Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 181 of 349
Found at i:58662848 original size:29 final size:29
Alignment explanation
Indices: 58662815--58662871 Score: 78
Period size: 29 Copynumber: 2.0 Consensus size: 29
58662805 GCATGAATAC
* * *
58662815 AAGGTGATTTGGGCCTAGTGGGCCATATA
1 AAGGTGATTTGGGCATAATGGACCATATA
*
58662844 AAGGTGATTTTGGCATAATGGACCATAT
1 AAGGTGATTTGGGCATAATGGACCATAT
58662872 GAATATGAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.28, C:0.12, G:0.30, T:0.30
Consensus pattern (29 bp):
AAGGTGATTTGGGCATAATGGACCATATA
Found at i:58662893 original size:29 final size:29
Alignment explanation
Indices: 58662861--58662958 Score: 121
Period size: 29 Copynumber: 3.4 Consensus size: 29
58662851 TTTTGGCATA
*
58662861 ATGGACCATATGAATATGAATTGGGCCTG
1 ATGGGCCATATGAATATGAATTGGGCCTG
58662890 ATGGGCCGA-ATGAATATGAATTGGGCCTG
1 ATGGGCC-ATATGAATATGAATTGGGCCTG
* **
58662919 ATGGGCCACATG-A-ATGAGATTGGGCCAA
1 ATGGGCCATATGAATATGA-ATTGGGCCTG
58662947 ATGGGCCATATG
1 ATGGGCCATATG
58662959 CATTTATGTA
Statistics
Matches: 62, Mismatches: 4, Indels: 7
0.85 0.05 0.10
Matches are distributed among these distances:
27 4 0.06
28 21 0.34
29 36 0.58
30 1 0.02
ACGTcount: A:0.30, C:0.15, G:0.32, T:0.23
Consensus pattern (29 bp):
ATGGGCCATATGAATATGAATTGGGCCTG
Found at i:58665858 original size:16 final size:16
Alignment explanation
Indices: 58665837--58665868 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
58665827 GTTGTAACGC
*
58665837 CCCAAAAATCTTGAAA
1 CCCAAAAATCCTGAAA
58665853 CCCAAAAATCCTGAAA
1 CCCAAAAATCCTGAAA
58665869 TCCTGAACTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.50, C:0.28, G:0.06, T:0.16
Consensus pattern (16 bp):
CCCAAAAATCCTGAAA
Found at i:58667127 original size:16 final size:16
Alignment explanation
Indices: 58667105--58667149 Score: 63
Period size: 16 Copynumber: 2.8 Consensus size: 16
58667095 CGACAAAAAT
58667105 CGAAAAGCCGAAATGC
1 CGAAAAGCCGAAATGC
* *
58667121 TGAAAAGCAGAAATGC
1 CGAAAAGCCGAAATGC
*
58667137 CGAAAAGTCGAAA
1 CGAAAAGCCGAAA
58667150 GTTTGGCTAC
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.49, C:0.18, G:0.24, T:0.09
Consensus pattern (16 bp):
CGAAAAGCCGAAATGC
Found at i:58667440 original size:29 final size:29
Alignment explanation
Indices: 58667399--58667477 Score: 97
Period size: 29 Copynumber: 2.7 Consensus size: 29
58667389 GATAAAGGAT
58667399 TTGGGCCTAATGGGCCATATGAATATGAA
1 TTGGGCCTAATGGGCCATATGAATATGAA
** * * *
58667428 TTGGGTTTGATGGGTCGA-ATGAATGTGAA
1 TTGGGCCTAATGGG-CCATATGAATATGAA
58667457 TTGGGCCTAATGGGCCATATG
1 TTGGGCCTAATGGGCCATATG
58667478 GATGAGATTG
Statistics
Matches: 39, Mismatches: 9, Indels: 4
0.75 0.17 0.08
Matches are distributed among these distances:
28 2 0.05
29 35 0.90
30 2 0.05
ACGTcount: A:0.25, C:0.11, G:0.33, T:0.30
Consensus pattern (29 bp):
TTGGGCCTAATGGGCCATATGAATATGAA
Found at i:58669597 original size:37 final size:37
Alignment explanation
Indices: 58669538--58669646 Score: 182
Period size: 37 Copynumber: 2.9 Consensus size: 37
58669528 AGCTCAGACG
* * *
58669538 AAATCTCCACACGAAGTTATCGGGTCTCACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
58669575 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
58669612 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
58669647 ATATATTTCC
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 68 1.00
ACGTcount: A:0.27, C:0.32, G:0.19, T:0.22
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:58669965 original size:50 final size:48
Alignment explanation
Indices: 58669796--58669977 Score: 276
Period size: 48 Copynumber: 3.8 Consensus size: 48
58669786 CATCGCCTAC
*
58669796 ATATTTCACACTATCCATTCGGCTTTACCACATATACATATCTCATAT
1 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATAT
* *
58669844 ATATTTCAAACTAGCCATTCGGCTTTACCACATATACATATCTCACAT
1 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATAT
58669892 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATAT
1 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTC--ATAT
* * *
58669942 ATATTTCACA-TTGACCGTTCGGCTTTATCACATATA
1 ATATTTCACACTAG-CCATTCGGCTTTACCACATATA
58669978 TGCATGTTCA
Statistics
Matches: 123, Mismatches: 8, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
48 88 0.72
49 2 0.02
50 33 0.27
ACGTcount: A:0.31, C:0.26, G:0.07, T:0.36
Consensus pattern (48 bp):
ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATAT
Found at i:58670017 original size:47 final size:47
Alignment explanation
Indices: 58669947--58670136 Score: 281
Period size: 47 Copynumber: 4.0 Consensus size: 47
58669937 TATATATATT
* * * *
58669947 TCACATTGACCGTTCGGCTTTATCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* *
58669994 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
58670041 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * * **
58670088 TCACATTGGCCGTTCGGCCTTATCTCATATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
58670135 TC
1 TC
58670137 GCATGAAATC
Statistics
Matches: 130, Mismatches: 13, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 130 1.00
ACGTcount: A:0.25, C:0.28, G:0.12, T:0.34
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:58670068 original size:22 final size:22
Alignment explanation
Indices: 58669993--58670068 Score: 59
Period size: 22 Copynumber: 3.3 Consensus size: 22
58669983 GTTCATATTC
58669993 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* *
58670015 ATCACACATAT-G-CATGCTC-ACATT
1 AT--CACAT-TGGCCAT--TCGGCCTT
58670039 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
58670062 ATCACAT
1 ATCACAT
58670069 ATATGCATGT
Statistics
Matches: 41, Mismatches: 4, Indels: 18
0.65 0.06 0.29
Matches are distributed among these distances:
22 12 0.29
23 12 0.29
24 12 0.29
25 5 0.12
ACGTcount: A:0.25, C:0.32, G:0.13, T:0.30
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:58676432 original size:19 final size:19
Alignment explanation
Indices: 58676405--58676443 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
58676395 CCGTTTAAAT
*
58676405 AGTACTTCATCCA-TATAAC
1 AGTAATTCAT-CAGTATAAC
58676424 AGTAATTCATCAGTATAAC
1 AGTAATTCATCAGTATAAC
58676443 A
1 A
58676444 TATAGCTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 2 0.11
19 16 0.89
ACGTcount: A:0.41, C:0.21, G:0.08, T:0.31
Consensus pattern (19 bp):
AGTAATTCATCAGTATAAC
Found at i:58687338 original size:50 final size:50
Alignment explanation
Indices: 58687253--58687392 Score: 117
Period size: 50 Copynumber: 2.8 Consensus size: 50
58687243 ATTATATTGA
* * * * *
58687253 TCTTCGTGAGCTTCCCAAATTA-GGCTTTTCGTGAGCTTCCTG-TTAAATTGT
1 TCTTTGTGAACTTCCC-AATTACGGC-TCTCATGAGCTTCCTGATTAAA-AGT
* * *
58687304 CTCTTTGTGAGCTTCCCGA-TA-GGCTCATCATGAGCTTTCTGATTAAAAGT
1 -TCTTTGTGAACTTCCCAATTACGGCTC-TCATGAGCTTCCTGATTAAAAGT
* *
58687354 TCTTTTTGAACTTCTCAATTACGGCTCTCATGAGCTTCC
1 TCTTTGTGAACTTCCCAATTACGGCTCTCATGAGCTTCC
58687393 CATTATATAG
Statistics
Matches: 73, Mismatches: 11, Indels: 10
0.78 0.12 0.11
Matches are distributed among these distances:
49 15 0.21
50 32 0.44
51 11 0.15
52 15 0.21
ACGTcount: A:0.19, C:0.24, G:0.18, T:0.39
Consensus pattern (50 bp):
TCTTTGTGAACTTCCCAATTACGGCTCTCATGAGCTTCCTGATTAAAAGT
Found at i:58687445 original size:23 final size:24
Alignment explanation
Indices: 58687414--58687459 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
58687404 CCAGATAAGC
58687414 TTCTCGATA-GGCTCTTTGTGAGG
1 TTCTCGATATGGCTCTTTGTGAGG
*
58687437 TTCTTGATATGGCTCTTTGTGAG
1 TTCTCGATATGGCTCTTTGTGAG
58687460 CTACCTGTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
23 8 0.38
24 13 0.62
ACGTcount: A:0.13, C:0.15, G:0.28, T:0.43
Consensus pattern (24 bp):
TTCTCGATATGGCTCTTTGTGAGG
Found at i:58699779 original size:28 final size:28
Alignment explanation
Indices: 58699747--58699814 Score: 127
Period size: 28 Copynumber: 2.4 Consensus size: 28
58699737 AAAACGAAGC
58699747 ACATGCCCGTGTCCTTCACACGGCCTAG
1 ACATGCCCGTGTCCTTCACACGGCCTAG
*
58699775 ACATGACCGTGTCCTTCACACGGCCTAG
1 ACATGCCCGTGTCCTTCACACGGCCTAG
58699803 ACATGCCCGTGT
1 ACATGCCCGTGT
58699815 GGTTGCCCGT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 38 1.00
ACGTcount: A:0.19, C:0.37, G:0.22, T:0.22
Consensus pattern (28 bp):
ACATGCCCGTGTCCTTCACACGGCCTAG
Found at i:58705617 original size:41 final size:41
Alignment explanation
Indices: 58705572--58705785 Score: 259
Period size: 41 Copynumber: 5.2 Consensus size: 41
58705562 AGATTATTGT
* *
58705572 TGAATTGCACATACATGCTCCTGTTTGTACTTCGATACCCC
1 TGAATTGCACATACGTGCTCCTGTTTGTACTTTGATACCCC
* * **
58705613 TGAATTGCACATACATGCTCCTTTTTGTACTTCAATACCCC
1 TGAATTGCACATACGTGCTCCTGTTTGTACTTTGATACCCC
* * * * * *
58705654 TAAATTGCAAATATGTGCCCCTATTTGTACTTTGATACTCC
1 TGAATTGCACATACGTGCTCCTGTTTGTACTTTGATACCCC
* * *
58705695 TGAATTGCACATACGTGCTCTTGTTTGTACTTTGGTACCCT
1 TGAATTGCACATACGTGCTCCTGTTTGTACTTTGATACCCC
* * *
58705736 TGAATTTCACATACGTGCCCCTGTTTGTACTTTGGTACCCC
1 TGAATTGCACATACGTGCTCCTGTTTGTACTTTGATACCCC
58705777 TGAA-TGCAC
1 TGAATTGCAC
58705786 TTTTTTGCCC
Statistics
Matches: 148, Mismatches: 25, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
40 4 0.03
41 144 0.97
ACGTcount: A:0.22, C:0.26, G:0.15, T:0.37
Consensus pattern (41 bp):
TGAATTGCACATACGTGCTCCTGTTTGTACTTTGATACCCC
Found at i:58707157 original size:49 final size:50
Alignment explanation
Indices: 58707079--58707439 Score: 229
Period size: 46 Copynumber: 7.6 Consensus size: 50
58707069 GTATGATGCT
58707079 GATGCCATGTCCCAGACATGGTCTTACACTGGCTATCA-A-AATCAAG-GCTC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTATCAGATAATC--GTGC-C
* * * * *
58707129 -ATGCCATGTCCCAAACATGGTCTGACACTAGCTCTCAGATATTCGTGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTATCAGATAATCGTGCC
* *
58707178 GATGCCATGTCCCAGACATGGTCTTACACTGAC-ACCTC-TAT-A-CGTGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTA--TCAGATAATCGTGCC
* * * *
58707226 GATGCCATGTCCCAGACAAGGTCTTACACT-G--A-CACAT-CTCATAGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTATCAGATAATCGT-GCC
* * * * *
58707272 AATG-CATGTCCTAGACAT-GTCTTACACTGGCT-T-ACAT-CTCGAGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTATCAGATAATCG-TGCC
* * * * * *
58707318 GATG-CATGTCCTAGACA-GGTCTTACACTAGCTCTC-G-T-CTCAATGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTATCAGATAATC-GTGCC
* *
58707364 GATGCGATGTCCCAGACATGGTCTTACACTGGCTCTC--ATAAT-GTGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTATCAGATAATCGT-GCC
58707412 GATG-CATGTCCCAGACAT-GTCTTACACT
1 GATGCCATGTCCCAGACATGGTCTTACACT
58707440 AGCACACAAA
Statistics
Matches: 253, Mismatches: 35, Indels: 50
0.75 0.10 0.15
Matches are distributed among these distances:
43 1 0.00
44 12 0.05
45 15 0.06
46 66 0.26
47 26 0.10
48 59 0.23
49 36 0.14
50 33 0.13
51 5 0.02
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.26
Consensus pattern (50 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGGCTATCAGATAATCGTGCC
Found at i:58707396 original size:94 final size:93
Alignment explanation
Indices: 58707074--58707442 Score: 326
Period size: 94 Copynumber: 3.9 Consensus size: 93
58707064 ATAGGGTATG
* * *
58707074 ATGCTGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCAAAATCAAGGCTC-ATGCCATGT
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTA-C-ATATCGAGGC-CGATGCCATGT
* * *
58707138 CCCAAACATGGTCTGACACTAGCTCTCAGATATTC
63 CCCAGACA-GGTCTTACACTAGCTCTC-G-T-CTC
* * * *
58707173 GTGCCGATGCCATGTCCCAGACATGGTCTTACACTGAC-ACCTCTATACG-TGCCGATGCCATGT
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTA-C-ATAT-CGAGGCCGATGCCATGT
* * *
58707236 CCCAGACAAGGTCTTACACT-G-ACACATCTC
63 CCCAGAC-AGGTCTTACACTAGCTCTCGTCTC
* * *
58707266 ATAGCCAATG-CATGTCCTAGACAT-GTCTTACACTGGCTTACATCTCGAGGCCGATG-CATGTC
1 AT-GCCGATGCCATGTCCCAGACATGGTCTTACACTGGC-TACATATCGAGGCCGATGCCATGTC
*
58707328 CTAGACAGGTCTTACACTAGCTCTCGTCTC
64 CCAGACAGGTCTTACACTAGCTCTCGTCTC
* * * *
58707358 AATGCTGATGCGATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT-GTGGCCGATG-CATGT
1 -ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCT-ACAT-ATCGAGGCCGATGCCATGT
*
58707421 CCCAGACATGTCTTACACTAGC
63 CCCAGACAGGTCTTACACTAGC
58707443 ACACAAATAA
Statistics
Matches: 221, Mismatches: 35, Indels: 33
0.76 0.12 0.11
Matches are distributed among these distances:
90 12 0.05
91 14 0.06
92 32 0.14
93 32 0.14
94 58 0.26
95 1 0.00
96 2 0.01
97 2 0.01
98 31 0.14
99 37 0.17
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.26
Consensus pattern (93 bp):
ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTACATATCGAGGCCGATGCCATGTCCC
AGACAGGTCTTACACTAGCTCTCGTCTC
Found at i:58707787 original size:76 final size:76
Alignment explanation
Indices: 58707661--58707813 Score: 297
Period size: 76 Copynumber: 2.0 Consensus size: 76
58707651 GGCTTAGTCG
58707661 ACTTATTTTACTTTTCCCCAATCTAGGCCCAGATTTTGTAATTCTTGATCTAAAATGATAGAAAT
1 ACTTATTTTACTTTTCCCCAATCTAGGCCCAGATTTTGTAATTCTTGATCTAAAATGATAGAAAT
58707726 TCATTCATTTC
66 TCATTCATTTC
*
58707737 ACTTATTTTACTTTTCCCCAATCTAGGCCCAGATTTTGTAATTCTTGATCTAAAATGATAGAAGT
1 ACTTATTTTACTTTTCCCCAATCTAGGCCCAGATTTTGTAATTCTTGATCTAAAATGATAGAAAT
58707802 TCATTCATTTC
66 TCATTCATTTC
58707813 A
1 A
58707814 TCAGCATATT
Statistics
Matches: 76, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
76 76 1.00
ACGTcount: A:0.29, C:0.20, G:0.10, T:0.42
Consensus pattern (76 bp):
ACTTATTTTACTTTTCCCCAATCTAGGCCCAGATTTTGTAATTCTTGATCTAAAATGATAGAAAT
TCATTCATTTC
Found at i:58714660 original size:49 final size:47
Alignment explanation
Indices: 58714541--58714672 Score: 158
Period size: 47 Copynumber: 2.8 Consensus size: 47
58714531 AGGGTATGAT
* *
58714541 GCCGATGCCATGTCCCAGACATGGTCTTTCACTGGCTCAACCATCAA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGACTCAACCATCAA
* * * *
58714588 GTCGATGCCATGTCCCAGGCATGGTCTTACACTGACT-ATCGCAATCGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGACTCAAC-C-ATC-AA
* *
58714637 GCCGACGCCATGTCCTAGACATGGTCTTACACTGAC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGAC
58714673 ACCTCTATAA
Statistics
Matches: 72, Mismatches: 10, Indels: 4
0.84 0.12 0.05
Matches are distributed among these distances:
46 2 0.03
47 34 0.47
48 3 0.04
49 33 0.46
ACGTcount: A:0.23, C:0.32, G:0.22, T:0.23
Consensus pattern (47 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGACTCAACCATCAA
Found at i:58714779 original size:46 final size:47
Alignment explanation
Indices: 58714729--58714837 Score: 132
Period size: 46 Copynumber: 2.3 Consensus size: 47
58714719 GATGAGGCAA
* * *
58714729 ACATGTCTTACACTGGCT-TACATCTCGAGGCCAATG-CATGTCTCAG
1 ACATGTCTTACACTAGCTCT-CATCTCAAGGCCAATGCCATGTCCCAG
* * *
58714775 ACATGTCTTGCACTAGCTCTCATCTCAATGCCGATGCCATGTCCCAG
1 ACATGTCTTACACTAGCTCTCATCTCAAGGCCAATGCCATGTCCCAG
*
58714822 ACATGTTTTACACTAG
1 ACATGTCTTACACTAG
58714838 TACACAAATA
Statistics
Matches: 53, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
46 29 0.55
47 24 0.45
ACGTcount: A:0.24, C:0.29, G:0.17, T:0.29
Consensus pattern (47 bp):
ACATGTCTTACACTAGCTCTCATCTCAAGGCCAATGCCATGTCCCAG
Found at i:58716571 original size:24 final size:26
Alignment explanation
Indices: 58716525--58716572 Score: 73
Period size: 24 Copynumber: 1.9 Consensus size: 26
58716515 TTAAGGGAAG
58716525 ATATGTATGTGAATGAATGTATGATA
1 ATATGTATGTGAATGAATGTATGATA
*
58716551 ATATG-ATTTGAATG-ATGTATGA
1 ATATGTATGTGAATGAATGTATGA
58716573 AATGTATGTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 8 0.38
25 8 0.38
26 5 0.24
ACGTcount: A:0.38, C:0.00, G:0.23, T:0.40
Consensus pattern (26 bp):
ATATGTATGTGAATGAATGTATGATA
Found at i:58723027 original size:49 final size:49
Alignment explanation
Indices: 58722950--58723080 Score: 181
Period size: 49 Copynumber: 2.7 Consensus size: 49
58722940 TGAAAAAGTG
* * *
58722950 AGATGGGCCATTGGCAGGGCATGTTAGTTGCTATCCAGATTGACAAATA
1 AGATAGGCCACTGGTAGGGCATGTTAGTTGCTATCCAGATTGACAAATA
*
58722999 AGATAGGCCACTGGTAGGGCATGTTAGTTGCTATCCAGATTGACAGATA
1 AGATAGGCCACTGGTAGGGCATGTTAGTTGCTATCCAGATTGACAAATA
* * * * *
58723048 TGATTGGCCACTAGTAAGGCACGTTAGTTGCTA
1 AGATAGGCCACTGGTAGGGCATGTTAGTTGCTA
58723081 ACTAGAATGG
Statistics
Matches: 73, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
49 73 1.00
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.27
Consensus pattern (49 bp):
AGATAGGCCACTGGTAGGGCATGTTAGTTGCTATCCAGATTGACAAATA
Found at i:58723097 original size:49 final size:48
Alignment explanation
Indices: 58722965--58723132 Score: 165
Period size: 49 Copynumber: 3.5 Consensus size: 48
58722955 GGCCATTGGC
* * * * * *
58722965 AGGGCATGTTAGTTGCTATCCAGATTGACAAATAAGATAGGCCACTGGT
1 AGGGCATGTTAGTTGCTAACCAGAATGACAGATATGCT-GGCCACTAGT
* * *
58723014 AGGGCATGTTAGTTGCTATCCAGATTGACAGATATGATTGGCCACTAGT
1 AGGGCATGTTAGTTGCTAACCAGAATGACAGATATG-CTGGCCACTAGT
* * * * * *
58723063 AAGGCACGTTAGTTGCTAACTAGAATGGCGGATATGCTGGGCACTAGT
1 AGGGCATGTTAGTTGCTAACCAGAATGACAGATATGCTGGCCACTAGT
* *
58723111 AGGGCATGTTAATTGTTAACCA
1 AGGGCATGTTAGTTGCTAACCA
58723133 TTGTAGAGTA
Statistics
Matches: 100, Mismatches: 18, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
48 27 0.27
49 72 0.72
50 1 0.01
ACGTcount: A:0.29, C:0.16, G:0.27, T:0.28
Consensus pattern (48 bp):
AGGGCATGTTAGTTGCTAACCAGAATGACAGATATGCTGGCCACTAGT
Found at i:58723340 original size:13 final size:13
Alignment explanation
Indices: 58723324--58723349 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
58723314 TTATGTAGTT
58723324 TATTGCATGGTAA
1 TATTGCATGGTAA
58723337 TATTGCATGGTAA
1 TATTGCATGGTAA
58723350 GTGTTAAATC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.08, G:0.23, T:0.38
Consensus pattern (13 bp):
TATTGCATGGTAA
Found at i:58727018 original size:25 final size:25
Alignment explanation
Indices: 58726990--58727059 Score: 122
Period size: 25 Copynumber: 2.8 Consensus size: 25
58726980 CTCTTTTAAT
58726990 AACTGGGGCAAAGCCCTTTTCAGTA
1 AACTGGGGCAAAGCCCTTTTCAGTA
*
58727015 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCAGTA
*
58727040 AACTGGGGCATAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
58727060 AGCACTTCCT
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 43 1.00
ACGTcount: A:0.24, C:0.24, G:0.26, T:0.26
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCAGTA
Found at i:58727291 original size:27 final size:27
Alignment explanation
Indices: 58727261--58727475 Score: 126
Period size: 27 Copynumber: 9.0 Consensus size: 27
58727251 AGGGGCAAAT
* * *
58727261 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
58727288 GGTAATCCTACCCTACAAGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
58727315 GGT-ATTCCTACCCTACAAGGGTATTTC
1 GGTAATT-CTACCCTACAAGGGTATTTC
* *
58727342 AGTAATTCTACCCTTC-A-GG------
1 GGTAATTCTACCCTACAAGGGTATTTC
*
58727361 GGT-ATTTTACCCTACAAGGGTAT---
1 GGTAATTCTACCCTACAAGGGTATTTC
58727384 ------TCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
58727405 GGTAATTCTACCCTAC-A-GG------
1 GGTAATTCTACCCTACAAGGGTATTTC
*
58727424 GGT-ATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
58727450 GATAATTCTACCCTACAGGGGTATTT
1 GGTAATTCTACCCTACAAGGGTATTT
58727476 TGATATTTTA
Statistics
Matches: 148, Mismatches: 15, Indels: 50
0.69 0.07 0.23
Matches are distributed among these distances:
18 39 0.26
19 6 0.04
20 4 0.03
25 4 0.03
26 6 0.04
27 86 0.58
28 3 0.02
ACGTcount: A:0.25, C:0.24, G:0.19, T:0.33
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:58727373 original size:18 final size:18
Alignment explanation
Indices: 58727350--58727403 Score: 81
Period size: 18 Copynumber: 3.0 Consensus size: 18
58727340 TCAGTAATTC
* *
58727350 TACCCTTCAGGGGTATTT
1 TACCCTACAAGGGTATTT
*
58727368 TACCCTACAAGGGTATTC
1 TACCCTACAAGGGTATTT
58727386 TACCCTACAAGGGTATTT
1 TACCCTACAAGGGTATTT
58727404 CGGTAATTCT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 32 1.00
ACGTcount: A:0.24, C:0.24, G:0.19, T:0.33
Consensus pattern (18 bp):
TACCCTACAAGGGTATTT
Found at i:58727415 original size:63 final size:64
Alignment explanation
Indices: 58727315--58727447 Score: 223
Period size: 63 Copynumber: 2.1 Consensus size: 64
58727305 AGGGTATTTT
* *
58727315 GGTATTCCTACCCTACAAGGGTATTTCAGTAATTCTACCCTTCAGGGGTATTTTACCCTACAAG
1 GGTATTCCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTCTACCCTACAAG
* *
58727379 GGTATT-CTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTCTACCCTACAGG
1 GGTATTCCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTCTACCCTACAAG
58727442 GGTATT
1 GGTATT
58727448 TCGATAATTC
Statistics
Matches: 65, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
63 59 0.91
64 6 0.09
ACGTcount: A:0.24, C:0.24, G:0.20, T:0.32
Consensus pattern (64 bp):
GGTATTCCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTCTACCCTACAAG
Found at i:58727417 original size:45 final size:45
Alignment explanation
Indices: 58727368--58727474 Score: 187
Period size: 45 Copynumber: 2.4 Consensus size: 45
58727358 AGGGGTATTT
* *
58727368 TACCCTACAAGGGTATTCTACCCTACAAGGGTATTTCGGTAATTC
1 TACCCTACAGGGGTATTCTACCCTACAAGGGTATTTCGATAATTC
*
58727413 TACCCTACAGGGGTATTCTACCCTACAGGGGTATTTCGATAATTC
1 TACCCTACAGGGGTATTCTACCCTACAAGGGTATTTCGATAATTC
58727458 TACCCTACAGGGGTATT
1 TACCCTACAGGGGTATT
58727475 TTGATATTTT
Statistics
Matches: 59, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 59 1.00
ACGTcount: A:0.25, C:0.24, G:0.20, T:0.31
Consensus pattern (45 bp):
TACCCTACAGGGGTATTCTACCCTACAAGGGTATTTCGATAATTC
Found at i:58727432 original size:18 final size:18
Alignment explanation
Indices: 58727409--58727447 Score: 78
Period size: 18 Copynumber: 2.2 Consensus size: 18
58727399 TATTTCGGTA
58727409 ATTCTACCCTACAGGGGT
1 ATTCTACCCTACAGGGGT
58727427 ATTCTACCCTACAGGGGT
1 ATTCTACCCTACAGGGGT
58727445 ATT
1 ATT
58727448 TCGATAATTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.23, C:0.26, G:0.21, T:0.31
Consensus pattern (18 bp):
ATTCTACCCTACAGGGGT
Found at i:58727518 original size:27 final size:27
Alignment explanation
Indices: 58727470--58727633 Score: 152
Period size: 27 Copynumber: 6.1 Consensus size: 27
58727460 CCCTACAGGG
*
58727470 GTATTTTGAT-ATTTTACAAATCGAGA
1 GTATTTTGGTAATTTTACAAATCGAGA
* * *
58727496 GTATTTTGATAATTTCACAAATC-AGGG
1 GTATTTTGGTAATTTTACAAATCGA-GA
** * *
58727523 GTATTTTGGTAATTTTACAAGCCAAGG
1 GTATTTTGGTAATTTTACAAATCGAGA
**
58727550 GTATTTTGGTAATTTTACTGATCGAGA
1 GTATTTTGGTAATTTTACAAATCGAGA
* * * *
58727577 GTATTTTGGTAATTTTGCAAACCAAGG
1 GTATTTTGGTAATTTTACAAATCGAGA
* **
58727604 GTATTTTAGTAATTTTTTAAATCGAGA
1 GTATTTTGGTAATTTTACAAATCGAGA
58727631 GTA
1 GTA
58727634 AAACGGCAAT
Statistics
Matches: 111, Mismatches: 24, Indels: 5
0.79 0.17 0.04
Matches are distributed among these distances:
26 11 0.10
27 99 0.89
28 1 0.01
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.41
Consensus pattern (27 bp):
GTATTTTGGTAATTTTACAAATCGAGA
Found at i:58727563 original size:54 final size:54
Alignment explanation
Indices: 58727465--58727618 Score: 177
Period size: 54 Copynumber: 2.9 Consensus size: 54
58727455 TTCTACCCTA
* * * * *
58727465 CAGGGGTATTTTGAT-ATTTTACAAATCGAGAGTATTTTGATAATTTCACAAAT
1 CAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTCACAAAT
* * **
58727518 CAGGGGTATTTTGGTAATTTTACAAGCCAAGGGTATTTTGGTAATTTTACTGAT
1 CAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTCACAAAT
* * *
58727572 C-GAGAGTATTTTGGTAATTTTGCAAACCAAGGGTATTTTAGTAATTT
1 CAG-GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTT
58727619 TTTAAATCGA
Statistics
Matches: 86, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
53 15 0.17
54 71 0.83
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.40
Consensus pattern (54 bp):
CAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTCACAAAT
Found at i:58727590 original size:81 final size:80
Alignment explanation
Indices: 58727468--58727619 Score: 214
Period size: 81 Copynumber: 1.9 Consensus size: 80
58727458 TACCCTACAG
* * *
58727468 GGGTATTTTGATATTTTACAAATCGAGAGTATTTTGATAATTTCACAAATCAGGGGTATTTTGGT
1 GGGTATTTTGATATTTTACAAATCGAGAGTATTTTGATAATTTCACAAACCAAGGGTATTTTAGT
58727533 AATTTTACAAGCCAA
66 AATTTTACAAGCCAA
* ** * **
58727548 GGGTATTTTGGTAATTTTACTGATCGAGAGTATTTTGGTAATTTTGCAAACCAAGGGTATTTTAG
1 GGGTATTTTGAT-ATTTTACAAATCGAGAGTATTTTGATAATTTCACAAACCAAGGGTATTTTAG
58727613 TAATTTT
65 TAATTTT
58727620 TTAAATCGAG
Statistics
Matches: 62, Mismatches: 9, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
80 11 0.18
81 51 0.82
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.41
Consensus pattern (80 bp):
GGGTATTTTGATATTTTACAAATCGAGAGTATTTTGATAATTTCACAAACCAAGGGTATTTTAGT
AATTTTACAAGCCAA
Found at i:58727644 original size:27 final size:27
Alignment explanation
Indices: 58727612--58727767 Score: 226
Period size: 27 Copynumber: 5.8 Consensus size: 27
58727602 GGGTATTTTA
* * *
58727612 GTAATTTTTTAAATCGAGAGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
* *
58727639 GCAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
*
58727666 ATAATTCTATAAATC-AGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
58727692 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
58727719 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
*
58727746 GTAATT-TCGTAAATCGAGGGTA
1 GTAATTCT-ATAAATCGAGGGTA
58727768 CTTTGGTAAT
Statistics
Matches: 118, Mismatches: 9, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
26 26 0.22
27 92 0.78
ACGTcount: A:0.40, C:0.11, G:0.22, T:0.28
Consensus pattern (27 bp):
GTAATTCTATAAATCGAGGGTAAAACG
Found at i:58727705 original size:53 final size:54
Alignment explanation
Indices: 58727621--58727767 Score: 235
Period size: 53 Copynumber: 2.7 Consensus size: 54
58727611 AGTAATTTTT
* *
58727621 TAAATCGAGAGTAAAACGGCAATTCTGTAAATCGAGGGTAAAACGATAATTCTA
1 TAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGATAATTCTA
* *
58727675 TAAATC-AGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTA
1 TAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGATAATTCTA
58727728 TAAATCGAGGGTAAAACGGTAATT-TCGTAAATCGAGGGTA
1 TAAATCGAGGGTAAAACGGTAATTCT-GTAAATCGAGGGTA
58727768 CTTTGGTAAT
Statistics
Matches: 86, Mismatches: 5, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
53 50 0.58
54 36 0.42
ACGTcount: A:0.41, C:0.12, G:0.22, T:0.25
Consensus pattern (54 bp):
TAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGATAATTCTA
Found at i:58727759 original size:80 final size:81
Alignment explanation
Indices: 58727612--58727767 Score: 226
Period size: 80 Copynumber: 1.9 Consensus size: 81
58727602 GGGTATTTTA
* * *
58727612 GTAATTTTTTAAATCGAGAGTAAAACGGCAATTCTGTAAATCGAGGGTAAAACGATAATTCTATA
1 GTAATTCTATAAATCGAGAGTAAAACGGCAATTCTATAAATCGAGGGTAAAACGATAATTCTATA
58727677 AATC-AGGGTAAAACG
66 AATCGAGGGTAAAACG
* * * *
58727692 GTAATTCTATAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGGTAATT-TCGT
1 GTAATTCTATAAATCGAGAGTAAAACGGCAATTCTATAAATCGAGGGTAAAACGATAATTCT-AT
58727756 AAATCGAGGGTA
65 AAATCGAGGGTA
58727768 CTTTGGTAAT
Statistics
Matches: 67, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
79 1 0.01
80 60 0.90
81 6 0.09
ACGTcount: A:0.40, C:0.11, G:0.22, T:0.28
Consensus pattern (81 bp):
GTAATTCTATAAATCGAGAGTAAAACGGCAATTCTATAAATCGAGGGTAAAACGATAATTCTATA
AATCGAGGGTAAAACG
Found at i:58729375 original size:20 final size:20
Alignment explanation
Indices: 58729338--58729374 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
58729328 TACTAAACCG
*
58729338 AAAACTTAGGAAACTTTTAC
1 AAAACTTAGAAAACTTTTAC
58729358 AAAACTTAGAAAA-TTTT
1 AAAACTTAGAAAACTTTT
58729375 TGCTATGATC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
19 4 0.25
20 12 0.75
ACGTcount: A:0.49, C:0.11, G:0.08, T:0.32
Consensus pattern (20 bp):
AAAACTTAGAAAACTTTTAC
Found at i:58739336 original size:23 final size:24
Alignment explanation
Indices: 58739286--58739339 Score: 67
Period size: 24 Copynumber: 2.3 Consensus size: 24
58739276 TACAGTCGTA
*
58739286 AGAGCTTACTATTTTCAGCTCATC
1 AGAGCTTACCATTTTCAGCTCATC
*
58739310 AGAGCTTACCGTTTT-AGCTCAGT-
1 AGAGCTTACCATTTTCAGCTCA-TC
58739333 AGAGCTT
1 AGAGCTT
58739340 GGTGTCTATC
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
23 13 0.48
24 14 0.52
ACGTcount: A:0.24, C:0.22, G:0.19, T:0.35
Consensus pattern (24 bp):
AGAGCTTACCATTTTCAGCTCATC
Found at i:58740563 original size:13 final size:13
Alignment explanation
Indices: 58740530--58740567 Score: 53
Period size: 12 Copynumber: 3.1 Consensus size: 13
58740520 TTGGCATGAC
*
58740530 CTAG-CACACGGC
1 CTAGACACACGGG
58740542 CTA-ACACACGGG
1 CTAGACACACGGG
58740554 CTAGACACACGGG
1 CTAGACACACGGG
58740567 C
1 C
58740568 CTGTGGTTGG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
12 13 0.57
13 10 0.43
ACGTcount: A:0.29, C:0.37, G:0.26, T:0.08
Consensus pattern (13 bp):
CTAGACACACGGG
Found at i:58743120 original size:34 final size:34
Alignment explanation
Indices: 58743073--58743143 Score: 115
Period size: 34 Copynumber: 2.1 Consensus size: 34
58743063 ATGATGAGAT
*
58743073 TGTGTATTAATTACAGACAGCTAAATAAGGTGAC
1 TGTGTATTAATTACAGACAACTAAATAAGGTGAC
* *
58743107 TGTGTATTGATTACAGACAACTGAATAAGGTGAC
1 TGTGTATTAATTACAGACAACTAAATAAGGTGAC
58743141 TGT
1 TGT
58743144 AAAGAACAAA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.35, C:0.11, G:0.23, T:0.31
Consensus pattern (34 bp):
TGTGTATTAATTACAGACAACTAAATAAGGTGAC
Found at i:58745671 original size:30 final size:30
Alignment explanation
Indices: 58745637--58745697 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
58745627 TTCCCGAGCC
*
58745637 TAGGGGAAAAAGTGTAAATATGCAAAAGTT
1 TAGGGGAAAAAGTGTAAATATGAAAAAGTT
* * * *
58745667 TAGGGGCAAAATTGTAATTTTGAAAAAGTT
1 TAGGGGAAAAAGTGTAAATATGAAAAAGTT
58745697 T
1 T
58745698 GAGTTAAGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.43, C:0.03, G:0.25, T:0.30
Consensus pattern (30 bp):
TAGGGGAAAAAGTGTAAATATGAAAAAGTT
Found at i:58749729 original size:25 final size:26
Alignment explanation
Indices: 58749659--58749737 Score: 83
Period size: 26 Copynumber: 3.1 Consensus size: 26
58749649 AAGATTGTAT
* *
58749659 GAGCTTACTGATATATCAGCTCGTAA
1 GAGCTTACTGATACATCAGCTCGGAA
* *
58749685 GAGCTTACTG-TCCATCAGCTCAGGAG
1 GAGCTTACTGATACATCAGCTC-GGAA
*
58749711 GAGCTTACTGAT-CAT-AGCTCGAAA
1 GAGCTTACTGATACATCAGCTCGGAA
58749735 GAG
1 GAG
58749738 TGGAAAAGAT
Statistics
Matches: 45, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
24 5 0.11
25 14 0.31
26 25 0.56
27 1 0.02
ACGTcount: A:0.29, C:0.22, G:0.24, T:0.25
Consensus pattern (26 bp):
GAGCTTACTGATACATCAGCTCGGAA
Found at i:58753458 original size:48 final size:48
Alignment explanation
Indices: 58753406--58753610 Score: 206
Period size: 48 Copynumber: 4.4 Consensus size: 48
58753396 CTTTAACCTG
* *
58753406 GACATGGTCTTACATTGGATCACATATCGATGCTAATGCCATGTCCCA
1 GACATGGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCA
* * * * *
58753454 GACATGGTATTACGTGGGATCATAGATCGATGCCAATGCCATGTCCTA
1 GACATGGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCA
* *
58753502 GACATGGTCTTACATGGGATCACATATTGATGCCGAT---A-G-CCCA
1 GACATGGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCA
* ** * ** *
58753545 G-CTATGGTCTTACACGAAATTACATATCGATGCCAAAACCATGTCCTA
1 GAC-ATGGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCA
*
58753593 GACATGGTCTTGCATGGG
1 GACATGGTCTTACATGGG
58753611 CTCGTACATA
Statistics
Matches: 124, Mismatches: 26, Indels: 14
0.76 0.16 0.09
Matches are distributed among these distances:
42 1 0.01
43 31 0.25
44 1 0.01
45 1 0.01
46 1 0.01
47 1 0.01
48 87 0.70
49 1 0.01
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.27
Consensus pattern (48 bp):
GACATGGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCA
Found at i:58765775 original size:56 final size:56
Alignment explanation
Indices: 58765678--58765803 Score: 182
Period size: 55 Copynumber: 2.2 Consensus size: 56
58765668 CATGAGATTG
* * *
58765678 GCACTAAGTGTGCGGGTTTAAATTGTACAGCACTAAGTGTGCGAGTTTGATTATGTA
1 GCACTAAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCGAG-TTGATTATATA
* *
58765735 GCACTAAGTGTGCGAGTTT-GATTATATAGCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCGAGTTGATTATATA
*
58765790 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
58765804 GACTTAATAT
Statistics
Matches: 63, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
55 23 0.37
56 22 0.35
57 18 0.29
ACGTcount: A:0.26, C:0.13, G:0.29, T:0.33
Consensus pattern (56 bp):
GCACTAAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCGAGTTGATTATATA
Found at i:58765790 original size:27 final size:28
Alignment explanation
Indices: 58765678--58765803 Score: 182
Period size: 28 Copynumber: 4.5 Consensus size: 28
58765668 CATGAGATTG
* * * *
58765678 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
*
58765707 GCACTAAGTGTGCGAGTTTGATTATGTA
1 GCACTAAGTGTGCGAGTTTGATTATATA
58765735 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
58765763 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
58765790 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
58765804 GACTTAATAT
Statistics
Matches: 90, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
27 24 0.27
28 48 0.53
29 18 0.20
ACGTcount: A:0.26, C:0.13, G:0.29, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:58765814 original size:27 final size:27
Alignment explanation
Indices: 58765706--58765816 Score: 116
Period size: 28 Copynumber: 4.0 Consensus size: 27
58765696 TAAATTGTAC
* * *
58765706 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
58765734 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
58765762 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
58765789 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
58765816 A
1 A
58765817 CTTTTGAATC
Statistics
Matches: 77, Mismatches: 5, Indels: 3
0.91 0.06 0.04
Matches are distributed among these distances:
27 30 0.39
28 47 0.61
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:58770178 original size:40 final size:39
Alignment explanation
Indices: 58770134--58770316 Score: 267
Period size: 39 Copynumber: 4.7 Consensus size: 39
58770124 GCCACTAGCT
* *
58770134 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTGACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TATAATAACTCGCA
58770174 CAAATGCCTTCGGGACTTAGCCCGGTATAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTATAATAACTCGCA
*
58770213 TAAATGCCTTCGGGACTTAGCCCGGTATAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTATAATAACTCGCA
* *
58770252 TAAATGCCTTCGGGACTTAGCCCGGTATAATAATTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTATAATAACTCGCA
* * ** *
58770291 CGAGTGTGTTCAGGACTTAGCCCGGT
1 CAAATGCCTTCGGGACTTAGCCCGGT
58770317 TATCAACCGA
Statistics
Matches: 133, Mismatches: 10, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 108 0.81
40 25 0.19
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGGTATAATAACTCGCA
Found at i:58771645 original size:19 final size:19
Alignment explanation
Indices: 58771621--58771657 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
58771611 TGCCTTGATT
58771621 AAGATAACCTAGCAATGAA
1 AAGATAACCTAGCAATGAA
*
58771640 AAGATAACTTAGCAATGA
1 AAGATAACCTAGCAATGA
58771658 TCTCAAAAAC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.51, C:0.14, G:0.16, T:0.19
Consensus pattern (19 bp):
AAGATAACCTAGCAATGAA
Found at i:58772236 original size:24 final size:24
Alignment explanation
Indices: 58772192--58772254 Score: 72
Period size: 24 Copynumber: 2.6 Consensus size: 24
58772182 GTATATGTAT
* *
58772192 GCTCATACAAGTTGAGAATCGATAA
1 GCTCATACGAGTTG-CAATCGATAA
** *
58772217 GCTTTTACGAGTTGCAATCGGTAA
1 GCTCATACGAGTTGCAATCGATAA
58772241 GCTCATACGAGTTG
1 GCTCATACGAGTTG
58772255 AGAATTGGTA
Statistics
Matches: 31, Mismatches: 7, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
24 20 0.65
25 11 0.35
ACGTcount: A:0.30, C:0.17, G:0.24, T:0.29
Consensus pattern (24 bp):
GCTCATACGAGTTGCAATCGATAA
Found at i:58772269 original size:25 final size:25
Alignment explanation
Indices: 58772192--58772269 Score: 95
Period size: 25 Copynumber: 3.2 Consensus size: 25
58772182 GTATATGTAT
* *
58772192 GCTCATACAAGTTGAGAATCGATAA
1 GCTCATACGAGTTGAGAATCGGTAA
** *
58772217 GCTTTTACGAGTTG-CAATCGGTAA
1 GCTCATACGAGTTGAGAATCGGTAA
*
58772241 GCTCATACGAGTTGAGAATTGGTAA
1 GCTCATACGAGTTGAGAATCGGTAA
58772266 GCTC
1 GCTC
58772270 TCACGAGCTG
Statistics
Matches: 43, Mismatches: 9, Indels: 2
0.80 0.17 0.04
Matches are distributed among these distances:
24 20 0.47
25 23 0.53
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.28
Consensus pattern (25 bp):
GCTCATACGAGTTGAGAATCGGTAA
Found at i:58775450 original size:25 final size:25
Alignment explanation
Indices: 58775416--58775466 Score: 77
Period size: 25 Copynumber: 2.0 Consensus size: 25
58775406 CCCTTATAAT
*
58775416 GTGAAAATGACCT-TTTTACCCCTAG
1 GTGAAAATGA-CTATTATACCCCTAG
58775441 GTGAAAATGACTATTATACCCCTAG
1 GTGAAAATGACTATTATACCCCTAG
58775466 G
1 G
58775467 GTTATGTTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
24 2 0.08
25 22 0.92
ACGTcount: A:0.31, C:0.22, G:0.18, T:0.29
Consensus pattern (25 bp):
GTGAAAATGACTATTATACCCCTAG
Found at i:58775525 original size:10 final size:10
Alignment explanation
Indices: 58775510--58775544 Score: 61
Period size: 10 Copynumber: 3.4 Consensus size: 10
58775500 TTTGTACATA
58775510 ATATGCCATG
1 ATATGCCATG
58775520 ATATGCACATG
1 ATATGC-CATG
58775531 ATATGCCATG
1 ATATGCCATG
58775541 ATAT
1 ATAT
58775545 ATACATATAT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 14 0.58
11 10 0.42
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.31
Consensus pattern (10 bp):
ATATGCCATG
Found at i:58775529 original size:21 final size:21
Alignment explanation
Indices: 58775505--58775544 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
58775495 ACTGATTTGT
58775505 ACATAATATGCCATGATATGC
1 ACATAATATGCCATGATATGC
*
58775526 ACATGATATGCCATGATAT
1 ACATAATATGCCATGATAT
58775545 ATACATATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.38, C:0.17, G:0.15, T:0.30
Consensus pattern (21 bp):
ACATAATATGCCATGATATGC
Found at i:58775550 original size:21 final size:20
Alignment explanation
Indices: 58775504--58775556 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 20
58775494 TACTGATTTG
*
58775504 TACATAATATGCCATGATATG
1 TACAT-ATATGCCATGATATA
*
58775525 CACATGATATGCCATGATATA
1 TACAT-ATATGCCATGATATA
58775546 TACATATATGC
1 TACATATATGC
58775557 ATGGGTTGGG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
20 6 0.21
21 22 0.79
ACGTcount: A:0.38, C:0.17, G:0.13, T:0.32
Consensus pattern (20 bp):
TACATATATGCCATGATATA
Found at i:58775624 original size:25 final size:25
Alignment explanation
Indices: 58775590--58775659 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 25
58775580 GAGGAAGTGC
* *
58775590 AAAATGGCTTTGCCCGAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
*
58775615 AAAAGGGCTTTGCCCCAGTTTACCT
1 AAAAGGGCTTTGCCCCAGTTTACCG
*
58775640 AAAAGGGCTTTGCCCTAGTT
1 AAAAGGGCTTTGCCCCAGTT
58775660 ATTAAAAGAG
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 41 1.00
ACGTcount: A:0.24, C:0.24, G:0.23, T:0.29
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCG
Found at i:58775953 original size:29 final size:30
Alignment explanation
Indices: 58775880--58775961 Score: 107
Period size: 29 Copynumber: 2.7 Consensus size: 30
58775870 CGTTTACAGT
58775880 AAAGGCTTCGGCCCAGTGATATGAATTATGA
1 AAAGGCTTCGGCCCAGT-ATATGAATTATGA
*
58775911 AAAGGCTTCGGCCCAGTA-ATCG-TTTAATG-
1 AAAGGCTTCGGCCCAGTATAT-GAATT-ATGA
58775940 AAAGGCTTCGGCCCAGTATATG
1 AAAGGCTTCGGCCCAGTATATG
58775962 TTGAGACTGA
Statistics
Matches: 47, Mismatches: 1, Indels: 8
0.84 0.02 0.14
Matches are distributed among these distances:
29 23 0.49
30 7 0.15
31 17 0.36
ACGTcount: A:0.29, C:0.20, G:0.26, T:0.26
Consensus pattern (30 bp):
AAAGGCTTCGGCCCAGTATATGAATTATGA
Found at i:58781801 original size:30 final size:30
Alignment explanation
Indices: 58781745--58781801 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
58781735 GAGACGATAC
*
58781745 TTTAAAAGTATTTCCTGCTATTTAGTATAG
1 TTTAAAAGTATTTCCTGCTATGTAGTATAG
* *
58781775 TTTAAAAGTATTTCTTGTTATGTAGTA
1 TTTAAAAGTATTTCCTGCTATGTAGTA
58781802 GTGCATGAGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.30, C:0.07, G:0.14, T:0.49
Consensus pattern (30 bp):
TTTAAAAGTATTTCCTGCTATGTAGTATAG
Found at i:58790171 original size:29 final size:29
Alignment explanation
Indices: 58790108--58790176 Score: 86
Period size: 29 Copynumber: 2.4 Consensus size: 29
58790098 TAATCAACCG
*
58790108 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTACTGCCATGCACTTTAAACT
* **
58790137 CACACACTTACTGCCATGCA-TTTCAAGTT
1 CGCACACTTACTGCCATGCACTTT-AAACT
58790166 CGCACACTTAC
1 CGCACACTTAC
58790177 CTTTTCCGCT
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.33, G:0.12, T:0.28
Consensus pattern (29 bp):
CGCACACTTACTGCCATGCACTTTAAACT
Found at i:58790288 original size:174 final size:174
Alignment explanation
Indices: 58789997--58790320 Score: 585
Period size: 174 Copynumber: 1.9 Consensus size: 174
58789987 AACTCAAGGT
* *
58789997 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
*
58790062 GAAAATATAAATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
66 GAAAATATAAATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGC
58790127 ACTTTAAACTCACACACTTACTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTACTGCCATGCATTTCAAGTTCGCAC
*
58790171 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAGGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
* *
58790236 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGT
66 GAAAATATAAATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGC
*
58790301 ACTTTAAACTCGCACACTTA
131 ACTTTAAACTCACACACTTA
58790321 GTGCTATACA
Statistics
Matches: 143, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
174 143 1.00
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.30
Consensus pattern (174 bp):
ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
GAAAATATAAATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGC
ACTTTAAACTCACACACTTACTGCCATGCATTTCAAGTTCGCAC
Found at i:58790316 original size:29 final size:29
Alignment explanation
Indices: 58790277--58790354 Score: 102
Period size: 29 Copynumber: 2.7 Consensus size: 29
58790267 CTTAATAATC
** *
58790277 AACCACGCACACTTAGTGCCATGTACTTTA
1 AACC-CGCACACTTAGTGCCATACAATTTA
* *
58790307 AACTCGCACACTTAGTGCTATACAATTTA
1 AACCCGCACACTTAGTGCCATACAATTTA
58790336 AACCCGCACACTTAGTGCC
1 AACCCGCACACTTAGTGCC
58790355 GATCTCATGA
Statistics
Matches: 41, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
29 38 0.93
30 3 0.07
ACGTcount: A:0.31, C:0.31, G:0.13, T:0.26
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATACAATTTA
Found at i:58798328 original size:29 final size:29
Alignment explanation
Indices: 58798265--58798332 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
58798255 TAATCAACCG
58798265 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
58798294 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
58798323 CGCACACTTA
1 CGCACACTTA
58798333 CCTTTTCCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:58798445 original size:174 final size:174
Alignment explanation
Indices: 58798154--58798481 Score: 602
Period size: 174 Copynumber: 1.9 Consensus size: 174
58798144 AACTCAAGGT
* *
58798154 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
*
58798219 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGC
58798284 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
*
58798328 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAGGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
*
58798393 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGC
*
58798458 ACTTTAAACTCGCACACTTAGTGC
131 ACTTTAAACTCACACACTTAGTGC
58798482 TGTACAATTT
Statistics
Matches: 148, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
174 148 1.00
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.30
Consensus pattern (174 bp):
ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGC
ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
Found at i:58798473 original size:29 final size:30
Alignment explanation
Indices: 58798434--58798512 Score: 110
Period size: 29 Copynumber: 2.7 Consensus size: 30
58798424 CTTAATAATC
58798434 AACCACGCACACTTAGTGCCATGTAC-TTTA
1 AACC-CGCACACTTAGTGCCATGTACATTTA
*
58798464 AACTCGCACACTTAGTG-C-TGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATTTA
58798493 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
58798513 ATCTCATGAC
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 33 0.77
30 4 0.09
ACGTcount: A:0.30, C:0.30, G:0.14, T:0.25
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATTTA
Found at i:58801316 original size:40 final size:40
Alignment explanation
Indices: 58801246--58801423 Score: 254
Period size: 40 Copynumber: 4.5 Consensus size: 40
58801236 AAACCGAGTA
* **
58801246 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGTTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
58801285 CCTTTGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
58801325 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
58801365 CCTTCGGGGCTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
58801405 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
58801424 TTATCATCCG
Statistics
Matches: 127, Mismatches: 9, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
39 14 0.11
40 113 0.89
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:58809404 original size:40 final size:40
Alignment explanation
Indices: 58809327--58809544 Score: 307
Period size: 40 Copynumber: 5.5 Consensus size: 40
58809317 AAACAGAGTA
* * *
58809327 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCACTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
58809366 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
58809406 CCTTCAGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
58809446 CCTTCGGGACTTAGCCCAGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * *
58809486 CCTTCGGGGCTTAGCTCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
58809526 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
58809545 TTATCATCCG
Statistics
Matches: 161, Mismatches: 15, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
39 15 0.09
40 146 0.91
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:58813725 original size:12 final size:12
Alignment explanation
Indices: 58813708--58813734 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
58813698 TTCTCCGAAG
58813708 CTTTTCTTTTCT
1 CTTTTCTTTTCT
58813720 CTTTTCTTTTCT
1 CTTTTCTTTTCT
58813732 CTT
1 CTT
58813735 CTCCATAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (12 bp):
CTTTTCTTTTCT
Found at i:58815464 original size:28 final size:28
Alignment explanation
Indices: 58815433--58815514 Score: 74
Period size: 33 Copynumber: 2.8 Consensus size: 28
58815423 TATTGGGCGT
58815433 AGGCCCATACTGTTACTGCATAGGGCTA
1 AGGCCCATACTGTTACTGCATAGGGCTA
* * *
58815461 AGGCCCAAACTGTACTGATACTGAATAGGGCTC
1 AGGCCC--A---TACTGTTACTGCATAGGGCTA
* *
58815494 AGGCCCAGACTATTACTGCAT
1 AGGCCCATACTGTTACTGCAT
58815515 GCACTATTTA
Statistics
Matches: 42, Mismatches: 7, Indels: 10
0.71 0.12 0.17
Matches are distributed among these distances:
28 16 0.38
30 1 0.02
31 1 0.02
33 24 0.57
ACGTcount: A:0.28, C:0.26, G:0.23, T:0.23
Consensus pattern (28 bp):
AGGCCCATACTGTTACTGCATAGGGCTA
Found at i:58817987 original size:42 final size:42
Alignment explanation
Indices: 58817941--58818029 Score: 110
Period size: 42 Copynumber: 2.1 Consensus size: 42
58817931 TCGTTTACTT
* *
58817941 GATGCCATAAT-CC-AACTATGGTCTTACACGAAGTCTCATATC
1 GATGCCAT-ATCCCTAAC-ATGGTCTTACACGAAATCACATATC
* *
58817983 GATGCCATGTCCCTGACATGGTCTTACACGAAATCACATATC
1 GATGCCATATCCCTAACATGGTCTTACACGAAATCACATATC
58818025 GATGC
1 GATGC
58818030 TAACGCCATA
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
41 1 0.02
42 38 0.93
43 2 0.05
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (42 bp):
GATGCCATATCCCTAACATGGTCTTACACGAAATCACATATC
Found at i:58818057 original size:48 final size:48
Alignment explanation
Indices: 58817984--58818308 Score: 436
Period size: 48 Copynumber: 6.8 Consensus size: 48
58817974 TCTCATATCG
* * ** *
58817984 ATGCCATGTCCCTGACATGGTCTTACACGAAATCACATATCGATGCTA
1 ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCA
* * * *
58818032 ACGCCATATCCCAGATATGGTCTTACATAGGATCACATATCGATGCCA
1 ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCA
* *
58818080 ATGCCATGTCCCAAACATGGTCTTACATGGGATCACAGATCGATGCCA
1 ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCA
* *
58818128 ATGCTATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCTA
1 ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCA
* * *
58818176 ATGCCATATCCCAGACATGGTTTTACATGGGATCACATATCAATGCCA
1 ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCA
* * * *
58818224 ATGCCATGTCTCAAATATGGTCTTACATGGGATCATATATCGATGCCA
1 ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCA
* *
58818272 ATGCCATTTCCCTA-ACTTGGTCTTACATGGGATCACA
1 ATGCCATGTCCC-AGACATGGTCTTACATGGGATCACA
58818309 ATACCATAGG
Statistics
Matches: 240, Mismatches: 36, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
48 239 1.00
49 1 0.00
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.28
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCA
Found at i:58818196 original size:144 final size:144
Alignment explanation
Indices: 58817984--58818308 Score: 490
Period size: 144 Copynumber: 2.3 Consensus size: 144
58817974 TCTCATATCG
* * ** *
58817984 ATGCCATGTCCCTGACATGGTCTTACACGAAATCACATATCGATGCTAACGCCATATCCCAGATA
1 ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCTAACGCCATATCCCAGACA
*
58818049 TGGTCTTACATAGGATCACATATCGATGCCAATGCCATGTCCCAAACATGGTCTTACATGGGATC
66 TGGTCTTACATAGGATCACATATCAATGCCAATGCCATGTCCCAAACATGGTCTTACATGGGATC
58818114 ACAGATCGATGCCA
131 ACAGATCGATGCCA
* *
58818128 ATGCTATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCTAATGCCATATCCCAGACA
1 ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCTAACGCCATATCCCAGACA
* * * *
58818193 TGGTTTTACATGGGATCACATATCAATGCCAATGCCATGTCTCAAATATGGTCTTACATGGGATC
66 TGGTCTTACATAGGATCACATATCAATGCCAATGCCATGTCCCAAACATGGTCTTACATGGGATC
* *
58818258 ATATATCGATGCCA
131 ACAGATCGATGCCA
* *
58818272 ATGCCATTTCCCTA-ACTTGGTCTTACATGGGATCACA
1 ATGCCATGTCCC-AGACATGGTCTTACATGGGATCACA
58818309 ATACCATAGG
Statistics
Matches: 163, Mismatches: 17, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
144 162 0.99
145 1 0.01
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.28
Consensus pattern (144 bp):
ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCTAACGCCATATCCCAGACA
TGGTCTTACATAGGATCACATATCAATGCCAATGCCATGTCCCAAACATGGTCTTACATGGGATC
ACAGATCGATGCCA
Found at i:58831967 original size:44 final size:45
Alignment explanation
Indices: 58831904--58832436 Score: 667
Period size: 44 Copynumber: 12.1 Consensus size: 45
58831894 CAGGAACACC
* * * *
58831904 AATCTGT-TATTTTCTATCTGCTCTCTGCCAATATAGAGATGCCA
1 AATCTGTCTATCTTCGATCTGCTCTCTGCCAATACAGAGACGCCA
* *
58831948 AATCTGTC-ATCTTCGATCTGCTCTCTGTCAATACAGAGATGCCA
1 AATCTGTCTATCTTCGATCTGCTCTCTGCCAATACAGAGACGCCA
* * * **
58831992 AATCTG-CTATCTTTGATCTGCTCTCCGCCAATATAGAGGTGCCA
1 AATCTGTCTATCTTCGATCTGCTCTCTGCCAATACAGAGACGCCA
*
58832036 AATCTG-CTATCTTTGATCTGCTCTCTGCCAATACAGAGACGCCA
1 AATCTGTCTATCTTCGATCTGCTCTCTGCCAATACAGAGACGCCA
* *
58832080 AATCTGT-TATCTTTGATCTGCTCTCCGCCAATACAGAGACGCCA
1 AATCTGTCTATCTTCGATCTGCTCTCTGCCAATACAGAGACGCCA
* *
58832124 AATCT-TCTATCTTCGATCTGCCCTCTGACAATACAGAGACGCCA
1 AATCTGTCTATCTTCGATCTGCTCTCTGCCAATACAGAGACGCCA
* * * *
58832168 AATCTG-CTATCTTCGATCTGCTCCCTCCCAATATAGGGACGCCA
1 AATCTGTCTATCTTCGATCTGCTCTCTGCCAATACAGAGACGCCA
* * * *
58832212 AATCTGT-TATCTTCAATCTACTCTCCGCCAATATAGAGACGCCA
1 AATCTGTCTATCTTCGATCTGCTCTCTGCCAATACAGAGACGCCA
* * * *
58832256 AATCT-ACTATCTTCGATCTACCCTCTGACAATACAGAGACGCCA
1 AATCTGTCTATCTTCGATCTGCTCTCTGCCAATACAGAGACGCCA
* *
58832300 AATCTG-CTATCTTCGATCTGCTCCCTGCCAATATAGAGACGCCA
1 AATCTGTCTATCTTCGATCTGCTCTCTGCCAATACAGAGACGCCA
* *
58832344 AATCTGT-TATCTTCGATCTGTTCTCCGCCAATACAGAGACGCCA
1 AATCTGTCTATCTTCGATCTGCTCTCTGCCAATACAGAGACGCCA
* * *
58832388 AATCTG-CTATCTTCGATCTGCCCTCTGACAATACAGAGACGCTA
1 AATCTGTCTATCTTCGATCTGCTCTCTGCCAATACAGAGACGCCA
58832432 AATCT
1 AATCT
58832437 ATGGGATTCG
Statistics
Matches: 429, Mismatches: 50, Indels: 20
0.86 0.10 0.04
Matches are distributed among these distances:
43 2 0.00
44 427 1.00
ACGTcount: A:0.26, C:0.29, G:0.15, T:0.30
Consensus pattern (45 bp):
AATCTGTCTATCTTCGATCTGCTCTCTGCCAATACAGAGACGCCA
Found at i:58832074 original size:132 final size:132
Alignment explanation
Indices: 58831904--58832436 Score: 796
Period size: 132 Copynumber: 4.0 Consensus size: 132
58831894 CAGGAACACC
* * * * * *
58831904 AATCTGTTATTTTCTATCTGCTCTCTGCCAATATAGAGATGCCAAATCTGTCATCTTCGATCTGC
1 AATCTGCTATCTTCGATCTGCTCCCTGCCAATATAGAGACGCCAAATCTGTTATCTTCGATCTGC
* * * * * * * * **
58831969 TCTCTGTCAATACAGAGATGCCAAATCTGCTATCTTTGATCTGCTCTCCGCCAATATAGAGGTGC
66 TCTCCGCCAATACAGAGACGCCAAATCTGCTATCTTCGATCTGCCCTCTGACAATACAGAGACGC
58832034 CA
131 CA
* * * *
58832036 AATCTGCTATCTTTGATCTGCTCTCTGCCAATACAGAGACGCCAAATCTGTTATCTTTGATCTGC
1 AATCTGCTATCTTCGATCTGCTCCCTGCCAATATAGAGACGCCAAATCTGTTATCTTCGATCTGC
*
58832101 TCTCCGCCAATACAGAGACGCCAAATCTTCTATCTTCGATCTGCCCTCTGACAATACAGAGACGC
66 TCTCCGCCAATACAGAGACGCCAAATCTGCTATCTTCGATCTGCCCTCTGACAATACAGAGACGC
58832166 CA
131 CA
* * * *
58832168 AATCTGCTATCTTCGATCTGCTCCCTCCCAATATAGGGACGCCAAATCTGTTATCTTCAATCTAC
1 AATCTGCTATCTTCGATCTGCTCCCTGCCAATATAGAGACGCCAAATCTGTTATCTTCGATCTGC
* * *
58832233 TCTCCGCCAATATAGAGACGCCAAATCTACTATCTTCGATCTACCCTCTGACAATACAGAGACGC
66 TCTCCGCCAATACAGAGACGCCAAATCTGCTATCTTCGATCTGCCCTCTGACAATACAGAGACGC
58832298 CA
131 CA
*
58832300 AATCTGCTATCTTCGATCTGCTCCCTGCCAATATAGAGACGCCAAATCTGTTATCTTCGATCTGT
1 AATCTGCTATCTTCGATCTGCTCCCTGCCAATATAGAGACGCCAAATCTGTTATCTTCGATCTGC
58832365 TCTCCGCCAATACAGAGACGCCAAATCTGCTATCTTCGATCTGCCCTCTGACAATACAGAGACGC
66 TCTCCGCCAATACAGAGACGCCAAATCTGCTATCTTCGATCTGCCCTCTGACAATACAGAGACGC
*
58832430 TA
131 CA
58832432 AATCT
1 AATCT
58832437 ATGGGATTCG
Statistics
Matches: 362, Mismatches: 39, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
132 362 1.00
ACGTcount: A:0.26, C:0.29, G:0.15, T:0.30
Consensus pattern (132 bp):
AATCTGCTATCTTCGATCTGCTCCCTGCCAATATAGAGACGCCAAATCTGTTATCTTCGATCTGC
TCTCCGCCAATACAGAGACGCCAAATCTGCTATCTTCGATCTGCCCTCTGACAATACAGAGACGC
CA
Found at i:58843091 original size:130 final size:130
Alignment explanation
Indices: 58842855--58843182 Score: 290
Period size: 130 Copynumber: 2.5 Consensus size: 130
58842845 AAAAGCGTAG
* * *
58842855 CCCAGCACGATAGGGCTCGATTCTCAAATCGCCAAACATCGAACATAGCCTTTATTTTGAAAGAT
1 CCCAGCACGATAGGGCACGATTCTCAAATCGCCAAACATCGAACATAGCCTTCATTTTAAAAGAT
* * * ** *
58842920 TTTAGAAAATGTGAGTGAAATTCCGGAAGGATCTTTAATTGTTTTGGACCAATGAAAAGGCACAA
66 TTTAGAAAATATGAGTGAAATGCCGAAAGGATAGTCAATTGTTTTGGACCAATGAAAAGGCACAA
* * *
58842985 CCCAGCACGATAGGGCACGATTCTCAAATCGCCAAACAATTG-ACATCGCCTTCGTTTTAAAATG
1 CCCAGCACGATAGGGCACGATTCTCAAATCGCCAAAC-ATCGAACATAGCCTTCATTTTAAAA-G
* * * * *
58843049 TTTTCTA-AAAA-ATGAGTGAAA-GCCTAAAGGAATAGTCGATTG-TTTCGACCAAACGAGAAA-
64 ATTT-TAGAAAATATGAGTGAAATGCCGAAAGG-ATAGTCAATTGTTTTGGACC-AATGA-AAAG
* *
58843109 TCATAA
125 GCACAA
* * * * * * * * * * *
58843115 CCCAGCATGGTAGGGCATGATTCCCGAATCGTCAAACACCAAATATTGCCTTCATTTTAAATGAT
1 CCCAGCACGATAGGGCACGATTCTCAAATCGCCAAACATCGAACATAGCCTTCATTTTAAAAGAT
58843180 TTT
66 TTT
58843183 TTTTAGAATA
Statistics
Matches: 158, Mismatches: 33, Indels: 16
0.76 0.16 0.08
Matches are distributed among these distances:
128 1 0.01
129 18 0.11
130 123 0.78
131 14 0.09
132 2 0.01
ACGTcount: A:0.34, C:0.20, G:0.18, T:0.27
Consensus pattern (130 bp):
CCCAGCACGATAGGGCACGATTCTCAAATCGCCAAACATCGAACATAGCCTTCATTTTAAAAGAT
TTTAGAAAATATGAGTGAAATGCCGAAAGGATAGTCAATTGTTTTGGACCAATGAAAAGGCACAA
Found at i:58848364 original size:84 final size:84
Alignment explanation
Indices: 58848223--58848384 Score: 279
Period size: 84 Copynumber: 1.9 Consensus size: 84
58848213 GCACAGTATT
* *
58848223 GTTTCAGCCCATGAAGACGCTCATGGCCATCTCGTCGACCACACAGCCATGTTTTGTCACACGGC
1 GTTTCAGCCCATGAAGACGCTCATGGCCATCTCGTAGACCACACAACCATGTTTTGTCACACGGC
*
58848288 CTGCCACGCGGGCATAATC
66 CTGCCACACGGGCATAATC
* *
58848307 GTTTCGGCCCATGAAGACTCTCATGGCCATCTCGTAGACCACACAACCATGTTTTGTCACACGGC
1 GTTTCAGCCCATGAAGACGCTCATGGCCATCTCGTAGACCACACAACCATGTTTTGTCACACGGC
58848372 CTGCCACACGGGC
66 CTGCCACACGGGC
58848385 GCCGACACAC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
84 73 1.00
ACGTcount: A:0.22, C:0.35, G:0.22, T:0.22
Consensus pattern (84 bp):
GTTTCAGCCCATGAAGACGCTCATGGCCATCTCGTAGACCACACAACCATGTTTTGTCACACGGC
CTGCCACACGGGCATAATC
Found at i:58848452 original size:15 final size:16
Alignment explanation
Indices: 58848419--58848453 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
58848409 CAACCCACTT
*
58848419 TTTTTGCTTTTCAGCC
1 TTTTGGCTTTTCAGCC
58848435 TTTTGGCTTTTCAG-C
1 TTTTGGCTTTTCAGCC
58848450 TTTT
1 TTTT
58848454 CAACCTTTGC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 5 0.28
16 13 0.72
ACGTcount: A:0.06, C:0.20, G:0.14, T:0.60
Consensus pattern (16 bp):
TTTTGGCTTTTCAGCC
Found at i:58854937 original size:40 final size:40
Alignment explanation
Indices: 58854877--58855103 Score: 328
Period size: 40 Copynumber: 5.7 Consensus size: 40
58854867 CAATTGAGGA
*
58854877 TTATATCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
1 TTATTTCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
* *
58854917 CTATTTCCGGGTTAAGTCCCGAAGGCATTCGTGCTAGTTG
1 TTATTTCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
58854957 TTATTTCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
1 TTATTTCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
** * * *
58854997 TTATTTCTAGGTTAAGCCCCGAAGGCATTCGTCCTGGTCG
1 TTATTTCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
* *
58855037 CTATTTCCGGGTTAAGTCCCGAAGGCATTTGTGCTGGTTG
1 TTATTTCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
** * *
58855077 TTACATCCGGGCTAAATCCCGAAGGCA
1 TTATTTCCGGGTTAAGTCCCGAAGGCA
58855104 ATTAGGTTGG
Statistics
Matches: 165, Mismatches: 22, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 165 1.00
ACGTcount: A:0.18, C:0.22, G:0.28, T:0.32
Consensus pattern (40 bp):
TTATTTCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
Found at i:58856200 original size:28 final size:28
Alignment explanation
Indices: 58856160--58856290 Score: 165
Period size: 28 Copynumber: 4.6 Consensus size: 28
58856150 GTGAGCATGA
* *
58856160 ATATGAATGTGACTGGGCCTAACGGGCC
1 ATATAAATGTGATTGGGCCTAACGGGCC
*
58856188 ATATAAATGTGACTGGGCCTAACGGGCC
1 ATATAAATGTGATTGGGCCTAACGGGCC
* *
58856216 ATATAAATGTGATTTGGACCTAATGGGCC
1 ATATAAATGTGA-TTGGGCCTAACGGGCC
*
58856245 ATATACAA-GTGATTCGGGCCTAATGGGCC
1 ATATA-AATGTGATT-GGGCCTAACGGGCC
*
58856274 ATATAAATATGATTGGG
1 ATATAAATGTGATTGGG
58856291 GTTAATGGGC
Statistics
Matches: 93, Mismatches: 6, Indels: 8
0.87 0.06 0.07
Matches are distributed among these distances:
28 46 0.49
29 45 0.48
30 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.27, T:0.26
Consensus pattern (28 bp):
ATATAAATGTGATTGGGCCTAACGGGCC
Found at i:58856247 original size:29 final size:29
Alignment explanation
Indices: 58856160--58856287 Score: 154
Period size: 29 Copynumber: 4.5 Consensus size: 29
58856150 GTGAGCATGA
* *
58856160 ATATGAATGTGA-CTGGGCCTAACGGGCC
1 ATATAAATGTGATTTGGGCCTAACGGGCC
*
58856188 ATATAAATGTGA-CTGGGCCTAACGGGCC
1 ATATAAATGTGATTTGGGCCTAACGGGCC
* *
58856216 ATATAAATGTGATTTGGACCTAATGGGCC
1 ATATAAATGTGATTTGGGCCTAACGGGCC
* *
58856245 ATATACAA-GTGATTCGGGCCTAATGGGCC
1 ATATA-AATGTGATTTGGGCCTAACGGGCC
*
58856274 ATATAAATATGATT
1 ATATAAATGTGATT
58856288 GGGGTTAATG
Statistics
Matches: 90, Mismatches: 7, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
28 41 0.46
29 47 0.52
30 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.26, T:0.27
Consensus pattern (29 bp):
ATATAAATGTGATTTGGGCCTAACGGGCC
Found at i:58860441 original size:8 final size:8
Alignment explanation
Indices: 58860428--58860474 Score: 58
Period size: 8 Copynumber: 5.9 Consensus size: 8
58860418 ATTGACAAAA
58860428 GCCGAAAT
1 GCCGAAAT
58860436 GCCGAAAT
1 GCCGAAAT
* *
58860444 ACTGAAAT
1 GCCGAAAT
*
58860452 GCCGAAAA
1 GCCGAAAT
*
58860460 GCTGAAAT
1 GCCGAAAT
58860468 GCCGAAA
1 GCCGAAA
58860475 GCCTAAAGTT
Statistics
Matches: 31, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
8 31 1.00
ACGTcount: A:0.43, C:0.21, G:0.23, T:0.13
Consensus pattern (8 bp):
GCCGAAAT
Found at i:58860452 original size:16 final size:16
Alignment explanation
Indices: 58860424--58860474 Score: 77
Period size: 16 Copynumber: 3.2 Consensus size: 16
58860414 ATGAATTGAC
*
58860424 AAAAGCCGAAATGCCG
1 AAAAGCTGAAATGCCG
58860440 AAATA-CTGAAATGCCG
1 AAA-AGCTGAAATGCCG
58860456 AAAAGCTGAAATGCCG
1 AAAAGCTGAAATGCCG
58860472 AAA
1 AAA
58860475 GCCTAAAGTT
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
15 1 0.03
16 30 0.94
17 1 0.03
ACGTcount: A:0.47, C:0.20, G:0.22, T:0.12
Consensus pattern (16 bp):
AAAAGCTGAAATGCCG
Found at i:58860790 original size:29 final size:29
Alignment explanation
Indices: 58860692--58860806 Score: 110
Period size: 29 Copynumber: 4.0 Consensus size: 29
58860682 GTGAGCATGA
* * **
58860692 ATATGAATGTGA-CTGGGCCTAACGGGCC
1 ATATAAATGTGATTTGGGCCTAATAGGCC
* *
58860720 ATATAAATGCGATTTAGGCCTAAT-GGACC
1 ATATAAATGTGATTTGGGCCTAATAGG-CC
* *
58860749 ATATATAGGTGATTTGGGCCTAATAGGCC
1 ATATAAATGTGATTTGGGCCTAATAGGCC
* *
58860778 ATATAAATATGA-TTGGGCTTAATAGGCC
1 ATATAAATGTGATTTGGGCCTAATAGGCC
58860806 A
1 A
58860807 GATATAGGTA
Statistics
Matches: 71, Mismatches: 13, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
28 28 0.39
29 41 0.58
30 2 0.03
ACGTcount: A:0.31, C:0.16, G:0.25, T:0.28
Consensus pattern (29 bp):
ATATAAATGTGATTTGGGCCTAATAGGCC
Found at i:58863796 original size:19 final size:18
Alignment explanation
Indices: 58863772--58863812 Score: 73
Period size: 19 Copynumber: 2.2 Consensus size: 18
58863762 CATTTGAATC
58863772 AAATAAAACATTTATTTAG
1 AAATAAAACATTTATTT-G
58863791 AAATAAAACATTTATTTG
1 AAATAAAACATTTATTTG
58863809 AAAT
1 AAAT
58863813 TAACAATATC
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
18 5 0.23
19 17 0.77
ACGTcount: A:0.54, C:0.05, G:0.05, T:0.37
Consensus pattern (18 bp):
AAATAAAACATTTATTTG
Found at i:58864514 original size:49 final size:49
Alignment explanation
Indices: 58864458--58864557 Score: 173
Period size: 49 Copynumber: 2.0 Consensus size: 49
58864448 TATAAATATC
*
58864458 AATGTATGAGAATGAATACTACATAAATATTTTAAATATAAATTTACAT
1 AATGTATGAGAATAAATACTACATAAATATTTTAAATATAAATTTACAT
* *
58864507 AATGTATGTGAATAAATATTACATAAATATTTTAAATATAAATTTACAT
1 AATGTATGAGAATAAATACTACATAAATATTTTAAATATAAATTTACAT
58864556 AA
1 AA
58864558 AGAGAATTTT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
49 48 1.00
ACGTcount: A:0.50, C:0.05, G:0.07, T:0.38
Consensus pattern (49 bp):
AATGTATGAGAATAAATACTACATAAATATTTTAAATATAAATTTACAT
Found at i:58864520 original size:25 final size:25
Alignment explanation
Indices: 58864477--58864558 Score: 89
Period size: 25 Copynumber: 3.3 Consensus size: 25
58864467 GAATGAATAC
*
58864477 TACATAAATATTTTAAATATAAATT
1 TACATAAATATTGTAAATATAAATT
* *
58864502 TACAT-AATGTATGT-GA-ATAAATAT
1 TACATAAATAT-TGTAAATATAAAT-T
*
58864526 TACATAAATATTTTAAATATAAATT
1 TACATAAATATTGTAAATATAAATT
58864551 TACATAAA
1 TACATAAA
58864559 GAGAATTTTA
Statistics
Matches: 46, Mismatches: 6, Indels: 10
0.74 0.10 0.16
Matches are distributed among these distances:
23 6 0.13
24 13 0.28
25 21 0.46
26 6 0.13
ACGTcount: A:0.51, C:0.05, G:0.04, T:0.40
Consensus pattern (25 bp):
TACATAAATATTGTAAATATAAATT
Found at i:58865906 original size:12 final size:12
Alignment explanation
Indices: 58865875--58865906 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
58865865 TTTTGGGCTA
*
58865875 GGGTATTAATTT
1 GGGTATTGATTT
58865887 GGGTATTGATTT
1 GGGTATTGATTT
58865899 GGGTATTG
1 GGGTATTG
58865907 GGTTAGTGAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.19, C:0.00, G:0.34, T:0.47
Consensus pattern (12 bp):
GGGTATTGATTT
Found at i:58869776 original size:13 final size:13
Alignment explanation
Indices: 58869758--58869784 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
58869748 AGTGGCTCGA
58869758 TGTTTGTATTATC
1 TGTTTGTATTATC
58869771 TGTTTGTATTATC
1 TGTTTGTATTATC
58869784 T
1 T
58869785 ACCCTATCTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.07, G:0.15, T:0.63
Consensus pattern (13 bp):
TGTTTGTATTATC
Found at i:58873838 original size:86 final size:85
Alignment explanation
Indices: 58873692--58873852 Score: 222
Period size: 86 Copynumber: 1.9 Consensus size: 85
58873682 CAATGCCAAC
*
58873692 GTCCCAGACCTGGTCTTACATGTAATCAAACATCGATGCCACTATCCCAGACAGGGTCTTACACG
1 GTCCCAGACATGGTCTTACATGTAATCAAACATCGATGCCACTATCCCAGACAGGGTCTTACACG
*
58873757 AAATCAGATACGATACCGAT
66 AAAACAGATACGATACCGAT
*
58873777 GTCCCAGACATGGTCTTACATGTAAAAT-AAA-AGTCGATGCCAAC-GTCCCAGAC-GTGGTCTT
1 GTCCCAGACATGGTCTTACATGT--AATCAAACA-TCGATGCC-ACTATCCCAGACAG-GGTCTT
58873838 ACACGAAAACAGATA
61 ACACGAAAACAGATA
58873853 ACAAAATCCT
Statistics
Matches: 68, Mismatches: 3, Indels: 9
0.85 0.04 0.11
Matches are distributed among these distances:
85 24 0.35
86 39 0.57
87 5 0.07
ACGTcount: A:0.34, C:0.26, G:0.19, T:0.22
Consensus pattern (85 bp):
GTCCCAGACATGGTCTTACATGTAATCAAACATCGATGCCACTATCCCAGACAGGGTCTTACACG
AAAACAGATACGATACCGAT
Found at i:58885432 original size:46 final size:46
Alignment explanation
Indices: 58885382--58885557 Score: 175
Period size: 46 Copynumber: 3.8 Consensus size: 46
58885372 TGGTTGAGCA
58885382 TCCGAACTCGTTGAGTTGAGTCCGAATTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAATTCACTTATGGATGCGAATG
* * * *
58885428 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAATTCACTTATGGATGCGAA-T--G
*
58885473 CATCCGAACTCGTTGAGTTGAGTCC-AAGTTCACTTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAA-TTCAC-TTATGGATGCGAATG
* * *
58885522 -CCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAATTCACTTATGG
58885558 GCGGGTTACA
Statistics
Matches: 106, Mismatches: 12, Indels: 25
0.74 0.08 0.17
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 9 0.08
46 54 0.51
47 27 0.25
49 3 0.03
51 4 0.04
52 2 0.02
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAATTCACTTATGGATGCGAATG
Found at i:58885538 original size:93 final size:93
Alignment explanation
Indices: 58885379--58885550 Score: 294
Period size: 93 Copynumber: 1.8 Consensus size: 93
58885369 GGATGGTTGA
*
58885379 GCATCCGAACTCGTTGAGTTGAGTCCGAATTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAATTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
58885444 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
58885472 GCATCCGAACTCGTTGAGTTGAGTCC-AAGTTCACTTTATGGATGCGAACG-CCGAGCTCGTTGA
1 GCATCCGAACTCGTTGAGTTGAGTCCGAA-TTCAC-TTATGGATGCGAACGTCCGAACTCGTTGA
58885535 GTTGAGTCCGAGTTCG
64 GTTGAGTCCGAGTTCG
58885551 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 2, Indels: 4
0.93 0.02 0.05
Matches are distributed among these distances:
92 2 0.03
93 59 0.79
94 14 0.19
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAATTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:58892541 original size:46 final size:46
Alignment explanation
Indices: 58892488--58892663 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
58892478 TATTTGGGCA
58892488 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
58892534 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
58892579 CATCCGAACTCATTGAGTTGAGTCCGAGTTCATTTATGGATGCGAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
58892627 CCCGAGCTCGTTGAGTTGAGTCTGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
58892664 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 13, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 60 0.56
47 28 0.26
48 3 0.03
50 5 0.05
51 2 0.02
ACGTcount: A:0.21, C:0.19, G:0.29, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:58892643 original size:93 final size:93
Alignment explanation
Indices: 58892484--58892656 Score: 301
Period size: 93 Copynumber: 1.9 Consensus size: 93
58892474 GGGATATTTG
* *
58892484 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAG
58892549 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* *
58892577 GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCATTTATGGATGCGAATGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAG
*
58892642 TTGAGTCTGAGTTCG
66 TTGAGTCCGAGTTCG
58892657 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:58907149 original size:28 final size:28
Alignment explanation
Indices: 58907107--58907209 Score: 143
Period size: 28 Copynumber: 3.7 Consensus size: 28
58907097 TGGCCCCTTT
*
58907107 AGGCCCAATCTCATTCATATGGCCCATC
1 AGGCCCAATCACATTCATATGGCCCATC
* *
58907135 GGGCCCAATCGCATTCATATGGCCCATC
1 AGGCCCAATCACATTCATATGGCCCATC
* *
58907163 AGACCCAATCACTTTCATATGGCCCATC
1 AGGCCCAATCACATTCATATGGCCCATC
* *
58907191 AGGCCCACTCACACTCATA
1 AGGCCCAATCACATTCATA
58907210 GTCATGCAAT
Statistics
Matches: 65, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 65 1.00
ACGTcount: A:0.26, C:0.37, G:0.15, T:0.22
Consensus pattern (28 bp):
AGGCCCAATCACATTCATATGGCCCATC
Found at i:58907450 original size:16 final size:16
Alignment explanation
Indices: 58907429--58907459 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
58907419 AACTTCCAGT
*
58907429 TTTTCGGCATTTCGAC
1 TTTTCGGCAATTCGAC
58907445 TTTTCGGCAATTCGA
1 TTTTCGGCAATTCGA
58907460 GATTTGCCGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.16, C:0.23, G:0.19, T:0.42
Consensus pattern (16 bp):
TTTTCGGCAATTCGAC
Found at i:58909236 original size:44 final size:47
Alignment explanation
Indices: 58909124--58909244 Score: 171
Period size: 47 Copynumber: 2.6 Consensus size: 47
58909114 CAGACGAGCA
58909124 CTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCAACAGAGATAGC
1 CTAGTGTAAGACATGTCTGGGACATGCATCGGCCT-AACAGAGATAGC
* *
58909172 C-AGTGTAAGACGTGTCTGGGACATGCATCGG-CT-A-AGAG-TTGC
1 CTAGTGTAAGACATGTCTGGGACATGCATCGGCCTAACAGAGATAGC
58909214 GCTAGTGTAAGACATGTCTGGGACATGCATC
1 -CTAGTGTAAGACATGTCTGGGACATGCATC
58909245 AGCACGCATA
Statistics
Matches: 68, Mismatches: 3, Indels: 8
0.86 0.04 0.10
Matches are distributed among these distances:
42 3 0.04
43 5 0.07
44 28 0.41
46 2 0.03
47 29 0.43
48 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.30, T:0.23
Consensus pattern (47 bp):
CTAGTGTAAGACATGTCTGGGACATGCATCGGCCTAACAGAGATAGC
Found at i:58910958 original size:68 final size:64
Alignment explanation
Indices: 58910866--58911087 Score: 223
Period size: 67 Copynumber: 3.4 Consensus size: 64
58910856 TAATACGGGA
* * *
58910866 TGTATACCATGTGTACAACAGAGCTACGAGACATTATGAGGTAGCTAGGTTGCATGGGTGATACT
1 TGTACACCATGTGTACAAGAGAGCTACGAG--A-TA-GAAGTAGCTAGGTTGCATGGGTGATACT
58910931 ATG
62 ATG
* * * * *
58910934 TGTACACCATGTAG-ACAAGAGAGCTACGAGATAGATGTAGCTAGGTTGCATGTGTGGTTCCAGG
1 TGTACACCATGT-GTACAAGAGAGCTACGAGATAGAAGTAGCTAGGTTGCATGGGTGATACTA--
58910998 TG
63 TG
* * ** * **
58911000 AAGGACACCATGTAAACAAGAGAGCTACGAGATA-AAGTGGCTAGGTCACATGGGTGATACTATG
1 -TGTACACCATGTGTACAAGAGAGCTACGAGATAGAAGTAGCTAGGTTGCATGGGTGATACTATG
58911064 TGTACACCATGTGTACAAGAGAGC
1 TGTACACCATGTGTACAAGAGAGC
58911088 CAAAATTATG
Statistics
Matches: 127, Mismatches: 22, Indels: 15
0.77 0.13 0.09
Matches are distributed among these distances:
63 20 0.16
64 26 0.20
65 2 0.02
66 23 0.18
67 29 0.23
68 26 0.20
69 1 0.01
ACGTcount: A:0.32, C:0.16, G:0.29, T:0.24
Consensus pattern (64 bp):
TGTACACCATGTGTACAAGAGAGCTACGAGATAGAAGTAGCTAGGTTGCATGGGTGATACTATG
Found at i:58919094 original size:15 final size:17
Alignment explanation
Indices: 58919064--58919095 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
58919054 ACTTGTATTC
58919064 ATATTGTCATTGAATTG
1 ATATTGTCATTGAATTG
58919081 ATATTGT-A-TGAATTG
1 ATATTGTCATTGAATTG
58919096 TTAAGTTATA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 1 0.07
17 7 0.47
ACGTcount: A:0.31, C:0.03, G:0.19, T:0.47
Consensus pattern (17 bp):
ATATTGTCATTGAATTG
Found at i:58923233 original size:15 final size:16
Alignment explanation
Indices: 58923201--58923234 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
58923191 ATTTCATCTC
58923201 ATTTGCATTTAGGTTA
1 ATTTGCATTTAGGTTA
*
58923217 ATTTTCATTTA-GTTA
1 ATTTGCATTTAGGTTA
58923232 ATT
1 ATT
58923235 AATTTAATCT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 7 0.41
16 10 0.59
ACGTcount: A:0.26, C:0.06, G:0.12, T:0.56
Consensus pattern (16 bp):
ATTTGCATTTAGGTTA
Found at i:58939200 original size:47 final size:47
Alignment explanation
Indices: 58939148--58939550 Score: 637
Period size: 47 Copynumber: 8.6 Consensus size: 47
58939138 GATAATTGTG
* *
58939148 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
58939195 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
58939242 ATGTGAAAGTGTATATATGTGATAAGGCCTAAT-GCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
58939288 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
58939335 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
58939384 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * *
58939431 ATGTGAAAGTGTATATATGTGACAGGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * *
58939478 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
58939525 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
58939551 TCCCGAAGGG
Statistics
Matches: 334, Mismatches: 19, Indels: 6
0.93 0.05 0.02
Matches are distributed among these distances:
46 44 0.13
47 244 0.73
49 46 0.14
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:58939432 original size:189 final size:190
Alignment explanation
Indices: 58939148--58939550 Score: 681
Period size: 189 Copynumber: 2.1 Consensus size: 190
58939138 GATAATTGTG
58939148 ATGTG-AA-TGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
*
58939211 ATGTGATAAGGCCTAATAGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT-
66 ATGTGATAAGGCCTAATAGCCAATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCTAATA
* * *
58939275 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATGA
131 GCCGATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCGAATGGCCAACGTGATGA
58939335 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* * *
58939400 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCTAATA
66 ATGTGATAAGGCCTAATAGCCAATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCTAATA
* * *
58939465 GCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGG
131 GCCGATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCGAATGGCCAACGTGATGA
58939525 ATGTGAAAGTGTATA-A-ATGTGATAAG
1 ATGTGAAAGTGTATATATATGTGATAAG
58939551 TCCCGAAGGG
Statistics
Matches: 203, Mismatches: 10, Indels: 5
0.93 0.05 0.02
Matches are distributed among these distances:
187 5 0.02
188 12 0.06
189 117 0.58
190 69 0.34
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.29
Consensus pattern (190 bp):
ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
ATGTGATAAGGCCTAATAGCCAATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCTAATA
GCCGATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCGAATGGCCAACGTGATGA
Found at i:58950170 original size:40 final size:40
Alignment explanation
Indices: 58950086--58950269 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 40
58950076 TTGAATGCTG
* * * *
58950086 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTATTAAT
**
58950125 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTATTAAT
1 -TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTATTAAT
* * * *
58950166 TCCGGGTCAAGTCCCGAAGGCCTTTGTGCGAGATACTAAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
* *
58950206 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATT-AAT
58950246 TCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
58950270 GTATGAGTTA
Statistics
Matches: 123, Mismatches: 16, Indels: 10
0.83 0.11 0.07
Matches are distributed among these distances:
39 2 0.02
40 111 0.90
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
Found at i:58954626 original size:47 final size:47
Alignment explanation
Indices: 58954563--58954948 Score: 524
Period size: 47 Copynumber: 8.4 Consensus size: 47
58954553 CCCTTCGGGA
* *
58954563 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * * * * *
58954610 CTCATCACATGTATACACCTTCACA-TCAATCATC-TCGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTC-ATCA-CATTGGCCATTCGGC
*
58954657 CTTATCTCATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
58954704 CTTATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
58954751 CTTATCACATATATACACTTTCACATTCATCACATTGGCCACTCGG-
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
58954797 CATATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
58954844 CTTATCA-ATATAT--ACTTTCACATTCATCACATCGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
58954888 CTTAT--CATATATACACTTTCACAATTC-T--CATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCAC-ATTCATCACATTGGCCATTCGGC
*
58954931 CTTATCACATATACACAC
1 CTTATCACATATATACAC
58954949 CTTGTACATC
Statistics
Matches: 306, Mismatches: 22, Indels: 24
0.87 0.06 0.07
Matches are distributed among these distances:
43 25 0.08
44 35 0.11
45 19 0.06
46 56 0.18
47 168 0.55
48 3 0.01
ACGTcount: A:0.28, C:0.31, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:58958402 original size:40 final size:40
Alignment explanation
Indices: 58958308--58958452 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
58958298 TACTCGAATG
*
58958308 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* *
58958349 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * *
58958389 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
* *
58958429 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
58958453 CTTGTGCGAG
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 1 0.01
40 62 0.67
41 28 0.30
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:58973019 original size:40 final size:40
Alignment explanation
Indices: 58972935--58973118 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 40
58972925 TTGAATGCTG
* * * *
58972935 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTATTAAT
**
58972974 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTATTAAT
1 -TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTATTAAT
* * * *
58973015 TCCGGGTCAAGTCCCGAAGGCCTTTGTGCGAGATACTAAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
* *
58973055 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATT-AAT
58973095 TCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
58973119 GTATGAGTTA
Statistics
Matches: 123, Mismatches: 16, Indels: 10
0.83 0.11 0.07
Matches are distributed among these distances:
39 2 0.02
40 111 0.90
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
Found at i:58975658 original size:43 final size:43
Alignment explanation
Indices: 58975599--58975757 Score: 162
Period size: 43 Copynumber: 3.7 Consensus size: 43
58975589 CAGTGCCATA
* * * *
58975599 TCCTAGATATGATCTTACATGTTATCACATATCGATGCCACTG
1 TCCTAGACATGGTCTTACATGTAATCACATATCGATGCCAATG
* * * * * *
58975642 TCCTAGATAGGGTCTTACACGAAATCGA-TTAACGATGCCAATG
1 TCCTAGACATGGTCTTACATGTAATC-ACATATCGATGCCAATG
*
58975685 T-CTCAGACATGGTCTTACATGTAATCACAATAT-AATGCCAATG
1 TCCT-AGACATGGTCTTACATGTAATCAC-ATATCGATGCCAATG
*
58975728 TCCCAGACATGGTCTTACATGTAATCACAT
1 TCCTAGACATGGTCTTACATGTAATCACAT
58975758 CTCGGTAACC
Statistics
Matches: 95, Mismatches: 16, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
42 5 0.05
43 86 0.91
44 4 0.04
ACGTcount: A:0.31, C:0.23, G:0.16, T:0.30
Consensus pattern (43 bp):
TCCTAGACATGGTCTTACATGTAATCACATATCGATGCCAATG
Found at i:58979972 original size:23 final size:23
Alignment explanation
Indices: 58979945--58979990 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
58979935 AGATCAACAC
58979945 AAATAT-AATCACATACATATCAA
1 AAATATCAATCACAT-CATATCAA
* *
58979968 AAATATCATTCCCATCATATCAA
1 AAATATCAATCACATCATATCAA
58979991 TCATCATAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 14 0.70
24 6 0.30
ACGTcount: A:0.50, C:0.22, G:0.00, T:0.28
Consensus pattern (23 bp):
AAATATCAATCACATCATATCAA
Found at i:58995538 original size:53 final size:53
Alignment explanation
Indices: 58995454--58995656 Score: 199
Period size: 53 Copynumber: 3.8 Consensus size: 53
58995444 TTCCTTTTTA
* * *
58995454 AACTTACCATTTCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATG
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATG
* * * * * *
58995507 AACTCACCAGTGCCATGCCTTGGCATTGTCTTACATGGGATCTTTGCCTTATAG
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTAT-G
** * * * * * * *
58995561 TAGTTTATCAATGTCATGTCTTGACATGGTCTTACTTGATTTCCTTGCCTTGAAG
1 -AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTT-ATG
* *
58995616 AACTTACCAATGCCATGCCTTGGCATGGTCTTACTTGGTAT
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTAT
58995657 ACTTAAACCC
Statistics
Matches: 116, Mismatches: 31, Indels: 5
0.76 0.20 0.03
Matches are distributed among these distances:
53 44 0.38
54 34 0.29
55 37 0.32
56 1 0.01
ACGTcount: A:0.21, C:0.23, G:0.18, T:0.38
Consensus pattern (53 bp):
AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATG
Found at i:58998013 original size:20 final size:20
Alignment explanation
Indices: 58997982--58998032 Score: 61
Period size: 20 Copynumber: 2.5 Consensus size: 20
58997972 GGGATTGGAC
*
58997982 TTGGTGCTTTTGAT-TGCACAT
1 TTGGTGCCTTTG-TCTGCAC-T
58998003 TT-GTGCCTTTGTCTGCACT
1 TTGGTGCCTTTGTCTGCACT
58998022 TTGGTGCCTTT
1 TTGGTGCCTTT
58998033 ATTACGCATC
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
19 4 0.15
20 21 0.78
21 2 0.07
ACGTcount: A:0.08, C:0.20, G:0.24, T:0.49
Consensus pattern (20 bp):
TTGGTGCCTTTGTCTGCACT
Found at i:59005635 original size:66 final size:69
Alignment explanation
Indices: 59005505--59005635 Score: 151
Period size: 66 Copynumber: 1.9 Consensus size: 69
59005495 GGGATGTATC
* * *
59005505 CCATGTAGACAAGAGAGCTACGGGAGAGGATAAATGTAGCTAGGTCGCATGTGTGATTCCAAGTG
1 CCATGTAGACAAGAGAGCTAC--G-GAGGATAAATGTAGCTAGGTCACATGGGTGATACCAAGTG
59005570 AAAGACA
63 AAAGACA
* * * *
59005577 CCATGTAGACAAGAGAGCTAC-GA-GATAAGT-TGGCTAGGTCACATGGGTGGTACTAAGTG
1 CCATGTAGACAAGAGAGCTACGGAGGATAAATGTAGCTAGGTCACATGGGTGATACCAAGTG
59005636 TTCACCATGT
Statistics
Matches: 52, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
66 23 0.44
67 6 0.12
68 2 0.04
72 21 0.40
ACGTcount: A:0.33, C:0.15, G:0.31, T:0.21
Consensus pattern (69 bp):
CCATGTAGACAAGAGAGCTACGGAGGATAAATGTAGCTAGGTCACATGGGTGATACCAAGTGAAA
GACA
Found at i:59016126 original size:28 final size:28
Alignment explanation
Indices: 59016086--59016155 Score: 106
Period size: 28 Copynumber: 2.5 Consensus size: 28
59016076 AATGAGATTG
*
59016086 GCACTAAGTGTGCGAGTTTCATT-GTATA
1 GCACTAAGTGTGCGAGTTTCATTATTA-A
*
59016114 GCACTAAGTGTGCGAGTTTGATTATTAA
1 GCACTAAGTGTGCGAGTTTCATTATTAA
59016142 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
59016156 GACTTACTAT
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
28 37 0.95
29 2 0.05
ACGTcount: A:0.26, C:0.14, G:0.27, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTCATTATTAA
Found at i:59023102 original size:19 final size:19
Alignment explanation
Indices: 59023078--59023114 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
59023068 TATTACATTT
59023078 CTAATACATCATATACTTG
1 CTAATACATCATATACTTG
59023097 CTAATACATCATATACTT
1 CTAATACATCATATACTT
59023115 TGCTTTCATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.38, C:0.22, G:0.03, T:0.38
Consensus pattern (19 bp):
CTAATACATCATATACTTG
Found at i:59026490 original size:27 final size:26
Alignment explanation
Indices: 59026446--59026497 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
59026436 CTTGCTGCAA
*
59026446 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
59026473 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
59026498 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:59026579 original size:27 final size:26
Alignment explanation
Indices: 59026538--59026597 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
59026528 ACATTTGTAT
* *
59026538 ATATCTGGTCTGGTGGCCTAGCCACA
1 ATATCTGATCTGGTGACCTAGCCACA
* * *
59026564 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTG-ATCTGGTGACCTAGCCACA
59026591 ATATCTG
1 ATATCTG
59026598 GCAGCCTCGC
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.22, C:0.23, G:0.22, T:0.33
Consensus pattern (26 bp):
ATATCTGATCTGGTGACCTAGCCACA
Found at i:59049036 original size:19 final size:20
Alignment explanation
Indices: 59049009--59049046 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 20
59048999 TGAATTTATA
* *
59049009 ATATTTTTA-AAGTTTGATG
1 ATATATTTATAAGCTTGATG
59049028 ATATATTTATAAGCTTGAT
1 ATATATTTATAAGCTTGAT
59049047 AGTTAAATAA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 8 0.50
20 8 0.50
ACGTcount: A:0.34, C:0.03, G:0.13, T:0.50
Consensus pattern (20 bp):
ATATATTTATAAGCTTGATG
Found at i:59061295 original size:43 final size:43
Alignment explanation
Indices: 59061185--59061282 Score: 151
Period size: 43 Copynumber: 2.3 Consensus size: 43
59061175 TTCGAGATGA
* * * *
59061185 GATTATGTGTAAGACCATGTCTGGGAGATTGGCATCATTATGT
1 GATTACGTGTAAGACCATGTCTGGGACAGTGGCATCATTATAT
59061228 GATTACGTGTAAGACCATGTCTGGGACAGTGGCATCATTATAT
1 GATTACGTGTAAGACCATGTCTGGGACAGTGGCATCATTATAT
*
59061271 GATTTCGTGTAA
1 GATTACGTGTAA
59061283 AGCCATAGCT
Statistics
Matches: 50, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 50 1.00
ACGTcount: A:0.27, C:0.13, G:0.27, T:0.34
Consensus pattern (43 bp):
GATTACGTGTAAGACCATGTCTGGGACAGTGGCATCATTATAT
Found at i:59062268 original size:20 final size:20
Alignment explanation
Indices: 59062243--59062281 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
59062233 ATGTTTGCCT
*
59062243 TGGTTGTTGATATGGTTAAG
1 TGGTTGTTCATATGGTTAAG
*
59062263 TGGTTGTTCATTTGGTTAA
1 TGGTTGTTCATATGGTTAA
59062282 TTATTAATTG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.18, C:0.03, G:0.31, T:0.49
Consensus pattern (20 bp):
TGGTTGTTCATATGGTTAAG
Found at i:59064737 original size:30 final size:30
Alignment explanation
Indices: 59064680--59064737 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
59064670 TTTTCGAGCC
* **
59064680 TAGGGGTAAAATGGTCATTTTGTCAAAGTT
1 TAGGGGAAAAATGGTCATTTTACCAAAGTT
59064710 TAGGGGAAAAATGGTCATTTTACCAAAG
1 TAGGGGAAAAATGGTCATTTTACCAAAG
59064738 ATATGAATTT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.34, C:0.09, G:0.26, T:0.31
Consensus pattern (30 bp):
TAGGGGAAAAATGGTCATTTTACCAAAGTT
Found at i:59065144 original size:47 final size:45
Alignment explanation
Indices: 59065072--59065277 Score: 179
Period size: 46 Copynumber: 4.5 Consensus size: 45
59065062 GGGTTATTGT
* * *
59065072 GAGCTAGTGTAAAACATGTCTGGGACATGCATTGGCCATATTATGA-
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCAT-TGA-GAC
*
59065118 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAG-CATTGAGAC
1 GAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCATTGAGAC
*
59065164 GAGTGCTAGTGTAAGACATGTCTGGGACATGCATCGGCC-TCGAGAC
1 GA--GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCATTGAGAC
* * * * * *
59065210 ATAAGTTAGTGTAAGACAT-TTTGGGACATGCATCGGCTA-CGAGAT
1 --GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCATTGAGAC
* *
59065255 GTGTTAGTGTAAGACAATGTCTG
1 GAGCTAGTGTAAGAC-ATGTCTG
59065278 AAACACGACA
Statistics
Matches: 135, Mismatches: 14, Indels: 23
0.78 0.08 0.13
Matches are distributed among these distances:
43 13 0.10
44 2 0.01
45 27 0.20
46 43 0.32
47 32 0.24
48 18 0.13
ACGTcount: A:0.28, C:0.17, G:0.29, T:0.26
Consensus pattern (45 bp):
GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCATTGAGAC
Found at i:59068005 original size:112 final size:112
Alignment explanation
Indices: 59067803--59068062 Score: 344
Period size: 112 Copynumber: 2.3 Consensus size: 112
59067793 TATATGTGGA
* * * *
59067803 ATCGATATGTGACTCTGACATATGTGTGCGAGTAAGTCCACGTTTCATACGTTGGCATCGATATA
1 ATCGATATGTGATTCTGATATATGTGTGCGAGTAAGTCCACATTTCATACATTGGCATCGATATA
* ***
59067868 TGACTCTGATATAAGTGTGAGAGTAA-ATCCATGTTTAATGTGTTGGC
66 TGACTCTGATATAAGTGTGAGAGTAAGA-CCACGTTTAATACATTGGC
* * * *
59067915 ATTGATATGTGATTCCGATATATGTGTGCGAATAAGTCCACATTTCATACATTGGCATCGATATG
1 ATCGATATGTGATTCTGATATATGTGTGCGAGTAAGTCCACATTTCATACATTGGCATCGATATA
*
59067980 TGACTCTGATATATGTGTGCA-AGTAAGACCACGTTTAATACATTGGC
66 TGACTCTGATATAAGTGTG-AGAGTAAGACCACGTTTAATACATTGGC
* * *
59068027 ATCCATATGTGATTTTGATATATGTGTACGAGTAAG
1 ATCGATATGTGATTCTGATATATGTGTGCGAGTAAG
59068063 ACCTTGTATG
Statistics
Matches: 127, Mismatches: 19, Indels: 4
0.85 0.13 0.03
Matches are distributed among these distances:
112 125 0.98
113 2 0.02
ACGTcount: A:0.28, C:0.15, G:0.22, T:0.35
Consensus pattern (112 bp):
ATCGATATGTGATTCTGATATATGTGTGCGAGTAAGTCCACATTTCATACATTGGCATCGATATA
TGACTCTGATATAAGTGTGAGAGTAAGACCACGTTTAATACATTGGC
Found at i:59068063 original size:56 final size:56
Alignment explanation
Indices: 59067803--59068065 Score: 303
Period size: 56 Copynumber: 4.7 Consensus size: 56
59067793 TATATGTGGA
* * * *
59067803 ATCGATATGTGACTCTGACATATGTGTGCGAGTAAGTCCACGTTTCATACGTTGGC
1 ATCGATATGTGACTCTGATATATGTGTGCGAGTAAGACCACGTTTAATACATTGGC
* * * * ***
59067859 ATCGATATATGACTCTGATATAAGTGTGAGAGTAA-ATCCATGTTTAATGTGTTGGC
1 ATCGATATGTGACTCTGATATATGTGTGCGAGTAAGA-CCACGTTTAATACATTGGC
* * * * * * *
59067915 ATTGATATGTGATTCCGATATATGTGTGCGAATAAGTCCACATTTCATACATTGGC
1 ATCGATATGTGACTCTGATATATGTGTGCGAGTAAGACCACGTTTAATACATTGGC
*
59067971 ATCGATATGTGACTCTGATATATGTGTGCAAGTAAGACCACGTTTAATACATTGGC
1 ATCGATATGTGACTCTGATATATGTGTGCGAGTAAGACCACGTTTAATACATTGGC
* * * *
59068027 ATCCATATGTGATTTTGATATATGTGTACGAGTAAGACC
1 ATCGATATGTGACTCTGATATATGTGTGCGAGTAAGACC
59068066 TTGTATGAGG
Statistics
Matches: 169, Mismatches: 36, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
56 169 1.00
ACGTcount: A:0.29, C:0.15, G:0.22, T:0.34
Consensus pattern (56 bp):
ATCGATATGTGACTCTGATATATGTGTGCGAGTAAGACCACGTTTAATACATTGGC
Found at i:59075073 original size:5 final size:5
Alignment explanation
Indices: 59075063--59075093 Score: 62
Period size: 5 Copynumber: 6.2 Consensus size: 5
59075053 TTTTTCTTAC
59075063 AATTT AATTT AATTT AATTT AATTT AATTT A
1 AATTT AATTT AATTT AATTT AATTT AATTT A
59075094 TTATTATTAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 26 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (5 bp):
AATTT
Found at i:59082243 original size:13 final size:13
Alignment explanation
Indices: 59082225--59082251 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
59082215 GAAGTAATTG
59082225 CACACGGGCATGT
1 CACACGGGCATGT
59082238 CACACGGGCATGT
1 CACACGGGCATGT
59082251 C
1 C
59082252 CCTGCCAAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.33, G:0.30, T:0.15
Consensus pattern (13 bp):
CACACGGGCATGT
Done.