Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 176 of 349
Found at i:57183586 original size:27 final size:27
Alignment explanation
Indices: 57183545--57183598 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
57183535 TGTCATGTGA
* *
57183545 AATTGAATGGCAAATTATTGTTACATG
1 AATTGAATGGCAAATTACTATTACATG
**
57183572 AATTGAATGTTAAATTACTATTACATG
1 AATTGAATGGCAAATTACTATTACATG
57183599 GGTTGTACTT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.07, G:0.15, T:0.39
Consensus pattern (27 bp):
AATTGAATGGCAAATTACTATTACATG
Found at i:57183954 original size:50 final size:49
Alignment explanation
Indices: 57183824--57184052 Score: 243
Period size: 50 Copynumber: 4.6 Consensus size: 49
57183814 TCTATTGTGA
**
57183824 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAA-TT
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACG-GTACCAAATAATTT
* *
57183873 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATC-GTACCCAATAACTTT
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTA-CGGTACCAAATAA-TTT
* * ** *
57183923 GATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAAATGGTTA
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACG-GTACCAAATAATTT
* ***
57183973 GGTCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCGGCTAA-TT
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACG-GTACCAAATAATTT
57184022 GGTTGCAC--GTGTAGTACTAAGTGCAGGCTAC
1 GG-T-CACGTGTGTAGTACTAAGTGCAGGCTAC
57184053 ATGCGTACCA
Statistics
Matches: 153, Mismatches: 20, Indels: 14
0.82 0.11 0.07
Matches are distributed among these distances:
48 9 0.06
49 58 0.38
50 76 0.50
51 10 0.07
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (49 bp):
GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGGTACCAAATAATTT
Found at i:57184034 original size:99 final size:98
Alignment explanation
Indices: 57183826--57184052 Score: 271
Period size: 99 Copynumber: 2.3 Consensus size: 98
57183816 TATTGTGAGG
**
57183826 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACATGTGTAGTACT
1 TCACG-GTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATAATTGGTCACATGTGTAGTACT
*
57183891 AAGTGCAGGCTACTATCGTACCCAATAACTTTGA
65 AAGTGCAGGCTACTATCGTACCCAATAACTTGGA
* ** *
57183925 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAAATGGTTAGGTCACGTGTGTAGTAC
1 TCACG-GTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATAATT-GGTCACATGTGTAGTAC
* *** *
57183990 TAAGTGTAGGCTACTA-CGTGTACCGGCTAA-TTGGT
64 TAAGTGCAGGCTACTATC--GTACCCAATAACTTGGA
57184025 TGCAC-GTGTAGTACTAAGTGCAGGCTAC
1 T-CACGGTGTAGTACTAAGTGCAGGCTAC
57184053 ATGCGTACCA
Statistics
Matches: 112, Mismatches: 12, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
99 66 0.59
100 35 0.31
101 11 0.10
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.30
Consensus pattern (98 bp):
TCACGGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATAATTGGTCACATGTGTAGTACTA
AGTGCAGGCTACTATCGTACCCAATAACTTGGA
Found at i:57185877 original size:27 final size:27
Alignment explanation
Indices: 57185847--57185930 Score: 114
Period size: 27 Copynumber: 3.1 Consensus size: 27
57185837 AATCTCATAT
* * *
57185847 TTGTAGGCTAGCATTACTGAAATACCC
1 TTGTAGGGTAGAATTACTAAAATACCC
*
57185874 TTGTAGGGTAGAATTACTAAAATGCCC
1 TTGTAGGGTAGAATTACTAAAATACCC
* *
57185901 CTGTAGGGTAGAATTACCAAAATACCC
1 TTGTAGGGTAGAATTACTAAAATACCC
57185928 TTG
1 TTG
57185931 GTTTGTAAAA
Statistics
Matches: 49, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 49 1.00
ACGTcount: A:0.32, C:0.19, G:0.20, T:0.29
Consensus pattern (27 bp):
TTGTAGGGTAGAATTACTAAAATACCC
Found at i:57185942 original size:27 final size:27
Alignment explanation
Indices: 57185912--57186079 Score: 135
Period size: 27 Copynumber: 6.3 Consensus size: 27
57185902 TGTAGGGTAG
*
57185912 AATTACCAAAATACCCTTGGTTTGTAA
1 AATTACCAAAATACCCTTGATTTGTAA
*
57185939 AATTACCAAAATACCCCT-AGTTTGTAA
1 AATTACCAAAATACCCTTGA-TTTGTAA
* * *
57185966 AATTACGAAAATA-CCTCTAATTTGTGA
1 AATTACCAAAATACCCT-TGATTTGTAA
** ** *
57185993 AATTACTGAAATACCC-TGACCTATAA
1 AATTACCAAAATACCCTTGATTTGTAA
** * *
57186019 AATTACTGAAATACCCTCGACTTGTAA
1 AATTACCAAAATACCCTTGATTTGTAA
* * **
57186046 AATTACCAAAGTACCCTCGATTTACAA
1 AATTACCAAAATACCCTTGATTTGTAA
57186073 AATTACC
1 AATTACC
57186080 GTTTTACCCT
Statistics
Matches: 115, Mismatches: 21, Indels: 10
0.79 0.14 0.07
Matches are distributed among these distances:
26 23 0.20
27 89 0.77
28 3 0.03
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (27 bp):
AATTACCAAAATACCCTTGATTTGTAA
Found at i:57186087 original size:27 final size:27
Alignment explanation
Indices: 57186030--57186385 Score: 372
Period size: 27 Copynumber: 13.2 Consensus size: 27
57186020 ATTACTGAAA
* ** ***
57186030 TACCCTCGACTTGTAAAATTACCAAAG
1 TACCCTCGATTTACAAAATTACCATTT
*
57186057 TACCCTCGATTTACAAAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCATTT
* *
57186084 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCATTT
* *
57186111 TACTCTCGATTTACAAAATTACTATTT
1 TACCCTCGATTTACAAAATTACCATTT
* * **
57186138 TACCCTTGATTTATAAAATTACTGTTT
1 TACCCTCGATTTACAAAATTACCATTT
* *
57186165 TACCCTCGATTTATAAAATTACTATTT
1 TACCCTCGATTTACAAAATTACCATTT
* * *
57186192 TACCCTCGAATTAAAAAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCATTT
* * *
57186219 TACCATCGATTTATAGAAA-TACCGTTT
1 TACCCTCGATTTACA-AAATTACCATTT
* *
57186246 TACCCTCGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACCATTT
* * * *
57186273 TACCCTCAATTTATAAGATTACTATTT
1 TACCCTCGATTTACAAAATTACCATTT
* * *
57186300 TACCCTCAATTTACAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACCATTT
* *
57186327 TACCCTCGATTTAGAGAATTACCATTT
1 TACCCTCGATTTACAAAATTACCATTT
* *
57186354 TACCCTCGATTTATAAGATTACCATTT
1 TACCCTCGATTTACAAAATTACCATTT
57186381 TACCC
1 TACCC
57186386 CTAGGGTGTT
Statistics
Matches: 284, Mismatches: 43, Indels: 4
0.86 0.13 0.01
Matches are distributed among these distances:
26 2 0.01
27 279 0.98
28 3 0.01
ACGTcount: A:0.32, C:0.22, G:0.07, T:0.39
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACCATTT
Found at i:57186131 original size:81 final size:81
Alignment explanation
Indices: 57186030--57186385 Score: 426
Period size: 81 Copynumber: 4.4 Consensus size: 81
57186020 ATTACTGAAA
* * ***
57186030 TACCCTCGACTTGTAAAATTACCAAAGTACCCTCGATTTACAAAATTACCGTTTTACCCTCGATT
1 TACCCTCGATTTATAAAATTACCATTTTACCCTCGATTTACAAAATTACCGTTTTACCCTCGATT
*
57186095 TACAGAATTACCGTTT
66 TACAGAATTACCATTT
* * * * * *
57186111 TACTCTCGATTTACAAAATTACTATTTTACCCTTGATTTATAAAATTACTGTTTTACCCTCGATT
1 TACCCTCGATTTATAAAATTACCATTTTACCCTCGATTTACAAAATTACCGTTTTACCCTCGATT
* * *
57186176 TATAAAATTACTATTT
66 TACAGAATTACCATTT
* * * * *
57186192 TACCCTCGAATTAAAAAATTACCGTTTTACCATCGATTTATAGAAA-TACCGTTTTACCCTCGAT
1 TACCCTCGATTTATAAAATTACCATTTTACCCTCGATTTACA-AAATTACCGTTTTACCCTCGAT
*
57186256 TTACAGAATTACTATTT
65 TTACAGAATTACCATTT
* * * * * **
57186273 TACCCTCAATTTATAAGATTACTATTTTACCCTCAATTTACAGAATTACTATTTTACCCTCGATT
1 TACCCTCGATTTATAAAATTACCATTTTACCCTCGATTTACAAAATTACCGTTTTACCCTCGATT
*
57186338 TAGAGAATTACCATTT
66 TACAGAATTACCATTT
*
57186354 TACCCTCGATTTATAAGATTACCATTTTACCC
1 TACCCTCGATTTATAAAATTACCATTTTACCC
57186386 CTAGGGTGTT
Statistics
Matches: 232, Mismatches: 41, Indels: 4
0.84 0.15 0.01
Matches are distributed among these distances:
80 2 0.01
81 227 0.98
82 3 0.01
ACGTcount: A:0.32, C:0.22, G:0.07, T:0.39
Consensus pattern (81 bp):
TACCCTCGATTTATAAAATTACCATTTTACCCTCGATTTACAAAATTACCGTTTTACCCTCGATT
TACAGAATTACCATTT
Found at i:57186666 original size:27 final size:26
Alignment explanation
Indices: 57186622--57186673 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
57186612 CTCGCTGCAA
*
57186622 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
57186649 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
57186674 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:57186772 original size:27 final size:26
Alignment explanation
Indices: 57186720--57186779 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
57186710 ACATATATAT
*
57186720 ATATCTGTTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* * *
57186746 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
57186773 ATATCTG
1 ATATCTG
57186780 GCAGCCTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:57186933 original size:31 final size:31
Alignment explanation
Indices: 57186898--57186970 Score: 101
Period size: 31 Copynumber: 2.4 Consensus size: 31
57186888 TTGCATTCAC
* * * *
57186898 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTAATTCTGTCACCTAATACTG
*
57186929 ATTCTGATTCTAATTCTGTCACCTAATTCTG
1 ATTCTGATTCTAATTCTGTCACCTAATACTG
57186960 ATTCTGATTCT
1 ATTCTGATTCT
57186971 GTCAGCTGAT
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 37 1.00
ACGTcount: A:0.21, C:0.19, G:0.12, T:0.48
Consensus pattern (31 bp):
ATTCTGATTCTAATTCTGTCACCTAATACTG
Found at i:57186937 original size:6 final size:6
Alignment explanation
Indices: 57186898--57186995 Score: 67
Period size: 6 Copynumber: 15.8 Consensus size: 6
57186888 TTGCATTCAC
* * *
57186898 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTA ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * *
57186947 -TCACCTA ATTCTG ATTCTG ATTCTG -TCAGCTG ATTCTG ATTCTG ATTCT
1 AT--TCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCT
57186996 CATTTTGGTT
Statistics
Matches: 71, Mismatches: 12, Indels: 18
0.70 0.12 0.18
Matches are distributed among these distances:
5 4 0.06
6 56 0.79
7 8 0.11
8 3 0.04
ACGTcount: A:0.19, C:0.19, G:0.14, T:0.47
Consensus pattern (6 bp):
ATTCTG
Found at i:57186957 original size:25 final size:25
Alignment explanation
Indices: 57186929--57186995 Score: 107
Period size: 25 Copynumber: 2.7 Consensus size: 25
57186919 CCTGATACTG
*
57186929 ATTCTGATTCTAATTCTGTCACCTA
1 ATTCTGATTCTGATTCTGTCACCTA
* *
57186954 ATTCTGATTCTGATTCTGTCAGCTG
1 ATTCTGATTCTGATTCTGTCACCTA
57186979 ATTCTGATTCTGATTCT
1 ATTCTGATTCTGATTCT
57186996 CATTTTGGTT
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 39 1.00
ACGTcount: A:0.19, C:0.21, G:0.13, T:0.46
Consensus pattern (25 bp):
ATTCTGATTCTGATTCTGTCACCTA
Found at i:57186989 original size:31 final size:29
Alignment explanation
Indices: 57186898--57186995 Score: 96
Period size: 31 Copynumber: 3.4 Consensus size: 29
57186888 TTGCATTCAC
* *
57186898 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTGATTCTGTCA-CTGAT-CTG
* *
57186929 ATTCTGATTCTAATTCTGTCAC----CTA
1 ATTCTGATTCTGATTCTGTCACTGATCTG
57186954 ATTCTGATTCTGATTCTGTCAGCTGATTCTG
1 ATTCTGATTCTGATTCTGTCA-CTGA-TCTG
57186985 ATTCTGATTCT
1 ATTCTGATTCT
57186996 CATTTTGGTT
Statistics
Matches: 55, Mismatches: 6, Indels: 12
0.75 0.08 0.16
Matches are distributed among these distances:
25 22 0.40
26 1 0.02
30 1 0.02
31 31 0.56
ACGTcount: A:0.19, C:0.19, G:0.14, T:0.47
Consensus pattern (29 bp):
ATTCTGATTCTGATTCTGTCACTGATCTG
Found at i:57188912 original size:27 final size:27
Alignment explanation
Indices: 57188882--57188964 Score: 112
Period size: 27 Copynumber: 3.1 Consensus size: 27
57188872 ATCTCATATC
* *
57188882 TGTAGGCTAGCATTACTGAAATACCCT
1 TGTAGGGTAGAATTACTGAAATACCCT
* *
57188909 TGTAGGGTAGAATTACTGAAATGCCCC
1 TGTAGGGTAGAATTACTGAAATACCCT
**
57188936 TGTAGGGTAGAATTACCAAAATACCCT
1 TGTAGGGTAGAATTACTGAAATACCCT
57188963 TG
1 TG
57188965 GTTTGCAAAA
Statistics
Matches: 48, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 48 1.00
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28
Consensus pattern (27 bp):
TGTAGGGTAGAATTACTGAAATACCCT
Found at i:57188977 original size:54 final size:54
Alignment explanation
Indices: 57188919--57189042 Score: 135
Period size: 54 Copynumber: 2.3 Consensus size: 54
57188909 TGTAGGGTAG
* * *
57188919 AATTACTGAAATGCCCCT-GTAGGGTAGAATTACCAAAATACC-CTTGGTTTGCAA
1 AATTACTGAAATACCCCTAGT-GGGTAAAATTACCAAAATACCTC-TGATTTGCAA
** ** **
57188973 AATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCTCTGATTTGTGA
1 AATTACTGAAATACCCCTAGTGGGTAAAATTACCAAAATACCTCTGATTTGCAA
57189027 AATTACTGAAATACCC
1 AATTACTGAAATACCC
57189043 TCGACCTATA
Statistics
Matches: 57, Mismatches: 11, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
54 54 0.95
55 3 0.05
ACGTcount: A:0.37, C:0.21, G:0.13, T:0.29
Consensus pattern (54 bp):
AATTACTGAAATACCCCTAGTGGGTAAAATTACCAAAATACCTCTGATTTGCAA
Found at i:57189023 original size:27 final size:26
Alignment explanation
Indices: 57188946--57189103 Score: 120
Period size: 27 Copynumber: 5.8 Consensus size: 26
57188936 TGTAGGGTAG
* *
57188946 AATTACCAAAATACCCTTGGTTTGCAA
1 AATTACCAAAATACCC-TGATTTGTAA
57188973 AATTACCAAAATACCCCT-AGTTTGTAA
1 AATTACCAAAATA-CCCTGA-TTTGTAA
*
57189000 AATTACCAAAATACCTCTGATTTGTGA
1 AATTACCAAAATACC-CTGATTTGTAA
** ** *
57189027 AATTACTGAAATACCCTCGACCTATAA
1 AATTACCAAAATACCCT-GATTTGTAA
** * *
57189054 AATTACTGAAATACCCTCAACTTGTAA
1 AATTACCAAAATACCCT-GATTTGTAA
* *
57189081 AATTATCAAAGTACCCTCGATTT
1 AATTACCAAAATACCCT-GATTT
57189104 ACAGAATTAC
Statistics
Matches: 108, Mismatches: 18, Indels: 10
0.79 0.13 0.07
Matches are distributed among these distances:
26 4 0.04
27 100 0.93
28 4 0.04
ACGTcount: A:0.39, C:0.22, G:0.09, T:0.30
Consensus pattern (26 bp):
AATTACCAAAATACCCTGATTTGTAA
Found at i:57189111 original size:27 final size:27
Alignment explanation
Indices: 57189092--57189419 Score: 365
Period size: 27 Copynumber: 12.2 Consensus size: 27
57189082 ATTATCAAAG
57189092 TACCCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
*
57189119 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCATTT
**
57189146 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCATTT
* * * **
57189173 TACCCTTGATTTATAAAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCATTT
* *
57189200 TACCATCGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACCATTT
* * * *
57189227 TACCCTCAATTTAAAAAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCATTT
* *
57189254 TACCCTCAATTTATAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
* * * *
57189281 T-CCCTAGATTTGCAAAATTACTATTT
1 TACCCTCGATTTACAGAATTACCATTT
* * *
57189307 TACCCTC-ATTTTATAAAATTACTATTT
1 TACCCTCGA-TTTACAGAATTACCATTT
* **
57189334 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCATTT
*
57189361 TACCCTCGATTTAGAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
*
57189388 TACCCTCGATTTATA-AGATTACCATTT
1 TACCCTCGATTTACAGA-ATTACCATTT
57189415 TACCC
1 TACCC
57189420 CTAGGGTGTT
Statistics
Matches: 263, Mismatches: 34, Indels: 8
0.86 0.11 0.03
Matches are distributed among these distances:
26 22 0.08
27 240 0.91
28 1 0.00
ACGTcount: A:0.30, C:0.22, G:0.07, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCATTT
Found at i:57189139 original size:81 final size:81
Alignment explanation
Indices: 57189092--57189419 Score: 406
Period size: 81 Copynumber: 4.1 Consensus size: 81
57189082 ATTATCAAAG
* ** *
57189092 TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATT
1 TACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACTATTTTACCCTCAATT
* * *
57189157 TACAGAATTACTGTTT
66 TATAAAATTACTATTT
* * ** *
57189173 TACCCTTGATTTATAAAATTACTGTTTTACCATCGATTTACAGAATTACTATTTTACCCTCAATT
1 TACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACTATTTTACCCTCAATT
* **
57189238 TAAAAAATTACCGTTT
66 TATAAAATTACTATTT
* * * * *
57189254 TACCCTCAATTTATAGAATTACCATTTT-CCCTAGATTTGCAAAATTACTATTTTACCCTCATTT
1 TACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACTATTTTACCCTCAATT
57189318 TATAAAATTACTATTT
66 TATAAAATTACTATTT
** * * *
57189334 TACCCTCGATTTATAGAATTACTGTTTTACCCTCGATTTAGAGAATTACCATTTTACCCTCGATT
1 TACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACTATTTTACCCTCAATT
* *
57189399 TATAAGATTACCATTT
66 TATAAAATTACTATTT
57189415 TACCC
1 TACCC
57189420 CTAGGGTGTT
Statistics
Matches: 209, Mismatches: 37, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
80 69 0.33
81 140 0.67
ACGTcount: A:0.30, C:0.22, G:0.07, T:0.41
Consensus pattern (81 bp):
TACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACTATTTTACCCTCAATT
TATAAAATTACTATTT
Found at i:57189700 original size:27 final size:26
Alignment explanation
Indices: 57189656--57189707 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
57189646 CTCGCTGCAA
*
57189656 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
57189683 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
57189708 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:57189798 original size:27 final size:26
Alignment explanation
Indices: 57189746--57189804 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 26
57189736 CCACATATAT
*
57189746 ATATCTGTTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* * *
57189772 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
57189799 ATATCT
1 ATATCT
57189805 AGCAGCCTCG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.29
27 20 0.71
ACGTcount: A:0.22, C:0.24, G:0.19, T:0.36
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:57192332 original size:17 final size:17
Alignment explanation
Indices: 57192312--57192348 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
57192302 GATTGAGAGT
* *
57192312 GAAAAGGAATTGAAACA
1 GAAAAGAAATTGAAAAA
57192329 GAAAAGAAATTGAAAAA
1 GAAAAGAAATTGAAAAA
57192346 GAA
1 GAA
57192349 GTTGAAGAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.65, C:0.03, G:0.22, T:0.11
Consensus pattern (17 bp):
GAAAAGAAATTGAAAAA
Found at i:57192361 original size:13 final size:12
Alignment explanation
Indices: 57192330--57192384 Score: 51
Period size: 12 Copynumber: 4.6 Consensus size: 12
57192320 ATTGAAACAG
*
57192330 AAAAGAAATTGA
1 AAAAGAAGTTGA
57192342 AAAAGAAGTTGA
1 AAAAGAAGTTGA
*
57192354 AGAAAGAAG-AGA
1 A-AAAGAAGTTGA
*
57192366 AAATG-AGTTAGA
1 AAAAGAAGTT-GA
57192378 AAAAGAA
1 AAAAGAA
57192385 ACAAAAGAAA
Statistics
Matches: 34, Mismatches: 5, Indels: 7
0.74 0.11 0.15
Matches are distributed among these distances:
10 2 0.06
11 3 0.09
12 21 0.62
13 8 0.24
ACGTcount: A:0.64, C:0.00, G:0.24, T:0.13
Consensus pattern (12 bp):
AAAAGAAGTTGA
Found at i:57194701 original size:31 final size:31
Alignment explanation
Indices: 57194666--57194738 Score: 101
Period size: 31 Copynumber: 2.4 Consensus size: 31
57194656 TTGCATTCAC
* * * *
57194666 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTAATTCTGTCACCTAATACTG
*
57194697 ATTCTGATTCTAATTCTGTCACCTAATTCTG
1 ATTCTGATTCTAATTCTGTCACCTAATACTG
57194728 ATTCTGATTCT
1 ATTCTGATTCT
57194739 GTCAGCTGAT
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 37 1.00
ACGTcount: A:0.21, C:0.19, G:0.12, T:0.48
Consensus pattern (31 bp):
ATTCTGATTCTAATTCTGTCACCTAATACTG
Found at i:57194705 original size:6 final size:6
Alignment explanation
Indices: 57194666--57194763 Score: 67
Period size: 6 Copynumber: 15.8 Consensus size: 6
57194656 TTGCATTCAC
* * *
57194666 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTA ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * *
57194715 -TCACCTA ATTCTG ATTCTG ATTCTG -TCAGCTG ATTCTG ATTCTG ATTCT
1 AT--TCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCT
57194764 CATTTTGGTT
Statistics
Matches: 71, Mismatches: 12, Indels: 18
0.70 0.12 0.18
Matches are distributed among these distances:
5 4 0.06
6 56 0.79
7 8 0.11
8 3 0.04
ACGTcount: A:0.19, C:0.19, G:0.14, T:0.47
Consensus pattern (6 bp):
ATTCTG
Found at i:57194725 original size:25 final size:25
Alignment explanation
Indices: 57194697--57194763 Score: 107
Period size: 25 Copynumber: 2.7 Consensus size: 25
57194687 CCTGATACTG
*
57194697 ATTCTGATTCTAATTCTGTCACCTA
1 ATTCTGATTCTGATTCTGTCACCTA
* *
57194722 ATTCTGATTCTGATTCTGTCAGCTG
1 ATTCTGATTCTGATTCTGTCACCTA
57194747 ATTCTGATTCTGATTCT
1 ATTCTGATTCTGATTCT
57194764 CATTTTGGTT
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 39 1.00
ACGTcount: A:0.19, C:0.21, G:0.13, T:0.46
Consensus pattern (25 bp):
ATTCTGATTCTGATTCTGTCACCTA
Found at i:57194757 original size:31 final size:29
Alignment explanation
Indices: 57194666--57194763 Score: 96
Period size: 31 Copynumber: 3.4 Consensus size: 29
57194656 TTGCATTCAC
* *
57194666 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTGATTCTGTCA-CTGAT-CTG
* *
57194697 ATTCTGATTCTAATTCTGTCAC----CTA
1 ATTCTGATTCTGATTCTGTCACTGATCTG
57194722 ATTCTGATTCTGATTCTGTCAGCTGATTCTG
1 ATTCTGATTCTGATTCTGTCA-CTGA-TCTG
57194753 ATTCTGATTCT
1 ATTCTGATTCT
57194764 CATTTTGGTT
Statistics
Matches: 55, Mismatches: 6, Indels: 12
0.75 0.08 0.16
Matches are distributed among these distances:
25 22 0.40
26 1 0.02
30 1 0.02
31 31 0.56
ACGTcount: A:0.19, C:0.19, G:0.14, T:0.47
Consensus pattern (29 bp):
ATTCTGATTCTGATTCTGTCACTGATCTG
Found at i:57196673 original size:27 final size:27
Alignment explanation
Indices: 57196643--57196714 Score: 101
Period size: 27 Copynumber: 2.7 Consensus size: 27
57196633 GTAAGCTAGC
57196643 ATTACAGAAATACCCTTGTAGGGTAGA
1 ATTACAGAAATACCCTTGTAGGGTAGA
* * *
57196670 ATTACTGAAATGCCCCTGTAGGGTAGA
1 ATTACAGAAATACCCTTGTAGGGTAGA
57196697 ATTACCA-AAATACCCTTG
1 ATTA-CAGAAATACCCTTG
57196715 GTTAGTAAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
27 37 0.97
28 1 0.03
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.26
Consensus pattern (27 bp):
ATTACAGAAATACCCTTGTAGGGTAGA
Found at i:57196726 original size:27 final size:27
Alignment explanation
Indices: 57196696--57196792 Score: 113
Period size: 27 Copynumber: 3.6 Consensus size: 27
57196686 TGTAGGGTAG
* *
57196696 AATTACCAAAATACCCTTGGTTAGTAA
1 AATTACCAAAATACCCCTAGTTAGTAA
*
57196723 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTAGTAA
* * * *
57196750 AATTACCAAAATACCTCTAATTTGTGA
1 AATTACCAAAATACCCCTAGTTAGTAA
**
57196777 AATTACTGAAATACCC
1 AATTACCAAAATACCC
57196793 TCGACCTATA
Statistics
Matches: 61, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 61 1.00
ACGTcount: A:0.41, C:0.21, G:0.08, T:0.30
Consensus pattern (27 bp):
AATTACCAAAATACCCCTAGTTAGTAA
Found at i:57196781 original size:81 final size:81
Alignment explanation
Indices: 57196696--57196845 Score: 178
Period size: 81 Copynumber: 1.9 Consensus size: 81
57196686 TGTAGGGTAG
* ** * * *
57196696 AATTACCAAAATACCCTTG-GTTAGTAAAATTACCAAAATACCC-CTAGTTTGTAAAATTACCAA
1 AATTACCAAAATACCCTCGACCTA-TAAAATCACCAAAATACCCTCGACTTT-TAAAATTACCAA
57196759 AATACCTCTAATTTGTGA
64 AATACCTCTAATTTGTGA
** * *
57196777 AATTACTGAAATACCCTCGACCTATAAAATCACTAAAATACCCTCGACTTTTAAAATTACCAAAG
1 AATTACCAAAATACCCTCGACCTATAAAATCACCAAAATACCCTCGACTTTTAAAATTACCAAAA
57196842 TACC
66 TACC
57196846 CTCGATTTAC
Statistics
Matches: 57, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
81 50 0.88
82 7 0.12
ACGTcount: A:0.41, C:0.23, G:0.07, T:0.29
Consensus pattern (81 bp):
AATTACCAAAATACCCTCGACCTATAAAATCACCAAAATACCCTCGACTTTTAAAATTACCAAAA
TACCTCTAATTTGTGA
Found at i:57196806 original size:27 final size:27
Alignment explanation
Indices: 57196776--57196850 Score: 96
Period size: 27 Copynumber: 2.8 Consensus size: 27
57196766 CTAATTTGTG
*
57196776 AAATTACTGAAATACCCTCGACCTATA
1 AAATTACTAAAATACCCTCGACCTATA
* * *
57196803 AAATCACTAAAATACCCTCGACTTTTA
1 AAATTACTAAAATACCCTCGACCTATA
* *
57196830 AAATTACCAAAGTACCCTCGA
1 AAATTACTAAAATACCCTCGA
57196851 TTTACAGAAT
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 41 1.00
ACGTcount: A:0.41, C:0.27, G:0.07, T:0.25
Consensus pattern (27 bp):
AAATTACTAAAATACCCTCGACCTATA
Found at i:57196861 original size:27 final size:27
Alignment explanation
Indices: 57196842--57197170 Score: 403
Period size: 27 Copynumber: 12.2 Consensus size: 27
57196832 ATTACCAAAG
*
57196842 TACCCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACTATTT
* *
57196869 TACCCTCGATTTACAAAATTACAATTT
1 TACCCTCGATTTACAGAATTACTATTT
* * *
57196896 TACCCTCTATTTACAAAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTATTT
* *
57196923 TACCCTCGATTTATAAAATTACTATTT
1 TACCCTCGATTTACAGAATTACTATTT
57196950 TACCCTCGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACTATTT
* * * *
57196977 TACGCTCGATTTAAAAAATTA-TCGTTT
1 TACCCTCGATTTACAGAATTACT-ATTT
* * *
57197004 TACCCTCGATTTATAGAATCACCATTT
1 TACCCTCGATTTACAGAATTACTATTT
*
57197031 TACCATCGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACTATTT
* *
57197058 TACCCTCAATTTATA-AAGTTACTATTT
1 TACCCTCGATTTACAGAA-TTACTATTT
*
57197085 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTATTT
*
57197112 TACCCTCGATTTACAGAATTA-TCGTTT
1 TACCCTCGATTTACAGAATTACT-ATTT
* * *
57197139 TACCCTCGATTTATAAAATTACCATTT
1 TACCCTCGATTTACAGAATTACTATTT
57197166 TACCC
1 TACCC
57197171 CTAGAGTGTT
Statistics
Matches: 262, Mismatches: 34, Indels: 12
0.85 0.11 0.04
Matches are distributed among these distances:
26 4 0.02
27 256 0.98
28 2 0.01
ACGTcount: A:0.31, C:0.22, G:0.07, T:0.40
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACTATTT
Found at i:57196887 original size:81 final size:81
Alignment explanation
Indices: 57196788--57197170 Score: 405
Period size: 81 Copynumber: 4.7 Consensus size: 81
57196778 ATTACTGAAA
** * * ** ***
57196788 TACCCTCGACCTATAAAATCACTAAAATACCCTCGACTTT-TAAAATTACCAAAGTACCCTCGAT
1 TACCCTCGATTTACAAAATTACTAATTTACCCTCGA-TTTATAAAATTACCATTTTACCCTCGAT
57196852 TTACAGAATTACCATTT
65 TTACAGAATTACCATTT
* * **
57196869 TACCCTCGATTTACAAAATTAC-AATTTTACCCTCTATTTACAAAATTACTGTTTTACCCTCGAT
1 TACCCTCGATTTACAAAATTACTAA-TTTACCCTCGATTTATAAAATTACCATTTTACCCTCGAT
* * *
57196933 TTATAAAATTACTATTT
65 TTACAGAATTACCATTT
* * * * * *
57196950 TACCCTCGATTTACAGAATTACTATTTTACGCTCGATTTAAAAAATTATCGTTTTACCCTCGATT
1 TACCCTCGATTTACAAAATTACTAATTTACCCTCGATTTATAAAATTACCATTTTACCCTCGATT
* *
57197015 TATAGAATCACCATTT
66 TACAGAATTACCATTT
* * * * * *
57197031 TACCATCGATTTACAGAATTACTATTTTACCCTCAATTTATAAAGTTACTATTTTACCCTCGATT
1 TACCCTCGATTTACAAAATTACTAATTTACCCTCGATTTATAAAATTACCATTTTACCCTCGATT
**
57197096 TACAGAATTACTGTTT
66 TACAGAATTACCATTT
*
57197112 TACCCTCGATTTACAGAATTATCGT--TTTACCCTCGATTTATAAAATTACCATTTTACCC
1 TACCCTCGATTTACAAAATTA-C-TAATTTACCCTCGATTTATAAAATTACCATTTTACCC
57197171 CTAGAGTGTT
Statistics
Matches: 255, Mismatches: 42, Indels: 10
0.83 0.14 0.03
Matches are distributed among these distances:
80 5 0.02
81 247 0.97
82 2 0.01
83 1 0.00
ACGTcount: A:0.32, C:0.23, G:0.07, T:0.38
Consensus pattern (81 bp):
TACCCTCGATTTACAAAATTACTAATTTACCCTCGATTTATAAAATTACCATTTTACCCTCGATT
TACAGAATTACCATTT
Found at i:57197714 original size:6 final size:6
Alignment explanation
Indices: 57197675--57197772 Score: 67
Period size: 6 Copynumber: 15.8 Consensus size: 6
57197665 TTGCATTCAT
* * *
57197675 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTA ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * *
57197724 -TCACCTA ATTCTG ATTCTG ATTCTG -TCACCTG ATTCTG ATTCTG ATTCT
1 AT--TCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCT
57197773 CATTTTGGTT
Statistics
Matches: 71, Mismatches: 12, Indels: 18
0.70 0.12 0.18
Matches are distributed among these distances:
5 4 0.06
6 56 0.79
7 8 0.11
8 3 0.04
ACGTcount: A:0.19, C:0.20, G:0.13, T:0.47
Consensus pattern (6 bp):
ATTCTG
Found at i:57197734 original size:25 final size:25
Alignment explanation
Indices: 57197706--57197772 Score: 116
Period size: 25 Copynumber: 2.7 Consensus size: 25
57197696 CCTGATACTG
*
57197706 ATTCTGATTCTAATTCTGTCACCTA
1 ATTCTGATTCTGATTCTGTCACCTA
*
57197731 ATTCTGATTCTGATTCTGTCACCTG
1 ATTCTGATTCTGATTCTGTCACCTA
57197756 ATTCTGATTCTGATTCT
1 ATTCTGATTCTGATTCT
57197773 CATTTTGGTT
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
25 40 1.00
ACGTcount: A:0.19, C:0.22, G:0.12, T:0.46
Consensus pattern (25 bp):
ATTCTGATTCTGATTCTGTCACCTA
Found at i:57197766 original size:31 final size:30
Alignment explanation
Indices: 57197675--57197772 Score: 116
Period size: 31 Copynumber: 3.4 Consensus size: 30
57197665 TTGCATTCAT
* *
57197675 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTGATTCTGTCACCTGAT-CTG
*
57197706 ATTCTGATTCTAATTCTGTCACCT-A----
1 ATTCTGATTCTGATTCTGTCACCTGATCTG
57197731 ATTCTGATTCTGATTCTGTCACCTGATTCTG
1 ATTCTGATTCTGATTCTGTCACCTGA-TCTG
57197762 ATTCTGATTCT
1 ATTCTGATTCT
57197773 CATTTTGGTT
Statistics
Matches: 57, Mismatches: 4, Indels: 12
0.78 0.05 0.16
Matches are distributed among these distances:
25 23 0.40
26 1 0.02
30 1 0.02
31 32 0.56
ACGTcount: A:0.19, C:0.20, G:0.13, T:0.47
Consensus pattern (30 bp):
ATTCTGATTCTGATTCTGTCACCTGATCTG
Found at i:57199701 original size:27 final size:27
Alignment explanation
Indices: 57199643--57199713 Score: 97
Period size: 27 Copynumber: 2.6 Consensus size: 27
57199633 AATCTCATAT
* *
57199643 CTGTAGGCTAGCATTACTGAAATAACC
1 CTGTAGGGTAGAATTACTGAAATAACC
* **
57199670 TTGTAGGGTAGAATTACTGAAATGCCC
1 CTGTAGGGTAGAATTACTGAAATAACC
57199697 CTGTAGGGTAGAATTAC
1 CTGTAGGGTAGAATTAC
57199714 CAAAATACCC
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 38 1.00
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.28
Consensus pattern (27 bp):
CTGTAGGGTAGAATTACTGAAATAACC
Found at i:57199738 original size:27 final size:27
Alignment explanation
Indices: 57199708--57199805 Score: 135
Period size: 27 Copynumber: 3.6 Consensus size: 27
57199698 TGTAGGGTAG
57199708 AATTACCAAAATACCCTTGGTTTGTAA
1 AATTACCAAAATACCCTTGGTTTGTAA
* *
57199735 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCTTGGTTTGTAA
* *
57199762 AATTACCAAAATA-CCTCTGATTTGTGA
1 AATTACCAAAATACCCT-TGGTTTGTAA
*
57199789 AATTACTAAAATACCCT
1 AATTACCAAAATACCCT
57199806 CGACCTATAA
Statistics
Matches: 62, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
26 2 0.03
27 57 0.92
28 3 0.05
ACGTcount: A:0.40, C:0.20, G:0.08, T:0.32
Consensus pattern (27 bp):
AATTACCAAAATACCCTTGGTTTGTAA
Found at i:57199739 original size:54 final size:54
Alignment explanation
Indices: 57199681--57199804 Score: 144
Period size: 54 Copynumber: 2.3 Consensus size: 54
57199671 TGTAGGGTAG
* * * *
57199681 AATTACTGAAATGCCCCT-GTAGGGTAGAATTACCAAAATACC-CTTGGTTTGTAA
1 AATTACTAAAATACCCCTAGT-GGGTAAAATTACCAAAATACCTC-TGATTTGTAA
* ** *
57199735 AATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCTCTGATTTGTGA
1 AATTACTAAAATACCCCTAGTGGGTAAAATTACCAAAATACCTCTGATTTGTAA
57199789 AATTACTAAAATACCC
1 AATTACTAAAATACCC
57199805 TCGACCTATA
Statistics
Matches: 59, Mismatches: 9, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
54 56 0.95
55 3 0.05
ACGTcount: A:0.38, C:0.20, G:0.12, T:0.30
Consensus pattern (54 bp):
AATTACTAAAATACCCCTAGTGGGTAAAATTACCAAAATACCTCTGATTTGTAA
Found at i:57199817 original size:54 final size:54
Alignment explanation
Indices: 57199708--57199876 Score: 175
Period size: 54 Copynumber: 3.1 Consensus size: 54
57199698 TGTAGGGTAG
* * *
57199708 AATTACCAAAATACC-CTTGGTTTGTAAAATTACCAAAATACCC-CTAGTTTGTAA
1 AATTACCAAAATACCTC-TGATTTGTAAAATTACCAAAATACCCTCGA-TTTATAA
* * **
57199762 AATTACCAAAATACCTCTGATTTGTGAAATTACTAAAATACCCTCGACCTATAA
1 AATTACCAAAATACCTCTGATTTGTAAAATTACCAAAATACCCTCGATTTATAA
** * *
57199816 AATTACTGAAATATCCTC-GACTTT-TAAAATTACCAAAGTACCCTCGATTTATAG
1 AATTACCAAAATA-CCTCTGA-TTTGTAAAATTACCAAAATACCCTCGATTTATAA
57199870 AATTACC
1 AATTACC
57199877 GTTTTACCCT
Statistics
Matches: 95, Mismatches: 16, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
54 85 0.89
55 10 0.11
ACGTcount: A:0.39, C:0.21, G:0.08, T:0.31
Consensus pattern (54 bp):
AATTACCAAAATACCTCTGATTTGTAAAATTACCAAAATACCCTCGATTTATAA
Found at i:57199818 original size:27 final size:27
Alignment explanation
Indices: 57199788--57199862 Score: 96
Period size: 27 Copynumber: 2.8 Consensus size: 27
57199778 CTGATTTGTG
57199788 AAATTACTAAAATACCCTCGACCTATA
1 AAATTACTAAAATACCCTCGACCTATA
* * * *
57199815 AAATTACTGAAATATCCTCGACTTTTA
1 AAATTACTAAAATACCCTCGACCTATA
* *
57199842 AAATTACCAAAGTACCCTCGA
1 AAATTACTAAAATACCCTCGA
57199863 TTTATAGAAT
Statistics
Matches: 40, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 40 1.00
ACGTcount: A:0.41, C:0.24, G:0.07, T:0.28
Consensus pattern (27 bp):
AAATTACTAAAATACCCTCGACCTATA
Found at i:57199873 original size:27 final size:27
Alignment explanation
Indices: 57199830--57200155 Score: 334
Period size: 27 Copynumber: 12.1 Consensus size: 27
57199820 ACTGAAATAT
***
57199830 CCTCGACTTT-TAAAATTACCAAAGTAC
1 CCTCGA-TTTATAAAATTACCATTTTAC
* *
57199857 CCTCGATTTATAGAATTACCGTTTTAC
1 CCTCGATTTATAAAATTACCATTTTAC
* * **
57199884 CCTCGATTTACAGAATTACTGTTTTAC
1 CCTCGATTTATAAAATTACCATTTTAC
* **
57199911 CCTTGATTTATAAAATTACTGTTTTAC
1 CCTCGATTTATAAAATTACCATTTTAC
** * * *
57199938 CCTTAATTTACAGAATTACTATTTTAC
1 CCTCGATTTATAAAATTACCATTTTAC
*
57199965 CCTCGATTT-TAAAAATTACTATTTTAC
1 CCTCGATTTAT-AAAATTACCATTTTAC
* * * *
57199992 CGTCAATTTAT-AAATTGCCAATTTAC
1 CCTCGATTTATAAAATTACCATTTTAC
** *
57200018 CCTCGATTTATAGTATTACTATTTTAC
1 CCTCGATTTATAAAATTACCATTTTAC
* *
57200045 CATCGATTTATAAAATTACTATTTTAC
1 CCTCGATTTATAAAATTACCATTTTAC
* * *
57200072 CCTCAATTTATAGAATTACTATTTTAC
1 CCTCGATTTATAAAATTACCATTTTAC
*
57200099 CCTCGATTTACAAAATTACCATTTTAC
1 CCTCGATTTATAAAATTACCATTTTAC
57200126 CCTCGATTTATAAAATTACCATTTTAC
1 CCTCGATTTATAAAATTACCATTTTAC
57200153 CCT
1 CCT
57200156 TAGGGTGTTA
Statistics
Matches: 254, Mismatches: 41, Indels: 8
0.84 0.14 0.03
Matches are distributed among these distances:
26 24 0.09
27 229 0.90
28 1 0.00
ACGTcount: A:0.32, C:0.21, G:0.06, T:0.42
Consensus pattern (27 bp):
CCTCGATTTATAAAATTACCATTTTAC
Found at i:57199925 original size:81 final size:81
Alignment explanation
Indices: 57199840--57200155 Score: 375
Period size: 81 Copynumber: 3.9 Consensus size: 81
57199830 CCTCGACTTT
** * * * * *
57199840 TAAAATTACCAAAGTACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAGAATTACTG
1 TAAAATTACCAATTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTATAAAATTACTA
**
57199905 TTTTACCCTTGATTTA
66 TTTTACCCTCAATTTA
*** ** *
57199921 TAAAATTACTGTTTTACCCTTAATTTACAGAATTACTATTTTACCCTCGATTT-TAAAAATTACT
1 TAAAATTACCAATTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTAT-AAAATTACT
*
57199985 ATTTTACCGTCAATTTA
65 ATTTTACCCTCAATTTA
* * * * *
57200002 T-AAATTGCCAATTTACCCTCGATTTATAGTATTACTATTTTACCATCGATTTATAAAATTACTA
1 TAAAATTACCAATTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTATAAAATTACTA
57200066 TTTTACCCTCAATTTA
66 TTTTACCCTCAATTTA
* * * * *
57200082 TAGAATTACTATTTTACCCTCGATTTACAAAATTACCATTTTACCCTCGATTTATAAAATTACCA
1 TAAAATTACCAATTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTATAAAATTACTA
57200147 TTTTACCCT
66 TTTTACCCT
57200156 TAGGGTGTTA
Statistics
Matches: 196, Mismatches: 36, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
80 68 0.35
81 128 0.65
ACGTcount: A:0.32, C:0.20, G:0.06, T:0.42
Consensus pattern (81 bp):
TAAAATTACCAATTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTATAAAATTACTA
TTTTACCCTCAATTTA
Found at i:57200054 original size:134 final size:135
Alignment explanation
Indices: 57199854--57200155 Score: 428
Period size: 134 Copynumber: 2.2 Consensus size: 135
57199844 ATTACCAAAG
* * ** * * *
57199854 TACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTTTACCCTTGATT
1 TACCCTCAATTTATAAAATTACCAATTTACCCTCGATTTACAGAATTACTATTTTACCATCGATT
* *
57199919 TATAAAATTACTGTTTTACCCTTAATTTACAGAATTACTATTTTACCCTCGATTTTA-AAAATTA
66 TATAAAATTACTATTTTACCCTCAATTTACAGAATTACTATTTTACCCTCGA-TTTACAAAATTA
*
57199983 CTATTT
130 CCATTT
* * * *
57199989 TACCGTCAATTTAT-AAATTGCCAATTTACCCTCGATTTATAGTATTACTATTTTACCATCGATT
1 TACCCTCAATTTATAAAATTACCAATTTACCCTCGATTTACAGAATTACTATTTTACCATCGATT
*
57200053 TATAAAATTACTATTTTACCCTCAATTTATAGAATTACTATTTTACCCTCGATTTACAAAATTAC
66 TATAAAATTACTATTTTACCCTCAATTTACAGAATTACTATTTTACCCTCGATTTACAAAATTAC
57200118 CATTT
131 CATTT
* *
57200123 TACCCTCGATTTATAAAATTACCATTTTACCCT
1 TACCCTCAATTTATAAAATTACCAATTTACCCT
57200156 TAGGGTGTTA
Statistics
Matches: 146, Mismatches: 19, Indels: 4
0.86 0.11 0.02
Matches are distributed among these distances:
133 4 0.03
134 114 0.78
135 28 0.19
ACGTcount: A:0.31, C:0.20, G:0.06, T:0.43
Consensus pattern (135 bp):
TACCCTCAATTTATAAAATTACCAATTTACCCTCGATTTACAGAATTACTATTTTACCATCGATT
TATAAAATTACTATTTTACCCTCAATTTACAGAATTACTATTTTACCCTCGATTTACAAAATTAC
CATTT
Found at i:57200723 original size:25 final size:25
Alignment explanation
Indices: 57200695--57200758 Score: 101
Period size: 25 Copynumber: 2.6 Consensus size: 25
57200685 GATACTGATC
57200695 CTGATTCTAATTTTGTCACCTAATT
1 CTGATTCTAATTTTGTCACCTAATT
* *
57200720 CTGATTCTAATTCTGTCACCTGATT
1 CTGATTCTAATTTTGTCACCTAATT
*
57200745 CTGATTCTGATTTT
1 CTGATTCTAATTTT
57200759 CATTTTGGTT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 35 1.00
ACGTcount: A:0.20, C:0.20, G:0.11, T:0.48
Consensus pattern (25 bp):
CTGATTCTAATTTTGTCACCTAATT
Found at i:57200752 original size:31 final size:31
Alignment explanation
Indices: 57200655--57200756 Score: 99
Period size: 31 Copynumber: 3.5 Consensus size: 31
57200645 TTGGGATTGC
* * * *
57200655 ATTCAGATTCTGATTTTGATTCTGTTACCTG
1 ATTCTGATTCTGATTCTAATTCTGTCACCTG
* * *
57200686 ATACTGATCCTGATTCTAATTTTGTCACCT-
1 ATTCTGATTCTGATTCTAATTCTGTCACCTG
57200716 A-----ATTCTGATTCTAATTCTGTCACCTG
1 ATTCTGATTCTGATTCTAATTCTGTCACCTG
57200742 ATTCTGATTCTGATT
1 ATTCTGATTCTGATT
57200757 TTCATTTTGG
Statistics
Matches: 56, Mismatches: 9, Indels: 12
0.73 0.12 0.16
Matches are distributed among these distances:
25 22 0.39
26 1 0.02
30 1 0.02
31 32 0.57
ACGTcount: A:0.22, C:0.20, G:0.13, T:0.46
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTAATTCTGTCACCTG
Found at i:57201805 original size:25 final size:25
Alignment explanation
Indices: 57201777--57201827 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
57201767 TATATACAAT
57201777 ATGGTAAGCAAATATGTTTAAAGTG
1 ATGGTAAGCAAATATGTTTAAAGTG
57201802 ATGGTAAGCAAATATGTTTAAAGTG
1 ATGGTAAGCAAATATGTTTAAAGTG
57201827 A
1 A
57201828 ATGACATGTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.41, C:0.04, G:0.24, T:0.31
Consensus pattern (25 bp):
ATGGTAAGCAAATATGTTTAAAGTG
Found at i:57204016 original size:27 final size:27
Alignment explanation
Indices: 57203986--57204195 Score: 201
Period size: 27 Copynumber: 7.8 Consensus size: 27
57203976 GTTTACCAAG
*
57203986 TTACCAAAATACCCTTGATTTATAAAA
1 TTACCAAAATACCCTTGATTTGTAAAA
*
57204013 TTACCAAAATACCCCT-AGTTTGTAAAA
1 TTACCAAAATACCCTTGA-TTTGTAAAA
* *
57204040 TTACCAAAATACCCCTGGTTTGTAAAA
1 TTACCAAAATACCCTTGATTTGTAAAA
* *
57204067 TTATCAAAATACCCCT-AGTTTGTAAAA
1 TTACCAAAATACCCTTGA-TTTGTAAAA
*
57204094 TTACCAAAATA-CCTCTGATTTGTGAAA
1 TTACCAAAATACCCT-TGATTTGTAAAA
** ** **
57204121 TTACTGAAATACCCTCAACCTGTAAAA
1 TTACCAAAATACCCTTGATTTGTAAAA
*** * *
57204148 TTATTGAAATACCCTCGACTTGTAAAA
1 TTACCAAAATACCCTTGATTTGTAAAA
*
57204175 TTACCAAAGTACCCTTGATTT
1 TTACCAAAATACCCTTGATTT
57204196 ACAGAATTAC
Statistics
Matches: 153, Mismatches: 24, Indels: 12
0.81 0.13 0.06
Matches are distributed among these distances:
26 3 0.02
27 146 0.95
28 4 0.03
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.32
Consensus pattern (27 bp):
TTACCAAAATACCCTTGATTTGTAAAA
Found at i:57204048 original size:54 final size:54
Alignment explanation
Indices: 57203986--57204188 Score: 230
Period size: 54 Copynumber: 3.8 Consensus size: 54
57203976 GTTTACCAAG
*
57203986 TTACCAAAATACCCTTGATTTATAAAATTACCAAAATACCCCTAGTTTGTAAAA
1 TTACCAAAATACCCTTGATTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAA
* * *
57204040 TTACCAAAATACCCCTGGTTTGTAAAATTATCAAAATACCCCTAGTTTGTAAAA
1 TTACCAAAATACCCTTGATTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAA
* ** ***
57204094 TTACCAAAATA-CCTCTGATTTGTGAAATTACTGAAATA-CCCTCAACCTGTAAAA
1 TTACCAAAATACCCT-TGATTTGTAAAATTACCAAAATACCCCT-AGTTTGTAAAA
*** * * *
57204148 TTATTGAAATACCCTCGACTTGTAAAATTACCAAAGTACCC
1 TTACCAAAATACCCTTGATTTGTAAAATTACCAAAATACCC
57204189 TTGATTTACA
Statistics
Matches: 123, Mismatches: 22, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
53 6 0.05
54 112 0.91
55 5 0.04
ACGTcount: A:0.39, C:0.22, G:0.08, T:0.31
Consensus pattern (54 bp):
TTACCAAAATACCCTTGATTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAA
Found at i:57204241 original size:27 final size:27
Alignment explanation
Indices: 57203986--57204242 Score: 137
Period size: 27 Copynumber: 9.5 Consensus size: 27
57203976 GTTTACCAAG
* * **
57203986 TTACCAAAATACCCTTGATTTATAAAA
1 TTACCGAAATACCCTCGATTTGCAAAA
* * *
57204013 TTACCAAAATACCC-CTAGTTTGTAAAA
1 TTACCGAAATACCCTCGA-TTTGCAAAA
* * *
57204040 TTACCAAAATACCC-CTGGTTTGTAAAA
1 TTACCGAAATACCCTC-GATTTGCAAAA
* * * *
57204067 TTATCAAAATACCC-CTAGTTTGTAAAA
1 TTACCGAAATACCCTCGA-TTTGCAAAA
* **
57204094 TTACCAAAATA-CCTCTGATTTGTGAAA
1 TTACCGAAATACCCTC-GATTTGCAAAA
* * ** *
57204121 TTACTGAAATACCCTCAACCTGTAAAA
1 TTACCGAAATACCCTCGATTTGCAAAA
** * *
57204148 TTATTGAAATACCCTCGACTTGTAAAA
1 TTACCGAAATACCCTCGATTTGCAAAA
* * *
57204175 TTACC-AAAGTACCCTTGATTTACAGAA
1 TTACCGAAA-TACCCTCGATTTGCAAAA
***
57204202 TTACCGTTTTACCCTCGATTTGCAAAA
1 TTACCGAAATACCCTCGATTTGCAAAA
*
57204229 ATACCGAAATACCC
1 TTACCGAAATACCC
57204243 CTATAGAGTA
Statistics
Matches: 185, Mismatches: 37, Indels: 16
0.78 0.16 0.07
Matches are distributed among these distances:
26 6 0.03
27 174 0.94
28 5 0.03
ACGTcount: A:0.38, C:0.22, G:0.09, T:0.31
Consensus pattern (27 bp):
TTACCGAAATACCCTCGATTTGCAAAA
Found at i:57204264 original size:27 final size:27
Alignment explanation
Indices: 57204234--57204285 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
57204224 CAAAAATACC
57204234 GAAATACCCCTAT-AGAGTAGAATTACT
1 GAAATACCCCTATAAG-GTAGAATTACT
* *
57204261 GAAATACTCCTGTAAGGTAGAATTA
1 GAAATACCCCTATAAGGTAGAATTA
57204286 TCGAGATATC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
27 20 0.91
28 2 0.09
ACGTcount: A:0.40, C:0.15, G:0.17, T:0.27
Consensus pattern (27 bp):
GAAATACCCCTATAAGGTAGAATTACT
Found at i:57204792 original size:22 final size:22
Alignment explanation
Indices: 57204740--57204804 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
57204730 TTAAAGCCTT
* *
57204740 CTGATTATGGCTTTGTGTCAAC
1 CTGATTATGGCTCTGTGCCAAC
*
57204762 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
*
57204784 CTGATTATGGCTGTGTGCCAA
1 CTGATTATGGCTCTGTGCCAA
57204805 ACGTATTTGC
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 1 0.03
22 34 0.94
23 1 0.03
ACGTcount: A:0.20, C:0.23, G:0.23, T:0.34
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:57204993 original size:27 final size:27
Alignment explanation
Indices: 57204963--57205064 Score: 116
Period size: 27 Copynumber: 3.8 Consensus size: 27
57204953 ATTCTATTAA
* *
57204963 GTGGCTTTGCCACATTATCTGTTTCTG
1 GTGGCTCTGCCACAATATCTGTTTCTG
* *
57204990 GTGGCTATGCCACAAATATCTG-TTCCG
1 GTGGCTCTGCCAC-AATATCTGTTTCTG
* *
57205017 GTGGCCCTGCCACAATATCTGTATCTG
1 GTGGCTCTGCCACAATATCTGTTTCTG
* *
57205044 GTGACTCTGTCACAATATCTG
1 GTGGCTCTGCCACAATATCTG
57205065 ATAACTGAGC
Statistics
Matches: 63, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
26 8 0.13
27 48 0.76
28 7 0.11
ACGTcount: A:0.19, C:0.25, G:0.22, T:0.34
Consensus pattern (27 bp):
GTGGCTCTGCCACAATATCTGTTTCTG
Found at i:57205251 original size:31 final size:31
Alignment explanation
Indices: 57205214--57205311 Score: 126
Period size: 31 Copynumber: 3.2 Consensus size: 31
57205204 CTGATTTTTA
*
57205214 ATTCTGTTACCTGATATTGATTATGATTTTG
1 ATTCTGTTACCTGATATTGATTATGATTCTG
* *
57205245 ATTCTGTTACCTGATACTGATTCTGATTCTG
1 ATTCTGTTACCTGATATTGATTATGATTCTG
* * *
57205276 ATTCTGTCACCTAAT-TCTGATTTTGATTCTG
1 ATTCTGTTACCTGATAT-TGATTATGATTCTG
57205307 ATTCT
1 ATTCT
57205312 AGTTCTGATA
Statistics
Matches: 59, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
31 59 1.00
ACGTcount: A:0.20, C:0.16, G:0.14, T:0.49
Consensus pattern (31 bp):
ATTCTGTTACCTGATATTGATTATGATTCTG
Found at i:57205264 original size:6 final size:6
Alignment explanation
Indices: 57205231--57205320 Score: 60
Period size: 6 Copynumber: 14.7 Consensus size: 6
57205221 TACCTGATAT
* * *
57205231 TGATTA TGATTT TGATTC TG-TTACC TGATAC TGATTC TGATTC TGATTC
1 TGATTC TGATTC TGATTC TGATT--C TGATTC TGATTC TGATTC TGATTC
* * *
57205280 TG-TCACC TAATTC TGATTT TGATTC TGATTC T-AGTTC TGAT
1 TGAT--TC TGATTC TGATTC TGATTC TGATTC TGA-TTC TGAT
57205321 AATGTTTCTT
Statistics
Matches: 66, Mismatches: 10, Indels: 16
0.72 0.11 0.17
Matches are distributed among these distances:
5 4 0.06
6 54 0.82
7 6 0.09
8 2 0.03
ACGTcount: A:0.20, C:0.16, G:0.16, T:0.49
Consensus pattern (6 bp):
TGATTC
Found at i:57212853 original size:39 final size:39
Alignment explanation
Indices: 57212799--57212890 Score: 175
Period size: 39 Copynumber: 2.4 Consensus size: 39
57212789 AGTTTGAGTC
57212799 TTAATTATGTCATAATCTGAACATCTTTAATAAGGGATT
1 TTAATTATGTCATAATCTGAACATCTTTAATAAGGGATT
*
57212838 TTAATTATGTCATAATCTGAACATCTTTAGTAAGGGATT
1 TTAATTATGTCATAATCTGAACATCTTTAATAAGGGATT
57212877 TTAATTATGTCATA
1 TTAATTATGTCATA
57212891 GTCTAGAAAA
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 52 1.00
ACGTcount: A:0.35, C:0.10, G:0.13, T:0.42
Consensus pattern (39 bp):
TTAATTATGTCATAATCTGAACATCTTTAATAAGGGATT
Found at i:57228082 original size:40 final size:40
Alignment explanation
Indices: 57228038--57228241 Score: 264
Period size: 40 Copynumber: 5.1 Consensus size: 40
57228028 ATTACCGTTC
* * * * *
57228038 ATAGTCGAAGCTATCTCAAATCACACATTAAGTGCCATAT
1 ATAGCCGAAGCTATGTCGAATCGCACACTAAGTGCCATAT
** * * * *
57228078 ATAGTTGAAGCTATCTCGATCTCGTACACTAAGTGTCATAT
1 ATAGCCGAAGCTATGTCGA-ATCGCACACTAAGTGCCATAT
57228119 ATAGCCGAAGCTATGTCGAATCGCACACTAAGTGCCATAT
1 ATAGCCGAAGCTATGTCGAATCGCACACTAAGTGCCATAT
* * *
57228159 ATAGCAGAAGCTATGTTGAATCGCACACTAAGTGCCATGT
1 ATAGCCGAAGCTATGTCGAATCGCACACTAAGTGCCATAT
*
57228199 ATAGCCGAAGCTATGTCGAATCGCACACTAAGTGCCACAT
1 ATAGCCGAAGCTATGTCGAATCGCACACTAAGTGCCATAT
57228239 ATA
1 ATA
57228242 TCTGATTTGT
Statistics
Matches: 143, Mismatches: 20, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
40 111 0.78
41 32 0.22
ACGTcount: A:0.33, C:0.23, G:0.18, T:0.26
Consensus pattern (40 bp):
ATAGCCGAAGCTATGTCGAATCGCACACTAAGTGCCATAT
Found at i:57235623 original size:17 final size:18
Alignment explanation
Indices: 57235601--57235635 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
57235591 AATCTGTGTG
*
57235601 GGGCCCAC-GAGCCTATT
1 GGGCCCACACAGCCTATT
57235618 GGGCCCACACAGCCTATT
1 GGGCCCACACAGCCTATT
57235636 TCGACCACGA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.20, C:0.37, G:0.26, T:0.17
Consensus pattern (18 bp):
GGGCCCACACAGCCTATT
Found at i:57238714 original size:26 final size:28
Alignment explanation
Indices: 57238663--57238714 Score: 72
Period size: 26 Copynumber: 1.9 Consensus size: 28
57238653 CGTTTATAAA
**
57238663 TTCTCTTTGAGTTTTCTTTTTTAAGAAT
1 TTCTCTTTGAGTTTTCTTTTAAAAGAAT
57238691 TTCTCTTT-AG-TTTCTTTTAAAAGA
1 TTCTCTTTGAGTTTTCTTTTAAAAGA
57238715 GTTTTAACAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 12 0.55
27 2 0.09
28 8 0.36
ACGTcount: A:0.21, C:0.12, G:0.10, T:0.58
Consensus pattern (28 bp):
TTCTCTTTGAGTTTTCTTTTAAAAGAAT
Found at i:57239634 original size:52 final size:51
Alignment explanation
Indices: 57239505--57239636 Score: 158
Period size: 50 Copynumber: 2.6 Consensus size: 51
57239495 ATGTGTTCTG
* * * * *
57239505 CATTTAATAAAGTCAAGCATTATGTAACTCTCATGTTAGTTAAGTTTGCAT
1 CATTAAATTAAGTCATGCATTATGTAACTCCCATGTTAGTTAAGTTTCCAT
* * *
57239556 TA-TAAATTATGACATGCATTATGTAACTCCCATGTTAGTTAAAGTTTCCAT
1 CATTAAATTAAGTCATGCATTATGTAACTCCCATGTTAGTT-AAGTTTCCAT
* *
57239607 CATTGAATTAAGTCATGCATTAAGTAACTC
1 CATTAAATTAAGTCATGCATTATGTAACTC
57239637 ATTTGTTCAT
Statistics
Matches: 66, Mismatches: 13, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
50 32 0.48
51 11 0.17
52 23 0.35
ACGTcount: A:0.34, C:0.15, G:0.13, T:0.38
Consensus pattern (51 bp):
CATTAAATTAAGTCATGCATTATGTAACTCCCATGTTAGTTAAGTTTCCAT
Found at i:57239852 original size:27 final size:25
Alignment explanation
Indices: 57239822--57239871 Score: 73
Period size: 27 Copynumber: 1.9 Consensus size: 25
57239812 ATTCGTGTGC
57239822 ATGAGTGTTATTAAATATATTGTTTTT
1 ATGAGTGTT-TTAAAT-TATTGTTTTT
*
57239849 ATGAGTGTTTTAAGTTATTGTTT
1 ATGAGTGTTTTAAATTATTGTTT
57239872 AATGCTTAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 8 0.36
26 5 0.23
27 9 0.41
ACGTcount: A:0.26, C:0.00, G:0.18, T:0.56
Consensus pattern (25 bp):
ATGAGTGTTTTAAATTATTGTTTTT
Found at i:57242614 original size:49 final size:50
Alignment explanation
Indices: 57242534--57242766 Score: 292
Period size: 49 Copynumber: 4.7 Consensus size: 50
57242524 ATCTATTGTG
*
57242534 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
* * *
57242584 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGGGTACCCGG-TAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CCGGATAA-TT
* * * * * **
57242634 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
* * *
57242684 AGGTCACGTGTGTAGTACTAAGTGCAGGCTAATACGTGTATCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
*
57242734 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTA
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTA
57242767 TGCATACCAG
Statistics
Matches: 157, Mismatches: 22, Indels: 9
0.84 0.12 0.05
Matches are distributed among these distances:
49 68 0.43
50 54 0.34
51 35 0.22
ACGTcount: A:0.25, C:0.18, G:0.29, T:0.29
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
Found at i:57242671 original size:28 final size:28
Alignment explanation
Indices: 57242639--57242722 Score: 74
Period size: 28 Copynumber: 3.2 Consensus size: 28
57242629 AACTTCGATC
57242639 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
* * *
57242667 ACGTGTATCAG-A-T-GGT-TAGG-T-C-
1 ACGTGTGT-AGTACTAAGTGCAGGCTACT
*
57242689 ACGTGTGTAGTACTAAGTGCAGGCTAAT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
57242717 ACGTGT
1 ACGTGT
57242723 ATCGGATAAT
Statistics
Matches: 41, Mismatches: 7, Indels: 16
0.64 0.11 0.25
Matches are distributed among these distances:
21 2 0.05
22 8 0.20
23 2 0.05
24 3 0.07
25 6 0.15
26 3 0.07
27 1 0.02
28 14 0.34
29 2 0.05
ACGTcount: A:0.25, C:0.15, G:0.30, T:0.30
Consensus pattern (28 bp):
ACGTGTGTAGTACTAAGTGCAGGCTACT
Found at i:57245232 original size:49 final size:49
Alignment explanation
Indices: 57245179--57245276 Score: 178
Period size: 49 Copynumber: 2.0 Consensus size: 49
57245169 CAATCACCTA
* *
57245179 AGCTCACATATAACACCATACTTTCATTCAATTTGGTAATCAAAACAAT
1 AGCTCACATATAAAACCATACTTTCATTCAATTTGGAAATCAAAACAAT
57245228 AGCTCACATATAAAACCATACTTTCATTCAATTTGGAAATCAAAACAAT
1 AGCTCACATATAAAACCATACTTTCATTCAATTTGGAAATCAAAACAAT
57245277 CATTTCAAGA
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 47 1.00
ACGTcount: A:0.43, C:0.21, G:0.06, T:0.30
Consensus pattern (49 bp):
AGCTCACATATAAAACCATACTTTCATTCAATTTGGAAATCAAAACAAT
Found at i:57249192 original size:40 final size:41
Alignment explanation
Indices: 57249147--57249270 Score: 114
Period size: 40 Copynumber: 3.1 Consensus size: 41
57249137 TATAAACTAC
*
57249147 AATTCATTCA-T-ATAACTAGTAGTTCATCCATAT-AACCAGT
1 AATTCATTCAGTAATAAC-AGTAATTCATCCATATCAA-CAGT
* *
57249187 AATTCA-TCAGTAATAACAGTAATTTATCCGTATCAACAGT
1 AATTCATTCAGTAATAACAGTAATTCATCCATATCAACAGT
* * * * * *
57249227 AATTCA-TCCGTAACAATAGTAATTCATTCATTTCAAAAGT
1 AATTCATTCAGTAATAACAGTAATTCATCCATATCAACAGT
57249267 AATT
1 AATT
57249271 TATCCATTTC
Statistics
Matches: 70, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
39 3 0.04
40 60 0.86
41 7 0.10
ACGTcount: A:0.40, C:0.18, G:0.08, T:0.35
Consensus pattern (41 bp):
AATTCATTCAGTAATAACAGTAATTCATCCATATCAACAGT
Found at i:57249236 original size:20 final size:19
Alignment explanation
Indices: 57249147--57249253 Score: 97
Period size: 20 Copynumber: 5.4 Consensus size: 19
57249137 TATAAACTAC
* *
57249147 AATTCATTCATATAACTAGT
1 AATTCATCCGTATAAC-AGT
* *
57249167 AGTTCATCCATATAACCAGT
1 AATTCATCCGTATAA-CAGT
*
57249187 AATTCATCAGTAATAACAGT
1 AATTCATCCGT-ATAACAGT
*
57249207 AATTTATCCGTATCAACAGT
1 AATTCATCCGTAT-AACAGT
* *
57249227 AATTCATCCGTAACAATAGT
1 AATTCATCCGT-ATAACAGT
57249247 AATTCAT
1 AATTCAT
57249254 TCATTTCAAA
Statistics
Matches: 73, Mismatches: 10, Indels: 8
0.80 0.11 0.09
Matches are distributed among these distances:
19 2 0.03
20 65 0.89
21 6 0.08
ACGTcount: A:0.39, C:0.19, G:0.08, T:0.34
Consensus pattern (19 bp):
AATTCATCCGTATAACAGT
Found at i:57249267 original size:20 final size:20
Alignment explanation
Indices: 57249204--57249282 Score: 68
Period size: 20 Copynumber: 4.0 Consensus size: 20
57249194 CAGTAATAAC
* * * *
57249204 AGTAATTTATCCGTATCAAC
1 AGTAATTCATCCATTTCAAA
* ** *
57249224 AGTAATTCATCCGTAACAAT
1 AGTAATTCATCCATTTCAAA
*
57249244 AGTAATTCATTCATTTCAAA
1 AGTAATTCATCCATTTCAAA
*
57249264 AGTAATTTATCCATTTCAA
1 AGTAATTCATCCATTTCAA
57249283 CATAGGTTAT
Statistics
Matches: 49, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 49 1.00
ACGTcount: A:0.38, C:0.18, G:0.08, T:0.37
Consensus pattern (20 bp):
AGTAATTCATCCATTTCAAA
Found at i:57249480 original size:22 final size:22
Alignment explanation
Indices: 57249450--57249528 Score: 115
Period size: 22 Copynumber: 3.5 Consensus size: 22
57249440 TGAGTTGAGA
*
57249450 AACATTAAGCTCTATCGAGCTG
1 AACAGTAAGCTCTATCGAGCTG
57249472 AACAGTAAGCTCTATCGAGCTG
1 AACAGTAAGCTCTATCGAGCTG
57249494 AACAGTAAGCTC-ATACGAGCTG
1 AACAGTAAGCTCTAT-CGAGCTG
*
57249516 AATCGGTAAGCTC
1 AA-CAGTAAGCTC
57249529 CAATGAGCTA
Statistics
Matches: 53, Mismatches: 2, Indels: 3
0.91 0.03 0.05
Matches are distributed among these distances:
21 2 0.04
22 42 0.79
23 9 0.17
ACGTcount: A:0.33, C:0.23, G:0.22, T:0.23
Consensus pattern (22 bp):
AACAGTAAGCTCTATCGAGCTG
Found at i:57251050 original size:105 final size:104
Alignment explanation
Indices: 57250904--57251139 Score: 418
Period size: 105 Copynumber: 2.3 Consensus size: 104
57250894 ACCAATTAGG
* *
57250904 CCGTGTAGGCCACACGGGCATGTGGGCCCATATTGGGGCACCACATGGGCATGTGGAATTTTGGG
1 CCGTGTGGGCCACACGGGCGTGTGGGCCCATATTGGGGCACCACATGGGCATGTGGAATTTTGGG
57250969 CTAGGCCGTGTGATCCACACGGCCAAGGCCAATTTGGGC
66 CTAGGCCGTGTGATCCACACGGCCAAGGCCAATTTGGGC
* * *
57251008 CCGTGTGGGCCACACGGGGCGTGTGGGCCCATATTGGTGCACCACATGGGCGTGTGGAATTTTGT
1 CCGTGTGGGCCACAC-GGGCGTGTGGGCCCATATTGGGGCACCACATGGGCATGTGGAATTTTGG
57251073 GCTAGGCCGTGTGATCCACACGGCCAAGGCCAATTTGGGC
65 GCTAGGCCGTGTGATCCACACGGCCAAGGCCAATTTGGGC
57251113 CCGTGTGGGCCACACGGGCGTGTGGGC
1 CCGTGTGGGCCACACGGGCGTGTGGGC
57251140 TCACACGAGC
Statistics
Matches: 126, Mismatches: 5, Indels: 2
0.95 0.04 0.02
Matches are distributed among these distances:
104 26 0.21
105 100 0.79
ACGTcount: A:0.17, C:0.26, G:0.37, T:0.20
Consensus pattern (104 bp):
CCGTGTGGGCCACACGGGCGTGTGGGCCCATATTGGGGCACCACATGGGCATGTGGAATTTTGGG
CTAGGCCGTGTGATCCACACGGCCAAGGCCAATTTGGGC
Found at i:57252500 original size:23 final size:23
Alignment explanation
Indices: 57252457--57252501 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
57252447 GATATGTAAT
*
57252457 GCTCCCTTTAATTGATGATAACA
1 GCTCCCTTTAATTGAAGATAACA
*
57252480 GCTCCTTTTAA-TGAAGAATAAC
1 GCTCCCTTTAATTGAAG-ATAAC
57252502 TCTCCCTCTT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 4 0.21
23 15 0.79
ACGTcount: A:0.33, C:0.20, G:0.13, T:0.33
Consensus pattern (23 bp):
GCTCCCTTTAATTGAAGATAACA
Found at i:57252911 original size:50 final size:52
Alignment explanation
Indices: 57252808--57252916 Score: 134
Period size: 50 Copynumber: 2.1 Consensus size: 52
57252798 ATGAGTTATT
** *
57252808 TAATGCAAGACTTAATTTAATAATGCAGACTTAAACTAACATGGGAGTTACA
1 TAATGCAAGACTTAATTTAATAATGCAGACTTAAACTAACATGAAAGTCACA
* * *
57252860 TAATGCAAGTCATT-ATTT-ATGATGCATACTT-AACTAACATGAAAGTCACA
1 TAATGCAAGAC-TTAATTTAATAATGCAGACTTAAACTAACATGAAAGTCACA
57252910 TAATGCA
1 TAATGCA
57252917 TTACTTTATT
Statistics
Matches: 50, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
50 23 0.46
51 11 0.22
52 14 0.28
53 2 0.04
ACGTcount: A:0.41, C:0.15, G:0.14, T:0.30
Consensus pattern (52 bp):
TAATGCAAGACTTAATTTAATAATGCAGACTTAAACTAACATGAAAGTCACA
Found at i:57254595 original size:18 final size:18
Alignment explanation
Indices: 57254547--57254611 Score: 71
Period size: 18 Copynumber: 3.6 Consensus size: 18
57254537 GTTTCTTGGA
57254547 AACTTTCTTTTCTTTCTTC
1 AACTTTCTTTTCTTT-TTC
*
57254566 AA-TCTCTCTTTCTTTTTC
1 AACTTTCT-TTTCTTTTTC
*
57254584 AACTTTCTTTTCTTTCTC
1 AACTTTCTTTTCTTTTTC
*
57254602 -ACATTCTTTT
1 AACTTTCTTTT
57254612 TCGCTCTCAA
Statistics
Matches: 40, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
17 9 0.22
18 18 0.45
19 13 0.32
ACGTcount: A:0.12, C:0.26, G:0.00, T:0.62
Consensus pattern (18 bp):
AACTTTCTTTTCTTTTTC
Found at i:57255870 original size:31 final size:30
Alignment explanation
Indices: 57255810--57255866 Score: 96
Period size: 30 Copynumber: 1.9 Consensus size: 30
57255800 GATAGCAAAG
*
57255810 TGGTTAAAACAAAGAAAATGGATAATTACT
1 TGGTTAAAACAAAGAAAAAGGATAATTACT
*
57255840 TGGTTTAAACAAAGAAAAAGGATAATT
1 TGGTTAAAACAAAGAAAAAGGATAATT
57255867 TACTAAGGCG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.51, C:0.05, G:0.18, T:0.26
Consensus pattern (30 bp):
TGGTTAAAACAAAGAAAAAGGATAATTACT
Found at i:57256533 original size:23 final size:23
Alignment explanation
Indices: 57256490--57256533 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
57256480 GATGTGTAAG
*
57256490 GCTCCCTTTAATTGATGATAACA
1 GCTCCCTTTAATTGATAATAACA
*
57256513 GCTCCTTTTAA-TGAATAATAA
1 GCTCCCTTTAATTG-ATAATAA
57256534 TATTCCCCCT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 2 0.11
23 16 0.89
ACGTcount: A:0.34, C:0.18, G:0.11, T:0.36
Consensus pattern (23 bp):
GCTCCCTTTAATTGATAATAACA
Found at i:57256649 original size:9 final size:9
Alignment explanation
Indices: 57256635--57256708 Score: 54
Period size: 9 Copynumber: 8.7 Consensus size: 9
57256625 GACACCTGCA
57256635 ATTAAACAC
1 ATTAAACAC
57256644 ATTAAA-AC
1 ATTAAACAC
*
57256652 ---AAACAT
1 ATTAAACAC
57256658 ATTAAACAC
1 ATTAAACAC
57256667 ATTTAAACAC
1 A-TTAAACAC
*
57256677 TTCTTAAACAC
1 --ATTAAACAC
57256688 A--AAACAC
1 ATTAAACAC
57256695 ATTAAACAC
1 ATTAAACAC
57256704 -TTAAA
1 ATTAAA
57256709 TAAATGAACT
Statistics
Matches: 52, Mismatches: 4, Indels: 19
0.69 0.05 0.25
Matches are distributed among these distances:
5 3 0.06
6 1 0.02
7 7 0.13
8 7 0.13
9 18 0.35
10 8 0.15
11 8 0.15
ACGTcount: A:0.55, C:0.20, G:0.00, T:0.24
Consensus pattern (9 bp):
ATTAAACAC
Found at i:57256683 original size:11 final size:10
Alignment explanation
Indices: 57256636--57256703 Score: 54
Period size: 10 Copynumber: 6.8 Consensus size: 10
57256626 ACACCTGCAA
57256636 TTAAACACAT
1 TTAAACACAT
*
57256646 TAAAACAAACAT
1 TTAAAC--ACAT
57256658 ATTAAACACAT
1 -TTAAACACAT
*
57256669 TTAAACACTT
1 TTAAACACAT
57256679 CTTAAACACA-
1 -TTAAACACAT
57256689 --AAACACA-
1 TTAAACACAT
57256696 TTAAACAC
1 TTAAACAC
57256704 TTAAATAAAT
Statistics
Matches: 48, Mismatches: 4, Indels: 13
0.74 0.06 0.20
Matches are distributed among these distances:
7 7 0.15
9 6 0.12
10 14 0.29
11 12 0.25
12 4 0.08
13 5 0.10
ACGTcount: A:0.54, C:0.22, G:0.00, T:0.24
Consensus pattern (10 bp):
TTAAACACAT
Found at i:57258334 original size:55 final size:53
Alignment explanation
Indices: 57258179--57258362 Score: 163
Period size: 53 Copynumber: 3.4 Consensus size: 53
57258169 TTCCTTTTTA
* * * *
57258179 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTAGCCTTATG
1 AACTCACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTATG
* * * * *
57258232 AACTCACCATTGCCATGCCTTGGCATGGTCTTACATGAGATCTTTGCCTTATAG
1 AACTCACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAT-G
** * * * * * *
57258286 TAGTTTATCAATGTCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTGTAA
1 -AACTCACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAT-G
*
57258341 AAC-CTACCAATGCCATGCCTTG
1 AACTC-ACCAATGCCATGTCTTG
57258363 GCACGATCTA
Statistics
Matches: 102, Mismatches: 26, Indels: 5
0.77 0.20 0.04
Matches are distributed among these distances:
53 45 0.44
54 16 0.16
55 41 0.40
ACGTcount: A:0.23, C:0.24, G:0.17, T:0.36
Consensus pattern (53 bp):
AACTCACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTATG
Found at i:57260989 original size:27 final size:27
Alignment explanation
Indices: 57260959--57261013 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
57260949 ACTCACACTG
57260959 AGCTCTTTTGGCTTGCAACTCACTATC
1 AGCTCTTTTGGCTTGCAACTCACTATC
57260986 AGCTCTTTTGGCTTGCAACTCACTATC
1 AGCTCTTTTGGCTTGCAACTCACTATC
57261013 A
1 A
57261014 TCTTTCTGAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.20, C:0.29, G:0.15, T:0.36
Consensus pattern (27 bp):
AGCTCTTTTGGCTTGCAACTCACTATC
Found at i:57262838 original size:40 final size:40
Alignment explanation
Indices: 57262793--57262977 Score: 219
Period size: 40 Copynumber: 4.6 Consensus size: 40
57262783 CTTGCAGAAG
* * *
57262793 GCCTTCGGGTCTTAGCCCGGATGTGGTCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * *
57262833 GCCTTCGGGACTTAGCCCGGATATAATCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
** *
57262873 GCCTTCGGGTCTTAGCCCGGATATAG-CAACTCTCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAAT
* * * *
57262913 GCCTTCGGATCTTAGTCCGGTTATAGTCACCTAGCACAAAA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCA-CTAGCACAAAT
*
57262954 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
57262978 CATTCGAATA
Statistics
Matches: 119, Mismatches: 23, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
39 1 0.01
40 90 0.76
41 28 0.24
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.25
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:57271020 original size:40 final size:40
Alignment explanation
Indices: 57270974--57271158 Score: 219
Period size: 40 Copynumber: 4.6 Consensus size: 40
57270964 CTTGCAGAAG
* * *
57270974 GCCTTCGGGTCTTAGCCCGGATGTGGTCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * *
57271014 GCCTTCGGGACTTAGCCCGGATATAATCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
** *
57271054 GCCTTCGGGTCTTAGCCCGGATATAG-CAACTCTCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAAT
* * * *
57271094 GCCTTCGGATCTTAGTCCGGTTATAGTCACCTAGCACAAAA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCA-CTAGCACAAAT
*
57271135 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
57271159 CATTCGAATA
Statistics
Matches: 119, Mismatches: 23, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
39 1 0.01
40 90 0.76
41 28 0.24
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.25
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:57279811 original size:13 final size:15
Alignment explanation
Indices: 57279793--57279831 Score: 55
Period size: 16 Copynumber: 2.7 Consensus size: 15
57279783 GAAGATGGAT
57279793 AAATAAA-AAAA-AG
1 AAATAAATAAAATAG
57279806 AAATAAATAAAATAG
1 AAATAAATAAAATAG
57279821 AATATAAATAA
1 AA-ATAAATAA
57279832 GATAAAGATA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 7 0.30
14 4 0.17
15 4 0.17
16 8 0.35
ACGTcount: A:0.77, C:0.00, G:0.05, T:0.18
Consensus pattern (15 bp):
AAATAAATAAAATAG
Found at i:57282090 original size:7 final size:7
Alignment explanation
Indices: 57282080--57282104 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
57282070 TAAAAAGAGA
57282080 AAAAAAT
1 AAAAAAT
57282087 AAAAAAT
1 AAAAAAT
57282094 AAAAAAT
1 AAAAAAT
57282101 AAAA
1 AAAA
57282105 TAAATAAAGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (7 bp):
AAAAAAT
Found at i:57285730 original size:32 final size:32
Alignment explanation
Indices: 57285689--57285750 Score: 115
Period size: 32 Copynumber: 1.9 Consensus size: 32
57285679 CATCTATTTT
57285689 CATTGTTCAACTCTTTGACAACACGAAAAATC
1 CATTGTTCAACTCTTTGACAACACGAAAAATC
*
57285721 CATTGTTCAACTCTTTGACAACATGAAAAA
1 CATTGTTCAACTCTTTGACAACACGAAAAA
57285751 ACCAAAAGCT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.39, C:0.23, G:0.10, T:0.29
Consensus pattern (32 bp):
CATTGTTCAACTCTTTGACAACACGAAAAATC
Found at i:57287572 original size:7 final size:7
Alignment explanation
Indices: 57287546--57287579 Score: 50
Period size: 7 Copynumber: 4.6 Consensus size: 7
57287536 TATTCTATTA
57287546 TATTCTAT
1 TATT-TAT
57287554 TATTTAAT
1 TATTT-AT
57287562 TATTTAT
1 TATTTAT
57287569 TATTTAT
1 TATTTAT
57287576 TATT
1 TATT
57287580 ATAAATTGAA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
7 14 0.56
8 11 0.44
ACGTcount: A:0.29, C:0.03, G:0.00, T:0.68
Consensus pattern (7 bp):
TATTTAT
Found at i:57290474 original size:20 final size:20
Alignment explanation
Indices: 57290437--57290475 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
57290427 TATTTATGAT
*
57290437 TCCTTATTTCTATCTCATTA
1 TCCTTATTTCAATCTCATTA
* *
57290457 TCCTTGTTTCAATTTCATT
1 TCCTTATTTCAATCTCATT
57290476 TCATATTTTA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.18, C:0.23, G:0.03, T:0.56
Consensus pattern (20 bp):
TCCTTATTTCAATCTCATTA
Found at i:57298075 original size:53 final size:54
Alignment explanation
Indices: 57298007--57298213 Score: 202
Period size: 53 Copynumber: 3.8 Consensus size: 54
57297997 TTCCTTTTTA
* * *
57298007 AACTTACCATTGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-G
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* * * * * **
57298060 AACTCACCATTGCCATGCCTTGCCATAGTCTTACATGGGATGTTTGCCTTATAG
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
** * * * * * *
57298114 TAGTTTATCAATGCCAT-CTCTTGACATGGTCTTACATGATTTCCTTGCATTGTAA
1 -AACTTACCAATGCCATGC-CTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* *
57298169 AACTTACCAATGCCATGCCTTGGCATGGTCTTACTTGGTATCCTT
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTT
57298214 AAACCCTAAT
Statistics
Matches: 120, Mismatches: 30, Indels: 7
0.76 0.19 0.04
Matches are distributed among these distances:
53 44 0.37
54 38 0.32
55 38 0.32
ACGTcount: A:0.21, C:0.24, G:0.17, T:0.37
Consensus pattern (54 bp):
AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
Found at i:57304403 original size:27 final size:27
Alignment explanation
Indices: 57304368--57304479 Score: 165
Period size: 27 Copynumber: 4.2 Consensus size: 27
57304358 CTAGGCCCCC
57304368 TATGTGGTAAAATGACTGTTTTGCCCT
1 TATGTGGTAAAATGACTGTTTTGCCCT
57304395 TATGTGGTAAAATGACTGTTTTG-CCT
1 TATGTGGTAAAATGACTGTTTTGCCCT
*
57304421 TATGTGGTAAAATGACTATTTTGCCCT
1 TATGTGGTAAAATGACTGTTTTGCCCT
* * * *
57304448 TATATGGTAAGATGATTGCTTTGCCC-
1 TATGTGGTAAAATGACTGTTTTGCCCT
57304474 TATGTG
1 TATGTG
57304480 ATGTATATAT
Statistics
Matches: 77, Mismatches: 7, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
26 30 0.39
27 47 0.61
ACGTcount: A:0.23, C:0.13, G:0.22, T:0.41
Consensus pattern (27 bp):
TATGTGGTAAAATGACTGTTTTGCCCT
Found at i:57304425 original size:53 final size:53
Alignment explanation
Indices: 57304365--57304479 Score: 176
Period size: 53 Copynumber: 2.2 Consensus size: 53
57304355 TACCTAGGCC
* * *
57304365 CCCTATGTGGTAAAATGACTGTTTTGCCCTTATGTGGTAAAATGACTGTTTTG
1 CCCTATGTGGTAAAATGACTATTTTGCCCTTATATGGTAAAATGACTGCTTTG
* * *
57304418 CCTTATGTGGTAAAATGACTATTTTGCCCTTATATGGTAAGATGATTGCTTTG
1 CCCTATGTGGTAAAATGACTATTTTGCCCTTATATGGTAAAATGACTGCTTTG
57304471 CCCTATGTG
1 CCCTATGTG
57304480 ATGTATATAT
Statistics
Matches: 55, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
53 55 1.00
ACGTcount: A:0.23, C:0.16, G:0.22, T:0.40
Consensus pattern (53 bp):
CCCTATGTGGTAAAATGACTATTTTGCCCTTATATGGTAAAATGACTGCTTTG
Found at i:57308118 original size:26 final size:27
Alignment explanation
Indices: 57308054--57308125 Score: 119
Period size: 27 Copynumber: 2.7 Consensus size: 27
57308044 GTACCTAGAC
* *
57308054 CCCCTCTGTGGTAAAATGACTGTTTTG
1 CCCCTATGTGGTAAAATAACTGTTTTG
57308081 CCCCTATGTGGTAAAATAACTGTTTTG
1 CCCCTATGTGGTAAAATAACTGTTTTG
57308108 -CCCTATGTGGTAAAATAA
1 CCCCTATGTGGTAAAATAA
57308126 TTCTAGCGTG
Statistics
Matches: 43, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
26 18 0.42
27 25 0.58
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.35
Consensus pattern (27 bp):
CCCCTATGTGGTAAAATAACTGTTTTG
Found at i:57310271 original size:6 final size:6
Alignment explanation
Indices: 57310241--57310414 Score: 140
Period size: 6 Copynumber: 28.3 Consensus size: 6
57310231 AAGAAACACT
* *
57310241 ATCAGA A-CTAGA ATCAAA ATGAGA ATCAGA ATCAGA ATCAGA ATCAG-
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA
* * *
57310288 GTGACAGA ATCAAA ATCAGA ATCAGA ATCAGA ATTAGGTA A-CAGA ATCAGA
1 AT--CAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA
* * * *
57310339 ATCAGT ATCAGGTA A-CAGA ATCAGA ATCAGA ACCAGA ATCAAA ATTAGA
1 ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA
* * *
57310388 ATCAGGT AGCAGA ATCAAA ATCAGA AT
1 ATCA-GA ATCAGA ATCAGA ATCAGA AT
57310415 GTGAATGCCA
Statistics
Matches: 132, Mismatches: 24, Indels: 24
0.73 0.13 0.13
Matches are distributed among these distances:
5 6 0.05
6 109 0.83
7 13 0.10
8 4 0.03
ACGTcount: A:0.49, C:0.15, G:0.18, T:0.18
Consensus pattern (6 bp):
ATCAGA
Found at i:57310303 original size:43 final size:43
Alignment explanation
Indices: 57310250--57310411 Score: 146
Period size: 43 Copynumber: 3.9 Consensus size: 43
57310240 TATCAGAACT
*
57310250 AGAATCAAAATGAGAATCA-GAATCAGAATCAGAATCAGGTGAC
1 AGAATCAAAAT-AGAATCAGGAATCAGAATCAGAATCAGGTAAC
*
57310293 AGAATC---A-A-AATCA-GAATCAGAATCAGAATTAGGTAAC
1 AGAATCAAAATAGAATCAGGAATCAGAATCAGAATCAGGTAAC
* *
57310330 AGAATCAGAATCAGTATCAGGTAA-CAGAATCAGAATCA-G-AACC
1 AGAATCAAAAT-AGAATCAGG-AATCAGAATCAGAATCAGGTAA-C
* * *
57310373 AGAATCAAAATTAGAATCAGGTAGCAGAATCAAAATCAG
1 AGAATCAAAA-TAGAATCAGGAATCAGAATCAGAATCAG
57310412 AATGTGAATG
Statistics
Matches: 99, Mismatches: 8, Indels: 23
0.76 0.06 0.18
Matches are distributed among these distances:
37 33 0.33
38 1 0.01
40 2 0.02
42 4 0.04
43 42 0.42
44 15 0.15
45 2 0.02
ACGTcount: A:0.49, C:0.15, G:0.19, T:0.17
Consensus pattern (43 bp):
AGAATCAAAATAGAATCAGGAATCAGAATCAGAATCAGGTAAC
Found at i:57310305 original size:31 final size:31
Alignment explanation
Indices: 57310262--57310379 Score: 143
Period size: 31 Copynumber: 3.8 Consensus size: 31
57310252 AATCAAAATG
*
57310262 AGAATCAGAATCAGAATCAGAATCAGGTGAC
1 AGAATCAGAATCAGAATCAGAATCAGGTAAC
* *
57310293 AGAATCAAAATCAGAATCAGAATCA-G-AATT
1 AGAATCAGAATCAGAATCAGAATCAGGTAA-C
*
57310323 AGGTAA-CAGAATCAGAATCAGTATCAGGTAAC
1 A-G-AATCAGAATCAGAATCAGAATCAGGTAAC
*
57310355 AGAATCAGAATCAGAACCAGAATCA
1 AGAATCAGAATCAGAATCAGAATCA
57310380 AAATTAGAAT
Statistics
Matches: 73, Mismatches: 8, Indels: 12
0.78 0.09 0.13
Matches are distributed among these distances:
29 1 0.01
30 4 0.05
31 62 0.85
32 4 0.05
33 2 0.03
ACGTcount: A:0.48, C:0.16, G:0.19, T:0.17
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCAGAATCAGGTAAC
Found at i:57310307 original size:37 final size:37
Alignment explanation
Indices: 57310264--57310414 Score: 154
Period size: 37 Copynumber: 4.2 Consensus size: 37
57310254 TCAAAATGAG
*
57310264 AATCAGAATCAGAATCAGAATCAGGTGACAGAATCAA
1 AATCAGAATCAGAATCAGAATCAGGTAACAGAATCAA
* *
57310301 AATCAGAATCAGAATCAGAATTAGGTAACAGAATCAG
1 AATCAGAATCAGAATCAGAATCAGGTAACAGAATCAA
* * *
57310338 AATCAGTATCAG-GT---AA-CA-G-AATCAGAATCAG
1 AATCAGAATCAGAATCAGAATCAGGTAA-CAGAATCAA
* * * *
57310369 AACCAGAATCAAAATTAGAATCAGGTAGCAGAATCAA
1 AATCAGAATCAGAATCAGAATCAGGTAACAGAATCAA
57310406 AATCAGAAT
1 AATCAGAAT
57310415 GTGAATGCCA
Statistics
Matches: 93, Mismatches: 13, Indels: 16
0.76 0.11 0.13
Matches are distributed among these distances:
30 2 0.02
31 19 0.20
32 2 0.02
33 2 0.02
35 2 0.02
36 3 0.03
37 62 0.67
38 1 0.01
ACGTcount: A:0.49, C:0.15, G:0.18, T:0.18
Consensus pattern (37 bp):
AATCAGAATCAGAATCAGAATCAGGTAACAGAATCAA
Found at i:57310332 original size:25 final size:25
Alignment explanation
Indices: 57310304--57310414 Score: 119
Period size: 25 Copynumber: 4.7 Consensus size: 25
57310294 GAATCAAAAT
*
57310304 CAGAATCAGAATCAGAATTAGGTAA
1 CAGAATCAGAATCAGAATCAGGTAA
*
57310329 CAGAATCAGAATCAGTATCAGGTAA
1 CAGAATCAGAATCAGAATCAGGTAA
57310354 CAGAATCAGAATCAGAA-C------
1 CAGAATCAGAATCAGAATCAGGTAA
* * *
57310372 CAGAATCAAAATTAGAATCAGGTAG
1 CAGAATCAGAATCAGAATCAGGTAA
*
57310397 CAGAATCAAAATCAGAAT
1 CAGAATCAGAATCAGAAT
57310415 GTGAATGCCA
Statistics
Matches: 73, Mismatches: 6, Indels: 14
0.78 0.06 0.15
Matches are distributed among these distances:
18 15 0.21
19 1 0.01
24 1 0.01
25 56 0.77
ACGTcount: A:0.49, C:0.15, G:0.18, T:0.18
Consensus pattern (25 bp):
CAGAATCAGAATCAGAATCAGGTAA
Found at i:57310956 original size:27 final size:27
Alignment explanation
Indices: 57310926--57311092 Score: 153
Period size: 27 Copynumber: 6.2 Consensus size: 27
57310916 GGTAAAATGG
* *
57310926 TAATTTTACCCTACAAGGGTATCTCGA
1 TAATTCTACCCTACAAGGGTATTTCGA
* *
57310953 TAATTCTACCTTA-TAGGAGTATTTC-A
1 TAATTCTACCCTACAAGG-GTATTTCGA
*
57310979 GTAATTCTACCCTACAGGGGTATTTC-A
1 -TAATTCTACCCTACAAGGGTATTTCGA
* * *
57311006 GTATTTCTACCCAACAAGGGTATTTCGG
1 -TAATTCTACCCTACAAGGGTATTTCGA
* * *
57311034 TAATTCTACCCCACAGGGGTATTTTAGA
1 TAATTCTACCCTACAAGGGTA-TTTCGA
* *
57311062 -AATTCTACCCGACAGGGGTATTTCGA
1 TAATTCTACCCTACAAGGGTATTTCGA
57311088 TAATT
1 TAATT
57311093 TTGTAAACCA
Statistics
Matches: 116, Mismatches: 18, Indels: 12
0.79 0.12 0.08
Matches are distributed among these distances:
26 9 0.08
27 101 0.87
28 6 0.05
ACGTcount: A:0.28, C:0.20, G:0.17, T:0.34
Consensus pattern (27 bp):
TAATTCTACCCTACAAGGGTATTTCGA
Found at i:57311056 original size:81 final size:80
Alignment explanation
Indices: 57310928--57311085 Score: 217
Period size: 81 Copynumber: 2.0 Consensus size: 80
57310918 TAAAATGGTA
* ** * * *
57310928 ATTTTACCCTACAAGGGTATCTCGATAATTCTACCTTATAGGAGTATTTCAGTAATTCTACCCTA
1 ATTTTACCCAACAAGGGTATCTCGATAATTCTACCCCACAGGAGTATTTCAGAAATTCTACCCGA
57310993 CAGGGGTATTTCAGT
66 CAGGGGTATTTCAGT
* * * *
57311008 ATTTCTACCCAACAAGGGTATTTCGGTAATTCTACCCCACAGGGGTATTTTAGAAATTCTACCCG
1 ATTT-TACCCAACAAGGGTATCTCGATAATTCTACCCCACAGGAGTATTTCAGAAATTCTACCCG
57311073 ACAGGGGTATTTC
65 ACAGGGGTATTTC
57311086 GATAATTTTG
Statistics
Matches: 67, Mismatches: 10, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
80 4 0.06
81 63 0.94
ACGTcount: A:0.27, C:0.22, G:0.18, T:0.34
Consensus pattern (80 bp):
ATTTTACCCAACAAGGGTATCTCGATAATTCTACCCCACAGGAGTATTTCAGAAATTCTACCCGA
CAGGGGTATTTCAGT
Found at i:57311086 original size:54 final size:54
Alignment explanation
Indices: 57310971--57311092 Score: 172
Period size: 54 Copynumber: 2.3 Consensus size: 54
57310961 CCTTATAGGA
* * * *
57310971 GTATTTCAGTAATTCTACCCTACAGGGGTATTTCAGTATTTCTACCCAACAAGG
1 GTATTTCGGTAATTCTACCCCACAGGGGTATTTCAGAAATTCTACCCAACAAGG
* * *
57311025 GTATTTCGGTAATTCTACCCCACAGGGGTATTTTAGAAATTCTACCCGACAGGG
1 GTATTTCGGTAATTCTACCCCACAGGGGTATTTCAGAAATTCTACCCAACAAGG
*
57311079 GTATTTCGATAATT
1 GTATTTCGGTAATT
57311093 TTGTAAACCA
Statistics
Matches: 60, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 60 1.00
ACGTcount: A:0.27, C:0.20, G:0.19, T:0.34
Consensus pattern (54 bp):
GTATTTCGGTAATTCTACCCCACAGGGGTATTTCAGAAATTCTACCCAACAAGG
Found at i:57311105 original size:81 final size:79
Alignment explanation
Indices: 57310938--57311119 Score: 197
Period size: 81 Copynumber: 2.3 Consensus size: 79
57310928 ATTTTACCCT
* * ** * * *
57310938 ACAAGGGTATCTCGATAATTCTACCTTATAGGAGTATTTCAGTAATTCTACCCTACAGGGGTATT
1 ACAAGGGTATTTCGGTAATTCTACCCCACAGGAGTATTTCAGAAATTCTACCCGACAGGGGTATT
57311003 TCAGTATTTCTACCCA
66 TCAGTATTTCTA--CA
* *
57311019 ACAAGGGTATTTCGGTAATTCTACCCCACAGGGGTATTTTAGAAATTCTACCCGACAGGGGTATT
1 ACAAGGGTATTTCGGTAATTCTACCCCACAGGAGTATTTCAGAAATTCTACCCGACAGGGGTATT
*
57311084 TC-GATAATTTTGTA-A
66 TCAG-T-A-TTTCTACA
*
57311099 ACCAAGGGTATTTTGGTAATT
1 A-CAAGGGTATTTCGGTAATT
57311120 TTACAAACTA
Statistics
Matches: 86, Mismatches: 11, Indels: 8
0.82 0.10 0.08
Matches are distributed among these distances:
80 3 0.03
81 77 0.90
82 1 0.01
83 5 0.06
ACGTcount: A:0.29, C:0.18, G:0.19, T:0.34
Consensus pattern (79 bp):
ACAAGGGTATTTCGGTAATTCTACCCCACAGGAGTATTTCAGAAATTCTACCCGACAGGGGTATT
TCAGTATTTCTACA
Found at i:57311108 original size:54 final size:54
Alignment explanation
Indices: 57311050--57311201 Score: 153
Period size: 54 Copynumber: 2.8 Consensus size: 54
57311040 TACCCCACAG
** *
57311050 GGGTATTTTAGAAATTCTACCCGAC-AGGGGTATTTCGATAATTTTGTAAACCAA
1 GGGTATTTTAGAAATTCTA-CAAACTAGGGGTATTTCGATAATTTTATAAACCAA
* * * * * *
57311104 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTGATTTTATAAACCAA
1 GGGTATTTTAGAAATTCTACAAACTAGGGGTATTTCGATAATTTTATAAACCAA
* * * * * *
57311158 GGGTATTTTAGTAGTTTTACAAACCAGGGGTATTTTGGTAATTT
1 GGGTATTTTAGAAATTCTACAAACTAGGGGTATTTCGATAATTT
57311202 GGTAAACTAA
Statistics
Matches: 84, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
53 3 0.04
54 81 0.96
ACGTcount: A:0.29, C:0.10, G:0.22, T:0.39
Consensus pattern (54 bp):
GGGTATTTTAGAAATTCTACAAACTAGGGGTATTTCGATAATTTTATAAACCAA
Found at i:57311208 original size:27 final size:27
Alignment explanation
Indices: 57311074--57311201 Score: 157
Period size: 27 Copynumber: 4.7 Consensus size: 27
57311064 TTCTACCCGA
* * *
57311074 CAGGGGTATTTCGATAATTTTGTAAAC
1 CAGGGGTATTTTGGTAATTTTATAAAC
* *
57311101 CAAGGGTATTTTGGTAATTTTACAAAC
1 CAGGGGTATTTTGGTAATTTTATAAAC
* *
57311128 TAGGGGTATTTTGGTGATTTTATAAAC
1 CAGGGGTATTTTGGTAATTTTATAAAC
* * * *
57311155 CAAGGGTATTTTAGTAGTTTTACAAAC
1 CAGGGGTATTTTGGTAATTTTATAAAC
57311182 CAGGGGTATTTTGGTAATTT
1 CAGGGGTATTTTGGTAATTT
57311202 GGTAAACTAA
Statistics
Matches: 83, Mismatches: 18, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 83 1.00
ACGTcount: A:0.29, C:0.09, G:0.23, T:0.40
Consensus pattern (27 bp):
CAGGGGTATTTTGGTAATTTTATAAAC
Found at i:57311208 original size:54 final size:54
Alignment explanation
Indices: 57311074--57311208 Score: 198
Period size: 54 Copynumber: 2.5 Consensus size: 54
57311064 TTCTACCCGA
* * *
57311074 CAGGGGTATTTCGATAATTTTGTAAACCAAGGGTATTTTGGTAATTTTACAAAC
1 CAGGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTACAAAC
* * * *
57311128 TAGGGGTATTTTGGTGATTTTATAAACCAAGGGTATTTTAGTAGTTTTACAAAC
1 CAGGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTACAAAC
*
57311182 CAGGGGTATTTTGGTAATTTGGTAAAC
1 CAGGGGTATTTTGGTAATTTTGTAAAC
57311209 TAAAGTATTC
Statistics
Matches: 70, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
54 70 1.00
ACGTcount: A:0.30, C:0.09, G:0.23, T:0.39
Consensus pattern (54 bp):
CAGGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTACAAAC
Found at i:57313206 original size:6 final size:6
Alignment explanation
Indices: 57313176--57313368 Score: 119
Period size: 6 Copynumber: 31.3 Consensus size: 6
57313166 AAGAAACATT
* *
57313176 ATCAGA A-CTAGA ATCAAA ATGAGA ATCAGA ATCAGA ATCAGA ATCAG-
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA
* * * * * *
57313223 GTGACAAA ATCAAA ATCTGA ATCTGA ATCAGA ATTAGGTA A-CAGA ATCAGA
1 AT--CAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA
* * * *
57313274 ATCAGT ATCAGGTA AT-AGA ATTAGA ATCAGA ACCAGA ATCAGA ATTAGGTA
1 ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A
* *
57313325 A-CAGA ATCAGA ATCAGT ATCAGGTA AT-AGA ATCAAA ATCAGA AT
1 ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA AT
57313369 GTGAATGTAA
Statistics
Matches: 147, Mismatches: 23, Indels: 34
0.72 0.11 0.17
Matches are distributed among these distances:
5 12 0.08
6 115 0.78
7 11 0.07
8 9 0.06
ACGTcount: A:0.48, C:0.13, G:0.18, T:0.21
Consensus pattern (6 bp):
ATCAGA
Found at i:57313245 original size:37 final size:37
Alignment explanation
Indices: 57313190--57313284 Score: 118
Period size: 37 Copynumber: 2.6 Consensus size: 37
57313180 GAACTAGAAT
* *
57313190 CAAAATGAGAATCAGAATCAGAATCAGAATCAGGTGA
1 CAAAATCAGAATCAGAATCAGAATCAGAATCAGGTAA
* * * *
57313227 CAAAATCAAAATCTGAATCTGAATCAGAATTAGGTAA
1 CAAAATCAGAATCAGAATCAGAATCAGAATCAGGTAA
* *
57313264 CAGAATCAGAATCAGTATCAG
1 CAAAATCAGAATCAGAATCAG
57313285 GTAATAGAAT
Statistics
Matches: 47, Mismatches: 11, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
37 47 1.00
ACGTcount: A:0.47, C:0.15, G:0.18, T:0.20
Consensus pattern (37 bp):
CAAAATCAGAATCAGAATCAGAATCAGAATCAGGTAA
Found at i:57313305 original size:37 final size:37
Alignment explanation
Indices: 57313264--57313346 Score: 112
Period size: 37 Copynumber: 2.2 Consensus size: 37
57313254 AATTAGGTAA
* * *
57313264 CAGAATCAGAATCAGTATCAGGTAATAGAATTAGAAT
1 CAGAATCAGAATCAGAATCAGGTAACAGAATCAGAAT
* *
57313301 CAGAACCAGAATCAGAATTAGGTAACAGAATCAGAAT
1 CAGAATCAGAATCAGAATCAGGTAACAGAATCAGAAT
*
57313338 CAGTATCAG
1 CAGAATCAG
57313347 GTAATAGAAT
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.46, C:0.14, G:0.19, T:0.20
Consensus pattern (37 bp):
CAGAATCAGAATCAGAATCAGGTAACAGAATCAGAAT
Found at i:57313335 original size:25 final size:25
Alignment explanation
Indices: 57313202--57313368 Score: 98
Period size: 25 Copynumber: 6.7 Consensus size: 25
57313192 AAATGAGAAT
*
57313202 CAGAATCAGAATCAGAATCAGGTGA
1 CAGAATCAGAATCAGAATCAGGTAA
* * * *
57313227 CAAAATCAAAATCTGAATC-TG-AA
1 CAGAATCAGAATCAGAATCAGGTAA
*
57313250 TCAGAATTAGGTAA-CAGAATCA-G-AA
1 -CAGAATCA-G-AATCAGAATCAGGTAA
* *
57313275 TCAGTATCAGGTAAT-AGAATTA-G-AA
1 -CAGAATCA-G-AATCAGAATCAGGTAA
* *
57313300 TCAGAACCAGAATCAGAATTAGGTAA
1 -CAGAATCAGAATCAGAATCAGGTAA
*
57313326 CAGAATCAGAATCAGTATCAGGTAA
1 CAGAATCAGAATCAGAATCAGGTAA
* *
57313351 TAGAATCAAAATCAGAAT
1 CAGAATCAGAATCAGAAT
57313369 GTGAATGTAA
Statistics
Matches: 114, Mismatches: 20, Indels: 16
0.76 0.13 0.11
Matches are distributed among these distances:
23 4 0.04
24 15 0.13
25 91 0.80
26 4 0.04
ACGTcount: A:0.47, C:0.14, G:0.18, T:0.21
Consensus pattern (25 bp):
CAGAATCAGAATCAGAATCAGGTAA
Found at i:57313931 original size:27 final size:26
Alignment explanation
Indices: 57313898--57314042 Score: 132
Period size: 27 Copynumber: 5.4 Consensus size: 26
57313888 TTATCCCACA
* *
57313898 AGGGTATCTCGGTAATTCTACCTTAC
1 AGGGTATTTCAGTAATTCTACCTTAC
*
57313924 AGGAGTATTTCAGTAATTCTACCTTAT
1 AGG-GTATTTCAGTAATTCTACCTTAC
* *
57313951 AGGGGTATTTC-GTTATTTCTACCCTAC
1 A-GGGTATTTCAG-TAATTCTACCTTAC
* **
57313978 AAGGGTATTTTAGTAATTCTACCCCAC
1 -AGGGTATTTCAGTAATTCTACCTTAC
*
57314005 AAGGGTATTTTAGTAATTCTA-CTCTAC
1 -AGGGTATTTCAGTAATTCTACCT-TAC
57314032 AGGGGTATTTC
1 A-GGGTATTTC
57314043 GATAATTTTG
Statistics
Matches: 100, Mismatches: 12, Indels: 13
0.80 0.10 0.10
Matches are distributed among these distances:
26 6 0.06
27 90 0.90
28 4 0.04
ACGTcount: A:0.26, C:0.19, G:0.18, T:0.38
Consensus pattern (26 bp):
AGGGTATTTCAGTAATTCTACCTTAC
Found at i:57314011 original size:54 final size:53
Alignment explanation
Indices: 57313882--57314042 Score: 162
Period size: 54 Copynumber: 3.0 Consensus size: 53
57313872 GGGTAAAATG
* * * *
57313882 GTAATTTTATCCCACAAGGGTATCTCGGTAATTCTACCTTAC-AGGAGTATTTCA
1 GTAATTCTACCCCACAAGGGTATTTC-GTAATTCTACCCTACAAGG-GTATTTCA
** * * * *
57313936 GTAATTCTACCTTATAGGGGTATTTCGTTATTTCTACCCTACAAGGGTATTTTA
1 GTAATTCTACCCCACAAGGGTATTTCG-TAATTCTACCCTACAAGGGTATTTCA
* * *
57313990 GTAATTCTACCCCACAAGGGTATTTTAGTAATTCTACTCTACAGGGGTATTTC
1 GTAATTCTACCCCACAAGGGTA-TTTCGTAATTCTACCCTACAAGGGTATTTC
57314043 GATAATTTTG
Statistics
Matches: 85, Mismatches: 19, Indels: 6
0.77 0.17 0.05
Matches are distributed among these distances:
53 1 0.01
54 77 0.91
55 7 0.08
ACGTcount: A:0.26, C:0.19, G:0.17, T:0.38
Consensus pattern (53 bp):
GTAATTCTACCCCACAAGGGTATTTCGTAATTCTACCCTACAAGGGTATTTCA
Found at i:57314013 original size:81 final size:81
Alignment explanation
Indices: 57313895--57314043 Score: 203
Period size: 81 Copynumber: 1.8 Consensus size: 81
57313885 ATTTTATCCC
* ** *
57313895 ACAAGGGTATCTCGGTAATTCTACCTTACAGGAGTATTTCAGTAATTCTAC-CTTATAGGGGTAT
1 ACAAGGGTATCTCAGTAATTCTACCCCACAGGAGTATTTCAGTAATTCTACTC-TACAGGGGTAT
57313959 TTCGTTATTTCTACCCT
65 TTCGTTATTTCTACCCT
* * *
57313976 ACAAGGGTATTTTAGTAATTCTACCCCACAAGG-GTATTTTAGTAATTCTACTCTACAGGGGTAT
1 ACAAGGGTATCTCAGTAATTCTACCCCAC-AGGAGTATTTCAGTAATTCTACTCTACAGGGGTAT
57314040 TTCG
65 TTCG
57314044 ATAATTTTGT
Statistics
Matches: 59, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
81 55 0.93
82 4 0.07
ACGTcount: A:0.26, C:0.19, G:0.18, T:0.37
Consensus pattern (81 bp):
ACAAGGGTATCTCAGTAATTCTACCCCACAGGAGTATTTCAGTAATTCTACTCTACAGGGGTATT
TCGTTATTTCTACCCT
Found at i:57314062 original size:81 final size:80
Alignment explanation
Indices: 57313894--57314076 Score: 192
Period size: 81 Copynumber: 2.3 Consensus size: 80
57313884 AATTTTATCC
* ** ** *
57313894 CACAAGGGTATCTCGGTAATTCTACCTTACAGGAGTATTTCAGTAATTCTACCTTATAGGGGTAT
1 CACAAGGGTATTTTAGTAATTCTACCCCACAGGAGTATTTCAGTAATTCTACCTTACAGGGGTAT
* **
57313959 TTCGTTATTTCTACC
66 TTCGTAATTTCTAAA
*
57313974 CTACAAGGGTATTTTAGTAATTCTACCCCACAAGG-GTATTTTAGTAATTCTA-CTCTACAGGGG
1 C-ACAAGGGTATTTTAGTAATTCTACCCCAC-AGGAGTATTTCAGTAATTCTACCT-TACAGGGG
*
57314037 TATTTCGATAATTTTGTAAA
63 TATTTCG-TAA-TTTCTAAA
*
57314057 C-CAAGGGTATTTTGGTAATT
1 CACAAGGGTATTTTAGTAATT
57314077 TTACAAACTA
Statistics
Matches: 86, Mismatches: 12, Indels: 9
0.80 0.11 0.08
Matches are distributed among these distances:
80 3 0.03
81 72 0.84
82 5 0.06
83 6 0.07
ACGTcount: A:0.27, C:0.17, G:0.18, T:0.38
Consensus pattern (80 bp):
CACAAGGGTATTTTAGTAATTCTACCCCACAGGAGTATTTCAGTAATTCTACCTTACAGGGGTAT
TTCGTAATTTCTAAA
Found at i:57314165 original size:27 final size:27
Alignment explanation
Indices: 57314031--57314157 Score: 155
Period size: 27 Copynumber: 4.7 Consensus size: 27
57314021 TTCTACTCTA
* * *
57314031 CAGGGGTATTTCGATAATTTTGTAAAC
1 CAGGGGTATTTTGGTAATTTTATAAAC
* *
57314058 CAAGGGTATTTTGGTAATTTTACAAAC
1 CAGGGGTATTTTGGTAATTTTATAAAC
* *
57314085 TAGGGGTATTTTGGTGATTTTATAAAC
1 CAGGGGTATTTTGGTAATTTTATAAAC
** * *
57314112 CAAAGGTATTTTAGTAATTTTACAAAC
1 CAGGGGTATTTTGGTAATTTTATAAAC
57314139 CAGGGGTATTTTGGTAATT
1 CAGGGGTATTTTGGTAATT
57314158 CGGTAAACTA
Statistics
Matches: 82, Mismatches: 18, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 82 1.00
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.39
Consensus pattern (27 bp):
CAGGGGTATTTTGGTAATTTTATAAAC
Found at i:57314165 original size:54 final size:54
Alignment explanation
Indices: 57314008--57314174 Score: 194
Period size: 54 Copynumber: 3.1 Consensus size: 54
57313998 ACCCCACAAG
* ** * * *
57314008 GGTATTTTAGTAATTCTACTCTA-CAGGGGTATTTCGATAATTTTGTAAACCAAG
1 GGTATTTTAGTAATTTTAC-AAACCAGGGGTATTTTGGTAATTTTGTAAACCAAA
* * * *
57314062 GGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTGATTTTATAAACCAAA
1 GGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTGTAAACCAAA
** *
57314116 GGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTCGGTAAACTAAA
1 GGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTGTAAACCAAA
57314170 -GTATT
1 GGTATT
57314175 CTAAACAGGG
Statistics
Matches: 95, Mismatches: 17, Indels: 3
0.83 0.15 0.03
Matches are distributed among these distances:
53 6 0.06
54 89 0.94
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.40
Consensus pattern (54 bp):
GGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTGTAAACCAAA
Found at i:57319220 original size:23 final size:23
Alignment explanation
Indices: 57319175--57319264 Score: 69
Period size: 23 Copynumber: 3.8 Consensus size: 23
57319165 GAGCTGATGG
**
57319175 ACAGTAAGCTCTATTGAGC-TGAA
1 ACAGTAAGCTCTA-CAAGCTTGAA
57319198 ACAGTAAGCTCTGACAAG-TTGAA
1 ACAGTAAGCTCT-ACAAGCTTGAA
* * *
57319221 TCAATAAGCTCATACGAGCTT-AGA
1 ACAGTAAGCTC-TACAAGCTTGA-A
57319245 ACAGTAAGCTCTTACAAGCT
1 ACAGTAAGCTC-TACAAGCT
57319265 GATATATCGG
Statistics
Matches: 53, Mismatches: 9, Indels: 9
0.75 0.13 0.13
Matches are distributed among these distances:
23 32 0.60
24 21 0.40
ACGTcount: A:0.37, C:0.20, G:0.19, T:0.24
Consensus pattern (23 bp):
ACAGTAAGCTCTACAAGCTTGAA
Found at i:57319255 original size:47 final size:49
Alignment explanation
Indices: 57319197--57319290 Score: 129
Period size: 47 Copynumber: 1.9 Consensus size: 49
57319187 ATTGAGCTGA
*
57319197 AACAGTAAGCTCTGACAAGTTG-A-ATCAATAAGCTCATACGAGCTTAG
1 AACAGTAAGCTCTGACAAGCTGAATATCAATAAGCTCATACGAGCTTAG
* **
57319244 AACAGTAAGCTCTTACAAGCTGATATATCGGTAAGCTCATACGAGCT
1 AACAGTAAGCTCTGACAAGCTGA-ATATCAATAAGCTCATACGAGCT
57319291 GTGGTGAGTC
Statistics
Matches: 40, Mismatches: 4, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
47 20 0.50
49 1 0.03
50 19 0.47
ACGTcount: A:0.36, C:0.20, G:0.19, T:0.24
Consensus pattern (49 bp):
AACAGTAAGCTCTGACAAGCTGAATATCAATAAGCTCATACGAGCTTAG
Found at i:57319264 original size:24 final size:23
Alignment explanation
Indices: 57319197--57319264 Score: 75
Period size: 24 Copynumber: 2.9 Consensus size: 23
57319187 ATTGAGCTGA
*
57319197 AACAGTAAGCTCTGACAAG-TTG
1 AACAGTAAGCTCTTACAAGCTTG
* * *
57319219 AATCAATAAGCTCATACGAGCTTAG
1 AA-CAGTAAGCTCTTACAAGCTT-G
57319244 AACAGTAAGCTCTTACAAGCT
1 AACAGTAAGCTCTTACAAGCT
57319265 GATATATCGG
Statistics
Matches: 36, Mismatches: 7, Indels: 4
0.77 0.15 0.09
Matches are distributed among these distances:
22 2 0.06
23 13 0.36
24 18 0.50
25 3 0.08
ACGTcount: A:0.38, C:0.21, G:0.18, T:0.24
Consensus pattern (23 bp):
AACAGTAAGCTCTTACAAGCTTG
Found at i:57332351 original size:25 final size:25
Alignment explanation
Indices: 57332323--57332392 Score: 79
Period size: 25 Copynumber: 2.8 Consensus size: 25
57332313 CTCTTTTAAT
*
57332323 AACTGGGGCAAAGCCC-TTTCTGATA
1 AACTGGGGCAGAGCCCTTTTC-GATA
* * *
57332348 AACTGGGGTAGAGCTCTTTTCGGTA
1 AACTGGGGCAGAGCCCTTTTCGATA
*
57332373 CACTGGGGCAGAGCCCTTTT
1 AACTGGGGCAGAGCCCTTTT
57332393 AGCACTTCCT
Statistics
Matches: 37, Mismatches: 7, Indels: 2
0.80 0.15 0.04
Matches are distributed among these distances:
25 33 0.89
26 4 0.11
ACGTcount: A:0.21, C:0.23, G:0.29, T:0.27
Consensus pattern (25 bp):
AACTGGGGCAGAGCCCTTTTCGATA
Found at i:57332627 original size:27 final size:27
Alignment explanation
Indices: 57332597--57332811 Score: 252
Period size: 27 Copynumber: 8.0 Consensus size: 27
57332587 GGGGTAAAAT
* * *
57332597 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
57332624 GGTAATTCTACCTTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
57332651 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
57332678 AGTAATTTTACCTTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
57332705 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
57332732 GGTAATTCTACCTTAC-AGGGTTATTTC
1 GGTAATTCTACCCTACAAGGG-TATTTC
* * *
57332759 AGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
57332786 AGTAATTCTACCCTACAGGGGTATTT
1 GGTAATTCTACCCTACAAGGGTATTT
57332812 TCGTATTTTA
Statistics
Matches: 161, Mismatches: 25, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
26 3 0.02
27 155 0.96
28 3 0.02
ACGTcount: A:0.25, C:0.20, G:0.19, T:0.37
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:57332725 original size:81 final size:81
Alignment explanation
Indices: 57332598--57332819 Score: 313
Period size: 81 Copynumber: 2.7 Consensus size: 81
57332588 GGGTAAAATG
* * * * *
57332598 GTAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCTTATAGGGGTATTTCGGTATTTCTACC
1 GTAATTTTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACC
57332663 CTACAAGGG-TATTTCA
66 CTAC-AGGGTTATTTCA
* *
57332679 GTAATTTTACCTTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACC
1 GTAATTTTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACC
*
57332744 TTACAGGGTTATTTCA
66 CTACAGGGTTATTTCA
* * *
57332760 GTAATTCTACCCTATAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTTC-GTATTT
1 GTAATTTTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTA-TTTCGGTATTT
57332820 TACAAATCGA
Statistics
Matches: 126, Mismatches: 13, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
80 4 0.03
81 118 0.94
82 4 0.03
ACGTcount: A:0.25, C:0.19, G:0.18, T:0.38
Consensus pattern (81 bp):
GTAATTTTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACC
CTACAGGGTTATTTCA
Found at i:57332990 original size:82 final size:81
Alignment explanation
Indices: 57332804--57333010 Score: 262
Period size: 82 Copynumber: 2.6 Consensus size: 81
57332794 TACCCTACAG
* * * *
57332804 GGGTATTTTCGT-ATTTTACAAA-TCGAGAGTATTTT-GATAATTTCACAAATCAGGGGTATTTT
1 GGGTATTTTGGTAATTTTACAAACT-AAGGGTATTTTAG-TAATTTTACAAATCAGGGGTATTTT
*
57332866 GGTAATTTTACAAGCCAG
64 GGTAATTTTACAAGCCAA
*
57332884 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTAGTAATTTTACAAA-CTAGGGGTATTTTT
1 GGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTAGTAATTTTACAAATC-AGGGGTA-TTTT
57332948 GGTAATTTTACTAA-CCAA
64 GGTAATTTTAC-AAGCCAA
**
57332966 GGGTATTTTGGTAATTTTGTAAACTAAGGGTATTTTAGTAATTTT
1 GGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTAGTAATTTT
57333011 GTAAATCGAG
Statistics
Matches: 112, Mismatches: 9, Indels: 10
0.85 0.07 0.08
Matches are distributed among these distances:
80 12 0.11
81 36 0.32
82 62 0.55
83 2 0.02
ACGTcount: A:0.29, C:0.08, G:0.20, T:0.42
Consensus pattern (81 bp):
GGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTAGTAATTTTACAAATCAGGGGTATTTTGG
TAATTTTACAAGCCAA
Found at i:57333015 original size:27 final size:27
Alignment explanation
Indices: 57332802--57333010 Score: 235
Period size: 27 Copynumber: 7.7 Consensus size: 27
57332792 TCTACCCTAC
*
57332802 AGGGGTATTTTCGT-ATTTTACAAA-T
1 AGGGGTATTTTGGTAATTTTACAAACT
* * * *
57332827 CGAGAGTATTTTGATAATTTCACAAA-T
1 AG-GGGTATTTTGGTAATTTTACAAACT
* *
57332854 CAGGGGTATTTTGGTAATTTTACAAGCC
1 -AGGGGTATTTTGGTAATTTTACAAACT
57332882 AGGGGTATTTTGGTAATTTTACAAACT
1 AGGGGTATTTTGGTAATTTTACAAACT
*
57332909 AGGGGTATTTTAGTAATTTTACAAACT
1 AGGGGTATTTTGGTAATTTTACAAACT
* *
57332936 AGGGGTATTTTTGGTAATTTTACTAACC
1 AGGGGTA-TTTTGGTAATTTTACAAACT
* **
57332964 AAGGGTATTTTGGTAATTTTGTAAACT
1 AGGGGTATTTTGGTAATTTTACAAACT
* *
57332991 AAGGGTATTTTAGTAATTTT
1 AGGGGTATTTTGGTAATTTT
57333011 GTAAATCGAG
Statistics
Matches: 156, Mismatches: 23, Indels: 8
0.83 0.12 0.04
Matches are distributed among these distances:
25 1 0.01
26 9 0.06
27 122 0.78
28 24 0.15
ACGTcount: A:0.30, C:0.08, G:0.21, T:0.42
Consensus pattern (27 bp):
AGGGGTATTTTGGTAATTTTACAAACT
Found at i:57333022 original size:27 final size:27
Alignment explanation
Indices: 57332804--57333105 Score: 146
Period size: 27 Copynumber: 11.2 Consensus size: 27
57332794 TACCCTACAG
* ** *
57332804 GGGTATTTTCGT-ATTTTACAAATCGA
1 GGGTATTTTGGTAATTTTGTAAATCAA
* * *** *
57332830 GAGTATTTTGATAATTTCACAAATCAG
1 GGGTATTTTGGTAATTTTGTAAATCAA
** ** *
57332857 GGGTATTTTGGTAATTTTACAAGCCAG
1 GGGTATTTTGGTAATTTTGTAAATCAA
** *
57332884 GGGTATTTTGGTAATTTTACAAA-CTAG
1 GGGTATTTTGGTAATTTTGTAAATC-AA
* ** *
57332911 GGGTATTTTAGTAATTTTACAAA-CTAG
1 GGGTATTTTGGTAATTTTGTAAATC-AA
* *
57332938 GGGTATTTTTGGTAATTTTACT-AACCAA
1 GGGTA-TTTTGGTAATTTT-GTAAATCAA
57332966 GGGTATTTTGGTAATTTTGTAAA-CTAA
1 GGGTATTTTGGTAATTTTGTAAATC-AA
* *
57332993 GGGTATTTTAGTAATTTTGTAAATCGA
1 GGGTATTTTGGTAATTTTGTAAATCAA
**** * *
57333020 GGGTAAAACGGTAATTCTGTAAATCGA
1 GGGTATTTTGGTAATTTTGTAAATCAA
*** *
57333047 GGGTAAAATGGTAATTCTGTAAATCAA
1 GGGTATTTTGGTAATTTTGTAAATCAA
*** * * *
57333074 GGGTAAAATGGTAATTCTATAAATCGA
1 GGGTATTTTGGTAATTTTGTAAATCAA
57333101 GGGTA
1 GGGTA
57333106 AAACGGTAAT
Statistics
Matches: 238, Mismatches: 30, Indels: 15
0.84 0.11 0.05
Matches are distributed among these distances:
26 12 0.05
27 204 0.86
28 21 0.09
29 1 0.00
ACGTcount: A:0.32, C:0.08, G:0.22, T:0.37
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTGTAAATCAA
Found at i:57333130 original size:27 final size:27
Alignment explanation
Indices: 57333003--57333116 Score: 183
Period size: 27 Copynumber: 4.2 Consensus size: 27
57332993 GGGTATTTTA
*
57333003 GTAATTTTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
57333030 GTAATTCTGTAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
57333057 GTAATTCTGTAAATCAAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
57333084 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
57333111 GTAATT
1 GTAATT
57333117 TTACAAATTG
Statistics
Matches: 81, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 81 1.00
ACGTcount: A:0.39, C:0.08, G:0.24, T:0.30
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAACG
Done.