Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 185 of 349
Found at i:59970586 original size:120 final size:113
Alignment explanation
Indices: 59970411--59970645 Score: 362
Period size: 120 Copynumber: 2.0 Consensus size: 113
59970401 TAAGGCCTAA
*
59970411 TGGCTGATGTGATGAATGTGAAAGTGTATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTG
1 TGGCCGATGTGATGAATGTGAAAGTGTATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTG
*
59970476 AAAGTGTATATATGTGATAAGGCCTAATGGCCGGTGTGATGAATGTGAAAG
66 AAAGTGTATATATGTG-T-AGGCCTAATGGCC-GAGTGATGAATGTGAAAG
* *
59970527 TGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCTGATGTGATGAA
1 TGGCCGATGTGATGAATGTGAAAGTG----TATATGTGATAAGGCCTAATAGCCGATGTGATGAA
*
59970592 TGTGAAAGTGTATATATGTGTAGGCCTAATTGCCGAGTGATGAATGTGAAAG
62 TGTGAAAGTGTATATATGTGTAGGCCTAATGGCCGAGTGATGAATGTGAAAG
59970644 TG
1 TG
59970646 TATATATGTG
Statistics
Matches: 110, Mismatches: 5, Indels: 7
0.90 0.04 0.06
Matches are distributed among these distances:
116 25 0.23
117 19 0.17
118 12 0.11
119 1 0.01
120 53 0.48
ACGTcount: A:0.31, C:0.08, G:0.31, T:0.30
Consensus pattern (113 bp):
TGGCCGATGTGATGAATGTGAAAGTGTATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTG
AAAGTGTATATATGTGTAGGCCTAATGGCCGAGTGATGAATGTGAAAG
Found at i:60023641 original size:27 final size:27
Alignment explanation
Indices: 60023582--60023733 Score: 223
Period size: 27 Copynumber: 5.6 Consensus size: 27
60023572 TAAATTGTAC
*
60023582 AGCACTAAGTGTGCGAGTTGGACTATGT
1 AGCACTAAGTGTGCGAATT-GACTATGT
60023610 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
60023637 TGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
60023664 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGA-ATTGACTATGT
* *
60023692 AGCACTAAGTGTGCGAGTTGACTATAT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
60023719 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
60023734 GACTTAATAT
Statistics
Matches: 114, Mismatches: 9, Indels: 3
0.90 0.07 0.02
Matches are distributed among these distances:
27 71 0.62
28 43 0.38
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAATTGACTATGT
Found at i:60023648 original size:55 final size:55
Alignment explanation
Indices: 60023582--60023733 Score: 234
Period size: 55 Copynumber: 2.8 Consensus size: 55
60023572 TAAATTGTAC
60023582 AGCACTAAGTGTGCGAGTTGGACTATGTAGCACTAAGTGTGCGA-ATTGACTATGT
1 AGCACTAAGTGTGCGAGTT-GACTATGTAGCACTAAGTGTGCGAGATTGACTATGT
* * * *
60023637 TGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGATTGACTATGT
* *
60023692 AGCACTAAGTGTGCGAGTTGACTATATAGCACTGAGTGTGCG
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCG
60023734 GACTTAATAT
Statistics
Matches: 88, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
54 24 0.27
55 64 0.73
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.30
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGATTGACTATGT
Found at i:60023696 original size:82 final size:82
Alignment explanation
Indices: 60023582--60023733 Score: 250
Period size: 82 Copynumber: 1.9 Consensus size: 82
60023572 TAAATTGTAC
* *
60023582 AGCACTAAGTGTGCGAGTTGGACTATGTAGCACTAAGTGTGCGAATTGACTATGTTGCACTAAGT
1 AGCACTAAGTGTGCGAGTTGGACTATGTAGCACTAAGTGTGCGAATTGACTATATAGCACTAAGT
60023647 GTGCGAATTGACTATGT
66 GTGCGAATTGACTATGT
* * * *
60023664 AGCACTAAGTGTGCGAGTTTGATTATGTAGCACTAAGTGTGCGAGTTGACTATATAGCACTGAGT
1 AGCACTAAGTGTGCGAGTTGGACTATGTAGCACTAAGTGTGCGAATTGACTATATAGCACTAAGT
60023729 GTGCG
66 GTGCG
60023734 GACTTAATAT
Statistics
Matches: 64, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
82 64 1.00
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.30
Consensus pattern (82 bp):
AGCACTAAGTGTGCGAGTTGGACTATGTAGCACTAAGTGTGCGAATTGACTATATAGCACTAAGT
GTGCGAATTGACTATGT
Found at i:60035438 original size:13 final size:13
Alignment explanation
Indices: 60035420--60035444 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
60035410 TAATTTATAT
60035420 GTGTGAAAATTTC
1 GTGTGAAAATTTC
60035433 GTGTGAAAATTT
1 GTGTGAAAATTT
60035445 TATTGTTTGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.04, G:0.24, T:0.40
Consensus pattern (13 bp):
GTGTGAAAATTTC
Found at i:60037239 original size:46 final size:46
Alignment explanation
Indices: 60037144--60037355 Score: 200
Period size: 46 Copynumber: 4.6 Consensus size: 46
60037134 ATGCCGATTC
* * *
60037144 CATGTCCCAGACATGGTCTTACACT-G-ACACATCTTGTA-GCCGATG
1 CATGTCCCAGACAT-GTCTTACACTGGCTCTCATCTCG-AGGCCGATG
*
60037189 CATGTCCCAGACATGTCTTACACTGGCT-TACATCTCGAGGCTGATG
1 CATGTCCCAGACATGTCTTACACTGGCTCT-CATCTCGAGGCCGATG
* * * * * *
60037235 CATGTCCCAAACATGTCTTACATTAGCTCTCATCTCAATGCTGATG
1 CATGTCCCAGACATGTCTTACACTGGCTCTCATCTCGAGGCCGATG
* * * *
60037281 CCATGTCCCAGACATGGTCTTACACTGGCTCTTATAAT-GTGGCCAATG
1 -CATGTCCCAGACAT-GTCTTACACTGGCTCTCAT-CTCGAGGCCGATG
*
60037329 CATGTCCCAGACATATCTTACACTGGC
1 CATGTCCCAGACATGTCTTACACTGGC
60037356 ACACAAATAA
Statistics
Matches: 139, Mismatches: 20, Indels: 15
0.80 0.11 0.09
Matches are distributed among these distances:
44 10 0.07
45 16 0.12
46 63 0.45
47 28 0.20
48 21 0.15
49 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTGGCTCTCATCTCGAGGCCGATG
Found at i:60040702 original size:27 final size:27
Alignment explanation
Indices: 60040628--60040770 Score: 110
Period size: 27 Copynumber: 5.3 Consensus size: 27
60040618 CAAAATAGTC
* * * * *
60040628 ATTTTACCCTACAGGGGTATGTCAGTC
1 ATTTTACACTACAAGGGTATTTCGGTA
*
60040655 ATTTTATACTACAAGGGTATTTCGGTA
1 ATTTTACACTACAAGGGTATTTCGGTA
* *
60040682 ATTTTACACTACAAGGGTATTTAGATA
1 ATTTTACACTACAAGGGTATTTCGGTA
* * * *
60040709 ATTTTACA-AATCGAGGGTGTTTCAGTA
1 ATTTTACACTA-CAAGGGTATTTCGGTA
* ** *
60040736 ATTTTACA-AATTGAGGGTATTTCGATA
1 ATTTTACACTA-CAAGGGTATTTCGGTA
60040763 ATTTTACA
1 ATTTTACA
60040771 AATTGTTTAC
Statistics
Matches: 96, Mismatches: 19, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
26 1 0.01
27 95 0.99
ACGTcount: A:0.31, C:0.13, G:0.18, T:0.38
Consensus pattern (27 bp):
ATTTTACACTACAAGGGTATTTCGGTA
Found at i:60040726 original size:54 final size:54
Alignment explanation
Indices: 60040668--60041152 Score: 371
Period size: 54 Copynumber: 8.8 Consensus size: 54
60040658 TTATACTACA
*
60040668 AGGGTATTTCGGTAATTTTAC-ACTACAAGGGTATTTAGATAATTTTACAAATCG
1 AGGGTATTTCGGTAATTTTACAAAT-CAAGGGTATTTAGATAATTTTACAAATCG
* * ** * *
60040722 AGGGTGTTTCAGTAATTTTACAAATTGAGGGTATTTCGATAATTTTACAAATTGTTTACAAATCA
1 AGGGTATTTCGGTAATTTTACAAATCAAGGGTATTT--A-GA---T---AA-T-TTTACAAATCG
* * * *
60040787 AGGGTGTTTCGGTAATTTCACAAATCGAGGGTATTTTAG-TAATTTTACAAATCA
1 AGGGTATTTCGGTAATTTTACAAATCAAGGGTA-TTTAGATAATTTTACAAATCG
** * * * *
60040841 AGGGTATTTAAGAAATTTTAC-AATTAAGGGTATTTTAG-TAATTTTAGAAAT-T
1 AGGGTATTTCGGTAATTTTACAAATCAAGGGTA-TTTAGATAATTTTACAAATCG
* * * *
60040893 AGGGATATTTCGATAATTTTACAAATCGAA-GGTGTTTCGATAATTTTATAAATCG
1 AGGG-TATTTCGGTAATTTTACAAATC-AAGGGTATTTAGATAATTTTACAAATCG
* * *
60040948 AAGGTATTTCGATAATTTTACAAATCGAAGGTGT-TTCA-ATAATTTTACAAATCG
1 AGGGTATTTCGGTAATTTTACAAATC-AAGG-GTATTTAGATAATTTTACAAATCG
* * * * * * *
60041002 AGGGTGTTTTGATAA-TTTACAAATCGAGGATATTTCGATAATTTTACAAATTG
1 AGGGTATTTCGGTAATTTTACAAATCAAGGGTATTTAGATAATTTTACAAATCG
* * * * * * *
60041055 GGGGTATTTCGATAATTTCAC-AATCGAGGGTATTTCGGTAATTTTACAAATCA
1 AGGGTATTTCGGTAATTTTACAAATCAAGGGTATTTAGATAATTTTACAAATCG
*
60041108 AGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTTAG-TAATTT
1 AGGGTATTTCGGTAATTTTACAAATCAAGGGTA-TTTAGATAATTT
60041153 ATCATTATTA
Statistics
Matches: 353, Mismatches: 53, Indels: 50
0.77 0.12 0.11
Matches are distributed among these distances:
51 1 0.00
52 9 0.03
53 127 0.36
54 146 0.41
55 15 0.04
56 5 0.01
57 1 0.00
59 1 0.00
60 1 0.00
63 2 0.01
64 2 0.01
65 40 0.11
66 3 0.01
ACGTcount: A:0.34, C:0.09, G:0.19, T:0.39
Consensus pattern (54 bp):
AGGGTATTTCGGTAATTTTACAAATCAAGGGTATTTAGATAATTTTACAAATCG
Found at i:60040775 original size:27 final size:27
Alignment explanation
Indices: 60040668--60040773 Score: 126
Period size: 27 Copynumber: 3.9 Consensus size: 27
60040658 TTATACTACA
* * *
60040668 AGGGTATTTCGGTAATTTTAC-ACTACA
1 AGGGTATTTCGATAATTTTACAAAT-CG
*
60040695 AGGGTATTTAGATAATTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
* *
60040722 AGGGTGTTTC-AGTAATTTTACAAATTG
1 AGGGTATTTCGA-TAATTTTACAAATCG
60040749 AGGGTATTTCGATAATTTTACAAAT
1 AGGGTATTTCGATAATTTTACAAAT
60040774 TGTTTACAAA
Statistics
Matches: 68, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
26 1 0.01
27 64 0.94
28 3 0.04
ACGTcount: A:0.33, C:0.09, G:0.19, T:0.39
Consensus pattern (27 bp):
AGGGTATTTCGATAATTTTACAAATCG
Found at i:60040791 original size:38 final size:38
Alignment explanation
Indices: 60040738--60040811 Score: 103
Period size: 38 Copynumber: 1.9 Consensus size: 38
60040728 TTTCAGTAAT
** *
60040738 TTTACAAATTGAGGGTATTTCGATAATTTTACAAATTG
1 TTTACAAATCAAGGGTATTTCGATAATTTCACAAATTG
* *
60040776 TTTACAAATCAAGGGTGTTTCGGTAATTTCACAAAT
1 TTTACAAATCAAGGGTATTTCGATAATTTCACAAAT
60040812 CGAGGGTATT
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
38 31 1.00
ACGTcount: A:0.34, C:0.11, G:0.16, T:0.39
Consensus pattern (38 bp):
TTTACAAATCAAGGGTATTTCGATAATTTCACAAATTG
Found at i:60040811 original size:27 final size:27
Alignment explanation
Indices: 60040776--60041143 Score: 360
Period size: 27 Copynumber: 13.7 Consensus size: 27
60040766 TTACAAATTG
* *
60040776 TTTACAAATCAAGGGTGTTTCGGTAAT
1 TTTACAAATCAAGGGTATTTCGATAAT
* * *
60040803 TTCACAAATCGAGGGTATTT-TAGTAAT
1 TTTACAAATCAAGGGTATTTCGA-TAAT
*
60040830 TTTACAAATCAAGGGTATTTAAGA-AAT
1 TTTACAAATCAAGGGTATTT-CGATAAT
* *
60040857 TTTAC-AATTAAGGGTATTT-TAGTAAT
1 TTTACAAATCAAGGGTATTTCGA-TAAT
* *
60040883 TTTAGAAAT-TAGGGATATTTCGATAAT
1 TTTACAAATCAAGGG-TATTTCGATAAT
*
60040910 TTTACAAATCGAA-GGTGTTTCGATAAT
1 TTTACAAATC-AAGGGTATTTCGATAAT
*
60040937 TTTATAAATCGAA-GGTATTTCGATAAT
1 TTTACAAATC-AAGGGTATTTCGATAAT
* *
60040964 TTTACAAATCGAA-GGTGTTTCAATAAT
1 TTTACAAATC-AAGGGTATTTCGATAAT
* * *
60040991 TTTACAAATCGAGGGTGTTTTGATAA-
1 TTTACAAATCAAGGGTATTTCGATAAT
* *
60041017 TTTACAAATCGAGGATATTTCGATAAT
1 TTTACAAATCAAGGGTATTTCGATAAT
***
60041044 TTTACAAATTGGGGGTATTTCGATAAT
1 TTTACAAATCAAGGGTATTTCGATAAT
* * *
60041071 TTCAC-AATCGAGGGTATTTCGGTAAT
1 TTTACAAATCAAGGGTATTTCGATAAT
*
60041097 TTTACAAATCAAGGGTATTTCGGTAAT
1 TTTACAAATCAAGGGTATTTCGATAAT
*
60041124 TTTACAAATCGAGGGTATTT
1 TTTACAAATCAAGGGTATTT
60041144 TAGTAATTTA
Statistics
Matches: 291, Mismatches: 37, Indels: 26
0.82 0.10 0.07
Matches are distributed among these distances:
24 1 0.00
26 70 0.24
27 215 0.74
28 3 0.01
29 2 0.01
ACGTcount: A:0.34, C:0.09, G:0.18, T:0.38
Consensus pattern (27 bp):
TTTACAAATCAAGGGTATTTCGATAAT
Found at i:60040817 original size:65 final size:65
Alignment explanation
Indices: 60040711--60040838 Score: 195
Period size: 65 Copynumber: 2.0 Consensus size: 65
60040701 TTTAGATAAT
* * *
60040711 TTTACAAATCGAGGGTGTTTCAGTAATTTTACAAATTGAGGGTATTTCGA-TAATTTTACAAATT
1 TTTACAAATCAAGGGTGTTTCAGTAATTTCACAAATCGAGGGTATTT-GAGTAATTTTACAAATT
60040775 G
65 G
* *
60040776 TTTACAAATCAAGGGTGTTTCGGTAATTTCACAAATCGAGGGTATTTTAGTAATTTTACAAAT
1 TTTACAAATCAAGGGTGTTTCAGTAATTTCACAAATCGAGGGTATTTGAGTAATTTTACAAAT
60040839 CAAGGGTATT
Statistics
Matches: 57, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
64 1 0.02
65 56 0.98
ACGTcount: A:0.33, C:0.10, G:0.18, T:0.39
Consensus pattern (65 bp):
TTTACAAATCAAGGGTGTTTCAGTAATTTCACAAATCGAGGGTATTTGAGTAATTTTACAAATTG
Found at i:60040845 original size:92 final size:92
Alignment explanation
Indices: 60040693--60040863 Score: 245
Period size: 92 Copynumber: 1.9 Consensus size: 92
60040683 TTTTACACTA
* * **
60040693 CAAGGGTATTTAGATAATTTTACAAATCGAGGGTGTTTCAGTAATTTTACAAATTGAGGGTATTT
1 CAAGGGTATTTAGATAATTTCACAAATCGAGGGTATTTCAGTAATTTTACAAATCAAGGGTATTT
*
60040758 -CGATAATTTTACAAATTGTTTACAAAT
66 AAGA-AATTTTACAAATTGTTTACAAAT
* * * *
60040785 CAAGGGTGTTTCGGTAATTTCACAAATCGAGGGTATTTTAGTAATTTTACAAATCAAGGGTATTT
1 CAAGGGTATTTAGATAATTTCACAAATCGAGGGTATTTCAGTAATTTTACAAATCAAGGGTATTT
60040850 AAGAAATTTTACAA
66 AAGAAATTTTACAA
60040864 TTAAGGGTAT
Statistics
Matches: 69, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
92 67 0.97
93 2 0.03
ACGTcount: A:0.35, C:0.09, G:0.18, T:0.37
Consensus pattern (92 bp):
CAAGGGTATTTAGATAATTTCACAAATCGAGGGTATTTCAGTAATTTTACAAATCAAGGGTATTT
AAGAAATTTTACAAATTGTTTACAAAT
Found at i:60040869 original size:26 final size:26
Alignment explanation
Indices: 60040814--60040916 Score: 102
Period size: 26 Copynumber: 3.9 Consensus size: 26
60040804 TCACAAATCG
* *
60040814 AGGGTATTTTAGTAATTTTACAAATCA
1 AGGGTATTTTAGAAATTTTAC-AATTA
*
60040841 AGGGTATTTAAGAAATTTTACAATTA
1 AGGGTATTTTAGAAATTTTACAATTA
* *
60040867 AGGGTATTTTAGTAATTTTAGAAATT-
1 AGGGTATTTTAGAAATTTTA-CAATTA
*
60040893 AGGG-ATATTTCGATAATTTTACAA
1 AGGGTAT-TTTAGA-AATTTTACAA
60040917 ATCGAAGGTG
Statistics
Matches: 64, Mismatches: 9, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
25 2 0.03
26 32 0.50
27 30 0.47
ACGTcount: A:0.38, C:0.05, G:0.17, T:0.41
Consensus pattern (26 bp):
AGGGTATTTTAGAAATTTTACAATTA
Found at i:60041151 original size:80 final size:81
Alignment explanation
Indices: 60040776--60041152 Score: 401
Period size: 80 Copynumber: 4.7 Consensus size: 81
60040766 TTACAAATTG
* * *
60040776 TTTACAAATCAAGGGTGTTTCGGTAATTTCACAAATCGAGGGTATTTTAGTAATTTTACAAATCA
1 TTTACAAATCAAGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTTAGTAATTTTACAAATCG
*
60040841 AGGGTATTTAAGA-AAT
66 AGGGTATTT-CGATAAT
* ** * * *
60040857 TTTAC-AATTAAGGGTATTTTAGTAATTTTAGAAAT-TAGGG-ATATTTCGATAATTTTACAAAT
1 TTTACAAATCAAGGGTATTTCGGTAATTTTACAAATCGAGGGTAT-TTTAG-TAATTTTACAAAT
* *
60040919 CGAAGGTGTTTCGATAAT
64 CGAGGGTATTTCGATAAT
* * * * * *
60040937 TTTATAAATCGAA-GGTATTTCGATAATTTTACAAATCGAAGGTGTTTCAATAATTTTACAAATC
1 TTTACAAATC-AAGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTTAGTAATTTTACAAATC
* *
60041001 GAGGGTGTTTTGATAA-
65 GAGGGTATTTCGATAAT
* * * * * * *
60041017 TTTACAAATCGAGGATATTTCGATAATTTTACAAATTGGGGGTA-TTTCGATAATTTCAC-AATC
1 TTTACAAATCAAGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTTAG-TAATTTTACAAATC
*
60041080 GAGGGTATTTCGGTAAT
65 GAGGGTATTTCGATAAT
60041097 TTTACAAATCAAGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTTAGTAATTT
1 TTTACAAATCAAGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTTAGTAATTT
60041153 ATCATTATTA
Statistics
Matches: 239, Mismatches: 46, Indels: 23
0.78 0.15 0.07
Matches are distributed among these distances:
78 2 0.01
79 30 0.13
80 140 0.59
81 59 0.25
82 7 0.03
83 1 0.00
ACGTcount: A:0.34, C:0.09, G:0.18, T:0.39
Consensus pattern (81 bp):
TTTACAAATCAAGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTTAGTAATTTTACAAATCG
AGGGTATTTCGATAAT
Found at i:60041530 original size:29 final size:29
Alignment explanation
Indices: 60041444--60041552 Score: 136
Period size: 29 Copynumber: 3.9 Consensus size: 29
60041434 AAGTCTACAT
* *
60041444 ACATGCATATGGCCCACTAGGCCC--A-C
1 ACATTCATATGGCCCATTAGGCCCAAATC
*
60041470 TCATTCATATGGCCCATT-GGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
*
60041498 ACATTCGTATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
**
60041527 ACATTCATATGGCCCATCGGGCCCAA
1 ACATTCATATGGCCCATTAGGCCCAA
60041553 CTACTTCCCA
Statistics
Matches: 71, Mismatches: 8, Indels: 5
0.85 0.10 0.06
Matches are distributed among these distances:
25 5 0.07
26 15 0.21
27 1 0.01
28 17 0.24
29 33 0.46
ACGTcount: A:0.27, C:0.34, G:0.17, T:0.22
Consensus pattern (29 bp):
ACATTCATATGGCCCATTAGGCCCAAATC
Found at i:60047988 original size:48 final size:45
Alignment explanation
Indices: 60047906--60048031 Score: 139
Period size: 47 Copynumber: 2.7 Consensus size: 45
60047896 ATCTCGAGGT
* * *
60047906 TGATGCATGTCCCAGGCATGTCTTACATTAGCTCTCATCTCAAT-T-C
1 TGATGCATGTCCCAGACATGTCTTACACTGGCTCTCA--T-AATGTGC
*
60047952 TGATGCCATTTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGC
1 TGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTCATAATGT-GC
*
60048000 CGATGCATGTCCCAGACATGTCTTACACTGGC
1 TGATGCATGTCCCAGACATGTCTTACACTGGC
60048032 ATACAAATAA
Statistics
Matches: 69, Mismatches: 6, Indels: 10
0.81 0.07 0.12
Matches are distributed among these distances:
45 3 0.04
46 20 0.29
47 25 0.36
48 21 0.30
ACGTcount: A:0.21, C:0.29, G:0.19, T:0.31
Consensus pattern (45 bp):
TGATGCATGTCCCAGACATGTCTTACACTGGCTCTCATAATGTGC
Found at i:60057069 original size:43 final size:42
Alignment explanation
Indices: 60057000--60057158 Score: 144
Period size: 43 Copynumber: 3.7 Consensus size: 42
60056990 AGCATATACA
* *
60057000 ATGCCAACGTCCCAGAC-GTGGTCTTACATGTAATCAAACATCG
1 ATGCCAATGTCCCAGACAG-GGTCTTACACGTAATCAAACA-CG
* * * *
60057043 ATGTCACTGTCCCAGACAGGGTCTTACACGAAATCAAATACG
1 ATGCCAATGTCCCAGACAGGGTCTTACACGTAATCAAACACG
* * * *
60057085 ATGCCAATGTCCTAGACATGGTCTTACACGTAAAACAAA-AGTCA
1 ATGCCAATGTCCCAGACAGGGTCTTACACGT-AATCAAACA--CG
*
60057129 ATGCCAACGTCCCAGAC-GTGGTCTTACACG
1 ATGCCAATGTCCCAGACAG-GGTCTTACACG
60057159 ATATCACATA
Statistics
Matches: 95, Mismatches: 16, Indels: 9
0.79 0.13 0.08
Matches are distributed among these distances:
42 29 0.31
43 38 0.40
44 28 0.29
ACGTcount: A:0.32, C:0.27, G:0.19, T:0.22
Consensus pattern (42 bp):
ATGCCAATGTCCCAGACAGGGTCTTACACGTAATCAAACACG
Found at i:60057155 original size:86 final size:85
Alignment explanation
Indices: 60056995--60057164 Score: 202
Period size: 86 Copynumber: 2.0 Consensus size: 85
60056985 CGGAAAGCAT
* * * * *
60056995 ATACAATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAAACATCGATGTCACTGTCCCAGAC
1 ATACAATGCCAACGTCCCAGACATGGTCTTACACGTAAACAAACATCAATGCCACTGTCCCAGAC
60057060 AGGGTCTTACACGAAATCAA
66 AGGGTCTTACACGAAATCAA
* * *
60057080 ATACGATGCCAATGTCCTAGACATGGTCTTACACGTAAAACAAA-AGTCAATGCCAAC-GTCCCA
1 ATACAATGCCAACGTCCCAGACATGGTCTTACACGT-AAACAAACA-TCAATGCC-ACTGTCCCA
*
60057143 GAC-GTGGTCTTACACGATATCA
63 GACAG-GGTCTTACACGAAATCA
60057165 CATATCGAAA
Statistics
Matches: 72, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
85 33 0.46
86 37 0.51
87 2 0.03
ACGTcount: A:0.34, C:0.26, G:0.18, T:0.22
Consensus pattern (85 bp):
ATACAATGCCAACGTCCCAGACATGGTCTTACACGTAAACAAACATCAATGCCACTGTCCCAGAC
AGGGTCTTACACGAAATCAA
Found at i:60062531 original size:28 final size:27
Alignment explanation
Indices: 60062476--60062564 Score: 117
Period size: 28 Copynumber: 3.3 Consensus size: 27
60062466 AGCATGGCTG
* * *
60062476 CCAGAACAGATA-TTGTGACAGAGTCA
1 CCAGAACAGATATTTGTGGCATAGCCA
60062502 CCAGATACAGATATTTGTGGCATAGCCA
1 CCAGA-ACAGATATTTGTGGCATAGCCA
*
60062530 CCAGAAATAGATATTTGTGGCATAGCCA
1 CCAG-AACAGATATTTGTGGCATAGCCA
60062558 CCAGAAC
1 CCAGAAC
60062565 GCTTCCTCCA
Statistics
Matches: 55, Mismatches: 5, Indels: 5
0.85 0.08 0.08
Matches are distributed among these distances:
26 5 0.09
27 9 0.16
28 40 0.73
29 1 0.02
ACGTcount: A:0.36, C:0.21, G:0.21, T:0.21
Consensus pattern (27 bp):
CCAGAACAGATATTTGTGGCATAGCCA
Found at i:60062695 original size:26 final size:27
Alignment explanation
Indices: 60062666--60062729 Score: 94
Period size: 26 Copynumber: 2.4 Consensus size: 27
60062656 CAAAATTAAC
60062666 CCTAGGGGTATAATGGTAATTTTT-CA
1 CCTAGGGGTATAATGGTAATTTTTACA
* *
60062692 CCTAGGGGTAAAATGGTAATTTTTATA
1 CCTAGGGGTATAATGGTAATTTTTACA
*
60062719 CTTAGGGGTAT
1 CCTAGGGGTAT
60062730 TTTAGTAAAT
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
26 23 0.70
27 10 0.30
ACGTcount: A:0.28, C:0.09, G:0.25, T:0.38
Consensus pattern (27 bp):
CCTAGGGGTATAATGGTAATTTTTACA
Found at i:60069899 original size:10 final size:10
Alignment explanation
Indices: 60069886--60069921 Score: 63
Period size: 10 Copynumber: 3.6 Consensus size: 10
60069876 AACAAAACAT
*
60069886 ATTAAAAGTA
1 ATTAAAAATA
60069896 ATTAAAAATA
1 ATTAAAAATA
60069906 ATTAAAAATA
1 ATTAAAAATA
60069916 ATTAAA
1 ATTAAA
60069922 GCGGCCTTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
10 25 1.00
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.31
Consensus pattern (10 bp):
ATTAAAAATA
Found at i:60070412 original size:28 final size:28
Alignment explanation
Indices: 60070374--60070436 Score: 99
Period size: 28 Copynumber: 2.2 Consensus size: 28
60070364 TGACAGAGTT
*
60070374 ACCAGATACAGATATTTATGGAATAGCC
1 ACCAGAAACAGATATTTATGGAATAGCC
* *
60070402 ACCAGAAACAGATATTTGTGGCATAGCC
1 ACCAGAAACAGATATTTATGGAATAGCC
60070430 ACCAGAA
1 ACCAGAA
60070437 CGCTTCCTCC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.40, C:0.21, G:0.19, T:0.21
Consensus pattern (28 bp):
ACCAGAAACAGATATTTATGGAATAGCC
Found at i:60070569 original size:26 final size:26
Alignment explanation
Indices: 60070540--60070601 Score: 83
Period size: 25 Copynumber: 2.4 Consensus size: 26
60070530 AAAATTAACC
60070540 CTAGGGGTATAATGGTAATTTTGCAT-
1 CTAGGGGTATAATGGTAATTTT-CATA
*
60070566 CTA-GGGTAAAATGGTAATTTTCATA
1 CTAGGGGTATAATGGTAATTTTCATA
60070591 CTTAGGGGTAT
1 C-TAGGGGTAT
60070602 TTTATTAAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
24 3 0.10
25 18 0.58
26 5 0.16
27 5 0.16
ACGTcount: A:0.29, C:0.08, G:0.26, T:0.37
Consensus pattern (26 bp):
CTAGGGGTATAATGGTAATTTTCATA
Found at i:60090110 original size:11 final size:11
Alignment explanation
Indices: 60090094--60090118 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
60090084 TAGGACCTCA
60090094 ATTCACTCTTC
1 ATTCACTCTTC
60090105 ATTCACTCTTC
1 ATTCACTCTTC
60090116 ATT
1 ATT
60090119 TCTTCTTCAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.20, C:0.32, G:0.00, T:0.48
Consensus pattern (11 bp):
ATTCACTCTTC
Found at i:60094277 original size:25 final size:25
Alignment explanation
Indices: 60094249--60094305 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 25
60094239 TAGTTTCTTG
* *
60094249 AAATTTAATAGGGGCAAAATTGTCA
1 AAATTTAACAGGGGCAAAATCGTCA
* *
60094274 AAATTTTACCAGGGGTAAAATCGTCA
1 AAA-TTTAACAGGGGCAAAATCGTCA
60094300 AAATTT
1 AAATTT
60094306 TGTTGGGGGT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
25 6 0.22
26 21 0.78
ACGTcount: A:0.42, C:0.11, G:0.18, T:0.30
Consensus pattern (25 bp):
AAATTTAACAGGGGCAAAATCGTCA
Found at i:60100019 original size:39 final size:39
Alignment explanation
Indices: 60099965--60100090 Score: 189
Period size: 39 Copynumber: 3.2 Consensus size: 39
60099955 TTCAGTGATG
*
60099965 TATATCCGAACTTAGGGTCCGCAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
* *
60100004 TATATCCGGACTTAGGGTCCGCAGGCTATGTACTAGAAT
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
* * *
60100043 TATATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAA
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
*
60100082 TATGTCCGG
1 TATATCCGG
60100091 GCTAAAGTCC
Statistics
Matches: 78, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 78 1.00
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (39 bp):
TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
Found at i:60100104 original size:39 final size:39
Alignment explanation
Indices: 60099965--60100124 Score: 178
Period size: 39 Copynumber: 4.1 Consensus size: 39
60099955 TTCAGTGATG
* * *
60099965 TATATCCGAACTTAGGGTCCGCAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAT
* * * *
60100004 TATATCCGGACTTAGGGTCCGCAGGCTATGTACTAGAAT
1 TATATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAT
*
60100043 TATATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAA
1 TATATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAT
* * * * * *
60100082 TATGTCCGGGC-TAAAGTCCCGCAGGCTTCGAGCTGGTAT
1 TATATCCGGACTTAAGGT-CCGCAGGCTACGTGCTGGAAT
60100121 TATA
1 TATA
60100125 CCAGGTTTAA
Statistics
Matches: 104, Mismatches: 16, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
38 5 0.05
39 99 0.95
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.27
Consensus pattern (39 bp):
TATATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAT
Found at i:60100124 original size:78 final size:78
Alignment explanation
Indices: 60099965--60100108 Score: 200
Period size: 78 Copynumber: 1.8 Consensus size: 78
60099955 TTCAGTGATG
* * * **
60099965 TATATCCGAACTTAGGGTCCGCAGGCTATGTGCTGGAATTATATCCGGACTTAGGGTCCGCAGGC
1 TATATCCGAACTTAAGGTCCGCAGGCTACGTGCTGGAAATATATCCGGACTTAAAGTCCGCAGGC
60100030 TATGTACTAGAAT
66 TATGTACTAGAAT
* * *
60100043 TATATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAATATGTCCGGGC-TAAAGTCCCGCAGG
1 TATATCCGAACTTAAGGTCCGCAGGCTACGTGCTGGAAATATATCCGGACTTAAAGT-CCGCAGG
60100107 CT
65 CT
60100109 TCGAGCTGGT
Statistics
Matches: 57, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
77 4 0.07
78 53 0.93
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.26
Consensus pattern (78 bp):
TATATCCGAACTTAAGGTCCGCAGGCTACGTGCTGGAAATATATCCGGACTTAAAGTCCGCAGGC
TATGTACTAGAAT
Found at i:60101452 original size:24 final size:21
Alignment explanation
Indices: 60101386--60101460 Score: 84
Period size: 20 Copynumber: 3.6 Consensus size: 21
60101376 AACATAAGCT
* *
60101386 TTAATTAAAAT-AAG-TTAAG
1 TTAATTAAACTAAAGATTATG
60101405 TTAATTAAA-TAAAGATTATG
1 TTAATTAAACTAAAGATTATG
60101425 TTAATTAAACTAAATTGATTATG
1 TTAATTAAACTAAA--GATTATG
60101448 CTTAATTAAACTA
1 -TTAATTAAACTA
60101461 TATATAGTTT
Statistics
Matches: 49, Mismatches: 1, Indels: 7
0.86 0.02 0.12
Matches are distributed among these distances:
18 1 0.02
19 12 0.24
20 13 0.27
21 4 0.08
23 7 0.14
24 12 0.24
ACGTcount: A:0.48, C:0.04, G:0.08, T:0.40
Consensus pattern (21 bp):
TTAATTAAACTAAAGATTATG
Found at i:60102910 original size:20 final size:20
Alignment explanation
Indices: 60102864--60102910 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
60102854 AGCTCGTTTC
*
60102864 CAGCTCACTCGAGCTCAAGT
1 CAGCTCACTCAAGCTCAAGT
* *
60102884 CAACTCACTCAAGCTCAATT
1 CAGCTCACTCAAGCTCAAGT
60102904 CAGCTCA
1 CAGCTCA
60102911 ATCTTAACCC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.30, C:0.36, G:0.13, T:0.21
Consensus pattern (20 bp):
CAGCTCACTCAAGCTCAAGT
Found at i:60105689 original size:48 final size:47
Alignment explanation
Indices: 60105610--60105715 Score: 135
Period size: 48 Copynumber: 2.2 Consensus size: 47
60105600 GAGTGTCATG
*
60105610 GAAAAAGAAATTGAGATTGAAAAAGGATGTGA-AAAAGAGAAAGAAATC
1 GAAAAAGAAATTGAGATTGAAAAAAGATGTGAGAAAA-AGAAA-AAATC
* *
60105658 GAAAAAGAAATTGAGATTGAACAAAAG-TGTGAGGAAAAAGAGAAAATT
1 GAAAAAGAAATTGAGATTGAA-AAAAGATGTGA-GAAAAAGAAAAAATC
60105706 GAAAAAGAAA
1 GAAAAAGAAA
60105716 GAAAAGACAA
Statistics
Matches: 52, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
48 40 0.77
49 8 0.15
50 4 0.08
ACGTcount: A:0.59, C:0.02, G:0.25, T:0.14
Consensus pattern (47 bp):
GAAAAAGAAATTGAGATTGAAAAAAGATGTGAGAAAAAGAAAAAATC
Found at i:60107429 original size:20 final size:20
Alignment explanation
Indices: 60107383--60107429 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
60107373 AGCTCGTTTC
*
60107383 CAGCTCACTCGAGCTCAAGT
1 CAGCTCACTCAAGCTCAAGT
* *
60107403 CAACTCACTCAAGCTCAATT
1 CAGCTCACTCAAGCTCAAGT
60107423 CAGCTCA
1 CAGCTCA
60107430 ATCTTAACCC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.30, C:0.36, G:0.13, T:0.21
Consensus pattern (20 bp):
CAGCTCACTCAAGCTCAAGT
Found at i:60114175 original size:45 final size:45
Alignment explanation
Indices: 60114125--60114211 Score: 165
Period size: 45 Copynumber: 1.9 Consensus size: 45
60114115 AACATGTGTC
*
60114125 ACATATATCATGAACTCAGACCACAACTCAATGAGTTCAGATGTT
1 ACATATATCATGAACTCAAACCACAACTCAATGAGTTCAGATGTT
60114170 ACATATATCATGAACTCAAACCACAACTCAATGAGTTCAGAT
1 ACATATATCATGAACTCAAACCACAACTCAATGAGTTCAGAT
60114212 TACATAATTC
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.40, C:0.23, G:0.11, T:0.25
Consensus pattern (45 bp):
ACATATATCATGAACTCAAACCACAACTCAATGAGTTCAGATGTT
Found at i:60115921 original size:25 final size:24
Alignment explanation
Indices: 60115882--60115966 Score: 73
Period size: 25 Copynumber: 3.4 Consensus size: 24
60115872 TCCTGTACAT
*
60115882 GTATGCTCA-TACGAGTTGTGAATCA
1 GTATGCTCACT-CGAGTTGT-AATCG
* *
60115907 GTATGCTCACTCGAGCTGTAGATTG
1 GTATGCTCACTCGAGTTGTA-ATCG
* * *
60115932 GTATGCTCTCACGAGTAGTAAATCG
1 GTATGCTCACTCGAGTTGT-AATCG
60115957 GTATGCTCAC
1 GTATGCTCAC
60115967 ACAAGTTATG
Statistics
Matches: 48, Mismatches: 9, Indels: 6
0.76 0.14 0.10
Matches are distributed among these distances:
24 1 0.02
25 45 0.94
26 2 0.04
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.31
Consensus pattern (24 bp):
GTATGCTCACTCGAGTTGTAATCG
Found at i:60116663 original size:21 final size:22
Alignment explanation
Indices: 60116621--60116663 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 22
60116611 TTACAAAAGT
*
60116621 TGTTTATCTAACAACAATCATC
1 TGTTTATCTAACAACAAACATC
* *
60116643 TGTTT-TCTATCATCAAACATC
1 TGTTTATCTAACAACAAACATC
60116664 AAAACTCATG
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.33, C:0.23, G:0.05, T:0.40
Consensus pattern (22 bp):
TGTTTATCTAACAACAAACATC
Found at i:60116901 original size:20 final size:19
Alignment explanation
Indices: 60116873--60116926 Score: 58
Period size: 20 Copynumber: 2.8 Consensus size: 19
60116863 ATGAAGATGA
60116873 TACTAATTTACTTTTAATT
1 TACTAATTTACTTTTAATT
* *
60116892 TACTTAATTTGTCATTT-ATT
1 TAC-TAATTT-ACTTTTAATT
60116912 TACTAA-TTACTTTTA
1 TACTAATTTACTTTTA
60116927 TAACCTTTAA
Statistics
Matches: 28, Mismatches: 4, Indels: 7
0.72 0.10 0.18
Matches are distributed among these distances:
17 4 0.14
18 2 0.07
19 6 0.21
20 12 0.43
21 4 0.14
ACGTcount: A:0.30, C:0.11, G:0.02, T:0.57
Consensus pattern (19 bp):
TACTAATTTACTTTTAATT
Found at i:60119026 original size:44 final size:44
Alignment explanation
Indices: 60118977--60119416 Score: 440
Period size: 44 Copynumber: 10.2 Consensus size: 44
60118967 ACTGATAGCC
* *
60118977 GATTTGGTGTCTCTGTATTGTCAGAGAGCAGATCAAAGATAATA
1 GATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAATA
* *
60119021 GATTTGGCATCTCTGTATTGTCAGAGAGAAGATCGAAGAT-ATCA
1 GATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAAT-A
* * *
60119065 AATTTGGTGTCTCTGTATTGAT-AGA-A--AG--C--AGATAAAA
1 GATTTGGCGTCTCTGTATTG-TCAGAGAGCAGATCGAAGATAATA
* * * ***
60119102 GATTTGGCGTCTCTGTATTTTCAGAGAGTAGATCAAAGATAGCG
1 GATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAATA
* *
60119146 GATTTGGCGTCTCTGTATTGTTAGAGAGCAGATCGAAGATAGCT-
1 GATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATA-ATA
* * * *
60119190 GATTTGGAGTCTCTGTATTGTCAGAAAGTAGATCGAAGATAGCT-
1 GATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATA-ATA
* * * **
60119234 GATTT-GCGTCTCTGTATTGTCAGAGAGCAAATCAAAAATAGCA
1 GATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAATA
* *
60119277 GATTTGGCGTCTCCGTATTGTCAGAGAGTAGATCGAAGAT-ATCA
1 GATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAAT-A
* * *
60119321 GATTTGGCGTCTCTG-ATTGTTAGAGAGCAGATCGAAGATGACA
1 GATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAATA
* * **
60119364 GATTTGGCGTCTCTGTATTATCAGAGAGCAGATCGAAAATAGCA
1 GATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAATA
60119408 GATTTGGCG
1 GATTTGGCG
60119417 AGCAGATCGA
Statistics
Matches: 331, Mismatches: 48, Indels: 34
0.80 0.12 0.08
Matches are distributed among these distances:
36 1 0.00
37 25 0.08
38 2 0.01
39 1 0.00
40 2 0.01
41 2 0.01
42 1 0.00
43 75 0.23
44 221 0.67
45 1 0.00
ACGTcount: A:0.30, C:0.13, G:0.26, T:0.30
Consensus pattern (44 bp):
GATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAATA
Found at i:60119289 original size:87 final size:88
Alignment explanation
Indices: 60119101--60119416 Score: 440
Period size: 87 Copynumber: 3.6 Consensus size: 88
60119091 AGCAGATAAA
* * *
60119101 AGATTTGGCGTCTCTGTATTTTCAGAGAGTAGATCAAAGATAGCGGATTTGGCGTCTCTGTATTG
1 AGATTTGGCGTCTCTGTATTGTCAGAGAGTAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTG
* *
60119166 TTAGAGAGCAGATCGAAGATAGC
66 TCAGAGAGCAGATCAAAGATAGC
* * * *
60119189 TGATTTGGAGTCTCTGTATTGTCAGAAAGTAGATCGAAGATAGCTGATTT-GCGTCTCTGTATTG
1 AGATTTGGCGTCTCTGTATTGTCAGAGAGTAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTG
* *
60119253 TCAGAGAGCAAATCAAAAATAGC
66 TCAGAGAGCAGATCAAAGATAGC
* *
60119276 AGATTTGGCGTCTCCGTATTGTCAGAGAGTAGATCGAAGATATCAGATTTGGCGTCTCTG-ATTG
1 AGATTTGGCGTCTCTGTATTGTCAGAGAGTAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTG
* *
60119340 TTAGAGAGCAGATCGAAGAT-GAC
66 TCAGAGAGCAGATCAAAGATAG-C
* * *
60119363 AGATTTGGCGTCTCTGTATTATCAGAGAGCAGATCGAAAATAGCAGATTTGGCG
1 AGATTTGGCGTCTCTGTATTGTCAGAGAGTAGATCGAAGATAGCAGATTTGGCG
60119417 AGCAGATCGA
Statistics
Matches: 201, Mismatches: 25, Indels: 5
0.87 0.11 0.02
Matches are distributed among these distances:
86 1 0.00
87 147 0.73
88 53 0.26
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (88 bp):
AGATTTGGCGTCTCTGTATTGTCAGAGAGTAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTG
TCAGAGAGCAGATCAAAGATAGC
Found at i:60119295 original size:131 final size:130
Alignment explanation
Indices: 60118970--60119416 Score: 561
Period size: 131 Copynumber: 3.5 Consensus size: 130
60118960 GTAGATCACT
* * ** *
60118970 GATAGCCGATTTGGTGTCTCTGTATTGTCAGAGAGCAGATCAAAGATAATAGATTTGGCATCTCT
1 GATAG-CGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCAAAAATAGCAGATTTGGCGTCTCT
* *
60119035 GTATTGTCAGAGAGAAGATCGAAGATATCAAATTTGGTGTCTCTGTATTGATAGAAAGCAGAT--
65 GTATTGTCAGAGAGAAGATCGAAGATATCAGATTTGGAGTCTCTGTATTG-TAGAAAGCAGATCG
60119098 AA
129 AA
* * * *
60119100 -A-A--GATTTGGCGTCTCTGTATTTTCAGAGAGTAGATCAAAGATAGCGGATTTGGCGTCTCTG
1 GATAGCGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCAAAAATAGCAGATTTGGCGTCTCTG
* * * * *
60119161 TATTGTTAGAGAGCAGATCGAAGATAGCTGATTTGGAGTCTCTGTATTGTCAGAAAGTAGATCGA
66 TATTGTCAGAGAGAAGATCGAAGATATCAGATTTGGAGTCTCTGTATTGT-AGAAAGCAGATCGA
60119226 A
130 A
* *
60119227 GATAGCTGATTT-GCGTCTCTGTATTGTCAGAGAGCAAATCAAAAATAGCAGATTTGGCGTCTCC
1 GATAGC-GATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCAAAAATAGCAGATTTGGCGTCTCT
* * *
60119291 GTATTGTCAGAGAGTAGATCGAAGATATCAGATTTGGCGTCTCTG-ATTGTTAGAGAGCAGATCG
65 GTATTGTCAGAGAGAAGATCGAAGATATCAGATTTGGAGTCTCTGTATTG-TAGAAAGCAGATCG
60119355 AA
129 AA
* *
60119357 GAT-GACAGATTTGGCGTCTCTGTATTATCAGAGAGCAGATCGAAAATAGCAGATTTGGCG
1 GATAG-C-GATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCAAAAATAGCAGATTTGGCG
60119417 AGCAGATCGA
Statistics
Matches: 275, Mismatches: 31, Indels: 21
0.84 0.09 0.06
Matches are distributed among these distances:
124 1 0.00
125 105 0.38
127 2 0.01
128 2 0.01
129 3 0.01
130 26 0.09
131 131 0.48
132 5 0.02
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.30
Consensus pattern (130 bp):
GATAGCGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCAAAAATAGCAGATTTGGCGTCTCTG
TATTGTCAGAGAGAAGATCGAAGATATCAGATTTGGAGTCTCTGTATTGTAGAAAGCAGATCGAA
Found at i:60119420 original size:27 final size:27
Alignment explanation
Indices: 60119389--60119443 Score: 101
Period size: 27 Copynumber: 2.0 Consensus size: 27
60119379 TATTATCAGA
60119389 GAGCAGATCGAAAATAGCAGATTTGGC
1 GAGCAGATCGAAAATAGCAGATTTGGC
*
60119416 GAGCAGATCGAAAATAGCGGATTTGGC
1 GAGCAGATCGAAAATAGCAGATTTGGC
60119443 G
1 G
60119444 TCTCTGTATT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.35, C:0.15, G:0.33, T:0.18
Consensus pattern (27 bp):
GAGCAGATCGAAAATAGCAGATTTGGC
Found at i:60119439 original size:71 final size:71
Alignment explanation
Indices: 60119345--60119486 Score: 214
Period size: 71 Copynumber: 2.0 Consensus size: 71
60119335 GATTGTTAGA
* * *
60119345 GAGCAGATCGAAGATGACAGATTTGGCGTCTCTGTATTATCAGAGAGCAGATCGAAAATAGCAGA
1 GAGCAGATCGAAAATGACAGATTTGGCGTCTCTGTATTAGCAGAGAGCAGATCGAAAATAACAGA
60119410 TTTGGC
66 TTTGGC
* * *
60119416 GAGCAGATCGAAAAT-AGCGGATTTGGCGTCTCTGTATTAGCAGAGGGCATATCGAAAATAACAG
1 GAGCAGATCGAAAATGA-CAGATTTGGCGTCTCTGTATTAGCAGAGAGCAGATCGAAAATAACAG
60119480 ATTTGGC
65 ATTTGGC
60119487 ATTCCTGAGT
Statistics
Matches: 64, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
70 1 0.02
71 63 0.98
ACGTcount: A:0.32, C:0.15, G:0.28, T:0.24
Consensus pattern (71 bp):
GAGCAGATCGAAAATGACAGATTTGGCGTCTCTGTATTAGCAGAGAGCAGATCGAAAATAACAGA
TTTGGC
Found at i:60121017 original size:25 final size:25
Alignment explanation
Indices: 60120989--60121048 Score: 61
Period size: 25 Copynumber: 2.4 Consensus size: 25
60120979 TTTCTCTCTT
60120989 TATAATTTATTTATTTTAA-ATATAA
1 TATAATTTATTTATTTTAATATA-AA
* *
60121014 TATACA-GTATTTATTTTACTATAAA
1 TATA-ATTTATTTATTTTAATATAAA
*
60121039 TATTATTTAT
1 TATAATTTAT
60121049 ATATGAAAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 6
0.74 0.11 0.16
Matches are distributed among these distances:
24 1 0.04
25 23 0.82
26 4 0.14
ACGTcount: A:0.40, C:0.03, G:0.02, T:0.55
Consensus pattern (25 bp):
TATAATTTATTTATTTTAATATAAA
Found at i:60121799 original size:27 final size:27
Alignment explanation
Indices: 60121762--60121815 Score: 99
Period size: 27 Copynumber: 2.0 Consensus size: 27
60121752 TCTATGATTA
60121762 TATATGCATAAGATGATAACGTATATT
1 TATATGCATAAGATGATAACGTATATT
*
60121789 TATATGCATAAGATGATAATGTATATT
1 TATATGCATAAGATGATAACGTATATT
60121816 GTGTAATTTA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.41, C:0.06, G:0.15, T:0.39
Consensus pattern (27 bp):
TATATGCATAAGATGATAACGTATATT
Found at i:60132268 original size:47 final size:47
Alignment explanation
Indices: 60132202--60132740 Score: 933
Period size: 47 Copynumber: 11.7 Consensus size: 47
60132192 GAAATGATAG
*
60132202 TAAGGCCTAATGGCCGATGTGATGAACGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
60132249 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
60132298 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
60132345 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
60132394 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
60132441 TAAGGCCTAATGGTCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
60132488 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
60132535 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
60132580 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA-GTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
60132626 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
60132673 T-AGGCCTAATGGCCGATGTGATG-ATGTGAAAGTG----TATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
60132714 T-AGG-CT-A-GGCCGATGTGATGAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGA
60132741 TATATGTGAC
Statistics
Matches: 481, Mismatches: 3, Indels: 24
0.95 0.01 0.05
Matches are distributed among these distances:
38 13 0.03
39 7 0.01
40 2 0.00
41 11 0.02
45 56 0.12
46 68 0.14
47 230 0.48
49 94 0.20
ACGTcount: A:0.31, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:60132366 original size:96 final size:94
Alignment explanation
Indices: 60132202--60132740 Score: 933
Period size: 96 Copynumber: 5.8 Consensus size: 94
60132192 GAAATGATAG
*
60132202 TAAGGCCTAATGGCCGATGTGATGAACGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
60132267 GTGATGAATGTGAAAGTGTATATATATGTGA
66 GTGATGAATGTGAAAGTG--TATATATGTGA
60132298 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
60132363 GTGATGAATGTGAAAGTGTATATATATGTGA
66 GTGATGAATGTGAAAGTG--TATATATGTGA
*
60132394 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGTCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
60132459 GTGATGAATGTGAAAGTGTATATATGTGA
66 GTGATGAATGTGAAAGTGTATATATGTGA
60132488 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
60132553 GTGATGAATGTGAAAGTG--TATATGTGA
66 GTGATGAATGTGAAAGTGTATATATGTGA
60132580 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA-GTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
60132644 GTGATGAATGTGAAAGTGTATATATGTGA
66 GTGATGAATGTGAAAGTGTATATATGTGA
60132673 T-AGGCCTAATGGCCGATGTGATG-ATGTGAAAGTG----TATGTGAT-AGG-CT-A-GGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
60132728 GTGATGAATGTGA
66 GTGATGAATGTGA
60132741 TATATGTGAC
Statistics
Matches: 437, Mismatches: 3, Indels: 18
0.95 0.01 0.04
Matches are distributed among these distances:
84 20 0.05
85 1 0.00
86 2 0.00
87 5 0.01
88 5 0.01
91 51 0.12
92 73 0.17
93 10 0.02
94 93 0.21
96 177 0.41
ACGTcount: A:0.31, C:0.09, G:0.30, T:0.29
Consensus pattern (94 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
GTGATGAATGTGAAAGTGTATATATGTGA
Found at i:60132460 original size:143 final size:141
Alignment explanation
Indices: 60132202--60132740 Score: 933
Period size: 143 Copynumber: 3.9 Consensus size: 141
60132192 GAAATGATAG
*
60132202 TAAGGCCTAATGGCCGATGTGATGAACGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
60132267 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
66 GTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
60132332 TGTATATATGTGA
129 TGTATATATGTGA
60132345 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
*
60132410 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGTCGATGTGATGAATGTGAAAG
64 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
60132475 TGTATATATGTGA
129 TGTATATATGTGA
60132488 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
60132553 GTGATGAATGTGAAAGTG--TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
66 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
60132616 TATATA-GTGA
131 TATATATGTGA
60132626 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT-AGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
60132690 GTGATG-ATGTGAAAGTG----TATGTGAT-AGG-CT-A-GGCCGATGTGATGAATGTGA
66 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
60132741 TATATGTGAC
Statistics
Matches: 391, Mismatches: 3, Indels: 17
0.95 0.01 0.04
Matches are distributed among these distances:
130 20 0.05
131 1 0.00
132 2 0.01
133 3 0.01
134 8 0.02
136 11 0.03
137 22 0.06
138 52 0.13
139 50 0.13
141 47 0.12
143 128 0.33
145 47 0.12
ACGTcount: A:0.31, C:0.09, G:0.30, T:0.29
Consensus pattern (141 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
TATATATGTGA
Found at i:60132557 original size:22 final size:22
Alignment explanation
Indices: 60132529--60132602 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
60132519 AAGTGTATAT
60132529 ATGTGATAAGGCCTAATGGCCG
1 ATGTGATAAGGCCTAATGGCCG
* * ***
60132551 ATGTGATGAATG--TGAAAGTGTAT
1 ATGTGAT-AAGGCCT-AATG-GCCG
60132574 ATGTGATAAGGCCTAATGGCCG
1 ATGTGATAAGGCCTAATGGCCG
60132596 ATGTGAT
1 ATGTGAT
60132603 GAATGTGAAA
Statistics
Matches: 37, Mismatches: 10, Indels: 10
0.65 0.18 0.18
Matches are distributed among these distances:
21 1 0.03
22 21 0.57
23 14 0.38
24 1 0.03
ACGTcount: A:0.30, C:0.11, G:0.31, T:0.28
Consensus pattern (22 bp):
ATGTGATAAGGCCTAATGGCCG
Found at i:60132986 original size:36 final size:37
Alignment explanation
Indices: 60132918--60132995 Score: 122
Period size: 36 Copynumber: 2.1 Consensus size: 37
60132908 CCGAGCTCTA
* *
60132918 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGGGATTATGTCCGGGT
*
60132955 AAGACCCGATAACTTCGTGT-GGGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGGGATTATGTCCGGGT
60132991 AAGAC
1 AAGAC
60132996 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
36 20 0.53
37 18 0.47
ACGTcount: A:0.23, C:0.19, G:0.32, T:0.26
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGGGATTATGTCCGGGT
Found at i:60134682 original size:43 final size:43
Alignment explanation
Indices: 60134634--60134736 Score: 206
Period size: 43 Copynumber: 2.4 Consensus size: 43
60134624 TTGGTTTTCA
60134634 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
60134677 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
60134720 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
60134737 TTGAAATGCA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 60 1.00
ACGTcount: A:0.22, C:0.16, G:0.36, T:0.26
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
Found at i:60134783 original size:27 final size:29
Alignment explanation
Indices: 60134718--60134789 Score: 103
Period size: 27 Copynumber: 2.6 Consensus size: 29
60134708 GTTGTGAGAT
* *
60134718 TGGCACTAAGTGTGCGGGCTTGAAATGCA
1 TGGCACTAAGTGTGCGAGCTTGAAATACA
*
60134747 TGGCACTAAGTGTGCGAG-TTTAAA-ACA
1 TGGCACTAAGTGTGCGAGCTTGAAATACA
60134774 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
60134790 TGGTTGATTA
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
27 18 0.45
28 5 0.12
29 17 0.43
ACGTcount: A:0.26, C:0.17, G:0.32, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGAAATACA
Found at i:60135199 original size:39 final size:40
Alignment explanation
Indices: 60135098--60135241 Score: 154
Period size: 40 Copynumber: 3.6 Consensus size: 40
60135088 TCGAATGATG
* *
60135098 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
60135137 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
* * *
60135178 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
60135217 TCCGGGCTAAGTCCCGAAGAGCATT
1 TCCGGGCTAAGTCCCGAAG-GCATT
60135242 CATGCTAGTG
Statistics
Matches: 90, Mismatches: 7, Indels: 13
0.82 0.06 0.12
Matches are distributed among these distances:
39 35 0.39
40 37 0.41
41 17 0.19
42 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.28, T:0.23
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:60135260 original size:40 final size:40
Alignment explanation
Indices: 60135216--60135372 Score: 233
Period size: 40 Copynumber: 3.9 Consensus size: 40
60135206 GAGTTACTAA
60135216 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
60135256 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* * * * *
60135296 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTGGTGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* * * *
60135336 GTCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGTGA
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
60135373 CGTGTATTCG
Statistics
Matches: 106, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 106 1.00
ACGTcount: A:0.23, C:0.22, G:0.30, T:0.25
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
Found at i:60138703 original size:25 final size:25
Alignment explanation
Indices: 60138675--60138753 Score: 65
Period size: 25 Copynumber: 3.3 Consensus size: 25
60138665 CTAATGGCCG
60138675 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
* *** ****
60138700 ATGTGAT-AAGGCCTAA-TG-GCCG
1 ATGTGATGAATGTGAAAGTGTATAT
60138722 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
60138747 ATGTGAT
1 ATGTGAT
60138754 AAGGCCTAAT
Statistics
Matches: 35, Mismatches: 16, Indels: 6
0.61 0.28 0.11
Matches are distributed among these distances:
22 7 0.20
23 7 0.20
24 7 0.20
25 14 0.40
ACGTcount: A:0.33, C:0.05, G:0.29, T:0.33
Consensus pattern (25 bp):
ATGTGATGAATGTGAAAGTGTATAT
Found at i:60138725 original size:47 final size:47
Alignment explanation
Indices: 60138659--60139272 Score: 1076
Period size: 47 Copynumber: 13.1 Consensus size: 47
60138649 GAAATGATAG
60138659 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
60138706 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
60138753 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA-GTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
60138799 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
60138846 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
60138895 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
60138942 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
60138989 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
60139036 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA-GTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
60139082 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
60139129 T-AGGCCTAATGG-CGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
*
60139176 T-AGGCCTAATGGCCGATGTGATGAATGTGAAAGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * * * * * * *
60139222 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
60139269 TAAG
1 TAAG
60139273 TCCGAAGGGC
Statistics
Matches: 547, Mismatches: 12, Indels: 16
0.95 0.02 0.03
Matches are distributed among these distances:
45 22 0.04
46 114 0.21
47 343 0.63
48 21 0.04
49 47 0.09
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:60138836 original size:93 final size:94
Alignment explanation
Indices: 60138659--60139272 Score: 1076
Period size: 93 Copynumber: 6.5 Consensus size: 94
60138649 GAAATGATAG
60138659 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
60138724 GTGATGAATGTGAAAGTGTATATATGTGA
66 GTGATGAATGTGAAAGTGTATATATGTGA
60138753 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA-GTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
60138817 GTGATGAATGTGAAAGTGTATATATGTGA
66 GTGATGAATGTGAAAGTGTATATATGTGA
60138846 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
60138911 ATGTGATGAATGTGAAAGTGTATATATGTGA
64 ATGTGATGAATGTGAAAGTGTATATATGTGA
60138942 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
60139007 GTGATGAATGTGAAAGTGTATATATGTGA
66 GTGATGAATGTGAAAGTGTATATATGTGA
60139036 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA-GTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
60139100 GTGATGAATGTGAAAGTGTATATATGTGA
66 GTGATGAATGTGAAAGTGTATATATGTGA
60139129 T-AGGCCTAATGG-CGATGTGATGAATGTGAAAGTGTATATATATGTGAT-AGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
*
60139191 ATGTGATGAATGTGAAAGTATATATATGTGA
64 ATGTGATGAATGTGAAAGTGTATATATGTGA
* * * * * * * *
60139222 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
60139273 TCCGAAGGGC
Statistics
Matches: 502, Mismatches: 9, Indels: 18
0.95 0.02 0.03
Matches are distributed among these distances:
91 22 0.04
92 11 0.02
93 200 0.40
94 157 0.31
95 25 0.05
96 87 0.17
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (94 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
GTGATGAATGTGAAAGTGTATATATGTGA
Found at i:60139171 original size:283 final size:282
Alignment explanation
Indices: 60138659--60139272 Score: 1124
Period size: 283 Copynumber: 2.2 Consensus size: 282
60138649 GAAATGATAG
60138659 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
60138724 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
66 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
60138789 TATATAGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
131 TATATAGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
60138854 AATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
196 AATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGAT-AGGCCTAATGGCCGATGTGATG
*
60138919 AATGTGAAAGTGTATATATGTGA
260 AATGTGAAAGTATATATATGTGA
60138942 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
60139007 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
66 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
60139072 TATATAGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT-AGGCCT
131 TATATAGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
60139136 AATGG-CGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGCCTAATGGCCGATGTGATGA
196 AATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGCCTAATGGCCGATGTGATGA
60139200 ATGTGAAAGTATATATATGTGA
261 ATGTGAAAGTATATATATGTGA
* * * * * * * *
60139222 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
60139273 TCCGAAGGGC
Statistics
Matches: 322, Mismatches: 9, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
280 87 0.27
281 36 0.11
282 11 0.03
283 188 0.58
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (282 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
TATATAGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
AATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGCCTAATGGCCGATGTGATGA
ATGTGAAAGTATATATATGTGA
Found at i:60139446 original size:37 final size:37
Alignment explanation
Indices: 60139390--60139468 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
60139380 CCGAGCTCTA
* * *
60139390 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
60139427 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
60139464 AAGAC
1 AAGAC
60139469 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:60144105 original size:44 final size:44
Alignment explanation
Indices: 60144049--60144628 Score: 619
Period size: 44 Copynumber: 13.3 Consensus size: 44
60144039 GTAGATCACC
* * * *
60144049 GATAGCCGATTTGGCGTCTTTGTATTGTTAGAGACCAGATCAAA
1 GATAGCAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCAAA
* *
60144093 GATAACAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCACA
1 GATAGCAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCAAA
* * ** *
60144137 GACATCAGATTTGGTTTCTCTGTATTGAT-AGAAAGCAGATC---
1 GATAGCAGATTTGGCGTCTCTGTATTG-TCAGAGAGCAGATCAAA
* * *
60144178 -A-A--AGATTTGGTGTCTCTGTATTATCAGAGAGCAGATCGAA
1 GATAGCAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCAAA
* * *
60144218 GATAGCTGATTTGGCGTCTCTGTATTGTCAGAGAACAGATCGAA
1 GATAGCAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCAAA
* * *
60144262 GATAGCGGATTTGGCGTCTCTGTATTGTCAGAGAGTAGATCGAA
1 GATAGCAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCAAA
*
60144306 GATAGCTGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAA
1 GATAGCAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATC-AAA
* * *
60144351 -ATAGTAGATTTGGCATCTCTGTATTGTCAGAGAGCAGATCGAA
1 GATAGCAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCAAA
* * * * *
60144394 GATATCAGATTTGGCGTCTTTGTATTGTCAGAGAGTAGATCGAC
1 GATAGCAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCAAA
* * * *
60144438 GATATCAGATTTGGCTTCTCTGTATT-TATAGAGAGCAGATCGAA
1 GATAGCAGATTTGGCGTCTCTGTATTGT-CAGAGAGCAGATCAAA
* *
60144482 GAT-GATAGATTTGGCGTCTCTGTATTGTCAGAGAGTAGATCGAAA
1 GATAG-CAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATC-AAA
* *
60144527 -ATAGTAGATTTGGCGTCTCTGTATTGTCAGAGAGTAGATCGAAA
1 GATAGCAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATC-AAA
* ** *
60144571 -ATGGTGGATTTGGCGTCTCTGTATTGTCAGAGAGCAGACTGAAA
1 GATAGCAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGA-TCAAA
* *
60144615 AATAACAGATTTGG
1 GATAGCAGATTTGG
60144629 TGATCCTGAT
Statistics
Matches: 465, Mismatches: 53, Indels: 35
0.84 0.10 0.06
Matches are distributed among these distances:
36 1 0.00
37 30 0.06
39 1 0.00
40 1 0.00
41 1 0.00
42 1 0.00
43 3 0.01
44 410 0.88
45 17 0.04
ACGTcount: A:0.28, C:0.14, G:0.27, T:0.31
Consensus pattern (44 bp):
GATAGCAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCAAA
Found at i:60144194 original size:37 final size:37
Alignment explanation
Indices: 60144143--60144220 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
60144133 CACAGACATC
*
60144143 AGATTTGGTTTCTCTGTATTGAT-AGAAAGCAGATCAA
1 AGATTTGGTGTCTCTGTATT-ATCAGAAAGCAGATCAA
* *
60144180 AGATTTGGTGTCTCTGTATTATCAGAGAGCAGATCGA
1 AGATTTGGTGTCTCTGTATTATCAGAAAGCAGATCAA
60144217 AGAT
1 AGAT
60144221 AGCTGATTTG
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
36 2 0.05
37 35 0.95
ACGTcount: A:0.31, C:0.12, G:0.24, T:0.33
Consensus pattern (37 bp):
AGATTTGGTGTCTCTGTATTATCAGAAAGCAGATCAA
Found at i:60144376 original size:132 final size:133
Alignment explanation
Indices: 60144049--60144608 Score: 684
Period size: 132 Copynumber: 4.3 Consensus size: 133
60144039 GTAGATCACC
* * * * *
60144049 GATAGCCGATTTGGCGTCTTTGTATTGTTAGAGACCAGATC-AAAGATA-ACAGATTTGGCGTCT
1 GATAGCTGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAA-ATAGATAGATTTGGCGTCT
* * ** * *
60144112 CTGTATTGTCAGAGAGCAGATC-ACAGACATCAGATTTGGTTTCTCTGTATTGAT-AGAAAGCAG
65 CTGTATTGTCAGAGAGCAGATCGA-AGATAGCAGATTTGGCGTCTCTGTATTG-TCAGAGAGTAG
60144175 ATC--A
128 ATCGAA
* * * *
60144179 -A-A---GATTTGGTGTCTCTGTATTATCAGAGAGCAGATCGAAGATAGCT-GATTTGGCGTCTC
1 GATAGCTGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAAATAGATAGATTTGGCGTCTC
* *
60144238 TGTATTGTCAGAGAACAGATCGAAGATAGCGGATTTGGCGTCTCTGTATTGTCAGAGAGTAGATC
66 TGTATTGTCAGAGAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGTCAGAGAGTAGATC
60144303 GAA
131 GAA
*
60144306 GATAGCTGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAAATAG-TAGATTTGGCATCTC
1 GATAGCTGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAAATAGATAGATTTGGCGTCTC
* *
60144370 TGTATTGTCAGAGAGCAGATCGAAGATATCAGATTTGGCGTCTTTGTATTGTCAGAGAGTAGATC
66 TGTATTGTCAGAGAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGTCAGAGAGTAGATC
*
60144435 GAC
131 GAA
* * * * *
60144438 GATATCAGATTTGGCTTCTCTGTATT-TATAGAGAGCAGATCGAAGAT-GATAGATTTGGCGTCT
1 GATAGCTGATTTGGCGTCTCTGTATTGT-CAGAGAGCAGATCGAAAATAGATAGATTTGGCGTCT
* * *
60144501 CTGTATTGTCAGAGAGTAGATCGAAAATAGTAGATTTGGCGTCTCTGTATTGTCAGAGAGTAGAT
65 CTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGTCAGAGAGTAGAT
60144566 CGAA
130 CGAA
* *
60144570 AAT-GGTGGATTTGGCGTCTCTGTATTGTCAGAGAGCAGA
1 GATAGCT-GATTTGGCGTCTCTGTATTGTCAGAGAGCAGA
60144609 CTGAAAAATA
Statistics
Matches: 371, Mismatches: 43, Indels: 30
0.84 0.10 0.07
Matches are distributed among these distances:
124 1 0.00
125 98 0.26
126 3 0.01
127 1 0.00
128 2 0.01
129 2 0.01
131 3 0.01
132 260 0.70
133 1 0.00
ACGTcount: A:0.28, C:0.14, G:0.27, T:0.31
Consensus pattern (133 bp):
GATAGCTGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAAATAGATAGATTTGGCGTCTC
TGTATTGTCAGAGAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGTCAGAGAGTAGATC
GAA
Found at i:60146341 original size:8 final size:8
Alignment explanation
Indices: 60146328--60146361 Score: 52
Period size: 8 Copynumber: 4.4 Consensus size: 8
60146318 TTGTTCATTA
60146328 TATTATAT
1 TATTATAT
60146336 TATTATAT
1 TATTATAT
*
60146344 TATAATAT
1 TATTATAT
60146352 TATT-TAT
1 TATTATAT
60146359 TAT
1 TAT
60146362 AATTTTAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
7 6 0.25
8 18 0.75
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (8 bp):
TATTATAT
Found at i:60146342 original size:13 final size:13
Alignment explanation
Indices: 60146324--60146364 Score: 55
Period size: 13 Copynumber: 3.0 Consensus size: 13
60146314 TATATTGTTC
*
60146324 ATTATATTATATT
1 ATTATATTATAAT
60146337 ATTATATTATAAT
1 ATTATATTATAAT
60146350 ATTATTTATTATAAT
1 ATTA--TATTATAAT
60146365 TTTAAAAATT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
13 16 0.64
15 9 0.36
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (13 bp):
ATTATATTATAAT
Found at i:60146352 original size:33 final size:33
Alignment explanation
Indices: 60146289--60146362 Score: 80
Period size: 33 Copynumber: 2.2 Consensus size: 33
60146279 TTTATACATC
* *
60146289 TCATTATATATCATTTTATTATACATATATTGT
1 TCATTATATATCATATTATTATACATATATTAT
*
60146322 TCATTATAT-T-ATATTATTATATTATAATATTAT
1 TCATTATATATCATATTATTATA-CAT-ATATTAT
*
60146355 TTATTATA
1 TCATTATA
60146363 ATTTTAAAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
31 10 0.29
32 3 0.09
33 22 0.63
ACGTcount: A:0.36, C:0.05, G:0.01, T:0.57
Consensus pattern (33 bp):
TCATTATATATCATATTATTATACATATATTAT
Found at i:60146934 original size:27 final size:27
Alignment explanation
Indices: 60146897--60146950 Score: 99
Period size: 27 Copynumber: 2.0 Consensus size: 27
60146887 TCTATGATTA
60146897 TATATGCATAAGATGATAACATATATT
1 TATATGCATAAGATGATAACATATATT
*
60146924 TATATGCATAAGATGATAACGTATATT
1 TATATGCATAAGATGATAACATATATT
60146951 GTGTAATTTA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.43, C:0.07, G:0.13, T:0.37
Consensus pattern (27 bp):
TATATGCATAAGATGATAACATATATT
Found at i:60148628 original size:20 final size:20
Alignment explanation
Indices: 60148581--60148630 Score: 73
Period size: 20 Copynumber: 2.5 Consensus size: 20
60148571 CGGCCTGCCT
* *
60148581 ACACGGACATGTCCCAAGCC
1 ACACGGGCATATCCCAAGCC
60148601 ACACGGGCATATCCCAAGCC
1 ACACGGGCATATCCCAAGCC
*
60148621 ACATGGGCAT
1 ACACGGGCAT
60148631 GTGGCCCTTA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.30, C:0.36, G:0.22, T:0.12
Consensus pattern (20 bp):
ACACGGGCATATCCCAAGCC
Found at i:60153061 original size:27 final size:27
Alignment explanation
Indices: 60153030--60153207 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
60153020 TAAATTGTAC
60153030 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
60153057 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
60153083 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
60153111 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
60153139 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
60153166 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
60153193 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
60153208 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:60153144 original size:82 final size:81
Alignment explanation
Indices: 60153031--60153186 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
60153021 AAATTGTACA
* *
60153031 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
60153095 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
60153112 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
60153177 TGCGAGTTGA
65 TGCGAATTGA
60153187 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:60153198 original size:82 final size:81
Alignment explanation
Indices: 60153027--60153207 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
60153017 GATTAAATTG
* *
60153027 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
60153092 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
60153108 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
60153172 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
60153190 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
60153208 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:60160726 original size:27 final size:27
Alignment explanation
Indices: 60160695--60160871 Score: 203
Period size: 27 Copynumber: 6.5 Consensus size: 27
60160685 TAAATTGTAC
60160695 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
60160722 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
60160748 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
60160776 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
60160804 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
60160831 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
60160858 AGCACTGAGTGTGC
1 AGCACTAAGTGTGC
60160872 AGACTCAATA
Statistics
Matches: 128, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 105 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:60160809 original size:82 final size:81
Alignment explanation
Indices: 60160696--60160851 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
60160686 AAATTGTACA
* *
60160696 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
60160760 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
60160777 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
60160842 TGCGAGTTGA
65 TGCGAATTGA
60160852 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:60160863 original size:82 final size:81
Alignment explanation
Indices: 60160692--60160871 Score: 227
Period size: 82 Copynumber: 2.2 Consensus size: 81
60160682 GATTAAATTG
* *
60160692 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
60160757 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
60160773 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
60160837 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
60160855 TATAGCACTGAGTGTGC
1 TACAGCACTAAGTGTGC
60160872 AGACTCAATA
Statistics
Matches: 83, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.22
82 65 0.78
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:60168554 original size:42 final size:42
Alignment explanation
Indices: 60168508--60168617 Score: 123
Period size: 42 Copynumber: 2.6 Consensus size: 42
60168498 AGATTACGCA
* * * *
60168508 TAAGACCATATCTGGGATATGGCATCGATATGAGGATTC-GTG
1 TAAGACCATATCTGGGATATGGCATCGATA-AAAGATCCTATG
* *
60168550 TAAGACCATAGCTGGGCTATTGGCATCGATAAAAGATCCTATG
1 TAAGACCATATCTGGGATA-TGGCATCGATAAAAGATCCTATG
* *
60168593 TAAGACCGTATCTAGGATATGGCAT
1 TAAGACCATATCTGGGATATGGCAT
60168618 TGGTATGATT
Statistics
Matches: 56, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
42 28 0.50
43 28 0.50
ACGTcount: A:0.31, C:0.16, G:0.25, T:0.27
Consensus pattern (42 bp):
TAAGACCATATCTGGGATATGGCATCGATAAAAGATCCTATG
Found at i:60169738 original size:20 final size:20
Alignment explanation
Indices: 60169713--60169766 Score: 81
Period size: 20 Copynumber: 2.7 Consensus size: 20
60169703 GACGGCCTAC
60169713 CCACACGGGTGTGTCCCAAG
1 CCACACGGGTGTGTCCCAAG
* * *
60169733 CCACACAGGAGTGTCCTAAG
1 CCACACGGGTGTGTCCCAAG
60169753 CCACACGGGTGTGT
1 CCACACGGGTGTGT
60169767 GGCCCTTAAA
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.22, C:0.31, G:0.30, T:0.17
Consensus pattern (20 bp):
CCACACGGGTGTGTCCCAAG
Found at i:60173385 original size:13 final size:13
Alignment explanation
Indices: 60173367--60173394 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
60173357 TAGTAACATT
60173367 AGATCAACAGGAA
1 AGATCAACAGGAA
60173380 AGATCAACAGGAA
1 AGATCAACAGGAA
60173393 AG
1 AG
60173395 TCACAGTCAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.54, C:0.14, G:0.25, T:0.07
Consensus pattern (13 bp):
AGATCAACAGGAA
Found at i:60181458 original size:24 final size:24
Alignment explanation
Indices: 60181426--60181473 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
60181416 ACATGGGTTG
60181426 GATTGGATAAATCAATATCACACT
1 GATTGGATAAATCAATATCACACT
60181450 GATTGGATAAATCAATATCACACT
1 GATTGGATAAATCAATATCACACT
60181474 ATCTTAAGTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.42, C:0.17, G:0.12, T:0.29
Consensus pattern (24 bp):
GATTGGATAAATCAATATCACACT
Found at i:60183193 original size:112 final size:111
Alignment explanation
Indices: 60183032--60183264 Score: 313
Period size: 112 Copynumber: 2.1 Consensus size: 111
60183022 CCATATAATC
* * * *
60183032 AGTAGATATCACTCGTTTGAGCCTATTAGTATAATCAGTGGATATCACTCGTTTAAGCAATTTTC
1 AGTAGATATTACTCATTTGAGCCCATTAGTATAATCAGTGGATATCACTCGTTTAAGCAACTTTC
* * *
60183097 AATATAATCAGTAAACATTTCTCTTTTAAGAACGTTCAGTACATTA
66 AATATAATCAATAAACATTGCTCTTTTAAGAACGTTCAGTACATCA
* * *
60183143 AGTAGATATTTCTCATTTGAGCCCATTCAGTATAATTAGTGGATATCACTCGTTTGAGCAACTTT
1 AGTAGATATTACTCATTTGAGCCCATT-AGTATAATCAGTGGATATCACTCGTTTAAGCAACTTT
* * * * * *
60183208 CAGTATAATCAATAAACATTGCTCTTTTGAGCATGTTCAGTAGATCC
65 CAATATAATCAATAAACATTGCTCTTTTAAGAACGTTCAGTACATCA
60183255 AGTAGATATT
1 AGTAGATATT
60183265 GCTTGTTTGT
Statistics
Matches: 105, Mismatches: 16, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
111 23 0.22
112 82 0.78
ACGTcount: A:0.32, C:0.16, G:0.15, T:0.37
Consensus pattern (111 bp):
AGTAGATATTACTCATTTGAGCCCATTAGTATAATCAGTGGATATCACTCGTTTAAGCAACTTTC
AATATAATCAATAAACATTGCTCTTTTAAGAACGTTCAGTACATCA
Found at i:60184633 original size:13 final size:13
Alignment explanation
Indices: 60184615--60184639 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
60184605 AATAAGACTC
60184615 TAAAAATATTTAA
1 TAAAAATATTTAA
60184628 TAAAAATATTTA
1 TAAAAATATTTA
60184640 CATCTTTAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (13 bp):
TAAAAATATTTAA
Found at i:60184827 original size:29 final size:29
Alignment explanation
Indices: 60184792--60184850 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
60184782 CGTATAATTT
60184792 AAATATAATTATTTGAACTTACTCATCAG
1 AAATATAATTATTTGAACTTACTCATCAG
60184821 AAATATAATTATTTGAACTTACTCATCAG
1 AAATATAATTATTTGAACTTACTCATCAG
60184850 A
1 A
60184851 CTTATGATCC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.42, C:0.14, G:0.07, T:0.37
Consensus pattern (29 bp):
AAATATAATTATTTGAACTTACTCATCAG
Found at i:60186042 original size:63 final size:64
Alignment explanation
Indices: 60185964--60186109 Score: 181
Period size: 63 Copynumber: 2.3 Consensus size: 64
60185954 TAACATTCCT
* * *
60185964 CATTGTGGCCAAGCCACTCAATAAT-ACAGACAAGCTACACATTGTGGTCAAACCACTCAAT-AA
1 CATTGTGGCCAAGCCACTCAAT-ATCACAGACAAACTACACATTATGGACAAACCACTCAATGAA
* * * *
60186027 CATTGTGCCCAAGCCACTCAATATCGCAGACAAACTGCACATTATGGACAAGCCACTCAATGAA
1 CATTGTGGCCAAGCCACTCAATATCACAGACAAACTACACATTATGGACAAACCACTCAATGAA
* *
60186091 -GTTATGGCCAAGCCACTCA
1 CATTGTGGCCAAGCCACTCA
60186110 CTATTGTAGT
Statistics
Matches: 71, Mismatches: 10, Indels: 4
0.84 0.12 0.05
Matches are distributed among these distances:
62 2 0.03
63 67 0.94
64 2 0.03
ACGTcount: A:0.36, C:0.29, G:0.16, T:0.20
Consensus pattern (64 bp):
CATTGTGGCCAAGCCACTCAATATCACAGACAAACTACACATTATGGACAAACCACTCAATGAA
Found at i:60186043 original size:24 final size:24
Alignment explanation
Indices: 60186002--60186049 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
60185992 GACAAGCTAC
**
60186002 ACATTGTGGTCAAACCACTCAATA
1 ACATTGTGCCCAAACCACTCAATA
*
60186026 ACATTGTGCCCAAGCCACTCAATA
1 ACATTGTGCCCAAACCACTCAATA
60186050 TCGCAGACAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.35, C:0.29, G:0.12, T:0.23
Consensus pattern (24 bp):
ACATTGTGCCCAAACCACTCAATA
Found at i:60187319 original size:13 final size:13
Alignment explanation
Indices: 60187301--60187326 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
60187291 TAGTTTACCA
60187301 AAATTATTATAAT
1 AAATTATTATAAT
60187314 AAATTATTATAAT
1 AAATTATTATAAT
60187327 TAAGATTTCG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (13 bp):
AAATTATTATAAT
Found at i:60189324 original size:40 final size:40
Alignment explanation
Indices: 60189246--60189469 Score: 294
Period size: 40 Copynumber: 5.5 Consensus size: 40
60189236 ACCCAAGTAT
* * *
60189246 CTTCGGGATTTAG-CCGGATATAG-CAACTCGCATAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* **
60189285 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCATGAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
60189325 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
60189365 CTTCGGGACTTAGCCCGGGA-ATAG-CAACTACTCGCACAAATGC
1 CTTCGGGACTTAGCCC-GGATATAGTC-ACTA---GCACAAATGC
* *
60189408 CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
60189448 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
60189470 CATCCGAATA
Statistics
Matches: 167, Mismatches: 9, Indels: 17
0.87 0.05 0.09
Matches are distributed among these distances:
39 12 0.07
40 115 0.69
41 4 0.02
42 3 0.02
43 33 0.20
ACGTcount: A:0.26, C:0.26, G:0.24, T:0.24
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:60189428 original size:83 final size:81
Alignment explanation
Indices: 60189246--60189469 Score: 289
Period size: 83 Copynumber: 2.8 Consensus size: 81
60189236 ACCCAAGTAT
* * * *
60189246 CTTCGGGATTTAG-CCGGATATAG-CAACTCGCATAAATGCCTTCGGGTCTTAGCCC-GGATATA
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGCCTTCGGGACTTAGCCCGGGATATA
**
60189308 GTCACTAGCATGAATGC
65 GTCACTAGCACAAATGC
60189325 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGGA-ATAG
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGGATATAG
60189389 -CAACTACTCGCACAAATGC
66 TC-ACTA---GCACAAATGC
* *
60189408 CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCC-GGATAT
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGGATAT
60189470 CATCCGAATA
Statistics
Matches: 129, Mismatches: 8, Indels: 12
0.87 0.05 0.08
Matches are distributed among these distances:
79 13 0.10
80 45 0.35
81 4 0.03
82 3 0.02
83 64 0.50
ACGTcount: A:0.26, C:0.26, G:0.24, T:0.24
Consensus pattern (81 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGGATATAG
TCACTAGCACAAATGC
Found at i:60213184 original size:79 final size:81
Alignment explanation
Indices: 60213047--60213230 Score: 216
Period size: 79 Copynumber: 2.3 Consensus size: 81
60213037 TCGAATGATA
* * * * *
60213047 TCCGGGCTAAGTCTCGAAGGCTTTTGTGCTAAGTGACTATATCCGGATTCAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGATTAAGATCCGAAGGCATT
60213112 TGTGCGAGTTACTAAT
66 TGTGCGAGTTACTAAT
* * *
60213128 TCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGATTAAGAT-CCGAAGGCAT
60213190 TTGTGCGAGTTACT-AT
65 TTGTGCGAGTTACTAAT
* *
60213206 AACCGGGC-AATGTCCCAAAGGCATT
1 -TCCGGGCTAA-GTCCCGAAGGCATT
60213231 TGAGCGAGTA
Statistics
Matches: 89, Mismatches: 10, Indels: 9
0.82 0.09 0.08
Matches are distributed among these distances:
78 5 0.06
79 48 0.54
80 25 0.28
81 11 0.12
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGATTAAGATCCGAAGGCATT
TGTGCGAGTTACTAAT
Found at i:60213196 original size:40 final size:40
Alignment explanation
Indices: 60213046--60213255 Score: 198
Period size: 40 Copynumber: 5.3 Consensus size: 40
60213036 TTCGAATGAT
* * * * * *
60213046 ATCCGGGCTAAGTCTCGAAGGCTTTTGTGCTAAGTGACTAT
1 ATCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAA
* *
60213087 ATCCGGATTCAGAT-CCGAAGGCATTTGTGCGAGTTACTAA
1 ATCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA
* * *
60213127 TTCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
60213166 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-A
* * * *
60213207 A-CCGGG-CAATGTCCCAAAGGCATTTGAGCGAG-TAGCTAT
1 ATCCGGGTTAA-GTCCCGAAGGCATTTGTGCGAGTTA-CTAA
60213246 ATCC-GGTTAA
1 ATCCGGGTTAA
60213256 ATTCTGAAGG
Statistics
Matches: 140, Mismatches: 21, Indels: 17
0.79 0.12 0.10
Matches are distributed among these distances:
39 42 0.30
40 72 0.51
41 25 0.18
42 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
Found at i:60213254 original size:79 final size:78
Alignment explanation
Indices: 60213082--60213255 Score: 203
Period size: 79 Copynumber: 2.2 Consensus size: 78
60213072 GTGCTAAGTG
* * *
60213082 ACTATATCCGGATTCAGATCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGG
1 ACTATATCCGG-TTAAGATCCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCAAAGG
*
60213147 CATTGGTGCGAGTT
65 CATTGGAGCGAGTT
*
60213161 ACTAAATCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGC-AATGTCCCA
1 ACTATATCC-GGTTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAA-G-CCCA
*
60213223 AAGGCATTTGAGCGAG-T
61 AAGGCATTGGAGCGAGTT
60213240 AGCTATATCCGGTTAA
1 A-CTATATCCGGTTAA
60213256 ATTCTGAAGG
Statistics
Matches: 82, Mismatches: 7, Indels: 12
0.81 0.07 0.12
Matches are distributed among these distances:
78 5 0.06
79 51 0.62
80 26 0.32
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (78 bp):
ACTATATCCGGTTAAGATCCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCAAAGGC
ATTGGAGCGAGTT
Found at i:60215366 original size:20 final size:20
Alignment explanation
Indices: 60215341--60215380 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
60215331 ATTTTAAGAA
*
60215341 TTATTTTAGTATCTTTTTAT
1 TTATTTTAATATCTTTTTAT
*
60215361 TTATTTTAATATTTTTTTAT
1 TTATTTTAATATCTTTTTAT
60215381 GTTTTTAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.23, C:0.03, G:0.03, T:0.72
Consensus pattern (20 bp):
TTATTTTAATATCTTTTTAT
Found at i:60215391 original size:20 final size:20
Alignment explanation
Indices: 60215354--60215427 Score: 62
Period size: 20 Copynumber: 3.5 Consensus size: 20
60215344 TTTTAGTATC
*
60215354 TTTTTATTTATTTTAATATT
1 TTTTTATTTATTTAAATATT
60215374 TTTTTATGTT-TTTAAATATAT
1 TTTTTAT-TTATTTAAATAT-T
*
60215395 TTGATTTATTATATTTTTAA-ATT
1 TT--TTTATT-TA-TTTAAATATT
60215418 TTTTTATTTA
1 TTTTTATTTA
60215428 ATGAAATAAG
Statistics
Matches: 45, Mismatches: 2, Indels: 14
0.74 0.03 0.23
Matches are distributed among these distances:
20 17 0.38
21 11 0.24
22 1 0.02
23 9 0.20
24 2 0.04
25 5 0.11
ACGTcount: A:0.27, C:0.00, G:0.03, T:0.70
Consensus pattern (20 bp):
TTTTTATTTATTTAAATATT
Found at i:60217359 original size:2 final size:2
Alignment explanation
Indices: 60217352--60217376 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
60217342 AAATCTCTTT
60217352 TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC T
60217377 ATTTTTTTTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:60219714 original size:30 final size:30
Alignment explanation
Indices: 60219657--60219715 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
60219647 TACGTGTACG
** *
60219657 GAAAGCTCGTGTAGCTGGACACGCTTTCCA
1 GAAAGCTCGCCTAGCTGGACACACTTTCCA
60219687 GAAAGCTCGCCTAGCTGGACGA-ACTTTCC
1 GAAAGCTCGCCTAGCTGGAC-ACACTTTCC
60219716 CTCAAAATCG
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 24 0.96
31 1 0.04
ACGTcount: A:0.24, C:0.29, G:0.25, T:0.22
Consensus pattern (30 bp):
GAAAGCTCGCCTAGCTGGACACACTTTCCA
Found at i:60223244 original size:15 final size:15
Alignment explanation
Indices: 60223224--60223256 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
60223214 TTTTAAATGG
60223224 TTTTATTAATTTTAA
1 TTTTATTAATTTTAA
60223239 TTTTATTAATTTTAA
1 TTTTATTAATTTTAA
60223254 TTT
1 TTT
60223257 AATATTTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (15 bp):
TTTTATTAATTTTAA
Found at i:60223265 original size:14 final size:15
Alignment explanation
Indices: 60223224--60223264 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 15
60223214 TTTTAAATGG
*
60223224 TTTTATTAATTTTAA
1 TTTTAATAATTTTAA
*
60223239 TTTTATTAATTTTAA
1 TTTTAATAATTTTAA
60223254 -TTTAAT-ATTTT
1 TTTTAATAATTTT
60223265 TTATAACTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
13 5 0.20
14 5 0.20
15 15 0.60
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (15 bp):
TTTTAATAATTTTAA
Found at i:60223558 original size:20 final size:20
Alignment explanation
Indices: 60223515--60223554 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
60223505 AGCATAAATT
*
60223515 ATCACATCAACGTTGTTAAC
1 ATCACATCAACATTGTTAAC
60223535 ATCACATCAACATTG-TAAC
1 ATCACATCAACATTGTTAAC
60223554 A
1 A
60223555 ATCAAAGACA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 5 0.26
20 14 0.74
ACGTcount: A:0.40, C:0.25, G:0.07, T:0.28
Consensus pattern (20 bp):
ATCACATCAACATTGTTAAC
Found at i:60226503 original size:6 final size:6
Alignment explanation
Indices: 60226492--60226519 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
60226482 AATAAGTCCA
60226492 AAAAAT AAAAAT AAAAAT AAAAAT AAAA
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAA
60226520 CAAAGTCCAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.86, C:0.00, G:0.00, T:0.14
Consensus pattern (6 bp):
AAAAAT
Found at i:60226666 original size:19 final size:19
Alignment explanation
Indices: 60226642--60226720 Score: 117
Period size: 19 Copynumber: 4.2 Consensus size: 19
60226632 AATCTTTAAG
60226642 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
60226661 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
60226680 GATA--CAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
60226697 GATATGCAATATTGAAGATAT
1 GATATGCAATCTT--AGATAT
60226718 GAT
1 GAT
60226721 CTTGTAATCT
Statistics
Matches: 55, Mismatches: 1, Indels: 6
0.89 0.02 0.10
Matches are distributed among these distances:
17 17 0.31
19 29 0.53
21 9 0.16
ACGTcount: A:0.39, C:0.09, G:0.16, T:0.35
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:60229763 original size:16 final size:14
Alignment explanation
Indices: 60229731--60229783 Score: 65
Period size: 14 Copynumber: 3.7 Consensus size: 14
60229721 ATCGATACCT
60229731 TTTGCATTCATGCA
1 TTTGCATTCATGCA
60229745 TTTGCATCTCATAGCA
1 TTTGCAT-TCAT-GCA
60229761 TTT-CATTACAT-CA
1 TTTGCATT-CATGCA
60229774 TTTGCATTCA
1 TTTGCATTCA
60229784 AAATTATAAA
Statistics
Matches: 35, Mismatches: 0, Indels: 9
0.80 0.00 0.20
Matches are distributed among these distances:
13 7 0.20
14 12 0.34
15 10 0.29
16 6 0.17
ACGTcount: A:0.25, C:0.23, G:0.09, T:0.43
Consensus pattern (14 bp):
TTTGCATTCATGCA
Found at i:60231396 original size:21 final size:21
Alignment explanation
Indices: 60231358--60231397 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
60231348 ATAAAACAAT
*
60231358 TTTTTTAAAAATATATATAAA
1 TTTTATAAAAATATATATAAA
60231379 TTTTATAACAAATA-ATATA
1 TTTTATAA-AAATATATATA
60231398 GACACAAGTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 12 0.71
22 5 0.29
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.45
Consensus pattern (21 bp):
TTTTATAAAAATATATATAAA
Found at i:60235306 original size:1 final size:1
Alignment explanation
Indices: 60235300--60235427 Score: 76
Period size: 1 Copynumber: 128.0 Consensus size: 1
60235290 CTTCTATTTC
* * ** * * * * * *
60235300 AAAAAAAAAAAGAAAAAATAAAAATGAAAAAAGAAAAAAGAAAAAAGAAAAACAAGAAAAAAGAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * * * * * * * * *
60235365 AAAAGAAAAAAGAAAAAAGAAAAAAGAAAAGAAAAAGAAAAAGAATAATAAAAAGAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
60235428 TGGAGAGGCC
Statistics
Matches: 88, Mismatches: 39, Indels: 0
0.69 0.31 0.00
Matches are distributed among these distances:
1 88 1.00
ACGTcount: A:0.84, C:0.01, G:0.12, T:0.03
Consensus pattern (1 bp):
A
Found at i:60235322 original size:14 final size:13
Alignment explanation
Indices: 60235300--60235427 Score: 127
Period size: 14 Copynumber: 9.5 Consensus size: 13
60235290 CTTCTATTTC
60235300 AAAAAAAAAAAGA
1 AAAAAAAAAAAGA
*
60235313 AAAAATAAAAATGA
1 AAAAA-AAAAAAGA
60235327 AAAAAGAAAAAAGAA
1 AAAAA-AAAAAAG-A
60235342 AAAAGAAAAACAAGA
1 AAAA-AAAAA-AAGA
60235357 AAAAAGAAAAAAGA
1 AAAAA-AAAAAAGA
60235371 AAAAAGAAAAAAG-
1 AAAAA-AAAAAAGA
*
60235384 AAAAAAGAAAAG-
1 AAAAAAAAAAAGA
*
60235396 AAAAAGAAAAAG-
1 AAAAAAAAAAAGA
* *
60235408 AATAATAAAAAGA
1 AAAAAAAAAAAGA
60235421 AAAAAAA
1 AAAAAAA
60235428 TGGAGAGGCC
Statistics
Matches: 99, Mismatches: 10, Indels: 12
0.82 0.08 0.10
Matches are distributed among these distances:
12 26 0.26
13 15 0.15
14 36 0.36
15 18 0.18
16 4 0.04
ACGTcount: A:0.84, C:0.01, G:0.12, T:0.03
Consensus pattern (13 bp):
AAAAAAAAAAAGA
Found at i:60235357 original size:44 final size:43
Alignment explanation
Indices: 60235300--60235425 Score: 159
Period size: 44 Copynumber: 2.9 Consensus size: 43
60235290 CTTCTATTTC
* *
60235300 AAAA-AAAAAAAGAAAAAATAAAAATGAAAAAAGAAAAAAGAA
1 AAAAGAAAAAAAGAAAAAAGAAAAAAGAAAAAAGAAAAAAGAA
60235342 AAAAGAAAAACAAGAAAAAAGAAAAAAGAAAAAAGAAAAAAGAA
1 AAAAGAAAAA-AAGAAAAAAGAAAAAAGAAAAAAGAAAAAAGAA
* * *
60235386 AAAAGAAAAGAAAAAGAAAAAG-AATAA-TAAAAAGAAAAAA
1 AAAAGAAAA-AAAGA-AAAAAGAAAAAAGAAAAAAGAAAAAA
60235426 AATGGAGAGG
Statistics
Matches: 75, Mismatches: 5, Indels: 7
0.86 0.06 0.08
Matches are distributed among these distances:
42 4 0.05
43 17 0.23
44 47 0.63
45 7 0.09
ACGTcount: A:0.84, C:0.01, G:0.12, T:0.03
Consensus pattern (43 bp):
AAAAGAAAAAAAGAAAAAAGAAAAAAGAAAAAAGAAAAAAGAA
Found at i:60235425 original size:7 final size:7
Alignment explanation
Indices: 60235300--60235406 Score: 150
Period size: 7 Copynumber: 15.6 Consensus size: 7
60235290 CTTCTATTTC
60235300 AAAAA-A
1 AAAAAGA
60235306 AAAAAGA
1 AAAAAGA
*
60235313 AAAAATA
1 AAAAAGA
*
60235320 AAAATGA
1 AAAAAGA
60235327 AAAAAGA
1 AAAAAGA
60235334 AAAAAGA
1 AAAAAGA
60235341 AAAAAGAA
1 AAAAAG-A
60235349 AAACAAGA
1 AAA-AAGA
60235357 AAAAAGA
1 AAAAAGA
60235364 AAAAAGA
1 AAAAAGA
60235371 AAAAAGA
1 AAAAAGA
60235378 AAAAAGA
1 AAAAAGA
60235385 AAAAAG-
1 AAAAAGA
60235391 -AAAAG-
1 AAAAAGA
60235396 AAAAAGA
1 AAAAAGA
60235403 AAAA
1 AAAA
60235407 GAATAATAAA
Statistics
Matches: 92, Mismatches: 4, Indels: 9
0.88 0.04 0.09
Matches are distributed among these distances:
5 5 0.05
6 10 0.11
7 66 0.72
8 8 0.09
9 3 0.03
ACGTcount: A:0.85, C:0.01, G:0.12, T:0.02
Consensus pattern (7 bp):
AAAAAGA
Found at i:60236378 original size:44 final size:44
Alignment explanation
Indices: 60236318--60237421 Score: 714
Period size: 44 Copynumber: 25.1 Consensus size: 44
60236308 CAAAAAAACA
*
60236318 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGC
1 AGATCTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGC
* * * * **
60236362 AGATCTGACA-CTCCTGT-TCTTACAGTGAAGTAGATCGAAGATTTC
1 AGATCTGGCATC-CCTGTGT-TTATAGGGAA-CAGATCGAAGATAGC
* *
60236407 AG--CATGGCATTCCTGTGTTTATAGGGAACA-AGTTGAAGATAGC
1 AGATC-TGGCATCCCTGTGTTTATAGGGAACAGA-TCGAAGATAGC
*
60236450 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGC
1 AGATCTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGC
* * * * * * * **
60236494 AGATCTGACA-CTCTTGTGCTTACAGCGAAGTAGATTGAAGATTTC
1 AGATCTGGCATC-CCTGTGTTTATAGGGAA-CAGATCGAAGATAGC
* * **
60236539 AG--CATGGAATCCCTGTG-TTATTGGGAACA-AGTTAAAGATAGC
1 AGATC-TGGCATCCCTGTGTTTATAGGGAACAGA-TCGAAGATAGC
*
60236581 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGC
1 AGATCTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGC
* * * * * **
60236625 AGATCTGACA-CTCTGTGCTTACAGCGAAGCAGATCGAAGATTTC
1 AGATCTGGCATCCCTGTGTTTATAGGGAA-CAGATCGAAGATAGC
* * * *
60236669 AG--CATGGCATCCTTGTGTTTATTGGAAACA-AGTTGAAGATAGC
1 AGATC-TGGCATCCCTGTGTTTATAGGGAACAGA-TCGAAGATAGC
* * *
60236712 AGATTTGGCATCCCTGTGTTTATAGGGAACAAATCAAAGATAGC
1 AGATCTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGC
** * * * **
60236756 AGATCTAACA-CTCCTGTGCTTACAGCGAAGCAGATCGAAGATTTC
1 AGATCTGGCATC-CCTGTGTTTATAGGGAA-CAGATCGAAGATAGC
*
60236801 A-A-CATGGCATCCCTGTGTTTATAGGGAACA-AGTTGAAGATAGC
1 AGATC-TGGCATCCCTGTGTTTATAGGGAACAGA-TCGAAGATAGC
* * *
60236844 AGATTTGGCATCCCTGTGTTTATAGGGAACAAATCAAAGATAGC
1 AGATCTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGC
* * ** * * **
60236888 AGATCTGACA-CTCCTGT-TCTTACAGTAAAGCAGGTTGAAGATTTC
1 AGATCTGGCATC-CCTGTGT-TTATAGGGAA-CAGATCGAAGATAGC
* * *
60236933 AG--CATGGCATCCCTGTGTTTATTGGGAACA-AGTTGAAGATAGA
1 AGATC-TGGCATCCCTGTGTTTATAGGGAACAGA-TCGAAGATAGC
* * * *
60236976 AAATTTGGTATCCCTGTGTTTATAGGGAACAGATCGAAGATAGT
1 AGATCTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGC
* * * * **
60237020 AGATCTGACA-CTCCTGTGCTTACAGTGAAGCAGATCGAAGATTTC
1 AGATCTGGCATC-CCTGTGTTTATAGGGAA-CAGATCGAAGATAGC
* * * *
60237065 AG--CATGGCATCCCTTTGTTTATTGGGAACA-AGTTGAATATAGC
1 AGATC-TGGCATCCCTGTGTTTATAGGGAACAGA-TCGAAGATAGC
* *
60237108 AGATTTGGCATCCTTGTGTTTATAGGGAACAGATCGAAGATAGC
1 AGATCTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGC
* * ** * **
60237152 AGATCT-G-ATACTCCTGTGCTTACAGCAAAGCAGATCAAAGATTTC
1 AGATCTGGCAT-C-CCTGTGTTTATAGGGAA-CAGATCGAAGATAGC
* * *
60237197 AG--CATGGCATCCCTATGTTTATTGGGAACA-AGTTG-AGAATAGC
1 AGATC-TGGCATCCCTGTGTTTATAGGGAACAGA-TCGAAG-ATAGC
* *
60237240 AGATTTGGCATCCATGTGTTTATAGGGAACAGATCGAAGATAGC
1 AGATCTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGC
* * * * * * ***
60237284 AGATCTGACATTCCTGTGCTTACAGTGAAACAGATCAAAGATTTT
1 AGATCTGGCATCCCTGTGTTTATAG-GGAACAGATCGAAGATAGC
*
60237329 A-A-CATGGCATCCCTGTGTTTATAGGGAACA-AGTTGAAGATAGC
1 AGATC-TGGCATCCCTGTGTTTATAGGGAACAGA-TCGAAGATAGC
* * * *
60237372 AGATTTGGCATCCCTGTGTTTACAGGGAAAAAATCGAAGACATAGC
1 AGATCTGGCATCCCTGTGTTTATAGGGAACAGATCGAAG--ATAGC
60237418 AGAT
1 AGAT
60237422 TTGACTTTTG
Statistics
Matches: 798, Mismatches: 190, Indels: 142
0.71 0.17 0.13
Matches are distributed among these distances:
41 1 0.00
42 22 0.03
43 129 0.16
44 524 0.66
45 111 0.14
46 11 0.01
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.28
Consensus pattern (44 bp):
AGATCTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGC
Found at i:60236555 original size:132 final size:132
Alignment explanation
Indices: 60236318--60237426 Score: 1738
Period size: 132 Copynumber: 8.4 Consensus size: 132
60236308 CAAAAAAACA
*
60236318 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGACACTCCTGTTCTT
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGACACTCCTGTGCTT
* * * *
60236383 ACAGTGAAGTAGATCGAAGATTTCAGCATGGCATTCCTGTGTTTATAGGGAACAAGTTGAAGATA
66 ACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATTGGGAACAAGTTGAAGATA
60236448 GC
131 GC
*
60236450 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGACACTCTTGTGCTT
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGACACTCCTGTGCTT
* * * *
60236515 ACAGCGAAGTAGATTGAAGATTTCAGCATGGAATCCCTGTG-TTATTGGGAACAAGTTAAAGATA
66 ACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATTGGGAACAAGTTGAAGATA
60236579 GC
131 GC
60236581 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGACACT-CTGTGCTT
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGACACTCCTGTGCTT
* *
60236645 ACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCTTGTGTTTATTGGAAACAAGTTGAAGATA
66 ACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATTGGGAACAAGTTGAAGATA
60236710 GC
131 GC
* * *
60236712 AGATTTGGCATCCCTGTGTTTATAGGGAACAAATCAAAGATAGCAGATCTAACACTCCTGTGCTT
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGACACTCCTGTGCTT
* *
60236777 ACAGCGAAGCAGATCGAAGATTTCAACATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
66 ACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATTGGGAACAAGTTGAAGATA
60236842 GC
131 GC
* * *
60236844 AGATTTGGCATCCCTGTGTTTATAGGGAACAAATCAAAGATAGCAGATCTGACACTCCTGTTCTT
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGACACTCCTGTGCTT
** * *
60236909 ACAGTAAAGCAGGTTGAAGATTTCAGCATGGCATCCCTGTGTTTATTGGGAACAAGTTGAAGATA
66 ACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATTGGGAACAAGTTGAAGATA
*
60236974 GA
131 GC
* * *
60236976 AAATTTGGTATCCCTGTGTTTATAGGGAACAGATCGAAGATAGTAGATCTGACACTCCTGTGCTT
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGACACTCCTGTGCTT
* * *
60237041 ACAGTGAAGCAGATCGAAGATTTCAGCATGGCATCCCTTTGTTTATTGGGAACAAGTTGAATATA
66 ACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATTGGGAACAAGTTGAAGATA
60237106 GC
131 GC
* *
60237108 AGATTTGGCATCCTTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGATACTCCTGTGCTT
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGACACTCCTGTGCTT
* * *
60237173 ACAGCAAAGCAGATCAAAGATTTCAGCATGGCATCCCTATGTTTATTGGGAACAAGTTG-AGAAT
66 ACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATTGGGAACAAGTTGAAG-AT
60237237 AGC
130 AGC
* *
60237240 AGATTTGGCATCCATGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGACATTCCTGTGCTT
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGACACTCCTGTGCTT
* * * * * *
60237305 ACAGTGAAACAGATCAAAGATTTTAACATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
66 ACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATTGGGAACAAGTTGAAGATA
60237370 GC
131 GC
* * * *
60237372 AGATTTGGCATCCCTGTGTTTACAGGGAAAAAATCGAAGACATAGCAGATTTGAC
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAG--ATAGCAGATCTGAC
60237427 TTTTGGATGT
Statistics
Matches: 903, Mismatches: 68, Indels: 10
0.92 0.07 0.01
Matches are distributed among these distances:
130 44 0.05
131 156 0.17
132 688 0.76
133 2 0.00
134 13 0.01
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.28
Consensus pattern (132 bp):
AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGACACTCCTGTGCTT
ACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATTGGGAACAAGTTGAAGATA
GC
Found at i:60238074 original size:19 final size:19
Alignment explanation
Indices: 60238050--60238147 Score: 155
Period size: 19 Copynumber: 5.2 Consensus size: 19
60238040 AATCTTTAAA
60238050 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
60238069 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
60238088 GATA--AAATCTTAGATAT
1 GATATGCAATCTTAGATAT
60238105 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
60238124 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
60238145 GAT
1 GAT
60238148 CTTGTAATCT
Statistics
Matches: 73, Mismatches: 2, Indels: 6
0.90 0.02 0.07
Matches are distributed among these distances:
17 16 0.22
19 48 0.66
21 9 0.12
ACGTcount: A:0.39, C:0.09, G:0.16, T:0.36
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:60238080 original size:36 final size:35
Alignment explanation
Indices: 60238040--60238147 Score: 117
Period size: 36 Copynumber: 2.9 Consensus size: 35
60238030 ATGGAAATAT
60238040 AATCTTTAAAGATATGCAATCTTAGATATGATATGC
1 AATC-TTAAAGATATGCAATCTTAGATATGATATGC
* * **
60238076 AATCTTAGATATGATAAAATCTTAGATATGATATGC
1 AATCTTAAAGAT-ATGCAATCTTAGATATGATATGC
60238112 AATCTTAGATATGATATGCAATCTTGAAGATATGAT
1 AATCTTA-A-A-GATATGCAATCTT--AGATATGAT
60238148 CTTGTAATCT
Statistics
Matches: 58, Mismatches: 8, Indels: 8
0.78 0.11 0.11
Matches are distributed among these distances:
35 6 0.10
36 32 0.55
38 9 0.16
39 2 0.03
40 9 0.16
ACGTcount: A:0.40, C:0.09, G:0.15, T:0.36
Consensus pattern (35 bp):
AATCTTAAAGATATGCAATCTTAGATATGATATGC
Found at i:60238463 original size:28 final size:28
Alignment explanation
Indices: 60238432--60238489 Score: 116
Period size: 28 Copynumber: 2.1 Consensus size: 28
60238422 TCAAATATGT
60238432 ATATTTATTCCTATCTTTTATACATTTG
1 ATATTTATTCCTATCTTTTATACATTTG
60238460 ATATTTATTCCTATCTTTTATACATTTG
1 ATATTTATTCCTATCTTTTATACATTTG
60238488 AT
1 AT
60238490 TATGTATTTT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.26, C:0.14, G:0.03, T:0.57
Consensus pattern (28 bp):
ATATTTATTCCTATCTTTTATACATTTG
Found at i:60238508 original size:28 final size:28
Alignment explanation
Indices: 60238432--60238509 Score: 77
Period size: 28 Copynumber: 2.8 Consensus size: 28
60238422 TCAAATATGT
* * *
60238432 ATATTTATTCCTATCTTTTATACATTTG
1 ATATGTATTCCTATATATTATACATTTG
* * *
60238460 ATATTTATTCCTATCTTTTATACATTTG
1 ATATGTATTCCTATATATTATACATTTG
*
60238488 ATTATGTATT-TTATATATTATA
1 A-TATGTATTCCTATATATTATA
60238510 ATATTTAACC
Statistics
Matches: 45, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
28 38 0.84
29 7 0.16
ACGTcount: A:0.28, C:0.10, G:0.04, T:0.58
Consensus pattern (28 bp):
ATATGTATTCCTATATATTATACATTTG
Found at i:60240418 original size:43 final size:43
Alignment explanation
Indices: 60240371--60240529 Score: 121
Period size: 43 Copynumber: 3.7 Consensus size: 43
60240361 AACTCGTACA
*
60240371 ATGCCAACGTCCTAGACGTGGTCTTACATGTAATCAAATATCG
1 ATGCCAACGTCCTAGACGTGGTCTTACACGTAATCAAATATCG
* * * * *
60240414 ATGCC-ACTATCCCAAATAG-GGTCTTACACGAAATCAAATAT-G
1 ATGCCAAC-GTCCTAGA-CGTGGTCTTACACGTAATCAAATATCG
* * * * * *
60240456 ATGTCGATGTCCTAGACATGGTCTTGCACGTAAATCTCAA-ATCG
1 ATGCCAACGTCCTAGACGTGGTCTTACACGT-AATC-AAATATCG
*
60240500 ATGCCAACGT-CTCAGGCGTGGTCTTACACG
1 ATGCCAACGTCCT-AGACGTGGTCTTACACG
60240530 ATAACACACC
Statistics
Matches: 86, Mismatches: 22, Indels: 15
0.70 0.18 0.12
Matches are distributed among these distances:
42 22 0.26
43 39 0.45
44 25 0.29
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (43 bp):
ATGCCAACGTCCTAGACGTGGTCTTACACGTAATCAAATATCG
Found at i:60248043 original size:43 final size:42
Alignment explanation
Indices: 60247932--60248077 Score: 145
Period size: 43 Copynumber: 3.4 Consensus size: 42
60247922 AATGCCAACA
* *
60247932 TCCCAGACGTGGTCTTACATGT-AATCAAATATCGATGCCACTG
1 TCCCAGACATGGTCTTACATGTAAATCAAATA-CGATG-CAATG
* * *
60247975 CCCCAGACAAGGTCTTACATG-AAATCAAATACGATGTCGATG
1 TCCCAGACATGGTCTTACATGTAAATCAAATACGATG-CAATG
* *
60248017 TCCTAGACATGGTCTTACACGTAAATCTCAAAT-CGATGCTAATG
1 TCCCAGACATGGTCTTACATGTAAA--TCAAATACGATGC-AATG
*
60248061 TCCCAGACGTGGTCTTA
1 TCCCAGACATGGTCTTA
60248078 AAGGTAACAC
Statistics
Matches: 85, Mismatches: 13, Indels: 9
0.79 0.12 0.08
Matches are distributed among these distances:
42 25 0.29
43 31 0.36
44 23 0.27
45 6 0.07
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (42 bp):
TCCCAGACATGGTCTTACATGTAAATCAAATACGATGCAATG
Found at i:60248074 original size:44 final size:44
Alignment explanation
Indices: 60247932--60248077 Score: 133
Period size: 42 Copynumber: 3.4 Consensus size: 44
60247922 AATGCCAACA
* * * *
60247932 TCCCAGACGTGGTCTTACATGT-AATC-AAATATCGATGCCACTG
1 TCCCAGACATGGTCTTACATGTAAATCTCAA-ATCGATGCTAATG
* * *
60247975 CCCCAGACAAGGTCTTACATG-AAA--TCAAATACGATG-TCGATG
1 TCCCAGACATGGTCTTACATGTAAATCTCAAAT-CGATGCT-AATG
* *
60248017 TCCTAGACATGGTCTTACACGTAAATCTCAAATCGATGCTAATG
1 TCCCAGACATGGTCTTACATGTAAATCTCAAATCGATGCTAATG
*
60248061 TCCCAGACGTGGTCTTA
1 TCCCAGACATGGTCTTA
60248078 AAGGTAACAC
Statistics
Matches: 81, Mismatches: 14, Indels: 15
0.74 0.13 0.14
Matches are distributed among these distances:
41 2 0.02
42 26 0.32
43 23 0.28
44 23 0.28
45 7 0.09
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (44 bp):
TCCCAGACATGGTCTTACATGTAAATCTCAAATCGATGCTAATG
Found at i:60250811 original size:20 final size:20
Alignment explanation
Indices: 60250786--60250830 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
60250776 AGGGACTAAA
*
60250786 ATGAAAAGTTATAAAATTTG
1 ATGAAAAATTATAAAATTTG
* *
60250806 ATGAAAAATTCTAAAATTTT
1 ATGAAAAATTATAAAATTTG
60250826 ATGAA
1 ATGAA
60250831 CTCATGTGCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.51, C:0.02, G:0.11, T:0.36
Consensus pattern (20 bp):
ATGAAAAATTATAAAATTTG
Found at i:60252730 original size:21 final size:21
Alignment explanation
Indices: 60252704--60252759 Score: 85
Period size: 21 Copynumber: 2.7 Consensus size: 21
60252694 ACGGCCTCTA
60252704 ACACGGACGTGTCCTAGGGTC
1 ACACGGACGTGTCCTAGGGTC
*
60252725 ACACGGGCGTGTCCTAGGGTC
1 ACACGGACGTGTCCTAGGGTC
* *
60252746 ACATGGATGTGTCC
1 ACACGGACGTGTCC
60252760 CTTGAACCAC
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.18, C:0.27, G:0.34, T:0.21
Consensus pattern (21 bp):
ACACGGACGTGTCCTAGGGTC
Found at i:60259862 original size:25 final size:25
Alignment explanation
Indices: 60259825--60259908 Score: 73
Period size: 25 Copynumber: 3.2 Consensus size: 25
60259815 ACATAACAAT
*
60259825 TAAAAAAT-TATATTTTAAAAAAAA
1 TAAAAAATAAATATTTTAAAAAAAA
**
60259849 TAAAAAATAAATATAATCTTTTAAAAAA
1 TAAAAAATAAATAT--T-TTAAAAAAAA
*
60259877 TAAAAAAATATAAT-TTTTAAAAAAAT
1 T-AAAAAATA-AATATTTTAAAAAAAA
60259903 TAAAAA
1 TAAAAA
60259909 TTAAGAAAAA
Statistics
Matches: 48, Mismatches: 6, Indels: 11
0.74 0.09 0.17
Matches are distributed among these distances:
24 8 0.17
25 9 0.19
26 8 0.17
27 2 0.04
28 9 0.19
29 9 0.19
30 3 0.06
ACGTcount: A:0.67, C:0.01, G:0.00, T:0.32
Consensus pattern (25 bp):
TAAAAAATAAATATTTTAAAAAAAA
Found at i:60259909 original size:24 final size:25
Alignment explanation
Indices: 60259843--60259900 Score: 82
Period size: 24 Copynumber: 2.2 Consensus size: 25
60259833 TATATTTTAA
60259843 AAAAAATAAAAAATAAATATAATCTTTT
1 AAAAAAT--AAAA-AAATATAATCTTTT
60259871 AAAAAATAAAAAAATATAAT-TTTT
1 AAAAAATAAAAAAATATAATCTTTT
60259895 AAAAAA
1 AAAAAA
60259901 ATTAAAAATT
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
24 10 0.33
25 9 0.30
26 4 0.13
28 7 0.23
ACGTcount: A:0.69, C:0.02, G:0.00, T:0.29
Consensus pattern (25 bp):
AAAAAATAAAAAAATATAATCTTTT
Found at i:60259917 original size:17 final size:16
Alignment explanation
Indices: 60259870--60259927 Score: 53
Period size: 17 Copynumber: 3.5 Consensus size: 16
60259860 TATAATCTTT
*
60259870 TAAAAAATAAAAAAATA
1 TAAAAATTAAAAAAA-A
*** *
60259887 TAATTTTTAAAAAAAT
1 TAAAAATTAAAAAAAA
60259903 TAAAAATTAAGAAAAAA
1 TAAAAATTAA-AAAAAA
60259920 TAAAAATT
1 TAAAAATT
60259928 CTTAAAAATT
Statistics
Matches: 31, Mismatches: 9, Indels: 2
0.74 0.21 0.05
Matches are distributed among these distances:
16 7 0.23
17 24 0.77
ACGTcount: A:0.71, C:0.00, G:0.02, T:0.28
Consensus pattern (16 bp):
TAAAAATTAAAAAAAA
Found at i:60259924 original size:25 final size:24
Alignment explanation
Indices: 60259894--60259951 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 24
60259884 ATATAATTTT
* *
60259894 TAAAAAAATTAAAAATTAAGAAAAAA
1 TAAAAATATTAAAAATT--CAAAAAA
*
60259920 TAAAAATTCTTAAAAATTCAAAAAA
1 TAAAAA-TATTAAAAATTCAAAAAA
60259945 TAAAAAT
1 TAAAAAT
60259952 CATTTTAAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
24 1 0.04
25 12 0.43
26 6 0.21
27 9 0.32
ACGTcount: A:0.71, C:0.03, G:0.02, T:0.24
Consensus pattern (24 bp):
TAAAAATATTAAAAATTCAAAAAA
Found at i:60259935 original size:18 final size:17
Alignment explanation
Indices: 60259877--60259935 Score: 57
Period size: 17 Copynumber: 3.4 Consensus size: 17
60259867 TTTTAAAAAA
* *
60259877 TAAAAAAATATAATTTT
1 TAAAAAAATAAAAATTT
60259894 TAAAAAAATTAAAAA-TT
1 TAAAAAAA-TAAAAATTT
*
60259911 AAGAAAAAATAAAAATTCT
1 TA-AAAAAATAAAAATT-T
60259930 TAAAAA
1 TAAAAA
60259936 TTCAAAAAAT
Statistics
Matches: 34, Mismatches: 4, Indels: 7
0.76 0.09 0.16
Matches are distributed among these distances:
17 17 0.50
18 15 0.44
19 2 0.06
ACGTcount: A:0.68, C:0.02, G:0.02, T:0.29
Consensus pattern (17 bp):
TAAAAAAATAAAAATTT
Found at i:60271215 original size:15 final size:15
Alignment explanation
Indices: 60271192--60271221 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
60271182 ACATGTACAT
*
60271192 ATATTTTTTCATGTC
1 ATATATTTTCATGTC
60271207 ATATATTTTCATGTC
1 ATATATTTTCATGTC
60271222 GTAATTGCTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.23, C:0.13, G:0.07, T:0.57
Consensus pattern (15 bp):
ATATATTTTCATGTC
Found at i:60278093 original size:33 final size:33
Alignment explanation
Indices: 60277996--60278094 Score: 171
Period size: 33 Copynumber: 3.0 Consensus size: 33
60277986 TTTCTTCTCG
*
60277996 ACATTCCAGCTCCTGTCCAGCAACAAAACACCC
1 ACATTCCAGCTCCTGTCCAGCAACAAAACACTC
*
60278029 ACATTCCAGCTCCTGTCCAGCAGCAAAACACTC
1 ACATTCCAGCTCCTGTCCAGCAACAAAACACTC
*
60278062 ACATTCCAGCTCCTGTCCAGCAACCAAACACTC
1 ACATTCCAGCTCCTGTCCAGCAACAAAACACTC
60278095 CCACTCAGTC
Statistics
Matches: 62, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 62 1.00
ACGTcount: A:0.31, C:0.41, G:0.10, T:0.17
Consensus pattern (33 bp):
ACATTCCAGCTCCTGTCCAGCAACAAAACACTC
Done.