAAGAAAAA
1 AAAAAGAAAAA
*
52485748 AAAAAG--AGA
1 AAAAAGAAAAA
*
52485757 GAAAAGAAAAA
1 AAAAAGAAAAA
*
52485768 GAAAAGAAAA
1 AAAAAGAAAA
52485778 TTAAAAAAAA
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
9 7 0.19
11 29 0.81
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (11 bp):
AAAAAGAAAAA
Found at i:52487355 original size:16 final size:16
Alignment explanation
Indices: 52487334--52487365 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
52487324 TTAATTAATC
52487334 ACTTGGATGCTAAGTT
1 ACTTGGATGCTAAGTT
52487350 ACTTGGATGCTAAGTT
1 ACTTGGATGCTAAGTT
52487366 GCTTTGATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.25, C:0.12, G:0.25, T:0.38
Consensus pattern (16 bp):
ACTTGGATGCTAAGTT
Found at i:52490876 original size:33 final size:33
Alignment explanation
Indices: 52490834--52490899 Score: 114
Period size: 33 Copynumber: 2.0 Consensus size: 33
52490824 TTTTGTGAAA
52490834 GGATTTTTCATGAAACCACCAAAAATAGACCTT
1 GGATTTTTCATGAAACCACCAAAAATAGACCTT
* *
52490867 GGATTTTTCATGAAACCACCTAAAATGGACCTT
1 GGATTTTTCATGAAACCACCAAAAATAGACCTT
52490900 TTTGTAAAGG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.36, C:0.21, G:0.14, T:0.29
Consensus pattern (33 bp):
GGATTTTTCATGAAACCACCAAAAATAGACCTT
Found at i:52491743 original size:48 final size:48
Alignment explanation
Indices: 52491657--52492046 Score: 345
Period size: 48 Copynumber: 8.0 Consensus size: 48
52491647 TGATACTAGG
* * * *
52491657 GTTATGTAGGAGCCAGTGTAAGACCATGTTTGGAACATGGCATTGGCATT
1 GTTATG-A-GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATT
* * * *
52491707 GTTATGAGAACTAGTGTAAGACTATGTCTGGGACATGGCATCGGCCTC
1 GTTATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATT
** * * * * * *
52491755 AATATGCGAGCCAGCGTAAGACCATGTTTGGAACATGGCACCGGCATT
1 GTTATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATT
* * * * *
52491803 GTTAT-ATGTGTTAGTGTAAGACCATGTCTGAGACATGGCATCAGCACT
1 GTTATGA-GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATT
* * *
52491851 GATGTATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTC
1 G-T-TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATT
** * * * * *
52491901 CATATGCGAGCTAGTGTAAGACAATGTTTGGAACATGGCATTGGCATT
1 GTTATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATT
* **
52491949 GTTAT-ATGTG-TCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACC
1 GTTATGA-GAGCT-AGTGTAAGACCATGTCTGGGACATGGCATCGGCATT
** *
52491997 GATGTATGAGAGCTAGTGTAAGACCATGTCCAGGACATGGCATCAGCATT
1 G-T-TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATT
52492047 TTACCCTTTT
Statistics
Matches: 265, Mismatches: 65, Indels: 20
0.76 0.19 0.06
Matches are distributed among these distances:
47 1 0.00
48 178 0.67
49 3 0.01
50 80 0.30
51 3 0.01
ACGTcount: A:0.27, C:0.18, G:0.28, T:0.27
Consensus pattern (48 bp):
GTTATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATT
Found at i:52491830 original size:96 final size:98
Alignment explanation
Indices: 52491666--52492044 Score: 313
Period size: 98 Copynumber: 3.9 Consensus size: 98
52491656 GGTTATGTAG
** *
52491666 GAGCCAGTGTAAGACCATGTTTGGAACATGGCATTGGCATTGTTATGAGAACTAGTGTAAGACTA
1 GAGCCAGTGTAAGACCATGTTTGGAACATGGCACCGGCATTGTTATGAGAACTAGTGTAAGACCA
* * *
52491731 TGTCTGGGACATGGCATCGGC-CTCA-ATATGC
66 TGTCTGAGACATGGCATCAGCACTCATATATGA
* ***
52491762 GAGCCAGCGTAAGACCATGTTTGGAACATGGCACCGGCATTGTTAT-ATGTGTTAGTGTAAGACC
1 GAGCCAGTGTAAGACCATGTTTGGAACATGGCACCGGCATTGTTATGA-GAACTAGTGTAAGACC
* *
52491826 ATGTCTGAGACATGGCATCAGCACTGATGTATGA
65 ATGTCTGAGACATGGCATCAGCACTCATATATGA
* * * * * * *** * * *
52491860 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCCATATGCGAGCTAGTGTAAGACAA
1 GAGCCAGTGTAAGACCATGTTTGGAACATGGCACCGGCATTGTTATGAGAACTAGTGTAAGACCA
* ** * **
52491925 TGTTTG-GAACATGGCATTGGCATTGTTATAT--
66 TGTCTGAG-ACATGGCATCAGCACTCATATATGA
* * * * * ** *
52491956 GTGTCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACCGATGTATGAGAGCTAGTGTAAGAC
1 GAGCCAGTGTAAGACCATGTTTGGAACATGGCACCGGCATTG-T-TATGAGAACTAGTGTAAGAC
*
52492021 CATGTC-CAGGACATGGCATCAGCA
64 CATGTCTGA-GACATGGCATCAGCA
52492045 TTTTACCCTT
Statistics
Matches: 228, Mismatches: 46, Indels: 16
0.79 0.16 0.06
Matches are distributed among these distances:
95 1 0.00
96 110 0.48
97 4 0.02
98 112 0.49
99 1 0.00
ACGTcount: A:0.27, C:0.19, G:0.28, T:0.26
Consensus pattern (98 bp):
GAGCCAGTGTAAGACCATGTTTGGAACATGGCACCGGCATTGTTATGAGAACTAGTGTAAGACCA
TGTCTGAGACATGGCATCAGCACTCATATATGA
Found at i:52491921 original size:146 final size:145
Alignment explanation
Indices: 52491670--52492043 Score: 554
Period size: 146 Copynumber: 2.6 Consensus size: 145
52491660 ATGTAGGAGC
* * * * *
52491670 CAGTGTAAGACCATGTTTGGAACATGGCATTGGCATTG-T-TATGAGAACTAGTGTAAGACTATG
1 CAGTGTAAGACCATGTCTGG-ACATGGCATCGGCACTGATGTATGAGAGCTAGTGTAAGACCATG
* *
52491733 TCTGGGACATGGCATCGGCCTCAATATGCGAGCCAGCGTAAGACCATGTTTGGAACATGGCACCG
65 TCTGGGACATGGCATCAGCCTCAATATGCGAGCCAGCGTAAGACAATGTTTGGAACATGGCACCG
52491798 GCATTGTTATATGTGT
130 GCATTGTTATATGTGT
* *
52491814 TAGTGTAAGACCATGTCTGAGACATGGCATCAGCACTGATGTATGAGAGCTAGTGTAAGACCATG
1 CAGTGTAAGACCATGTCTG-GACATGGCATCGGCACTGATGTATGAGAGCTAGTGTAAGACCATG
* * * **
52491879 TCTGGGACATGGCATCAGCCTCCATATGCGAGCTAGTGTAAGACAATGTTTGGAACATGGCATTG
65 TCTGGGACATGGCATCAGCCTCAATATGCGAGCCAGCGTAAGACAATGTTTGGAACATGGCACCG
52491944 GCATTGTTATATGTGT
130 GCATTGTTATATGTGT
*
52491960 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCACCGATGTATGAGAGCTAGTGTAAGACCATG
1 CAGTGTAAGACCATGTCT-GGACATGGCATCGGCACTGATGTATGAGAGCTAGTGTAAGACCATG
**
52492025 TCCAGGACATGGCATCAGC
65 TCTGGGACATGGCATCAGC
52492044 ATTTTACCCT
Statistics
Matches: 207, Mismatches: 19, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
144 31 0.15
145 2 0.01
146 173 0.84
147 1 0.00
ACGTcount: A:0.27, C:0.19, G:0.28, T:0.26
Consensus pattern (145 bp):
CAGTGTAAGACCATGTCTGGACATGGCATCGGCACTGATGTATGAGAGCTAGTGTAAGACCATGT
CTGGGACATGGCATCAGCCTCAATATGCGAGCCAGCGTAAGACAATGTTTGGAACATGGCACCGG
CATTGTTATATGTGT
Found at i:52494771 original size:27 final size:27
Alignment explanation
Indices: 52494741--52495139 Score: 295
Period size: 27 Copynumber: 14.6 Consensus size: 27
52494731 ATATTGAGTC
* *
52494741 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
52494768 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
52494795 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
52494822 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
52494850 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* *
52494877 CGCACACTTAGTGC-ATCATATTCAAAT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * *
52494904 CGCACACTTAGTGCTGTACA-ATTTAATCC
1 CGCACACTTAGTGC--TACATAATCAA-CT
* * **
52494933 CGCGCACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * * *
52494960 CGCACACTTAATGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
* * *
52494987 CGCACACTTAGTGCTGTACA-ATTTAATCC
1 CGCACACTTAGTGC--TACATAATCAA-CT
* *
52495016 CGCGCACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
52495044 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
52495071 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * *
52495098 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
52495125 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
52495140 GTACAATTTA
Statistics
Matches: 305, Mismatches: 51, Indels: 32
0.79 0.13 0.08
Matches are distributed among these distances:
26 1 0.00
27 210 0.69
28 60 0.20
29 33 0.11
30 1 0.00
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:52494985 original size:83 final size:82
Alignment explanation
Indices: 52494789--52495138 Score: 350
Period size: 83 Copynumber: 4.2 Consensus size: 82
52494779 TGCTATATAA
* * * * * * * *
52494789 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGC--TACATAGTCAAACTCG
1 TCAATTCGCACACTTAGTGCAACATAGTCAAATCGCACACTTAGTGCTGTACA-ATTTAATCCCG
* * *
52494852 CACACTTAGTGCCGCATGG
65 CGCACTTAGTG-CTCATAG
* *
52494871 TCAATTCGCACACTTAGTGCATCATATTCAAATCGCACACTTAGTGCTGTACAATTTAATCCCGC
1 TCAATTCGCACACTTAGTGCAACATAGTCAAATCGCACACTTAGTGCTGTACAATTTAATCCCGC
*
52494936 GCACTTAGTGCATCATAT
66 GCACTTAGTGC-TCATAG
* *
52494954 TCATTTCGCACACTTAATGCAACATAGTCAAATCGCACACTTAGTGCTGTACAATTTAATCCCGC
1 TCAATTCGCACACTTAGTGCAACATAGTCAAATCGCACACTTAGTGCTGTACAATTTAATCCCGC
52495019 GCACTTAGTGCTACATAG
66 GCACTTAGTGCT-CATAG
* ** * * * * **
52495037 TCAAACTCGCACACTTAGTGCCGCATGGTCAATTCGCACACTTAGTGC-AT-C-ATATTCATTTC
1 TC-AATTCGCACACTTAGTGCAACATAGTCAAATCGCACACTTAGTGCTGTACAAT-TTAATCCC
* *
52495099 GCACACTTAGTGCAACATAG
64 GCGCACTTAGTGC-TCATAG
*
52495119 TCAAATCGCACACTTAGTGC
1 TCAATTCGCACACTTAGTGC
52495139 TGTACAATTT
Statistics
Matches: 229, Mismatches: 32, Indels: 15
0.83 0.12 0.05
Matches are distributed among these distances:
81 19 0.08
82 69 0.30
83 99 0.43
84 42 0.18
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.28
Consensus pattern (82 bp):
TCAATTCGCACACTTAGTGCAACATAGTCAAATCGCACACTTAGTGCTGTACAATTTAATCCCGC
GCACTTAGTGCTCATAG
Found at i:52495079 original size:138 final size:136
Alignment explanation
Indices: 52494740--52495164 Score: 470
Period size: 138 Copynumber: 3.1 Consensus size: 136
52494730 TATATTGAGT
* * * ** *
52494740 CCGCACACTCAGTGCTATATAATC-AACTCGCACACTCAGTGCTATATAATCAACTCGCACACTT
1 CCGCACACTTAGTGCTACATAATCAAACTCGCACACTTAGTGCTGCAT--TCAATTCGCACACTT
* * ** * *
52494804 AGTGC-TACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCCG--
64 AGTGCAT-CATATTCATTTCGCACACTTAGTGCAACATAGTCAAA-TCGCACACTTAGTGCTGTA
*
52494866 C-ATGGTCAAT-
127 CAAT--TTAATC
* * * * *
52494876 TCGCACACTTAGTGC-ATCATATTCAAA-TCGCACACTTAGTGCTGTACAATTTAATCCCGCGCA
1 CCGCACACTTAGTGCTA-CATAATCAAACTCGCACACTTAGTGCTG--C-ATTCAAT-TCGCACA
*
52494939 CTTAGTGCATCATATTCATTTCGCACACTTAATGCAACATAGTCAAATCGCACACTTAGTGCTGT
61 CTTAGTGCATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCACACTTAGTGCTGT
52495004 ACAATTTAATC
126 ACAATTTAATC
* * *
52495015 CCGCGCACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCCGCATGGTCAATTCGCACACTT
1 CCGCACACTTAGTGCTACATAATCAAACTCGCACACTTAGTGCTGCAT--TCAATTCGCACACTT
52495080 AGTGCATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCACACTTAGTGCTGTACA
64 AGTGCATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCACACTTAGTGCTGTACA
52495145 ATTTAATC
129 ATTTAATC
*
52495153 CCGCGCACTTAG
1 CCGCACACTTAG
52495165 CGCCAATCTC
Statistics
Matches: 247, Mismatches: 27, Indels: 28
0.82 0.09 0.09
Matches are distributed among these distances:
135 1 0.00
136 33 0.13
137 23 0.09
138 141 0.57
139 30 0.12
140 19 0.08
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.28
Consensus pattern (136 bp):
CCGCACACTTAGTGCTACATAATCAAACTCGCACACTTAGTGCTGCATTCAATTCGCACACTTAG
TGCATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCACACTTAGTGCTGTACAAT
TTAATC
Found at i:52500399 original size:42 final size:42
Alignment explanation
Indices: 52500330--52500488 Score: 142
Period size: 42 Copynumber: 3.8 Consensus size: 42
52500320 GGATATGGCA
* * * * *
52500330 ATGGCATCGGTATGTG-TTATCATGTAAGACCATATCTGAGAT
1 ATGGCATCGATATGAGATT-TCGTGTAAGACCATATTTGGGAT
* * ** *
52500372 ATGGCGTTGATATGAGATTTCGTGTAAGACCACGTTTGGGAC
1 ATGGCATCGATATGAGATTTCGTGTAAGACCATATTTGGGAT
* *
52500414 ATGGCATCGAAATGAGATTTCGTAG-AAGATCATATTTGGGAT
1 ATGGCATCGATATGAGATTTCGT-GTAAGACCATATTTGGGAT
* ** *
52500456 ATGGCATCGATGTGAGATCCCATGTAAGACCAT
1 ATGGCATCGATATGAGATTTCGTGTAAGACCAT
52500489 GTCTAGGACA
Statistics
Matches: 91, Mismatches: 23, Indels: 6
0.76 0.19 0.05
Matches are distributed among these distances:
41 1 0.01
42 87 0.96
43 3 0.03
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.30
Consensus pattern (42 bp):
ATGGCATCGATATGAGATTTCGTGTAAGACCATATTTGGGAT
Found at i:52503908 original size:14 final size:14
Alignment explanation
Indices: 52503889--52503917 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
52503879 AACCCTTATT
52503889 CTGGATTGAAACTA
1 CTGGATTGAAACTA
52503903 CTGGATTGAAACTA
1 CTGGATTGAAACTA
52503917 C
1 C
52503918 GATTAATTCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.34, C:0.17, G:0.21, T:0.28
Consensus pattern (14 bp):
CTGGATTGAAACTA
Found at i:52518498 original size:11 final size:12
Alignment explanation
Indices: 52518466--52518498 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
52518456 GAGTTGTAGC
52518466 AAACTTAATTAT
1 AAACTTAATTAT
*
52518478 AAACTGAATTA-
1 AAACTTAATTAT
52518489 AAACTTAATT
1 AAACTTAATT
52518499 TATTAGAATG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
11 9 0.47
12 10 0.53
ACGTcount: A:0.52, C:0.09, G:0.03, T:0.36
Consensus pattern (12 bp):
AAACTTAATTAT
Found at i:52518566 original size:20 final size:21
Alignment explanation
Indices: 52518529--52518574 Score: 67
Period size: 20 Copynumber: 2.2 Consensus size: 21
52518519 GAGCTGAATC
*
52518529 GAGCTGAATTCTAGCTCAAAT
1 GAGCTGAATTCGAGCTCAAAT
*
52518550 GAGCTGAA-TCGAGCTCAAGT
1 GAGCTGAATTCGAGCTCAAAT
52518570 GAGCT
1 GAGCT
52518575 AATGGGAGAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 15 0.65
21 8 0.35
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.24
Consensus pattern (21 bp):
GAGCTGAATTCGAGCTCAAAT
Found at i:52519603 original size:22 final size:23
Alignment explanation
Indices: 52519563--52519611 Score: 64
Period size: 22 Copynumber: 2.2 Consensus size: 23
52519553 TTATCACAAC
*
52519563 TCTTTTTCTTTTCTCTTTCAATT
1 TCTTTTTCTTCTCTCTTTCAATT
* *
52519586 TCTTTTTC-TCTCTTTTTCATTT
1 TCTTTTTCTTCTCTCTTTCAATT
52519608 TCTT
1 TCTT
52519612 GCCTTTCTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
22 15 0.65
23 8 0.35
ACGTcount: A:0.06, C:0.22, G:0.00, T:0.71
Consensus pattern (23 bp):
TCTTTTTCTTCTCTCTTTCAATT
Found at i:52523164 original size:11 final size:12
Alignment explanation
Indices: 52523132--52523164 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
52523122 GAGCTGTAGC
52523132 AAACTTAATTAT
1 AAACTTAATTAT
*
52523144 AAACTGAATTA-
1 AAACTTAATTAT
52523155 AAACTTAATT
1 AAACTTAATT
52523165 TATTAGAATG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
11 9 0.47
12 10 0.53
ACGTcount: A:0.52, C:0.09, G:0.03, T:0.36
Consensus pattern (12 bp):
AAACTTAATTAT
Found at i:52526607 original size:27 final size:27
Alignment explanation
Indices: 52526533--52526599 Score: 89
Period size: 27 Copynumber: 2.5 Consensus size: 27
52526523 ATCTCAACGA
**
52526533 GACGTTAAACACGGGGTAGTCTAGCAG
1 GACGTTAAACACGGGGTAGTCTAAAAG
* * *
52526560 GATGTTAAACATGGGGCAGTCTAAAAG
1 GACGTTAAACACGGGGTAGTCTAAAAG
52526587 GACGTTAAACACG
1 GACGTTAAACACG
52526600 AGATAGTCCG
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.34, C:0.16, G:0.30, T:0.19
Consensus pattern (27 bp):
GACGTTAAACACGGGGTAGTCTAAAAG
Found at i:52533588 original size:3 final size:3
Alignment explanation
Indices: 52533580--52533606 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
52533570 ATTGCAAGTT
52533580 GAA GAA GAA GAA GAA GAA GAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA
52533607 CAATGCAGTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:52537459 original size:21 final size:21
Alignment explanation
Indices: 52537435--52537484 Score: 61
Period size: 18 Copynumber: 2.5 Consensus size: 21
52537425 ATCAAAAACA
52537435 ATTATAAAATTTAATTTAAAT
1 ATTATAAAATTTAATTTAAAT
52537456 ATTAT--AA-TTAATTTAAAT
1 ATTATAAAATTTAATTTAAAT
*
52537474 ATATTTAAAAT
1 AT-TATAAAAT
52537485 ATATAAATTT
Statistics
Matches: 24, Mismatches: 1, Indels: 7
0.75 0.03 0.22
Matches are distributed among these distances:
18 13 0.54
19 4 0.17
21 7 0.29
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (21 bp):
ATTATAAAATTTAATTTAAAT
Found at i:52540195 original size:6 final size:6
Alignment explanation
Indices: 52540184--52540208 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
52540174 TCTTAATATA
52540184 ACTCAT ACTCAT ACTCAT ACTCAT A
1 ACTCAT ACTCAT ACTCAT ACTCAT A
52540209 TAAATATAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.36, C:0.32, G:0.00, T:0.32
Consensus pattern (6 bp):
ACTCAT
Found at i:52541711 original size:19 final size:20
Alignment explanation
Indices: 52541673--52541711 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
52541663 CTAATTCTCC
* *
52541673 TTCTTTCTCTTTTTCTTTCT
1 TTCTTTCTCTGTTTCGTTCT
52541693 TTCTTT-TCTGTTTCGTTCT
1 TTCTTTCTCTGTTTCGTTCT
52541712 ATCTCTTTAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 11 0.65
20 6 0.35
ACGTcount: A:0.00, C:0.23, G:0.05, T:0.72
Consensus pattern (20 bp):
TTCTTTCTCTGTTTCGTTCT
Found at i:52542923 original size:13 final size:13
Alignment explanation
Indices: 52542905--52542944 Score: 71
Period size: 13 Copynumber: 3.1 Consensus size: 13
52542895 AAGTAAGTGA
52542905 TCTTGATGGTTTT
1 TCTTGATGGTTTT
52542918 TCTTGATGGTTTT
1 TCTTGATGGTTTT
*
52542931 TCTTGATGATTTT
1 TCTTGATGGTTTT
52542944 T
1 T
52542945 GTACATTTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 26 1.00
ACGTcount: A:0.10, C:0.07, G:0.20, T:0.62
Consensus pattern (13 bp):
TCTTGATGGTTTT
Found at i:52543819 original size:46 final size:46
Alignment explanation
Indices: 52543640--52543848 Score: 176
Period size: 46 Copynumber: 4.5 Consensus size: 46
52543630 ATTGTGTGCT
* * **
52543640 AGTGTAAGACATGTTTGGGACATGCATCGGCCACATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCTACAAGATGAGAGCC
* ** * *
52543686 AGTGTAAGACCATGTCTGGGACTTGGCATCGGC-ATTGAGACGAGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTA-CAAGATGAGAGCC
* * * *
52543734 AGTGTAAGACATATCTGGGACATGCCTCAGCCT-CGAGATGTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATC-GGCTACAAGATG-AGAGCC
* * *
52543780 AGTGTAAGACATGTCTGAGACATGCATCGGCTACAAGAT--GTGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCTACAAGATGAGAGCC
*
52543824 AGTGTAAGACCATGTCTAGGACATG
1 AGTGTAAGA-CATGTCTGGGACATG
52543849 TCTTCGGTAC
Statistics
Matches: 130, Mismatches: 24, Indels: 19
0.75 0.14 0.11
Matches are distributed among these distances:
44 11 0.08
45 16 0.12
46 51 0.39
47 28 0.22
48 24 0.18
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCTACAAGATGAGAGCC
Found at i:52550177 original size:20 final size:20
Alignment explanation
Indices: 52550130--52550177 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 20
52550120 AGATAGGGGC
* * * *
52550130 ACATGCTCGTGTGGCTTGGG
1 ACATGCCCGTATGGCCTGGA
*
52550150 ACACGCCCGTATGGCCTGGA
1 ACATGCCCGTATGGCCTGGA
52550170 ACATGCCC
1 ACATGCCC
52550178 ATGTGCTACA
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.17, C:0.31, G:0.31, T:0.21
Consensus pattern (20 bp):
ACATGCCCGTATGGCCTGGA
Found at i:52550438 original size:17 final size:21
Alignment explanation
Indices: 52550416--52550458 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
52550406 ACCTAAAAAT
52550416 TTTCAA-CC-AAACAA-T-TA
1 TTTCAAGCCAAAACAAGTATA
52550433 TTTCAAGCCAAAACAAGTATA
1 TTTCAAGCCAAAACAAGTATA
52550454 TTTCA
1 TTTCA
52550459 TTTTCCAATC
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
17 6 0.27
18 2 0.09
19 6 0.27
20 1 0.05
21 7 0.32
ACGTcount: A:0.44, C:0.21, G:0.05, T:0.30
Consensus pattern (21 bp):
TTTCAAGCCAAAACAAGTATA
Found at i:52551118 original size:52 final size:53
Alignment explanation
Indices: 52550996--52551155 Score: 184
Period size: 52 Copynumber: 3.1 Consensus size: 53
52550986 CGGATCACAT
* * * *
52550996 ATCATACCGAGGCCATATCCCAGATATGGTCTTATAC-GGAATTACATTATCAC
1 ATCATACCGATGCCATAGCCCAGCTATGGTCTTATACGGGAATCACA-TATCAC
*
52551049 ATCACACCGATGCCATAGCCCAGCTATGGTCTTATACGGGAA-CACGA-ATCAC
1 ATCATACCGATGCCATAGCCCAGCTATGGTCTTATACGGGAATCAC-ATATCAC
** * * *
52551101 ATTGTACCGATGCCATAGCCCGGCTATGGTCTTATAC-GGAAGCATATATCAC
1 ATCATACCGATGCCATAGCCCAGCTATGGTCTTATACGGGAATCACATATCAC
52551153 ATC
1 ATC
52551156 TTTTCCGTCA
Statistics
Matches: 92, Mismatches: 11, Indels: 9
0.82 0.10 0.08
Matches are distributed among these distances:
51 5 0.05
52 47 0.51
53 35 0.38
54 5 0.05
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.25
Consensus pattern (53 bp):
ATCATACCGATGCCATAGCCCAGCTATGGTCTTATACGGGAATCACATATCAC
Found at i:52554105 original size:46 final size:46
Alignment explanation
Indices: 52553955--52554163 Score: 182
Period size: 46 Copynumber: 4.5 Consensus size: 46
52553945 ATTGTGAGCT
* * *
52553955 AGTGTAAGA-CATGTTTGGGACATGCATCGGCCAC-ATTATG-AGAGCC
1 AGTGTAAGACCATGTCTGGGACATGCATC-GCCTCGA-GATGTA-AGCC
* * * *
52554001 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACG-AGAGCT
1 AGTGTAAGACCATGTCTGGGACAT-GCATC-GCCTCGAGATGTA-AGCC
* *
52554049 AGTGTAAGA-CATATCTGGGACATGCCTCAGCCTCGAGATGTAAGCC
1 AGTGTAAGACCATGTCTGGGACATGCATC-GCCTCGAGATGTAAGCC
* * *
52554095 AGTGTAAGA-CATGTCTGGGACATGCATCGGCTACAAGATGT--GTC
1 AGTGTAAGACCATGTCTGGGACATGCATCGCCT-CGAGATGTAAGCC
52554139 AGTGTAAGACCATGTCTGGGACATG
1 AGTGTAAGACCATGTCTGGGACATG
52554164 GCTTCGGTAC
Statistics
Matches: 138, Mismatches: 19, Indels: 13
0.81 0.11 0.08
Matches are distributed among these distances:
44 11 0.08
45 18 0.13
46 57 0.41
47 27 0.20
48 24 0.17
49 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.30, T:0.23
Consensus pattern (46 bp):
AGTGTAAGACCATGTCTGGGACATGCATCGCCTCGAGATGTAAGCC
Found at i:52554785 original size:46 final size:46
Alignment explanation
Indices: 52554605--52554784 Score: 152
Period size: 46 Copynumber: 3.9 Consensus size: 46
52554595 ATTGTGTGCT
* * **
52554605 AGTGTAAGACAT-TTCTGGAACATGCATCGACCACATTATGAGAGCC
1 AGTGTAAGACATGTT-TGGGACATGCATCGACTACAAGATGAGAGCC
* ** * *
52554651 AGTATAAGAGCATGTTTGGGACATGGCATCGAC-ATTGAGACGAGAGCT
1 AGTGTAAGA-CATGTTTGGGACAT-GCATCGACTA-CAAGATGAGAGCC
* * * * *
52554699 AGTGTAGGACATGTTTGGGACATGCCTTAGCCT-CGAGATGTA-AGCC
1 AGTGTAAGACATGTTTGGGACATG-CATCGACTACAAGATG-AGAGCC
52554745 AGTGTAAGACATGTTTGGGACATGCATCGACTACAAGATG
1 AGTGTAAGACATGTTTGGGACATGCATCGACTACAAGATG
52554785 TGTTAGTGTA
Statistics
Matches: 105, Mismatches: 21, Indels: 16
0.74 0.15 0.11
Matches are distributed among these distances:
45 5 0.05
46 46 0.44
47 30 0.29
48 24 0.23
ACGTcount: A:0.30, C:0.18, G:0.28, T:0.24
Consensus pattern (46 bp):
AGTGTAAGACATGTTTGGGACATGCATCGACTACAAGATGAGAGCC
Found at i:52555425 original size:159 final size:160
Alignment explanation
Indices: 52555127--52555441 Score: 497
Period size: 159 Copynumber: 2.0 Consensus size: 160
52555117 CCTACTTTTA
*
52555127 TTTTATGAGCATGATGATGAATGAAAAAGTTGTTGTTATATTTATTTTCATGCAACTTACTAAGC
1 TTTTATGAGCATGATGATGAATGAAAAAGTTGTTGTTATATTTATTTTCAAGCAACTTACTAAGC
52555192 TTTATGCTTACCCCATTTCTTTCCATTTTCTTATAGTGCCACCTAATTAGCTCGTGGATCAACAA
66 TTTATGCTTACCCCATTTCTTTCCATTTTCTTATAGTGCCACCTAATTAGCTCGTGGATCAACAA
*
52555257 ACGTTGGAGGCATCGATCACACTATCTTGG
131 ACGTCGGAGGCATCGATCACACTATCTTGG
* *
52555287 TTTTATGAGCATGATGATGGATGATAAAGTTG-TGTTATATTTATTTTCAAGCAACTTACTAAGC
1 TTTTATGAGCATGATGATGAATGAAAAAGTTGTTGTTATATTTATTTTCAAGCAACTTACTAAGC
* ** ** ** * **
52555351 TTTATGCTTGCCCTGTTTCTTTTTATTTTCTTATAGTGCTGCCTAATTAGCTTGTGGATCAACGG
66 TTTATGCTTACCCCATTTCTTTCCATTTTCTTATAGTGCCACCTAATTAGCTCGTGGATCAACAA
52555416 ACGTCGGAGGCATCGATCACACTATC
131 ACGTCGGAGGCATCGATCACACTATC
52555442 ATTTGAAACA
Statistics
Matches: 141, Mismatches: 14, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
159 111 0.79
160 30 0.21
ACGTcount: A:0.25, C:0.18, G:0.18, T:0.39
Consensus pattern (160 bp):
TTTTATGAGCATGATGATGAATGAAAAAGTTGTTGTTATATTTATTTTCAAGCAACTTACTAAGC
TTTATGCTTACCCCATTTCTTTCCATTTTCTTATAGTGCCACCTAATTAGCTCGTGGATCAACAA
ACGTCGGAGGCATCGATCACACTATCTTGG
Found at i:52558945 original size:17 final size:18
Alignment explanation
Indices: 52558913--52558946 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
52558903 CGTGTGAACT
52558913 ACCTGTGTAGGCCCACAC
1 ACCTGTGTAGGCCCACAC
52558931 ACCTGTGTA-GCCCACA
1 ACCTGTGTAGGCCCACA
52558947 TGGCCCAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.24, C:0.38, G:0.21, T:0.18
Consensus pattern (18 bp):
ACCTGTGTAGGCCCACAC
Found at i:52559131 original size:19 final size:20
Alignment explanation
Indices: 52559100--52559137 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
52559090 GTGGCGTCGA
52559100 CAGAATGGTTTTCGACTTTT
1 CAGAATGGTTTTCGACTTTT
*
52559120 CAGAAT-GTTTTCGGCTTT
1 CAGAATGGTTTTCGACTTT
52559138 CACCAAAACC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 11 0.65
20 6 0.35
ACGTcount: A:0.18, C:0.16, G:0.21, T:0.45
Consensus pattern (20 bp):
CAGAATGGTTTTCGACTTTT
Found at i:52562193 original size:37 final size:37
Alignment explanation
Indices: 52562143--52562221 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
52562133 TTATTACGAA
* * *
52562143 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
52562180 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
52562217 GTCTT
1 GTCTT
52562222 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:52562427 original size:47 final size:47
Alignment explanation
Indices: 52562340--52562838 Score: 685
Period size: 47 Copynumber: 10.4 Consensus size: 47
52562330 CCTTTCGGGA
* * * * * * * *
52562340 CTTATCACATTTATGCACTTTCACATCCATTACGTTGGCCACTCGGTC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGG-C
*
52562388 C-TGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
52562434 CTTATCACATATATACACTTTCACATTCATCGCATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
52562481 CATATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
52562528 CTTATCACACATATACACTTTCACATTCATCACGTCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
52562575 CTTATCACACATATACACTTTCACATTCATCACGTCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
52562622 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
52562669 CTTATTACATATATACATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTA-T-CACATAT--ATACACTTTCACATTCATCACATCGGCCATTAGGC
52562720 CTTATCACATATATACATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATAT--ATACACTTTCACATTCATCACATCGGCCATTAGGC
52562771 CTTATCACATATACATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATAT--ATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
52562820 CTTATTACATACATACACT
1 CTTATCACATATATACACT
52562839 CTCTTGGCTG
Statistics
Matches: 420, Mismatches: 24, Indels: 15
0.92 0.05 0.03
Matches are distributed among these distances:
46 2 0.00
47 270 0.64
48 2 0.00
49 58 0.14
50 1 0.00
51 87 0.21
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:52566398 original size:40 final size:40
Alignment explanation
Indices: 52566353--52566540 Score: 227
Period size: 40 Copynumber: 4.8 Consensus size: 40
52566343 CGAATACACG
* * * * *
52566353 TCACCAGCATGATTGCTCTTCGGGACCTAGCCCGGACATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* * * ** * *
52566393 ACACCAGCACGAATGCTCTTCGGGGTTTAGCACGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* *
52566433 TCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
*
52566473 TCACTAGCATGAATGCTCCTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
52566513 TCACTAGCATG-ATGCTCTTC-GGACTTAG
1 TCACTAGCATGAATGCTCTTCGGGACTTAG
52566541 GTCACTTAGC
Statistics
Matches: 129, Mismatches: 19, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
38 8 0.06
39 8 0.06
40 113 0.88
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (40 bp):
TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
Found at i:52566958 original size:29 final size:29
Alignment explanation
Indices: 52566880--52566958 Score: 99
Period size: 28 Copynumber: 2.7 Consensus size: 29
52566870 CTTAATAATC
*
52566880 AACCACGCACACTTAGTGCCATGTACTTTA
1 AACC-CGCACACTTAGTGCCATGCACTTTA
*
52566910 AACTCGCA-ACTTAGTGCCATGCA-TTTCA
1 AACCCGCACACTTAGTGCCATGCACTTT-A
*
52566938 AGCCCGCACACTTAGTGCCAT
1 AACCCGCACACTTAGTGCCAT
52566959 CTCACAACCG
Statistics
Matches: 43, Mismatches: 4, Indels: 5
0.83 0.08 0.10
Matches are distributed among these distances:
27 3 0.07
28 21 0.49
29 16 0.37
30 3 0.07
ACGTcount: A:0.28, C:0.32, G:0.15, T:0.25
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCACTTTA
Found at i:52567057 original size:43 final size:43
Alignment explanation
Indices: 52566939--52567081 Score: 265
Period size: 43 Copynumber: 3.4 Consensus size: 43
52566929 TGCATTTCAA
52566939 GCCCGCACACTTAGTGCC-ATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
52566981 GCCCGCACACTT-GTG-CAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
52567022 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
52567065 GCCCGCACACTTAGTGC
1 GCCCGCACACTTAGTGC
52567082 TGAAAACCAA
Statistics
Matches: 98, Mismatches: 0, Indels: 5
0.95 0.00 0.05
Matches are distributed among these distances:
40 1 0.01
41 39 0.40
42 15 0.15
43 43 0.44
ACGTcount: A:0.26, C:0.36, G:0.15, T:0.23
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
Found at i:52568995 original size:36 final size:37
Alignment explanation
Indices: 52568923--52569000 Score: 122
Period size: 36 Copynumber: 2.1 Consensus size: 37
52568913 TTATTACGAA
* *
52568923 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCTCCACACGAAGTCATCGG
*
52568960 GTCTTACCCGGACAAAATC-CCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCTCCACACGAAGTCATCGG
52568996 GTCTT
1 GTCTT
52569001 TAGAGCCGGA
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
36 20 0.53
37 18 0.47
ACGTcount: A:0.26, C:0.31, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCTCCACACGAAGTCATCGG
Found at i:52569297 original size:47 final size:47
Alignment explanation
Indices: 52569164--52569551 Score: 458
Period size: 47 Copynumber: 8.2 Consensus size: 47
52569154 CACGGCGCTG
*
52569164 TCACATATATACAC-TTCACATTCATCACATCGGCCATTAGG-CTTA
1 TCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTA
*
52569209 TCACATATATACACTTTCACATTCA-CGCATCGGC-ATTAGGCCTTA
1 TCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTA
*
52569254 TCACATATATACACTTTCACATTAATCACATCGGCTATTAGGCCTTA
1 TCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTA
*
52569301 TCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTA
1 TCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTA
*
52569348 TCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTA
1 TCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTA
* *
52569395 TTACATATATCATACAC-TTCACATTCATCACATCGGCCATTAGGCCTTA
1 -T-CACATAT-ATACACTTTCACATTCATCACATCGGCTATTAGGCCTTA
* * * *
52569444 TCAC--ACATA-ACTTTGCA-ATTTATCACGTCGGCTATCTGAGGCCCTAA
1 TCACATATATACACTTT-CACATTCATCACATCGGCTAT-T-AGG-CCTTA
52569491 T-ACATCAATGATTACACTTTCACATTCAT-ACAGTCGGC-ATTAGGCCTCTA
1 TCACAT--AT-A-TACACTTTCACATTCATCACA-TCGGCTATTAGGCCT-TA
52569541 TACTACATATA
1 T-C-ACATATA
52569552 ATACTATACT
Statistics
Matches: 300, Mismatches: 18, Indels: 45
0.83 0.05 0.12
Matches are distributed among these distances:
43 2 0.01
44 26 0.09
45 54 0.18
46 23 0.08
47 110 0.37
48 2 0.01
49 39 0.13
50 13 0.04
51 4 0.01
52 8 0.03
53 19 0.06
ACGTcount: A:0.30, C:0.28, G:0.10, T:0.32
Consensus pattern (47 bp):
TCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTA
Found at i:52569441 original size:96 final size:93
Alignment explanation
Indices: 52569164--52569551 Score: 465
Period size: 96 Copynumber: 4.1 Consensus size: 93
52569154 CACGGCGCTG
* *
52569164 TCACATATATACAC-TTCACATTCATCACATCGGCCATTAGG-CTTATCACATATATACACTTTC
1 TCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTC
*
52569227 ACATTCA-CGCATCGGCATTAGGCCTTA
66 ACATTCATCACATCGGCATTAGGCCTTA
* * *
52569254 TCACATATATACACTTTCACATTAATCACATCGGCTATTAGGCCTTATCACACATATACACTTTC
1 TCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTC
52569319 ACATTCATCACATCGGCTATTAGGCCTTA
66 ACATTCATCACATCGGC-ATTAGGCCTTA
*
52569348 TCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATTACATATATCATACAC-
1 TCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTA-T-CACATAT-ATACACT
52569412 TTCACATTCATCACATCGGCCATTAGGCCTTA
63 TTCACATTCATCACATCGG-CATTAGGCCTTA
* * *
52569444 TCACAC--ATA-ACTTTGCA-ATTTATCACGTCGGCTATCTGAGGCCCTAAT-ACATCAATGATT
1 TCACACATATACACTTT-CACATTCATCACATCGGCTAT-T-AGG-CCTTATCACAT--AT-A-T
52569504 ACACTTTCACATTCAT-ACAGTCGGCATTAGGCCTCTA
58 ACACTTTCACATTCATCACA-TCGGCATTAGGCCT-TA
52569541 T-ACTACATATA
1 TCAC-ACATATA
52569552 ATACTATACT
Statistics
Matches: 264, Mismatches: 13, Indels: 33
0.85 0.04 0.11
Matches are distributed among these distances:
90 14 0.05
91 25 0.09
92 28 0.11
93 32 0.12
94 62 0.23
95 8 0.03
96 65 0.25
97 27 0.10
99 3 0.01
ACGTcount: A:0.30, C:0.28, G:0.10, T:0.32
Consensus pattern (93 bp):
TCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTC
ACATTCATCACATCGGCATTAGGCCTTA
Found at i:52579644 original size:44 final size:42
Alignment explanation
Indices: 52579547--52579708 Score: 114
Period size: 44 Copynumber: 3.8 Consensus size: 42
52579537 AAGAATTTCA
* * * * *
52579547 GATCTTATCTCCCTGAGATTACAGCGGAGTAGATTGAAGCTG
1 GATCTTATCTCCCTGAGATTACAGTGGAGCAGATTAAACCAG
* *
52579589 GTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAACCAAG
1 G--ATCTTATCTCCCTGAGATTACAGTGGAGCAGATT-AAACC-AG
* * * *** *
52579635 GATCTTATCTCTCTGA-AGTTACAGTAGAGTAGATCGCACTAG
1 GATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTAAACCAG
*
52579677 G-TCTTAT-TCCCCTGAGATTACAGTGGAACAGA
1 GATCTTATCT-CCCTGAGATTACAGTGGAGCAGA
52579709 CCGAAGAATT
Statistics
Matches: 93, Mismatches: 20, Indels: 15
0.73 0.16 0.12
Matches are distributed among these distances:
40 1 0.01
41 23 0.25
42 5 0.05
43 3 0.03
44 56 0.60
45 3 0.03
46 2 0.02
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.28
Consensus pattern (42 bp):
GATCTTATCTCCCTGAGATTACAGTGGAGCAGATTAAACCAG
Found at i:52580008 original size:44 final size:44
Alignment explanation
Indices: 52579866--52580261 Score: 138
Period size: 44 Copynumber: 8.9 Consensus size: 44
52579856 GAAGCCAGAG
* ** ** *
52579866 ATCTTATCTCCCTGAGATTACAGTGGAACAGACCGAAGAAT-TTCAA
1 ATCTTATCTCCCTGAGATTACAGCGGAGTAGATTGAA-AATAGT--A
*
52579912 ATCTTATCTCCCTGAGATTACAGCGGAGTAGATTGAAGATAGTA
1 ATCTTATCTCCCTGAGATTACAGCGGAGTAGATTGAAAATAGTA
* * * * *
52579956 ATCCTATCTGCCTGAGATTACAGGGGAGTGGATT-AAAATAAAG-G
1 ATCTTATCTCCCTGAGATTACAGCGGAGTAGATTGAAAAT--AGTA
** * ** * *
52580000 ATCTTATCTCTTTGAGGTTACAGTAGAGTAGA-TCACATCAGATTGAAGCCAGA
1 ATCTTATCTCCCTGAGATTACAGCGGAGTAGATTGA-A--A-A-T--AG---TA
** ** *
52580053 GATCTTATCTCCCTGAGATTACAATGGAACAGATTGAAGATAGTA
1 -ATCTTATCTCCCTGAGATTACAGCGGAGTAGATTGAAAATAGTA
* * * * * * **
52580098 ATCCTATCTCCTTGAGACTACAGTGGAGCAGATT----A-GGGG
1 ATCTTATCTCCCTGAGATTACAGCGGAGTAGATTGAAAATAGTA
* ** * *
52580137 ATCTTATCTCTCTGA-AGTTACAGTAGAGTAGATCG--TATCAG--
1 ATCTTATCTCCCTGAGA-TTACAGCGGAGTAGATTGAAAAT-AGTA
* *
52580178 GTCTTATCTCCCTGAGATTACAGCGGAGTAGATTGAAGATAGTA
1 ATCTTATCTCCCTGAGATTACAGCGGAGTAGATTGAAAATAGTA
* * * *
52580222 ATCCTATCTGCCTGAGATTACAGTGGAGTGGATT-AAAATA
1 ATCTTATCTCCCTGAGATTACAGCGGAGTAGATTGAAAATA
52580262 AAGGATCTTA
Statistics
Matches: 264, Mismatches: 61, Indels: 53
0.70 0.16 0.14
Matches are distributed among these distances:
38 1 0.00
39 26 0.10
40 1 0.00
41 29 0.11
42 3 0.01
43 13 0.05
44 114 0.43
45 6 0.02
46 33 0.12
47 1 0.00
48 3 0.01
49 4 0.02
50 1 0.00
51 1 0.00
54 26 0.10
55 2 0.01
ACGTcount: A:0.32, C:0.17, G:0.22, T:0.29
Consensus pattern (44 bp):
ATCTTATCTCCCTGAGATTACAGCGGAGTAGATTGAAAATAGTA
Found at i:52580291 original size:124 final size:120
Alignment explanation
Indices: 52580055--52580321 Score: 275
Period size: 124 Copynumber: 2.1 Consensus size: 120
52580045 AAGCCAGAGA
*
52580055 TCTTATCTCCCTGAGATTACAATGGAACAGATTGAAGATAGTAATCCTATCTCCTTGAGACTACA
1 TCTTATCTCCCTGAGATTACAACGGAACAGATTGAAGATAGTAATCCTATCTCCTTGAGACTACA
**
52580120 GTGGAGCAGATTAGGGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGTATCAGG
66 GTGGAGCAGATTAAAGGATCTTATCTCTCTGAAGTTAC---A-AGTAGATCGTATCAGG
* ** *
52580179 TCTTATCTCCCTGAGATTACAGCGGAGTAGATTGAAGATAGTAATCCTATCTGCC-TGAGATTAC
1 TCTTATCTCCCTGAGATTACAACGGAACAGATTGAAGATAGTAATCCTATCT-CCTTGAGACTAC
** * * * *
52580243 AGTGGAGTGGATTAAAATAAAGGATCTTATCTCTTTGAGGTTACAGTAGAGGAGATCGTGTCAGG
65 AGTGGAGCAGA-T----TAAAGGATCTTATCTCTCTGAAGTTAC---A-AGTAGATCGTATCAGG
*
52580308 TCTTATCCCCCTGA
1 TCTTATCTCCCTGA
52580322 TGTTGCAGTG
Statistics
Matches: 123, Mismatches: 14, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
124 65 0.53
125 3 0.02
129 55 0.45
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.30
Consensus pattern (120 bp):
TCTTATCTCCCTGAGATTACAACGGAACAGATTGAAGATAGTAATCCTATCTCCTTGAGACTACA
GTGGAGCAGATTAAAGGATCTTATCTCTCTGAAGTTACAAGTAGATCGTATCAGG
Found at i:52581808 original size:12 final size:12
Alignment explanation
Indices: 52581779--52581813 Score: 52
Period size: 12 Copynumber: 2.8 Consensus size: 12
52581769 GAATTAGTCC
*
52581779 TATTATTATTAT
1 TATTACTATTAT
52581791 TATTACTATTAT
1 TATTACTATTAT
52581803 TATTACCTATT
1 TATTA-CTATT
52581814 TATTTATATT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
12 16 0.76
13 5 0.24
ACGTcount: A:0.31, C:0.09, G:0.00, T:0.60
Consensus pattern (12 bp):
TATTACTATTAT
Found at i:52585852 original size:85 final size:85
Alignment explanation
Indices: 52585696--52585857 Score: 202
Period size: 85 Copynumber: 1.9 Consensus size: 85
52585686 ACCACCACTG
* *
52585696 ATTTACAGTTACTGCTACTTGTTGTAGGTGCACAACATATTTGCAAATTAAACAAACTACTACTA
1 ATTTACAGTTACTGCCACTTGTTGTAGGTGCACAACATATTTGCAAATTAAAAAAACTACTACTA
* *
52585761 GGTTCATGATCGTACAATAT
66 GATTCATAATCGTACAATAT
* * * * *
52585781 ATTTGCAGTTACTGCCACTTGTTGT-GAGTGTACAACGTATTTGCAGATTAAAAAAATTGAC-AC
1 ATTTACAGTTACTGCCACTTGTTGTAG-GTGCACAACATATTTGCAAATTAAAAAAACT-ACTAC
*
52585844 TTGATTCATAATCG
64 TAGATTCATAATCG
52585858 AACCACATAT
Statistics
Matches: 65, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
84 1 0.02
85 62 0.95
86 2 0.03
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.35
Consensus pattern (85 bp):
ATTTACAGTTACTGCCACTTGTTGTAGGTGCACAACATATTTGCAAATTAAAAAAACTACTACTA
GATTCATAATCGTACAATAT
Found at i:52587039 original size:63 final size:65
Alignment explanation
Indices: 52586906--52587073 Score: 157
Period size: 63 Copynumber: 2.6 Consensus size: 65
52586896 CAGGAGTCAA
* * * * * * **
52586906 ACGGGTAAAACACACGGGCGTGTGTTTAGGTCGTGTAACTCATTGAGTTTGTATTAGAGGCACAT
1 ACGGGTGAGACACACGGGCGTGTGTCTAAGCCGTGTAACTCATTGAGCTCCTATTAGAGGCACAT
*
52586971 A--GGTGAGACACACGGGTGTGTGTCTAAGCCGTGTAACTC-TCTGAGCTCCTATTAGA-G-ACA
1 ACGGGTGAGACACACGGGCGTGTGTCTAAGCCGTGTAACTCAT-TGAGCTCCTATTAGAGGCACA
52587031 T
65 T
* * * * * *
52587032 ACGGGTGAGAAACATGAGCGTGTGTCCAAGCTGTGTGACTCA
1 ACGGGTGAGACACACGGGCGTGTGTCTAAGCCGTGTAACTCA
52587074 CTAAGTTTAC
Statistics
Matches: 83, Mismatches: 16, Indels: 9
0.77 0.15 0.08
Matches are distributed among these distances:
61 5 0.06
62 2 0.02
63 75 0.90
65 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.30, T:0.26
Consensus pattern (65 bp):
ACGGGTGAGACACACGGGCGTGTGTCTAAGCCGTGTAACTCATTGAGCTCCTATTAGAGGCACAT
Found at i:52594144 original size:40 final size:40
Alignment explanation
Indices: 52594093--52594487 Score: 569
Period size: 40 Copynumber: 9.8 Consensus size: 40
52594083 ATTTGAATTT
* * * *
52594093 TATCCGGGCTAAGTCCCGAAGGCAATTGTGCTAG-TGATTT
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-TA
52594133 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATA
*
52594173 TATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATA
*
52594213 TATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATATA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG--ATA
* *
52594255 TATTCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATA
*
52594295 TATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATA
*
52594335 TATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATATA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG--ATA
* *
52594377 TATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATA
* *
52594417 TATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATA
* * *
52594457 T-GCTCGGGTTAAGACCCGAAGGCAATTGTGC
1 TATC-CGGGCTAAGACCCGAAGGCATTTGTGC
52594488 TTGTGGTAAT
Statistics
Matches: 331, Mismatches: 18, Indels: 12
0.92 0.05 0.03
Matches are distributed among these distances:
39 1 0.00
40 251 0.76
41 3 0.01
42 76 0.23
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATA
Found at i:52594308 original size:122 final size:122
Alignment explanation
Indices: 52594093--52594487 Score: 616
Period size: 122 Copynumber: 3.3 Consensus size: 122
52594083 ATTTGAATTT
* * *
52594093 TATCCGGGCTAAGTCCCGAAGGCAATTGTGCTAG-TGAT-TTTATCCGGGCTAAGACCCGAAGGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTGATATATATCCGGGCTAAGACCCGAAGGC
52594156 ATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATA
66 ATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATA
* * * *
52594213 TATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATATATATTCGGGCTAAGACCCGCAGGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTGATATATATCCGGGCTAAGACCCGAAGGC
52594278 ATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATA
66 ATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATA
* *
52594335 TATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATATATATCCGGGCTAAGACCCGAAGGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTGATATATATCCGGGCTAAGACCCGAAGGC
* * * * *
52594400 AATTGTGCAAGTTGATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTA
66 ATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATA
* *
52594457 T-GCTCGGGTTAAGACCCGAAGGCAATTGTGC
1 TATC-CGGGCTAAGACCCGAAGGCAATTGTGC
52594488 TTGTGGTAAT
Statistics
Matches: 254, Mismatches: 18, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
120 30 0.12
121 5 0.02
122 219 0.86
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (122 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTGATATATATCCGGGCTAAGACCCGAAGGC
ATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATA
Found at i:52594364 original size:162 final size:161
Alignment explanation
Indices: 52594093--52594487 Score: 589
Period size: 162 Copynumber: 2.4 Consensus size: 161
52594083 ATTTGAATTT
* * * *
52594093 TATCCGGGCTAAGTCCCGAAGGCAATTGTGCTAG-TGATTTTATCCGGGCTAAGACCCGAAGGCA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-TATATCCGGGCTAAGACCCGAAGGCA
52594157 TTTGTGCGAGTTGATATATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTG-ATATATCCGGG
65 TTTGTGCGAGTTGATATATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGAATATATCCGGG
* * *
52594221 CTAAGACCCGCAGGCATTTGTGCGAGTTGATATA
130 CTAAGACCCGAAGGCAATTGTGCAAGTTG--ATA
* * *
52594255 TATTCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGCAGGCAT
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCAT
52594320 TTGTGCGAGTTGATATATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATATATATCCGGG
66 TTGTGCGAGTTGATATATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGA-ATATATCCGGG
52594385 CTAAGACCCGAAGGCAATTGTGCAAGTTGATA
130 CTAAGACCCGAAGGCAATTGTGCAAGTTGATA
* * * *
52594417 TATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTAT-GCTCGGGTTAAGACCCGAAGGCA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATATATC-CGGGCTAAGACCCGAAGGCA
*
52594481 ATTGTGC
65 TTTGTGC
52594488 TTGTGGTAAT
Statistics
Matches: 211, Mismatches: 18, Indels: 8
0.89 0.08 0.03
Matches are distributed among these distances:
161 1 0.00
162 170 0.81
163 3 0.01
164 37 0.18
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (161 bp):
TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCAT
TTGTGCGAGTTGATATATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGAATATATCCGGGC
TAAGACCCGAAGGCAATTGTGCAAGTTGATA
Found at i:52602925 original size:40 final size:40
Alignment explanation
Indices: 52602842--52603235 Score: 567
Period size: 40 Copynumber: 9.8 Consensus size: 40
52602832 ATTTGAATTT
* * * * *
52602842 TATCCGGGCTAAGTCCCG-AGACAATTGTGCTAG-TGATTT
1 TATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGA-TA
* *
52602881 TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATA
1 TATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATA
52602921 TATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATA
1 TATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATA
52602961 TATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATATA
1 TATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTG--ATA
52603003 TATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATA
1 TATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATA
52603043 TATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATA
1 TATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATA
52603083 TATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATATA
1 TATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTG--ATA
* * *
52603125 TATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATA
1 TATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATA
* * *
52603165 TATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTA
1 TATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATA
** * * *
52603205 TGCCCGGGTTAAGACCCGAAGGCAATTGTGC
1 TATCCGGGCTAAGACCCGCAGGCATTTGTGC
52603236 TTGTGGTAAT
Statistics
Matches: 330, Mismatches: 19, Indels: 11
0.92 0.05 0.03
Matches are distributed among these distances:
39 17 0.05
40 233 0.71
41 3 0.01
42 77 0.23
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATA
Found at i:52603040 original size:82 final size:80
Alignment explanation
Indices: 52602842--52603235 Score: 576
Period size: 82 Copynumber: 4.9 Consensus size: 80
52602832 ATTTGAATTT
* * * * *
52602842 TATCCGGGCTAAGTCCCG-AGACAATTGTGCTAG-TGATTTTATCCGGGCTAAGACCCGAAGGCA
1 TATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGA-TATATCCGGGCTAAGACCCGAAGGCA
52602905 TTTGTGCAAGTTGATA
65 TTTGTGCAAGTTGATA
*
52602921 TATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGCAGGCAT
1 TATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCAT
*
52602986 TTGTGCGAGTTGATATA
66 TTGTGCAAGTTG--ATA
*
52603003 TATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGCAGGCAT
1 TATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCAT
*
52603068 TTGTGCGAGTTGATA
66 TTGTGCAAGTTGATA
52603083 TATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATATATATCCGGGCTAAGACCCGAAGGC
1 TATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTG--ATATATCCGGGCTAAGACCCGAAGGC
*
52603148 AATTGTGCAAGTTGATA
64 ATTTGTGCAAGTTGATA
* * * ** * *
52603165 TATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTATGCCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCAT
52603230 TTGTGC
66 TTGTGC
52603236 TTGTGGTAAT
Statistics
Matches: 293, Mismatches: 16, Indels: 11
0.92 0.05 0.03
Matches are distributed among these distances:
79 17 0.06
80 118 0.40
81 3 0.01
82 155 0.53
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCAT
TTGTGCAAGTTGATA
Found at i:52603098 original size:122 final size:122
Alignment explanation
Indices: 52602842--52603235 Score: 623
Period size: 122 Copynumber: 3.3 Consensus size: 122
52602832 ATTTGAATTT
* * * *
52602842 TATCCGGGCTAAGTCCCG-AGACAATTGTGCTAG-TGAT-TTTATCCGGGCTAAGACCCGAAGGC
1 TATCCGGGCTAAGACCCGCAGGCAATTGTGCGAGTTGATATATATCCGGGCTAAGACCCGAAGGC
52602904 ATTTGTGCAAGTTGATATATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATA
66 ATTTGTGCAAGTTGATATATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATA
* *
52602961 TATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATATATATCCGGGCTAAGACCCGCAGGC
1 TATCCGGGCTAAGACCCGCAGGCAATTGTGCGAGTTGATATATATCCGGGCTAAGACCCGAAGGC
*
52603026 ATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATA
66 ATTTGTGCAAGTTGATATATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATA
*
52603083 TATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATATATATCCGGGCTAAGACCCGAAGGC
1 TATCCGGGCTAAGACCCGCAGGCAATTGTGCGAGTTGATATATATCCGGGCTAAGACCCGAAGGC
* * * *
52603148 AATTGTGCAAGTTGATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTA
66 ATTTGTGCAAGTTGATATATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATA
** * *
52603205 TGCCCGGGTTAAGACCCGAAGGCAATTGTGC
1 TATCCGGGCTAAGACCCGCAGGCAATTGTGC
52603236 TTGTGGTAAT
Statistics
Matches: 254, Mismatches: 18, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
119 17 0.07
120 12 0.05
121 4 0.02
122 221 0.87
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (122 bp):
TATCCGGGCTAAGACCCGCAGGCAATTGTGCGAGTTGATATATATCCGGGCTAAGACCCGAAGGC
ATTTGTGCAAGTTGATATATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATA
Found at i:52604788 original size:20 final size:19
Alignment explanation
Indices: 52604744--52604788 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
52604734 AAAAGGCCGA
*
52604744 ACACACTTTCCATTTACAC
1 ACACATTTTCCATTTACAC
* *
52604763 ATACATTTTTCATTTACATC
1 ACACATTTTCCATTTACA-C
52604783 ACACAT
1 ACACAT
52604789 GATTTGCAAC
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
19 15 0.71
20 6 0.29
ACGTcount: A:0.33, C:0.29, G:0.00, T:0.38
Consensus pattern (19 bp):
ACACATTTTCCATTTACAC
Found at i:52607715 original size:21 final size:22
Alignment explanation
Indices: 52607665--52607719 Score: 62
Period size: 22 Copynumber: 2.6 Consensus size: 22
52607655 TAAAAATGTC
*
52607665 AAATGTTATAAAATTTATTTTAA
1 AAATATTATAAAATTTA-TTTAA
*
52607688 AAA-ATTATAAGATTTA-TTAA
1 AAATATTATAAAATTTATTTAA
52607708 AAATATTA-AAAA
1 AAATATTATAAAA
52607720 CTTAAAAAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
20 10 0.36
21 4 0.14
22 11 0.39
23 3 0.11
ACGTcount: A:0.56, C:0.00, G:0.04, T:0.40
Consensus pattern (22 bp):
AAATATTATAAAATTTATTTAA
Found at i:52610180 original size:15 final size:15
Alignment explanation
Indices: 52610160--52610188 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
52610150 TGTAAAGAAA
52610160 AATGAATATTGTAAC
1 AATGAATATTGTAAC
52610175 AATGAATATTGTAA
1 AATGAATATTGTAA
52610189 AAATCTTAGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.48, C:0.03, G:0.14, T:0.34
Consensus pattern (15 bp):
AATGAATATTGTAAC
Found at i:52623295 original size:6 final size:7
Alignment explanation
Indices: 52623277--52623304 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
52623267 AAAATTTAAA
52623277 ATTTTTT
1 ATTTTTT
52623284 ATTTTTT
1 ATTTTTT
52623291 ATTTTTT
1 ATTTTTT
52623298 ATTTTTT
1 ATTTTTT
52623305 TTAAGACCAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86
Consensus pattern (7 bp):
ATTTTTT
Found at i:52623319 original size:17 final size:16
Alignment explanation
Indices: 52623298--52623332 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
52623288 TTTATTTTTT
52623298 ATTTTT-TTTAAGACCA
1 ATTTTTGTTT-AGACCA
52623314 ATTTTTGTTTAGACCA
1 ATTTTTGTTTAGACCA
52623330 ATT
1 ATT
52623333 ACAAATAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 15 0.83
17 3 0.17
ACGTcount: A:0.29, C:0.11, G:0.09, T:0.51
Consensus pattern (16 bp):
ATTTTTGTTTAGACCA
Found at i:52623889 original size:15 final size:15
Alignment explanation
Indices: 52623843--52623896 Score: 90
Period size: 15 Copynumber: 3.5 Consensus size: 15
52623833 TTTTTATGGT
52623843 TTTTTTTTGCTGGAAA
1 TTTTTTTTGCTGG-AA
*
52623859 GTTTTTTTGCTGGAA
1 TTTTTTTTGCTGGAA
52623874 TTTTTTTTGCTGGAA
1 TTTTTTTTGCTGGAA
52623889 TTTTTTTT
1 TTTTTTTT
52623897 TTGCTCTTTT
Statistics
Matches: 36, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
15 24 0.67
16 12 0.33
ACGTcount: A:0.13, C:0.06, G:0.19, T:0.63
Consensus pattern (15 bp):
TTTTTTTTGCTGGAA
Found at i:52623893 original size:16 final size:16
Alignment explanation
Indices: 52623842--52623897 Score: 87
Period size: 16 Copynumber: 3.6 Consensus size: 16
52623832 CTTTTTATGG
52623842 TTTTTTTTTGCTGGAA
1 TTTTTTTTTGCTGGAA
**
52623858 AGTTTTTTTGCTGGAA
1 TTTTTTTTTGCTGGAA
52623874 -TTTTTTTTGCTGGAA
1 TTTTTTTTTGCTGGAA
52623889 TTTTTTTTT
1 TTTTTTTTT
52623898 TGCTCTTTTT
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
15 14 0.39
16 22 0.61
ACGTcount: A:0.12, C:0.05, G:0.18, T:0.64
Consensus pattern (16 bp):
TTTTTTTTTGCTGGAA
Found at i:52624151 original size:29 final size:28
Alignment explanation
Indices: 52624105--52624205 Score: 76
Period size: 29 Copynumber: 3.4 Consensus size: 28
52624095 TTCTAGGGCT
*
52624105 AAATGTAATTTTTAGAAAATTTAGGGTTA
1 AAATGTAA-TTTAAGAAAATTTAGGGTTA
* * *
52624134 AAATGTAATTTAAGGAAAGTTTAAGGTTCT
1 AAATGTAATTTAA-GAAAATTTAGGGTT-A
* * *
52624164 AAGTGAAATTTAAAGAAAAGTTTAGGGGTCA
1 AAATGTAATTT-AAGAAAA-TTTA-GGGTTA
*
52624195 AAATGCAATTT
1 AAATGTAATTT
52624206 TTTATTTTTT
Statistics
Matches: 55, Mismatches: 12, Indels: 8
0.73 0.16 0.11
Matches are distributed among these distances:
28 4 0.07
29 20 0.36
30 13 0.24
31 15 0.27
32 3 0.05
ACGTcount: A:0.43, C:0.03, G:0.20, T:0.35
Consensus pattern (28 bp):
AAATGTAATTTAAGAAAATTTAGGGTTA
Found at i:52624205 original size:31 final size:29
Alignment explanation
Indices: 52624118--52624205 Score: 79
Period size: 31 Copynumber: 3.0 Consensus size: 29
52624108 TGTAATTTTT
* *
52624118 AGAAAA-TTTAGGGTTAAAATGTAATTTA
1 AGAAAAGTTTAGGGTCAAAATGAAATTTA
* * * *
52624146 AGGAAAGTTTAAGGTTCTAAGTGAAATTTAA
1 AGAAAAGTTT-AGGGTCAAAATGAAATTT-A
*
52624177 AGAAAAGTTTAGGGGTCAAAATGCAATTT
1 AGAAAAGTTTA-GGGTCAAAATGAAATTT
52624206 TTTATTTTTT
Statistics
Matches: 45, Mismatches: 11, Indels: 5
0.74 0.18 0.08
Matches are distributed among these distances:
28 5 0.11
29 3 0.07
30 14 0.31
31 23 0.51
ACGTcount: A:0.43, C:0.03, G:0.22, T:0.32
Consensus pattern (29 bp):
AGAAAAGTTTAGGGTCAAAATGAAATTTA
Found at i:52624796 original size:72 final size:72
Alignment explanation
Indices: 52624462--52625214 Score: 878
Period size: 72 Copynumber: 10.1 Consensus size: 72
52624452 AAAAGCCAAA
** * * ** * *
52624462 AAATTGAAAATACCTCAGTGTGTGACCTGAGGCTTAACTCACCTCTCGCAATACGAGTTGATTTT
1 AAATTGAAAATACCTCAACGTGT--CTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA--AT
*
52624527 TTTGACAACAG
62 TTTGAAAACAG
* * * ** *
52624538 AAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
1 AAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA----AT
* *
52624603 TTTGAAAGATAA
62 TTTGAAA-ACAG
* * * * *
52624615 AAATTGAAAATACCTCAGCATGTCTTAAGGCTCAACTCATTTCTCACAATATGAGTTGATTTTTC
1 AAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA-----A
52624680 TTTTGAAAAACAG
61 TTTTG-AAAACAG
* * * *
52624693 AAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAGTATAAGTTGAATTTTG
1 AAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTG
*
52624758 AAAATAG
66 AAAACAG
* * * *
52624765 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTAATTTCTTGCACTATGAGTTGAATTTTG
1 AAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTG
52624830 AAAACAG
66 AAAACAG
52624837 AAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTG
1 AAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTG
52624902 AAAACAG
66 AAAACAG
*
52624909 AAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTG
1 AAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTG
52624974 AAAAACATAAATTGAACAG
66 ---------AA---AACAG
** *
52624993 AAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
1 AAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA-ATTTT
52625058 GAAAAGCAG
65 GAAAA-CAG
* *
52625067 AAATTGAAAATACCTCAATGTGTCTTGAGGCTCGACTCATTTCTCGCAATATGAGTTGAATTTTG
1 AAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTG
52625132 AAAACAG
66 AAAACAG
* *
52625139 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTTGCAATATGAGTTGAATTTTT
1 AAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAA-TTTT
52625204 G-AAACAG
65 GAAAACAG
52625211 AAAT
1 AAAT
52625215 AAAAGCATCA
Statistics
Matches: 610, Mismatches: 47, Indels: 44
0.87 0.07 0.06
Matches are distributed among these distances:
72 271 0.44
73 21 0.03
74 92 0.15
76 33 0.05
77 54 0.09
78 66 0.11
79 3 0.00
81 2 0.00
84 62 0.10
85 6 0.01
ACGTcount: A:0.33, C:0.18, G:0.16, T:0.32
Consensus pattern (72 bp):
AAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTG
AAAACAG
Found at i:52625107 original size:230 final size:229
Alignment explanation
Indices: 52624763--52625207 Score: 766
Period size: 230 Copynumber: 1.9 Consensus size: 229
52624753 TTTTGAAAAT
* ** * *
52624763 AGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTAATTTCTTGCACTATGAGTTGAATTT
1 AGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTAACCTCTCGCAATATGAGTTGAATTT
52624828 TGAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGT
66 TGAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGT
52624893 TGAATTTTGAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAA
131 TGAATTTTGAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAA
52624958 TATGAGTTG-ATTTTTGAAAAACATAAATTGAAC
196 TATGAGTTGAATTTTTGAAAAACATAAATTGAAC
* *
52624991 AGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 AGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTAACCTCTCGCAATATGAGTTGA-ATT
* *
52625056 TTGAAAAGCAGAAATTGAAAATACCTCAATGTGTCTTGAGGCTCGACTCATTTCTCGCAATATGA
65 TTGAAAA-CAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGA
* *
52625121 GTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTTGC
129 GTTGAATTTTGAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGC
52625186 AATATGAGTTGAATTTTTGAAA
194 AATATGAGTTGAATTTTTGAAA
52625208 CAGAAATAAA
Statistics
Matches: 203, Mismatches: 11, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
228 55 0.27
229 9 0.04
230 129 0.64
231 10 0.05
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.32
Consensus pattern (229 bp):
AGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTAACCTCTCGCAATATGAGTTGAATTT
TGAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGT
TGAATTTTGAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAA
TATGAGTTGAATTTTTGAAAAACATAAATTGAAC
Found at i:52635950 original size:14 final size:14
Alignment explanation
Indices: 52635931--52635983 Score: 52
Period size: 14 Copynumber: 3.6 Consensus size: 14
52635921 TGAATGTTCC
**
52635931 TTTTTTTGGTTTTT
1 TTTTTTTGGAATTT
52635945 TTTTTTGCTGGAAATTT
1 TTTTTT--TGG-AATTT
*
52635962 TTTTGTTGGAATTT
1 TTTTTTTGGAATTT
52635976 TTTTTTTG
1 TTTTTTTG
52635984 CTTTTTTTTC
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
14 18 0.56
15 3 0.09
16 3 0.09
17 8 0.25
ACGTcount: A:0.09, C:0.02, G:0.17, T:0.72
Consensus pattern (14 bp):
TTTTTTTGGAATTT
Found at i:52635980 original size:15 final size:15
Alignment explanation
Indices: 52635943--52635980 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
52635933 TTTTTGGTTT
52635943 TTTTTTTTGCTGGAA
1 TTTTTTTTGCTGGAA
* *
52635958 ATTTTTTTGTTGGAA
1 TTTTTTTTGCTGGAA
52635973 TTTTTTTT
1 TTTTTTTT
52635981 TTGCTTTTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.13, C:0.03, G:0.16, T:0.68
Consensus pattern (15 bp):
TTTTTTTTGCTGGAA
Found at i:52636242 original size:29 final size:29
Alignment explanation
Indices: 52636196--52636296 Score: 105
Period size: 31 Copynumber: 3.4 Consensus size: 29
52636186 TTCTGGGGCT
*
52636196 AAATGTAATTTTTAGAAAATTTA-GGGTTA
1 AAATGTAA-TTTAAGAAAATTTAGGGGTTA
* *
52636225 AAATGTAATTTAAGGAAAGTTTAGGGGTTT
1 AAATGTAATTTAA-GAAAATTTAGGGGTTA
* * *
52636255 AAGTGAAATTTAAAGAAAAGTTTAGGGGTCA
1 AAATGTAATTT-AAGAAAA-TTTAGGGGTTA
52636286 AAATGTAATTT
1 AAATGTAATTT
52636297 TTTTATTTTT
Statistics
Matches: 58, Mismatches: 10, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
28 4 0.07
29 16 0.28
30 18 0.31
31 20 0.34
ACGTcount: A:0.42, C:0.01, G:0.22, T:0.36
Consensus pattern (29 bp):
AAATGTAATTTAAGAAAATTTAGGGGTTA
Found at i:52642825 original size:47 final size:47
Alignment explanation
Indices: 52642734--52642953 Score: 175
Period size: 47 Copynumber: 4.7 Consensus size: 47
52642724 AGGGTAAGGT
** * *
52642734 GCCGATGCCATGTCTTAGACACGGTCTTACACTGGCTCAT-ATCTCAA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGACT-ATCATCTCAA
* * * * *
52642781 GTCGATGCCATATCTCAAACATGGTCTTACACTGACTATCATCTCGTA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGACTATCATCTC-AA
*
52642829 GCCGATG-CATGTCCCAGACAT-GTCTTACACT-ACCCT-TCGTCTCAA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGA--CTATCATCTCAA
* * * * ***
52642874 TGCCGATGCCATGTCCCAGACATTGTCTTACACTGGCTCTCATAATGTC
1 -GCCGATGCCATGTCCCAGACATGGTCTTACACTGACTATCAT-CTCAA
*
52642923 GCCGAT-ACATGTCCCAGACAT-GTCTTACACT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACT
52642954 AGCTCACACA
Statistics
Matches: 143, Mismatches: 20, Indels: 21
0.78 0.11 0.11
Matches are distributed among these distances:
45 2 0.01
46 35 0.24
47 79 0.55
48 26 0.18
49 1 0.01
ACGTcount: A:0.24, C:0.31, G:0.17, T:0.29
Consensus pattern (47 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGACTATCATCTCAA
Found at i:52642902 original size:94 final size:93
Alignment explanation
Indices: 52642775--52642954 Score: 245
Period size: 94 Copynumber: 1.9 Consensus size: 93
52642765 CTGGCTCATA
* * * *
52642775 TCTCAAGTCGATGCCATATCTCAAACATGGTCTTACACTGACTATCAT-CTCGTAGCCGATGCAT
1 TCTCAAGCCGATGCCATATCCCAAACATGGTCTTACACTGACTATCATAAT-GTAGCCGATACAT
52642839 GTCCCAGACATGTCTTACACTACCCTTCG
65 GTCCCAGACATGTCTTACACTACCCTTCG
* * * * * *
52642868 TCTCAATGCCGATGCCATGTCCCAGACATTGTCTTACACTGGCTCTCATAATGTCGCCGATACAT
1 TCTCAA-GCCGATGCCATATCCCAAACATGGTCTTACACTGACTATCATAATGTAGCCGATACAT
52642933 GTCCCAGACATGTCTTACACTA
65 GTCCCAGACATGTCTTACACTA
52642955 GCTCACACAC
Statistics
Matches: 75, Mismatches: 10, Indels: 3
0.85 0.11 0.03
Matches are distributed among these distances:
93 6 0.08
94 68 0.91
95 1 0.01
ACGTcount: A:0.24, C:0.31, G:0.16, T:0.29
Consensus pattern (93 bp):
TCTCAAGCCGATGCCATATCCCAAACATGGTCTTACACTGACTATCATAATGTAGCCGATACATG
TCCCAGACATGTCTTACACTACCCTTCG
Found at i:52646274 original size:28 final size:30
Alignment explanation
Indices: 52646233--52646290 Score: 84
Period size: 28 Copynumber: 2.0 Consensus size: 30
52646223 ACTTAACAAG
52646233 CAAATGCCTCTAAAATAA-AA-AAAATTAA
1 CAAATGCCTCTAAAATAATAATAAAATTAA
* *
52646261 CAAATGTCTTTAAAATAATAATAAAATTAA
1 CAAATGCCTCTAAAATAATAATAAAATTAA
52646291 TAATAAAATA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
28 16 0.62
29 2 0.08
30 8 0.31
ACGTcount: A:0.59, C:0.10, G:0.03, T:0.28
Consensus pattern (30 bp):
CAAATGCCTCTAAAATAATAATAAAATTAA
Found at i:52646293 original size:12 final size:12
Alignment explanation
Indices: 52646271--52646299 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
52646261 CAAATGTCTT
52646271 TAAAA-TAATAA
1 TAAAATTAATAA
52646282 TAAAATTAATAA
1 TAAAATTAATAA
52646294 TAAAAT
1 TAAAAT
52646300 AAGTTTTATA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 5 0.29
12 12 0.71
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (12 bp):
TAAAATTAATAA
Found at i:52646348 original size:22 final size:22
Alignment explanation
Indices: 52646323--52646365 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
52646313 TATCCAAACA
52646323 ATAACAACAAAATAGTAGCAAT
1 ATAACAACAAAATAGTAGCAAT
* **
52646345 ATAATAGTAAAATAGTAGCAA
1 ATAACAACAAAATAGTAGCAA
52646366 AATAGGGAGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.58, C:0.09, G:0.12, T:0.21
Consensus pattern (22 bp):
ATAACAACAAAATAGTAGCAAT
Found at i:52646369 original size:11 final size:11
Alignment explanation
Indices: 52646330--52646370 Score: 55
Period size: 11 Copynumber: 3.7 Consensus size: 11
52646320 ACAATAACAA
52646330 CAAAATAGTAG
1 CAAAATAGTAG
* *
52646341 CAATATAATAG
1 CAAAATAGTAG
*
52646352 TAAAATAGTAG
1 CAAAATAGTAG
52646363 CAAAATAG
1 CAAAATAG
52646371 GGAGAAAATA
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.56, C:0.07, G:0.15, T:0.22
Consensus pattern (11 bp):
CAAAATAGTAG
Found at i:52648577 original size:13 final size:13
Alignment explanation
Indices: 52648561--52648626 Score: 89
Period size: 13 Copynumber: 5.1 Consensus size: 13
52648551 TTTAAACCAA
52648561 ACTTTTCAAAAGC
1 ACTTTTCAAAAGC
*
52648574 ACTTCTCAAAAGC
1 ACTTTTCAAAAGC
* *
52648587 AATTTTTC-ACAGC
1 -ACTTTTCAAAAGC
52648600 ACTTTTCAAAAGC
1 ACTTTTCAAAAGC
52648613 ACTTTTCAAAAGC
1 ACTTTTCAAAAGC
52648626 A
1 A
52648627 TTGCCAAACT
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
12 6 0.13
13 34 0.76
14 5 0.11
ACGTcount: A:0.38, C:0.24, G:0.08, T:0.30
Consensus pattern (13 bp):
ACTTTTCAAAAGC
Found at i:52648592 original size:39 final size:39
Alignment explanation
Indices: 52648548--52648626 Score: 106
Period size: 39 Copynumber: 2.0 Consensus size: 39
52648538 TAAACACTCA
52648548 AATTTTAAACCA-AACTTTTCAAAAGCACTTCTCAAAAGC
1 AATTTTAAA-CAGAACTTTTCAAAAGCACTTCTCAAAAGC
** * *
52648587 AATTTTTCACAGCACTTTTCAAAAGCACTTTTCAAAAGC
1 AATTTTAAACAGAACTTTTCAAAAGCACTTCTCAAAAGC
52648626 A
1 A
52648627 TTGCCAAACT
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
38 2 0.06
39 33 0.94
ACGTcount: A:0.41, C:0.23, G:0.06, T:0.30
Consensus pattern (39 bp):
AATTTTAAACAGAACTTTTCAAAAGCACTTCTCAAAAGC
Found at i:52651199 original size:48 final size:48
Alignment explanation
Indices: 52651134--52651908 Score: 1388
Period size: 48 Copynumber: 16.1 Consensus size: 48
52651124 GCTGAAATTG
*
52651134 ATGTATAAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
* *
52651182 ATGTATGAGATAAGTATATGTGGTAAAGTCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
* *
52651230 ATGTATGAGATAAGTATATGTGGTCAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
*
52651278 TTGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
* *
52651326 ATGTATGAGATAAGTGTATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
52651374 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
52651422 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
52651470 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
*
52651518 ATGTATGAGATAAGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
*
52651566 ATGTATGAGATAAGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
*
52651614 ATGTATGAGATAAGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
52651662 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
*
52651710 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGTTAATGTGAAATAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-AT
*
52651760 ATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
*
52651808 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTACTGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
* *
52651856 ATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
52651904 ATGTA
1 ATGTA
52651909 GGCGATGTGT
Statistics
Matches: 702, Mismatches: 23, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
48 654 0.93
49 4 0.01
50 44 0.06
ACGTcount: A:0.36, C:0.06, G:0.27, T:0.31
Consensus pattern (48 bp):
ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
Found at i:52652163 original size:37 final size:37
Alignment explanation
Indices: 52652057--52652163 Score: 187
Period size: 37 Copynumber: 2.9 Consensus size: 37
52652047 AATTATATTT
*
52652057 CGGGTAAGACCCGATGACTACGTGTGGAGATTATGTC
1 CGGGTAAGACCCGATGACTACGTGTGGAGATTTTGTC
52652094 CGGGTAAGACCCGATGACTACGTGTGGAGATTTTGTC
1 CGGGTAAGACCCGATGACTACGTGTGGAGATTTTGTC
* *
52652131 CGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 CGGGTAAGACCCGATGACTACGTGTGGAGATTT
52652164 CATCTGAGCT
Statistics
Matches: 67, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 67 1.00
ACGTcount: A:0.23, C:0.19, G:0.32, T:0.26
Consensus pattern (37 bp):
CGGGTAAGACCCGATGACTACGTGTGGAGATTTTGTC
Found at i:52654590 original size:24 final size:24
Alignment explanation
Indices: 52654558--52654612 Score: 74
Period size: 24 Copynumber: 2.3 Consensus size: 24
52654548 ACACCTTCAT
*
52654558 ATACATATACACATGAACACATAC
1 ATACATATACACATAAACACATAC
* **
52654582 ATACTTATACACATAAACACATTT
1 ATACATATACACATAAACACATAC
52654606 ATACATA
1 ATACATA
52654613 CCTTCCACAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.49, C:0.22, G:0.02, T:0.27
Consensus pattern (24 bp):
ATACATATACACATAAACACATAC
Found at i:52656532 original size:18 final size:18
Alignment explanation
Indices: 52656511--52656577 Score: 62
Period size: 18 Copynumber: 3.6 Consensus size: 18
52656501 CCTTTAACTA
* *
52656511 AAAAAATAAAATTAATTC
1 AAAAAATAAAATAAATCC
*
52656529 AAAAATAAAAAATAAATCC
1 AAAAA-ATAAAATAAATCC
* **
52656548 AAAAGATAAAATAAATGA
1 AAAAAATAAAATAAATCC
52656566 AAAAAATGAAAA
1 AAAAAAT-AAAA
52656578 CTTTATAAAG
Statistics
Matches: 39, Mismatches: 8, Indels: 3
0.78 0.16 0.06
Matches are distributed among these distances:
18 21 0.54
19 18 0.46
ACGTcount: A:0.73, C:0.04, G:0.04, T:0.18
Consensus pattern (18 bp):
AAAAAATAAAATAAATCC
Found at i:52656540 original size:19 final size:20
Alignment explanation
Indices: 52656518--52656558 Score: 57
Period size: 19 Copynumber: 2.1 Consensus size: 20
52656508 CTAAAAAAAT
* *
52656518 AAAATTAATTCAAAA-ATAA
1 AAAATAAATCCAAAAGATAA
52656537 AAAATAAATCCAAAAGATAA
1 AAAATAAATCCAAAAGATAA
52656557 AA
1 AA
52656559 TAAATGAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 13 0.68
20 6 0.32
ACGTcount: A:0.71, C:0.07, G:0.02, T:0.20
Consensus pattern (20 bp):
AAAATAAATCCAAAAGATAA
Found at i:52661796 original size:19 final size:20
Alignment explanation
Indices: 52661767--52661805 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
52661757 CAAATTAGGC
*
52661767 TTTTCTGATGCATTTAAGGA
1 TTTTCTGATGCACTTAAGGA
52661787 TTTT-TGATGCACTTAAGGA
1 TTTTCTGATGCACTTAAGGA
52661806 GCTTTTTCTC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 14 0.78
20 4 0.22
ACGTcount: A:0.26, C:0.10, G:0.21, T:0.44
Consensus pattern (20 bp):
TTTTCTGATGCACTTAAGGA
Found at i:52665055 original size:96 final size:94
Alignment explanation
Indices: 52664935--52665430 Score: 796
Period size: 96 Copynumber: 5.2 Consensus size: 94
52664925 CGGCCAAGAC
52664935 AAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
1 AAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
52665000 AAGGCCTAATGGCCGATGTGATGAATGTG
66 AAGGCCTAATGGCCGATGTGATGAATGTG
*
52665029 AAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATATG
1 AAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATG
*
52665094 TGATAAGGCCTAATAGCCGATGTGATGAATGTG
62 TGATAAGGCCTAATGGCCGATGTGATGAATGTG
52665127 AAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTG
1 AAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTG
*
52665192 AGAAGGCCTAATGGCCGATGTGATGAATGTG
64 ATAAGGCCTAATGGCCGATGTGATGAATGTG
* *
52665223 AAAGTGTATATATGTGGTAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
1 AAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
*
52665288 AAGGCCTAATAGCCGATGTGATGAATGTG
66 AAGGCCTAATGGCCGATGTGATGAATGTG
*
52665317 AAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA-
1 AAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
* * * * * * *
52665381 CAGGGCGAGTGGCCAACGTGATGGATGTG
66 AAGGCCTAATGGCCGATGTGATGAATGTG
*
52665410 AAAGTGTATAAATGTGATAAG
1 AAAGTGTATATATGTGATAAG
52665431 TCCCGAAGGG
Statistics
Matches: 376, Mismatches: 22, Indels: 9
0.92 0.05 0.02
Matches are distributed among these distances:
93 40 0.11
94 106 0.28
96 184 0.49
98 46 0.12
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (94 bp):
AAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
AAGGCCTAATGGCCGATGTGATGAATGTG
Found at i:52665064 original size:49 final size:47
Alignment explanation
Indices: 52664935--52665430 Score: 796
Period size: 47 Copynumber: 10.4 Consensus size: 47
52664925 CGGCCAAGAC
52664935 AAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
1 AAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
52664982 AAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
1 AAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
*
52665029 AAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTG
1 AAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
*
52665078 AAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTG
1 AAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
52665127 AAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
1 AAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
*
52665174 AAAGTGTATATATATGTGAGAAGGCCTAATGGCCGATGTGATGAATGTG
1 AAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
* *
52665223 AAAGTGTATATATGTGGTAAGGCCTAATAGCCGATGTGATGAATGTG
1 AAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
*
52665270 AAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTG
1 AAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
*
52665317 AAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTG
1 AAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
* * * * * * *
52665364 AAAGTGTATATATGTGA-CAGGGCGAGTGGCCAACGTGATGGATGTG
1 AAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
*
52665410 AAAGTGTATAAATGTGATAAG
1 AAAGTGTATATATGTGATAAG
52665431 TCCCGAAGGG
Statistics
Matches: 426, Mismatches: 18, Indels: 10
0.94 0.04 0.02
Matches are distributed among these distances:
46 38 0.09
47 247 0.58
49 141 0.33
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
AAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
Found at i:52667629 original size:38 final size:38
Alignment explanation
Indices: 52667565--52667639 Score: 107
Period size: 38 Copynumber: 2.0 Consensus size: 38
52667555 AATCCGAGTT
*
52667565 TAAAGACCCGCTGACTATATGAAGAGATTATGTCCGGG
1 TAAAGACCCGATGACTATATGAAGAGATTATGTCCGGG
* *
52667603 TAAAGACCCGATGGCTATGT-ACAGAGATTATGTCCGG
1 TAAAGACCCGATGACTATATGA-AGAGATTATGTCCGG
52667640 ATTAAAATTC
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
37 1 0.03
38 32 0.97
ACGTcount: A:0.31, C:0.19, G:0.27, T:0.24
Consensus pattern (38 bp):
TAAAGACCCGATGACTATATGAAGAGATTATGTCCGGG
Found at i:52667752 original size:40 final size:40
Alignment explanation
Indices: 52667697--52668091 Score: 605
Period size: 40 Copynumber: 9.9 Consensus size: 40
52667687 CTCGACAATG
*
52667697 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
52667737 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
52667777 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
52667817 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
52667857 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* * *
52667897 ATCCGGGCTAAGTTCCGAAGAGCATT-GTGCTAGTGATAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
52667936 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* * * *
52667976 ATCCGGGCTAAGTTCTGAAGAGCATTCGTGCTAGTGATAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* ** * * * * *
52668016 ATCCGTGCTAAACCCCGAAGAGCATTCGTACTGGT-TTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* * *
52668055 ATCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGTGA
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
52668092 CGTGTATTCG
Statistics
Matches: 326, Mismatches: 27, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
39 67 0.21
40 259 0.79
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
Found at i:52667996 original size:119 final size:120
Alignment explanation
Indices: 52667697--52668091 Score: 623
Period size: 119 Copynumber: 3.3 Consensus size: 120
52667687 CTCGACAATG
*
52667697 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCAT
* *
52667762 TCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
66 TCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATAT
52667817 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCAT
*
52667882 TCATGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCATT-GTGCTAGTGATAT
66 TCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATAT
* *
52667936 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTTCTGAAGAGCAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCAT
* * * ** * * *
52668001 TCGTGCTAGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTACTGGT-TTAT
66 TCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATAT
* * *
52668055 ATCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGTGA
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
52668092 CGTGTATTCG
Statistics
Matches: 256, Mismatches: 18, Indels: 3
0.92 0.06 0.01
Matches are distributed among these distances:
119 146 0.57
120 110 0.43
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (120 bp):
ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCAT
TCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATAT
Found at i:52671409 original size:47 final size:47
Alignment explanation
Indices: 52671355--52671802 Score: 707
Period size: 47 Copynumber: 9.4 Consensus size: 47
52671345 CGGCCAAGAC
52671355 AAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
1 AAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
* *
52671402 AAAGTGTATATATGTGATAAGGGCTAATGGCCAATGTGATGAATGTG
1 AAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
*
52671449 AAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTG
1 AAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
52671498 AAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
1 AAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
*
52671545 AAAGTGTATATATATGTGAGAAGGCCTAATGGCCGATGTGATGAATGTG
1 AAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
* *
52671594 AAAGTGTATATATGTGGTAAGGCCTAATAGCCGATGTGATGAATGTG
1 AAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
*
52671641 AAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTG
1 AAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
* *
52671688 AAAGTGTATATATGTGATGAGGCCTAATTGCCGATGTGATGAATGTG
1 AAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
* * * * * * *
52671735 AAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTG
1 AAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
*
52671782 AAAGTGTATAAATGTGATAAG
1 AAAGTGTATATATGTGATAAG
52671803 TCCCGAAGGG
Statistics
Matches: 372, Mismatches: 25, Indels: 8
0.92 0.06 0.02
Matches are distributed among these distances:
47 282 0.76
49 90 0.24
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
AAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
Found at i:52671469 original size:96 final size:94
Alignment explanation
Indices: 52671355--52671802 Score: 707
Period size: 96 Copynumber: 4.7 Consensus size: 94
52671345 CGGCCAAGAC
52671355 AAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
1 AAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
* *
52671420 AAGGGCTAATGGCCAATGTGATGAATGTG
66 AAGGCCTAATGGCCGATGTGATGAATGTG
*
52671449 AAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTG
1 AAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG
52671514 ATAAGGCCTAATGGCCGATGTGATGAATGTG
64 ATAAGGCCTAATGGCCGATGTGATGAATGTG
*
52671545 AAAGTGTATATATATGTGAGAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG
1 AAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG
* *
52671610 GTAAGGCCTAATAGCCGATGTGATGAATGTG
64 ATAAGGCCTAATGGCCGATGTGATGAATGTG
*
52671641 AAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
1 AAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
* *
52671706 GAGGCCTAATTGCCGATGTGATGAATGTG
66 AAGGCCTAATGGCCGATGTGATGAATGTG
* * * * * * * *
52671735 AAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGAT
1 AAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
52671800 AAG
66 AAG
52671803 TCCCGAAGGG
Statistics
Matches: 330, Mismatches: 22, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
94 147 0.45
96 183 0.55
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (94 bp):
AAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
AAGGCCTAATGGCCGATGTGATGAATGTG
Found at i:52671534 original size:143 final size:141
Alignment explanation
Indices: 52671355--52671802 Score: 716
Period size: 143 Copynumber: 3.1 Consensus size: 141
52671345 CGGCCAAGAC
52671355 AAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
1 AAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
* *
52671420 AAGGGCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATAGCCGA
66 AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATAGCCGA
52671485 TGTGATGAATGTG
129 TGTGATGAATGTG
52671498 AAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTG
1 AAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTG
* *
52671563 AGAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGGTAAGGCCTAATAGCCGA
64 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGA
52671628 TGTGATGAATGTG
129 TGTGATGAATGTG
*
52671641 AAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
1 AAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
* * * * * * * * *
52671706 GAGGCCTAATTGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACG
66 AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATG
*
52671771 TGATGGATGTG
131 TGATGAATGTG
*
52671782 AAAGTGTATAAATGTGATAAG
1 AAAGTGTATATATGTGATAAG
52671803 TCCCGAAGGG
Statistics
Matches: 285, Mismatches: 18, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
141 96 0.34
143 145 0.51
145 44 0.15
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (141 bp):
AAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATG
TGATGAATGTG
Found at i:52676030 original size:48 final size:48
Alignment explanation
Indices: 52675970--52676251 Score: 210
Period size: 48 Copynumber: 5.9 Consensus size: 48
52675960 AACGGTGCAG
* * * * *
52675970 ATGCCATGTCCCAGACATGGTCTTATACGGGACCTCATATTGGTTCCA
1 ATGCCATATCCCAGATATGGTCTTATACGGGACCTCATACTGATGCCA
* * * *
52676018 ATTCCATATCCCAGATATGGTCTTATATGGGATCTCATACTGATGCCG
1 ATGCCATATCCCAGATATGGTCTTATACGGGACCTCATACTGATGCCA
* * * * * *
52676066 ATGCCATATCCTAGATATGGTCTTACACGAGATCTCAT-CTCGATGGCG
1 ATGCCATATCCCAGATATGGTCTTATACGGGACCTCATACT-GATGCCA
* * * * * * * *
52676114 ATGCCATATCGCAGATATAGTTTTACATGGGATCTCAT-TTCGATGCCG
1 ATGCCATATCCCAGATATGGTCTTATACGGGACCTCATACT-GATGCCA
* * * * * ***
52676162 ATGTCATATCCCATATATGGTCTTACACGGGATCTCAT-TTCGATGGTG
1 ATGCCATATCCCAGATATGGTCTTATACGGGACCTCATACT-GATGCCA
* *
52676210 ATGTCATATCCCAGATATGGTCTTATACGGGATCTCAATACT
1 ATGCCATATCCCAGATATGGTCTTATACGGGACCTC-ATACT
52676252 CACATGTCGT
Statistics
Matches: 197, Mismatches: 34, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
47 2 0.01
48 192 0.97
49 2 0.01
50 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.20, T:0.32
Consensus pattern (48 bp):
ATGCCATATCCCAGATATGGTCTTATACGGGACCTCATACTGATGCCA
Found at i:52676070 original size:96 final size:96
Alignment explanation
Indices: 52675969--52676252 Score: 313
Period size: 96 Copynumber: 2.9 Consensus size: 96
52675959 TAACGGTGCA
* * * * * ** *
52675969 GATGCCATGTCCCAGACATGGTCTTATACGGGACCTCATATTGGTTCCAATTCCATATCCCAGAT
1 GATGCCATATCCCAGATATGGTCTTACACGGGATCTCAT-TTGATGGCGATTCCATATCCCAGAT
52676034 ATGGTCTTATATGGGATCTCATACT-GATGCC
65 ATGGTCTTATATGGGATCTCATACTCGATGCC
* * * * *
52676065 GATGCCATATCCTAGATATGGTCTTACACGAGATCTCATCTCGATGGCGATGCCATATCGCAGAT
1 GATGCCATATCCCAGATATGGTCTTACACGGGATCTCAT-TTGATGGCGATTCCATATCCCAGAT
* * * *
52676130 ATAGTTTTACATGGGATCTCAT-TTCGATGCC
65 ATGGTCTTATATGGGATCTCATACTCGATGCC
* * *
52676161 GATGTCATATCCCATATATGGTCTTACACGGGATCTCATTTCGATGGTGATGT-CATATCCCAGA
1 GATGCCATATCCCAGATATGGTCTTACACGGGATCTCATTT-GATGGCGAT-TCCATATCCCAGA
*
52676225 TATGGTCTTATACGGGATCTCAATACTC
64 TATGGTCTTATATGGGATCTC-ATACTC
52676253 ACATGTCGTG
Statistics
Matches: 152, Mismatches: 31, Indels: 8
0.80 0.16 0.04
Matches are distributed among these distances:
95 2 0.01
96 146 0.96
97 2 0.01
98 2 0.01
ACGTcount: A:0.25, C:0.23, G:0.20, T:0.32
Consensus pattern (96 bp):
GATGCCATATCCCAGATATGGTCTTACACGGGATCTCATTTGATGGCGATTCCATATCCCAGATA
TGGTCTTATATGGGATCTCATACTCGATGCC
Found at i:52676267 original size:96 final size:96
Alignment explanation
Indices: 52676021--52676252 Score: 315
Period size: 96 Copynumber: 2.4 Consensus size: 96
52676011 GGTTCCAATT
*
52676021 CCATATCCCAGATATGGTCTTATATGGGATCTCATACT-GATGCCGATGCCATATCCTAGATATG
1 CCATATCCCAGATATGGTCTTATATGGGATCTCATACTCGATGCCGATG-CATATCCCAGATATG
52676085 GTCTTACACGAGATCTCATCTCGATGGCGATG
65 GTCTTACACGAGATCTCATCTCGATGGCGATG
* * * * * *
52676117 CCATATCGCAGATATAGTTTTACATGGGATCTCAT-TTCGATGCCGATGTCATATCCCATATATG
1 CCATATCCCAGATATGGTCTTATATGGGATCTCATACTCGATGCCGATG-CATATCCCAGATATG
* * *
52676181 GTCTTACACGGGATCTCATTTCGATGGTGATG
65 GTCTTACACGAGATCTCATCTCGATGGCGATG
* *
52676213 TCATATCCCAGATATGGTCTTATACGGGATCTCAATACTC
1 CCATATCCCAGATATGGTCTTATATGGGATCTC-ATACTC
52676253 ACATGTCGTG
Statistics
Matches: 115, Mismatches: 18, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
95 1 0.01
96 110 0.96
97 2 0.02
98 2 0.02
ACGTcount: A:0.25, C:0.23, G:0.20, T:0.32
Consensus pattern (96 bp):
CCATATCCCAGATATGGTCTTATATGGGATCTCATACTCGATGCCGATGCATATCCCAGATATGG
TCTTACACGAGATCTCATCTCGATGGCGATG
Found at i:52682204 original size:47 final size:47
Alignment explanation
Indices: 52682150--52682601 Score: 769
Period size: 47 Copynumber: 9.6 Consensus size: 47
52682140 TATTTGAATA
* *
52682150 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
52682197 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
52682246 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
52682293 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
52682340 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
52682387 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
52682434 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
52682481 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * *
52682528 AATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
52682575 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
52682602 TCCCGAAGGG
Statistics
Matches: 389, Mismatches: 14, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
47 344 0.88
49 45 0.12
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:52684059 original size:40 final size:40
Alignment explanation
Indices: 52684015--52684246 Score: 349
Period size: 40 Copynumber: 5.8 Consensus size: 40
52684005 GAGAATTGAG
52684015 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
52684055 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
52684095 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
*
52684135 AGTGATGTATCCGGACTAAGT-TCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCT-CGAAGAGCATTCGTGCT
* * ** *
52684175 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
* * * * *
52684215 GGTGTTATATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCA
52684247 ATCATGCTGG
Statistics
Matches: 177, Mismatches: 13, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
39 1 0.01
40 176 0.99
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (40 bp):
AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
Found at i:52688294 original size:47 final size:47
Alignment explanation
Indices: 52688240--52688548 Score: 510
Period size: 47 Copynumber: 6.6 Consensus size: 47
52688230 TATTTGAATA
52688240 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
52688287 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
52688334 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
52688381 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
52688428 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
52688475 AATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
52688522 GATGTGAAAGTGTATAAATTTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
52688549 TCCCGAAGGG
Statistics
Matches: 251, Mismatches: 11, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 251 1.00
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
Done.