Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 187 of 349
Found at i:60601323 original size:79 final size:80
Alignment explanation
Indices: 60601128--60601346 Score: 218
Period size: 79 Copynumber: 2.8 Consensus size: 80
60601118 TTGAATGCTG
* * * *
60601128 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACT-ATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCTTTGT-ATGAGTTACTAATATCCGGACTAAGATCCGAAGGCATT
* *
60601192 TGTGCGAGTTATTAAT
65 CGTGCGAGTTATTAAA
** * **
60601208 TCCGGGTTAAGT-CCGAAGGCCTTTGTGCGAGATACTAAT-TCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGG-CTTTGTATGAGTTACTAATATCCGGACTAAGAT-CCGAAGGCAT
60601270 TCGTGCGAGTT-TTAAAA
64 TCGTGCGAGTTATT-AAA
* * * *
60601287 TCCGGGTTAAGTCCCGAAGGCATTGTATGAGTTACT-ATAACCGGGCTATG-TCCGAAGGCA
1 TCCGGGTTAAGTCCCGAAGGCTTTGTATGAGTTACTAATATCCGGACTAAGATCCGAAGGCA
60601347 CTTGAACGAG
Statistics
Matches: 116, Mismatches: 17, Indels: 14
0.79 0.12 0.10
Matches are distributed among these distances:
78 14 0.12
79 76 0.66
80 26 0.22
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTATGAGTTACTAATATCCGGACTAAGATCCGAAGGCATTC
GTGCGAGTTATTAAA
Found at i:60601331 original size:39 final size:38
Alignment explanation
Indices: 60601129--60601346 Score: 156
Period size: 40 Copynumber: 5.5 Consensus size: 38
60601119 TGAATGCTGT
* * * *
60601129 CCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATAT
1 CCGGGCTAAGT-CCGAAGGCATTGTGC-GAGTTACTATAA
*
60601169 CCGGACTAAGATCCGAAGGCATTTGTGCGAGTTA-T-TAA
1 CCGGGCTAAG-TCCGAAGGCA-TTGTGCGAGTTACTATAA
* * * *
60601207 TTCCGGGTTAAGTCCGAAGGCCTTTGTGCGAGATACTA-ATT
1 --CCGGGCTAAGTCCGAAGG-CATTGTGCGAGTTACTATA-A
* * *
60601248 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 CCGGGCTAAGT-CCGAAGGCATT-GTGCGAGTTACTATAA
* **
60601287 TCCGGGTTAAGTCCCGAAGGCATTGTATGAGTTACTATAA
1 -CCGGGCTAAGT-CCGAAGGCATTGTGCGAGTTACTATAA
*
60601327 CCGGGCTATGTCCGAAGGCA
1 CCGGGCTAAGTCCGAAGGCA
60601347 CTTGAACGAG
Statistics
Matches: 145, Mismatches: 20, Indels: 28
0.75 0.10 0.15
Matches are distributed among these distances:
38 11 0.08
39 52 0.36
40 75 0.52
41 7 0.05
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (38 bp):
CCGGGCTAAGTCCGAAGGCATTGTGCGAGTTACTATAA
Found at i:60608206 original size:79 final size:82
Alignment explanation
Indices: 60608095--60608279 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
60608085 GCTACTCGTT
* * *
60608095 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
60608158 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
60608175 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
60608238 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
60608255 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
60608280 CATCATTCAA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:60608279 original size:40 final size:40
Alignment explanation
Indices: 60608076--60608279 Score: 229
Period size: 40 Copynumber: 5.1 Consensus size: 40
60608066 CGGAATTTAA
** *
60608076 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
60608116 CCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
60608156 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
60608195 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
60608235 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
60608275 CCGGA
1 CCGGA
60608280 CATCATTCAA
Statistics
Matches: 139, Mismatches: 18, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.24
40 92 0.66
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:60611255 original size:140 final size:138
Alignment explanation
Indices: 60611025--60611374 Score: 368
Period size: 140 Copynumber: 2.5 Consensus size: 138
60611015 TAATGTTTCT
* * * *
60611025 ATCCTTGAGTCTTGGGTTTGATTTCTCTTCTACTCACATTTGTATTTTTTATTTCATGTTGCTTC
1 ATCCTTGAGTCTTAGG-TTCAATTCT-TTCTACTCATATTTGTATTTTTTATTTCATGTTGCTTC
* *
60611090 AGGCTTTTTAAAATTTTAATTAA-TTTTT-TTAAACATATTAGTTCTTTAGTTAGATGGTTAGAT
64 AAG-TTTTT-AAATTTTAATTAATTTTTTCTTAAACATACTAGTTCTTTAGTTAGATGGTTAGAT
* *
60611153 AGTTGCAAATAC
127 AATTACAAATAC
* *
60611165 ATCCTTGAGTCTTAGGTTCAAATTCTTTCCTACTTATATTTATATTTTTTATTTCATGTTGCTTC
1 ATCCTTGAGTCTTAGGTTC-AATTCTTT-CTACTCATATTTGTATTTTTTATTTCATGTTGCTTC
** * * * * *
60611230 AAGTTTTT-TTTTTTAATTTTAAATTTTTTCTTTAATATACTAGTTCTTTCGTTGGATGGTTATA
64 AAGTTTTTAAATTTTAA--TT-AATTTTTTCTTAAACATACTAGTTCTTTAGTTAGATGGTTAGA
*
60611294 TAATTACAATTAC
126 TAATTACAAATAC
* * * *
60611307 ATCCTT-AGTCTCAAGTTCAATTCCTTTACTACTCATATTTGTA-TTTTTATTTTATGTTACTTC
1 ATCCTTGAGTCTTAGGTTCAATT-CTTT-CTACTCATATTTGTATTTTTTATTTCATGTTGCTTC
60611370 AAGTT
64 AAGTT
60611375 AGAAGCAACA
Statistics
Matches: 177, Mismatches: 25, Indels: 16
0.81 0.11 0.07
Matches are distributed among these distances:
137 6 0.03
139 11 0.06
140 84 0.47
141 32 0.18
142 44 0.25
ACGTcount: A:0.24, C:0.13, G:0.11, T:0.52
Consensus pattern (138 bp):
ATCCTTGAGTCTTAGGTTCAATTCTTTCTACTCATATTTGTATTTTTTATTTCATGTTGCTTCAA
GTTTTTAAATTTTAATTAATTTTTTCTTAAACATACTAGTTCTTTAGTTAGATGGTTAGATAATT
ACAAATAC
Found at i:60613170 original size:21 final size:22
Alignment explanation
Indices: 60613144--60613189 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
60613134 ATTATTATCG
60613144 TAAAAGAG-TAACATTCAAAAT
1 TAAAAGAGATAACATTCAAAAT
* **
60613165 TAAAAGGGATAAGTTTCAAAAT
1 TAAAAGAGATAACATTCAAAAT
60613187 TAA
1 TAA
60613190 TATGGGTCGG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 7 0.33
22 14 0.67
ACGTcount: A:0.54, C:0.07, G:0.13, T:0.26
Consensus pattern (22 bp):
TAAAAGAGATAACATTCAAAAT
Found at i:60613380 original size:25 final size:26
Alignment explanation
Indices: 60613352--60613402 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
60613342 CTTATTTCAT
60613352 TAAATAAAAAAT-TTTAAAAACATAA
1 TAAATAAAAAATATTTAAAAACATAA
* *
60613377 TAAATCAAATATATTTAAAAACATAA
1 TAAATAAAAAATATTTAAAAACATAA
60613403 AAACAAATAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 10 0.43
26 13 0.57
ACGTcount: A:0.65, C:0.06, G:0.00, T:0.29
Consensus pattern (26 bp):
TAAATAAAAAATATTTAAAAACATAA
Found at i:60613395 original size:26 final size:24
Alignment explanation
Indices: 60613364--60613412 Score: 80
Period size: 26 Copynumber: 2.0 Consensus size: 24
60613354 AATAAAAAAT
60613364 TTTAAAAACATAATAAATCAAATATA
1 TTTAAAAACATAA-AAA-CAAATATA
60613390 TTTAAAAACATAAAAACAAATAT
1 TTTAAAAACATAAAAACAAATAT
60613413 TAAAACAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
24 7 0.30
25 3 0.13
26 13 0.57
ACGTcount: A:0.63, C:0.08, G:0.00, T:0.29
Consensus pattern (24 bp):
TTTAAAAACATAAAAACAAATATA
Found at i:60616873 original size:56 final size:58
Alignment explanation
Indices: 60616781--60616934 Score: 152
Period size: 56 Copynumber: 2.7 Consensus size: 58
60616771 TTGGATAAAG
* * * * ** *
60616781 AAAATTTGAAGTCCCAATATGAGAATATTTATCAAGTTCAGGGCCTAACTTG-A-AAAA
1 AAAATTT-AAGCCCCAATGTGAGAAAAATTGCCAAGTTCAGGACCTAACTTGAACAAAA
* *
60616838 AAAATTTAAGCCCCAATGTGAGAACAATTGCCAAGTTCAGGACCTAATTTGAACAAAA
1 AAAATTTAAGCCCCAATGTGAGAAAAATTGCCAAGTTCAGGACCTAACTTGAACAAAA
* * * *
60616896 AAAATTGAAACCCCATTGTG-GAAAAAGTTGCTAAGTTCA
1 AAAATTTAAGCCCCAATGTGAGAAAAA-TTGCCAAGTTCA
60616935 AGTCTTAAAA
Statistics
Matches: 81, Mismatches: 13, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
56 36 0.44
57 13 0.16
58 32 0.40
ACGTcount: A:0.42, C:0.16, G:0.16, T:0.25
Consensus pattern (58 bp):
AAAATTTAAGCCCCAATGTGAGAAAAATTGCCAAGTTCAGGACCTAACTTGAACAAAA
Found at i:60616932 original size:58 final size:56
Alignment explanation
Indices: 60616813--60616934 Score: 147
Period size: 58 Copynumber: 2.1 Consensus size: 56
60616803 GAATATTTAT
* * * *
60616813 CAAGTTCAGGGCCTAACTTGAAAAAAAAATTTAAGCCCCAATGTGAGAACAATTGC
1 CAAGTTCAGGACCTAACTTGAAAAAAAAATTGAAACCCCAATGTGAGAAAAATTGC
* *
60616869 CAAGTTCAGGACCTAATTTGAACAAAAAAAATTGAAACCCCATTGTG-GAAAAAGTTGC
1 CAAGTTCAGGACCTAACTTG-A-AAAAAAAATTGAAACCCCAATGTGAGAAAAA-TTGC
*
60616927 TAAGTTCA
1 CAAGTTCA
60616935 AGTCTTAAAA
Statistics
Matches: 56, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
56 18 0.32
57 6 0.11
58 32 0.57
ACGTcount: A:0.42, C:0.18, G:0.17, T:0.23
Consensus pattern (56 bp):
CAAGTTCAGGACCTAACTTGAAAAAAAAATTGAAACCCCAATGTGAGAAAAATTGC
Found at i:60617343 original size:21 final size:21
Alignment explanation
Indices: 60617319--60617373 Score: 56
Period size: 21 Copynumber: 2.6 Consensus size: 21
60617309 AAAAACTTTC
* *
60617319 AAAATTAATTTTTAGATATAT
1 AAAATTAATTTTAAAATATAT
** *
60617340 AAAACAAAATTTAAAATATAT
1 AAAATTAATTTTAAAATATAT
*
60617361 AAAATTTATTTTA
1 AAAATTAATTTTA
60617374 CCGTGAAAAA
Statistics
Matches: 25, Mismatches: 9, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.42
Consensus pattern (21 bp):
AAAATTAATTTTAAAATATAT
Found at i:60620993 original size:47 final size:46
Alignment explanation
Indices: 60620920--60621188 Score: 178
Period size: 47 Copynumber: 5.8 Consensus size: 46
60620910 TGGGTAAGGA
* * *
60620920 GCCGATGCCATGTCCCAGACACGGTCTTACACTAG-TTCATATCTCAT
1 GCCGATGCCATGTCCCAGACA-TGTCTTACACTAGCTACATCT-TCAT
* * * * *
60620967 GTCGATGCCATGTCCTAGACATGGTCTCACACTAACTATCATC-TCGT
1 GCCGATGCCATGTCCCAGACAT-GTCTTACACTAGCTA-CATCTTCAT
* * *
60621014 AGCCAATG-CATGTCCCAGACATGTCTTACAC-AGGCTTACATCTTGAG
1 -GCCGATGCCATGTCCCAGACATGTCTTACACTA-GC-TACATCTTCAT
* * *
60621061 GTCGATG-CATGTCCTAGACATGTCTTACACTAGC-ACCCATCTTGAT
1 GCCGATGCCATGTCCCAGACATGTCTTACACTAGCTA--CATCTTCAT
* * ** *
60621107 GCCAATGCCATGTCCCAGACATAGTCTTACACTGGCCCT-CATAAT-GT
1 GCCGATGCCATGTCCCAGACAT-GTCTTACACTAG--CTACATCTTCAT
*
60621154 GGCTGATG-CATGTCCCAGACATGTCTTACACTAGC
1 -GCCGATGCCATGTCCCAGACATGTCTTACACTAGC
60621189 CCACAATAAC
Statistics
Matches: 176, Mismatches: 30, Indels: 35
0.73 0.12 0.15
Matches are distributed among these distances:
44 2 0.01
45 1 0.01
46 66 0.38
47 77 0.44
48 26 0.15
49 3 0.02
50 1 0.01
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.28
Consensus pattern (46 bp):
GCCGATGCCATGTCCCAGACATGTCTTACACTAGCTACATCTTCAT
Found at i:60621073 original size:46 final size:44
Alignment explanation
Indices: 60621019--60621184 Score: 154
Period size: 46 Copynumber: 3.6 Consensus size: 44
60621009 CTCGTAGCCA
*
60621019 ATGCATGTCCCAGACATGTCTTACACAGGCTTACATCTTGAGGTCG
1 ATGCATGTCCCAGACATGTCTTACACAGGCAT-CATCTTGAGG-CG
* * * *
60621065 ATGCATGTCCTAGACATGTCTTACACTA-GCACCCATCTTGATGCCA
1 ATGCATGTCCCAGACATGTCTTACAC-AGGCA-TCATCTTGA-GGCG
* * ** *
60621111 ATGCCATGTCCCAGACATAGTCTTACACTGGCCCTCATAATGTGGCTG
1 ATG-CATGTCCCAGACAT-GTCTTACACAGG-CATCATCTTGAGGC-G
60621159 ATGCATGTCCCAGACATGTCTTACAC
1 ATGCATGTCCCAGACATGTCTTACAC
60621185 TAGCCCACAA
Statistics
Matches: 98, Mismatches: 14, Indels: 16
0.77 0.11 0.12
Matches are distributed among these distances:
46 48 0.49
47 31 0.32
48 18 0.18
49 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.28
Consensus pattern (44 bp):
ATGCATGTCCCAGACATGTCTTACACAGGCATCATCTTGAGGCG
Found at i:60621175 original size:94 final size:92
Alignment explanation
Indices: 60620967--60621188 Score: 245
Period size: 94 Copynumber: 2.4 Consensus size: 92
60620957 CATATCTCAT
* * * * *
60620967 GTCGATGCCATGTCCTAGACATGGTCTCACACTAACTA-TCATCTCG-TAGCCAATGCATGTCCC
1 GTCGATG-CATGTCCCAGACAT-GTCTTACACTAGC-ACCCATCTTGAT-GCCAATGCATGTCCC
* **
60621030 AGACATGTCTTACACAGGCTTACATCTTGAG
62 AGACATGTCTTACACAGGCCTACATAATGAG
*
60621061 GTCGATGCATGTCCTAGACATGTCTTACACTAGCACCCATCTTGATGCCAATGCCATGTCCCAGA
1 GTCGATGCATGTCCCAGACATGTCTTACACTAGCACCCATCTTGATGCCAATG-CATGTCCCAGA
* *
60621126 CATAGTCTTACACTGGCCCT-CATAATGTG
65 CAT-GTCTTACACAGG-CCTACATAATGAG
60621155 G-CTGATGCATGTCCCAGACATGTCTTACACTAGC
1 GTC-GATGCATGTCCCAGACATGTCTTACACTAGC
60621189 CCACAATAAC
Statistics
Matches: 112, Mismatches: 10, Indels: 12
0.84 0.07 0.09
Matches are distributed among these distances:
91 1 0.01
92 24 0.21
93 30 0.27
94 55 0.49
95 2 0.02
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.27
Consensus pattern (92 bp):
GTCGATGCATGTCCCAGACATGTCTTACACTAGCACCCATCTTGATGCCAATGCATGTCCCAGAC
ATGTCTTACACAGGCCTACATAATGAG
Found at i:60625351 original size:25 final size:25
Alignment explanation
Indices: 60625323--60625373 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
60625313 CACTAAAGCT
*
60625323 AAGTAAGCTTCATATCCTTTTCTCA
1 AAGTAAGCTTCATATCATTTTCTCA
*
60625348 AAGTAAGCTTCATGTCATTTTCTCA
1 AAGTAAGCTTCATATCATTTTCTCA
60625373 A
1 A
60625374 CTATTTCTCA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.29, C:0.22, G:0.10, T:0.39
Consensus pattern (25 bp):
AAGTAAGCTTCATATCATTTTCTCA
Found at i:60628638 original size:47 final size:48
Alignment explanation
Indices: 60628549--60628667 Score: 129
Period size: 47 Copynumber: 2.5 Consensus size: 48
60628539 GGTAAAGAGC
* * * *
60628549 TGATGCCATGTCCCAGACACGGTCCTACGCTAGCTTAAATCTCAT-GT
1 TGATGCCATGTCCCAGACATGGTCTTACACTAACTTAAATCTCATAGT
* * *
60628596 TGATGCCATGTCCTAGACATGGTCTTACACTAAC-TATCATCTCGTAGT
1 TGATGCCATGTCCCAGACATGGTCTTACACTAACTTA-AATCTCATAGT
*
60628644 CGATG-CATGTCCCAGACAT-GTCTT
1 TGATGCCATGTCCCAGACATGGTCTT
60628668 CTACAGGCTT
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
46 7 0.11
47 48 0.79
48 6 0.10
ACGTcount: A:0.24, C:0.28, G:0.18, T:0.30
Consensus pattern (48 bp):
TGATGCCATGTCCCAGACATGGTCTTACACTAACTTAAATCTCATAGT
Found at i:60630343 original size:26 final size:26
Alignment explanation
Indices: 60630314--60630383 Score: 79
Period size: 26 Copynumber: 2.7 Consensus size: 26
60630304 ACACGTCAGA
* *
60630314 AAATGGAAATCTTTGTGGGGTATCTG
1 AAATGGAAACCTTTGTGGGGTATCCG
* *
60630340 AAATGGAAGCCTTTGTGGTGTATCCG
1 AAATGGAAACCTTTGTGGGGTATCCG
*
60630366 AAAT-GAAAGCTTTTGTGG
1 AAATGGAAA-CCTTTGTGG
60630384 CAATATATGA
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
25 3 0.08
26 34 0.92
ACGTcount: A:0.27, C:0.10, G:0.30, T:0.33
Consensus pattern (26 bp):
AAATGGAAACCTTTGTGGGGTATCCG
Found at i:60630419 original size:27 final size:26
Alignment explanation
Indices: 60630338--60630419 Score: 69
Period size: 27 Copynumber: 3.1 Consensus size: 26
60630328 GTGGGGTATC
*
60630338 TGAAATGGAAGCCTTTGTGGTGTATC--
1 TGAAAT-GAAGCCTTTGTGGCG-ATCTA
* * * *
60630364 CGAAATGAAAGCTTTTGTGGCAATATA
1 TGAAATG-AAGCCTTTGTGGCGATCTA
60630391 TGAAATCGAAGCCTTTGTGGCGATCTA
1 TGAAAT-GAAGCCTTTGTGGCGATCTA
60630418 TG
1 TG
60630420 GGAAGGGAGG
Statistics
Matches: 43, Mismatches: 9, Indels: 7
0.73 0.15 0.12
Matches are distributed among these distances:
25 3 0.07
26 16 0.37
27 23 0.53
28 1 0.02
ACGTcount: A:0.28, C:0.13, G:0.27, T:0.32
Consensus pattern (26 bp):
TGAAATGAAGCCTTTGTGGCGATCTA
Found at i:60647894 original size:39 final size:39
Alignment explanation
Indices: 60647840--60647918 Score: 158
Period size: 39 Copynumber: 2.0 Consensus size: 39
60647830 AGGTTAGTCA
60647840 TTCAACCTAGCTAGGAAGCCTCTCAATTGTCATTGTTTT
1 TTCAACCTAGCTAGGAAGCCTCTCAATTGTCATTGTTTT
60647879 TTCAACCTAGCTAGGAAGCCTCTCAATTGTCATTGTTTT
1 TTCAACCTAGCTAGGAAGCCTCTCAATTGTCATTGTTTT
60647918 T
1 T
60647919 CTTTTAGCAA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.23, C:0.23, G:0.15, T:0.39
Consensus pattern (39 bp):
TTCAACCTAGCTAGGAAGCCTCTCAATTGTCATTGTTTT
Found at i:60651975 original size:10 final size:10
Alignment explanation
Indices: 60651960--60651998 Score: 69
Period size: 10 Copynumber: 3.8 Consensus size: 10
60651950 TGCTTTTGTA
60651960 CATGATATGC
1 CATGATATGC
60651970 CATGATATGC
1 CATGATATGC
60651980 ACATGATATGC
1 -CATGATATGC
60651991 CATGATAT
1 CATGATAT
60651999 ATTCACATAT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
10 18 0.64
11 10 0.36
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.31
Consensus pattern (10 bp):
CATGATATGC
Found at i:60651984 original size:21 final size:21
Alignment explanation
Indices: 60651959--60651998 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
60651949 CTGCTTTTGT
60651959 ACATGATATGCCATGATATGC
1 ACATGATATGCCATGATATGC
60651980 ACATGATATGCCATGATAT
1 ACATGATATGCCATGATAT
60651999 ATTCACATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.35, C:0.17, G:0.17, T:0.30
Consensus pattern (21 bp):
ACATGATATGCCATGATATGC
Found at i:60656590 original size:23 final size:22
Alignment explanation
Indices: 60656537--60656593 Score: 71
Period size: 22 Copynumber: 2.5 Consensus size: 22
60656527 TGAGCTAAAC
60656537 CGGTAAGCTCTATCAAGTTGAA
1 CGGTAAGCTCTATCAAGTTGAA
* *
60656559 CAGTAAGCTCATAT-GAGTTGATA
1 CGGTAAGCTC-TATCAAGTTGA-A
60656582 CGGTAAGCTCTA
1 CGGTAAGCTCTA
60656594 ATGAGCTGAA
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
22 17 0.57
23 13 0.43
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.28
Consensus pattern (22 bp):
CGGTAAGCTCTATCAAGTTGAA
Found at i:60656597 original size:23 final size:22
Alignment explanation
Indices: 60656517--60656603 Score: 70
Period size: 23 Copynumber: 3.9 Consensus size: 22
60656507 TAATGAACAA
* * *
60656517 TAAGCTCTTATGAGCTAAACCGG
1 TAAGCTCTAATGAGTTGAA-CGG
* *
60656540 TAAGCTCT-ATCAAGTTGAACAG
1 TAAGCTCTAAT-GAGTTGAACGG
60656562 TAAGCTC-ATATGAGTTGATACGG
1 TAAGCTCTA-ATGAGTTGA-ACGG
*
60656585 TAAGCTCTAATGAGCTGAA
1 TAAGCTCTAATGAGTTGAA
60656604 AACAGTAAAC
Statistics
Matches: 52, Mismatches: 7, Indels: 11
0.74 0.10 0.16
Matches are distributed among these distances:
22 18 0.35
23 33 0.63
24 1 0.02
ACGTcount: A:0.33, C:0.17, G:0.22, T:0.28
Consensus pattern (22 bp):
TAAGCTCTAATGAGTTGAACGG
Found at i:60662602 original size:16 final size:17
Alignment explanation
Indices: 60662581--60662613 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
60662571 TTCATATTCA
60662581 TGCAAAAAATT-ACATT
1 TGCAAAAAATTCACATT
*
60662597 TGCAAACAATTCACATT
1 TGCAAAAAATTCACATT
60662614 CACCATGCAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.45, C:0.18, G:0.06, T:0.30
Consensus pattern (17 bp):
TGCAAAAAATTCACATT
Found at i:60663721 original size:43 final size:43
Alignment explanation
Indices: 60663663--60663806 Score: 166
Period size: 43 Copynumber: 3.4 Consensus size: 43
60663653 GTACCAATCC
** * *
60663663 ATATCCCTTATATGGTCTTACATGTAA-TTTCGTATCGATGCCA
1 ATATCCCAGATATGGTCTTACATG-AAGTCTCATATCGATGCCA
* * *
60663706 ATATCCCAGCTATGGTCTTACATAAAGTCTCATATCTATGCCA
1 ATATCCCAGATATGGTCTTACATGAAGTCTCATATCGATGCCA
* * * *
60663749 ATAGCCTAGTTATGGTCGTACATGAAGTCTCATATCGATGCC-
1 ATATCCCAGATATGGTCTTACATGAAGTCTCATATCGATGCCA
60663791 ATATCCCAGATATGGT
1 ATATCCCAGATATGGT
60663807 TTTAGACGTA
Statistics
Matches: 84, Mismatches: 16, Indels: 3
0.82 0.16 0.03
Matches are distributed among these distances:
42 15 0.18
43 69 0.82
ACGTcount: A:0.28, C:0.22, G:0.16, T:0.34
Consensus pattern (43 bp):
ATATCCCAGATATGGTCTTACATGAAGTCTCATATCGATGCCA
Found at i:60665488 original size:6 final size:6
Alignment explanation
Indices: 60665467--60665554 Score: 65
Period size: 6 Copynumber: 14.3 Consensus size: 6
60665457 AAGAAACAAT
* * *
60665467 ATCAGA A-CTAGA ATCAGG ATCAGA ATCAGA ATCA-A GTGACAGA ATCAAA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA
* *
60665516 ATCAGA ATCAGT ATCAGGTA AT-AGA ATCAAA ATCAGA AT
1 ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA AT
60665555 GTGAATGCAA
Statistics
Matches: 64, Mismatches: 10, Indels: 16
0.71 0.11 0.18
Matches are distributed among these distances:
5 6 0.09
6 49 0.77
7 5 0.08
8 4 0.06
ACGTcount: A:0.49, C:0.15, G:0.17, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:60665520 original size:31 final size:31
Alignment explanation
Indices: 60665476--60665554 Score: 104
Period size: 31 Copynumber: 2.5 Consensus size: 31
60665466 TATCAGAACT
** *
60665476 AGAATCAGGATCAGAATCAGAATCAAGTGAC
1 AGAATCAAAATCAGAATCAGAATCAAGTAAC
* * *
60665507 AGAATCAAAATCAGAATCAGTATCAGGTAAT
1 AGAATCAAAATCAGAATCAGAATCAAGTAAC
60665538 AGAATCAAAATCAGAAT
1 AGAATCAAAATCAGAAT
60665555 GTGAATGCAA
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 42 1.00
ACGTcount: A:0.49, C:0.14, G:0.18, T:0.19
Consensus pattern (31 bp):
AGAATCAAAATCAGAATCAGAATCAAGTAAC
Found at i:60665721 original size:27 final size:26
Alignment explanation
Indices: 60665673--60665732 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
60665663 GCGAGGCTGC
*
60665673 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
60665700 CAGATATTGTGCCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
*
60665726 TAGATAT
1 CAGATAT
60665733 ATATATGTGG
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.35, C:0.20, G:0.22, T:0.23
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:60666089 original size:27 final size:27
Alignment explanation
Indices: 60666059--60666523 Score: 561
Period size: 27 Copynumber: 17.2 Consensus size: 27
60666049 AACACCCTAG
** * *
60666059 GGGTAAAATGGTAATTTTATAAATTGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
* * *
60666086 GGGTAAAACGGTAATTCTGTAAACCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
60666113 GGGTAAAACAGTAATTTTGTAAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
60666140 GGGTAAAACAGTAATTTTGTAAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
* * * * *
60666167 AGGTAAAATAGTAATTCTGTTAATCAA
1 GGGTAAAACAGTAATTTTGTAAATCGA
** *
60666194 GGGTAAAATGGTAATTCTGTAAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
60666221 GGGTAAAACAGTAATTTTTGTAAATCGA
1 GGGTAAAACAGTAA-TTTTGTAAATCGA
* * *
60666249 GGGTAAAATAGTAATTCTATAAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
* * *
60666276 GGGTAAAATAGTAATTCTGTAAATTGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
* * *
60666303 GGGTAAAATAGTAATTTTATAAATCAA
1 GGGTAAAACAGTAATTTTGTAAATCGA
**
60666330 GGGTAAAATGGTAATTTTGTAAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
* *
60666357 GGGTAAAACGGTAATTTTGTAAATTGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
* * *
60666384 GGGTAGAACAGTAATTCTATAAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
* * *
60666411 GGGTAAAACAGTAATTCTATCAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
* * * *
60666438 GGGTAAAACGGTAATTCTGTCAATTGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
60666465 GGGTAAAACAGTAATTTTGTAAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
* *
60666492 GGGTAAAATAGTAATTTTGTAATTCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
60666519 GGGTA
1 GGGTA
60666524 CTTTGATAAT
Statistics
Matches: 387, Mismatches: 50, Indels: 2
0.88 0.11 0.00
Matches are distributed among these distances:
27 362 0.94
28 25 0.06
ACGTcount: A:0.40, C:0.07, G:0.22, T:0.31
Consensus pattern (27 bp):
GGGTAAAACAGTAATTTTGTAAATCGA
Found at i:60666197 original size:81 final size:81
Alignment explanation
Indices: 60666059--60666523 Score: 624
Period size: 81 Copynumber: 5.7 Consensus size: 81
60666049 AACACCCTAG
** * ** * *
60666059 GGGTAAAATGGTAATTTTATAAATTGAGGGTAAAACGGTAATTCTGTAAACCGAGGGTAAAACAG
1 GGGTAAAACAGTAATTTTATAAATCGAGGGTAAAATAGTAATTCTGTAAATCGAGGGTAAAACGG
* *
60666124 TAATTTTGTAAATCGA
66 TAATTCTGTAAATTGA
* * * * *
60666140 GGGTAAAACAGTAATTTTGTAAATCGAAGGTAAAATAGTAATTCTGTTAATCAAGGGTAAAATGG
1 GGGTAAAACAGTAATTTTATAAATCGAGGGTAAAATAGTAATTCTGTAAATCGAGGGTAAAACGG
*
60666205 TAATTCTGTAAATCGA
66 TAATTCTGTAAATTGA
* * **
60666221 GGGTAAAACAGTAATTTTTGTAAATCGAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAATA
1 GGGTAAAACAGTAA-TTTTATAAATCGAGGGTAAAATAGTAATTCTGTAAATCGAGGGTAAAACG
60666286 GTAATTCTGTAAATTGA
65 GTAATTCTGTAAATTGA
* * * *
60666303 GGGTAAAATAGTAATTTTATAAATCAAGGGTAAAATGGTAATTTTGTAAATCGAGGGTAAAACGG
1 GGGTAAAACAGTAATTTTATAAATCGAGGGTAAAATAGTAATTCTGTAAATCGAGGGTAAAACGG
*
60666368 TAATTTTGTAAATTGA
66 TAATTCTGTAAATTGA
* * * * *
60666384 GGGTAGAACAGTAATTCTATAAATCGAGGGTAAAACAGTAATTCTATCAATCGAGGGTAAAACGG
1 GGGTAAAACAGTAATTTTATAAATCGAGGGTAAAATAGTAATTCTGTAAATCGAGGGTAAAACGG
*
60666449 TAATTCTGTCAATTGA
66 TAATTCTGTAAATTGA
* * *
60666465 GGGTAAAACAGTAATTTTGTAAATCGAGGGTAAAATAGTAATTTTGTAATTCGAGGGTA
1 GGGTAAAACAGTAATTTTATAAATCGAGGGTAAAATAGTAATTCTGTAAATCGAGGGTA
60666524 CTTTGATAAT
Statistics
Matches: 336, Mismatches: 47, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
81 262 0.78
82 74 0.22
ACGTcount: A:0.40, C:0.07, G:0.22, T:0.31
Consensus pattern (81 bp):
GGGTAAAACAGTAATTTTATAAATCGAGGGTAAAATAGTAATTCTGTAAATCGAGGGTAAAACGG
TAATTCTGTAAATTGA
Found at i:60666533 original size:27 final size:26
Alignment explanation
Indices: 60666122--60666675 Score: 184
Period size: 27 Copynumber: 20.5 Consensus size: 26
60666112 AGGGTAAAAC
***
60666122 AGTAATTTTGTAAATCGAGGGTAAAAC
1 AGTAATTTTGTAAATCGAGGGT-ATTT
* **
60666149 AGTAATTTTGTAAATCGAAGGTAAAAT
1 AGTAATTTTGTAAATCGAGGGT-ATTT
* * * **
60666176 AGTAATTCTGTTAATCAAGGGTAAAAT
1 AGTAATTTTGTAAATCGAGGGT-ATTT
* * ***
60666203 GGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTTTGTAAATCGAGGGT-ATTT
**
60666230 AGTAATTTTTGTAAATCGAGGGTAAAAT
1 AGTAA-TTTTGTAAATCGAGGGT-ATTT
* * **
60666258 AGTAATTCTATAAATCGAGGGTAAAAT
1 AGTAATTTTGTAAATCGAGGGT-ATTT
* * **
60666285 AGTAATTCTGTAAATTGAGGGTAAAAT
1 AGTAATTTTGTAAATCGAGGGT-ATTT
* * **
60666312 AGTAATTTTATAAATCAAGGGTAAAAT
1 AGTAATTTTGTAAATCGAGGGT-ATTT
* **
60666339 GGTAATTTTGTAAATCGAGGGTA-AA
1 AGTAATTTTGTAAATCGAGGGTATTT
* ***
60666364 ACGGTAATTTTGTAAATTGAGGGTAGAAC
1 A--GTAATTTTGTAAATCGAGGGTA-TTT
* * ***
60666393 AGTAATTCTATAAATCGAGGGTAAAAC
1 AGTAATTTTGTAAATCGAGGGT-ATTT
* * * **
60666420 AGTAATTCTATCAATCGAGGGTA-AA
1 AGTAATTTTGTAAATCGAGGGTATTT
* * * ***
60666445 ACGGTAATTCTGTCAATTGAGGGTAAAAC
1 A--GTAATTTTGTAAATCGAGGGT-ATTT
**
60666474 AGTAATTTTGTAAATCGAGGGTAAAAT
1 AGTAATTTTGTAAATCGAGGGT-ATTT
*
60666501 AGTAATTTTGTAATTCGAGGGTACTTT
1 AGTAATTTTGTAAATCGAGGGTA-TTT
** *
60666528 -GATAATTTTACAAGTCGAGGGTATTTT
1 AG-TAATTTTGTAAATCGAGGGTA-TTT
*
60666555 AGTAATTTTGCAAA-CTGAGGGTATTT
1 AGTAATTTTGTAAATC-GAGGGTATTT
* ** *
60666581 CGGTAATTTTACAAATCGAGGATATTT
1 -AGTAATTTTGTAAATCGAGGGTATTT
* * * *
60666608 GGGTAATTTTATAAACCGGGGGTACTTT
1 -AGTAATTTTGTAAATCGAGGGTA-TTT
* * *
60666636 GGTAA-TTT-TATATCTGGGGGTATTT
1 AGTAATTTTGTAAATC-GAGGGTATTT
*
60666661 CAGTAATTTGGTAAA
1 -AGTAATTTTGTAAA
60666676 CTAAAGTATT
Statistics
Matches: 444, Mismatches: 62, Indels: 41
0.81 0.11 0.07
Matches are distributed among these distances:
25 10 0.02
26 22 0.05
27 373 0.84
28 35 0.08
29 4 0.01
ACGTcount: A:0.37, C:0.07, G:0.22, T:0.34
Consensus pattern (26 bp):
AGTAATTTTGTAAATCGAGGGTATTT
Found at i:60666546 original size:54 final size:54
Alignment explanation
Indices: 60666059--60666601 Score: 463
Period size: 54 Copynumber: 10.0 Consensus size: 54
60666049 AACACCCTAG
* * * * * * *
60666059 GGGTAAAATGGTAATTTTATAAATTGAGGGTAAAACG-GTAATTCTGTAAACCGA
1 GGGTAAAATAGTAATTTTGTAAATCGAGGGT-AAATGAGTAATTTTATAAATCGA
* ** *
60666113 GGGTAAAACAGTAATTTTGTAAATCGAGGGTAAAACAGTAATTTTGTAAATCGA
1 GGGTAAAATAGTAATTTTGTAAATCGAGGGTAAATGAGTAATTTTATAAATCGA
* * * * * *
60666167 AGGTAAAATAGTAATTCTGTTAATCAAGGGTAAAATG-GTAATTCTGTAAATCGA
1 GGGTAAAATAGTAATTTTGTAAATCGAGGGT-AAATGAGTAATTTTATAAATCGA
* *
60666221 GGGTAAAACAGTAATTTTTGTAAATCGAGGGTAAAAT-AGTAATTCTATAAATCGA
1 GGGTAAAATAGTAA-TTTTGTAAATCGAGGGT-AAATGAGTAATTTTATAAATCGA
* * *
60666276 GGGTAAAATAGTAATTCTGTAAATTGAGGGTAAAAT-AGTAATTTTATAAATCAA
1 GGGTAAAATAGTAATTTTGTAAATCGAGGGT-AAATGAGTAATTTTATAAATCGA
* * * *
60666330 GGGTAAAATGGTAATTTTGTAAATCGAGGGTAAAACG-GTAATTTTGTAAATTGA
1 GGGTAAAATAGTAATTTTGTAAATCGAGGGT-AAATGAGTAATTTTATAAATCGA
* * * * ** * *
60666384 GGGTAGAACAGTAATTCTATAAATCGAGGGTAAAACAGTAATTCTATCAATCGA
1 GGGTAAAATAGTAATTTTGTAAATCGAGGGTAAATGAGTAATTTTATAAATCGA
** * * * ** *
60666438 GGGTAAAACGGTAATTCTGTCAATTGAGGGTAAAACAGTAATTTTGTAAATCGA
1 GGGTAAAATAGTAATTTTGTAAATCGAGGGTAAATGAGTAATTTTATAAATCGA
* ** * *
60666492 GGGTAAAATAGTAATTTTGTAATTCGAGGGTACTTTGA-TAATTTTACAAGTCGA
1 GGGTAAAATAGTAATTTTGTAAATCGAGGGTA-AATGAGTAATTTTATAAATCGA
*** * ** *
60666546 GGGTATTTTAGTAATTTTGCAAA-CTGAGGGTATTTCG-GTAATTTTACAAATCGA
1 GGGTAAAATAGTAATTTTGTAAATC-GAGGGTAAAT-GAGTAATTTTATAAATCGA
60666600 GG
1 GG
60666602 ATATTTGGGT
Statistics
Matches: 407, Mismatches: 72, Indels: 20
0.82 0.14 0.04
Matches are distributed among these distances:
53 10 0.02
54 345 0.85
55 52 0.13
ACGTcount: A:0.38, C:0.08, G:0.22, T:0.32
Consensus pattern (54 bp):
GGGTAAAATAGTAATTTTGTAAATCGAGGGTAAATGAGTAATTTTATAAATCGA
Found at i:60667478 original size:71 final size:71
Alignment explanation
Indices: 60667394--60667536 Score: 277
Period size: 71 Copynumber: 2.0 Consensus size: 71
60667384 TGAACCCAGG
60667394 ACTTCTCCAACACTTCTCAGCACACTTAACCACTAAAACAAGCCTTCATTAACGAAATTTACATG
1 ACTTCTCCAACACTTCTCAGCACACTTAACCACTAAAACAAGCCTTCATTAACGAAATTTACATG
60667459 CACAAC
66 CACAAC
*
60667465 ACTTCTCCAACACTTGTCAGCACACTTAACCACTAAAACAAGCCTTCATTAACGAAATTTACATG
1 ACTTCTCCAACACTTCTCAGCACACTTAACCACTAAAACAAGCCTTCATTAACGAAATTTACATG
60667530 CACAAC
66 CACAAC
60667536 A
1 A
60667537 AAATATTATA
Statistics
Matches: 71, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
71 71 1.00
ACGTcount: A:0.38, C:0.31, G:0.06, T:0.24
Consensus pattern (71 bp):
ACTTCTCCAACACTTCTCAGCACACTTAACCACTAAAACAAGCCTTCATTAACGAAATTTACATG
CACAAC
Found at i:60669634 original size:49 final size:50
Alignment explanation
Indices: 60669500--60669644 Score: 152
Period size: 49 Copynumber: 2.9 Consensus size: 50
60669490 ATTAGGGTTT
* * *
60669500 AAGGATACCATGTAAGACCAT-ACCAAGGCATGGCATTGGTGAGTTCATAAGG
1 AAGGATACCATGTAAGACCATGA-CAAGACATGGCAATGGTAAGTTCA-AA-G
**
60669552 CAAGGATACCATGTAAGACCATGTTAAGACATGGCAATGGTAAGTTTC-AA-
1 -AAGGATACCATGTAAGACCATGACAAGACATGGCAATGGTAAG-TTCAAAG
* * *
60669602 AAGGATACCACGTAAGACCATGACAAGTCATGGCGATGGTAAG
1 AAGGATACCATGTAAGACCATGACAAGACATGGCAATGGTAAG
60669645 GTACCCATGT
Statistics
Matches: 80, Mismatches: 10, Indels: 8
0.82 0.10 0.08
Matches are distributed among these distances:
49 38 0.47
52 2 0.03
53 37 0.46
54 3 0.04
ACGTcount: A:0.37, C:0.17, G:0.26, T:0.21
Consensus pattern (50 bp):
AAGGATACCATGTAAGACCATGACAAGACATGGCAATGGTAAGTTCAAAG
Found at i:60675009 original size:47 final size:47
Alignment explanation
Indices: 60674955--60675234 Score: 434
Period size: 47 Copynumber: 6.0 Consensus size: 47
60674945 TTAGGATTTT
** *
60674955 ATGTGATGAATGTGAATGTGTATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
60675002 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
60675049 ATGTGGTGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCT
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
60675096 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
60675143 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * *
60675190 ATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATGGC
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGC
60675235 TAGTGTGAAA
Statistics
Matches: 212, Mismatches: 21, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 212 1.00
ACGTcount: A:0.32, C:0.12, G:0.30, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:60675057 original size:25 final size:25
Alignment explanation
Indices: 60674982--60675057 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 25
60674972 GTGTATATAT
60674982 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
* * * *
60675007 ATGA-ATGTG-AGCAT-G-CATATGT-
1 GTGATAAG-GCCGAATGGCCA-ATGTG
60675029 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
60675054 GTGA
1 GTGA
60675058 ATATGAACAT
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 6 0.17
23 10 0.28
24 10 0.28
25 10 0.28
ACGTcount: A:0.29, C:0.13, G:0.34, T:0.24
Consensus pattern (25 bp):
GTGATAAGGCCGAATGGCCAATGTG
Found at i:60675177 original size:141 final size:140
Alignment explanation
Indices: 60674954--60675242 Score: 515
Period size: 141 Copynumber: 2.0 Consensus size: 140
60674944 TTTAGGATTT
** *
60674954 TATGTGATGAATGTGAATGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGC
1 TATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGC
*
60675019 ATGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACATGCATATATGTGATAAG
66 ATGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACATGCATATATGTGATAAA
60675084 GCCGAATGGCC
131 GCCGAATGG-C
60675095 TATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGC
1 TATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGC
*
60675160 ATGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACATGCATATATGTGGTAAA
66 ATGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACATGCATATATGTGATAAA
60675225 GCCGAATGGC
131 GCCGAATGGC
60675235 TAGTGTGA
1 TA-TGTGA
60675243 AATATGTAGG
Statistics
Matches: 142, Mismatches: 5, Indels: 2
0.95 0.03 0.01
Matches are distributed among these distances:
140 3 0.02
141 139 0.98
ACGTcount: A:0.31, C:0.11, G:0.30, T:0.27
Consensus pattern (140 bp):
TATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGC
ATGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACATGCATATATGTGATAAA
GCCGAATGGC
Found at i:60675198 original size:25 final size:25
Alignment explanation
Indices: 60675123--60675198 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 25
60675113 ATGCATATAT
60675123 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
* * * *
60675148 ATGA-ATGTG-AGCAT-G-CATATGT-
1 GTGATAAG-GCCGAATGGCCA-ATGTG
60675170 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
60675195 GTGA
1 GTGA
60675199 ATATGAACAT
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 6 0.17
23 10 0.28
24 10 0.28
25 10 0.28
ACGTcount: A:0.29, C:0.13, G:0.34, T:0.24
Consensus pattern (25 bp):
GTGATAAGGCCGAATGGCCAATGTG
Found at i:60675542 original size:37 final size:37
Alignment explanation
Indices: 60675397--60675541 Score: 245
Period size: 37 Copynumber: 3.9 Consensus size: 37
60675387 GGAAATATAT
*
60675397 TCCGGGTGAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
60675434 TCCGGGTAAGACCCGATGACTACGTGTGGAGAGTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
60675471 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
60675508 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
60675542 TCGTCTGAGC
Statistics
Matches: 102, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 102 1.00
ACGTcount: A:0.23, C:0.19, G:0.33, T:0.25
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:60678273 original size:18 final size:18
Alignment explanation
Indices: 60678250--60678286 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
60678240 TCTCACGAAA
60678250 ACTTTAGCATCTCATAAT
1 ACTTTAGCATCTCATAAT
60678268 ACTTTAGCATCTCATAAT
1 ACTTTAGCATCTCATAAT
60678286 A
1 A
60678287 TACTGTTCAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.35, C:0.22, G:0.05, T:0.38
Consensus pattern (18 bp):
ACTTTAGCATCTCATAAT
Found at i:60679259 original size:79 final size:80
Alignment explanation
Indices: 60679148--60679329 Score: 210
Period size: 79 Copynumber: 2.3 Consensus size: 80
60679138 GCTACTCGTT
* *
60679148 CAAATGCCTTCGGGTCATAGCCCGGTTATAGTAACTCACACAAATGCCTTCGGGA-CTTAACCCG
1 CAAATGCCTTCGGG-CTTAGCCCGGATATAGTAACTCACACAAATGCCTTC-GGATCTTAACCCG
* *
60679212 GATTTAGTAAC-TCGCA
64 GATATAGTAACTTAGCA
* * **
60679228 CAAATGCCTTCGGGCTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGCTTAGCCCGGATA-TAGTAACTCACACAAATGCCTTCGGATCTTAACCCGG
* *
60679292 ATATGGTCACTTAGCA
65 ATATAGTAACTTAGCA
*
60679308 CAAA-GCCTTCGGACTTAGCCCG
1 CAAATGCCTTCGGGCTTAGCCCG
60679330 ACATCATTCG
Statistics
Matches: 88, Mismatches: 11, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
78 4 0.05
79 62 0.70
80 22 0.25
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.25
Consensus pattern (80 bp):
CAAATGCCTTCGGGCTTAGCCCGGATATAGTAACTCACACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCA
Found at i:60679265 original size:39 final size:40
Alignment explanation
Indices: 60679148--60679329 Score: 203
Period size: 40 Copynumber: 4.6 Consensus size: 40
60679138 GCTACTCGTT
* * *
60679148 CAAATGCCTTCGGGTCATAGCCCGG-TTATAGTAACTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
60679188 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
60679228 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
60679267 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
60679308 CAAA-GCCTTC-GGACTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCG
60679330 ACATCATTCG
Statistics
Matches: 123, Mismatches: 15, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
38 2 0.02
39 41 0.33
40 70 0.57
41 10 0.08
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:60680520 original size:55 final size:56
Alignment explanation
Indices: 60680456--60680574 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
60680446 TATTAGTTTA
60680456 TTGCCCATGCTTCTTATTTTA-TTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
60680511 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
60680567 TTGCCCAT
1 TTGCCCAT
60680575 CATCCCTTGT
Statistics
Matches: 63, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
55 21 0.33
56 42 0.67
ACGTcount: A:0.23, C:0.23, G:0.09, T:0.45
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:60684182 original size:20 final size:21
Alignment explanation
Indices: 60684154--60684205 Score: 63
Period size: 20 Copynumber: 2.6 Consensus size: 21
60684144 ATTCATTTCT
60684154 ATTCGTATAAACT-GTAATTC
1 ATTCGTATAAACTAGTAATTC
* *
60684174 ATTCATAT-AACTAGTAGTTC
1 ATTCGTATAAACTAGTAATTC
*
60684194 ATCCGTATAAAC
1 ATTCGTATAAAC
60684206 AATAGTTCAT
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
19 4 0.15
20 19 0.73
21 3 0.12
ACGTcount: A:0.37, C:0.17, G:0.10, T:0.37
Consensus pattern (21 bp):
ATTCGTATAAACTAGTAATTC
Found at i:60684201 original size:40 final size:39
Alignment explanation
Indices: 60684157--60684262 Score: 97
Period size: 40 Copynumber: 2.7 Consensus size: 39
60684147 CATTTCTATT
* *
60684157 CGTATAAACTGTAATTCATTCATATAACTAGTAGTTCATC
1 CGTATAAACTGTAATTCATTCATATAAC-AGTAATTCAAC
** *
60684197 CGTATAAACAATAGTTCA-TCAGTAATAACAGTAATTCAAC
1 CGTATAAACTGTAATTCATTCA-T-ATAACAGTAATTCAAC
* * * *
60684237 TGTATTAACTGTTATTCATCCATATA
1 CGTATAAACTGTAATTCATTCATATA
60684263 TACACATATC
Statistics
Matches: 51, Mismatches: 12, Indels: 7
0.73 0.17 0.10
Matches are distributed among these distances:
39 6 0.12
40 38 0.75
41 7 0.14
ACGTcount: A:0.38, C:0.17, G:0.09, T:0.36
Consensus pattern (39 bp):
CGTATAAACTGTAATTCATTCATATAACAGTAATTCAAC
Found at i:60684234 original size:20 final size:19
Alignment explanation
Indices: 60684167--60684234 Score: 57
Period size: 20 Copynumber: 3.4 Consensus size: 19
60684157 CGTATAAACT
60684167 GTAATTCATTCA-TATAACTA
1 GTAATTCA-TCAGTATAAC-A
* *
60684187 GTAGTTCATCCGTATAAACA
1 GTAATTCATCAGTAT-AACA
* *
60684207 ATAGTTCATCAGTAATAACA
1 GTAATTCATCAGT-ATAACA
60684227 GTAATTCA
1 GTAATTCA
60684235 ACTGTATTAA
Statistics
Matches: 39, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
19 2 0.05
20 32 0.82
21 5 0.13
ACGTcount: A:0.40, C:0.16, G:0.10, T:0.34
Consensus pattern (19 bp):
GTAATTCATCAGTATAACA
Found at i:60684441 original size:26 final size:24
Alignment explanation
Indices: 60684412--60684468 Score: 71
Period size: 25 Copynumber: 2.3 Consensus size: 24
60684402 GCCATGATCG
60684412 GTAAGCTCCTCTTGAGCTAATGAATA
1 GTAAGCTCCTCTTGAGCTAA--AATA
* *
60684438 GTAAGCT-CTTTTGAGCTAAAGTA
1 GTAAGCTCCTCTTGAGCTAAAATA
60684461 GTAAGCTC
1 GTAAGCTC
60684469 TATCAAGCTG
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
23 10 0.36
25 11 0.39
26 7 0.25
ACGTcount: A:0.30, C:0.18, G:0.21, T:0.32
Consensus pattern (24 bp):
GTAAGCTCCTCTTGAGCTAAAATA
Found at i:60684462 original size:23 final size:24
Alignment explanation
Indices: 60684412--60684469 Score: 73
Period size: 23 Copynumber: 2.4 Consensus size: 24
60684402 GCCATGATCG
60684412 GTAAGCTCCTCTTGAGCTAATGAATA
1 GTAAGCT-CTCTTGAGCTAA-GAATA
* *
60684438 GTAAGCTCTTTTGAGCTAA-AGTA
1 GTAAGCTCTCTTGAGCTAAGAATA
60684461 GTAAGCTCT
1 GTAAGCTCT
60684470 ATCAAGCTGA
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
23 12 0.40
25 11 0.37
26 7 0.23
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.33
Consensus pattern (24 bp):
GTAAGCTCTCTTGAGCTAAGAATA
Found at i:60684477 original size:23 final size:22
Alignment explanation
Indices: 60684434--60684490 Score: 60
Period size: 23 Copynumber: 2.5 Consensus size: 22
60684424 TGAGCTAATG
* **
60684434 AATAGTAAGCTCTTTTGAGCTA
1 AATAGTAAGCTCTATCAAGCTA
*
60684456 AAGTAGTAAGCTCTATCAAGCTG
1 AA-TAGTAAGCTCTATCAAGCTA
*
60684479 AACAGTAAGCTC
1 AATAGTAAGCTC
60684491 AGACAAGCTA
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
22 11 0.38
23 18 0.62
ACGTcount: A:0.35, C:0.18, G:0.19, T:0.28
Consensus pattern (22 bp):
AATAGTAAGCTCTATCAAGCTA
Found at i:60687202 original size:46 final size:46
Alignment explanation
Indices: 60687098--60687224 Score: 166
Period size: 46 Copynumber: 2.7 Consensus size: 46
60687088 TGAGGCATCT
* * *
60687098 GAACTCGTTGAGTTGCATTTCGAGTTCACCTATGGATGCAAGCATCC
1 GAACTCGTTGAGTTGCATTCCGAGTTCA-TTATGGATGCAAGCACCC
* **
60687145 GAACTCATTGAGTTGTGTTCCGAGTTCATTATGGATGCGAA-CACCC
1 GAACTCGTTGAGTTGCATTCCGAGTTCATTATGGATGC-AAGCACCC
*
60687191 GAGCTCGTTGAGTTGCATTCCGAGTTCATTATGG
1 GAACTCGTTGAGTTGCATTCCGAGTTCATTATGG
60687225 GTGAGATTAT
Statistics
Matches: 69, Mismatches: 10, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
46 43 0.62
47 26 0.38
ACGTcount: A:0.22, C:0.21, G:0.25, T:0.31
Consensus pattern (46 bp):
GAACTCGTTGAGTTGCATTCCGAGTTCATTATGGATGCAAGCACCC
Found at i:60692739 original size:20 final size:20
Alignment explanation
Indices: 60692716--60692761 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
60692706 TAAACTGTAA
* *
60692716 TTCATTCATATAACCAATAG
1 TTCATCCATATAAACAATAG
*
60692736 TTCATCCGTATAAACAATAG
1 TTCATCCATATAAACAATAG
60692756 TTCATC
1 TTCATC
60692762 AGTAATAACA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.37, C:0.22, G:0.07, T:0.35
Consensus pattern (20 bp):
TTCATCCATATAAACAATAG
Found at i:60692771 original size:20 final size:19
Alignment explanation
Indices: 60692724--60692771 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 19
60692714 AATTCATTCA
*
60692724 TATAACCAATAGTTCATCCG
1 TATAA-CAATAGTTCATCAG
60692744 TATAAACAATAGTTCATCAG
1 TAT-AACAATAGTTCATCAG
60692764 TAATAACA
1 T-ATAACA
60692772 GTAATTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
20 21 0.84
21 4 0.16
ACGTcount: A:0.44, C:0.19, G:0.08, T:0.29
Consensus pattern (19 bp):
TATAACAATAGTTCATCAG
Found at i:60693035 original size:23 final size:22
Alignment explanation
Indices: 60692977--60693044 Score: 100
Period size: 22 Copynumber: 3.0 Consensus size: 22
60692967 TTTGAGCTGA
60692977 TGAACAGTAAGCTCTATTGAGC
1 TGAACAGTAAGCTCTATTGAGC
60692999 TGAACAGTAAGCTCTATTGAGC
1 TGAACAGTAAGCTCTATTGAGC
* * *
60693021 TGAACCGGTAAGCTCCAATGAGC
1 TGAA-CAGTAAGCTCTATTGAGC
60693044 T
1 T
60693045 AAAAATAGTA
Statistics
Matches: 42, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
22 26 0.62
23 16 0.38
ACGTcount: A:0.31, C:0.21, G:0.24, T:0.25
Consensus pattern (22 bp):
TGAACAGTAAGCTCTATTGAGC
Found at i:60694885 original size:43 final size:42
Alignment explanation
Indices: 60694820--60694932 Score: 120
Period size: 43 Copynumber: 2.6 Consensus size: 42
60694810 AGCTCGTACA
* * ** *
60694820 ATGCCATATCCTAGATATGGTCTTACACGTTATC-ACATATCG
1 ATGCCATGTCCTAGACATGGTCTTACACGAAATCGA-ATAACG
* *
60694862 ATGCCACTGTCCTAGACAGGGTCTTACACGAAATCGATTAACG
1 ATGCCA-TGTCCTAGACATGGTCTTACACGAAATCGAATAACG
*
60694905 ATGCCAATGTCCCAGACATGGTCTTACA
1 ATGCC-ATGTCCTAGACATGGTCTTACA
60694933 TGTAATCAGT
Statistics
Matches: 59, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
42 6 0.10
43 51 0.86
44 2 0.03
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.27
Consensus pattern (42 bp):
ATGCCATGTCCTAGACATGGTCTTACACGAAATCGAATAACG
Found at i:60694957 original size:28 final size:28
Alignment explanation
Indices: 60694913--60694968 Score: 94
Period size: 28 Copynumber: 2.0 Consensus size: 28
60694903 CGATGCCAAT
*
60694913 GTCCCAGACATGGTCTTACATGTAATCA
1 GTCCCAGACATGCTCTTACATGTAATCA
*
60694941 GTCCCATACATGCTCTTACATGTAATCA
1 GTCCCAGACATGCTCTTACATGTAATCA
60694969 CATCTCGGTA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.29, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
GTCCCAGACATGCTCTTACATGTAATCA
Found at i:60698163 original size:27 final size:28
Alignment explanation
Indices: 60698118--60698178 Score: 97
Period size: 27 Copynumber: 2.2 Consensus size: 28
60698108 ATTTACTAGA
*
60698118 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATGACCATT
*
60698146 ATACCCC-ATGTATGCAAAATGACCTTT
1 ATACCCCTATGTATGCAAAATGACCATT
60698173 ATACCC
1 ATACCC
60698179 TTAGGGTTAA
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
27 24 0.77
28 7 0.23
ACGTcount: A:0.34, C:0.28, G:0.08, T:0.30
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCATT
Found at i:60698328 original size:28 final size:27
Alignment explanation
Indices: 60698287--60698368 Score: 103
Period size: 27 Copynumber: 3.0 Consensus size: 27
60698277 AGGAAGCGTC
60698287 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
* **
60698315 CTGGTGGCCCTGCCACGTATATCTGTT
1 CTGGTGGCACTGCCACAAATATCTGTT
60698342 CTGGTGGCACTGCCACAAAATATCTGT
1 CTGGTGGCACTGCCAC-AAATATCTGT
60698369 ATCTAGTGAC
Statistics
Matches: 46, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
27 23 0.50
28 23 0.50
ACGTcount: A:0.20, C:0.26, G:0.23, T:0.32
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:60698395 original size:55 final size:56
Alignment explanation
Indices: 60698287--60698401 Score: 128
Period size: 55 Copynumber: 2.1 Consensus size: 56
60698277 AGGAAGCGTC
* * * *
60698287 CTGGTGGCTATGCCACAAATTATCTGTTCTGGTGGCCCTGCCACGTATATCTGT-T
1 CTGGTGGCTATGCCACAAAATATCTGTTCTAGTGACCCTGCCACATATATCTGTAT
* * *
60698342 CTGGTGGC-ACTGCCACAAAATATCTGTATCTAGTGACTCTGTCACAT-TTTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGT-TCTAGTGACCCTGCCACATATATCTGTAT
60698398 CTGG
1 CTGG
60698402 CAGCCATGCT
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
54 1 0.02
55 30 0.60
56 19 0.38
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35
Consensus pattern (56 bp):
CTGGTGGCTATGCCACAAAATATCTGTTCTAGTGACCCTGCCACATATATCTGTAT
Found at i:60699494 original size:11 final size:10
Alignment explanation
Indices: 60699466--60699499 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
60699456 AGCCTGTAAG
60699466 TATTCTGAAT
1 TATTCTGAAT
*
60699476 TTTTCTGAAT
1 TATTCTGAAT
60699486 ATATTCTGAAT
1 -TATTCTGAAT
60699497 TAT
1 TAT
60699500 CTGTCTGTAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
10 12 0.57
11 9 0.43
ACGTcount: A:0.29, C:0.09, G:0.09, T:0.53
Consensus pattern (10 bp):
TATTCTGAAT
Found at i:60702841 original size:40 final size:40
Alignment explanation
Indices: 60702679--60702860 Score: 226
Period size: 40 Copynumber: 4.6 Consensus size: 40
60702669 TATTCGGATG
* * *
60702679 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
*
60702719 A-ATTCCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATA-ACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
*
60702759 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGTGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
* * *
60702799 ATAACCGGGTTAAGTCCCGAAGGCATTTGAGCGAG-TAGCT
1 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTA-CT
* **
60702839 ATATCC-GGCTAAACCCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGG
60702861 TACTTGGTTT
Statistics
Matches: 125, Mismatches: 14, Indels: 7
0.86 0.10 0.05
Matches are distributed among these distances:
39 16 0.13
40 108 0.86
41 1 0.01
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
Found at i:60710778 original size:40 final size:40
Alignment explanation
Indices: 60710721--60710860 Score: 169
Period size: 40 Copynumber: 3.5 Consensus size: 40
60710711 TTCGGATGAA
*
60710721 AACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-
1 AACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAT
* * *
60710760 ATTCCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTAT
1 A-ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAT
*
60710801 AACCGGGCTAAGTCCCGAAGGCATTTGAGCGAGT-AGCTAT
1 AACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGA-CTAT
* **
60710841 ATCC-GGCTAAACCCCGAAGG
1 AACCGGGCTAAGTCCCGAAGG
60710861 TACTTGGTTT
Statistics
Matches: 88, Mismatches: 10, Indels: 6
0.85 0.10 0.06
Matches are distributed among these distances:
39 16 0.18
40 71 0.81
41 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.28, T:0.21
Consensus pattern (40 bp):
AACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAT
Found at i:60715717 original size:28 final size:28
Alignment explanation
Indices: 60715685--60715749 Score: 112
Period size: 28 Copynumber: 2.3 Consensus size: 28
60715675 ATTTACTAGA
*
60715685 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATGACCATT
*
60715713 ATACCCCTATGTATGCAAAATGACCTTT
1 ATACCCCTATGTATGCAAAATGACCATT
60715741 ATACCCCTA
1 ATACCCCTA
60715750 GGGTTAATTT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.34, C:0.28, G:0.08, T:0.31
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCATT
Found at i:60715913 original size:27 final size:28
Alignment explanation
Indices: 60715855--60715944 Score: 112
Period size: 27 Copynumber: 3.2 Consensus size: 28
60715845 AGGAAGCGTC
*
60715855 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAAATATCTGTT
* **
60715883 CTGGTGGCCCTGCCAC-GTATATCTGTT
1 CTGGTGGCACTGCCACAAAATATCTGTT
60715910 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCACAAAATATCTGT-T
60715939 CTGGTG
1 CTGGTG
60715945 ACTCTGTCAC
Statistics
Matches: 52, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
27 23 0.44
28 22 0.42
29 7 0.13
ACGTcount: A:0.19, C:0.24, G:0.24, T:0.32
Consensus pattern (28 bp):
CTGGTGGCACTGCCACAAAATATCTGTT
Found at i:60715955 original size:29 final size:28
Alignment explanation
Indices: 60715865--60715955 Score: 94
Period size: 27 Copynumber: 3.2 Consensus size: 28
60715855 CTGGTGGCTA
* * *
60715865 TGCCACAAATTATCTGTTCTGGTGGCCC
1 TGCCACAAAATATCTGTTCTGGTGACAC
** *
60715893 TGCCAC-GTATATCTGTTCTGGTGGCAC
1 TGCCACAAAATATCTGTTCTGGTGACAC
*
60715920 TGCCACAAAATATCTGTATCTGGTGACTC
1 TGCCACAAAATATCTGT-TCTGGTGACAC
*
60715949 TGTCACA
1 TGCCACA
60715956 TTTTCTGTAT
Statistics
Matches: 52, Mismatches: 9, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
27 23 0.44
28 14 0.27
29 15 0.29
ACGTcount: A:0.21, C:0.26, G:0.21, T:0.32
Consensus pattern (28 bp):
TGCCACAAAATATCTGTTCTGGTGACAC
Found at i:60715963 original size:55 final size:56
Alignment explanation
Indices: 60715855--60715969 Score: 137
Period size: 55 Copynumber: 2.1 Consensus size: 56
60715845 AGGAAGCGTC
* * *
60715855 CTGGTGGCTATGCCACAAATTATCTGTTCTGGTGGCCCTGCCACGTATATCTGT-T
1 CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
* * *
60715910 CTGGTGGC-ACTGCCACAAAATATCTGTATCTGGTGACTCTGTCACAT-TTTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGT-TCTGGTGACCCTGCCACATATATCTGTAT
60715966 CTGG
1 CTGG
60715970 CAGCCATGCT
Statistics
Matches: 51, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
54 1 0.02
55 30 0.59
56 20 0.39
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.35
Consensus pattern (56 bp):
CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
Found at i:60720432 original size:17 final size:18
Alignment explanation
Indices: 60720405--60720449 Score: 56
Period size: 17 Copynumber: 2.5 Consensus size: 18
60720395 GATTGTAAAT
60720405 TTTTATCAAAAAAAGAATA
1 TTTT-TCAAAAAAAGAATA
**
60720424 -TTTTCAAAATTAGAATA
1 TTTTTCAAAAAAAGAATA
60720441 TTTTTCAAA
1 TTTTTCAAA
60720450 CCTTTGATTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
17 12 0.52
18 11 0.48
ACGTcount: A:0.49, C:0.07, G:0.04, T:0.40
Consensus pattern (18 bp):
TTTTTCAAAAAAAGAATA
Found at i:60725247 original size:29 final size:29
Alignment explanation
Indices: 60725214--60725274 Score: 122
Period size: 29 Copynumber: 2.1 Consensus size: 29
60725204 TTTAAGCATG
60725214 ATTTGGATGTTGATTTACTAGTCGTTTTT
1 ATTTGGATGTTGATTTACTAGTCGTTTTT
60725243 ATTTGGATGTTGATTTACTAGTCGTTTTT
1 ATTTGGATGTTGATTTACTAGTCGTTTTT
60725272 ATT
1 ATT
60725275 AACATTCACT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.18, C:0.07, G:0.20, T:0.56
Consensus pattern (29 bp):
ATTTGGATGTTGATTTACTAGTCGTTTTT
Found at i:60728678 original size:29 final size:29
Alignment explanation
Indices: 60728636--60728735 Score: 146
Period size: 29 Copynumber: 3.4 Consensus size: 29
60728626 GCGAGCGCAT
* * *
60728636 TTGGTGAATACTTGATTTGGGAACTTTAC
1 TTGGTGGATACTTGACTTGCGAACTTTAC
* * *
60728665 TTGGCGGATACTTGACTTGCAAAGTTTAC
1 TTGGTGGATACTTGACTTGCGAACTTTAC
60728694 TTGGTGGATACTTGACTTGCGAACTTTAC
1 TTGGTGGATACTTGACTTGCGAACTTTAC
60728723 TTGGTGGATACTT
1 TTGGTGGATACTT
60728736 TCCCTCCTCC
Statistics
Matches: 62, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 62 1.00
ACGTcount: A:0.22, C:0.14, G:0.25, T:0.39
Consensus pattern (29 bp):
TTGGTGGATACTTGACTTGCGAACTTTAC
Found at i:60728682 original size:16 final size:16
Alignment explanation
Indices: 60728658--60728736 Score: 62
Period size: 16 Copynumber: 5.3 Consensus size: 16
60728648 TGATTTGGGA
60728658 ACTTTACTTGGCGGAT
1 ACTTTACTTGGCGGAT
* *
60728674 ACTTGACTT-GC--AA
1 ACTTTACTTGGCGGAT
* *
60728687 AGTTTACTTGGTGGAT
1 ACTTTACTTGGCGGAT
*
60728703 ACTTGACTT-GC-GA-
1 ACTTTACTTGGCGGAT
*
60728716 ACTTTACTTGGTGGAT
1 ACTTTACTTGGCGGAT
60728732 ACTTT
1 ACTTT
60728737 CCCTCCTCCC
Statistics
Matches: 46, Mismatches: 11, Indels: 12
0.67 0.16 0.17
Matches are distributed among these distances:
13 16 0.35
14 4 0.09
15 5 0.11
16 21 0.46
ACGTcount: A:0.22, C:0.16, G:0.23, T:0.39
Consensus pattern (16 bp):
ACTTTACTTGGCGGAT
Found at i:60738890 original size:27 final size:27
Alignment explanation
Indices: 60738871--60738996 Score: 173
Period size: 27 Copynumber: 4.7 Consensus size: 27
60738861 TCAGAGTTTT
*
60738871 CCACAAAAGGTTTTCTTTCAGAGTTCA
1 CCACAAAAGGTTTTCTTTCAAAGTTCA
* *
60738898 CCGCAAAGGGTTTTCTTTCAAAGTTCA
1 CCACAAAAGGTTTTCTTTCAAAGTTCA
* *
60738925 CCA-TAAAGGCTTTCTTTCAAAGTTCA
1 CCACAAAAGGTTTTCTTTCAAAGTTCA
**
60738951 CCACAAAAGGTTTTCTTTCAAAGTTTG
1 CCACAAAAGGTTTTCTTTCAAAGTTCA
*
60738978 CCACAAAAGCTTTTCTTTC
1 CCACAAAAGGTTTTCTTTC
60738997 CTAATTTGTT
Statistics
Matches: 86, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
26 23 0.27
27 63 0.73
ACGTcount: A:0.29, C:0.23, G:0.13, T:0.35
Consensus pattern (27 bp):
CCACAAAAGGTTTTCTTTCAAAGTTCA
Found at i:60738990 original size:53 final size:53
Alignment explanation
Indices: 60738860--60738996 Score: 166
Period size: 53 Copynumber: 2.5 Consensus size: 53
60738850 AGACAGTCCA
* * * * * *
60738860 TTCAGAGTTTTCCACAAAAGGTTTTCTTTCAGAGTTCACCGCAAAGGGTTTTCT
1 TTCAAAGTTTACCACAAAA-GCTTTCTTTCAAAGTTCACCACAAAAGGTTTTCT
* * *
60738914 TTCAAAGTTCACCATAAAGGCTTTCTTTCAAAGTTCACCACAAAAGGTTTTCT
1 TTCAAAGTTTACCACAAAAGCTTTCTTTCAAAGTTCACCACAAAAGGTTTTCT
*
60738967 TTCAAAGTTTGCCACAAAAGCTTTTCTTTC
1 TTCAAAGTTTACCACAAAAGC-TTTCTTTC
60738997 CTAATTTGTT
Statistics
Matches: 69, Mismatches: 13, Indels: 2
0.82 0.15 0.02
Matches are distributed among these distances:
53 47 0.68
54 22 0.32
ACGTcount: A:0.28, C:0.22, G:0.14, T:0.36
Consensus pattern (53 bp):
TTCAAAGTTTACCACAAAAGCTTTCTTTCAAAGTTCACCACAAAAGGTTTTCT
Found at i:60741957 original size:17 final size:18
Alignment explanation
Indices: 60741935--60741970 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
60741925 CACATTAAAG
60741935 TGTTTT-AGTGAAAACCT
1 TGTTTTCAGTGAAAACCT
*
60741952 TGTTTTCATTGAAAACCT
1 TGTTTTCAGTGAAAACCT
60741970 T
1 T
60741971 TCTTTAAGTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 6 0.35
18 11 0.65
ACGTcount: A:0.28, C:0.14, G:0.14, T:0.44
Consensus pattern (18 bp):
TGTTTTCAGTGAAAACCT
Found at i:60743107 original size:28 final size:28
Alignment explanation
Indices: 60743075--60743131 Score: 71
Period size: 28 Copynumber: 2.0 Consensus size: 28
60743065 GCCCAAATAA
60743075 GTCTACAT-ACATGCATATGGCCCACTAG
1 GTCTA-ATCACATGCATATGGCCCACTAG
* * *
60743103 GTCTAATCTCATTCATATGGCCCATTAG
1 GTCTAATCACATGCATATGGCCCACTAG
60743131 G
1 G
60743132 CCCAAATCAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 2 0.08
28 23 0.92
ACGTcount: A:0.26, C:0.26, G:0.18, T:0.30
Consensus pattern (28 bp):
GTCTAATCACATGCATATGGCCCACTAG
Found at i:60743150 original size:29 final size:29
Alignment explanation
Indices: 60743083--60743207 Score: 117
Period size: 29 Copynumber: 4.3 Consensus size: 29
60743073 AAGTCTACAT
* * * *
60743083 ACATGCATATGGCCCACTAGG-TCTAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
*
60743111 TCATTCATATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
* * * *
60743140 ATATTCGTATGGCCTATTAGGCCCAAATT
1 ACATTCATATGGCCCATTAGGCCCAAATC
** * *
60743169 ACATTCATACAGCCCGTTAGGCCCAAACC
1 ACATTCATATGGCCCATTAGGCCCAAATC
*
60743198 AAATTCATAT
1 ACATTCATAT
60743208 ACATGCTTTC
Statistics
Matches: 76, Mismatches: 20, Indels: 1
0.78 0.21 0.01
Matches are distributed among these distances:
28 18 0.24
29 58 0.76
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.27
Consensus pattern (29 bp):
ACATTCATATGGCCCATTAGGCCCAAATC
Found at i:60750778 original size:16 final size:16
Alignment explanation
Indices: 60750754--60750785 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
60750744 GTTAGGTAGC
*
60750754 TAATTAATTTTTTGAA
1 TAATGAATTTTTTGAA
60750770 TAATGAATTTTTTGAA
1 TAATGAATTTTTTGAA
60750786 ATTAGAAGTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.38, C:0.00, G:0.09, T:0.53
Consensus pattern (16 bp):
TAATGAATTTTTTGAA
Found at i:60751027 original size:3 final size:3
Alignment explanation
Indices: 60750964--60751016 Score: 65
Period size: 3 Copynumber: 18.0 Consensus size: 3
60750954 AAAGTAACTT
* *
60750964 TAA TAA TAA TGA TGA TAA TAA TAA TAA TAA TAA TAA TAA -AGA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA
60751009 TAA -AA TAA
1 TAA TAA TAA
60751017 AAACATAATA
Statistics
Matches: 45, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
2 3 0.07
3 41 0.91
4 1 0.02
ACGTcount: A:0.64, C:0.00, G:0.06, T:0.30
Consensus pattern (3 bp):
TAA
Found at i:60758685 original size:24 final size:23
Alignment explanation
Indices: 60758658--60758735 Score: 102
Period size: 24 Copynumber: 3.3 Consensus size: 23
60758648 AAGGCTGTCA
60758658 GGAGAAGATTTGAGAGCTGATAAG
1 GGAGAAGATTT-AGAGCTGATAAG
*
60758682 GGAGAGGATTTAGAGGCTGATAAG
1 GGAGAAGATTTAGA-GCTGATAAG
* *
60758706 GGAGAGGATTTAGGAGCTGATTAG
1 GGAGAAGATTTA-GAGCTGATAAG
60758730 GGAGAA
1 GGAGAA
60758736 CGGTGTTGGC
Statistics
Matches: 49, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
23 3 0.06
24 44 0.90
25 2 0.04
ACGTcount: A:0.35, C:0.04, G:0.41, T:0.21
Consensus pattern (23 bp):
GGAGAAGATTTAGAGCTGATAAG
Found at i:60760208 original size:27 final size:27
Alignment explanation
Indices: 60760170--60760277 Score: 123
Period size: 27 Copynumber: 4.0 Consensus size: 27
60760160 AAGCGTCCTA
* *
60760170 GTGGCTATGCCACATTTATCTAATT-TG
1 GTGGCTCTGCCACATTTATCT-GTTCTG
60760197 GTGGCTCTGCCACATATT-TCTGTTCTG
1 GTGGCTCTGCCACAT-TTATCTGTTCTG
* *
60760224 GTGGCTCTACCACAATTATCTGTTCTG
1 GTGGCTCTGCCACATTTATCTGTTCTG
* *
60760251 GTGACTCTGTCACA-TTATCTGTTCTG
1 GTGGCTCTGCCACATTTATCTGTTCTG
60760277 G
1 G
60760278 CAGCCATGCT
Statistics
Matches: 71, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
26 17 0.24
27 52 0.73
28 2 0.03
ACGTcount: A:0.17, C:0.23, G:0.20, T:0.40
Consensus pattern (27 bp):
GTGGCTCTGCCACATTTATCTGTTCTG
Found at i:60763399 original size:14 final size:14
Alignment explanation
Indices: 60763380--60763412 Score: 66
Period size: 14 Copynumber: 2.4 Consensus size: 14
60763370 TTTATTGATA
60763380 TTGTTTATAAGATG
1 TTGTTTATAAGATG
60763394 TTGTTTATAAGATG
1 TTGTTTATAAGATG
60763408 TTGTT
1 TTGTT
60763413 AACTTAGTTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.24, C:0.00, G:0.21, T:0.55
Consensus pattern (14 bp):
TTGTTTATAAGATG
Found at i:60769563 original size:23 final size:25
Alignment explanation
Indices: 60769537--60769582 Score: 60
Period size: 24 Copynumber: 1.9 Consensus size: 25
60769527 ATTGGGATTT
60769537 TAAAA-AGGTTTTTAT-TTTCTTTG
1 TAAAATAGGTTTTTATATTTCTTTG
* *
60769560 TAAAATAGTTTTTTTTATTTCTT
1 TAAAATAGGTTTTTATATTTCTT
60769583 GTTCGAACTT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 5 0.26
24 8 0.42
25 6 0.32
ACGTcount: A:0.26, C:0.04, G:0.09, T:0.61
Consensus pattern (25 bp):
TAAAATAGGTTTTTATATTTCTTTG
Found at i:60773402 original size:27 final size:27
Alignment explanation
Indices: 60773362--60773473 Score: 131
Period size: 27 Copynumber: 4.1 Consensus size: 27
60773352 AGGAAGCGTC
*
60773362 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
60773389 CTGGTGGCTCTGCCACATATT-TCT-ATT
1 CTGGTGGCTCTGCCACA-ATTATCTGA-T
*
60773416 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
* * *
60773444 CTGGTGACTCTGTCAC-ATTATCTGTT
1 CTGGTGGCTCTGCCACAATTATCTGAT
60773470 CTGG
1 CTGG
60773474 CAGCCATGCT
Statistics
Matches: 75, Mismatches: 5, Indels: 11
0.82 0.05 0.12
Matches are distributed among these distances:
26 9 0.12
27 47 0.63
28 18 0.24
29 1 0.01
ACGTcount: A:0.16, C:0.24, G:0.22, T:0.38
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:60773472 original size:54 final size:54
Alignment explanation
Indices: 60773362--60773473 Score: 154
Period size: 54 Copynumber: 2.1 Consensus size: 54
60773352 AGGAAGCGTC
* *
60773362 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATTTCTATT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTATT
* * * *
60773416 CTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCTGTT
1 CTGGTGGCTATGCCACAATTATCTG-ATCTGGTGACTCTGCCACATATATCTATT
60773470 CTGG
1 CTGG
60773474 CAGCCATGCT
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
54 33 0.65
55 18 0.35
ACGTcount: A:0.16, C:0.24, G:0.22, T:0.38
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTATT
Found at i:60777829 original size:46 final size:46
Alignment explanation
Indices: 60777775--60777902 Score: 211
Period size: 46 Copynumber: 2.8 Consensus size: 46
60777765 ATTTAGGCAT
* *
60777775 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* *
60777821 TCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
*
60777867 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
60777903 GCGGGTTACA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 75 1.00
ACGTcount: A:0.20, C:0.20, G:0.29, T:0.30
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
Found at i:60780826 original size:15 final size:15
Alignment explanation
Indices: 60780806--60780874 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
60780796 ATATCTTGGG
60780806 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
60780821 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
60780836 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
60780851 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
60780866 TTTCTTTAT
1 TTTCTTTAT
60780875 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:60780875 original size:30 final size:30
Alignment explanation
Indices: 60780797--60780884 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
60780787 CATAGTATCA
* * * *
60780797 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
60780827 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
60780857 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
60780885 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:60782151 original size:15 final size:15
Alignment explanation
Indices: 60782131--60782159 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
60782121 CATAAAGTGC
60782131 TTAAATTGAAATTAT
1 TTAAATTGAAATTAT
60782146 TTAAATTGAAATTA
1 TTAAATTGAAATTA
60782160 GGGACTAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.45
Consensus pattern (15 bp):
TTAAATTGAAATTAT
Found at i:60783337 original size:46 final size:46
Alignment explanation
Indices: 60783284--60783412 Score: 213
Period size: 46 Copynumber: 2.8 Consensus size: 46
60783274 TATTTAGGCA
*
60783284 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
*
60783330 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * *
60783376 CCCGAGCTCGTTGAGTTGAGTCCAAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
60783413 GCGGGTTACA
Statistics
Matches: 77, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 77 1.00
ACGTcount: A:0.21, C:0.21, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:60786504 original size:40 final size:40
Alignment explanation
Indices: 60786449--60786672 Score: 288
Period size: 40 Copynumber: 5.5 Consensus size: 40
60786439 TATTCGGATG
60786449 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
60786489 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-A--AGTTACT
* * *
60786532 ATACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
** * *
60786572 ATATCCGGGCTAAGTCCCGAAGGCATTCATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * ** *
60786612 TTATCCGGGCTAAGACCCGAAGGCATTTGTGTGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
60786652 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
60786673 ATACTTGGGT
Statistics
Matches: 162, Mismatches: 19, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
39 13 0.08
40 111 0.69
41 1 0.01
43 37 0.23
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Found at i:60786592 original size:83 final size:80
Alignment explanation
Indices: 60786453--60786672 Score: 286
Period size: 83 Copynumber: 2.7 Consensus size: 80
60786443 CGGATGATAT
* * **
60786453 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
60786518 TGCGAGTAGTTG-CTATAC
66 TGC---TAG-TGACTATAC
60786536 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
* *
60786601 TGCTAGTGACTTTAT
66 TGCTAGTGACTATAC
* *
60786616 CCGGGCTAAGACCCGAAGGCATTTGTG-TGAGTTG-CTATATCC-GGCTAAATCCCGAAG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCT-AG-TGACTATATCCGGGCTAAGTCCCGAAG
60786673 ATACTTGGGT
Statistics
Matches: 126, Mismatches: 8, Indels: 10
0.88 0.06 0.07
Matches are distributed among these distances:
79 17 0.13
80 43 0.34
81 2 0.02
83 64 0.51
ACGTcount: A:0.23, C:0.24, G:0.27, T:0.26
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
TGCTAGTGACTATAC
Found at i:60790643 original size:22 final size:22
Alignment explanation
Indices: 60790604--60790646 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
60790594 ATCACTCTTC
* *
60790604 CTCTCCTTTTATTTTTCTTTTT
1 CTCTCCATTTATTATTCTTTTT
*
60790626 CTCTCCATTTGTTATTCTTTT
1 CTCTCCATTTATTATTCTTTT
60790647 CTTCTTCTGT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.07, C:0.23, G:0.02, T:0.67
Consensus pattern (22 bp):
CTCTCCATTTATTATTCTTTTT
Found at i:60791896 original size:27 final size:26
Alignment explanation
Indices: 60791856--60791943 Score: 113
Period size: 27 Copynumber: 3.2 Consensus size: 26
60791846 AGGAAGCATC
*
60791856 CTGGTGGCTATGCCACAATTCTCTGAT
1 CTGGTGGCTCTGCCACAATT-TCTGAT
*
60791883 CTGGTGGCTCTGCCACATATTTCTGTT
1 CTGGTGGCTCTGCCACA-ATTTCTGAT
*
60791910 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCACAATT-TCTG-AT
60791938 CTGGTG
1 CTGGTG
60791944 ACTCAGTCAG
Statistics
Matches: 54, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
26 3 0.06
27 41 0.76
28 10 0.19
ACGTcount: A:0.14, C:0.25, G:0.25, T:0.36
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACAATTTCTGAT
Found at i:60791956 original size:27 final size:27
Alignment explanation
Indices: 60791867--60791967 Score: 89
Period size: 27 Copynumber: 3.7 Consensus size: 27
60791857 TGGTGGCTAT
* * * * *
60791867 GCCACAATTCTCTGATCTGGTGGCTCT
1 GCCACGATTATCTGTTCTGGTGACTCA
* * *
60791894 GCCAC-ATATTTCTGTTCTGGTGGCTCT
1 GCCACGAT-TATCTGTTCTGGTGACTCA
60791921 GCCACGATTATCTGTATCTGGTGACTCA
1 GCCACGATTATCTGT-TCTGGTGACTCA
*
60791949 GTCA-GATTATCTGTTCTGG
1 GCCACGATTATCTGTTCTGG
60791968 CAGCCATGCT
Statistics
Matches: 65, Mismatches: 6, Indels: 7
0.83 0.08 0.09
Matches are distributed among these distances:
26 7 0.11
27 43 0.66
28 15 0.23
ACGTcount: A:0.16, C:0.25, G:0.23, T:0.37
Consensus pattern (27 bp):
GCCACGATTATCTGTTCTGGTGACTCA
Found at i:60791962 original size:54 final size:54
Alignment explanation
Indices: 60791856--60791967 Score: 136
Period size: 54 Copynumber: 2.1 Consensus size: 54
60791846 AGGAAGCATC
* * * *
60791856 CTGGTGGCTATGCCACAATTCTCTGATCTGGTGGCTCTGCCACATATTTCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCAGCCACATATATCTGTT
* * * *
60791910 CTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCAGTCAGAT-TATCTGTT
1 CTGGTGGCTATGCCACAATTATCTG-ATCTGGTGACTCAGCCACATATATCTGTT
60791964 CTGG
1 CTGG
60791968 CAGCCATGCT
Statistics
Matches: 49, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
54 33 0.67
55 16 0.33
ACGTcount: A:0.15, C:0.24, G:0.24, T:0.37
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCAGCCACATATATCTGTT
Found at i:60797077 original size:31 final size:30
Alignment explanation
Indices: 60797003--60797086 Score: 111
Period size: 29 Copynumber: 2.8 Consensus size: 30
60796993 AATCAGTCTC
60797003 AACATATACTGGGCTGAAGCC-TTTCATTA
1 AACATATACTGGGCTGAAGCCTTTTCATTA
60797032 AACGAT-TACTGGGCTGAAGCCTTTTCA-TA
1 AAC-ATATACTGGGCTGAAGCCTTTTCATTA
*
60797061 ATTCATATCACTGGGCTGAAGCCTTT
1 A-ACATAT-ACTGGGCTGAAGCCTTT
60797087 ACTGTAAACG
Statistics
Matches: 49, Mismatches: 1, Indels: 8
0.84 0.02 0.14
Matches are distributed among these distances:
29 23 0.47
30 9 0.18
31 17 0.35
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.32
Consensus pattern (30 bp):
AACATATACTGGGCTGAAGCCTTTTCATTA
Found at i:60797429 original size:11 final size:11
Alignment explanation
Indices: 60797398--60797445 Score: 57
Period size: 11 Copynumber: 4.6 Consensus size: 11
60797388 ATATGAATAC
60797398 ATCATGTGCAT
1 ATCATGTGCAT
*
60797409 ATCA--TACAT
1 ATCATGTGCAT
60797418 ATCATGTGCAT
1 ATCATGTGCAT
*
60797429 ATCATGT-CAA
1 ATCATGTGCAT
60797439 ATCATGT
1 ATCATGT
60797446 ACATCAAAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
9 8 0.25
10 9 0.28
11 15 0.47
ACGTcount: A:0.33, C:0.19, G:0.12, T:0.35
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:60797524 original size:25 final size:25
Alignment explanation
Indices: 60797481--60797528 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
60797471 CATAATTAAC
* **
60797481 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGTAAAACAGTCATTTTTA
60797506 CCTAGGGGTAAAACAGTCATTTT
1 CCTAGGGGTAAAACAGTCATTTT
60797529 CCATATTATA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.27, C:0.15, G:0.23, T:0.35
Consensus pattern (25 bp):
CCTAGGGGTAAAACAGTCATTTTTA
Found at i:60808362 original size:4 final size:4
Alignment explanation
Indices: 60808348--60808383 Score: 65
Period size: 4 Copynumber: 9.2 Consensus size: 4
60808338 AGCGTAGGTG
60808348 TATT T-TT TATT TATT TATT TATT TATT TATT TATT T
1 TATT TATT TATT TATT TATT TATT TATT TATT TATT T
60808384 TTAGTATAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
3 3 0.10
4 28 0.90
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (4 bp):
TATT
Found at i:60809427 original size:28 final size:29
Alignment explanation
Indices: 60809374--60809434 Score: 97
Period size: 28 Copynumber: 2.1 Consensus size: 29
60809364 TGAGCATGAC
60809374 TATAAATGTGATTTGGGCCTAATGGGCAA
1 TATAAATGTGATTTGGGCCTAATGGGCAA
* *
60809403 TATAAATGTGA-TTGGGCCTAGTGGGCCA
1 TATAAATGTGATTTGGGCCTAATGGGCAA
60809431 TATA
1 TATA
60809435 CAGGTATGTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
28 19 0.63
29 11 0.37
ACGTcount: A:0.30, C:0.11, G:0.28, T:0.31
Consensus pattern (29 bp):
TATAAATGTGATTTGGGCCTAATGGGCAA
Found at i:60821408 original size:27 final size:27
Alignment explanation
Indices: 60821378--60821533 Score: 163
Period size: 27 Copynumber: 5.7 Consensus size: 27
60821368 AAATTGTACA
*
60821378 GCACTAAGTGTGCGATTTGACTATGTT
1 GCACTAAGTGTGCGATTTGACTATGTG
** *
60821405 GCACTAAGTGTGCGAAATGAATATGAT-
1 GCACTAAGTGTGCGATTTGACTATG-TG
** *
60821432 GCACTAAGTGTGCGAAATGA-TCATGCG
1 GCACTAAGTGTGCGATTTGACT-ATGTG
* *
60821459 GCACTAGGTGTGCGAGTTTGACTATGTA
1 GCACTAAGTGTGCGA-TTTGACTATGTG
* *
60821487 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGATTTGACTATGTG
*
60821514 GCACTAAGTGTGCGAGTTGA
1 GCACTAAGTGTGCGATTTGA
60821534 TTACATAGCA
Statistics
Matches: 110, Mismatches: 14, Indels: 10
0.82 0.10 0.07
Matches are distributed among these distances:
26 1 0.01
27 87 0.79
28 21 0.19
29 1 0.01
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.29
Consensus pattern (27 bp):
GCACTAAGTGTGCGATTTGACTATGTG
Found at i:60821491 original size:82 final size:81
Alignment explanation
Indices: 60821378--60821528 Score: 223
Period size: 82 Copynumber: 1.9 Consensus size: 81
60821368 AAATTGTACA
* *
60821378 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACG-TGGCACTAAGTG
60821442 TGCGAAATGATCATGCG
65 TGCGAAATGATCATGCG
* ** *
60821459 GCACTAGGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTG
60821524 TGCGA
65 TGCGA
60821529 GTTGATTACA
Statistics
Matches: 62, Mismatches: 6, Indels: 3
0.87 0.08 0.04
Matches are distributed among these distances:
81 15 0.24
82 47 0.76
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGT
GCGAAATGATCATGCG
Found at i:60821500 original size:55 final size:54
Alignment explanation
Indices: 60821405--60821554 Score: 149
Period size: 55 Copynumber: 2.8 Consensus size: 54
60821395 TGACTATGTT
** * * *
60821405 GCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTGTGCGAAATGATCATGCG
1 GCACTAAGTGTGCGAGTTGACTA-CATAGCACTAAGTGTGCGAAATGATCACGCG
* ** ** * *
60821459 GCACTAGGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGAG-TTGACTACATAGCACTAAGTGTGCGAAATGATCACGCG
* *
60821514 GCACTAAGTGTGCGAGTTGATTACATAGCACTGAGTGTGCG
1 GCACTAAGTGTGCGAGTTGACTACATAGCACTAAGTGTGCG
60821555 GGCTCAATAT
Statistics
Matches: 78, Mismatches: 16, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
54 36 0.46
55 42 0.54
ACGTcount: A:0.27, C:0.15, G:0.30, T:0.28
Consensus pattern (54 bp):
GCACTAAGTGTGCGAGTTGACTACATAGCACTAAGTGTGCGAAATGATCACGCG
Found at i:60821534 original size:27 final size:27
Alignment explanation
Indices: 60821377--60821554 Score: 160
Period size: 27 Copynumber: 6.6 Consensus size: 27
60821367 TAAATTGTAC
* *
60821377 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGAATTGATTATGT
* * *
60821404 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGAATTGATTATGT
* * *
60821430 ATGCACTAAGTGTGCGAAATGATCATGC
1 A-GCACTAAGTGTGCGAATTGATTATGT
* * * *
60821458 GGCACTAGGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-ATTGATTATGT
* *
60821486 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGAATTGATTATGT
* * **
60821513 GGCACTAAGTGTGCGAGTTGATTACAT
1 AGCACTAAGTGTGCGAATTGATTATGT
*
60821540 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
60821555 GGCTCAATAT
Statistics
Matches: 125, Mismatches: 23, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
27 105 0.84
28 20 0.16
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAATTGATTATGT
Found at i:60821552 original size:82 final size:79
Alignment explanation
Indices: 60821376--60821554 Score: 200
Period size: 82 Copynumber: 2.2 Consensus size: 79
60821366 TTAAATTGTA
* *
60821376 CAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGT
1 CAGCACT-AGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGT
60821441 GTGCGAAATGATCAT
65 GTGCGAAATGATCAT
* ** *
60821456 GCGGCACTAGGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACTA
1 -CAGCACTA-GTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACTA
**
60821520 AGTGTGCGAGTTGATTACAT
62 AGTGTGCGAAATGA-T-CAT
60821540 -AGCACTGAGTGTGCG
1 CAGCACT-AGTGTGCG
60821555 GGCTCAATAT
Statistics
Matches: 83, Mismatches: 9, Indels: 11
0.81 0.09 0.11
Matches are distributed among these distances:
80 1 0.01
81 15 0.18
82 62 0.75
83 2 0.02
84 3 0.04
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.29
Consensus pattern (79 bp):
CAGCACTAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGTG
TGCGAAATGATCAT
Found at i:60833426 original size:46 final size:46
Alignment explanation
Indices: 60833359--60833532 Score: 203
Period size: 46 Copynumber: 3.8 Consensus size: 46
60833349 TGTAACCCGC
* *
60833359 CCATAAGTGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
*
60833405 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCAT
* * * * *
60833455 --TTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
60833498 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCG
60833533 AATGCTCAAC
Statistics
Matches: 107, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 1 0.01
45 2 0.02
46 61 0.57
47 28 0.26
48 3 0.03
49 1 0.01
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
Found at i:60833478 original size:93 final size:93
Alignment explanation
Indices: 60833367--60833537 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
60833357 GCCCATAAGT
* * *
60833367 GAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
60833432 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGAATGCCTAGTTACATTTCAC
*
60833460 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
60833525 CGAGTTCGAATGC
66 CGAGTTCGAATGC
60833538 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGAATGCCTAGTTACATTTCAC
Found at i:60833991 original size:30 final size:30
Alignment explanation
Indices: 60833957--60834016 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
60833947 ATTTAATACG
60833957 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
60833987 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
60834017 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:60840197 original size:47 final size:47
Alignment explanation
Indices: 60840143--60840336 Score: 280
Period size: 47 Copynumber: 4.1 Consensus size: 47
60840133 TTAGGATGTT
** * *
60840143 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
60840190 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
60840237 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * * *
60840284 ATATGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
60840331 ATGTGA
1 ATGTGA
60840337 AATATGTATG
Statistics
Matches: 131, Mismatches: 16, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 131 1.00
ACGTcount: A:0.34, C:0.11, G:0.29, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:60840243 original size:22 final size:22
Alignment explanation
Indices: 60840172--60840243 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
60840162 GTATATATGA
60840172 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
* * *
60840194 GATGAATG-TGAACAT-GCATATATGT
1 GAT-AAGGCCG-A-ATGGC-CA-ATGT
60840219 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
60840241 GAT
1 GAT
60840244 GAATGTGAGC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 11 0.30
23 9 0.24
24 9 0.24
25 8 0.22
ACGTcount: A:0.33, C:0.14, G:0.29, T:0.24
Consensus pattern (22 bp):
GATAAGGCCGAATGGCCAATGT
Found at i:60840364 original size:48 final size:48
Alignment explanation
Indices: 60840307--60840442 Score: 211
Period size: 50 Copynumber: 2.8 Consensus size: 48
60840297 GAACATGCAT
60840307 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGC
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGC
* *
60840355 ATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATGAGATATGT
1 ATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATGTATGAGATATGC
*
60840405 ATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
60840443 GGCGATGTGC
Statistics
Matches: 80, Mismatches: 4, Indels: 8
0.87 0.04 0.09
Matches are distributed among these distances:
47 1 0.01
48 33 0.41
49 4 0.05
50 41 0.51
51 1 0.01
ACGTcount: A:0.36, C:0.07, G:0.26, T:0.30
Consensus pattern (48 bp):
ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGC
Found at i:60840457 original size:50 final size:50
Alignment explanation
Indices: 60840301--60840463 Score: 201
Period size: 50 Copynumber: 3.3 Consensus size: 50
60840291 GAATATGAAC
*
60840301 ATGCATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAT
1 ATGCGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAT
*
60840351 ATGC--ATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATGAGAT
1 ATGCGTATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATGTATGAGAT
* * *
60840401 AT--GTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTAGGCGAT
1 ATGCGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAT
*
60840449 GTGCGTATATTGTGG
1 ATGCGTATA-TGTGG
60840464 CCGAACGACC
Statistics
Matches: 98, Mismatches: 6, Indels: 17
0.81 0.05 0.14
Matches are distributed among these distances:
47 1 0.01
48 38 0.39
49 4 0.04
50 49 0.50
51 6 0.06
ACGTcount: A:0.33, C:0.08, G:0.28, T:0.31
Consensus pattern (50 bp):
ATGCGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAT
Found at i:60840639 original size:37 final size:35
Alignment explanation
Indices: 60840589--60840692 Score: 122
Period size: 37 Copynumber: 2.9 Consensus size: 35
60840579 GGAAATATAT
*
60840589 TCCGGGTAAGACCCGATGACTGCGTGTGGAGGTTATG
1 TCCGGGTAAGACCCGAT-ACT-CGTGTGGAGATTATG
*
60840626 TCCGGGTAAGACCCGATA--CGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATACTCGTGTGGAGATTATG
**
60840659 TCCGGGTAAGACTTGATAACTTCGTGTGGAGATT
1 TCCGGGTAAGACCCGAT-AC-TCGTGTGGAGATT
60840693 TCGTCTGAGC
Statistics
Matches: 59, Mismatches: 4, Indels: 8
0.83 0.06 0.11
Matches are distributed among these distances:
33 28 0.47
34 1 0.02
36 1 0.02
37 29 0.49
ACGTcount: A:0.21, C:0.17, G:0.34, T:0.28
Consensus pattern (35 bp):
TCCGGGTAAGACCCGATACTCGTGTGGAGATTATG
Found at i:60840661 original size:33 final size:35
Alignment explanation
Indices: 60840589--60840670 Score: 114
Period size: 33 Copynumber: 2.3 Consensus size: 35
60840579 GGAAATATAT
*
60840589 TCCGGGTAAGACCCGATGACTGCGTGTGGAGGTTATG
1 TCCGGGTAAGACCCGATGAC--CGTGTGGAGATTATG
*
60840626 TCCGGGTAAGACCCGAT-A-CGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACCGTGTGGAGATTATG
60840659 TCCGGGTAAGAC
1 TCCGGGTAAGAC
60840671 TTGATAACTT
Statistics
Matches: 43, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
33 25 0.58
36 1 0.02
37 17 0.40
ACGTcount: A:0.21, C:0.20, G:0.35, T:0.24
Consensus pattern (35 bp):
TCCGGGTAAGACCCGATGACCGTGTGGAGATTATG
Found at i:60847641 original size:20 final size:21
Alignment explanation
Indices: 60847616--60847654 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
60847606 TGGGCCCGTA
*
60847616 AGCCTATTG-GGCCCAATTTT
1 AGCCTATCGAGGCCCAATTTT
60847636 AGCCTATCGAGGCCCAATT
1 AGCCTATCGAGGCCCAATT
60847655 ACCAAAGTGC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.23, C:0.28, G:0.21, T:0.28
Consensus pattern (21 bp):
AGCCTATCGAGGCCCAATTTT
Found at i:60849929 original size:28 final size:27
Alignment explanation
Indices: 60849868--60849929 Score: 97
Period size: 28 Copynumber: 2.3 Consensus size: 27
60849858 ATTTACTAAA
* *
60849868 ATACCCCTAAGTATGACAATTACCATT
1 ATACCCCTAAGTATGAAAATGACCATT
60849895 ATACCCCTAAGTATGCAAAATGACCATT
1 ATACCCCTAAGTATG-AAAATGACCATT
60849923 ATACCCC
1 ATACCCC
60849930 CAGGGTTAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
27 15 0.47
28 17 0.53
ACGTcount: A:0.37, C:0.29, G:0.08, T:0.26
Consensus pattern (27 bp):
ATACCCCTAAGTATGAAAATGACCATT
Found at i:60850106 original size:27 final size:26
Alignment explanation
Indices: 60850035--60850147 Score: 127
Period size: 27 Copynumber: 4.2 Consensus size: 26
60850025 TGGAGGAAGC
60850035 GTTCTGGTGGCTATGCCACAATTATCT
1 GTTCTGGTGGCTATGCCACAA-TATCT
*
60850062 GTTTCTGGTGGCTATGCCACAGATATTT
1 G-TTCTGGTGGCTATGCCACA-ATATCT
* *
60850090 GTTCTAGTGGCTCTGCCACAATATCT
1 GTTCTGGTGGCTATGCCACAATATCT
* * * *
60850116 ATATCTGGTGACTCTGTCACAATATCT
1 GT-TCTGGTGGCTATGCCACAATATCT
60850143 GTTCT
1 GTTCT
60850148 AGCAGCCATG
Statistics
Matches: 74, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
26 9 0.12
27 40 0.54
28 24 0.32
29 1 0.01
ACGTcount: A:0.19, C:0.22, G:0.20, T:0.38
Consensus pattern (26 bp):
GTTCTGGTGGCTATGCCACAATATCT
Found at i:60852737 original size:22 final size:24
Alignment explanation
Indices: 60852685--60852741 Score: 73
Period size: 22 Copynumber: 2.4 Consensus size: 24
60852675 TTTGAAAGTC
60852685 CGCACACATAGTGCTCTTACTTATT
1 CGCACACATAGTGCTC-TACTTATT
*
60852710 CGCACACATAGTGC-C-ACTTTTT
1 CGCACACATAGTGCTCTACTTATT
*
60852732 CTCACACATA
1 CGCACACATA
60852742 TAGTGCCATT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
22 15 0.50
24 1 0.03
25 14 0.47
ACGTcount: A:0.26, C:0.32, G:0.11, T:0.32
Consensus pattern (24 bp):
CGCACACATAGTGCTCTACTTATT
Found at i:60863987 original size:40 final size:40
Alignment explanation
Indices: 60863943--60864127 Score: 198
Period size: 40 Copynumber: 4.7 Consensus size: 40
60863933 GCTACTCGTT
* *
60863943 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCA
* * * *
60863983 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGTA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCA
* * *
60864023 CCAATGCCTTCGGG-CTTAGCCC-GAAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTAGCA
* * *
60864062 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TAGCA
*
60864103 CAAA-GCCTTCAGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
60864128 CATCATTCGA
Statistics
Matches: 121, Mismatches: 18, Indels: 12
0.80 0.12 0.08
Matches are distributed among these distances:
38 4 0.03
39 28 0.23
40 75 0.62
41 14 0.12
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCA
Found at i:60864088 original size:79 final size:80
Alignment explanation
Indices: 60863920--60864074 Score: 201
Period size: 79 Copynumber: 2.0 Consensus size: 80
60863910 CCTTCGAAAT
* * **
60863920 TTAA-CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTAGCA
1 TTAACCCGGATTTAG-TAACTCGTACAAATGCCTTCGGGACATAGCCCGAATATAGTAACTAGCA
60863983 CAAATGCCTTCGGGAC
65 CAAATGCCTTCGGGAC
* * *
60863999 TTAACCCGGATTTAGTAACTCGTACCAATGCCTTCGGG-CTTAGCCCGAA-ATTAGTAACTCGCA
1 TTAACCCGGATTTAGTAACTCGTACAAATGCCTTCGGGACATAGCCCGAATA-TAGTAACTAGCA
60864062 CAAATGCCTTCGG
65 CAAATGCCTTCGG
60864075 ATCTTAGTCC
Statistics
Matches: 66, Mismatches: 7, Indels: 6
0.84 0.09 0.08
Matches are distributed among these distances:
78 1 0.02
79 37 0.56
80 28 0.42
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.26
Consensus pattern (80 bp):
TTAACCCGGATTTAGTAACTCGTACAAATGCCTTCGGGACATAGCCCGAATATAGTAACTAGCAC
AAATGCCTTCGGGAC
Found at i:60864111 original size:79 final size:79
Alignment explanation
Indices: 60863971--60864125 Score: 181
Period size: 79 Copynumber: 1.9 Consensus size: 79
60863961 AGCCCGGTTA
* *
60863971 TAGTAACTAGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGTACCAATGCCTTC-G
1 TAGTAACTAGCACAAATGCCTTCGGGACTTAACCCGGATATAGTAACTC-TACCAAAGCCTTCAG
*
60864035 GGCTTAGCCCGAAAT
65 GACTTAGCCCGAAAT
* ** * *
60864050 TAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACT-TAGCACAAAGCCTTC
1 TAGTAACTAGCACAAATGCCTTCGGGA-CTTAACCCGGATATAGTAACTCTA-C-CAAAGCCTTC
60864113 AGGACTTAGCCCG
63 AGGACTTAGCCCG
60864126 GACATCATTC
Statistics
Matches: 64, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
77 2 0.03
78 4 0.06
79 47 0.73
80 11 0.17
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (79 bp):
TAGTAACTAGCACAAATGCCTTCGGGACTTAACCCGGATATAGTAACTCTACCAAAGCCTTCAGG
ACTTAGCCCGAAAT
Found at i:60870118 original size:40 final size:40
Alignment explanation
Indices: 60870081--60870263 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
60870071 GCTACTCGTT
*
60870081 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
60870121 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCA
* *
60870161 CCAATGCCTTCGGG-CTTAGCCCGG-AATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
* * * * *
60870200 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGTTATAGTAAC-TCGCA
60870241 CAAA-GCCTTC-GGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
60870264 ACATCATTCG
Statistics
Matches: 124, Mismatches: 12, Indels: 15
0.82 0.08 0.10
Matches are distributed among these distances:
38 2 0.02
39 40 0.32
40 71 0.57
41 11 0.09
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Done.