Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 172 of 349
Found at i:55690420 original size:3 final size:3
Alignment explanation
Indices: 55690412--55690445 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
55690402 GCCAAGTAAA
55690412 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
55690446 AGATGGAGCC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:55693408 original size:22 final size:22
Alignment explanation
Indices: 55693377--55693430 Score: 81
Period size: 22 Copynumber: 2.5 Consensus size: 22
55693367 TATCCTGCTA
*
55693377 GGCACGAAGCCTGAATAACACC
1 GGCACAAAGCCTGAATAACACC
55693399 GGCACAAAGCCTGAATAACACC
1 GGCACAAAGCCTGAATAACACC
* *
55693421 AGCATAAAGC
1 GGCACAAAGC
55693431 TTGCTAGGCA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.41, C:0.30, G:0.20, T:0.09
Consensus pattern (22 bp):
GGCACAAAGCCTGAATAACACC
Found at i:55703324 original size:18 final size:18
Alignment explanation
Indices: 55703301--55703336 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
55703291 GAATTAACCC
55703301 AATTTGAAATAAGAATAG
1 AATTTGAAATAAGAATAG
* *
55703319 AATTTGTAATAGGAATAG
1 AATTTGAAATAAGAATAG
55703337 TCATAATTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.19, T:0.31
Consensus pattern (18 bp):
AATTTGAAATAAGAATAG
Found at i:55725743 original size:47 final size:47
Alignment explanation
Indices: 55725679--55725811 Score: 176
Period size: 47 Copynumber: 2.8 Consensus size: 47
55725669 GTACGAATAA
* *
55725679 TACCTTGATTTGGCTACGGGCCATGATATAGGTATTTTGTGAGGAGT
1 TACCTTGATTTGGCTACGGGCCATGGTATAGGTATTTTGGGAGGAGT
* * ** *
55725726 TACCTTGATTTGGCTACGAGCCATGGTATAGGTACTACGGGATGAGT
1 TACCTTGATTTGGCTACGGGCCATGGTATAGGTATTTTGGGAGGAGT
* *
55725773 TACCTTGATTTGGCTACGGGTCATGGTATAAGTACTTTT
1 TACCTTGATTTGGCTACGGGCCATGGTATAGGTA-TTTT
55725812 CGATTGTGAT
Statistics
Matches: 72, Mismatches: 13, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
47 71 0.99
48 1 0.01
ACGTcount: A:0.22, C:0.15, G:0.28, T:0.35
Consensus pattern (47 bp):
TACCTTGATTTGGCTACGGGCCATGGTATAGGTATTTTGGGAGGAGT
Found at i:55733727 original size:40 final size:40
Alignment explanation
Indices: 55733627--55733798 Score: 213
Period size: 40 Copynumber: 4.3 Consensus size: 40
55733617 GCTCCTCGTT
* * *
55733627 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* *
55733667 C-AATGCCTTCGGGACATAACCCGGATTTAATAACTCGTA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * *
55733706 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * * *
55733746 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGG-ATTTAGTAACTCGCA
55733786 CAAATGCCTTCGG
1 CAAATGCCTTCGG
55733799 ATCTTAGTCC
Statistics
Matches: 117, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
39 34 0.29
40 79 0.68
41 4 0.03
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:55733811 original size:80 final size:79
Alignment explanation
Indices: 55733627--55733851 Score: 231
Period size: 80 Copynumber: 2.8 Consensus size: 79
55733617 GCTCCTCGTT
* * * * *
55733627 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGG-
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGT-ACTCGCACAAAGCCTTCGGGACTTAACCCGGA
*
55733691 ATTTAATAACTCGTA
65 ATTTAATAACTCGCA
* * *
55733706 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGGGCTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTA-CTCGCACAAA-GCCTTCGGGACTTAACCCGG
* *
55733771 AATTT-GTATCTCGCA
64 AATTTAATAACTCGCA
* * * * *
55733786 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGT-AC-TCGCACAAAGCCTTCGGGACTTAACCCG
55733850 GA
63 GA
55733852 CAGCATTCAA
Statistics
Matches: 121, Mismatches: 19, Indels: 11
0.80 0.13 0.07
Matches are distributed among these distances:
78 1 0.01
79 39 0.32
80 68 0.56
81 13 0.11
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTACTCGCACAAAGCCTTCGGGACTTAACCCGGAA
TTTAATAACTCGCA
Found at i:55733860 original size:41 final size:41
Alignment explanation
Indices: 55733783--55733860 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
55733773 TTTGTATCTC
* * *
55733783 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
55733824 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
55733861 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:55733998 original size:13 final size:13
Alignment explanation
Indices: 55733980--55734008 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
55733970 ACACATAGAG
55733980 CATGATTTAATCA
1 CATGATTTAATCA
55733993 CATGATTTAATCA
1 CATGATTTAATCA
55734006 CAT
1 CAT
55734009 CGTAATTTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.38, C:0.17, G:0.07, T:0.38
Consensus pattern (13 bp):
CATGATTTAATCA
Found at i:55755504 original size:40 final size:40
Alignment explanation
Indices: 55755449--55755661 Score: 326
Period size: 40 Copynumber: 5.3 Consensus size: 40
55755439 GATAACAGGA
55755449 CTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-ATTCCGGG
1 CTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCCGGG
55755489 CTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-ATTCCGGG
1 CTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCCGGG
55755529 CTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGG
1 CTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGG
**
55755569 CTAAGTCCCGAAGGCATTTGTGCGAACTACTATATCCGGG
1 CTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGG
*
55755609 CTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATATCC-GG
1 CTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGGG
* *
55755648 TTAAATCCCGAAGG
1 CTAAGTCCCGAAGG
55755662 TACTTGGTTT
Statistics
Matches: 165, Mismatches: 6, Indels: 5
0.94 0.03 0.03
Matches are distributed among these distances:
39 16 0.10
40 148 0.90
41 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
CTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGG
Found at i:55756247 original size:80 final size:80
Alignment explanation
Indices: 55756114--55756369 Score: 385
Period size: 80 Copynumber: 3.2 Consensus size: 80
55756104 GATGATAACG
*
55756114 GGGCTAAGTCCCAAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTG
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTG
*
55756179 CGAGTTACTA-ATTTC
66 CGAGTTACTATA-TCC
*
55756194 GGGCTAGGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTG
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTG
55756259 CGAGTTACTATATCC
66 CGAGTTACTATATCC
** *
55756274 GGGCTAAGTCCCGAAGGCATTTGTGCGAACTACT-ATATCCGGGCTAAGTCCCGAAGGCATTTGA
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCCGGGCTAAGTCCCGAAGGCATTTGT
55756338 GCGAG-TAGCTATATCC
65 GCGAGTTA-CTATATCC
* *
55756354 -GGTTAAATCCCGAAGG
1 GGGCTAAGTCCCGAAGG
55756370 TACTTGGTTT
Statistics
Matches: 164, Mismatches: 9, Indels: 7
0.91 0.05 0.04
Matches are distributed among these distances:
79 18 0.11
80 145 0.88
81 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (80 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTG
CGAGTTACTATATCC
Found at i:55756355 original size:40 final size:40
Alignment explanation
Indices: 55756114--55756343 Score: 374
Period size: 40 Copynumber: 5.8 Consensus size: 40
55756104 GATGATAACG
*
55756114 GGGCTAAGTCCCAAAGGCATTTGTGCGAGTTACTAATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
*
55756154 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTTC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
*
55756194 GGGCTAGGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
55756234 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCC
**
55756274 GGGCTAAGTCCCGAAGGCATTTGTGCGAACTACT-ATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCC
*
55756314 GGGCTAAGTCCCGAAGGCATTTGAGCGAGT
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGT
55756344 AGCTATATCC
Statistics
Matches: 179, Mismatches: 10, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
39 2 0.01
40 177 0.99
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
Found at i:55764328 original size:40 final size:40
Alignment explanation
Indices: 55764196--55764423 Score: 374
Period size: 40 Copynumber: 5.8 Consensus size: 40
55764186 GATGATAACG
*
55764196 GGGCTAAGTCCCGAAGGCATTTGTGC-AGTGACTAATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
55764235 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATT-C
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
55764274 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
55764314 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCC
**
55764354 GGGCTAAGTCCCGAAGGCATTTGTGCGAACTACT-ATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCC
*
55764394 GGGCTAAGTCCCGAAGGCATTTGAGCGAGT
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGT
55764424 AGCTATATCC
Statistics
Matches: 180, Mismatches: 6, Indels: 5
0.94 0.03 0.03
Matches are distributed among these distances:
39 67 0.37
40 113 0.63
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
Found at i:55764430 original size:40 final size:39
Alignment explanation
Indices: 55764196--55764449 Score: 370
Period size: 40 Copynumber: 6.4 Consensus size: 39
55764186 GATGATAACG
*
55764196 GGGCTAAGTCCCGAAGGCATTTGTGC-AGTGACTAATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA-TCC
*
55764235 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATCC
55764274 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA-TCC
55764314 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-ATCC
**
55764354 GGGCTAAGTCCCGAAGGCATTTGTGCGAACTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-ATCC
*
55764394 GGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTA-ATCC
* *
55764434 -GGTTAAATCCCGAAGG
1 GGGCTAAGTCCCGAAGG
55764450 TACTTGGTTT
Statistics
Matches: 202, Mismatches: 9, Indels: 8
0.92 0.04 0.04
Matches are distributed among these distances:
39 80 0.40
40 121 0.60
41 1 0.00
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATCC
Found at i:55767825 original size:68 final size:66
Alignment explanation
Indices: 55767750--55767921 Score: 170
Period size: 67 Copynumber: 2.6 Consensus size: 66
55767740 CATCATGTGT
* * * *
55767750 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTA-TG-TGTACACCA
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCA
55767813 TGTAG
62 TGTAG
** * *
55767818 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCA-GTGAAGGACACCATGT
55767883 AG
65 AG
* * * *
55767885 ACAAGAGAGCTACGAGATAAAT-TGGCTAGGTCACATG
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATG
55767922 GGTGGTACTG
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
64 24 0.27
65 3 0.03
66 17 0.19
67 32 0.36
68 13 0.15
ACGTcount: A:0.32, C:0.17, G:0.29, T:0.22
Consensus pattern (66 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCATGTA
G
Found at i:55767855 original size:64 final size:64
Alignment explanation
Indices: 55767774--55767957 Score: 203
Period size: 67 Copynumber: 2.8 Consensus size: 64
55767764 AGACATTATG
* * *
55767774 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
55767838 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
55767903 AA
63 AA
* * *
55767905 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGC
55767958 CGAACTATAT
Statistics
Matches: 99, Mismatches: 16, Indels: 11
0.79 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 25 0.25
66 21 0.21
67 33 0.33
ACGTcount: A:0.29, C:0.17, G:0.31, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:55772211 original size:68 final size:68
Alignment explanation
Indices: 55772139--55772286 Score: 160
Period size: 64 Copynumber: 2.2 Consensus size: 68
55772129 CATCATGTGT
* * * *
55772139 ACAAGAGAGCTACAAGACATTATTATGTAGCTAGGTCGCATGGGTGATACTA-TG-TGTACACCA
1 ACAAGAGAGCTACAAGACA-TA-TATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCA
55772202 TGTAG
64 TGTAG
* ** * *
55772207 ACAAGAGAGCT--ATGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCAT
1 ACAAGAGAGCTACAAGACATATATGTAGCTAGGTCGCATGCGTGATACCA-GTGAAGGACACCAT
55772270 GTAG
65 GTAG
55772274 ACAAGAGAGCTAC
1 ACAAGAGAGCTAC
55772287 GAGATAAATT
Statistics
Matches: 66, Mismatches: 9, Indels: 9
0.79 0.11 0.11
Matches are distributed among these distances:
64 25 0.38
65 2 0.03
66 5 0.08
67 23 0.35
68 11 0.17
ACGTcount: A:0.32, C:0.17, G:0.28, T:0.23
Consensus pattern (68 bp):
ACAAGAGAGCTACAAGACATATATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCATG
TAG
Found at i:55772243 original size:64 final size:64
Alignment explanation
Indices: 55772088--55772346 Score: 204
Period size: 68 Copynumber: 3.9 Consensus size: 64
55772078 TGGATGATAC
* ** * * *
55772088 AGATAGTATGTAGCTAGGTCACATGTATGGTGCTGA-GTGCACATCATGT-GTACAAGAGAGCTA
1 AGATA-TATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGCTA
55772151 CAAG
63 C--G
* * *
55772155 ACATTATTATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTAT
1 AGA-TA-TATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTAC
55772220 G
64 G
* * * * * *
55772221 GGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTA
1 AGATATATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTA
55772286 CG
63 CG
* * * *
55772288 AGATAAAT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 AGATATATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGC
55772347 CGAACTATAT
Statistics
Matches: 155, Mismatches: 29, Indels: 20
0.76 0.14 0.10
Matches are distributed among these distances:
62 1 0.01
63 19 0.12
64 26 0.17
65 2 0.01
66 23 0.15
67 35 0.23
68 48 0.31
69 1 0.01
ACGTcount: A:0.30, C:0.16, G:0.29, T:0.25
Consensus pattern (64 bp):
AGATATATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACG
Found at i:55776076 original size:5 final size:5
Alignment explanation
Indices: 55776066--55776106 Score: 82
Period size: 5 Copynumber: 8.2 Consensus size: 5
55776056 GATGCCAACT
55776066 ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA A
1 ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA A
55776107 ATTTGTTTTT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 36 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
ATAAA
Found at i:55781304 original size:17 final size:17
Alignment explanation
Indices: 55781284--55781322 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
55781274 CATATTAATG
*
55781284 ATAATAACAAATCAATT
1 ATAATAACAAATCAATA
*
55781301 ATAATCACAAATCAATA
1 ATAATAACAAATCAATA
55781318 ATAAT
1 ATAAT
55781323 TCATTCTAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.59, C:0.13, G:0.00, T:0.28
Consensus pattern (17 bp):
ATAATAACAAATCAATA
Found at i:55786540 original size:31 final size:29
Alignment explanation
Indices: 55786502--55786602 Score: 86
Period size: 31 Copynumber: 3.4 Consensus size: 29
55786492 AAGTTAATTT
55786502 AAAATATAAGTATAAGAATAATAAATAATAA
1 AAAATATAA--ATAAGAATAATAAATAATAA
* * *
55786533 ATAATATAAAAATTAGTAA-AATAAAAAATAA
1 A-AA-ATATAAATAAG-AATAATAAATAATAA
55786564 AAAATATAAATAA-AAT-ATAAATAA-AA
1 AAAATATAAATAAGAATAATAAATAATAA
55786590 GAAAATA-AAATAA
1 -AAAATATAAATAA
55786603 AAATGGGGTG
Statistics
Matches: 59, Mismatches: 6, Indels: 15
0.74 0.08 0.19
Matches are distributed among these distances:
26 8 0.14
27 15 0.25
29 8 0.14
30 2 0.03
31 17 0.29
32 4 0.07
33 5 0.08
ACGTcount: A:0.72, C:0.00, G:0.04, T:0.24
Consensus pattern (29 bp):
AAAATATAAATAAGAATAATAAATAATAA
Found at i:55786557 original size:5 final size:5
Alignment explanation
Indices: 55786549--55786604 Score: 62
Period size: 5 Copynumber: 11.0 Consensus size: 5
55786539 TAAAAATTAG
*
55786549 TAAAA TAAAA -AATAA -AAAA TATAAA TAAAA TATAAA TAAAA GAAAA
1 TAAAA TAAAA TAA-AA TAAAA TA-AAA TAAAA TA-AAA TAAAA TAAAA
55786595 TAAAA TAAAA
1 TAAAA TAAAA
55786605 ATGGGGTGAT
Statistics
Matches: 45, Mismatches: 2, Indels: 8
0.82 0.04 0.15
Matches are distributed among these distances:
4 4 0.09
5 31 0.69
6 10 0.22
ACGTcount: A:0.79, C:0.00, G:0.02, T:0.20
Consensus pattern (5 bp):
TAAAA
Found at i:55790232 original size:22 final size:22
Alignment explanation
Indices: 55790207--55790251 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
55790197 CCAATTGCAA
55790207 AATAAATACTCGTCAATAACCT
1 AATAAATACTCGTCAATAACCT
*
55790229 AATAAATACTTGTCAATAACCT
1 AATAAATACTCGTCAATAACCT
55790251 A
1 A
55790252 TGCCAACGCT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.47, C:0.20, G:0.04, T:0.29
Consensus pattern (22 bp):
AATAAATACTCGTCAATAACCT
Found at i:55799711 original size:13 final size:13
Alignment explanation
Indices: 55799690--55799722 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
55799680 TTCAGTTAAA
*
55799690 TTAGTTAATTAGT
1 TTAGATAATTAGT
55799703 TTAGATAATTAGT
1 TTAGATAATTAGT
55799716 TTA-ATAA
1 TTAGATAA
55799723 ACAAACCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:55803176 original size:21 final size:20
Alignment explanation
Indices: 55803144--55803188 Score: 54
Period size: 21 Copynumber: 2.2 Consensus size: 20
55803134 TCTGTTCAAT
*
55803144 CGTGTACAATAATACACAGG
1 CGTGTACAATAACACACAGG
* *
55803164 CGTGCTACCATAACACACGGG
1 CGTG-TACAATAACACACAGG
55803185 CGTG
1 CGTG
55803189 GGAGAATTGA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
20 4 0.19
21 17 0.81
ACGTcount: A:0.31, C:0.27, G:0.24, T:0.18
Consensus pattern (20 bp):
CGTGTACAATAACACACAGG
Found at i:55805135 original size:14 final size:13
Alignment explanation
Indices: 55805116--55805181 Score: 62
Period size: 13 Copynumber: 4.8 Consensus size: 13
55805106 TCCTCCTATC
55805116 TTTTTATTCTTATT
1 TTTTTATT-TTATT
55805130 TTTTTATTTTATT
1 TTTTTATTTTATT
*
55805143 TTTAT-TTTTATT
1 TTTTTATTTTATT
55805155 TTCATTTCAATTTTATT
1 TT--TTT--ATTTTATT
*
55805172 ATTTTATTTT
1 TTTTTATTTT
55805182 GAAAAAATAT
Statistics
Matches: 44, Mismatches: 3, Indels: 11
0.76 0.05 0.19
Matches are distributed among these distances:
12 9 0.20
13 14 0.32
14 10 0.23
15 3 0.07
17 8 0.18
ACGTcount: A:0.18, C:0.05, G:0.00, T:0.77
Consensus pattern (13 bp):
TTTTTATTTTATT
Found at i:55805139 original size:6 final size:6
Alignment explanation
Indices: 55805116--55805161 Score: 56
Period size: 6 Copynumber: 7.5 Consensus size: 6
55805106 TCCTCCTATC
* * *
55805116 TTTTTA TTCTTA TTTTTT TATTTTA TTTTTA TTTTTA TTTTCA TTT
1 TTTTTA TTTTTA TTTTTA T-TTTTA TTTTTA TTTTTA TTTTTA TTT
55805162 CAATTTTATT
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
6 29 0.85
7 5 0.15
ACGTcount: A:0.15, C:0.04, G:0.00, T:0.80
Consensus pattern (6 bp):
TTTTTA
Found at i:55808096 original size:13 final size:13
Alignment explanation
Indices: 55808080--55808112 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
55808070 TTCAATTAAA
*
55808080 TTAGTTAATTAGT
1 TTAGATAATTAGT
55808093 TTAGATAATTAGT
1 TTAGATAATTAGT
55808106 TTA-ATAA
1 TTAGATAA
55808113 ACAAACCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:55811640 original size:49 final size:49
Alignment explanation
Indices: 55811520--55811786 Score: 384
Period size: 49 Copynumber: 5.6 Consensus size: 49
55811510 CCCTTCGGGA
* * * * * * *
55811520 CTTATCACAT-T-TATACACTTTCACGTCCATCACGTTGGTCACTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
55811567 CCTGTCAC--ATATATACACTTTCACATTCATCACATCGTCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
55811614 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
55811663 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
55811712 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
55811761 CTTATCAC--ATATATACACTTTCACAT
1 CTTATCACATATATATACACTTTCACAT
55811787 CACAATTATC
Statistics
Matches: 201, Mismatches: 15, Indels: 8
0.90 0.07 0.04
Matches are distributed among these distances:
46 1 0.00
47 58 0.29
49 142 0.71
ACGTcount: A:0.28, C:0.30, G:0.08, T:0.34
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:55817973 original size:23 final size:23
Alignment explanation
Indices: 55817943--55818002 Score: 120
Period size: 23 Copynumber: 2.6 Consensus size: 23
55817933 CATGCCATTA
55817943 TACCAAAATGAGATTTCTATTTG
1 TACCAAAATGAGATTTCTATTTG
55817966 TACCAAAATGAGATTTCTATTTG
1 TACCAAAATGAGATTTCTATTTG
55817989 TACCAAAATGAGAT
1 TACCAAAATGAGAT
55818003 AGTGGATAGT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 37 1.00
ACGTcount: A:0.38, C:0.13, G:0.13, T:0.35
Consensus pattern (23 bp):
TACCAAAATGAGATTTCTATTTG
Found at i:55831356 original size:32 final size:32
Alignment explanation
Indices: 55831320--55831381 Score: 124
Period size: 32 Copynumber: 1.9 Consensus size: 32
55831310 AATGCTTACC
55831320 ATGCCCATCATCCATTAACTATTAAAATGCAA
1 ATGCCCATCATCCATTAACTATTAAAATGCAA
55831352 ATGCCCATCATCCATTAACTATTAAAATGC
1 ATGCCCATCATCCATTAACTATTAAAATGC
55831382 TAAAATGCAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.39, C:0.26, G:0.06, T:0.29
Consensus pattern (32 bp):
ATGCCCATCATCCATTAACTATTAAAATGCAA
Found at i:55832589 original size:20 final size:19
Alignment explanation
Indices: 55832544--55832581 Score: 51
Period size: 20 Copynumber: 2.0 Consensus size: 19
55832534 GAGCGAAAGG
*
55832544 AACGAG-AAATGGGCCAAA
1 AACGAGAAAATAGGCCAAA
55832562 AACGGAGAAAATAGGCCAAA
1 AAC-GAGAAAATAGGCCAAA
55832582 GTACGAGATC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 3 0.18
19 3 0.18
20 11 0.65
ACGTcount: A:0.53, C:0.16, G:0.26, T:0.05
Consensus pattern (19 bp):
AACGAGAAAATAGGCCAAA
Found at i:55841419 original size:20 final size:19
Alignment explanation
Indices: 55841374--55841411 Score: 51
Period size: 20 Copynumber: 2.0 Consensus size: 19
55841364 GAGCGAAAGG
*
55841374 AACGAG-AAATGGGCCAAA
1 AACGAGAAAATGAGCCAAA
55841392 AACGGAGAAAATGAGCCAAA
1 AAC-GAGAAAATGAGCCAAA
55841412 GTACGAGATC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 3 0.18
19 3 0.18
20 11 0.65
ACGTcount: A:0.53, C:0.16, G:0.26, T:0.05
Consensus pattern (19 bp):
AACGAGAAAATGAGCCAAA
Found at i:55841947 original size:14 final size:13
Alignment explanation
Indices: 55841927--55841958 Score: 55
Period size: 14 Copynumber: 2.4 Consensus size: 13
55841917 AATATTTAAC
55841927 TTGTTCTTAATTA
1 TTGTTCTTAATTA
55841940 TGTGTTCTTAATTA
1 T-TGTTCTTAATTA
55841954 TTGTT
1 TTGTT
55841959 TTGATATCCC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 5 0.28
14 13 0.72
ACGTcount: A:0.19, C:0.06, G:0.12, T:0.62
Consensus pattern (13 bp):
TTGTTCTTAATTA
Found at i:55842980 original size:25 final size:25
Alignment explanation
Indices: 55842946--55842993 Score: 96
Period size: 25 Copynumber: 1.9 Consensus size: 25
55842936 ATAGTGAGGG
55842946 ATTTATATAGATTTTGGGGCACAAA
1 ATTTATATAGATTTTGGGGCACAAA
55842971 ATTTATATAGATTTTGGGGCACA
1 ATTTATATAGATTTTGGGGCACA
55842994 CGGCCGTGGG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.33, C:0.08, G:0.21, T:0.38
Consensus pattern (25 bp):
ATTTATATAGATTTTGGGGCACAAA
Found at i:55847201 original size:78 final size:81
Alignment explanation
Indices: 55847066--55847249 Score: 234
Period size: 78 Copynumber: 2.3 Consensus size: 81
55847056 TCGAATGATG
* *
55847066 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
55847130 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
55847145 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAA
*
55847207 TTGTGCGAGTTACTATA
65 TTGTGCGAGATACTATA
* *
55847224 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
55847250 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 10, Indels: 7
0.84 0.09 0.06
Matches are distributed among these distances:
77 1 0.01
78 48 0.53
79 28 0.31
80 14 0.15
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
TGTGCGAGATACTATA
Found at i:55847211 original size:40 final size:40
Alignment explanation
Indices: 55847066--55847249 Score: 225
Period size: 40 Copynumber: 4.7 Consensus size: 40
55847056 TCGAATGATG
* * * *
55847066 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
55847106 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACT-AA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
55847145 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
55847184 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
55847225 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
55847250 AACGAGTAGC
Statistics
Matches: 125, Mismatches: 13, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
38 23 0.18
39 23 0.18
40 69 0.55
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:55847267 original size:80 final size:77
Alignment explanation
Indices: 55847119--55847272 Score: 202
Period size: 80 Copynumber: 2.0 Consensus size: 77
55847109 GGACTAAGAT
* * **
55847119 CCGAAGGCATTTGTGCGAGATACTAATCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 CCGAAGGCAATTGTGCGAGATACTAAACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAAA
55847184 TCCGGGTTAAGTC
66 TCC-GGTTAAGTC
* *
55847197 CCGAAGGCAATTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCT
1 CCGAAGGCAATTGTGCGAGATACTA-AACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-CT
*
55847261 ATATCCGGTTAA
63 AAATCCGGTTAA
55847273 ATTCTGAAGG
Statistics
Matches: 66, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
78 23 0.35
79 18 0.27
80 25 0.38
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (77 bp):
CCGAAGGCAATTGTGCGAGATACTAAACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAAA
TCCGGTTAAGTC
Found at i:55851146 original size:39 final size:40
Alignment explanation
Indices: 55851040--55851263 Score: 287
Period size: 40 Copynumber: 5.7 Consensus size: 40
55851030 GCTCCTCGTT
*
55851040 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
55851080 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
55851120 CAAATGCCTTC-GGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
55851159 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
55851198 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
55851239 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
55851264 CATCATTCAA
Statistics
Matches: 163, Mismatches: 15, Indels: 12
0.86 0.08 0.06
Matches are distributed among these distances:
38 2 0.01
39 70 0.43
40 78 0.48
41 13 0.08
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:55851151 original size:79 final size:79
Alignment explanation
Indices: 55851040--55851263 Score: 292
Period size: 79 Copynumber: 2.8 Consensus size: 79
55851030 GCTCCTCGTT
* *
55851040 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAATGCCTTC-GGACTTAGCCCGGATT-TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCG
*
55851104 GATTTAGTAACTCGCA
64 GAATTAGTAACTCGCA
* *
55851120 CAAATGCCTTCGGACTTAACCCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGCCCGGA
1 CAAATGCCTTCGGACTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA
*
55851184 ATTAGTATCTCGCA
66 ATTAGTAACTCGCA
* * * * *
55851198 CAAATGCCTTCGGATCTTAGTCCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGA-CTTAGCCCGGATTTAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCCCG
55851262 GA
64 GA
55851264 CATCATTCAA
Statistics
Matches: 127, Mismatches: 13, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
78 36 0.28
79 60 0.47
80 31 0.24
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGGACTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA
ATTAGTAACTCGCA
Found at i:55855549 original size:40 final size:40
Alignment explanation
Indices: 55855402--55855588 Score: 159
Period size: 39 Copynumber: 4.7 Consensus size: 40
55855392 AATGATGTCC
* * * * *
55855402 GGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCG
1 GGCTAAGTCCCGAAGGCATTTGTAC-GAGTTACTAAATCCG
* * * * * *
55855442 GACTAAGAT-CAGAAGGCATTTGTGCGAGATACTAATTTCG
1 GGCTAAG-TCCCGAAGGCATTTGTACGAGTTACTAAATCCG
* *
55855482 GGCTAAG-CCTGAAGGCATTTGTGCGAGTTACTAAATCCG
1 GGCTAAGTCCCGAAGGCATTTGTACGAGTTACTAAATCCG
* *
55855521 GGTTAAGTCCCGAAGGCAATTGTACGAGTTACTATAA--CG
1 GGCTAAGTCCCGAAGGCATTTGTACGAGTTACTA-AATCCG
* *
55855560 GGCTATGTCCCGAAGGCATTTGAACGAGT
1 GGCTAAGTCCCGAAGGCATTTGTACGAGT
55855589 AGCTATATCC
Statistics
Matches: 120, Mismatches: 22, Indels: 11
0.78 0.14 0.07
Matches are distributed among these distances:
39 60 0.50
40 50 0.42
41 10 0.08
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.26
Consensus pattern (40 bp):
GGCTAAGTCCCGAAGGCATTTGTACGAGTTACTAAATCCG
Found at i:55859378 original size:41 final size:41
Alignment explanation
Indices: 55859333--55859413 Score: 110
Period size: 41 Copynumber: 2.0 Consensus size: 41
55859323 GATATTGTGA
* *
55859333 GCACTTAGTGTGCGGA-ATTGAGATAACTTTGGTTATATATT
1 GCACTCAGTGTG-GGAGATTGAGATAACTTTGGCTATATATT
* *
55859374 GCACTCAGTGTGTGAGATTGAGATAGCTTTGGCTATATAT
1 GCACTCAGTGTGGGAGATTGAGATAACTTTGGCTATATAT
55859414 ATACATTGGC
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
40 2 0.06
41 33 0.94
ACGTcount: A:0.26, C:0.11, G:0.26, T:0.37
Consensus pattern (41 bp):
GCACTCAGTGTGGGAGATTGAGATAACTTTGGCTATATATT
Found at i:55866959 original size:43 final size:43
Alignment explanation
Indices: 55866889--55866972 Score: 123
Period size: 43 Copynumber: 2.0 Consensus size: 43
55866879 AAATTACATG
*
55866889 TGTCACATACATCACGAACTCAGACCAACTCAATGAGTTCAGA
1 TGTCACATACATCACGAACTCAAACCAACTCAATGAGTTCAGA
* * * *
55866932 TGTCACATATATCATGAGCTCAAACCAACTCAATGATTTCA
1 TGTCACATACATCACGAACTCAAACCAACTCAATGAGTTCA
55866973 AATCATATAA
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 36 1.00
ACGTcount: A:0.37, C:0.26, G:0.12, T:0.25
Consensus pattern (43 bp):
TGTCACATACATCACGAACTCAAACCAACTCAATGAGTTCAGA
Found at i:55870395 original size:7 final size:7
Alignment explanation
Indices: 55870383--55870409 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
55870373 AATATTAATC
55870383 AAATTTA
1 AAATTTA
55870390 AAATTTA
1 AAATTTA
55870397 AAATTTA
1 AAATTTA
55870404 AAATTT
1 AAATTT
55870410 GTTGTTATCT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (7 bp):
AAATTTA
Found at i:55875844 original size:189 final size:188
Alignment explanation
Indices: 55875501--55875844 Score: 399
Period size: 189 Copynumber: 1.8 Consensus size: 188
55875491 CGTTTCAAGG
*
55875501 AAAACGCCGCAATATACCAGAATTAGCGGCACTTTTATAAAAACGCCGCAAAAGTCTTGAGAGAA
1 AAAACGCCGCAATATACCAGAATTAGCGGCACTTTCATAAAAACGCCGCAAAAGTCTTGAGAGAA
* *
55875566 ACGACGACGTAGCTATAGAGGCTTTAGTGGCGTTTTACTAAAACGCTGCAATACATAAGAATTAG
66 ACGACGACGTA-CTATAGAGGCATTAGTGGCGTTTTACTAAAACGCCGCAATACATAAGAATTAG
* *
55875631 CGGCGCTTCTGTGAAAATGCCGCAACAGTGGCTGTAGATGCACTAGTGGCGTTTTATAT
130 CGGCGCTTCTCTGAAAACGCCGCAACAGTGGCTGTAGATGCACTAGTGGCGTTTTATAT
* * ** * * * *
55875690 AAAACGCCGCAATATATCAGCATTAGCGGCGGTTGTCAT-AAAATGCTGCAAAATTGTTGAGCA-
1 AAAACGCCGCAATATACCAGAATTAGCGGCACTT-TCATAAAAACGCCGCAAAAGTCTTGAG-AG
* * * * * * *
55875753 AAACGGCG-CGTTA-TATAGGGGCATTAGTGGCGTTTTTATGTAAAATGCCGCAATATATCATAA
64 AAACGACGACG-TACTATAGAGGCATTAGTGGCG-TTTTA-CTAAAACGCCGCAATACATAAGAA
* * *
55875816 TTAGCGGCGTTTGTCTTAAAACGCCGCAA
126 TTAGCGGCGCTTCTCTGAAAACGCCGCAA
55875845 AATTGTTGAG
Statistics
Matches: 127, Mismatches: 23, Indels: 10
0.79 0.14 0.06
Matches are distributed among these distances:
187 17 0.13
188 7 0.06
189 99 0.78
190 4 0.03
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (188 bp):
AAAACGCCGCAATATACCAGAATTAGCGGCACTTTCATAAAAACGCCGCAAAAGTCTTGAGAGAA
ACGACGACGTACTATAGAGGCATTAGTGGCGTTTTACTAAAACGCCGCAATACATAAGAATTAGC
GGCGCTTCTCTGAAAACGCCGCAACAGTGGCTGTAGATGCACTAGTGGCGTTTTATAT
Found at i:55875862 original size:104 final size:105
Alignment explanation
Indices: 55875674--55875952 Score: 395
Period size: 105 Copynumber: 2.7 Consensus size: 105
55875664 GTAGATGCAC
* ** * * * *
55875674 TAGTGGCG-TTTTATATAAAACGCCGCAATATATCAGCATTAGCGGCGGTTGTCATAAAATGCTG
1 TAGTGGCGTTTTTATGTAAAACGCCGCAATATATCATAATTAGCGGCGTTTGTCTTAAAACGCCG
*
55875738 CAAAATTGTTGAGCAAAACGGCG-CGTTATATAGG-GGCAT
66 CAAAATTGTTGAGAAAAACGGCGTCGTTATAT-GGAGGCAT
*
55875777 TAGTGGCGTTTTTATGTAAAATGCCGCAATATATCATAATTAGCGGCGTTTGTCTTAAAACGCCG
1 TAGTGGCGTTTTTATGTAAAACGCCGCAATATATCATAATTAGCGGCGTTTGTCTTAAAACGCCG
55875842 CAAAATTGTTGAGAAAAACGGCGTCGTTATATGGAGGCAT
66 CAAAATTGTTGAGAAAAACGGCGTCGTTATATGGAGGCAT
* * *
55875882 TAGTGGCATTTGTATGTAAAACGCCGCAATATATCATAATTAGAGGCGTTTGT-TCTAAAACGCC
1 TAGTGGCGTTTTTATGTAAAACGCCGCAATATATCATAATTAGCGGCGTTTGTCT-TAAAACGCC
*
55875946 GTAAAAT
65 GCAAAAT
55875953 GTTATGTTAT
Statistics
Matches: 158, Mismatches: 14, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
103 8 0.05
104 73 0.46
105 77 0.49
ACGTcount: A:0.32, C:0.16, G:0.23, T:0.29
Consensus pattern (105 bp):
TAGTGGCGTTTTTATGTAAAACGCCGCAATATATCATAATTAGCGGCGTTTGTCTTAAAACGCCG
CAAAATTGTTGAGAAAAACGGCGTCGTTATATGGAGGCAT
Found at i:55875917 original size:105 final size:103
Alignment explanation
Indices: 55875674--55875952 Score: 391
Period size: 104 Copynumber: 2.7 Consensus size: 103
55875664 GTAGATGCAC
* ** * * * *
55875674 TAGTGGCGTTTTATATAAAACGCCGCAATATATCAGCATTAGCGGCGGTTGTCATAAAATGCTGC
1 TAGTGGCGTTTTATGTAAAACGCCGCAATATATCATAATTAGCGGCGTTTGTCTTAAAACGCCGC
*
55875739 AAAATTGTTGAGCAAAACGGCGCGTTATATAGGGGCAT
66 AAAATTGTTGAGAAAAACGGCGCGTTATATAGGGGCAT
*
55875777 TAGTGGCGTTTTTATGTAAAATGCCGCAATATATCATAATTAGCGGCGTTTGTCTTAAAACGCCG
1 TAGTGGCG-TTTTATGTAAAACGCCGCAATATATCATAATTAGCGGCGTTTGTCTTAAAACGCCG
55875842 CAAAATTGTTGAGAAAAACGGCGTCGTTATAT-GGAGGCAT
65 CAAAATTGTTGAGAAAAACGGCG-CGTTATATAGG-GGCAT
* *
55875882 TAGTGGCATTTGTATGTAAAACGCCGCAATATATCATAATTAGAGGCGTTTGT-TCTAAAACGCC
1 TAGTGGCGTTT-TATGTAAAACGCCGCAATATATCATAATTAGCGGCGTTTGTCT-TAAAACGCC
*
55875946 GTAAAAT
64 GCAAAAT
55875953 GTTATGTTAT
Statistics
Matches: 158, Mismatches: 13, Indels: 8
0.88 0.07 0.04
Matches are distributed among these distances:
103 8 0.05
104 76 0.48
105 74 0.47
ACGTcount: A:0.32, C:0.16, G:0.23, T:0.29
Consensus pattern (103 bp):
TAGTGGCGTTTTATGTAAAACGCCGCAATATATCATAATTAGCGGCGTTTGTCTTAAAACGCCGC
AAAATTGTTGAGAAAAACGGCGCGTTATATAGGGGCAT
Found at i:55876713 original size:14 final size:14
Alignment explanation
Indices: 55876694--55876725 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
55876684 GGTTTAATTA
55876694 GTTTGGGGTTTGAG
1 GTTTGGGGTTTGAG
*
55876708 GTTTGGTGTTTGAG
1 GTTTGGGGTTTGAG
55876722 GTTT
1 GTTT
55876726 AGCTAGTGTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.06, C:0.00, G:0.44, T:0.50
Consensus pattern (14 bp):
GTTTGGGGTTTGAG
Found at i:55877604 original size:25 final size:25
Alignment explanation
Indices: 55877566--55877637 Score: 135
Period size: 25 Copynumber: 2.9 Consensus size: 25
55877556 GTTTGCCCCG
55877566 ATTCTGAAATCCCCAATTTCCCTAA
1 ATTCTGAAATCCCCAATTTCCCTAA
*
55877591 ATTTTGAAATCCCCAATTTCCCTAA
1 ATTCTGAAATCCCCAATTTCCCTAA
55877616 ATTCTGAAATCCCCAATTTCCC
1 ATTCTGAAATCCCCAATTTCCC
55877638 CATCTCCTCC
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 45 1.00
ACGTcount: A:0.31, C:0.32, G:0.04, T:0.33
Consensus pattern (25 bp):
ATTCTGAAATCCCCAATTTCCCTAA
Found at i:55880705 original size:18 final size:18
Alignment explanation
Indices: 55880682--55880729 Score: 69
Period size: 19 Copynumber: 2.6 Consensus size: 18
55880672 ACGAAAAATA
*
55880682 ATTTTAACATTTTATTTT
1 ATTTTAACATTTTATTAT
*
55880700 ATTTTAAATATTTTATTAT
1 ATTTT-AACATTTTATTAT
55880719 ATTTTAACATT
1 ATTTTAACATT
55880730 ACCTAATTAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
18 10 0.38
19 16 0.62
ACGTcount: A:0.33, C:0.04, G:0.00, T:0.62
Consensus pattern (18 bp):
ATTTTAACATTTTATTAT
Found at i:55880772 original size:62 final size:61
Alignment explanation
Indices: 55880592--55880784 Score: 220
Period size: 62 Copynumber: 3.2 Consensus size: 61
55880582 TTTTGCTCCC
*
55880592 TTTTATTTTATTTTCAAATTACCTAATTAAATTAAATTATATTTAAAGTTTCATTTTAAATA
1 TTTTATTTTATTTT-AAATTACCTAATTAAATTAAATTATATTTAAAGTTTTATTTTAAATA
* * * * * *
55880654 TTTTATTTT-TTTTGAATCA-CGAA--AAA-TAATTTTAACATTT-TA-TTTTATTTTAAATA
1 TTTTATTTTATTTTAAATTACCTAATTAAATTAA-ATT-ATATTTAAAGTTTTATTTTAAATA
*
55880710 TTTTATTATATTTTAACATTACCTAATTAAATTAAATTATATTTAAAGTTTTATTTTAAATA
1 TTTTATTTTATTTTAA-ATTACCTAATTAAATTAAATTATATTTAAAGTTTTATTTTAAATA
*
55880772 TTCTATTTTATTT
1 TTTTATTTTATTT
55880785 CACTTTAATT
Statistics
Matches: 105, Mismatches: 16, Indels: 20
0.74 0.11 0.14
Matches are distributed among these distances:
56 24 0.23
57 11 0.10
58 8 0.08
59 6 0.06
60 9 0.09
61 10 0.10
62 37 0.35
ACGTcount: A:0.37, C:0.06, G:0.02, T:0.55
Consensus pattern (61 bp):
TTTTATTTTATTTTAAATTACCTAATTAAATTAAATTATATTTAAAGTTTTATTTTAAATA
Found at i:55880897 original size:9 final size:9
Alignment explanation
Indices: 55880883--55881006 Score: 100
Period size: 9 Copynumber: 14.1 Consensus size: 9
55880873 CCAGCAACTC
55880883 ACATAATTT
1 ACATAATTT
55880892 ACATAATTT
1 ACATAATTT
55880901 ACATAA--T
1 ACATAATTT
*
55880908 ACATAACTT
1 ACATAATTT
55880917 ACATAATTT
1 ACATAATTT
*
55880926 AAAGTTTGAATTT
1 ACA---T-AATTT
*
55880939 -CATAACTT
1 ACATAATTT
55880947 ACATAATTT
1 ACATAATTT
*
55880956 ACATAACTT
1 ACATAATTT
55880965 ACATAA--T
1 ACATAATTT
*
55880972 ACATAACTT
1 ACATAATTT
55880981 ACATAA--T
1 ACATAATTT
* *
55880988 ACATGACTT
1 ACATAATTT
55880997 ACATAATTT
1 ACATAATTT
55881006 A
1 A
55881007 AAGATCAAAT
Statistics
Matches: 95, Mismatches: 9, Indels: 22
0.75 0.07 0.17
Matches are distributed among these distances:
7 20 0.21
8 4 0.04
9 64 0.67
12 2 0.02
13 5 0.05
ACGTcount: A:0.45, C:0.15, G:0.02, T:0.38
Consensus pattern (9 bp):
ACATAATTT
Found at i:55880912 original size:16 final size:16
Alignment explanation
Indices: 55880891--55881108 Score: 116
Period size: 16 Copynumber: 13.0 Consensus size: 16
55880881 TCACATAATT
*
55880891 TACATAATTTACATAA
1 TACATAACTTACATAA
55880907 TACATAACTTACATAA
1 TACATAACTTACATAA
** * ** *
55880923 TTTA-AAGTTTGA-AT
1 TACATAACTTACATAA
*
55880937 TTCATAACTTACATAA
1 TACATAACTTACATAA
55880953 TTTACATAACTTACATAA
1 --TACATAACTTACATAA
55880971 TACATAACTTACATAA
1 TACATAACTTACATAA
*
55880987 TACATGACTTACATAA
1 TACATAACTTACATAA
* * * *
55881003 TTTAAAGATCAAATTTCATTAC
1 --T--ACAT-AACTTACA-TAA
** ** *
55881025 TTTATGTCGTACATAA
1 TACATAACTTACATAA
*
55881041 TACATAACTTAAATAA
1 TACATAACTTACATAA
55881057 TTTACATAACTTACATAA
1 --TACATAACTTACATAA
* * *
55881075 TACATAAATATATATCA
1 TACATAACT-TACATAA
55881092 TATCATAACTTACATAA
1 TA-CATAACTTACATAA
55881109 CTTAATTATA
Statistics
Matches: 148, Mismatches: 40, Indels: 27
0.69 0.19 0.13
Matches are distributed among these distances:
14 4 0.03
15 10 0.07
16 69 0.47
17 15 0.10
18 39 0.26
20 4 0.03
21 5 0.03
22 2 0.01
ACGTcount: A:0.45, C:0.15, G:0.03, T:0.37
Consensus pattern (16 bp):
TACATAACTTACATAA
Found at i:55880977 original size:80 final size:85
Alignment explanation
Indices: 55880885--55881081 Score: 242
Period size: 80 Copynumber: 2.3 Consensus size: 85
55880875 AGCAACTCAC
* * **
55880885 ATAATTTACATAATTTACATAATACATAACTTACATAATTTAAAGTTTGAATTTCATAAC-TTA-
1 ATAA-TTACATAACTTACATAATACATAACTTACATAATTTAAAGATCAAATTTCATAACTTTAT
* *
55880948 CATA-AT-TTACATAACTTAC
65 CATACATAATACATAACTTAA
* *
55880967 ATAA-TACATAACTTACATAATACATGACTTACATAATTTAAAGATCAAATTTCATTACTTTATG
1 ATAATTACATAACTTACATAATACATAACTTACATAATTTAAAGATCAAATTTCATAACTTTA--
*
55881031 TCGTACATAATACATAACTTAA
64 TCATACATAATACATAACTTAA
55881053 ATAATTTACATAACTTACATAATACATAA
1 ATAA-TTACATAACTTACATAATACATAA
55881082 ATATATATCA
Statistics
Matches: 97, Mismatches: 10, Indels: 10
0.83 0.09 0.09
Matches are distributed among these distances:
80 48 0.49
81 3 0.03
82 4 0.04
84 3 0.03
85 2 0.02
86 15 0.15
88 22 0.23
ACGTcount: A:0.45, C:0.14, G:0.03, T:0.38
Consensus pattern (85 bp):
ATAATTACATAACTTACATAATACATAACTTACATAATTTAAAGATCAAATTTCATAACTTTATC
ATACATAATACATAACTTAA
Found at i:55881065 original size:9 final size:9
Alignment explanation
Indices: 55881041--55881112 Score: 60
Period size: 9 Copynumber: 8.2 Consensus size: 9
55881031 TCGTACATAA
55881041 TACATAACT
1 TACATAACT
* *
55881050 TAAATAATT
1 TACATAACT
55881059 TACATAACT
1 TACATAACT
55881068 TACATAA--
1 TACATAACT
*
55881075 TACATAA-A
1 TACATAACT
* * *
55881083 TATATATCA
1 TACATAACT
55881092 TATCATAACT
1 TA-CATAACT
55881102 TACATAACT
1 TACATAACT
55881111 TA
1 TA
55881113 ATTATACTTA
Statistics
Matches: 51, Mismatches: 9, Indels: 6
0.77 0.14 0.09
Matches are distributed among these distances:
7 7 0.14
8 5 0.10
9 33 0.65
10 6 0.12
ACGTcount: A:0.49, C:0.15, G:0.00, T:0.36
Consensus pattern (9 bp):
TACATAACT
Found at i:55881099 original size:34 final size:34
Alignment explanation
Indices: 55881034--55881108 Score: 98
Period size: 34 Copynumber: 2.2 Consensus size: 34
55881024 CTTTATGTCG
* *
55881034 TACATAATACATAACTTAAATAATTTACATAACT
1 TACATAATACATAAATTAAATAATATACATAACT
* *
55881068 TACATAATACATAAATATATATCATAT-CATAACT
1 TACATAATACATAAAT-TAAATAATATACATAACT
55881102 TACATAA
1 TACATAA
55881109 CTTAATTATA
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
34 29 0.81
35 7 0.19
ACGTcount: A:0.51, C:0.15, G:0.00, T:0.35
Consensus pattern (34 bp):
TACATAATACATAAATTAAATAATATACATAACT
Found at i:55885962 original size:17 final size:15
Alignment explanation
Indices: 55885942--55885979 Score: 51
Period size: 14 Copynumber: 2.5 Consensus size: 15
55885932 TTCTTTCAAA
55885942 TATTAATAACTTTCTAC
1 TATTAA-AA-TTTCTAC
55885959 TATT-AAATTTCTAC
1 TATTAAAATTTCTAC
55885973 TATTAAA
1 TATTAAA
55885980 TAATATTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
14 11 0.55
15 4 0.20
16 1 0.05
17 4 0.20
ACGTcount: A:0.39, C:0.13, G:0.00, T:0.47
Consensus pattern (15 bp):
TATTAAAATTTCTAC
Found at i:55885971 original size:14 final size:14
Alignment explanation
Indices: 55885952--55885980 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
55885942 TATTAATAAC
55885952 TTTCTACTATTAAA
1 TTTCTACTATTAAA
55885966 TTTCTACTATTAAA
1 TTTCTACTATTAAA
55885980 T
1 T
55885981 AATATTTTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.34, C:0.14, G:0.00, T:0.52
Consensus pattern (14 bp):
TTTCTACTATTAAA
Found at i:55886161 original size:13 final size:14
Alignment explanation
Indices: 55886145--55886173 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
55886135 TTCTAAATAT
55886145 TTATAA-TGTTTAA
1 TTATAATTGTTTAA
55886158 TTATAATTGTTTAA
1 TTATAATTGTTTAA
55886172 TT
1 TT
55886174 CAATTCATCA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.40
14 9 0.60
ACGTcount: A:0.34, C:0.00, G:0.07, T:0.59
Consensus pattern (14 bp):
TTATAATTGTTTAA
Found at i:55886623 original size:21 final size:21
Alignment explanation
Indices: 55886599--55886650 Score: 86
Period size: 21 Copynumber: 2.5 Consensus size: 21
55886589 AGGCAGCAGA
*
55886599 GAGGGAGGCAGCGGCACCAAC
1 GAGGGAGGCAGCGACACCAAC
*
55886620 GAGGGAGGCAGCGACAGCAAC
1 GAGGGAGGCAGCGACACCAAC
55886641 GAGGGAGGCA
1 GAGGGAGGCA
55886651 AAGGCAAGAG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.31, C:0.23, G:0.46, T:0.00
Consensus pattern (21 bp):
GAGGGAGGCAGCGACACCAAC
Found at i:55886966 original size:31 final size:31
Alignment explanation
Indices: 55886931--55886997 Score: 80
Period size: 31 Copynumber: 2.2 Consensus size: 31
55886921 TTTGTTGTAT
* *
55886931 TTTTATGCTAAATTTGCTGTTTTTGGCTGCA
1 TTTTATACTAAATTTGCTGTATTTGGCTGCA
* * * *
55886962 TTTTATACTATATTTGTTGTATTTGGTTGGA
1 TTTTATACTAAATTTGCTGTATTTGGCTGCA
55886993 TTTTA
1 TTTTA
55886998 ATGCAGGAAG
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.18, C:0.07, G:0.18, T:0.57
Consensus pattern (31 bp):
TTTTATACTAAATTTGCTGTATTTGGCTGCA
Found at i:55887176 original size:42 final size:44
Alignment explanation
Indices: 55887072--55887186 Score: 153
Period size: 44 Copynumber: 2.7 Consensus size: 44
55887062 GTGGTAAAAG
* * *
55887072 TGCCGCTAAAAGCCATGACTTTTAGCAGTGCTTTCCCAACAAAT
1 TGCCGCTAAAAGCCATGGCTTTTAGCGGCGCTTTCCCAACAAAT
* **
55887116 TGCAGCTAAAAGCCATGGCTTTTAGCGGCGCTTT-TTAACAAA-
1 TGCCGCTAAAAGCCATGGCTTTTAGCGGCGCTTTCCCAACAAAT
*
55887158 TGCCGCTAAATGCCATGGCTTTTAGCGGC
1 TGCCGCTAAAAGCCATGGCTTTTAGCGGC
55887187 TTTTTTTTAA
Statistics
Matches: 63, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
42 27 0.43
43 6 0.10
44 30 0.48
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (44 bp):
TGCCGCTAAAAGCCATGGCTTTTAGCGGCGCTTTCCCAACAAAT
Found at i:55887193 original size:42 final size:42
Alignment explanation
Indices: 55887072--55887192 Score: 145
Period size: 42 Copynumber: 2.8 Consensus size: 42
55887062 GTGGTAAAAG
* ***
55887072 TGCCGCTAAAAGCCATGACTTTTAGCAGTGCTTTCCCAACAAAT
1 TGCCGCTAAAAGCCATGGCTTTTAGC-G-GCTTTTTTAACAAAT
* *
55887116 TGCAGCTAAAAGCCATGGCTTTTAGCGGCGCTTTTTAACAAA-
1 TGCCGCTAAAAGCCATGGCTTTTAGCGGC-TTTTTTAACAAAT
*
55887158 TGCCGCTAAATGCCATGGCTTTTAGCGGCTTTTTT
1 TGCCGCTAAAAGCCATGGCTTTTAGCGGCTTTTTT
55887193 TTAAGTAAAC
Statistics
Matches: 67, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
41 5 0.07
42 29 0.43
43 9 0.13
44 24 0.36
ACGTcount: A:0.25, C:0.24, G:0.20, T:0.31
Consensus pattern (42 bp):
TGCCGCTAAAAGCCATGGCTTTTAGCGGCTTTTTTAACAAAT
Found at i:55902859 original size:21 final size:21
Alignment explanation
Indices: 55902823--55902874 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
55902813 ATATAAGCAT
**
55902823 GAAATTAAAAAGAAAAACTAAA
1 GAAATTAAAACTAAAAAC-AAA
*
55902845 -AATTTAAAACTAAAAACAAA
1 GAAATTAAAACTAAAAACAAA
55902865 GAAATTAAAA
1 GAAATTAAAA
55902875 TAACTGAAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
20 3 0.12
21 22 0.88
ACGTcount: A:0.71, C:0.06, G:0.06, T:0.17
Consensus pattern (21 bp):
GAAATTAAAACTAAAAACAAA
Found at i:55914580 original size:46 final size:45
Alignment explanation
Indices: 55914391--55914609 Score: 158
Period size: 46 Copynumber: 4.7 Consensus size: 45
55914381 ATTGTGGGCT
* * * * *
55914391 AGTGTAAGACGTGTCTGGGACATGCATCGACCAC-ATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCTACGA-GATG-TAGCC
* * *
55914437 TGTGTAAGACCATGTCTAGGACATGGCATCGGC-ATCGAGATG-AGTGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTA-CGAGATGTA--GCC
** * * *
55914485 AGTAAAAGACATGTCCGGGACATGCATAGGCCT-CGAGATGTAAACC
1 AGTGTAAGACATGTCTGGGACATGCATCGG-CTACGAGATGT-AGCC
*
55914531 AGTGTAAGACATGTCTGGGACATGCATCGGCTACGAGATGATAGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCTACGAGATG-TAGCC
* *
55914577 AGTGTAAGACCATATCTGGGATATGGCATCGGC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
55914610 ACCCTACCCC
Statistics
Matches: 137, Mismatches: 22, Indels: 26
0.74 0.12 0.14
Matches are distributed among these distances:
45 2 0.01
46 67 0.49
47 39 0.28
48 28 0.20
49 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.22
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCTACGAGATGTAGCC
Found at i:55915709 original size:21 final size:22
Alignment explanation
Indices: 55915670--55915710 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
55915660 TCAAATTGGT
55915670 CACACAGGCGTGTTGCCCCTCC
1 CACACAGGCGTGTTGCCCCTCC
*
55915692 CACACGGGCGTG-TGCCCCT
1 CACACAGGCGTGTTGCCCCT
55915711 ATGTCAAGTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.12, C:0.44, G:0.27, T:0.17
Consensus pattern (22 bp):
CACACAGGCGTGTTGCCCCTCC
Found at i:55938433 original size:14 final size:14
Alignment explanation
Indices: 55938414--55938445 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
55938404 AACATAGTAA
55938414 TAAACAATTTATGC
1 TAAACAATTTATGC
55938428 TAAACAATTTATGC
1 TAAACAATTTATGC
55938442 TAAA
1 TAAA
55938446 TAAGTAAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.47, C:0.12, G:0.06, T:0.34
Consensus pattern (14 bp):
TAAACAATTTATGC
Found at i:55940016 original size:37 final size:37
Alignment explanation
Indices: 55939966--55940037 Score: 126
Period size: 37 Copynumber: 1.9 Consensus size: 37
55939956 TTTTTTAAAA
**
55939966 TCTTTTTTCAACAACCTGAGATTATCTTCTCCTCTGT
1 TCTTTTTTCAACAACCCAAGATTATCTTCTCCTCTGT
55940003 TCTTTTTTCAACAACCCAAGATTATCTTCTCCTCT
1 TCTTTTTTCAACAACCCAAGATTATCTTCTCCTCT
55940038 TTTTTAGGCA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.21, C:0.29, G:0.06, T:0.44
Consensus pattern (37 bp):
TCTTTTTTCAACAACCCAAGATTATCTTCTCCTCTGT
Found at i:55941501 original size:21 final size:21
Alignment explanation
Indices: 55941476--55941518 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
55941466 TAAATTGAAA
55941476 ACTTAGATTGAGGAAAGCAAT
1 ACTTAGATTGAGGAAAGCAAT
55941497 ACTTAGATTGAGGAAAGCAAT
1 ACTTAGATTGAGGAAAGCAAT
55941518 A
1 A
55941519 ATTAAAAGGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.44, C:0.09, G:0.23, T:0.23
Consensus pattern (21 bp):
ACTTAGATTGAGGAAAGCAAT
Found at i:55947180 original size:20 final size:20
Alignment explanation
Indices: 55947143--55947181 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
55947133 TATATGTATA
*
55947143 CAAAAAATATTTTCAAATAT
1 CAAAAAATATATTCAAATAT
55947163 CAAAAAATGATATT-AAATA
1 CAAAAAAT-ATATTCAAATA
55947182 AATTTCAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.59, C:0.08, G:0.03, T:0.31
Consensus pattern (20 bp):
CAAAAAATATATTCAAATAT
Found at i:55957663 original size:43 final size:47
Alignment explanation
Indices: 55957589--55957700 Score: 110
Period size: 47 Copynumber: 2.4 Consensus size: 47
55957579 CGATTTGGTT
* * * *
55957589 ATATATT-GCAACTAGTGTGTGAGACTGAGATAGCTTC-G-GCTA-A-
1 ATATATTGGC-ACTAGTGTGCGAGACTCAGATAACTTCAGTGATATAC
*
55957632 ATATATTGGCACTAAGTGTGCGAGAC-CAGATAACTTCAGTTATATAC
1 ATATATTGGCACT-AGTGTGCGAGACTCAGATAACTTCAGTGATATAC
55957679 ATATATTGGCACTTAGTGTGCG
1 ATATATTGGCAC-TAGTGTGCG
55957701 TGATTGAGAT
Statistics
Matches: 57, Mismatches: 5, Indels: 10
0.79 0.07 0.14
Matches are distributed among these distances:
43 19 0.33
44 14 0.25
45 2 0.04
46 1 0.02
47 20 0.35
48 1 0.02
ACGTcount: A:0.30, C:0.15, G:0.23, T:0.31
Consensus pattern (47 bp):
ATATATTGGCACTAGTGTGCGAGACTCAGATAACTTCAGTGATATAC
Found at i:55959145 original size:40 final size:40
Alignment explanation
Indices: 55959096--55959205 Score: 114
Period size: 40 Copynumber: 2.8 Consensus size: 40
55959086 CAGAATTTAA
* *
55959096 CCGGATATAGCT-ACTCATTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCATACAAATGCCTTCGGGACATAAC
* * * *
55959136 CCGGTTATAGTAACTCGTACAAATGCCTTTGGGACTTAAC
1 CCGGATATAGTAACTCATACAAATGCCTTCGGGACATAAC
* ** *
55959176 CCGGATTTAGTAACTCGCACCAATGCCTTC
1 CCGGATATAGTAACTCATACAAATGCCTTC
55959206 AGGCTTAGCT
Statistics
Matches: 58, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
39 1 0.02
40 57 0.98
ACGTcount: A:0.26, C:0.27, G:0.19, T:0.27
Consensus pattern (40 bp):
CCGGATATAGTAACTCATACAAATGCCTTCGGGACATAAC
Found at i:55965914 original size:47 final size:47
Alignment explanation
Indices: 55965853--55966433 Score: 995
Period size: 47 Copynumber: 12.4 Consensus size: 47
55965843 CAGCCAAGAC
55965853 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
55965900 AGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
55965947 AGTGTATATATGT-ATAAGGCCTAAT-GCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
55965992 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
55966039 AGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
55966086 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
55966133 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
55966180 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
55966227 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
55966274 AGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
55966321 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * * * * * *
55966368 AGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
55966415 AGTGCATAAATGTGATAAG
1 AGTGTATATATGTGATAAG
55966434 TCCCGAAGGG
Statistics
Matches: 509, Mismatches: 23, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
45 33 0.06
46 24 0.05
47 452 0.89
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:55966608 original size:37 final size:37
Alignment explanation
Indices: 55966552--55966630 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
55966542 CCGAGCTCTA
* *
55966552 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
55966589 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
55966626 AAGAC
1 AAGAC
55966631 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:55985714 original size:30 final size:30
Alignment explanation
Indices: 55985680--55985740 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
55985670 TCCTTAACTC
55985680 AAACTTTTGAAAAATTACAATTTTGCCCCT
1 AAACTTTTGAAAAATTACAATTTTGCCCCT
* * * *
55985710 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTTGAAAAATTACAATTTTGCCCCT
55985740 A
1 A
55985741 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.31, C:0.23, G:0.07, T:0.39
Consensus pattern (30 bp):
AAACTTTTGAAAAATTACAATTTTGCCCCT
Found at i:55986755 original size:48 final size:48
Alignment explanation
Indices: 55986644--55986863 Score: 200
Period size: 46 Copynumber: 4.6 Consensus size: 48
55986634 TGATATTTGT
* * * *
55986644 GCTAGTGTAAGACATGTCTAGGACATGCATCGGCCAC-A-TTATGC-G
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATACAG
*
55986689 AGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATACAG
1 -GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATACAG
* * * * ** *
55986738 GCTAGTGTAAGACATGTCTAGGACATGCATTGGCATTGAGA-CGAGA-
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATACAG
* * * * *
55986784 GCTAGTGTAAAACTTGTCTGGGACATGCATCAGCCTTGAGATATACAC
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATACAG
* *
55986832 GCTAGAGTAAGACCTGT-TCGGGACATGGCATC
1 GCTAGTGTAAGACATGTCT-GGGACAT-GCATC
55986864 AGCTTGTTGT
Statistics
Matches: 142, Mismatches: 25, Indels: 11
0.80 0.14 0.06
Matches are distributed among these distances:
46 69 0.49
47 6 0.04
48 61 0.43
49 6 0.04
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (48 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATACAG
Found at i:55986802 original size:94 final size:92
Alignment explanation
Indices: 55986644--55986844 Score: 262
Period size: 94 Copynumber: 2.1 Consensus size: 92
55986634 TGATATTTGT
*
55986644 GCTAGTGTAAGACATGTCTAGGACATGCATCGGCCACATTATGCGAGCCAGTGTAAGACATGTCT
1 GCTAGTGTAAGACATGTCTAGGACATGCATCGG-C-CATTATGCGAGCCAGTGTAAAACATGTCT
* *
55986709 GGGACATGCATCGGCCTCGAGATATACAG
64 GGGACATGCATCAGCCTCGAGATATACAC
* * *
55986738 GCTAGTGTAAGACATGTCTAGGACATGCATTGG-CATTGA-GACGAGAGCTAGTGTAAAACTTGT
1 GCTAGTGTAAGACATGTCTAGGACATGCATCGGCCATT-ATG-C--GAGCCAGTGTAAAACATGT
*
55986801 CTGGGACATGCATCAGCCTTGAGATATACAC
62 CTGGGACATGCATCAGCCTCGAGATATACAC
*
55986832 GCTAGAGTAAGAC
1 GCTAGTGTAAGAC
55986845 CTGTTCGGGA
Statistics
Matches: 95, Mismatches: 8, Indels: 8
0.86 0.07 0.07
Matches are distributed among these distances:
91 5 0.05
92 2 0.02
94 88 0.93
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.23
Consensus pattern (92 bp):
GCTAGTGTAAGACATGTCTAGGACATGCATCGGCCATTATGCGAGCCAGTGTAAAACATGTCTGG
GACATGCATCAGCCTCGAGATATACAC
Found at i:55986936 original size:49 final size:49
Alignment explanation
Indices: 55986877--55987008 Score: 142
Period size: 49 Copynumber: 2.7 Consensus size: 49
55986867 TTGTTGTGTG
* *
55986877 TCAGTATAAGACTTGTCTGGGACATGACATCGACAC-CGATAGATGAGAGC
1 TCAGTGTAAGACTTGTCTGGGACATGACATCGAC-CTCGATAGATGA-AAC
* * * * * *
55986927 T-AGTGTAAGACCTGTCTGGGGCACGACATCGACCTCTATATATGAAAT
1 TCAGTGTAAGACTTGTCTGGGACATGACATCGACCTCGATAGATGAAAC
* *
55986975 TCAGTGTAAGACTTATCTGGGACATGGCATCGAC
1 TCAGTGTAAGACTTGTCTGGGACATGACATCGAC
55987009 TTTGATGTGC
Statistics
Matches: 67, Mismatches: 13, Indels: 5
0.79 0.15 0.06
Matches are distributed among these distances:
48 3 0.04
49 63 0.94
50 1 0.01
ACGTcount: A:0.30, C:0.20, G:0.25, T:0.25
Consensus pattern (49 bp):
TCAGTGTAAGACTTGTCTGGGACATGACATCGACCTCGATAGATGAAAC
Found at i:55996292 original size:37 final size:37
Alignment explanation
Indices: 55996242--55996320 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
55996232 TTATTACGAA
* * * *
55996242 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACAAGAAGTCATCGG
*
55996279 GTCTTACCCGGACAAAATCCCCACAAGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACAAGAAGTCATCGG
55996316 GTCTT
1 GTCTT
55996321 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.27, C:0.30, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACAAGAAGTCATCGG
Found at i:55996517 original size:47 final size:47
Alignment explanation
Indices: 55996439--55997000 Score: 901
Period size: 47 Copynumber: 11.7 Consensus size: 47
55996429 CCCTTCGGGA
* * * * * *
55996439 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
55996486 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
55996533 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
55996582 CTTATCACATATATACACTTTCACATTCATCACATCGTCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
55996629 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
55996678 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
55996727 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
55996776 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
55996823 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
55996872 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
55996919 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
55996966 CTTATCTCATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATTCATCACAT
55997001 AGAATCCTAA
Statistics
Matches: 491, Mismatches: 17, Indels: 14
0.94 0.03 0.03
Matches are distributed among these distances:
46 1 0.00
47 253 0.52
49 237 0.48
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:55996564 original size:49 final size:49
Alignment explanation
Indices: 55996439--55996979 Score: 908
Period size: 49 Copynumber: 11.3 Consensus size: 49
55996429 CCCTTCGGGA
* * * * *
55996439 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
55996486 CCTGTCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
55996533 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
55996582 CTTATCAC--ATATATACACTTTCACATTCATCACATCGTCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
55996629 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
55996678 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
55996727 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
55996776 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
55996823 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
55996872 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
55996919 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
55996966 CTTATCTCATATAT
1 CTTATCACATATAT
55996980 GCATGTTCAC
Statistics
Matches: 470, Mismatches: 14, Indels: 18
0.94 0.03 0.04
Matches are distributed among these distances:
46 1 0.00
47 228 0.49
49 241 0.51
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.33
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:55996601 original size:96 final size:96
Alignment explanation
Indices: 55996439--55997000 Score: 954
Period size: 96 Copynumber: 5.9 Consensus size: 96
55996429 CCCTTCGGGA
* * * * * * *
55996439 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
55996502 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
55996533 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
55996598 ACTTTCACATTCATCACATCGTCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
55996629 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATAT
55996694 ACACTTTCACATTCATCACATCGGCCATTAGGC
64 ACACTTTCACATTCATCACATCGGCCATTAGGC
*
55996727 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
55996792 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
55996823 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
55996888 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
* *
55996919 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCTCATATATGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
55996982 A-TGTTCACATCCATCACAT
66 ACT-TTCACATTCATCACAT
55997001 AGAATCCTAA
Statistics
Matches: 449, Mismatches: 14, Indels: 10
0.95 0.03 0.02
Matches are distributed among these distances:
93 1 0.00
94 79 0.18
95 1 0.00
96 274 0.61
98 94 0.21
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (96 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:55999267 original size:56 final size:56
Alignment explanation
Indices: 55999181--55999300 Score: 215
Period size: 56 Copynumber: 2.1 Consensus size: 56
55999171 TAATATTTTA
55999181 TTGCCCATGCCCTTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCCCTTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
*
55999237 TTGCCCATG-CTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCCCT-TTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
55999293 TTGCCCAT
1 TTGCCCAT
55999301 CATCCCTTGT
Statistics
Matches: 62, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
55 2 0.03
56 60 0.97
ACGTcount: A:0.23, C:0.25, G:0.09, T:0.43
Consensus pattern (56 bp):
TTGCCCATGCCCTTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:56002279 original size:24 final size:24
Alignment explanation
Indices: 56002247--56002323 Score: 136
Period size: 24 Copynumber: 3.2 Consensus size: 24
56002237 AAGGCTGTCA
*
56002247 GGAGAGGATTTAGGAGCAGATAAG
1 GGAGAGGATTTAGGAGCTGATAAG
56002271 GGAGAGGATTTAGGAGCTGATAAG
1 GGAGAGGATTTAGGAGCTGATAAG
*
56002295 GGAGAGGATTTAGGAGCTGATTAG
1 GGAGAGGATTTAGGAGCTGATAAG
56002319 GGAGA
1 GGAGA
56002324 ATGGTGTTTG
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 51 1.00
ACGTcount: A:0.34, C:0.04, G:0.43, T:0.19
Consensus pattern (24 bp):
GGAGAGGATTTAGGAGCTGATAAG
Found at i:56003794 original size:27 final size:26
Alignment explanation
Indices: 56003754--56003864 Score: 134
Period size: 27 Copynumber: 4.2 Consensus size: 26
56003744 AGGAAGCGTC
*
56003754 CTGGTGGCTA-TGCCACAATTATCTGAT
1 CTGGTGGC-ACTGCCAC-ATTATCTGTT
56003781 CTGGTGGCACTGCCACATATATCTGTT
1 CTGGTGGCACTGCCACAT-TATCTGTT
* *
56003808 CTGGTGGCTCTGCCACAACTATCTGTT
1 CTGGTGGCACTGCCAC-ATTATCTGTT
* *
56003835 CTGGTGACACTGTCACATTATCTGTT
1 CTGGTGGCACTGCCACATTATCTGTT
56003861 CTGG
1 CTGG
56003865 CAGCCATGCT
Statistics
Matches: 74, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
26 16 0.22
27 57 0.77
28 1 0.01
ACGTcount: A:0.18, C:0.25, G:0.23, T:0.34
Consensus pattern (26 bp):
CTGGTGGCACTGCCACATTATCTGTT
Found at i:56003838 original size:54 final size:53
Alignment explanation
Indices: 56003754--56003864 Score: 168
Period size: 54 Copynumber: 2.1 Consensus size: 53
56003744 AGGAAGCGTC
* *
56003754 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCACTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAACTATCTGATCTGGTGACACTGCCACAT-TATCTGTT
* * *
56003808 CTGGTGGCTCTGCCACAACTATCTGTTCTGGTGACACTGTCACATTATCTGTT
1 CTGGTGGCTATGCCACAACTATCTGATCTGGTGACACTGCCACATTATCTGTT
56003861 CTGG
1 CTGG
56003865 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 5, Indels: 1
0.90 0.09 0.02
Matches are distributed among these distances:
53 12 0.23
54 40 0.77
ACGTcount: A:0.18, C:0.25, G:0.23, T:0.34
Consensus pattern (53 bp):
CTGGTGGCTATGCCACAACTATCTGATCTGGTGACACTGCCACATTATCTGTT
Found at i:56010163 original size:24 final size:24
Alignment explanation
Indices: 56010136--56010212 Score: 136
Period size: 24 Copynumber: 3.2 Consensus size: 24
56010126 AAGGCTGTCA
56010136 GGAGAGGATTTAGGAGCTGATAAG
1 GGAGAGGATTTAGGAGCTGATAAG
56010160 GGAGAGGATTTAGGAGCTGATAAG
1 GGAGAGGATTTAGGAGCTGATAAG
* *
56010184 GGAGAGCATTTAGGAGCTGATTAG
1 GGAGAGGATTTAGGAGCTGATAAG
56010208 GGAGA
1 GGAGA
56010213 ACGGTGTTGG
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 51 1.00
ACGTcount: A:0.32, C:0.05, G:0.42, T:0.21
Consensus pattern (24 bp):
GGAGAGGATTTAGGAGCTGATAAG
Found at i:56011681 original size:27 final size:26
Alignment explanation
Indices: 56011641--56011751 Score: 134
Period size: 27 Copynumber: 4.2 Consensus size: 26
56011631 AGGAAGCGTC
*
56011641 CTGGTGGCTA-TGCCACAATTATCTGAT
1 CTGGTGGC-ACTGCCAC-ATTATCTGTT
56011668 CTGGTGGCACTGCCACATATATCTGTT
1 CTGGTGGCACTGCCACAT-TATCTGTT
* *
56011695 CTGGTGGCTCTGCCACAACTATCTGTT
1 CTGGTGGCACTGCCAC-ATTATCTGTT
* *
56011722 CTGGTGACACTGTCACATTATCTGTT
1 CTGGTGGCACTGCCACATTATCTGTT
56011748 CTGG
1 CTGG
56011752 CAGCCATGCT
Statistics
Matches: 74, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
26 16 0.22
27 57 0.77
28 1 0.01
ACGTcount: A:0.18, C:0.25, G:0.23, T:0.34
Consensus pattern (26 bp):
CTGGTGGCACTGCCACATTATCTGTT
Found at i:56011725 original size:54 final size:53
Alignment explanation
Indices: 56011641--56011751 Score: 168
Period size: 54 Copynumber: 2.1 Consensus size: 53
56011631 AGGAAGCGTC
* *
56011641 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCACTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAACTATCTGATCTGGTGACACTGCCACAT-TATCTGTT
* * *
56011695 CTGGTGGCTCTGCCACAACTATCTGTTCTGGTGACACTGTCACATTATCTGTT
1 CTGGTGGCTATGCCACAACTATCTGATCTGGTGACACTGCCACATTATCTGTT
56011748 CTGG
1 CTGG
56011752 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 5, Indels: 1
0.90 0.09 0.02
Matches are distributed among these distances:
53 12 0.23
54 40 0.77
ACGTcount: A:0.18, C:0.25, G:0.23, T:0.34
Consensus pattern (53 bp):
CTGGTGGCTATGCCACAACTATCTGATCTGGTGACACTGCCACATTATCTGTT
Found at i:56015279 original size:26 final size:27
Alignment explanation
Indices: 56015226--56015279 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
56015216 GTGAGCAAAA
*
56015226 TACCCCTATAGGGTAAAATGACTATTT
1 TACCCCTAGAGGGTAAAATGACTATTT
* *
56015253 TACCCCTCGAGGGT-AAATGACTGTTT
1 TACCCCTAGAGGGTAAAATGACTATTT
56015279 T
1 T
56015280 GTGCTATGAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 12 0.50
27 12 0.50
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.33
Consensus pattern (27 bp):
TACCCCTAGAGGGTAAAATGACTATTT
Found at i:56015419 original size:27 final size:27
Alignment explanation
Indices: 56015380--56015507 Score: 186
Period size: 27 Copynumber: 4.8 Consensus size: 27
56015370 GGAGGAAGTG
*
56015380 TACTG-TACTGGTGGCTTTGCCACATA
1 TACTGCTATTGGTGGCTTTGCCACATA
56015406 TACTGCTATTGGTGGCTTTGCCACATA
1 TACTGCTATTGGTGGCTTTGCCACATA
56015433 TACTGCTATTGGTGGCTTTGCCACATA
1 TACTGCTATTGGTGGCTTTGCCACATA
** * *
56015460 TACTATTACTGGTGTCTTTGCCACATA
1 TACTGCTATTGGTGGCTTTGCCACATA
* *
56015487 TACTGATATTGGTAGCTTTGC
1 TACTGCTATTGGTGGCTTTGC
56015508 TGCGTTACTG
Statistics
Matches: 91, Mismatches: 10, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
26 5 0.05
27 86 0.95
ACGTcount: A:0.20, C:0.21, G:0.21, T:0.38
Consensus pattern (27 bp):
TACTGCTATTGGTGGCTTTGCCACATA
Found at i:56017374 original size:16 final size:16
Alignment explanation
Indices: 56017353--56017385 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
56017343 GATTTTCGAT
56017353 ATCTGTTCTGCGTGTA
1 ATCTGTTCTGCGTGTA
56017369 ATCTGTTCTGCGTGTA
1 ATCTGTTCTGCGTGTA
56017385 A
1 A
56017386 GACCACGTCT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.15, C:0.18, G:0.24, T:0.42
Consensus pattern (16 bp):
ATCTGTTCTGCGTGTA
Found at i:56029337 original size:39 final size:40
Alignment explanation
Indices: 56029292--56029459 Score: 106
Period size: 40 Copynumber: 4.2 Consensus size: 40
56029282 CGGGGTTTAT
* * *
56029292 CCGGATATAACCACTCGCA-CAAGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
*** * *
56029331 CCGGATATGGTCACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
** * * * **
56029371 CCGGATATAGTCGCTAGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGA-CTTAAC
* ** * * * *
56029411 CCGGATGTAGTCGCTTAGCACAAAAGCCTTCGGGACTTAGC
1 CCGGATATAACCAC-TAGCATAAAGGCCTTCGGGACTTAAC
56029452 CCGGATAT
1 CCGGATAT
56029460 CATTCGAGTA
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
39 18 0.17
40 61 0.56
41 27 0.25
42 3 0.03
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (40 bp):
CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
Found at i:56029442 original size:41 final size:40
Alignment explanation
Indices: 56029315--56029459 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
56029305 CTCGCACAAG
* * * * *
56029315 GCCTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
56029355 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* * *
56029395 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
56029436 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
56029460 CATTCGAGTA
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 3 0.03
40 59 0.64
41 27 0.29
42 3 0.03
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:56029950 original size:38 final size:38
Alignment explanation
Indices: 56029908--56029983 Score: 143
Period size: 38 Copynumber: 2.0 Consensus size: 38
56029898 CAAGAACTCC
*
56029908 TTCCTCCTTCCTTAGAATTTTCGGTCAAAAGAAATGAA
1 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
56029946 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
1 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
56029984 AAAGGATGAA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.32, C:0.22, G:0.13, T:0.33
Consensus pattern (38 bp):
TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
Found at i:56031985 original size:27 final size:27
Alignment explanation
Indices: 56031955--56032094 Score: 135
Period size: 27 Copynumber: 5.3 Consensus size: 27
56031945 TTAGTTTACC
**
56031955 AAATTACCAAAATACCCCT-AATTTGTA
1 AAATTACTGAAATA-CCCTCAATTTGTA
* * *
56031982 AAATGACTGAAATA--CTCAGTTTGCA
1 AAATTACTGAAATACCCTCAATTTGTA
*
56032007 AAATTACTGAAATACCCTCGATTTGTA
1 AAATTACTGAAATACCCTCAATTTGTA
*
56032034 AAATTACTGAAATACCCTCAACTTGTA
1 AAATTACTGAAATACCCTCAATTTGTA
* * **
56032061 AAATTAC-CAAAGTACCCTCGATTTACA
1 AAATTACTGAAA-TACCCTCAATTTGTA
56032088 AAATTAC
1 AAATTAC
56032095 CGTTTTACCC
Statistics
Matches: 93, Mismatches: 16, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
24 2 0.02
25 19 0.20
26 3 0.03
27 69 0.74
ACGTcount: A:0.41, C:0.21, G:0.09, T:0.29
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCAATTTGTA
Found at i:56032031 original size:52 final size:53
Alignment explanation
Indices: 56031955--56032084 Score: 149
Period size: 52 Copynumber: 2.5 Consensus size: 53
56031945 TTAGTTTACC
* * **
56031955 AAATTACCAAAATACCC-CTAATTTGTAAAATGACTGAAATA-CTCAGTTTGCA
1 AAATTACCAAAGTACCCTC-GATTTGTAAAATGACTGAAATACCTCAACTTGCA
* * *
56032007 AAATTACTGAAA-TACCCTCGATTTGTAAAATTACTGAAATACCCTCAACTTGTA
1 AAATTAC-CAAAGTACCCTCGATTTGTAAAATGACTGAAATA-CCTCAACTTGCA
56032061 AAATTACCAAAGTACCCTCGATTT
1 AAATTACCAAAGTACCCTCGATTT
56032085 ACAAAATTAC
Statistics
Matches: 66, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
52 32 0.48
53 7 0.11
54 27 0.41
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (53 bp):
AAATTACCAAAGTACCCTCGATTTGTAAAATGACTGAAATACCTCAACTTGCA
Found at i:56032095 original size:27 final size:26
Alignment explanation
Indices: 56032005--56032131 Score: 101
Period size: 27 Copynumber: 4.7 Consensus size: 26
56031995 ACTCAGTTTG
* *
56032005 CAAAATTACTGAAATACCCTCGATTTG
1 CAAAATTAC-CAAATACCCTCGATTTA
* * * * *
56032032 TAAAATTACTGAAATACCCTCAACTTG
1 CAAAATTAC-CAAATACCCTCGATTTA
*
56032059 TAAAATTACCAAAGTACCCTCGATTTA
1 CAAAATTACCAAA-TACCCTCGATTTA
*** *
56032086 CAAAATTACCGTTTTACCCTTGATTTA
1 CAAAATTACC-AAATACCCTCGATTTA
56032113 CAAAATTACCGAAATACCC
1 CAAAATTACC-AAATACCC
56032132 CTGTAGGGTA
Statistics
Matches: 83, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
26 3 0.04
27 80 0.96
ACGTcount: A:0.39, C:0.24, G:0.08, T:0.30
Consensus pattern (26 bp):
CAAAATTACCAAATACCCTCGATTTA
Found at i:56032146 original size:27 final size:27
Alignment explanation
Indices: 56032116--56032256 Score: 194
Period size: 27 Copynumber: 5.3 Consensus size: 27
56032106 TGATTTACAA
56032116 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
56032143 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
56032170 AAATACCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
56032197 AATTACTGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
56032224 AATTACCG-GATACCCTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
56032250 AATTACC
1 AATTACC
56032257 ATTTTACCCT
Statistics
Matches: 102, Mismatches: 12, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
26 20 0.20
27 82 0.80
ACGTcount: A:0.35, C:0.21, G:0.21, T:0.24
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:56032177 original size:81 final size:80
Alignment explanation
Indices: 56032087--56032268 Score: 197
Period size: 81 Copynumber: 2.3 Consensus size: 80
56032077 CTCGATTTAC
** *
56032087 AAAATTACCGTTTTACCCTTGAT-TTACAAAATTACCGAAATACCCCTGTAGGGTAGAATTACCG
1 AAAATTACCGTTTTACCCTT-ATAGGACAAAATTACCGAAATACCCCTATAGGGTAGAATTACCG
56032151 AAATACCCTTGTAGGGT
65 -AATACCCTTGTAGGGT
*** * ** * *
56032168 AGAAA-TACCGAAATACCCCTATAGGGTAGAATTACTGAAATACCCCTATAGGGTAGAATTACCG
1 A-AAATTACCGTTTTACCCTTATAGGACAAAATTACCGAAATACCCCTATAGGGTAGAATTACCG
* *
56032232 GATACCCTTGTGGGGT
65 AATACCCTTGTAGGGT
*
56032248 AAAATTACCATTTTACCCTTA
1 AAAATTACCGTTTTACCCTTA
56032269 GGATGTTAAA
Statistics
Matches: 80, Mismatches: 18, Indels: 7
0.76 0.17 0.07
Matches are distributed among these distances:
79 3 0.04
80 28 0.35
81 46 0.57
82 3 0.04
ACGTcount: A:0.34, C:0.21, G:0.17, T:0.28
Consensus pattern (80 bp):
AAAATTACCGTTTTACCCTTATAGGACAAAATTACCGAAATACCCCTATAGGGTAGAATTACCGA
ATACCCTTGTAGGGT
Found at i:56032545 original size:27 final size:26
Alignment explanation
Indices: 56032501--56032551 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
56032491 CTAGCTGCAA
*
56032501 TCTGGTGGCCTCGCCACATATATCTAT
1 TCTGGTGACCTCGCCACA-ATATCTAT
* *
56032528 TCTGGTGACTTCGTCACAATATCT
1 TCTGGTGACCTCGCCACAATATCT
56032552 GGCAGCCTCG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 6 0.29
27 15 0.71
ACGTcount: A:0.20, C:0.27, G:0.18, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTAT
Found at i:56032620 original size:26 final size:27
Alignment explanation
Indices: 56032591--56032650 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 27
56032581 GCACATATAT
*
56032591 ATATCTGT-TCTGGTGGCCTAGCCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
* * *
56032617 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
56032644 ATATCTG
1 ATATCTG
56032651 GCAGCCTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (27 bp):
ATATCTGTATCTGGTGACCTAGCCACA
Found at i:56032798 original size:6 final size:6
Alignment explanation
Indices: 56032767--56032869 Score: 93
Period size: 6 Copynumber: 16.8 Consensus size: 6
56032757 TTGCATTCAC
* * *
56032767 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATTTTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * * *
56032816 ATTCTG ATTCTG ATTCTG -TCACTTG ATTTTG ATTCTG ATTCTC ATTTTG
1 ATTCTG ATTCTG ATTCTG AT-TC-TG ATTCTG ATTCTG ATTCTG ATTCTG
56032865 ATTCT
1 ATTCT
56032870 TGTTCTAATA
Statistics
Matches: 77, Mismatches: 14, Indels: 12
0.75 0.14 0.12
Matches are distributed among these distances:
5 3 0.04
6 67 0.87
7 5 0.06
8 2 0.03
ACGTcount: A:0.17, C:0.16, G:0.15, T:0.52
Consensus pattern (6 bp):
ATTCTG
Found at i:56032843 original size:43 final size:42
Alignment explanation
Indices: 56032767--56032869 Score: 138
Period size: 43 Copynumber: 2.4 Consensus size: 42
56032757 TTGCATTCAC
56032767 ATTCTGATTTTGATTCTGTTACCTGATACTGATTTTGATTCTG
1 ATTCTGATTTTGATTCTGTTA-CTGATACTGATTTTGATTCTG
*
56032810 ATTCTGATTCTGATTCTGATT-CTG-TCACTTGATTTTGATTCTG
1 ATTCTGATTTTGATTCTG-TTACTGAT-AC-TGATTTTGATTCTG
*
56032853 ATTCTCATTTTGATTCT
1 ATTCTGATTTTGATTCT
56032870 TGTTCTAATA
Statistics
Matches: 54, Mismatches: 3, Indels: 6
0.86 0.05 0.10
Matches are distributed among these distances:
41 1 0.02
42 5 0.09
43 46 0.85
44 2 0.04
ACGTcount: A:0.17, C:0.16, G:0.15, T:0.52
Consensus pattern (42 bp):
ATTCTGATTTTGATTCTGTTACTGATACTGATTTTGATTCTG
Found at i:56033435 original size:20 final size:20
Alignment explanation
Indices: 56033410--56033458 Score: 80
Period size: 20 Copynumber: 2.5 Consensus size: 20
56033400 AAGGGTATAA
*
56033410 GTTTTTAATTATTAAGAAGG
1 GTTTTTAATTATTAAGAACG
56033430 GTTTTTAATTATTAAGAACG
1 GTTTTTAATTATTAAGAACG
*
56033450 TTTTTTAAT
1 GTTTTTAAT
56033459 GGAAACATGG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.33, C:0.02, G:0.14, T:0.51
Consensus pattern (20 bp):
GTTTTTAATTATTAAGAACG
Found at i:56043170 original size:83 final size:83
Alignment explanation
Indices: 56043026--56043192 Score: 316
Period size: 83 Copynumber: 2.0 Consensus size: 83
56043016 TTTTAATCCA
*
56043026 TCCAGATATTACAAACCATGTTTCATAAAATCATACTTACTTTTTGTAACACCCATTGTCCAACC
1 TCCAGATATTACAAACCATGTTTCATAAAATCATACTTACTTTTTGTAACACCCATCGTCCAACC
56043091 CAATCATCAGGTCCGAGC
66 CAATCATCAGGTCCGAGC
56043109 TCCAGATATTACAAACCATGTTTCATAAAATCATACTTACTTTTTGTAACACCCATCGTCCAACC
1 TCCAGATATTACAAACCATGTTTCATAAAATCATACTTACTTTTTGTAACACCCATCGTCCAACC
*
56043174 CGATCATCAGGTCCGAGC
66 CAATCATCAGGTCCGAGC
56043192 T
1 T
56043193 ACAGGATGCT
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
83 82 1.00
ACGTcount: A:0.32, C:0.28, G:0.10, T:0.30
Consensus pattern (83 bp):
TCCAGATATTACAAACCATGTTTCATAAAATCATACTTACTTTTTGTAACACCCATCGTCCAACC
CAATCATCAGGTCCGAGC
Found at i:56045103 original size:16 final size:16
Alignment explanation
Indices: 56045079--56045109 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
56045069 CCAATCCCAA
*
56045079 GCAGTATGTCATGTAT
1 GCAGAATGTCATGTAT
56045095 GCAGAATGTCATGTA
1 GCAGAATGTCATGTA
56045110 CAAAATCAGT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.29, C:0.13, G:0.26, T:0.32
Consensus pattern (16 bp):
GCAGAATGTCATGTAT
Found at i:56045463 original size:10 final size:10
Alignment explanation
Indices: 56045448--56045472 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
56045438 GGCCCATACA
56045448 GCCCATTTCG
1 GCCCATTTCG
56045458 GCCCATTTCG
1 GCCCATTTCG
56045468 GCCCA
1 GCCCA
56045473 GAACAACCCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.12, C:0.44, G:0.20, T:0.24
Consensus pattern (10 bp):
GCCCATTTCG
Found at i:56052966 original size:46 final size:46
Alignment explanation
Indices: 56052916--56053088 Score: 192
Period size: 46 Copynumber: 3.7 Consensus size: 46
56052906 TGGTTGACCA
* *
56052916 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
56052962 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* *
56053009 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
*
56053055 -CTCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TC-CGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
56053089 GGGGCGGGTT
Statistics
Matches: 106, Mismatches: 13, Indels: 16
0.79 0.10 0.12
Matches are distributed among these distances:
43 6 0.06
45 4 0.04
46 59 0.56
47 29 0.27
48 3 0.03
50 5 0.05
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:56053073 original size:93 final size:93
Alignment explanation
Indices: 56052914--56053083 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
56052904 GATGGTTGAC
* *
56052914 CATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGTT
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCCGAACTCGTTGAGTT
56052979 GAGTCCGAGTTCGTGAGATGTAACTAGG
66 GAGTCCGAGTTCGTGAGATGTAACTAGG
* * *
56053007 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG-CTCGAGCTCGTTGAGT
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTC-CGAACTCGTTGAGT
56053071 TGAGTCCGAGTTC
65 TGAGTCCGAGTTC
56053084 ACTTAGGGGC
Statistics
Matches: 71, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
92 1 0.01
93 70 0.99
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (93 bp):
CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCCGAACTCGTTGAGTT
GAGTCCGAGTTCGTGAGATGTAACTAGG
Found at i:56053350 original size:19 final size:20
Alignment explanation
Indices: 56053313--56053350 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
56053303 ATAAGGTGGT
56053313 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
56053333 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
56053351 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:56060541 original size:46 final size:46
Alignment explanation
Indices: 56060491--56060662 Score: 208
Period size: 45 Copynumber: 3.7 Consensus size: 46
56060481 TGGTTGAGCA
*
56060491 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
56060537 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* *
56060584 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
*
56060630 -CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
56060663 GGGGCGGGTT
Statistics
Matches: 107, Mismatches: 12, Indels: 15
0.80 0.09 0.11
Matches are distributed among these distances:
43 6 0.06
45 34 0.32
46 30 0.28
47 29 0.27
48 3 0.03
50 5 0.05
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:56060924 original size:19 final size:20
Alignment explanation
Indices: 56060887--56060924 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
56060877 ATAAGGTGGT
56060887 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
56060907 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
56060925 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:56062799 original size:33 final size:33
Alignment explanation
Indices: 56062762--56062828 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
56062752 TGTTTTCGTG
56062762 TAAGACCACATCTGGGATGTTAGCATCGACTTA
1 TAAGACCACATCTGGGATGTTAGCATCGACTTA
56062795 TAAGACCACATCTGGGATGTTAGCATCGACTTA
1 TAAGACCACATCTGGGATGTTAGCATCGACTTA
56062828 T
1 T
56062829 GATTTACGTG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (33 bp):
TAAGACCACATCTGGGATGTTAGCATCGACTTA
Found at i:56062861 original size:44 final size:42
Alignment explanation
Indices: 56062795--56062887 Score: 125
Period size: 44 Copynumber: 2.2 Consensus size: 42
56062785 CATCGACTTA
* *
56062795 TAAGACCACATCTGGGATGTTAGCATCG-ACTTATGATTTACGTG
1 TAAGACCACATCTGGGACGTTAGCATCGTAC-T-TGATTT-CGTC
*
56062839 TAAGACCACGTCTGGGACGTTAGCATCGTACTTGATTTCGTC
1 TAAGACCACATCTGGGACGTTAGCATCGTACTTGATTTCGTC
56062881 TAAGACC
1 TAAGACC
56062888 CTGTCTAGGA
Statistics
Matches: 45, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
42 10 0.22
43 6 0.13
44 27 0.60
45 2 0.04
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.30
Consensus pattern (42 bp):
TAAGACCACATCTGGGACGTTAGCATCGTACTTGATTTCGTC
Found at i:56062917 original size:43 final size:42
Alignment explanation
Indices: 56062839--56062954 Score: 108
Period size: 43 Copynumber: 2.7 Consensus size: 42
56062829 GATTTACGTG
* * * * * *
56062839 TAAGACCACGTCTGGGACGTTAGCATCGTACTTGATTTCGTC
1 TAAGACCATGTCTGGAAAGTTGGCATCGTACTTGATTACATC
* * * *
56062881 TAAGACCCTGTCTAGGATAG-TGGCATCGATATTTGATTACATG
1 TAAGACCATGTCT-GGAAAGTTGGCATCG-TACTTGATTACATC
*
56062924 TAAGACCATGTCTGGAAAGTTGGCATTGTAC
1 TAAGACCATGTCTGGAAAGTTGGCATCGTAC
56062955 GAACTTTCTG
Statistics
Matches: 57, Mismatches: 14, Indels: 6
0.74 0.18 0.08
Matches are distributed among these distances:
42 25 0.44
43 32 0.56
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.31
Consensus pattern (42 bp):
TAAGACCATGTCTGGAAAGTTGGCATCGTACTTGATTACATC
Found at i:56064234 original size:17 final size:18
Alignment explanation
Indices: 56064212--56064245 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
56064202 GCGTGTGACC
56064212 TGTATAA-ATTTGAAAAA
1 TGTATAAGATTTGAAAAA
*
56064229 TGTATAAGTTTTGAAAA
1 TGTATAAGATTTGAAAA
56064246 TTTTTGTATA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.47, C:0.00, G:0.15, T:0.38
Consensus pattern (18 bp):
TGTATAAGATTTGAAAAA
Found at i:56068558 original size:9 final size:9
Alignment explanation
Indices: 56068544--56068569 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
56068534 GTACAGGCAA
56068544 ATTTTGTGT
1 ATTTTGTGT
56068553 ATTTTGTGT
1 ATTTTGTGT
56068562 ATTTTGTG
1 ATTTTGTG
56068570 AATTAGGGAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.12, C:0.00, G:0.23, T:0.65
Consensus pattern (9 bp):
ATTTTGTGT
Found at i:56095995 original size:40 final size:40
Alignment explanation
Indices: 56095904--56096125 Score: 279
Period size: 40 Copynumber: 5.6 Consensus size: 40
56095894 TATTCGGATG
* * * * * *
56095904 ATAACTGGGCTAAGTCCCGAAGGAAATTGTGCTAATGACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * *
56095944 A-ATTCCGGGCTAAGCCCCGAAGGCATTTGTGCTAGTTACT
1 ATA-ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
56095984 ATAACCAGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
56096024 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
56096064 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGTGAG-TAGCT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
* *
56096104 ATATCC-GGCTAAATCCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGG
56096126 TACTTGGTTT
Statistics
Matches: 163, Mismatches: 16, Indels: 7
0.88 0.09 0.04
Matches are distributed among these distances:
39 18 0.11
40 144 0.88
41 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.24
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:56098371 original size:39 final size:39
Alignment explanation
Indices: 56098328--56098414 Score: 129
Period size: 39 Copynumber: 2.2 Consensus size: 39
56098318 CCGGCAATTA
* * * *
56098328 GCCTGCTAGGTATAAACCTGAGCTTATCACCGGTACGAG
1 GCCTGCTAGGTATAAACCTAAACTTATCACCAGCACGAG
*
56098367 GCCTGCTAGGTATAAACCTAAATTTATCACCAGCACGAG
1 GCCTGCTAGGTATAAACCTAAACTTATCACCAGCACGAG
56098406 GCCTGCTAG
1 GCCTGCTAG
56098415 ACATTAAGTT
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 43 1.00
ACGTcount: A:0.28, C:0.26, G:0.23, T:0.23
Consensus pattern (39 bp):
GCCTGCTAGGTATAAACCTAAACTTATCACCAGCACGAG
Found at i:56107054 original size:50 final size:51
Alignment explanation
Indices: 56106972--56107090 Score: 152
Period size: 50 Copynumber: 2.4 Consensus size: 51
56106962 TTAGGTTACG
* * *
56106972 TGTGTAGTACTAAGTGCAAGCTACTACGTGTA-CCAGAT-GATTAGGTCGCA
1 TGTGTAGTACTAAGTGCAAGCTACTACATGTACCCA-ATAGATTAGATCACA
* * *
56107022 TGTGTAGTACTAAGTGCAAGCTACTATATGTACCCAATAGCTTCGATCACA
1 TGTGTAGTACTAAGTGCAAGCTACTACATGTACCCAATAGATTAGATCACA
*
56107073 TGTGTGGTACTAAGTGCA
1 TGTGTAGTACTAAGTGCA
56107091 GACCACTATG
Statistics
Matches: 60, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
50 32 0.53
51 28 0.47
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (51 bp):
TGTGTAGTACTAAGTGCAAGCTACTACATGTACCCAATAGATTAGATCACA
Done.