Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 177 of 349
Found at i:57336015 original size:27 final size:27
Alignment explanation
Indices: 57335985--57336204 Score: 271
Period size: 27 Copynumber: 8.1 Consensus size: 27
57335975 GGGGCAAAAA
* * *
57335985 GGTAATTTTACCCCACAAGGGTATCTT-
1 GGTAATTCTACCCTACAGGGGTAT-TTC
57336012 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
57336039 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
57336066 AGTAATTCTACCTTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
*
57336093 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
57336120 GGTAATTCTACCTTACAGGGTTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
** * *
57336147 AATAGTTCTACCCTACAGAGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
57336174 GGTAATTCTACCCTATAGGGGTATATC
1 GGTAATTCTACCCTACAGGGGTATTTC
57336201 GGTA
1 GGTA
57336205 TTTTACAGAT
Statistics
Matches: 165, Mismatches: 27, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
26 2 0.01
27 163 0.99
ACGTcount: A:0.25, C:0.20, G:0.20, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:57336121 original size:81 final size:81
Alignment explanation
Indices: 57335987--57336207 Score: 300
Period size: 81 Copynumber: 2.7 Consensus size: 81
57335977 GGCAAAAAGG
* * * *
57335987 TAATTTTACCCCACAAGGGTATCTTGGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCC
1 TAATTCTACCCTACAGGGGTATTTTGGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCC
*
57336052 TACAAGGG-TATTTCAG
66 TAC-AGGGTTATTTCAA
* * * *
57336068 TAATTCTACCTTACAGGGGTATTTTAGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCT
1 TAATTCTACCCTACAGGGGTATTTTGGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCC
57336133 TACAGGGTTATTTCAA
66 TACAGGGTTATTTCAA
* * * * *
57336149 TAGTTCTACCCTACAGAGGTATTTCGGTAATTCTACCCTATAGGGGTATATCGGTATTT
1 TAATTCTACCCTACAGGGGTATTTTGGTAATTCTACCCTACAGGGGTATTTCGGTATTT
57336208 TACAGATCGA
Statistics
Matches: 122, Mismatches: 17, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
80 4 0.03
81 118 0.97
ACGTcount: A:0.25, C:0.20, G:0.19, T:0.37
Consensus pattern (81 bp):
TAATTCTACCCTACAGGGGTATTTTGGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCC
TACAGGGTTATTTCAA
Found at i:57336234 original size:27 final size:27
Alignment explanation
Indices: 57336204--57336410 Score: 150
Period size: 27 Copynumber: 7.7 Consensus size: 27
57336194 GTATATCGGT
* * *
57336204 ATTTTACAGATCGAGAGTATTTTGATA
1 ATTTTACAAATCGAGGGTATTTTGGTA
*
57336231 ATTTCACAAATC-AGGGGTATTTTGGTA
1 ATTTTACAAATCGA-GGGTATTTTGGTA
* * *
57336258 ATTTTAC-AAGCCAGGGTATTTTGGTT
1 ATTTTACAAATCGAGGGTATTTTGGTA
* *
57336284 ATTTTACAAACCTG-GGGTATTTTTGTA
1 ATTTTACAAATC-GAGGGTATTTTGGTA
** *
57336311 ATTTTACTGATCGACGGTATTTTGGTA
1 ATTTTACAAATCGAGGGTATTTTGGTA
** * * *
57336338 ATTTTGTAAACCAAGGGTATTTTAGTA
1 ATTTTACAAATCGAGGGTATTTTGGTA
** *** *
57336365 ATTTTGTAAATCGAGGGTAAAATGGCA
1 ATTTTACAAATCGAGGGTATTTTGGTA
* *
57336392 ATTCTGCAAATCGAGGGTA
1 ATTTTACAAATCGAGGGTA
57336411 AAACGGTAAT
Statistics
Matches: 142, Mismatches: 33, Indels: 10
0.77 0.18 0.05
Matches are distributed among these distances:
26 24 0.17
27 118 0.83
ACGTcount: A:0.29, C:0.10, G:0.22, T:0.39
Consensus pattern (27 bp):
ATTTTACAAATCGAGGGTATTTTGGTA
Found at i:57336247 original size:53 final size:53
Alignment explanation
Indices: 57336190--57336369 Score: 175
Period size: 53 Copynumber: 3.4 Consensus size: 53
57336180 TCTACCCTAT
* * * *
57336190 AGGGGTATATCGGT-ATTTTACAGATCGAGAGTATTTTGATAATTTCACAAATC
1 AGGGGTATTTTGGTAATTTTACAGATCGAG-GTATTTTGGTAATTTCACAAACC
* * * *
57336243 AGGGGTATTTTGGTAATTTTACA-AGCCAGGGTATTTTGGTTATTTTACAAACC
1 AGGGGTATTTTGGTAATTTTACAGATCGA-GGTATTTTGGTAATTTCACAAACC
* * * ***
57336296 TGGGGTATTTTTGTAATTTTACTGATCGACGGTATTTTGGTAATTTTGTAAACC
1 AGGGGTATTTTGGTAATTTTACAGATCGA-GGTATTTTGGTAATTTCACAAACC
* *
57336350 AAGGGTATTTTAGTAATTTT
1 AGGGGTATTTTGGTAATTTT
57336370 GTAAATCGAG
Statistics
Matches: 104, Mismatches: 20, Indels: 5
0.81 0.16 0.04
Matches are distributed among these distances:
53 54 0.52
54 50 0.48
ACGTcount: A:0.27, C:0.09, G:0.22, T:0.42
Consensus pattern (53 bp):
AGGGGTATTTTGGTAATTTTACAGATCGAGGTATTTTGGTAATTTCACAAACC
Found at i:57336336 original size:54 final size:52
Alignment explanation
Indices: 57336204--57336369 Score: 170
Period size: 54 Copynumber: 3.1 Consensus size: 52
57336194 GTATATCGGT
* * * *
57336204 ATTTTACAGATCGAGAGTATTTTGATAATTTCACAAATCAGGGGTATTTTGGTA
1 ATTTTAC-GATCGAG-GTATTTTGGTAATTTTACAAACCAGGGGTATTTTAGTA
* * * * * *
57336258 ATTTTACAAGCCAGGGTATTTTGGTTATTTTACAAACCTGGGGTATTTTTGTA
1 ATTTTACGATCGA-GGTATTTTGGTAATTTTACAAACCAGGGGTATTTTAGTA
** *
57336311 ATTTTACTGATCGACGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTAGTA
1 ATTTTAC-GATCGA-GGTATTTTGGTAATTTTACAAACCAGGGGTATTTTAGTA
57336365 ATTTT
1 ATTTT
57336370 GTAAATCGAG
Statistics
Matches: 91, Mismatches: 19, Indels: 4
0.80 0.17 0.04
Matches are distributed among these distances:
53 42 0.46
54 49 0.54
ACGTcount: A:0.28, C:0.10, G:0.20, T:0.43
Consensus pattern (52 bp):
ATTTTACGATCGAGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTAGTA
Found at i:57336489 original size:27 final size:27
Alignment explanation
Indices: 57336362--57336475 Score: 156
Period size: 27 Copynumber: 4.2 Consensus size: 27
57336352 GGGTATTTTA
* *
57336362 GTAATTTTGTAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
57336389 GCAATTCTGCAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* **
57336416 GTAATTCTGTAAATCGAGGCTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
57336443 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
57336470 GTAATT
1 GTAATT
57336476 TTACAAATTG
Statistics
Matches: 74, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 74 1.00
ACGTcount: A:0.39, C:0.11, G:0.23, T:0.28
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAACG
Found at i:57336502 original size:54 final size:53
Alignment explanation
Indices: 57336372--57336488 Score: 135
Period size: 54 Copynumber: 2.2 Consensus size: 53
57336362 GTAATTTTGT
* * * ** **
57336372 AAATCGAGGGTAAAATGGCAATTCTGCAAATCGAGGGTAAAACGGTAATTCTGT
1 AAATCGA-GGCAAAATAGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTAC
*
57336426 AAATCGAGGCTAAAATAGTAATTCTATAAATCGAGGGTAAAACGGTAATTTTAC
1 AAATCGAGGC-AAAATAGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTAC
*
57336480 AAATTGAGG
1 AAATCGAGG
57336489 GCATTTCAGT
Statistics
Matches: 53, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
53 2 0.04
54 51 0.96
ACGTcount: A:0.40, C:0.11, G:0.23, T:0.26
Consensus pattern (53 bp):
AAATCGAGGCAAAATAGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTAC
Found at i:57338307 original size:47 final size:46
Alignment explanation
Indices: 57338248--57338468 Score: 176
Period size: 47 Copynumber: 4.7 Consensus size: 46
57338238 ACGAAGCTTA
57338248 GCCGATGCATGTCCCAGACACGTCTTACACTGGCTACCATCATTGAG
1 GCCGATGCATGTCCCAGACACGTCTTACACTGGCTACCATC-TTGAG
* * *
57338295 GCCGATGTATGTCCCAAACACGTCTTACACTGGC-ACTCATCTCT-AC
1 GCCGATGCATGTCCCAGACACGTCTTACACTGGCTAC-CATCT-TGAG
** * * * * * ** *
57338341 GTTGATGCCATGTCCTAGACATGGTCTTACAATGGCTATCGTAATGTG
1 GCCGATG-CATGTCCCAGACA-CGTCTTACACTGGCTACCATCTTGAG
* * * * ** *
57338389 GCTGATGCATGTCCCAGACACGTCTTACACTAGCCATCATCTCAAT
1 GCCGATGCATGTCCCAGACACGTCTTACACTGGCTACCATCTTGAG
*
57338435 GCCGATGCCATGTCCCAGACATGGTCTTACACTG
1 GCCGATG-CATGTCCCAGACA-CGTCTTACACTG
57338469 TCTCTCACAT
Statistics
Matches: 134, Mismatches: 32, Indels: 15
0.74 0.18 0.08
Matches are distributed among these distances:
46 30 0.22
47 73 0.54
48 30 0.22
49 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.27
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACACGTCTTACACTGGCTACCATCTTGAG
Found at i:57340051 original size:20 final size:19
Alignment explanation
Indices: 57340006--57340053 Score: 51
Period size: 20 Copynumber: 2.5 Consensus size: 19
57339996 ATTTTTGGAA
* *
57340006 AATTAATTTTAAAGTAATT
1 AATTAATTTTAAAGAAAAT
* *
57340025 AAATAATTATTAATGAAAAT
1 AATTAATT-TTAAAGAAAAT
57340045 AATTAATTT
1 AATTAATTT
57340054 GGGTCGAACA
Statistics
Matches: 23, Mismatches: 5, Indels: 2
0.77 0.17 0.07
Matches are distributed among these distances:
19 8 0.35
20 15 0.65
ACGTcount: A:0.52, C:0.00, G:0.04, T:0.44
Consensus pattern (19 bp):
AATTAATTTTAAAGAAAAT
Found at i:57340465 original size:21 final size:21
Alignment explanation
Indices: 57340432--57340471 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
57340422 CTCTCAATTC
*
57340432 AGCCGAAATTATTCTCAAAAGT
1 AGCCGAAAATATTCT-AAAAGT
57340454 AGCC-AAAATATTCTAAAA
1 AGCCGAAAATATTCTAAAA
57340472 TTTCTCAAGC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 4 0.24
21 9 0.53
22 4 0.24
ACGTcount: A:0.47, C:0.17, G:0.10, T:0.25
Consensus pattern (21 bp):
AGCCGAAAATATTCTAAAAGT
Found at i:57342388 original size:55 final size:53
Alignment explanation
Indices: 57342301--57342555 Score: 252
Period size: 55 Copynumber: 4.8 Consensus size: 53
57342291 ATTAGGGTTT
*
57342301 AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGC-ATTGGTAA-GTTTCTAAGGA
* * * * * *
57342356 AAGGATATCATGAAAGACCATGTCATGACATGGCATTGATAAGTTACTATAAGGCA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTT--TCTAAGG-A
* * * *
57342412 AAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAG-TTCATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTC-TAAGGA
* *
57342464 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTTTC--A--A
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTCTAAGGA
* * * * *
57342513 AAGGATACCACGTAAGACCATGACAAGTCATGGAAATGGTAAG
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAG
57342556 GTACCCGTGT
Statistics
Matches: 167, Mismatches: 27, Indels: 18
0.79 0.13 0.08
Matches are distributed among these distances:
49 39 0.23
51 1 0.01
52 5 0.03
53 41 0.25
54 11 0.07
55 65 0.39
56 5 0.03
ACGTcount: A:0.36, C:0.17, G:0.25, T:0.22
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTCTAAGGA
Found at i:57342507 original size:108 final size:110
Alignment explanation
Indices: 57342308--57342508 Score: 309
Period size: 108 Copynumber: 1.8 Consensus size: 110
57342298 TTTAAGGATA
*
57342308 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGAAAGGATATCATGAAAGA
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGAAAGGATACCATGAAAGA
* *
57342373 CCATGTCATGACATGGCATTGATAAGTTACTATAAGGCAAAGGTC
66 CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
* * *
57342418 CCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAG
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAAGGAAAGGATACCATGAAAG
*
57342480 ACCATGTCAAGACATGGCAATGGTAAGTT
65 ACCATGTCAAGACATGGCAATGATAAGTT
57342509 TCAAAAGGAT
Statistics
Matches: 83, Mismatches: 7, Indels: 4
0.88 0.07 0.04
Matches are distributed among these distances:
107 3 0.04
108 46 0.55
109 7 0.08
110 27 0.33
ACGTcount: A:0.34, C:0.17, G:0.25, T:0.23
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGAAAGGATACCATGAAAGA
CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
Found at i:57342650 original size:23 final size:24
Alignment explanation
Indices: 57342624--57342668 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
57342614 AAGGTAAGGT
*
57342624 AAGGTAAGACGAGTT-ATGCTAAA
1 AAGGTAAGACAAGTTCATGCTAAA
57342647 AAGGTAAGACAAGTTCATGCTA
1 AAGGTAAGACAAGTTCATGCTA
57342669 GAAGAGCAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 14 0.70
24 6 0.30
ACGTcount: A:0.42, C:0.11, G:0.24, T:0.22
Consensus pattern (24 bp):
AAGGTAAGACAAGTTCATGCTAAA
Found at i:57345375 original size:20 final size:21
Alignment explanation
Indices: 57345325--57345375 Score: 54
Period size: 20 Copynumber: 2.5 Consensus size: 21
57345315 ACCCTTCCCC
*
57345325 ATGCAATATGTCATGCATCAT
1 ATGCAATATATCATGCATCAT
*
57345346 AT-C-ATAATATCATGCAT-GT
1 ATGCAAT-ATATCATGCATCAT
57345365 ATGCAATATAT
1 ATGCAATATAT
57345376 ATAAAATGGC
Statistics
Matches: 25, Mismatches: 2, Indels: 7
0.74 0.06 0.21
Matches are distributed among these distances:
19 5 0.20
20 16 0.64
21 4 0.16
ACGTcount: A:0.37, C:0.16, G:0.12, T:0.35
Consensus pattern (21 bp):
ATGCAATATATCATGCATCAT
Found at i:57352120 original size:18 final size:17
Alignment explanation
Indices: 57352078--57352120 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
57352068 TAATGTAAAG
* *
57352078 GAGTGTTTTATTATGCT
1 GAGTGTTTTACTATACT
*
57352095 GCGTGTTTTACTATTACT
1 GAGTGTTTTACTA-TACT
57352113 GAGTGTTT
1 GAGTGTTT
57352121 GAGGAGTGTG
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
17 11 0.52
18 10 0.48
ACGTcount: A:0.16, C:0.09, G:0.23, T:0.51
Consensus pattern (17 bp):
GAGTGTTTTACTATACT
Found at i:57354207 original size:18 final size:19
Alignment explanation
Indices: 57354172--57354213 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
57354162 AATAAGGCCT
*
57354172 ATTT-GGATTTTATTTTTA
1 ATTTGGGATTTTATATTTA
57354190 ATTTGGGATTTTA-ATTTA
1 ATTTGGGATTTTATATTTA
*
57354208 CTTTGG
1 ATTTGG
57354214 TTATAACTGC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 13 0.62
19 8 0.38
ACGTcount: A:0.21, C:0.02, G:0.17, T:0.60
Consensus pattern (19 bp):
ATTTGGGATTTTATATTTA
Found at i:57357969 original size:49 final size:47
Alignment explanation
Indices: 57357886--57358388 Score: 706
Period size: 47 Copynumber: 10.6 Consensus size: 47
57357876 TATTTGAATA
*
57357886 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
** *
57357933 AATGTGAAAGTGTATATATATGTGATAAGGCTTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
57357982 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTAATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
57358029 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
*
57358078 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCTAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
57358125 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
57358174 AATGTGAACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
57358221 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
57358268 AATGTGAACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * * *
57358315 AATGTGAAAGTGTATATATGTGACAGGGCCTAGTGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
57358362 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
57358389 TCCCGAAGGG
Statistics
Matches: 419, Mismatches: 29, Indels: 16
0.90 0.06 0.03
Matches are distributed among these distances:
46 1 0.00
47 282 0.67
49 135 0.32
50 1 0.00
ACGTcount: A:0.34, C:0.09, G:0.29, T:0.28
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:57357994 original size:96 final size:96
Alignment explanation
Indices: 57357886--57358388 Score: 741
Period size: 96 Copynumber: 5.3 Consensus size: 96
57357876 TATTTGAATA
*
57357886 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
* *
57357951 TATGTGATAAGGCTTAATGGCCGATGTGATG
66 TATGTGATAAGGCCTAATGGCCAATGTGATG
* * *
57357982 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTAATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
*
57358047 TATGTGATAAGGCCTAATGGCCGATGTGATG
66 TATGTGATAAGGCCTAATGGCCAATGTGATG
*
57358078 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCTAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
*
57358143 TATGTGATAAGGCCGAATGGCCAATGTGATG
66 TATGTGATAAGGCCTAATGGCCAATGTGATG
* * *
57358174 AATGTGAACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TG--TG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-AGTGTATA
* *
57358235 TATGTGTGATAAGGCCGAATGGCCAATGTGATG
64 TATATGTGATAAGGCCTAATGGCCAATGTGATG
* *
57358268 AATGTGAACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG--TAT
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
* * *
57358330 ATATGTGACAGGGCCTAGTGGCCAATGTGATG
65 ATATGTGATAAGGCCTAATGGCCAATGTGATG
* *
57358362 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
57358389 TCCCGAAGGG
Statistics
Matches: 379, Mismatches: 24, Indels: 10
0.92 0.06 0.02
Matches are distributed among these distances:
93 2 0.01
94 140 0.37
96 235 0.62
97 2 0.01
ACGTcount: A:0.34, C:0.09, G:0.29, T:0.28
Consensus pattern (96 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
TATGTGATAAGGCCTAATGGCCAATGTGATG
Found at i:57360882 original size:38 final size:38
Alignment explanation
Indices: 57360818--57360892 Score: 107
Period size: 38 Copynumber: 2.0 Consensus size: 38
57360808 AATCCGAGTT
*
57360818 TAAAGACCCGCTGACTATATGAAGAGATTATGTCCGGG
1 TAAAGACCCGATGACTATATGAAGAGATTATGTCCGGG
* *
57360856 TAAAGACCCGATGGCTATGT-ACAGAGATTATGTCCGG
1 TAAAGACCCGATGACTATATGA-AGAGATTATGTCCGG
57360893 ATTAAAATTC
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
37 1 0.03
38 32 0.97
ACGTcount: A:0.31, C:0.19, G:0.27, T:0.24
Consensus pattern (38 bp):
TAAAGACCCGATGACTATATGAAGAGATTATGTCCGGG
Found at i:57361005 original size:40 final size:40
Alignment explanation
Indices: 57360946--57361168 Score: 421
Period size: 40 Copynumber: 5.6 Consensus size: 40
57360936 AGGTCTCGAC
57360946 GATG-ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
57360985 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
*
57361025 GATGTATCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
57361065 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
*
57361105 GATGTATCCGAGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
57361145 GATGTATCCGGGCTAAGTCCCGAA
1 GATGTATCCGGGCTAAGTCCCGAA
57361169 TATCCGGGCT
Statistics
Matches: 179, Mismatches: 4, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
39 4 0.02
40 175 0.98
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
Found at i:57361174 original size:20 final size:20
Alignment explanation
Indices: 57361149--57361188 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
57361139 GCTAGTGATG
57361149 TATCCGGGCTAAGTCCCGAA
1 TATCCGGGCTAAGTCCCGAA
*
57361169 TATCCGGGCTAAGTTCCGAA
1 TATCCGGGCTAAGTCCCGAA
57361189 GAGCATTCGT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.25, C:0.28, G:0.25, T:0.23
Consensus pattern (20 bp):
TATCCGGGCTAAGTCCCGAA
Found at i:57361202 original size:60 final size:60
Alignment explanation
Indices: 57361109--57361228 Score: 213
Period size: 60 Copynumber: 2.0 Consensus size: 60
57361099 GCTAGTGATG
57361109 TATCCGAGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAA
1 TATCCGAGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAA
* * *
57361169 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAA
1 TATCCGAGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAA
57361229 GAGCATTCAT
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
60 57 1.00
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (60 bp):
TATCCGAGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAA
Found at i:57361291 original size:180 final size:180
Alignment explanation
Indices: 57360989--57361348 Score: 684
Period size: 180 Copynumber: 2.0 Consensus size: 180
57360979 GCTAGTGATG
*
57360989 TATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCA
1 TATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCA
57361054 TTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGAGCT
66 TTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGAGCT
57361119 AAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAA
131 AAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAA
* *
57361169 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCA
1 TATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCA
*
57361234 TTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCT
66 TTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGAGCT
57361299 AAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAA
131 AAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAA
57361349 GAGCATTCAT
Statistics
Matches: 176, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
180 176 1.00
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (180 bp):
TATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCA
TTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGAGCT
AAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAA
Found at i:57361332 original size:220 final size:220
Alignment explanation
Indices: 57360950--57361388 Score: 833
Period size: 220 Copynumber: 2.0 Consensus size: 220
57360940 CTCGACGATG
57360950 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCAT
*
57361015 TCATGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTA
66 TCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTA
57361080 AGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGAGCTAAGTCCCGAAGAGCATTCATGCTAGT
131 AGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGAGCTAAGTCCCGAAGAGCATTCATGCTAGT
57361145 GATGTATCCGGGCTAAGTCCCGAAT
196 GATGTATCCGGGCTAAGTCCCGAAT
* *
57361170 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCAT
57361235 TCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTA
66 TCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTA
*
57361300 AGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
131 AGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGAGCTAAGTCCCGAAGAGCATTCATGCTAGT
*
57361365 GATGTATCCGGGCTAAGTTCCGAA
196 GATGTATCCGGGCTAAGTCCCGAA
57361389 GAGCATTCGT
Statistics
Matches: 214, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
220 214 1.00
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (220 bp):
ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCAT
TCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTA
AGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGAGCTAAGTCCCGAAGAGCATTCATGCTAGT
GATGTATCCGGGCTAAGTCCCGAAT
Found at i:57361485 original size:40 final size:40
Alignment explanation
Indices: 57361169--57361478 Score: 494
Period size: 40 Copynumber: 7.8 Consensus size: 40
57361159 AAGTCCCGAA
* *
57361169 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
1 TATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATG
57361209 TATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATG
1 TATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATG
57361249 TATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATG
1 TATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATG
57361289 TATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATG
1 TATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATG
57361329 TATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATG
1 TATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATG
* * *
57361369 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATA
1 TATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATG
* ** * * *
57361409 TATCCGTGCTAAACCCCGAAGAGCATTCATGCTGGTGTTA
1 TATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATG
* * *
57361449 TATCCGAGCTAGGTCCCGAAGAGCAATCAT
1 TATCCGGGCTAAGTCCCGAAGAGCATTCAT
57361479 CCTGGTGACG
Statistics
Matches: 253, Mismatches: 17, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 253 1.00
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
TATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATG
Found at i:57362882 original size:85 final size:85
Alignment explanation
Indices: 57362739--57362917 Score: 349
Period size: 85 Copynumber: 2.1 Consensus size: 85
57362729 GGCCGGCCAT
57362739 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
57362804 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
57362824 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
57362889 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
*
57362909 GGGCATGGG
1 GAGCATGGG
57362918 CAATAAAATA
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 93 1.00
ACGTcount: A:0.37, C:0.08, G:0.28, T:0.26
Consensus pattern (85 bp):
GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
GTAAGGATTAATAAAATAAA
Found at i:57364234 original size:47 final size:47
Alignment explanation
Indices: 57364180--57364677 Score: 756
Period size: 47 Copynumber: 10.6 Consensus size: 47
57364170 TATTTGAATA
*
57364180 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
57364227 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
57364276 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
*
57364323 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCC-ATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
57364371 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
57364418 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
57364465 AATGTGAACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
57364512 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
57364559 AATGTGAACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
*
57364606 AATGTGAAAGTGTATATATGTG--AAGGCCGAGTGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
57364651 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
57364678 TCCCGAAGGG
Statistics
Matches: 425, Mismatches: 17, Indels: 18
0.92 0.04 0.04
Matches are distributed among these distances:
45 42 0.10
46 26 0.06
47 264 0.62
48 21 0.05
49 72 0.17
ACGTcount: A:0.34, C:0.09, G:0.29, T:0.28
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:57364416 original size:22 final size:22
Alignment explanation
Indices: 57364388--57364463 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
57364378 AAGTGTATAT
57364388 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* * ***
57364410 ATGTGATGAATG-TGAAAGTGTATA
1 ATGTGAT-AAGGCCG-AA-TGGCCA
57364434 TATGTGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCCGAATGGCCA
57364457 ATGTGAT
1 ATGTGAT
57364464 GAATGTGAAC
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 15 0.38
23 8 0.21
24 8 0.21
25 8 0.21
ACGTcount: A:0.33, C:0.11, G:0.30, T:0.26
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:57368900 original size:19 final size:19
Alignment explanation
Indices: 57368856--57368901 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
57368846 ATCAAAGTCC
57368856 ATAAAAA-TCCATAAATTG
1 ATAAAAAGTCCATAAATTG
* *
57368874 ATATAAAGTCCAT-AATTT
1 ATAAAAAGTCCATAAATTG
57368892 ATTAAAAAGT
1 A-TAAAAAGT
57368902 TCCCTTCAGA
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
18 11 0.48
19 12 0.52
ACGTcount: A:0.52, C:0.09, G:0.07, T:0.33
Consensus pattern (19 bp):
ATAAAAAGTCCATAAATTG
Found at i:57369047 original size:14 final size:14
Alignment explanation
Indices: 57369028--57369058 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
57369018 AATCGCATAC
57369028 ATCTCAAAATATCA
1 ATCTCAAAATATCA
*
57369042 ATCTCAACATATCA
1 ATCTCAAAATATCA
57369056 ATC
1 ATC
57369059 ATCATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.45, C:0.26, G:0.00, T:0.29
Consensus pattern (14 bp):
ATCTCAAAATATCA
Found at i:57369051 original size:22 final size:22
Alignment explanation
Indices: 57369007--57369056 Score: 57
Period size: 22 Copynumber: 2.2 Consensus size: 22
57368997 GTGTGAGATC
57369007 ATCACAAATATAATCGCATACAT
1 ATCA-AAATATAATCGCATACAT
* *
57369030 CTCAAAATATCAATCTCA-ACAT
1 ATCAAAATAT-AATCGCATACAT
57369052 ATCAA
1 ATCAA
57369057 TCATCATAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
22 14 0.61
23 9 0.39
ACGTcount: A:0.48, C:0.24, G:0.02, T:0.26
Consensus pattern (22 bp):
ATCAAAATATAATCGCATACAT
Found at i:57371379 original size:17 final size:19
Alignment explanation
Indices: 57371337--57371380 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
57371327 ATGAAATTTT
*
57371337 AATTAGTATTATGAGATAA
1 AATTATTATTATGAGATAA
*
57371356 AATTATTATTATTAGA-AA
1 AATTATTATTATGAGATAA
57371374 AA-TATTA
1 AATTATTA
57371381 CTGTAAGTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 5 0.22
18 4 0.17
19 14 0.61
ACGTcount: A:0.50, C:0.00, G:0.09, T:0.41
Consensus pattern (19 bp):
AATTATTATTATGAGATAA
Found at i:57373822 original size:25 final size:25
Alignment explanation
Indices: 57373793--57373840 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
57373783 TTATAATATG
* * *
57373793 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
57373818 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
57373841 GTTTAAATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:57373897 original size:9 final size:9
Alignment explanation
Indices: 57373883--57373935 Score: 52
Period size: 9 Copynumber: 5.4 Consensus size: 9
57373873 ATAAACATGG
57373883 TATGTATGA
1 TATGTATGA
57373892 TATGTACATGA
1 TATGT--ATGA
*
57373903 CATGTATGA
1 TATGTATGA
*
57373912 TATGCACATGA
1 TATG--TATGA
57373923 TATGTATGA
1 TATGTATGA
57373932 TATG
1 TATG
57373936 CACATGATGT
Statistics
Matches: 36, Mismatches: 4, Indels: 8
0.75 0.08 0.17
Matches are distributed among these distances:
9 20 0.56
11 16 0.44
ACGTcount: A:0.34, C:0.08, G:0.21, T:0.38
Consensus pattern (9 bp):
TATGTATGA
Found at i:57373943 original size:20 final size:20
Alignment explanation
Indices: 57373877--57373943 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
57373867 ATTTTGATAA
* *
57373877 ACATGGTATGTATGATATGT
1 ACATGATATGTATGATATGC
*
57373897 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
57373917 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
57373937 ACATGAT
1 ACATGAT
57373944 GTATTCATAA
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.34, C:0.10, G:0.21, T:0.34
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:57374022 original size:23 final size:23
Alignment explanation
Indices: 57373992--57374064 Score: 128
Period size: 23 Copynumber: 3.1 Consensus size: 23
57373982 AGGAAGTGCA
57373992 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
57374015 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
57374038 AAAAGGGCTTTTGCCCCAGTTATT
1 -AAAGGGCTTATGCCCCAGTTATT
57374062 AAA
1 AAA
57374065 AGAGGCTAAG
Statistics
Matches: 48, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
23 26 0.54
24 22 0.46
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.30
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:57374081 original size:25 final size:24
Alignment explanation
Indices: 57373991--57374085 Score: 140
Period size: 24 Copynumber: 4.0 Consensus size: 24
57373981 GAGGAAGTGC
57373991 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
57374015 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
57374038 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
57374062 AAAAGAGGC-TAAGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
57374086 ATGATAAAGC
Statistics
Matches: 65, Mismatches: 3, Indels: 5
0.89 0.04 0.07
Matches are distributed among these distances:
23 23 0.35
24 31 0.48
25 11 0.17
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:57374314 original size:31 final size:31
Alignment explanation
Indices: 57374279--57374342 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
57374269 CGTTTACAGT
57374279 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
57374310 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
57374341 AA
1 AA
57374343 TATGAAAAGG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.38, C:0.16, G:0.23, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:57376371 original size:17 final size:19
Alignment explanation
Indices: 57376329--57376372 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
57376319 ATGAAATTTT
*
57376329 AATTAGTATTATGAGATAA
1 AATTATTATTATGAGATAA
*
57376348 AATTATTATTATTAGA-AA
1 AATTATTATTATGAGATAA
57376366 AA-TATTA
1 AATTATTA
57376373 CTGTAAGTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 5 0.22
18 4 0.17
19 14 0.61
ACGTcount: A:0.50, C:0.00, G:0.09, T:0.41
Consensus pattern (19 bp):
AATTATTATTATGAGATAA
Found at i:57378930 original size:20 final size:20
Alignment explanation
Indices: 57378864--57378930 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
57378854 ATTTTGATAA
*
57378864 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
* *
57378884 AGATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
57378904 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
57378924 ACATGAT
1 ACATGAT
57378931 GTATTCATAA
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.34, C:0.10, G:0.22, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:57379009 original size:23 final size:23
Alignment explanation
Indices: 57378979--57379051 Score: 128
Period size: 23 Copynumber: 3.1 Consensus size: 23
57378969 AGGAAGTGCA
57378979 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
57379002 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
57379025 AAAAGGGCTTTTGCCCCAGTTATT
1 -AAAGGGCTTATGCCCCAGTTATT
57379049 AAA
1 AAA
57379052 AGAGGCTAGG
Statistics
Matches: 48, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
23 26 0.54
24 22 0.46
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.30
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:57379034 original size:24 final size:24
Alignment explanation
Indices: 57378978--57379058 Score: 137
Period size: 24 Copynumber: 3.4 Consensus size: 24
57378968 GAGGAAGTGC
57378978 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
57379002 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
57379025 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
57379049 AAAAGAGGCT
1 AAAAG-GGCT
57379059 AGGCCTCCAT
Statistics
Matches: 54, Mismatches: 1, Indels: 3
0.93 0.02 0.05
Matches are distributed among these distances:
23 23 0.43
24 27 0.50
25 4 0.07
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:57379297 original size:7 final size:7
Alignment explanation
Indices: 57379285--57379312 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
57379275 GGCCCAGTGT
57379285 TATGAAA
1 TATGAAA
57379292 TATGAAA
1 TATGAAA
57379299 TATGAAA
1 TATGAAA
57379306 TATGAAA
1 TATGAAA
57379313 AGGGCTACGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.57, C:0.00, G:0.14, T:0.29
Consensus pattern (7 bp):
TATGAAA
Found at i:57382329 original size:40 final size:40
Alignment explanation
Indices: 57382301--57382463 Score: 245
Period size: 40 Copynumber: 4.1 Consensus size: 40
57382291 GTAAATACGT
*
57382301 TCAGGTGTACCAAAGTACTAACAGGGGCACGTATGTGCAA
1 TCAGGGGTACCAAAGTACTAACAGGGGCACGTATGTGCAA
* *
57382341 TCAGGGGTACCAAAGTACTAACAAGGGCAGGTATGTGCAA
1 TCAGGGGTACCAAAGTACTAACAGGGGCACGTATGTGCAA
* * *
57382381 TCAGGGGTACCGAAGTACTAACAGGGGCTCATATGTGCAA
1 TCAGGGGTACCAAAGTACTAACAGGGGCACGTATGTGCAA
* * *
57382421 CCAGGGGTACCAAAGTACAAATAGGGGCACGTATGTGCAA
1 TCAGGGGTACCAAAGTACTAACAGGGGCACGTATGTGCAA
57382461 TCA
1 TCA
57382464 TTCAACTAGT
Statistics
Matches: 108, Mismatches: 15, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 108 1.00
ACGTcount: A:0.33, C:0.20, G:0.29, T:0.18
Consensus pattern (40 bp):
TCAGGGGTACCAAAGTACTAACAGGGGCACGTATGTGCAA
Found at i:57382347 original size:20 final size:20
Alignment explanation
Indices: 57382322--57382463 Score: 58
Period size: 20 Copynumber: 7.1 Consensus size: 20
57382312 AAAGTACTAA
57382322 CAGGGGCACGTATGTGCAAT
1 CAGGGGCACGTATGTGCAAT
* ** * *
57382342 CAGGGGTACCAAAGTACTAA-
1 CAGGGGCACGTATGTGC-AAT
* *
57382362 CAAGGGCAGGTATGTGCAAT
1 CAGGGGCACGTATGTGCAAT
* * *
57382382 CAGGGGTACCG-AAGTACTAA-
1 CAGGGGCA-CGTATGTGC-AAT
* * *
57382402 CAGGGGCTCATATGTGCAAC
1 CAGGGGCACGTATGTGCAAT
* ** * *
57382422 CAGGGGTACCAAAGTACAAAT
1 CAGGGGCACGTATGTGC-AAT
57382443 -AGGGGCACGTATGTGCAAT
1 CAGGGGCACGTATGTGCAAT
57382462 CA
1 CA
57382464 TTCAACTAGT
Statistics
Matches: 80, Mismatches: 34, Indels: 16
0.62 0.26 0.12
Matches are distributed among these distances:
19 8 0.10
20 65 0.81
21 7 0.09
ACGTcount: A:0.32, C:0.20, G:0.30, T:0.18
Consensus pattern (20 bp):
CAGGGGCACGTATGTGCAAT
Found at i:57386884 original size:21 final size:21
Alignment explanation
Indices: 57386843--57386884 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
57386833 TATAAGTAGC
*
57386843 CTTGTAATGGTTGGTATATGG
1 CTTGTAATGGTTGGAATATGG
*
57386864 CTTGTTATGGTT-GAATGATGG
1 CTTGTAATGGTTGGAAT-ATGG
57386885 TAGATAGAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
20 3 0.17
21 15 0.83
ACGTcount: A:0.19, C:0.05, G:0.33, T:0.43
Consensus pattern (21 bp):
CTTGTAATGGTTGGAATATGG
Found at i:57388132 original size:15 final size:17
Alignment explanation
Indices: 57388098--57388136 Score: 55
Period size: 15 Copynumber: 2.4 Consensus size: 17
57388088 TGGTTGTTTG
57388098 TGAAAAAGGAGAGAAAA
1 TGAAAAAGGAGAGAAAA
*
57388115 TGAAAAAGGA-A-TAAA
1 TGAAAAAGGAGAGAAAA
57388130 TGAAAAA
1 TGAAAAA
57388137 AAAATAATAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 10 0.48
16 1 0.05
17 10 0.48
ACGTcount: A:0.67, C:0.00, G:0.23, T:0.10
Consensus pattern (17 bp):
TGAAAAAGGAGAGAAAA
Found at i:57391185 original size:22 final size:22
Alignment explanation
Indices: 57391160--57391209 Score: 100
Period size: 22 Copynumber: 2.3 Consensus size: 22
57391150 TTTTCGGCAA
57391160 TATTATCATGTTTTGTTTTATT
1 TATTATCATGTTTTGTTTTATT
57391182 TATTATCATGTTTTGTTTTATT
1 TATTATCATGTTTTGTTTTATT
57391204 TATTAT
1 TATTAT
57391210 GGCTTTATTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.20, C:0.04, G:0.08, T:0.68
Consensus pattern (22 bp):
TATTATCATGTTTTGTTTTATT
Found at i:57395159 original size:8 final size:8
Alignment explanation
Indices: 57395142--57395176 Score: 54
Period size: 8 Copynumber: 4.5 Consensus size: 8
57395132 TTATTACTAA
57395142 ATAA-AAT
1 ATAATAAT
57395149 ATAATAAT
1 ATAATAAT
57395157 ATAATAAT
1 ATAATAAT
*
57395165 ATAATAAA
1 ATAATAAT
57395173 ATAA
1 ATAA
57395177 AGAATGAATA
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
7 4 0.15
8 22 0.85
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (8 bp):
ATAATAAT
Found at i:57398961 original size:43 final size:42
Alignment explanation
Indices: 57398914--57399015 Score: 100
Period size: 43 Copynumber: 2.4 Consensus size: 42
57398904 ATCAAATATC
*
57398914 GATGCCACTGTCCTAGACAGGGTCTTACACGTAATCTCTAA-TT
1 GATGCCACTGTCCTAGACAGAGTCTTACACG-AATCTC-AAGTT
* * * * * *
57398957 GATGCTAGTGCCCCAAACATAGTCTTACACGAATCTCAAGTT
1 GATGCCACTGTCCTAGACAGAGTCTTACACGAATCTCAAGTT
57398999 GATGCCAAC-GTCCTAGA
1 GATGCC-ACTGTCCTAGA
57399016 TGTGGTTTTA
Statistics
Matches: 45, Mismatches: 12, Indels: 5
0.73 0.19 0.08
Matches are distributed among these distances:
41 2 0.04
42 18 0.40
43 25 0.56
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (42 bp):
GATGCCACTGTCCTAGACAGAGTCTTACACGAATCTCAAGTT
Found at i:57400873 original size:18 final size:17
Alignment explanation
Indices: 57400850--57400898 Score: 71
Period size: 18 Copynumber: 2.8 Consensus size: 17
57400840 GATGGGTTAA
*
57400850 AAAAATAAATTAATAATG
1 AAAAATAAATAAATAA-G
57400868 AAAAATAAATAAATAAG
1 AAAAATAAATAAATAAG
*
57400885 AAAAATAAACAAAT
1 AAAAATAAATAAAT
57400899 GACTTAAAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
17 14 0.48
18 15 0.52
ACGTcount: A:0.73, C:0.02, G:0.04, T:0.20
Consensus pattern (17 bp):
AAAAATAAATAAATAAG
Found at i:57402718 original size:13 final size:13
Alignment explanation
Indices: 57402700--57402731 Score: 64
Period size: 13 Copynumber: 2.5 Consensus size: 13
57402690 ACCTCTTGGA
57402700 TTGCCAAGCCAAT
1 TTGCCAAGCCAAT
57402713 TTGCCAAGCCAAT
1 TTGCCAAGCCAAT
57402726 TTGCCA
1 TTGCCA
57402732 CCCACAACTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.28, C:0.31, G:0.16, T:0.25
Consensus pattern (13 bp):
TTGCCAAGCCAAT
Found at i:57403662 original size:41 final size:40
Alignment explanation
Indices: 57403573--57403761 Score: 209
Period size: 40 Copynumber: 4.7 Consensus size: 40
57403563 ACTCGATATC
* * * * *
57403573 TCGCACACAAAGTTCCAT-TCATAGTTGAAGCTATCTCAAA
1 TCGCACACTAAGTGCCATAT-ATAGCTGAAGCTATGTCGAA
* * * * *
57403613 TTGCACACTAAGTGTCATATATAGCTGAATCTATCTCGATC
1 TCGCACACTAAGTGCCATATATAGCTGAAGCTATGTCGA-A
* * *
57403654 TCGCACACTAAGTTCCATATATAGCCGAAGCTATGTCAAA
1 TCGCACACTAAGTGCCATATATAGCTGAAGCTATGTCGAA
57403694 TCGCACACTAAGTGCCATATATAGCTGAAGCTATGTCGAA
1 TCGCACACTAAGTGCCATATATAGCTGAAGCTATGTCGAA
* * *
57403734 TCGCATACTAAGTGCCACATATATCTGA
1 TCGCACACTAAGTGCCATATATAGCTGA
57403762 TTTGTTGTCA
Statistics
Matches: 125, Mismatches: 22, Indels: 4
0.83 0.15 0.03
Matches are distributed among these distances:
40 92 0.74
41 33 0.26
ACGTcount: A:0.33, C:0.24, G:0.15, T:0.28
Consensus pattern (40 bp):
TCGCACACTAAGTGCCATATATAGCTGAAGCTATGTCGAA
Found at i:57403705 original size:81 final size:81
Alignment explanation
Indices: 57403570--57403756 Score: 243
Period size: 81 Copynumber: 2.3 Consensus size: 81
57403560 AATACTCGAT
* ** * *
57403570 ATCTCGCACACAAAGTTCCAT-TCATAGTTGAAGCTATCTCAAATTGCACACTAAGTGTCATATA
1 ATCTCGCACACTAAGTTCCATAT-ATAGCCGAAGCTATCTCAAATCGCACACTAAGTGCCATATA
*
57403634 TAGCTGAATCTATCTCG
65 TAGCTGAAGCTATCTCG
*
57403651 ATCTCGCACACTAAGTTCCATATATAGCCGAAGCTATGTCAAATCGCACACTAAGTGCCATATAT
1 ATCTCGCACACTAAGTTCCATATATAGCCGAAGCTATCTCAAATCGCACACTAAGTGCCATATAT
*
57403716 AGCTGAAGCTATGTCG
66 AGCTGAAGCTATCTCG
* * * *
57403732 A-ATCGCATACTAAGTGCCACATATA
1 ATCTCGCACACTAAGTTCCATATATA
57403757 TCTGATTTGT
Statistics
Matches: 93, Mismatches: 12, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
80 20 0.22
81 72 0.77
82 1 0.01
ACGTcount: A:0.33, C:0.24, G:0.15, T:0.28
Consensus pattern (81 bp):
ATCTCGCACACTAAGTTCCATATATAGCCGAAGCTATCTCAAATCGCACACTAAGTGCCATATAT
AGCTGAAGCTATCTCG
Found at i:57409993 original size:47 final size:45
Alignment explanation
Indices: 57409881--57410003 Score: 142
Period size: 47 Copynumber: 2.6 Consensus size: 45
57409871 TCACTTGTGT
**
57409881 GAGCTAGTGTAAGACATGTCTAGGACAT-GCATCGACGACATTTTGA
1 GAGCTAGTGTAAGACATGTCTAGGACATGGCAT--ACGACATTGAGA
* *
57409927 GAGCTAGTATAAGACCATGTCTGGGACATGGCAT-CGACATTGAGA
1 GAGCTAGTGTAAGA-CATGTCTAGGACATGGCATACGACATTGAGA
57409972 CGAGTGCTAGTGTAAGACATGTCTAGGACATG
1 -GA--GCTAGTGTAAGACATGTCTAGGACATG
57410004 CTTCGGCCTC
Statistics
Matches: 66, Mismatches: 6, Indels: 9
0.81 0.07 0.11
Matches are distributed among these distances:
45 9 0.14
46 15 0.23
47 27 0.41
48 15 0.23
ACGTcount: A:0.30, C:0.17, G:0.28, T:0.24
Consensus pattern (45 bp):
GAGCTAGTGTAAGACATGTCTAGGACATGGCATACGACATTGAGA
Found at i:57411255 original size:20 final size:21
Alignment explanation
Indices: 57411214--57411255 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
57411204 TTAGAATTAA
*
57411214 TTCCACATGGGCGTGTTGCCC
1 TTCCACACGGGCGTGTTGCCC
57411235 TTCCACACGGGCGTG-TGCCC
1 TTCCACACGGGCGTGTTGCCC
57411255 T
1 T
57411256 GTTTTAAAGA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
20 6 0.30
21 14 0.70
ACGTcount: A:0.10, C:0.36, G:0.29, T:0.26
Consensus pattern (21 bp):
TTCCACACGGGCGTGTTGCCC
Found at i:57411459 original size:22 final size:22
Alignment explanation
Indices: 57411431--57411473 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
57411421 CGAGTTTAAG
57411431 GTTAGATAATGCCTTGTATTTT
1 GTTAGATAATGCCTTGTATTTT
57411453 GTTAGATAATGCCTTGTATTT
1 GTTAGATAATGCCTTGTATTT
57411474 CGTCCCAACG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.23, C:0.09, G:0.19, T:0.49
Consensus pattern (22 bp):
GTTAGATAATGCCTTGTATTTT
Found at i:57417700 original size:21 final size:22
Alignment explanation
Indices: 57417660--57417700 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
57417650 TTCCAAATAA
* *
57417660 AACATTATATCATTTCTAATTC
1 AACATTATATCAATTATAATTC
57417682 AACATT-TATCAATTATAAT
1 AACATTATATCAATTATAAT
57417701 CGGGCATGTG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 11 0.65
22 6 0.35
ACGTcount: A:0.41, C:0.15, G:0.00, T:0.44
Consensus pattern (22 bp):
AACATTATATCAATTATAATTC
Found at i:57421004 original size:40 final size:40
Alignment explanation
Indices: 57420960--57421219 Score: 319
Period size: 39 Copynumber: 6.7 Consensus size: 40
57420950 GCTCCTCGTT
* *
57420960 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
57421000 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
57421040 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTC-CA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
57421078 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
57421117 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
57421156 -AAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
57421196 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
57421220 CATCATTCAA
Statistics
Matches: 201, Mismatches: 9, Indels: 21
0.87 0.04 0.09
Matches are distributed among these distances:
37 2 0.01
38 48 0.24
39 90 0.45
40 59 0.29
41 2 0.01
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:57421115 original size:77 final size:78
Alignment explanation
Indices: 57420960--57421219 Score: 313
Period size: 77 Copynumber: 3.3 Consensus size: 78
57420950 GCTCCTCGTT
* * *
57420960 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCACAAATGCCTTCGGGACTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCACAAATGCCTTCGGG-CTTAGCCC
*
57421023 GGATTTAGTAACTCGCA
63 GGAATTAGT-ACTCGCA
57421040 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTC-CACAAATGCCTTCGGGCTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGGCTTAGCCCGGA
57421103 ATTAGTATCTCGCA
66 ATTAGTA-CTCGCA
* *
57421117 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA-AAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGG-GCTTAGCCCGG
*
57421180 ATATT-GTCACTTAGCA
65 A-ATTAGT-AC-TCGCA
57421196 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
57421220 CATCATTCAA
Statistics
Matches: 164, Mismatches: 7, Indels: 20
0.86 0.04 0.10
Matches are distributed among these distances:
76 1 0.01
77 78 0.48
78 46 0.28
79 24 0.15
80 15 0.09
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (78 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGGCTTAGCCCGGA
ATTAGTACTCGCA
Found at i:57428931 original size:39 final size:39
Alignment explanation
Indices: 57428814--57429023 Score: 298
Period size: 39 Copynumber: 5.3 Consensus size: 39
57428804 GCTCCTCGTT
* * *
57428814 CAAATGCCTTCGGGACATAGTCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGT-ATCTCGCA
* * * *
57428854 GAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
57428894 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
57428933 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
*
57428972 CAAATGCCTTCGGGCTTAGCCCGAAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
57429011 CAAATGCCTTCGG
1 CAAATGCCTTCGG
57429024 ATCTTAGTTC
Statistics
Matches: 158, Mismatches: 10, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
39 113 0.72
40 43 0.27
41 2 0.01
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
Found at i:57429059 original size:78 final size:78
Alignment explanation
Indices: 57428849--57429073 Score: 278
Period size: 78 Copynumber: 2.9 Consensus size: 78
57428839 TTATAGTAAT
* * * * *
57428849 TCGCAGAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGGCTTAGC
1 TCGCACAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTAGCACAAATGCCTTCGGGCTTAGC
*
57428914 CCGGAATTAGTATC
65 CCGAAATTAGTATC
*
57428928 TCGCACAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGGCTTAGCC
1 TCGCACAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTAGCACAAATGCCTTCGGGCTTAGCC
57428993 CGAAATTAGTATC
66 CGAAATTAGTATC
* **
57429006 TCGCACAAATGCCTTCGGATCTTAGTTCGGATATT-GTCA-CTTAGCAC-AA-GCCTTCGGGACT
1 TCGCACAAATGCCTTCGG-GCTTAGCCCGGA-ATTAGT-ATC-TAGCACAAATGCCTTCGGG-CT
57429067 TAGCCCG
61 TAGCCCG
57429074 GACATCATTC
Statistics
Matches: 132, Mismatches: 9, Indels: 10
0.87 0.06 0.07
Matches are distributed among these distances:
78 82 0.62
79 41 0.31
80 9 0.07
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (78 bp):
TCGCACAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTAGCACAAATGCCTTCGGGCTTAGCC
CGAAATTAGTATC
Found at i:57429070 original size:118 final size:120
Alignment explanation
Indices: 57428814--57429075 Score: 308
Period size: 118 Copynumber: 2.2 Consensus size: 120
57428804 GCTCCTCGTT
* * * *
57428814 CAAATGCCTTCGGGACATAGTCCGG-TTATAGTAATTCGCAGAAATGCCTTCGGGACTTAACCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCG
* * *
57428878 GATTTAGTAACTCGCACAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
66 AAATTAGTAACTCGCACAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTAGCA
*
57428933 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGT-ATCTCGCACAAATGCCTTCGGG-CTTAGCCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAAT-TCGCACAAATGCCTTCGGGACTTAACCC
* * **
57428994 GAAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTTCGGATATT-GTCA-CTTAGCA
65 GAAATTAGTAACTCGCACAAATGCCTTCGG-GCTTAGCCCGGA-ATTAGT-ATC-TAGCA
57429052 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
57429076 CATCATTCAA
Statistics
Matches: 124, Mismatches: 12, Indels: 15
0.82 0.08 0.10
Matches are distributed among these distances:
117 45 0.36
118 55 0.44
119 24 0.19
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (120 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCG
AAATTAGTAACTCGCACAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTAGCA
Found at i:57432156 original size:21 final size:22
Alignment explanation
Indices: 57432116--57432156 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
57432106 TTCCAAATAA
* *
57432116 AACATTATATCATTTCTAATTC
1 AACATTATATCAATTATAATTC
57432138 AACATT-TATCAATTATAAT
1 AACATTATATCAATTATAAT
57432157 CGCGCATGTG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 11 0.65
22 6 0.35
ACGTcount: A:0.41, C:0.15, G:0.00, T:0.44
Consensus pattern (22 bp):
AACATTATATCAATTATAATTC
Found at i:57433374 original size:15 final size:16
Alignment explanation
Indices: 57433347--57433376 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
57433337 AGATATTCCA
57433347 ATTTAGTCCCATTTTT
1 ATTTAGTCCCATTTTT
57433363 ATTTAG-CCCATTTT
1 ATTTAGTCCCATTTT
57433377 GGCAATTTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.20, C:0.20, G:0.07, T:0.53
Consensus pattern (16 bp):
ATTTAGTCCCATTTTT
Found at i:57450502 original size:27 final size:27
Alignment explanation
Indices: 57450406--57450511 Score: 117
Period size: 27 Copynumber: 4.0 Consensus size: 27
57450396 GCATGGCTGT
* * *
57450406 CAGAACAGATAA-TGTGACAGAGTCGC
1 CAGAACAGATAATTGTGGCAGAGCCAC
* * *
57450432 CATAACAGATAATCGTGCCAGAGCCAC
1 CAGAACAGATAATTGTGGCAGAGCCAC
57450459 CAGAACAGAT-ATATGTGGCAGAGCCAC
1 CAGAACAGATAAT-TGTGGCAGAGCCAC
* *
57450486 CAGATCAGATAATTGTGGCATAGCCA
1 CAGAACAGATAATTGTGGCAGAGCCA
57450512 TTAGGACGCT
Statistics
Matches: 67, Mismatches: 10, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
26 13 0.19
27 52 0.78
28 2 0.03
ACGTcount: A:0.37, C:0.23, G:0.24, T:0.17
Consensus pattern (27 bp):
CAGAACAGATAATTGTGGCAGAGCCAC
Found at i:57456082 original size:15 final size:15
Alignment explanation
Indices: 57456055--57456094 Score: 57
Period size: 16 Copynumber: 2.7 Consensus size: 15
57456045 AGTTTTTTTC
57456055 TTTT-TTTTT-AAAA
1 TTTTGTTTTTGAAAA
57456068 TTTTGTTTTTGAAAA
1 TTTTGTTTTTGAAAA
57456083 TCTTTGTTTTTG
1 T-TTTGTTTTTG
57456095 TAAACCCATT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
13 4 0.17
14 5 0.21
15 5 0.21
16 10 0.42
ACGTcount: A:0.20, C:0.03, G:0.10, T:0.68
Consensus pattern (15 bp):
TTTTGTTTTTGAAAA
Found at i:57456088 original size:16 final size:16
Alignment explanation
Indices: 57456053--57456094 Score: 61
Period size: 15 Copynumber: 2.8 Consensus size: 16
57456043 CGAGTTTTTT
*
57456053 TCTTT-TTTTTTAAAA
1 TCTTTGTTTTTGAAAA
57456068 T-TTTGTTTTTGAAAA
1 TCTTTGTTTTTGAAAA
57456083 TCTTTGTTTTTG
1 TCTTTGTTTTTG
57456095 TAAACCCATT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
14 3 0.12
15 11 0.46
16 10 0.42
ACGTcount: A:0.19, C:0.05, G:0.10, T:0.67
Consensus pattern (16 bp):
TCTTTGTTTTTGAAAA
Found at i:57457127 original size:27 final size:26
Alignment explanation
Indices: 57457068--57457178 Score: 143
Period size: 27 Copynumber: 4.2 Consensus size: 26
57457058 AGCATGGCTG
*
57457068 CCAGAACAGATAATGTGACAGA-CTCA
1 CCAGAACAGATAATGTGGCAGAGC-CA
57457094 CCAGAACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATAAT-GTGGCAGAGCCA
*
57457121 CCGGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
57457148 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
57457175 CCAG
1 CCAG
57457179 GACGCTTCCT
Statistics
Matches: 76, Mismatches: 5, Indels: 7
0.86 0.06 0.08
Matches are distributed among these distances:
26 15 0.20
27 58 0.76
28 3 0.04
ACGTcount: A:0.36, C:0.24, G:0.24, T:0.15
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:57457735 original size:17 final size:18
Alignment explanation
Indices: 57457696--57457737 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 18
57457686 TCCACGCACA
*
57457696 AACTACCTACATTTATAT
1 AACTACCTACATTAATAT
* *
57457714 TACTACC-ACATTAATCT
1 AACTACCTACATTAATAT
57457731 AACTACC
1 AACTACC
57457738 GAAACGAACT
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
17 14 0.70
18 6 0.30
ACGTcount: A:0.38, C:0.29, G:0.00, T:0.33
Consensus pattern (18 bp):
AACTACCTACATTAATAT
Found at i:57458645 original size:24 final size:24
Alignment explanation
Indices: 57458618--57458686 Score: 93
Period size: 24 Copynumber: 2.9 Consensus size: 24
57458608 ATTCTCCCAA
*
57458618 ATCATCTCCTAAATCCTCTCCCTT
1 ATCAACTCCTAAATCCTCTCCCTT
* *
57458642 ATCAGCTCCTACATCCTCTCCCTT
1 ATCAACTCCTAAATCCTCTCCCTT
* *
57458666 GTCAACTCCTAAATCTTCTCC
1 ATCAACTCCTAAATCCTCTCC
57458687 TGACAGCCTT
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 39 1.00
ACGTcount: A:0.20, C:0.42, G:0.03, T:0.35
Consensus pattern (24 bp):
ATCAACTCCTAAATCCTCTCCCTT
Found at i:57460215 original size:46 final size:46
Alignment explanation
Indices: 57460147--57460321 Score: 169
Period size: 46 Copynumber: 3.8 Consensus size: 46
57460137 TGTAACCCGC
* * * *
57460147 CCATAAGTGAACTTGGATTCAACTCAACGAGCTCGGGCGTTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTTGTAT
* *
57460193 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTATAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-C-ATTTGTAT
* * * * *
57460243 CTC-T---CGAACTCGGACTCAACTCAACAAGTTCGGACATTCGTAT
1 C-CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTTGTAT
*
57460286 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
57460322 ATGCTCAACC
Statistics
Matches: 105, Mismatches: 15, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
42 1 0.01
43 7 0.07
44 1 0.01
46 61 0.58
47 26 0.25
48 1 0.01
49 1 0.01
50 6 0.06
51 1 0.01
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.24
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTTGTAT
Found at i:57460267 original size:93 final size:93
Alignment explanation
Indices: 57460155--57460325 Score: 261
Period size: 93 Copynumber: 1.8 Consensus size: 93
57460145 GCCCATAAGT
* * * * * *
57460155 GAACTTGGATTCAACTCAACGAGCTCGGGCGTTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
57460220 CGAGCTCGGATGCCTAGTTATATCTCTC
66 CGAGCTCGGATGCCTAGTTATATCTCTC
* *
57460248 GAACTCGGACTCAACTCAACAAGTTCGGACATTCGTATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
57460313 CGAGTTCGGATGC
66 CGAGCTCGGATGC
57460326 TCAACCATCC
Statistics
Matches: 69, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
93 69 1.00
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTATATCTCTC
Found at i:57460341 original size:46 final size:45
Alignment explanation
Indices: 57460198--57460341 Score: 109
Period size: 46 Copynumber: 3.1 Consensus size: 45
57460188 TGCATCCATA
* *
57460198 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGC-CTAGTTA-TATCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACCATCT
* * * * *
57460245 -CTCGAACTCGGACTCAACTCAACAAGTTCGGACATTCGT-ATCCAT-A
1 AGT-GAACTCGGACTCAACTCAACGAGTTCGG--ATGC-TCAACCATCT
57460291 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCAT-CT
57460337 AGTGA
1 AGTGA
57460342 CATGTCACTT
Statistics
Matches: 75, Mismatches: 12, Indels: 21
0.69 0.11 0.19
Matches are distributed among these distances:
43 1 0.01
44 8 0.11
46 33 0.44
47 29 0.39
49 4 0.05
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.24
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCT
Found at i:57462700 original size:29 final size:29
Alignment explanation
Indices: 57462661--57462748 Score: 97
Period size: 29 Copynumber: 3.0 Consensus size: 29
57462651 CAAAGATAAC
*
57462661 AAGAAAACCGAATAAAGAAATCCAAGATA
1 AAGAAACCCGAATAAAGAAATCCAAGATA
*
57462690 GAGAAACCCGAATAAAGAAATCC-AGAATA
1 AAGAAACCCGAATAAAGAAATCCAAG-ATA
* * * *
57462719 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGA-AACCCGAATAAAGAAATCCAAGATA
57462749 CGATACTATG
Statistics
Matches: 49, Mismatches: 7, Indels: 5
0.80 0.11 0.08
Matches are distributed among these distances:
28 2 0.04
29 27 0.55
30 18 0.37
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (29 bp):
AAGAAACCCGAATAAAGAAATCCAAGATA
Found at i:57462719 original size:15 final size:15
Alignment explanation
Indices: 57462661--57462739 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
57462651 CAAAGATAAC
*
57462661 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
57462675 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
57462690 GAGAAA-CCCGAATA
1 AAGAAATCCAGAATA
57462704 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
57462719 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
57462734 AAGAAA
1 AAGAAA
57462740 CCCAAGATAC
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
14 19 0.36
15 34 0.64
ACGTcount: A:0.58, C:0.14, G:0.18, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:57462748 original size:15 final size:15
Alignment explanation
Indices: 57462672--57462748 Score: 77
Period size: 15 Copynumber: 5.2 Consensus size: 15
57462662 AGAAAACCGA
57462672 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* * *
57462687 ATAGAGAAACCCGA-
1 ATAAAGAAATCCAAG
57462701 ATAAAGAAATCC-AG
1 ATAAAGAAATCCAAG
* *
57462715 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
57462731 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
57462746 ATA
1 ATA
57462749 CGATACTATG
Statistics
Matches: 49, Mismatches: 10, Indels: 6
0.75 0.15 0.09
Matches are distributed among these distances:
13 1 0.02
14 10 0.20
15 37 0.76
16 1 0.02
ACGTcount: A:0.56, C:0.16, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:57465786 original size:93 final size:93
Alignment explanation
Indices: 57465658--57465828 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
57465648 GCCCATAAGT
** * *
57465658 GAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
57465723 CGAGCTCGGATGCCTAGTTATATCTCTC
66 CGAGCTCGGATGCCTAGTTATATCTCTC
*
57465751 GAACTCGGACTCAACTCAACAAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
57465816 CGAGTTCGGATGC
66 CGAGCTCGGATGC
57465829 TCAACCATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTATATCTCTC
Found at i:57465825 original size:46 final size:46
Alignment explanation
Indices: 57465650--57465825 Score: 189
Period size: 46 Copynumber: 3.8 Consensus size: 46
57465640 TGTAACCCGC
* * *
57465650 CCATAAGTGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
57465696 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--ATGC-CTAGT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A-T
* ** * *
57465741 -TATATCTCTCGAACTCGGACTCAACTCAACAAGTTCGGACATTCGCAT
1 CCATA--AGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
57465789 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
57465826 TGCTCAACCA
Statistics
Matches: 108, Mismatches: 13, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
43 1 0.01
44 6 0.06
45 1 0.01
46 64 0.59
47 27 0.25
48 1 0.01
49 7 0.06
50 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:57467311 original size:27 final size:27
Alignment explanation
Indices: 57467281--57467338 Score: 73
Period size: 28 Copynumber: 2.1 Consensus size: 27
57467271 CCAAATAGTC
* * *
57467281 AAAA-CACAGAAATTTTAAAATTCGTTG
1 AAAACCACAGAAATCTCAAAAATC-TTG
57467308 AAAACCACAGAAATCTCAAAAATCTTG
1 AAAACCACAGAAATCTCAAAAATCTTG
57467335 AAAA
1 AAAA
57467339 TTGGGGCGTT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
27 11 0.41
28 16 0.59
ACGTcount: A:0.53, C:0.16, G:0.09, T:0.22
Consensus pattern (27 bp):
AAAACCACAGAAATCTCAAAAATCTTG
Found at i:57475500 original size:46 final size:48
Alignment explanation
Indices: 57475381--57475502 Score: 123
Period size: 46 Copynumber: 2.6 Consensus size: 48
57475371 TGAGAGCCAG
* * *
57475381 TGTAAGACCATG-TCTGGGACATGGCATCGACATTGAGACGAGTGCTAG
1 TGTAAGACCATGTTC-GGGACATGGCATCGGCATCGAGACGAGTGCTAA
* *
57475429 TGTAAGA-CATTTTTGGGACAT-GCATCGGC-TACGAGAC-A-TG-TCAA
1 TGTAAGACCATGTTCGGGACATGGCATCGGCAT-CGAGACGAGTGCT-AA
57475473 TGTAAGACCATGTTCGGGACATGGCATCGG
1 TGTAAGACCATGTTCGGGACATGGCATCGG
57475503 TACCTTACCC
Statistics
Matches: 62, Mismatches: 7, Indels: 12
0.77 0.09 0.15
Matches are distributed among these distances:
43 1 0.02
44 10 0.16
45 14 0.23
46 19 0.31
47 10 0.16
48 8 0.13
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.25
Consensus pattern (48 bp):
TGTAAGACCATGTTCGGGACATGGCATCGGCATCGAGACGAGTGCTAA
Found at i:57487181 original size:90 final size:90
Alignment explanation
Indices: 57487028--57487206 Score: 331
Period size: 90 Copynumber: 2.0 Consensus size: 90
57487018 TGTTTTCATT
*
57487028 GATTGTTATCCATCTAAGTGCTTGTAAGACTTGGGTCAAAAATATTTCTTATTGTTGGTTCGGCC
1 GATTGTTATCCATCTAAGTGCTTGTAAGACTTGGGTCAAAAATATTTCCTATTGTTGGTTCGGCC
57487093 TTTGCCTTAGCTAAACCTATCCATC
66 TTTGCCTTAGCTAAACCTATCCATC
* *
57487118 GATTGTTATCCATCTAAGTGCTTGTAAGACTTGGGTCAACAATCTTTCCTATTGTTGGTTCGGCC
1 GATTGTTATCCATCTAAGTGCTTGTAAGACTTGGGTCAAAAATATTTCCTATTGTTGGTTCGGCC
57487183 TTTGCCTTAGCTAAACCTATCCAT
66 TTTGCCTTAGCTAAACCTATCCAT
57487207 TCCTTCCCTA
Statistics
Matches: 86, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
90 86 1.00
ACGTcount: A:0.22, C:0.21, G:0.18, T:0.39
Consensus pattern (90 bp):
GATTGTTATCCATCTAAGTGCTTGTAAGACTTGGGTCAAAAATATTTCCTATTGTTGGTTCGGCC
TTTGCCTTAGCTAAACCTATCCATC
Found at i:57489306 original size:13 final size:13
Alignment explanation
Indices: 57489277--57489317 Score: 75
Period size: 13 Copynumber: 3.2 Consensus size: 13
57489267 GATGAATATG
57489277 ATACTCCTTTT-T
1 ATACTCCTTTTGT
57489289 ATACTCCTTTTGT
1 ATACTCCTTTTGT
57489302 ATACTCCTTTTGT
1 ATACTCCTTTTGT
57489315 ATA
1 ATA
57489318 AGGTCATAGA
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
12 11 0.39
13 17 0.61
ACGTcount: A:0.20, C:0.22, G:0.05, T:0.54
Consensus pattern (13 bp):
ATACTCCTTTTGT
Found at i:57490010 original size:21 final size:22
Alignment explanation
Indices: 57489971--57490011 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
57489961 GTTGAAATGT
57489971 CACACGGGCATGTTGCCCCTCC
1 CACACGGGCATGTTGCCCCTCC
*
57489993 CACATGGGCATG-TGCCCCT
1 CACACGGGCATGTTGCCCCT
57490012 GTGTTAAGAG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.15, C:0.41, G:0.24, T:0.20
Consensus pattern (22 bp):
CACACGGGCATGTTGCCCCTCC
Found at i:57494799 original size:85 final size:85
Alignment explanation
Indices: 57494664--57494824 Score: 200
Period size: 85 Copynumber: 1.9 Consensus size: 85
57494654 CTGAGATATC
* * * * *
57494664 GTGTAAGACCGTGTCTAGGACACAGGCCTCGATTGATATTTACGTATAAGACCATGTTTGGGACA
1 GTGTAAGACCCTGTCTAGGACACAGGCATCGATTGATATTTACATATAAGACCACGTTAGGGACA
57494729 TCGGCATTGTATCTGATTTT
66 TCGGCATTGTATCTGATTTT
* * *
57494749 GTGTAAGACCCTGTCTAGTACAGAGGCATCGATATTGA-A-TTACATGTAAGACCACGTTAGGGA
1 GTGTAAGACCCTGTCTAGGACACAGGCATCG--ATTGATATTTACATATAAGACCACGTTAGGGA
* *
57494812 CGTTGGCATTGTA
64 CATCGGCATTGTA
57494825 ATTGTTTGTG
Statistics
Matches: 64, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
85 58 0.91
86 1 0.02
87 5 0.08
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.30
Consensus pattern (85 bp):
GTGTAAGACCCTGTCTAGGACACAGGCATCGATTGATATTTACATATAAGACCACGTTAGGGACA
TCGGCATTGTATCTGATTTT
Found at i:57506612 original size:90 final size:90
Alignment explanation
Indices: 57506459--57506629 Score: 306
Period size: 90 Copynumber: 1.9 Consensus size: 90
57506449 TTCATTTATC
*
57506459 GTTATCCATCTAAGTGCTTATGAGACTTGAGTCAACAATCTTTCATATTGTTGGTTTGGCCTTTG
1 GTTATCCATCTAAGTGCTTATAAGACTTGAGTCAACAATCTTTCATATTGTTGGTTTGGCCTTTG
*
57506524 CCTTATCTAAACCTATCCATCGATT
66 CCTTAGCTAAACCTATCCATCGATT
* *
57506549 GTTATCCATCTAAGTGCTTGTAAGACTTGGGTCAACAATCTTTCATATTGTTGGTTTGGCCTTTG
1 GTTATCCATCTAAGTGCTTATAAGACTTGAGTCAACAATCTTTCATATTGTTGGTTTGGCCTTTG
57506614 CCTTAGCTAAACCTAT
66 CCTTAGCTAAACCTAT
57506630 ACATTCATTC
Statistics
Matches: 77, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
90 77 1.00
ACGTcount: A:0.23, C:0.20, G:0.17, T:0.40
Consensus pattern (90 bp):
GTTATCCATCTAAGTGCTTATAAGACTTGAGTCAACAATCTTTCATATTGTTGGTTTGGCCTTTG
CCTTAGCTAAACCTATCCATCGATT
Found at i:57520792 original size:7 final size:7
Alignment explanation
Indices: 57520780--57520804 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
57520770 AAATAAATAA
57520780 GTTTAGG
1 GTTTAGG
57520787 GTTTAGG
1 GTTTAGG
57520794 GTTTAGG
1 GTTTAGG
57520801 GTTT
1 GTTT
57520805 GTATGGTCAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.12, C:0.00, G:0.40, T:0.48
Consensus pattern (7 bp):
GTTTAGG
Found at i:57522071 original size:19 final size:20
Alignment explanation
Indices: 57522042--57522084 Score: 70
Period size: 19 Copynumber: 2.2 Consensus size: 20
57522032 CTCAAATAAA
57522042 AATGAAAATGTGTTGATTAG
1 AATGAAAATGTGTTGATTAG
*
57522062 AATG-AAATGTGTTGATTTG
1 AATGAAAATGTGTTGATTAG
57522081 AATG
1 AATG
57522085 TACATTGCAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 18 0.82
20 4 0.18
ACGTcount: A:0.37, C:0.00, G:0.26, T:0.37
Consensus pattern (20 bp):
AATGAAAATGTGTTGATTAG
Found at i:57526455 original size:46 final size:46
Alignment explanation
Indices: 57526405--57526580 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
57526395 TGGTTGAGCA
57526405 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
57526451 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
57526496 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
57526544 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
57526581 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:57526561 original size:93 final size:93
Alignment explanation
Indices: 57526402--57526573 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
57526392 GGATGGTTGA
* *
57526402 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
57526467 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
57526495 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
57526560 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
57526574 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:57534003 original size:46 final size:46
Alignment explanation
Indices: 57533953--57534128 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
57533943 TGGTTGAGCA
57533953 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
57533999 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
57534044 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
57534092 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
57534129 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:57534109 original size:93 final size:93
Alignment explanation
Indices: 57533950--57534121 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
57533940 GGATGGTTGA
* *
57533950 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
57534015 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
57534043 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
57534108 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
57534122 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:57547113 original size:12 final size:13
Alignment explanation
Indices: 57547085--57547117 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
57547075 TTATTTATTT
57547085 TTCTCCATCTACC
1 TTCTCCATCTACC
*
57547098 TTCTCC-TCTTCC
1 TTCTCCATCTACC
57547110 TTCTCCAT
1 TTCTCCAT
57547118 AGTCGAACCC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.09, C:0.45, G:0.00, T:0.45
Consensus pattern (13 bp):
TTCTCCATCTACC
Found at i:57548214 original size:28 final size:28
Alignment explanation
Indices: 57548183--57548247 Score: 103
Period size: 28 Copynumber: 2.3 Consensus size: 28
57548173 ATTTACTAGA
*
57548183 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATAACCATT
* *
57548211 ATACCCCTATGTGTGCAAAATAACCTTT
1 ATACCCCTATGTATGCAAAATAACCATT
57548239 ATACCCCTA
1 ATACCCCTA
57548248 GGGTTAATTT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.34, C:0.28, G:0.08, T:0.31
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATAACCATT
Found at i:57548454 original size:29 final size:28
Alignment explanation
Indices: 57548353--57548443 Score: 139
Period size: 28 Copynumber: 3.2 Consensus size: 28
57548343 AGGAAGCGTC
57548353 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAATTATCTGTT
*
57548381 CTGGTGGCCCTGCCACAAATTATCTGTT
1 CTGGTGGCACTGCCACAAATTATCTGTT
*
57548409 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCACAAATTATCTGT-T
57548438 CTGGTG
1 CTGGTG
57548444 ACTCTGTCAC
Statistics
Matches: 58, Mismatches: 3, Indels: 3
0.91 0.05 0.05
Matches are distributed among these distances:
28 51 0.88
29 7 0.12
ACGTcount: A:0.21, C:0.24, G:0.23, T:0.32
Consensus pattern (28 bp):
CTGGTGGCACTGCCACAAATTATCTGTT
Found at i:57548468 original size:56 final size:55
Alignment explanation
Indices: 57548353--57548468 Score: 137
Period size: 56 Copynumber: 2.1 Consensus size: 55
57548343 AGGAAGCGTC
* *
57548353 CTGGTGGCTATGCCACAAATTATCTGTTCTGGTGGCCCTGCCACAAATTATCTGTT
1 CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCAC-AATTATCTGTT
* * *
57548409 CTGGTGGC-ACTGCCACAAAATATCTGTATCTGGTGACTCTGTCAC-ATTTTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGT-TCTGGTGACCCTGCCACAATTATCTGT-T
57548465 CTGG
1 CTGG
57548469 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 5, Indels: 6
0.83 0.08 0.10
Matches are distributed among these distances:
55 9 0.17
56 29 0.56
57 14 0.27
ACGTcount: A:0.20, C:0.24, G:0.22, T:0.34
Consensus pattern (55 bp):
CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACAATTATCTGTT
Found at i:57560110 original size:50 final size:51
Alignment explanation
Indices: 57559989--57560128 Score: 219
Period size: 50 Copynumber: 2.8 Consensus size: 51
57559979 TGAGGTCGCA
*
57559989 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTTCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAACTTCGATCACG
* * ** *
57560040 TGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGAT-GGTTCGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAACTTCGATCACG
57560090 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
57560129 GCTTTGGCTA
Statistics
Matches: 80, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
50 45 0.56
51 35 0.44
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.29
Consensus pattern (51 bp):
TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAACTTCGATCACG
Found at i:57565394 original size:50 final size:51
Alignment explanation
Indices: 57565266--57565454 Score: 190
Period size: 50 Copynumber: 3.8 Consensus size: 51
57565256 TGTGAGGTCG
* * * *
57565266 CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTTCGATCA
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAACTTAGATCA
* ** *
57565317 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGAT-GGTTAGGTCA
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAACTTAGATCA
* * * * * *
57565367 CGTGTGTAGTACTAAGTGCAGGCTACTACGTATACCGGGTTA-TT-G--CG
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAACTTAGATCA
* * *
57565414 CATGTGTAGTACTAAGTGTAGGCTACTATGCGTACCAGATA
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
57565455 GCTTTGGTTA
Statistics
Matches: 114, Mismatches: 23, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
47 34 0.30
49 1 0.01
50 43 0.38
51 36 0.32
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (51 bp):
CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAACTTAGATCA
Found at i:57567469 original size:26 final size:27
Alignment explanation
Indices: 57567412--57567584 Score: 151
Period size: 26 Copynumber: 6.5 Consensus size: 27
57567402 AAATTGTACA
* *
57567412 GCACTAAGTGTGCGATTTGACTATGTT
1 GCACTAAGTGTGCGAATTGACTATGAT
*
57567439 GCACTAAGTGTGCGAAATGA-TATGAT
1 GCACTAAGTGTGCGAATTGACTATGAT
* **
57567465 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAATTGACTATGAT
* *
57567492 GCACTAAGTGTGAG-TTTGACTATG-T
1 GCACTAAGTGTGCGAATTGACTATGAT
* * *
57567517 AGCACTAAGTGTGCG-ATTTATTACG-T
1 -GCACTAAGTGTGCGAATTGACTATGAT
* *
57567543 AGCACTAAGTGTGCGAGTTGATTAT-AT
1 -GCACTAAGTGTGCGAATTGACTATGAT
*
57567570 AGCACTGAGTGTGCG
1 -GCACTAAGTGTGCG
57567585 GACTCAATAT
Statistics
Matches: 122, Mismatches: 20, Indels: 8
0.81 0.13 0.05
Matches are distributed among these distances:
26 67 0.55
27 55 0.45
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.31
Consensus pattern (27 bp):
GCACTAAGTGTGCGAATTGACTATGAT
Found at i:57567471 original size:53 final size:55
Alignment explanation
Indices: 57567411--57567584 Score: 189
Period size: 53 Copynumber: 3.3 Consensus size: 55
57567401 TAAATTGTAC
* *
57567411 AGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGA-TATGAT
1 AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAATTGACTATGAT
* * ** * *
57567465 -GCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGAG-TTTGACTATG-T
1 AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAATTGACTATGAT
* * * *
57567517 AGCACTAAGTGTGCGATTT-ATTACGTAGCACTAAGTGTGCGAGTTGATTAT-AT
1 AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAATTGACTATGAT
*
57567570 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
57567585 GACTCAATAT
Statistics
Matches: 99, Mismatches: 17, Indels: 9
0.79 0.14 0.07
Matches are distributed among these distances:
52 20 0.20
53 79 0.80
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (55 bp):
AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAATTGACTATGAT
Found at i:57567548 original size:79 final size:80
Alignment explanation
Indices: 57567412--57567563 Score: 211
Period size: 79 Copynumber: 1.9 Consensus size: 80
57567402 AAATTGTACA
* * *
57567412 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGATATGATGCACTAAGTGTG
1 GCACTAAGTGTGAGATTTGACTATGTAGCACTAAGTGTGCGAAATGATACGATGCACTAAGTGTG
57567477 CGAATTGACCATGCG
66 CGAATTGACCATGCG
* *
57567492 GCACTAAGTGTGAG-TTTGACTATGTAGCACTAAGTGTGCG-ATTTATTACG-TAGCACTAAGTG
1 GCACTAAGTGTGAGATTTGACTATGTAGCACTAAGTGTGCGAAATGA-TACGAT-GCACTAAGTG
*
57567554 TGCGAGTTGA
64 TGCGAATTGA
57567564 TTATATAGCA
Statistics
Matches: 64, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
78 4 0.06
79 47 0.73
80 13 0.20
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (80 bp):
GCACTAAGTGTGAGATTTGACTATGTAGCACTAAGTGTGCGAAATGATACGATGCACTAAGTGTG
CGAATTGACCATGCG
Found at i:57567575 original size:79 final size:80
Alignment explanation
Indices: 57567408--57567582 Score: 203
Period size: 79 Copynumber: 2.2 Consensus size: 80
57567398 GATTAAATTG
* * *
57567408 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGATATGATGCACTAAG
1 TACAGCACTAAGTGTGAGATTTGACTATGTAGCACTAAGTGTGCGAAATGATACGATGCACTAAG
57567473 TGTGCGAATTGACCA
66 TGTGCGAATTGACCA
* * * *
57567488 TGCGGCACTAAGTGTGAG-TTTGACTATGTAGCACTAAGTGTGCG-ATTTATTACG-TAGCACTA
1 TACAGCACTAAGTGTGAGATTTGACTATGTAGCACTAAGTGTGCGAAATGA-TACGAT-GCACTA
* **
57567550 AGTGTGCGAGTTGATTA
64 AGTGTGCGAATTGACCA
* *
57567567 TATAGCACTGAGTGTG
1 TACAGCACTAAGTGTG
57567583 CGGACTCAAT
Statistics
Matches: 79, Mismatches: 14, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
78 4 0.05
79 60 0.76
80 15 0.19
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.31
Consensus pattern (80 bp):
TACAGCACTAAGTGTGAGATTTGACTATGTAGCACTAAGTGTGCGAAATGATACGATGCACTAAG
TGTGCGAATTGACCA
Found at i:57580405 original size:27 final size:27
Alignment explanation
Indices: 57580374--57580551 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
57580364 TAAATTGTAC
57580374 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
57580401 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
57580427 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
57580455 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
57580483 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
57580510 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
57580537 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
57580552 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:57580488 original size:82 final size:81
Alignment explanation
Indices: 57580375--57580530 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
57580365 AAATTGTACA
* *
57580375 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
57580439 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
57580456 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
57580521 TGCGAGTTGA
65 TGCGAATTGA
57580531 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:57580542 original size:82 final size:81
Alignment explanation
Indices: 57580371--57580551 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
57580361 GATTAAATTG
* *
57580371 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
57580436 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
57580452 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
57580516 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
57580534 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
57580552 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:57599083 original size:26 final size:26
Alignment explanation
Indices: 57599022--57599087 Score: 78
Period size: 26 Copynumber: 2.5 Consensus size: 26
57599012 TTCGACCCAT
* *
57599022 AGCTCGTGTGAGCAGGCCCATTTTAC
1 AGCTAGTGTGAGCAGGCCCATTTCAC
* * *
57599048 AGGTAATGTGAGTAGGCCCATTTCAC
1 AGCTAGTGTGAGCAGGCCCATTTCAC
*
57599074 AGCTTGTGTGAGCA
1 AGCTAGTGTGAGCA
57599088 ACGATGTAAA
Statistics
Matches: 31, Mismatches: 9, Indels: 0
0.77 0.22 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (26 bp):
AGCTAGTGTGAGCAGGCCCATTTCAC
Found at i:57601905 original size:47 final size:47
Alignment explanation
Indices: 57601787--57602005 Score: 338
Period size: 47 Copynumber: 4.7 Consensus size: 47
57601777 GGATGGTTGA
* * * *
57601787 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--AT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAG
57601835 G--TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAG
57601880 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAG
57601927 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAG
*
57601974 GCATCCGAACTCGTTGAGTTGAGTCTGAGTTC
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTC
57602006 ACTCATGGAT
Statistics
Matches: 162, Mismatches: 5, Indels: 9
0.92 0.03 0.05
Matches are distributed among these distances:
43 6 0.04
45 4 0.02
46 29 0.18
47 122 0.75
48 1 0.01
ACGTcount: A:0.23, C:0.20, G:0.29, T:0.29
Consensus pattern (47 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:57601961 original size:94 final size:92
Alignment explanation
Indices: 57601787--57602052 Score: 356
Period size: 94 Copynumber: 2.8 Consensus size: 92
57601777 GGATGGTTGA
* *
57601787 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGA-GGATGCAAAGGTCCGAACTCGTTGAGT
57601852 TGAGTCCGAGTTCGTGAGATGTAACTAG
65 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
57601880 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA-GATGTAACTAGGCATCCGAACTCGTTG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGAGGATGCAA--AGG--TCCGAACTCGTTG
57601943 AGTTGAGTCCGAGTTCGTGAGATGTAACTAG
62 AGTTGAGTCCGAGTTCGTGAGATGTAACTAG
* * * * *** *
57601974 GCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTCATGGATACGAACACCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGA-GGATGCAAAGGTCCGAACTCGTTGAGT
57602039 TGAGTCCGAGTTCG
65 TGAGTCCGAGTTCG
57602053 CTTATGGGTG
Statistics
Matches: 152, Mismatches: 14, Indels: 14
0.84 0.08 0.08
Matches are distributed among these distances:
90 6 0.04
92 4 0.03
93 60 0.39
94 75 0.49
95 3 0.02
97 4 0.03
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.28
Consensus pattern (92 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGAGGATGCAAAGGTCCGAACTCGTTGAGTT
GAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:57605005 original size:15 final size:15
Alignment explanation
Indices: 57604981--57605017 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
57604971 TCTTGGGTTT
*
57604981 TTTATCCTGGATCTC
1 TTTATTCTGGATCTC
*
57604996 TTTATTCTGGATTTC
1 TTTATTCTGGATCTC
57605011 TTTATTC
1 TTTATTC
57605018 AGTTTTCTTG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.14, C:0.19, G:0.11, T:0.57
Consensus pattern (15 bp):
TTTATTCTGGATCTC
Found at i:57607447 original size:46 final size:46
Alignment explanation
Indices: 57607397--57607572 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 46
57607387 TGGTTGAGCA
*
57607397 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
57607443 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* *
57607490 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * *
57607536 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
57607573 GGGGTTACAT
Statistics
Matches: 109, Mismatches: 14, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 63 0.58
47 29 0.27
48 3 0.03
50 5 0.05
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:57607553 original size:93 final size:93
Alignment explanation
Indices: 57607394--57607565 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
57607384 GGATGGTTGA
* * *
57607394 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCGAACTCGTTGAGT
57607459 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
57607487 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCGAACTCGTTGAGT
57607552 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
57607566 CTTATGGGGG
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:57610482 original size:18 final size:18
Alignment explanation
Indices: 57610438--57610474 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
57610428 CGTGTGGGTA
57610438 GGCCGTGTCGTCACACAC
1 GGCCGTGTCGTCACACAC
57610456 GGCCGTGTCGTCACACAC
1 GGCCGTGTCGTCACACAC
57610474 G
1 G
57610475 CCTGTGTCCC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.16, C:0.38, G:0.30, T:0.16
Consensus pattern (18 bp):
GGCCGTGTCGTCACACAC
Found at i:57624603 original size:46 final size:46
Alignment explanation
Indices: 57624553--57624727 Score: 271
Period size: 46 Copynumber: 3.8 Consensus size: 46
57624543 TGGTTGAGCA
57624553 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
57624599 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
57624645 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATACGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
57624691 CCCGAGA-TCATTGAGTTGAGTCTGAGTTCGCTTATGG
1 TCCGA-ACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
57624728 GCGGGTTACA
Statistics
Matches: 120, Mismatches: 8, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
46 119 0.99
47 1 0.01
ACGTcount: A:0.22, C:0.19, G:0.28, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:57636507 original size:79 final size:81
Alignment explanation
Indices: 57636394--57636576 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
57636384 TACTCGTTCA
* *
57636394 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
57636457 ATTTAGTAAC-TCGCACC
65 ATATAGTAACTTAGCA-C
**
57636474 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
* *
57636537 TATGGTCACTTAGCAC
66 TATAGTAACTTAGCAC
*
57636553 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
57636577 CATCATTCGA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 59 0.66
80 28 0.31
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:57636576 original size:40 final size:40
Alignment explanation
Indices: 57636373--57636576 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
57636363 TCGAATTTAA
** *
57636373 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
57636413 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
57636453 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
57636492 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
57636532 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
57636572 CCGGA
1 CCGGA
57636577 CATCATTCGA
Statistics
Matches: 141, Mismatches: 16, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 94 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:57644586 original size:79 final size:81
Alignment explanation
Indices: 57644477--57644659 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
57644467 TACTCGTTCA
* *
57644477 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
57644540 ATTTAGTAAC-TCGCACC
65 ATATAGTAACTTAGCA-C
**
57644557 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
* *
57644620 TATGGTCACTTAGCAC
66 TATAGTAACTTAGCAC
*
57644636 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
57644660 CATCATTCGA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 59 0.66
80 28 0.31
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:57644659 original size:40 final size:40
Alignment explanation
Indices: 57644456--57644659 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
57644446 CGGAATTTAA
** *
57644456 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
57644496 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
57644536 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
57644575 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
57644615 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
57644655 CCGGA
1 CCGGA
57644660 CATCATTCGA
Statistics
Matches: 141, Mismatches: 16, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 94 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:57647237 original size:39 final size:39
Alignment explanation
Indices: 57647167--57647292 Score: 182
Period size: 39 Copynumber: 3.2 Consensus size: 39
57647157 CCAGCAATTT
* *
57647167 GCCTGCTAGGTATAAA-CTCGAACTTAACACCGGCACGAG
1 GCCTGCTAGGTATAAACCT-GAATTTATCACCGGCACGAG
*
57647206 GCCTACTAGGTATAAACCTGAATTTATCACCGGCACGAG
1 GCCTGCTAGGTATAAACCTGAATTTATCACCGGCACGAG
* **
57647245 GCCTGCTAGGTACAAACCTGAATTTATCACCGGCATAAG
1 GCCTGCTAGGTATAAACCTGAATTTATCACCGGCACGAG
57647284 GCCTGCTAG
1 GCCTGCTAG
57647293 ACATTAAGTT
Statistics
Matches: 79, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
39 77 0.97
40 2 0.03
ACGTcount: A:0.29, C:0.27, G:0.22, T:0.21
Consensus pattern (39 bp):
GCCTGCTAGGTATAAACCTGAATTTATCACCGGCACGAG
Found at i:57650893 original size:40 final size:40
Alignment explanation
Indices: 57650849--57651040 Score: 221
Period size: 40 Copynumber: 4.8 Consensus size: 40
57650839 GGATATAGCT
* *
57650849 ACTCGCTCAAATGCCTTCGGGACATAGCCCGGTTATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
*
57650889 ACTCGCACAAATGCCTTCGGGACTTAACCCGGATT-TAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG-TTATAGTA
* * *
57650929 ACTCGCTCCAATGCCTTCGGG-CTTAGCCCGG-AATTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTA
* * *
57650968 ACTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATAGTC
1 ACTCGCACAAATGCCTTCGGGA-CTTAGCCCGGTTATAGTA
* *
57651008 ACTTAGCACAAAAGCCTTCGGGACTTAGCCCGG
1 AC-TCGCACAAATGCCTTCGGGACTTAGCCCGG
57651041 ATATCATTCG
Statistics
Matches: 129, Mismatches: 15, Indels: 15
0.81 0.09 0.09
Matches are distributed among these distances:
38 2 0.02
39 30 0.23
40 68 0.53
41 26 0.20
42 3 0.02
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
Found at i:57650967 original size:79 final size:79
Alignment explanation
Indices: 57650823--57651041 Score: 257
Period size: 79 Copynumber: 2.7 Consensus size: 79
57650813 GAATCACATA
* * * *
57650823 CCTTCGGAATTTAACCGGATATAGCTACTCGCTCAAATGCCTTCGGGACATAGCCCGG-TTATAG
1 CCTTCGGGACTTAACCGGATATAG-TACTCGCTCAAATGCCTTCGGGACTTAGCCCGGAATATAG
57650887 TAACTCGCACAAATG
65 TAACTCGCACAAATG
* *
57650902 CCTTCGGGACTTAACCCGGATTTAGTAACTCGCTCCAATGCCTTCGGG-CTTAGCCCGGAAT-TA
1 CCTTCGGGACTTAA-CCGGATATAGT-ACTCGCTCAAATGCCTTCGGGACTTAGCCCGGAATATA
57650965 GTAACTCGCACAAATG
64 GTAACTCGCACAAATG
* * * *
57650981 CCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCACAAAAGCCTTCGGGACTTAGCCCGGA
1 CCTTCGGGA-CTTA-ACCGGATATAGT-AC-TCGCTCAAATGCCTTCGGGACTTAGCCCGGA
57651042 TATCATTCGA
Statistics
Matches: 120, Mismatches: 13, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
78 3 0.03
79 61 0.51
80 45 0.38
81 11 0.09
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (79 bp):
CCTTCGGGACTTAACCGGATATAGTACTCGCTCAAATGCCTTCGGGACTTAGCCCGGAATATAGT
AACTCGCACAAATG
Done.