Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 188 of 349
Found at i:60870192 original size:79 final size:80
Alignment explanation
Indices: 60870083--60870264 Score: 219
Period size: 79 Copynumber: 2.3 Consensus size: 80
60870073 TACTCGTTCA
* *
60870083 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGG-CTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
60870146 ATTTAGTAAC-TCGCACC
64 ATATAGTAACTTAGCA-C
**
60870163 AATGCCTTCGGGCTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGAT
1 AATGCCTTCGGGCTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGAT
* *
60870227 ATGGTCACTTAGCAC
66 ATAGTAACTTAGCAC
* *
60870242 AAAGCCTTCGGACTTAGCCCGGA
1 AATGCCTTCGGGCTTAGCCCGGA
60870265 CATCATTCGA
Statistics
Matches: 89, Mismatches: 10, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 69 0.78
80 17 0.19
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (80 bp):
AATGCCTTCGGGCTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGAT
ATAGTAACTTAGCAC
Found at i:60880075 original size:28 final size:28
Alignment explanation
Indices: 60880012--60880245 Score: 366
Period size: 28 Copynumber: 8.4 Consensus size: 28
60880002 ATATTAAGTC
* *
60880012 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
60880039 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
60880067 CGCACACTTAGTGCTACA-AATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
60880094 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
60880122 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
60880150 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
* *
60880178 CGCACACTTAGTGCTACATAGTCAGACT
1 CGCACACTTAGTGCTACATAATCAAACT
* *
60880206 CGCACACTTAGTGCTGTACA-ATTTAAACT
1 CGCACACTTAGTGC--TACATAATCAAACT
60880235 CGCACACTTAG
1 CGCACACTTAG
60880246 CGCCAATCTC
Statistics
Matches: 196, Mismatches: 7, Indels: 6
0.94 0.03 0.03
Matches are distributed among these distances:
27 49 0.25
28 126 0.64
29 17 0.09
30 4 0.02
ACGTcount: A:0.34, C:0.28, G:0.12, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTACATAATCAAACT
Found at i:60888317 original size:28 final size:28
Alignment explanation
Indices: 60888254--60888433 Score: 303
Period size: 28 Copynumber: 6.5 Consensus size: 28
60888244 ATATTAAGTC
* *
60888254 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
60888281 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
60888309 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
60888337 CTCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
60888365 CGCACACTTAGTGCTACAT-ATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
60888392 CGCACACTTAGTGCTACATAATC-AACT
1 CGCACACTTAGTGCTACATAATCAAACT
60888419 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
60888434 GTACAATTTA
Statistics
Matches: 147, Mismatches: 4, Indels: 4
0.95 0.03 0.03
Matches are distributed among these distances:
27 68 0.46
28 79 0.54
ACGTcount: A:0.33, C:0.29, G:0.11, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTACATAATCAAACT
Found at i:60888395 original size:83 final size:82
Alignment explanation
Indices: 60888254--60888433 Score: 299
Period size: 83 Copynumber: 2.2 Consensus size: 82
60888244 ATATTAAGTC
* * *
60888254 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTATATAATCAAACTCGCACACTTA
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTTA
60888319 GTGCTACATAATCAAACT
66 GTGCTACATAATC-AACT
*
60888337 CTCACACTTAGTGCTACATAATCAAACTCGCACACTTAGTGCTACAT-ATCAAACTCGCACACTT
1 CGCACACTTAGTGCTACATAATC-AACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTT
60888401 AGTGCTACATAATCAACT
65 AGTGCTACATAATCAACT
60888419 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
60888434 GTACAATTTA
Statistics
Matches: 91, Mismatches: 5, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
82 18 0.20
83 51 0.56
84 22 0.24
ACGTcount: A:0.33, C:0.29, G:0.11, T:0.27
Consensus pattern (82 bp):
CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTTA
GTGCTACATAATCAACT
Found at i:60891068 original size:54 final size:56
Alignment explanation
Indices: 60890999--60891204 Score: 350
Period size: 54 Copynumber: 3.8 Consensus size: 56
60890989 ATATTAAGTC
* * *
60890999 CGCACACTCAGTGCTATATAATC-AACTCGCACACTTAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTACATAATCAAACTCGCACACTTAGTGCTACATAATCAAACT
60891053 CGCACACTTAGTGCTACATAATCAAACTCGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACTCGCACACTTAGTGCTACATAATCAAACT
60891109 CGCACACTTAGTGCTAC--AATCAAACTCGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACTCGCACACTTAGTGCTACATAATCAAACT
60891163 CGCACACTTAGTGCTACATAATC-AACTCGCACACTTAGTGCT
1 CGCACACTTAGTGCTACATAATCAAACTCGCACACTTAGTGCT
60891205 GTACAATTTA
Statistics
Matches: 145, Mismatches: 3, Indels: 7
0.94 0.02 0.05
Matches are distributed among these distances:
54 75 0.52
55 45 0.31
56 25 0.17
ACGTcount: A:0.33, C:0.29, G:0.12, T:0.26
Consensus pattern (56 bp):
CGCACACTTAGTGCTACATAATCAAACTCGCACACTTAGTGCTACATAATCAAACT
Found at i:60891089 original size:28 final size:28
Alignment explanation
Indices: 60890999--60891204 Score: 350
Period size: 28 Copynumber: 7.5 Consensus size: 28
60890989 ATATTAAGTC
* *
60890999 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
60891026 CGCACACTTAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTACATAATCAAACT
60891053 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
60891081 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
60891109 CGCACACTTAGTGCTAC--AATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
60891135 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
60891163 CGCACACTTAGTGCTACATAATC-AACT
1 CGCACACTTAGTGCTACATAATCAAACT
60891190 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
60891205 GTACAATTTA
Statistics
Matches: 174, Mismatches: 2, Indels: 6
0.96 0.01 0.03
Matches are distributed among these distances:
26 26 0.15
27 67 0.39
28 81 0.47
ACGTcount: A:0.33, C:0.29, G:0.12, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTACATAATCAAACT
Found at i:60891136 original size:82 final size:82
Alignment explanation
Indices: 60890999--60891229 Score: 367
Period size: 82 Copynumber: 2.8 Consensus size: 82
60890989 ATATTAAGTC
* * *
60890999 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTATATAATC-AACTCGCACACTTA
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCT-TACAATCAAACTCGCACACTTA
60891063 GTGCTACATAATCAAACT
65 GTGCTACATAATCAAACT
60891081 CGCACACTTAGTGCTACATAATCAAACTCGCACACTTAGTGC-TACAATCAAACTCGCACACTTA
1 CGCACACTTAGTGCTACATAATC-AACTCGCACACTTAGTGCTTACAATCAAACTCGCACACTTA
60891145 GTGCTACATAATCAAACT
65 GTGCTACATAATCAAACT
* *
60891163 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTGTACAATTTAAACCCGCACACTT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCT-TACAA-TCAAACTCGCACACTT
60891228 AG
64 AG
60891230 CGCCAATCTC
Statistics
Matches: 139, Mismatches: 5, Indels: 8
0.91 0.03 0.05
Matches are distributed among these distances:
81 24 0.17
82 76 0.55
83 23 0.17
84 16 0.12
ACGTcount: A:0.34, C:0.29, G:0.12, T:0.26
Consensus pattern (82 bp):
CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTTACAATCAAACTCGCACACTTAG
TGCTACATAATCAAACT
Found at i:60899359 original size:28 final size:28
Alignment explanation
Indices: 60899296--60899477 Score: 330
Period size: 28 Copynumber: 6.5 Consensus size: 28
60899286 ATATTAAGTC
* *
60899296 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
60899323 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
60899351 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
60899379 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
60899407 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
60899435 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
60899463 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
60899478 GTACAATTTA
Statistics
Matches: 152, Mismatches: 2, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
27 22 0.14
28 130 0.86
ACGTcount: A:0.34, C:0.29, G:0.12, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTACATAATCAAACT
Found at i:60902866 original size:20 final size:21
Alignment explanation
Indices: 60902841--60902879 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
60902831 TAATTTCTTC
*
60902841 TTTTATTCCTATT-TTTATTT
1 TTTTATTCATATTATTTATTT
60902861 TTTTATTCATATTATTTAT
1 TTTTATTCATATTATTTAT
60902880 GATATTATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.21, C:0.08, G:0.00, T:0.72
Consensus pattern (21 bp):
TTTTATTCATATTATTTATTT
Found at i:60908798 original size:42 final size:42
Alignment explanation
Indices: 60908747--60908861 Score: 124
Period size: 44 Copynumber: 2.7 Consensus size: 42
60908737 CAGATGCCTC
* * * * *
60908747 TGTCTCAGACAGGGTCTTACACGAAATC-AGATACGATGCCGG
1 TGTCCCAGACACGGTCTTACACGAAATCTAAAT-CAAGGCCGG
* *
60908789 TGTCCCAGACATGGTCTTACACGTAAATCTTAAATCAAGGCCTG
1 TGTCCCAGACACGGTCTTACACG-AAATC-TAAATCAAGGCCGG
*
60908833 TGTCCCAGACACGGTCTTACACGATATCT
1 TGTCCCAGACACGGTCTTACACGAAATCT
60908862 CAGATCTATG
Statistics
Matches: 62, Mismatches: 8, Indels: 6
0.82 0.11 0.08
Matches are distributed among these distances:
42 22 0.35
43 9 0.15
44 28 0.45
45 3 0.05
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (42 bp):
TGTCCCAGACACGGTCTTACACGAAATCTAAATCAAGGCCGG
Found at i:60909929 original size:162 final size:162
Alignment explanation
Indices: 60909662--60909989 Score: 656
Period size: 162 Copynumber: 2.0 Consensus size: 162
60909652 TTTTTGGCTA
60909662 TCATGCATGATAAAATGGCTTCCATTCATTTTATTTTATTAATCATAACATTAAAAATAAGTTTA
1 TCATGCATGATAAAATGGCTTCCATTCATTTTATTTTATTAATCATAACATTAAAAATAAGTTTA
60909727 CCATTTTACCCTTAATGAATTAACATAAAATTTTACCTAACACATGTCCTTTTATGACAAAATGC
66 CCATTTTACCCTTAATGAATTAACATAAAATTTTACCTAACACATGTCCTTTTATGACAAAATGC
60909792 ACTATCAATGGTCAAATTGACATGCAAGTGCT
131 ACTATCAATGGTCAAATTGACATGCAAGTGCT
60909824 TCATGCATGATAAAATGGCTTCCATTCATTTTATTTTATTAATCATAACATTAAAAATAAGTTTA
1 TCATGCATGATAAAATGGCTTCCATTCATTTTATTTTATTAATCATAACATTAAAAATAAGTTTA
60909889 CCATTTTACCCTTAATGAATTAACATAAAATTTTACCTAACACATGTCCTTTTATGACAAAATGC
66 CCATTTTACCCTTAATGAATTAACATAAAATTTTACCTAACACATGTCCTTTTATGACAAAATGC
60909954 ACTATCAATGGTCAAATTGACATGCAAGTGCT
131 ACTATCAATGGTCAAATTGACATGCAAGTGCT
60909986 TCAT
1 TCAT
60909990 ACTTTCTTTT
Statistics
Matches: 166, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
162 166 1.00
ACGTcount: A:0.37, C:0.17, G:0.09, T:0.37
Consensus pattern (162 bp):
TCATGCATGATAAAATGGCTTCCATTCATTTTATTTTATTAATCATAACATTAAAAATAAGTTTA
CCATTTTACCCTTAATGAATTAACATAAAATTTTACCTAACACATGTCCTTTTATGACAAAATGC
ACTATCAATGGTCAAATTGACATGCAAGTGCT
Found at i:60911587 original size:29 final size:29
Alignment explanation
Indices: 60911523--60911633 Score: 113
Period size: 29 Copynumber: 3.9 Consensus size: 29
60911513 TACATACATG
60911523 CATATGGCCCACTT-GGCCC--ATC-TCATT
1 CATATGGCCCA-TTAGGCCCAAATCAT-ATT
* *
60911550 CATATGGCCCATCAGGCCCAATTCATATT
1 CATATGGCCCATTAGGCCCAAATCATATT
* **
60911579 CATATGGCCTATTAGGCCCAAATCACCTT
1 CATATGGCCCATTAGGCCCAAATCATATT
* *
60911608 TATATGGCCCGTTAGGCCCAAATCAT
1 CATATGGCCCATTAGGCCCAAATCAT
60911634 GTTATATTCA
Statistics
Matches: 69, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
26 1 0.01
27 16 0.23
29 51 0.74
30 1 0.01
ACGTcount: A:0.25, C:0.32, G:0.15, T:0.28
Consensus pattern (29 bp):
CATATGGCCCATTAGGCCCAAATCATATT
Found at i:60913334 original size:27 final size:27
Alignment explanation
Indices: 60913296--60913359 Score: 128
Period size: 27 Copynumber: 2.4 Consensus size: 27
60913286 TTGTATTGTA
60913296 TTAGATCGAGAACAAAGAAAATCAGAC
1 TTAGATCGAGAACAAAGAAAATCAGAC
60913323 TTAGATCGAGAACAAAGAAAATCAGAC
1 TTAGATCGAGAACAAAGAAAATCAGAC
60913350 TTAGATCGAG
1 TTAGATCGAG
60913360 GAAAGTATAA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 37 1.00
ACGTcount: A:0.48, C:0.14, G:0.20, T:0.17
Consensus pattern (27 bp):
TTAGATCGAGAACAAAGAAAATCAGAC
Found at i:60913689 original size:42 final size:43
Alignment explanation
Indices: 60913589--60913706 Score: 116
Period size: 43 Copynumber: 2.8 Consensus size: 43
60913579 CTGAGACATT
* * *
60913589 GTGTAAGACCGTGTCTGGGACATAGGCCTCGATTGAGATTTAT
1 GTGTAAGACCATGTCTGGGACATAGGCATCGATTGAGATTTAC
* *
60913632 GTATAAGACCATGTCTGGGACATCGGCATCGTATCT-A-ATTT-C
1 GTGTAAGACCATGTCTGGGACATAGGCATCG-AT-TGAGATTTAC
* * * *
60913674 GTGTAAGACCCTGTCTGAGATAGAGGCATCGAT
1 GTGTAAGACCATGTCTGGGACATAGGCATCGAT
60913707 ATTATACTAC
Statistics
Matches: 62, Mismatches: 11, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
41 2 0.03
42 25 0.40
43 31 0.50
44 3 0.05
45 1 0.02
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (43 bp):
GTGTAAGACCATGTCTGGGACATAGGCATCGATTGAGATTTAC
Found at i:60924563 original size:13 final size:14
Alignment explanation
Indices: 60924535--60924568 Score: 52
Period size: 13 Copynumber: 2.5 Consensus size: 14
60924525 TAATATTTCA
*
60924535 ATTATTTTTATGTT
1 ATTATATTTATGTT
60924549 ATTATATTT-TGTT
1 ATTATATTTATGTT
60924562 ATTATAT
1 ATTATAT
60924569 GAGATGTGGC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 11 0.58
14 8 0.42
ACGTcount: A:0.26, C:0.00, G:0.06, T:0.68
Consensus pattern (14 bp):
ATTATATTTATGTT
Found at i:60924792 original size:50 final size:50
Alignment explanation
Indices: 60924717--60925044 Score: 299
Period size: 50 Copynumber: 6.5 Consensus size: 50
60924707 GTGAGTCACG
60924717 TGTGTAGTACTAAGTGCT-GGCTACTACGTGTACCAGATTGATAGGTTGCA
1 TGTGTAGTACTAAGTG-TAGGCTACTACGTGTACCAGATTGATAGGTTGCA
* * * ** *
60924767 TGTGTAGTACTAAGTGTAGGCTACTATGTGTACCCG-TTAACTTCGAT-CA
1 TGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATTGA-TAGGTTGCA
* * * * * ** **
60924816 TGTGTGTAGTACTAAGTGTAGGCTAATACATGTATCAGATGGTTAAATCACA
1 --TGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATTGATAGGTTGCA
* * * *
60924868 TGTGTCGTACTAAGTGCAGGCTACTACATGTACCAGATTGATAGGTCGCA
1 TGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATTGATAGGTTGCA
* * **
60924918 TGTGTAGTACTAAGTGTAGGCTACTATGTGTACCCG-TT-A-ACCTTGATCA
1 TGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATTGATAGGTTG--CA
* * * *
60924967 TGTGTGTAGTACTAAGTGTAGGCTACTACTTATACCATATTGATAGGTTGTA
1 --TGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATTGATAGGTTGCA
60925019 TGTGTAGTACTAAGTGTAGGCTACTA
1 TGTGTAGTACTAAGTGTAGGCTACTA
60925045 TGCATACCAG
Statistics
Matches: 221, Mismatches: 44, Indels: 26
0.76 0.15 0.09
Matches are distributed among these distances:
47 3 0.01
48 1 0.00
49 10 0.05
50 133 0.60
51 63 0.29
52 6 0.03
53 1 0.00
54 4 0.02
ACGTcount: A:0.27, C:0.16, G:0.24, T:0.34
Consensus pattern (50 bp):
TGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATTGATAGGTTGCA
Found at i:60924900 original size:101 final size:101
Alignment explanation
Indices: 60924716--60924901 Score: 239
Period size: 101 Copynumber: 1.8 Consensus size: 101
60924706 TGTGAGTCAC
* * * ** **
60924716 GTGTGTAGTACTAAGTGCTGGCTACTACGTGTACCAGATTGATAGGTTGCATGTGTAGTACTAAG
1 GTGTGTAGTACTAAGTGCTGGCTAATACATGTACCAGATGGATAAATCACATGTGTAGTACTAAG
* **
60924781 TGTAGGCTACTATGTGTACCCGTTAACTTCGATCAT
66 TGCAGGCTACTACATGTACCCGTTAACTTCGATCAT
* * *
60924817 GTGTGTAGTACTAAGTG-TAGGCTAATACATGTATCAGATGGTTAAATCACATGTGTCGTACTAA
1 GTGTGTAGTACTAAGTGCT-GGCTAATACATGTACCAGATGGATAAATCACATGTGTAGTACTAA
60924881 GTGCAGGCTACTACATGTACC
65 GTGCAGGCTACTACATGTACC
60924902 AGATTGATAG
Statistics
Matches: 71, Mismatches: 13, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
100 1 0.01
101 70 0.99
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (101 bp):
GTGTGTAGTACTAAGTGCTGGCTAATACATGTACCAGATGGATAAATCACATGTGTAGTACTAAG
TGCAGGCTACTACATGTACCCGTTAACTTCGATCAT
Found at i:60924991 original size:151 final size:151
Alignment explanation
Indices: 60924712--60924991 Score: 499
Period size: 151 Copynumber: 1.9 Consensus size: 151
60924702 TCGTTGTGAG
* * * *
60924712 TCACGTGTGTAGTACTAAGTGCTGGCTACTACGTGTACCAGATTGATAGGTTGCATGTGTAGTAC
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATTGATAGGTCGCATGTGTAGTAC
60924777 TAAGTGTAGGCTACTATGTGTACCCGTTAACTTCGATCATGTGTGTAGTACTAAGTGTAGGCTAA
66 TAAGTGTAGGCTACTATGTGTACCCGTTAACTTCGATCATGTGTGTAGTACTAAGTGTAGGCTAA
60924842 TACATGTATCAGATGGTTAAA
131 TACATGTATCAGATGGTTAAA
*
60924863 TCACATGTGTCGTACTAAGTGCAGGCTACTACATGTACCAGATTGATAGGTCGCATGTGTAGTAC
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATTGATAGGTCGCATGTGTAGTAC
60924928 TAAGTGTAGGCTACTATGTGTACCCGTTAACCTT-GATCATGTGTGTAGTACTAAGTGTAGGCTA
66 TAAGTGTAGGCTACTATGTGTACCCGTTAA-CTTCGATCATGTGTGTAGTACTAAGTGTAGGCTA
60924992 CTACTTATAC
Statistics
Matches: 123, Mismatches: 5, Indels: 2
0.95 0.04 0.02
Matches are distributed among these distances:
151 120 0.98
152 3 0.02
ACGTcount: A:0.26, C:0.16, G:0.25, T:0.33
Consensus pattern (151 bp):
TCACATGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATTGATAGGTCGCATGTGTAGTAC
TAAGTGTAGGCTACTATGTGTACCCGTTAACTTCGATCATGTGTGTAGTACTAAGTGTAGGCTAA
TACATGTATCAGATGGTTAAA
Found at i:60925022 original size:151 final size:151
Alignment explanation
Indices: 60924712--60925044 Score: 488
Period size: 151 Copynumber: 2.2 Consensus size: 151
60924702 TCGTTGTGAG
* * * *
60924712 TCACGTGTGTAGTACTAAGTGCTGGCTACTACGTGTACCAGATTGATAGGTTGCATGTGTAGTAC
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATTGATAGGTCGCATGTGTAGTAC
60924777 TAAGTGTAGGCTACTATGTGTACCCGTTAACTTCGATCATGTGTGTAGTACTAAGTGTAGGCTAA
66 TAAGTGTAGGCTACTATGTGTACCCGTTAACTTCGATCATGTGTGTAGTACTAAGTGTAGGCTAA
* * *
60924842 TACATGTATCAGATGGTTAAA
131 TACATATACCAGATGGATAAA
*
60924863 TCACATGTGTCGTACTAAGTGCAGGCTACTACATGTACCAGATTGATAGGTCGCATGTGTAGTAC
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATTGATAGGTCGCATGTGTAGTAC
60924928 TAAGTGTAGGCTACTATGTGTACCCGTTAACCTT-GATCATGTGTGTAGTACTAAGTGTAGGCTA
66 TAAGTGTAGGCTACTATGTGTACCCGTTAA-CTTCGATCATGTGTGTAGTACTAAGTGTAGGCTA
* * * * **
60924992 CTACTTATACCATATTGATAGG
130 ATACATATACCAGATGGATAAA
*** *
60925014 TTGTATGTGTAGTACTAAGTGTAGGCTACTA
1 TCACATGTGTAGTACTAAGTGCAGGCTACTA
60925045 TGCATACCAG
Statistics
Matches: 162, Mismatches: 19, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
151 159 0.98
152 3 0.02
ACGTcount: A:0.26, C:0.16, G:0.24, T:0.33
Consensus pattern (151 bp):
TCACATGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATTGATAGGTCGCATGTGTAGTAC
TAAGTGTAGGCTACTATGTGTACCCGTTAACTTCGATCATGTGTGTAGTACTAAGTGTAGGCTAA
TACATATACCAGATGGATAAA
Found at i:60925276 original size:16 final size:16
Alignment explanation
Indices: 60925255--60925286 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
60925245 AGAATGGAGT
60925255 AAGTGAAATTATGTAA
1 AAGTGAAATTATGTAA
*
60925271 AAGTGAAATTTTGTAA
1 AAGTGAAATTATGTAA
60925287 TAAAACAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.19, T:0.34
Consensus pattern (16 bp):
AAGTGAAATTATGTAA
Found at i:60928561 original size:15 final size:15
Alignment explanation
Indices: 60928541--60928579 Score: 53
Period size: 15 Copynumber: 2.6 Consensus size: 15
60928531 TATGATATTG
60928541 TATCTTGGATTTC-C
1 TATCTTGGATTTCTC
*
60928555 TTATCTTTGATTTCTC
1 -TATCTTGGATTTCTC
60928571 TATCTTGGA
1 TATCTTGGA
60928580 GATCTTGGTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
15 20 0.95
16 1 0.05
ACGTcount: A:0.15, C:0.18, G:0.13, T:0.54
Consensus pattern (15 bp):
TATCTTGGATTTCTC
Found at i:60935048 original size:28 final size:28
Alignment explanation
Indices: 60934951--60935064 Score: 119
Period size: 27 Copynumber: 4.2 Consensus size: 28
60934941 AGCATGGCTG
* * *
60934951 CCAG-AACAGATA-TTGTGACAGAGTCA
1 CCAGAAACAGATATTTGTGGCATAGCCA
* * *
60934977 CCAGATACAGATA-TTGTGGTAGAGCCA
1 CCAGAAACAGATATTTGTGGCATAGCCA
*
60935004 CCAG-AACAGATATTTGTGGCGTAGCCA
1 CCAGAAACAGATATTTGTGGCATAGCCA
* *
60935031 TCAGAAACAGATGTTTGTGGCATAGCCA
1 CCAGAAACAGATATTTGTGGCATAGCCA
60935059 CCAGAA
1 CCAGAA
60935065 CGCTTCCTCC
Statistics
Matches: 73, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
26 11 0.15
27 36 0.49
28 26 0.36
ACGTcount: A:0.34, C:0.20, G:0.25, T:0.21
Consensus pattern (28 bp):
CCAGAAACAGATATTTGTGGCATAGCCA
Found at i:60935061 original size:55 final size:53
Alignment explanation
Indices: 60934951--60935065 Score: 133
Period size: 54 Copynumber: 2.1 Consensus size: 53
60934941 AGCATGGCTG
* * *
60934951 CCAGAACAGATATTGTGACAGAGTCACCAGATACAGATATTGTGGTAGAGCCA
1 CCAGAACAGATATTGTGACAGAGCCACCAGAAACAGATATTGTGGCAGAGCCA
* * * *
60935004 CCAGAACAGATATTTGTGGC-GTAGCCATCAGAAACAGATGTTTGTGGCATAGCCA
1 CCAGAACAGATA-TTGTGACAG-AGCCACCAGAAACAGAT-ATTGTGGCAGAGCCA
60935059 CCAGAAC
1 CCAGAAC
60935066 GCTTCCTCCA
Statistics
Matches: 52, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
53 13 0.25
54 20 0.38
55 19 0.37
ACGTcount: A:0.34, C:0.21, G:0.24, T:0.21
Consensus pattern (53 bp):
CCAGAACAGATATTGTGACAGAGCCACCAGAAACAGATATTGTGGCAGAGCCA
Found at i:60945056 original size:46 final size:46
Alignment explanation
Indices: 60945006--60945178 Score: 210
Period size: 46 Copynumber: 3.7 Consensus size: 46
60944996 TGGTTGAGCA
60945006 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
60945052 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
60945097 CATCCGAACTCGTTGATTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
60945145 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
60945179 GGGGCGGGTT
Statistics
Matches: 106, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 60 0.57
47 28 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.27, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:60945162 original size:93 final size:93
Alignment explanation
Indices: 60945003--60945173 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
60944993 GGATGGTTGA
*
60945003 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGT
60945068 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* *
60945096 GCATCCGAACTCGTTGATTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGT
60945161 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
60945174 ACTTAGGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:60947948 original size:27 final size:26
Alignment explanation
Indices: 60947917--60947978 Score: 70
Period size: 26 Copynumber: 2.3 Consensus size: 26
60947907 ATTTACTAAA
60947917 ATACCCCTAAGTATGAAAATTACCATT
1 ATACCCCTAAGTAT-AAAATTACCATT
* * * * *
60947944 TTACCCTTAGGTGTAAACTTACCATT
1 ATACCCCTAAGTATAAAATTACCATT
60947970 ATACCCCTA
1 ATACCCCTA
60947979 GGGTTAATTT
Statistics
Matches: 28, Mismatches: 7, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
26 18 0.64
27 10 0.36
ACGTcount: A:0.34, C:0.26, G:0.08, T:0.32
Consensus pattern (26 bp):
ATACCCCTAAGTATAAAATTACCATT
Found at i:60948155 original size:27 final size:26
Alignment explanation
Indices: 60948083--60948196 Score: 129
Period size: 27 Copynumber: 4.2 Consensus size: 26
60948073 AGAGGAAGCA
*
60948083 TTCTGGTGGCTATGCCACAAATATCTAT
1 TTCTGGTGGCTATGCCAC-AATATCT-G
*
60948111 TTCTGGTAGCTATGCCACAAATATCTG
1 TTCTGGTGGCTATGCCAC-AATATCTG
* *
60948138 TTCTGGTGGCTCTACCACAATATCTG
1 TTCTGGTGGCTATGCCACAATATCTG
* * *
60948164 TATCTGGTGACTCTGTCACAATATCTG
1 T-TCTGGTGGCTATGCCACAATATCTG
60948191 TTCTGG
1 TTCTGG
60948197 CAGCCATGCT
Statistics
Matches: 77, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
26 14 0.18
27 38 0.49
28 25 0.32
ACGTcount: A:0.22, C:0.23, G:0.19, T:0.36
Consensus pattern (26 bp):
TTCTGGTGGCTATGCCACAATATCTG
Found at i:60948184 original size:54 final size:54
Alignment explanation
Indices: 60948083--60948196 Score: 142
Period size: 54 Copynumber: 2.1 Consensus size: 54
60948073 AGAGGAAGCA
* *
60948083 TTCTGGTGGCTATGCCACAAATATCTATTTCTGGTAGCTATGCCACAAATATCTG
1 TTCTGGTGGCTATACCACAAATATCTATATCTGGTAGCTATGCCAC-AATATCTG
* * * *
60948138 TTCTGGTGGCTCTACCAC-AATATCTGTATCTGGT-GACTCTGTCACAATATCTG
1 TTCTGGTGGCTATACCACAAATATCTATATCTGGTAG-CTATGCCACAATATCTG
60948191 TTCTGG
1 TTCTGG
60948197 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 6, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
53 15 0.29
54 21 0.40
55 16 0.31
ACGTcount: A:0.22, C:0.23, G:0.19, T:0.36
Consensus pattern (54 bp):
TTCTGGTGGCTATACCACAAATATCTATATCTGGTAGCTATGCCACAATATCTG
Found at i:60950015 original size:4 final size:4
Alignment explanation
Indices: 60950006--60950030 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
60949996 TTACTATCAA
60950006 TATG TATG TATG TATG TATG TATG T
1 TATG TATG TATG TATG TATG TATG T
60950031 GTTTTTTTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.24, C:0.00, G:0.24, T:0.52
Consensus pattern (4 bp):
TATG
Found at i:60951057 original size:17 final size:16
Alignment explanation
Indices: 60951031--60951071 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 16
60951021 AATAATGTTT
60951031 AAATAGAAATAAAAGTAA
1 AAATA-AAATAAAAGT-A
*
60951049 AAATAAAATAATAGTA
1 AAATAAAATAAAAGTA
60951065 AAATAAA
1 AAATAAA
60951072 CGGACTCAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 8 0.36
17 9 0.41
18 5 0.23
ACGTcount: A:0.73, C:0.00, G:0.07, T:0.20
Consensus pattern (16 bp):
AAATAAAATAAAAGTA
Found at i:60952473 original size:15 final size:15
Alignment explanation
Indices: 60952453--60952486 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
60952443 ACAGAGAACT
*
60952453 ATAATAGTAATAATA
1 ATAATAGAAATAATA
*
60952468 ATAATAGAAATAATC
1 ATAATAGAAATAATA
60952483 ATAA
1 ATAA
60952487 AAATGCTAAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.62, C:0.03, G:0.06, T:0.29
Consensus pattern (15 bp):
ATAATAGAAATAATA
Found at i:60953133 original size:13 final size:13
Alignment explanation
Indices: 60953115--60953139 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
60953105 GGTGCACATG
60953115 GTCGTGTCGCACC
1 GTCGTGTCGCACC
60953128 GTCGTGTCGCAC
1 GTCGTGTCGCAC
60953140 GCCCGTGTGC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.36, G:0.32, T:0.24
Consensus pattern (13 bp):
GTCGTGTCGCACC
Found at i:60957467 original size:29 final size:29
Alignment explanation
Indices: 60957417--60957531 Score: 124
Period size: 29 Copynumber: 4.0 Consensus size: 29
60957407 GCATGACTAT
*
60957417 AATATGATTTGGGCCTAATGGGCCATATG
1 AATATGAATTGGGCCTAATGGGCCATATG
* * * *
60957446 AATGTGAATTGGGCCTAGTGGGCCTTAAG
1 AATATGAATTGGGCCTAATGGGCCATATG
* * *
60957475 AATATGAACTGGGCCAAATGGGCCATTTG
1 AATATGAATTGGGCCTAATGGGCCATATG
* * *
60957504 AATAAG-ATTGGGCCTAGTGGACCATATG
1 AATATGAATTGGGCCTAATGGGCCATATG
60957532 CATGTATGTA
Statistics
Matches: 68, Mismatches: 18, Indels: 1
0.78 0.21 0.01
Matches are distributed among these distances:
28 17 0.25
29 51 0.75
ACGTcount: A:0.29, C:0.15, G:0.30, T:0.27
Consensus pattern (29 bp):
AATATGAATTGGGCCTAATGGGCCATATG
Found at i:60963005 original size:40 final size:40
Alignment explanation
Indices: 60962961--60963228 Score: 455
Period size: 40 Copynumber: 6.7 Consensus size: 40
60962951 GCAAACACAT
* * *
60962961 TTGCCTTCGGGTCTTAACCCGGACATATCAACTTGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
60963001 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
* *
60963041 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCGTAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
60963081 TTGCCTTCGGGTCTTAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
* *
60963121 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAG
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
60963161 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
60963201 TTGCCTTCGGGTCTTAGCCCGGATATAT
1 TTGCCTTCGGGTCTTAGCCCGGATATAT
60963229 TCCAATGCTC
Statistics
Matches: 215, Mismatches: 13, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 215 1.00
ACGTcount: A:0.22, C:0.27, G:0.21, T:0.31
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
Found at i:60971757 original size:40 final size:40
Alignment explanation
Indices: 60971679--60971943 Score: 464
Period size: 40 Copynumber: 6.7 Consensus size: 40
60971669 CGCAACACAT
* *
60971679 TTGCCTTCGGGTCTTAACCCGGA-ATATCAACTTGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
* *
60971718 TTGCCTTCGGGTCTTAGCCCGGATATATCATCTTGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
60971758 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
60971798 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
60971838 TTGCCTTCGGGTC-TAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
60971877 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
60971917 TTGCCTTC-GGTCTTAGCCCGGATATAT
1 TTGCCTTCGGGTCTTAGCCCGGATATAT
60971944 TCCAATGCTC
Statistics
Matches: 218, Mismatches: 6, Indels: 4
0.96 0.03 0.02
Matches are distributed among these distances:
39 80 0.37
40 138 0.63
ACGTcount: A:0.22, C:0.27, G:0.20, T:0.31
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
Found at i:60971779 original size:79 final size:80
Alignment explanation
Indices: 60971679--60971943 Score: 464
Period size: 79 Copynumber: 3.4 Consensus size: 80
60971669 CGCAACACAT
* *
60971679 TTGCCTTCGGGTCTTAACCCGGA-ATATCAACTTGCATAATTGCCTTCGGGTCTTAGCCCGGATA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGATA
* *
60971743 TATCATCTTGCATAA
66 TATCAACTCGCATAA
*
60971758 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGATA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGATA
60971823 TATCAACTCGCATAA
66 TATCAACTCGCATAA
60971838 TTGCCTTCGGGTC-TAGCCCGGATATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGATA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGATA
60971902 TATCAACTCGCATAA
66 TATCAACTCGCATAA
60971917 TTGCCTTC-GGTCTTAGCCCGGATATAT
1 TTGCCTTCGGGTCTTAGCCCGGATATAT
60971944 TCCAATGCTC
Statistics
Matches: 179, Mismatches: 5, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
78 4 0.02
79 109 0.61
80 66 0.37
ACGTcount: A:0.22, C:0.27, G:0.20, T:0.31
Consensus pattern (80 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGATA
TATCAACTCGCATAA
Found at i:60971895 original size:119 final size:120
Alignment explanation
Indices: 60971679--60971943 Score: 464
Period size: 119 Copynumber: 2.2 Consensus size: 120
60971669 CGCAACACAT
* *
60971679 TTGCCTTCGGGTCTTAACCCGGA-ATATCAACTTGCATAATTGCCTTCGGGTCTTAGCCCGGATA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGATA
* *
60971743 TATCATCTTGCATAATTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
66 TATCAACTCGCATAATTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
60971798 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAATTGCCTTCGGGTC-TAGCCCGGATA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGATA
*
60971862 TATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
66 TATCAACTCGCATAATTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
60971917 TTGCCTTC-GGTCTTAGCCCGGATATAT
1 TTGCCTTCGGGTCTTAGCCCGGATATAT
60971944 TCCAATGCTC
Statistics
Matches: 140, Mismatches: 5, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
118 19 0.14
119 93 0.66
120 28 0.20
ACGTcount: A:0.22, C:0.27, G:0.20, T:0.31
Consensus pattern (120 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGATA
TATCAACTCGCATAATTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
Found at i:60979950 original size:27 final size:27
Alignment explanation
Indices: 60979886--60980062 Score: 189
Period size: 27 Copynumber: 6.6 Consensus size: 27
60979876 TAAATTGTAC
60979886 AGCACTAAGTGTGCG-ATTCGACTATGT
1 AGCACTAAGTGTGCGAATT-GACTATGT
* *
60979913 -GCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
60979938 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGAATTGACTATGT
* *
60979966 GGCACTAAGTGTGCGAGTCTGACTATGT
1 AGCACTAAGTGTGCGAAT-TGACTATGT
* * *
60979994 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
60980021 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
60980048 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
60980063 GGCTCAATAT
Statistics
Matches: 128, Mismatches: 17, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
26 20 0.16
27 85 0.66
28 23 0.18
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.28
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAATTGACTATGT
Found at i:60980002 original size:82 final size:80
Alignment explanation
Indices: 60979887--60980041 Score: 222
Period size: 82 Copynumber: 1.9 Consensus size: 80
60979877 AAATTGTACA
* *
60979887 GCACTAAGTGTGCGATTCGACTATGTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTGT
1 GCACTAAGTGTGCGAGTCGACTATGTGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTGT
60979951 GCGAATTGACCATGCG
65 GCGAATTGACCATGCG
** *
60979967 GCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGAGTC-GACTATGT-GCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
60980032 TGCGAGTTGA
64 TGCGAATTGA
60980042 TTATATAGCA
Statistics
Matches: 66, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
80 17 0.26
81 8 0.12
82 40 0.61
83 1 0.02
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (80 bp):
GCACTAAGTGTGCGAGTCGACTATGTGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGTG
CGAATTGACCATGCG
Found at i:60980009 original size:55 final size:53
Alignment explanation
Indices: 60979886--60980062 Score: 187
Period size: 55 Copynumber: 3.3 Consensus size: 53
60979876 TAAATTGTAC
* **
60979886 AGCACTAAGTGTGCG-ATTCGACTATGTGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGAATT-GACTATGAGCACTAAGTGTGCGAGTTGAATATGT
* * *
60979938 ATGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTCTGACTATGT
1 A-GCACTAAGTGTGCGAATTGACTATG-AGCACTAAGTGTGCGAGT-TGAATATGT
* * * * *
60979994 AGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAATTGACTATG-AGCACTAAGTGTGCGAGTTGAATATGT
*
60980048 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
60980063 GGCTCAATAT
Statistics
Matches: 106, Mismatches: 14, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
52 1 0.01
53 20 0.19
54 39 0.37
55 45 0.42
56 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.28
Consensus pattern (53 bp):
AGCACTAAGTGTGCGAATTGACTATGAGCACTAAGTGTGCGAGTTGAATATGT
Found at i:60980053 original size:82 final size:80
Alignment explanation
Indices: 60979883--60980062 Score: 218
Period size: 82 Copynumber: 2.2 Consensus size: 80
60979873 GATTAAATTG
* *
60979883 TACAGCACTAAGTGTGCGATTCGACTATGTGCACTAAGTGTGCGAAATGAATATGATGCACTAAG
1 TACAGCACTAAGTGTGCGAGTCGACTATGTGCACTAAGTGTGCGAAATGAATACGATGCACTAAG
60979948 TGTGCGAATTGACCA
66 TGTGCGAATTGACCA
* * ** *
60979963 TGCGGCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGAGTC-GACTATGT-GCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
60980027 AAGTGTGCGAGTTGATTA
63 AAGTGTGCGAATTGACCA
* *
60980045 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
60980063 GGCTCAATAT
Statistics
Matches: 83, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
80 19 0.23
81 9 0.11
82 55 0.66
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (80 bp):
TACAGCACTAAGTGTGCGAGTCGACTATGTGCACTAAGTGTGCGAAATGAATACGATGCACTAAG
TGTGCGAATTGACCA
Found at i:60980073 original size:27 final size:27
Alignment explanation
Indices: 60979967--60980073 Score: 79
Period size: 27 Copynumber: 3.9 Consensus size: 27
60979957 TGACCATGCG
* * *
60979967 GCACTAAGTGTGCGAGTCTGACTATGTA
1 GCACTAAGTGTGCGAG-CTCAATATATA
** * * **
60979995 GCACTAAGTGTGCGATTTGATTACGTA
1 GCACTAAGTGTGCGAGCTCAATATATA
* * *
60980022 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGAGCTCAATATATA
* *
60980049 GCACTGAGTGTGCGGGCTCAATATA
1 GCACTAAGTGTGCGAGCTCAATATA
60980074 CATTCGTGAA
Statistics
Matches: 67, Mismatches: 12, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
27 52 0.78
28 15 0.22
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (27 bp):
GCACTAAGTGTGCGAGCTCAATATATA
Found at i:60984139 original size:40 final size:40
Alignment explanation
Indices: 60984091--60984317 Score: 384
Period size: 40 Copynumber: 5.7 Consensus size: 40
60984081 GCAAACACAT
* * *
60984091 TTGCCTTCGGGTCTTAACCCGGACATATCAACTTGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
60984131 TTGCCTTCGGGTCTTAG-CCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
* *
60984170 TTTCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
60984210 TTGCCTTCGGGTCTTAGCCTGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
60984250 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
60984290 TTGCCTTCGGGTCTTAGCCCGGATATAT
1 TTGCCTTCGGGTCTTAGCCCGGATATAT
60984318 TCCAATGCTC
Statistics
Matches: 175, Mismatches: 11, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
39 34 0.19
40 141 0.81
ACGTcount: A:0.22, C:0.26, G:0.20, T:0.32
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
Found at i:60989997 original size:47 final size:47
Alignment explanation
Indices: 60989616--60989989 Score: 631
Period size: 47 Copynumber: 8.0 Consensus size: 47
60989606 TTAGGATTTT
** * *
60989616 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
60989663 ATGTGATGAATGTGAACATGCATATATATGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
60989710 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
60989757 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
60989804 ATGTGATGAATGTGAACATGCATATATATGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
60989851 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
60989898 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
60989945 ATGTGATGAATATGAACATGCATATATGTGGTAAAGCCGAATGGC
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGC
60989990 TAGTGTGAAA
Statistics
Matches: 308, Mismatches: 19, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 308 1.00
ACGTcount: A:0.34, C:0.12, G:0.28, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:60990334 original size:37 final size:37
Alignment explanation
Indices: 60990152--60990333 Score: 303
Period size: 37 Copynumber: 4.9 Consensus size: 37
60990142 GGAAATATAT
60990152 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
60990189 TCCGGGTAAGACCCGATGACTACATGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
60990226 TCCGGGTAAGACCCGATGACTACATGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
60990263 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
60990300 TCCAGGTAAGACCCGA-GAACTTCGTGTGGAGATT
1 TCCGGGTAAGACCCGATG-ACTACGTGTGGAGATT
60990334 TCGTCTGAGC
Statistics
Matches: 139, Mismatches: 5, Indels: 2
0.95 0.03 0.01
Matches are distributed among these distances:
36 1 0.01
37 138 0.99
ACGTcount: A:0.25, C:0.19, G:0.31, T:0.25
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:60999770 original size:16 final size:17
Alignment explanation
Indices: 60999729--60999770 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
60999719 ATTAAGAAAT
*
60999729 AAAATTAAAAATCTAAA
1 AAAAATAAAAATCTAAA
60999746 AAGAAATAAAAA-CTAAA
1 AA-AAATAAAAATCTAAA
*
60999763 GAAAATAA
1 AAAAATAA
60999771 CTACCCCTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
16 6 0.27
17 8 0.36
18 8 0.36
ACGTcount: A:0.74, C:0.05, G:0.05, T:0.17
Consensus pattern (17 bp):
AAAAATAAAAATCTAAA
Found at i:61008234 original size:53 final size:53
Alignment explanation
Indices: 61008057--61008261 Score: 187
Period size: 53 Copynumber: 3.8 Consensus size: 53
61008047 ATTAGGGTTT
* * *
61008057 AAGGATACCAAGTAAGACCATGCCAAGGCATGG-AATTGGTAAGTTTTACAAGGC
1 AAGGATACCAAGTAAGACCATGCCAAGACATGGCAA-TGGTAAG-TTCATAAGGC
* * * * * * * * * *
61008111 AAGGAAATCATGTAGGACCAAGTCAAGACATGGCATTGATAAACTACGATAAGGC
1 AAGGATACCAAGTAAGACCATGCCAAGACATGGCAATGGT-AAGTTC-ATAAGGC
* * * *
61008166 AAAGATCCCAAGTAAGACCATGCCAAGGCATGGCAATGGTGAGTTCATAAGGC
1 AAGGATACCAAGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGC
* * *
61008219 AAGGATACCACGTAAGACCATGTCAAGACATGGTAATGGTAAG
1 AAGGATACCAAGTAAGACCATGCCAAGACATGGCAATGGTAAG
61008262 CTTAAAAAGG
Statistics
Matches: 114, Mismatches: 34, Indels: 7
0.74 0.22 0.05
Matches are distributed among these distances:
53 43 0.38
54 33 0.29
55 38 0.33
ACGTcount: A:0.39, C:0.18, G:0.25, T:0.19
Consensus pattern (53 bp):
AAGGATACCAAGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGC
Found at i:61027363 original size:16 final size:18
Alignment explanation
Indices: 61027328--61027364 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
61027318 AATGATCCCT
*
61027328 ATGCAATTTCTAATCTAA
1 ATGCAATTTCTAACCTAA
61027346 ATGCAATTT-T-ACCTAA
1 ATGCAATTTCTAACCTAA
61027362 ATG
1 ATG
61027365 TACGAATGAG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
16 8 0.44
17 1 0.06
18 9 0.50
ACGTcount: A:0.38, C:0.16, G:0.08, T:0.38
Consensus pattern (18 bp):
ATGCAATTTCTAACCTAA
Found at i:61028049 original size:36 final size:36
Alignment explanation
Indices: 61028002--61028072 Score: 133
Period size: 36 Copynumber: 2.0 Consensus size: 36
61027992 TAAACTCTAT
*
61028002 TCAGTTCAGCAACCTTTTGGATCTATTCTAACTGAC
1 TCAGTTCAGCAACCTTCTGGATCTATTCTAACTGAC
61028038 TCAGTTCAGCAACCTTCTGGATCTATTCTAACTGA
1 TCAGTTCAGCAACCTTCTGGATCTATTCTAACTGA
61028073 GGTGCTTTAC
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.25, C:0.25, G:0.14, T:0.35
Consensus pattern (36 bp):
TCAGTTCAGCAACCTTCTGGATCTATTCTAACTGAC
Found at i:61035816 original size:40 final size:40
Alignment explanation
Indices: 61035739--61035954 Score: 330
Period size: 40 Copynumber: 5.4 Consensus size: 40
61035729 AAACCAAGTA
* *
61035739 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
61035778 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
61035818 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
61035858 CCTTCGGGACTTAGCCCGGAGATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
61035898 CCTTCGGGGCTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
61035938 CCTTCGGGACTTAGCCC
1 CCTTCGGGACTTAGCCC
61035955 AGTTATCATC
Statistics
Matches: 165, Mismatches: 9, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
39 15 0.09
40 150 0.91
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:61046872 original size:18 final size:18
Alignment explanation
Indices: 61046833--61046875 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
61046823 GAACGGAAAT
* *
61046833 AAGAAAATAGAAAGAAGC
1 AAGAAAAAAGAAAGAAGA
61046851 AAGAAAAAAGAAAG-AGAA
1 AAGAAAAAAGAAAGAAG-A
61046869 AAGAAAA
1 AAGAAAA
61046876 CGTGCTAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
17 2 0.09
18 20 0.91
ACGTcount: A:0.74, C:0.02, G:0.21, T:0.02
Consensus pattern (18 bp):
AAGAAAAAAGAAAGAAGA
Found at i:61049462 original size:40 final size:40
Alignment explanation
Indices: 61049407--61049564 Score: 262
Period size: 40 Copynumber: 4.0 Consensus size: 40
61049397 GGAAAAAAAA
*
61049407 TATAACCGGGTTAAGTCCCGAAGACATTCGTGCGGGTTAT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
*
61049447 TATAACCGGGTTAAGTCCCTAAGGCATTCGTGCGGGTTAT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
* *
61049487 TATAACCAGGTTAAGTCCCGAAGGCATTCGTACGGGTTAT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
* *
61049527 TATAACCGGGTTAAGTCCCGAAGGCATTTGTGCTGGTT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTT
61049565 GTTGCATCCG
Statistics
Matches: 109, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 109 1.00
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.29
Consensus pattern (40 bp):
TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
Found at i:61049588 original size:80 final size:80
Alignment explanation
Indices: 61049422--61049590 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 80
61049412 CCGGGTTAAG
* * *
61049422 TCCCGAAGACATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCTAAGGCATTCGTGCGGGTTAT
1 TCCCGAAGGCATTCGTACGGGTTATTATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
* ** *
61049487 TATAACCAGGTTAAG
66 TACAACCAGGCCAAA
* * *
61049502 TCCCGAAGGCATTCGTACGGGTTATTATAACCGGGTTAAGTCCCGAAGGCATTTGTGCTGGTTGT
1 TCCCGAAGGCATTCGTACGGGTTATTATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
* *
61049567 TGCATCC-GAGCCAAA
66 TACAACCAG-GCCAAA
*
61049582 TTCCGAAGG
1 TCCCGAAGG
61049591 TATTTATGTT
Statistics
Matches: 75, Mismatches: 13, Indels: 2
0.83 0.14 0.02
Matches are distributed among these distances:
79 1 0.01
80 74 0.99
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (80 bp):
TCCCGAAGGCATTCGTACGGGTTATTATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
TACAACCAGGCCAAA
Found at i:61053887 original size:25 final size:25
Alignment explanation
Indices: 61053859--61053911 Score: 97
Period size: 25 Copynumber: 2.1 Consensus size: 25
61053849 AATTTGATAT
*
61053859 TTCAGCAGAGAATGCATTGTTGAGA
1 TTCAGCAGAGAAGGCATTGTTGAGA
61053884 TTCAGCAGAGAAGGCATTGTTGAGA
1 TTCAGCAGAGAAGGCATTGTTGAGA
61053909 TTC
1 TTC
61053912 GCAATAAATT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.30, C:0.13, G:0.28, T:0.28
Consensus pattern (25 bp):
TTCAGCAGAGAAGGCATTGTTGAGA
Found at i:61054787 original size:59 final size:60
Alignment explanation
Indices: 61054613--61054792 Score: 213
Period size: 59 Copynumber: 2.9 Consensus size: 60
61054603 ATATTATTTT
* * * * *
61054613 TTAATATTATATATTATGATTTTTATT-CATTCATATTTTAATAATAATTATATTAAGAATGTTA
1 TTAA-ATT-TATATTATTATCTTTATTAAATT-ATA-TTTAATAATAATTATATTAA-AATATGA
61054677 TTAAATTTATATTATTATCTTTATTAAATTATATTTAATAATAATTATATTAAAATATGA
1 TTAAATTTATATTATTATCTTTATTAAATTATATTTAATAATAATTATATTAAAATATGA
* *
61054737 TTAAA-TTAT-TTATTATTTATTATTAAATTATATTTAATAATAATTCTATTATAAAT
1 TTAAATTTATATTATTATCT-TTATTAAATTATATTTAATAATAATTATATTA-AAAT
61054793 TAATAACAAT
Statistics
Matches: 106, Mismatches: 7, Indels: 10
0.86 0.06 0.08
Matches are distributed among these distances:
58 8 0.08
59 35 0.33
60 14 0.13
61 20 0.19
62 19 0.18
63 6 0.06
64 4 0.04
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.53
Consensus pattern (60 bp):
TTAAATTTATATTATTATCTTTATTAAATTATATTTAATAATAATTATATTAAAATATGA
Found at i:61055005 original size:16 final size:16
Alignment explanation
Indices: 61054952--61054997 Score: 74
Period size: 16 Copynumber: 2.9 Consensus size: 16
61054942 TGAATTACTG
61054952 ATTACAACTCTATTCA
1 ATTACAACTCTATTCA
*
61054968 ATTACAGCTCTATTCA
1 ATTACAACTCTATTCA
*
61054984 ATTACAACCCTATT
1 ATTACAACTCTATT
61054998 TCATTACAGT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 27 1.00
ACGTcount: A:0.35, C:0.26, G:0.02, T:0.37
Consensus pattern (16 bp):
ATTACAACTCTATTCA
Found at i:61073626 original size:46 final size:46
Alignment explanation
Indices: 61073576--61073751 Score: 187
Period size: 46 Copynumber: 3.8 Consensus size: 46
61073566 TGGTTGAGCA
* *
61073576 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * * *
61073622 TCCGAACTCGTTAAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* *
61073669 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * *
61073715 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
61073752 GCGGGTTACA
Statistics
Matches: 106, Mismatches: 17, Indels: 14
0.77 0.12 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 61 0.58
47 28 0.26
48 3 0.03
50 5 0.05
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:61073732 original size:93 final size:93
Alignment explanation
Indices: 61073573--61073744 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
61073563 GGATGGTTGA
* * * *
61073573 GCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTAAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCGAACTCGTTAAGT
61073638 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
61073666 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCGAACTCGTTAAGT
61073731 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
61073745 CTTATGGGCG
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCGAACTCGTTAAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:61077303 original size:20 final size:20
Alignment explanation
Indices: 61077278--61077337 Score: 120
Period size: 20 Copynumber: 3.0 Consensus size: 20
61077268 AATTGCTATG
61077278 CTACCTAACCTATCTCTTAA
1 CTACCTAACCTATCTCTTAA
61077298 CTACCTAACCTATCTCTTAA
1 CTACCTAACCTATCTCTTAA
61077318 CTACCTAACCTATCTCTTAA
1 CTACCTAACCTATCTCTTAA
61077338 AGACTCTTCC
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 40 1.00
ACGTcount: A:0.30, C:0.35, G:0.00, T:0.35
Consensus pattern (20 bp):
CTACCTAACCTATCTCTTAA
Found at i:61079301 original size:16 final size:18
Alignment explanation
Indices: 61079266--61079303 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
61079256 ATCCTTATTT
61079266 AAATAAAATACAATAGTA
1 AAATAAAATACAATAGTA
61079284 AAATAAAATA-AA-AGTA
1 AAATAAAATACAATAGTA
61079300 AAAT
1 AAAT
61079304 CAATATAGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
16 8 0.40
17 2 0.10
18 10 0.50
ACGTcount: A:0.71, C:0.03, G:0.05, T:0.21
Consensus pattern (18 bp):
AAATAAAATACAATAGTA
Found at i:61092758 original size:11 final size:11
Alignment explanation
Indices: 61092742--61092766 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
61092732 GGTGGCGGAA
61092742 AATGATGTCAT
1 AATGATGTCAT
61092753 AATGATGTCAT
1 AATGATGTCAT
61092764 AAT
1 AAT
61092767 CTAAAAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.40, C:0.08, G:0.16, T:0.36
Consensus pattern (11 bp):
AATGATGTCAT
Found at i:61096065 original size:48 final size:48
Alignment explanation
Indices: 61095989--61096122 Score: 153
Period size: 48 Copynumber: 2.8 Consensus size: 48
61095979 CACATAATAA
* * *
61095989 GATGCCAACGCCATATCCTAGATATGGTCTTACATGGGATCACCACA-C
1 GATGCCAATGCCATATCCCAGACATGGTCTTACATGGGATC-CCACATC
* * * *
61096037 GATGCCAATACCATGTCCCAGACATGGTCTTACATGGGATCTCATATGTC
1 GATGCCAATGCCATATCCCAGACATGGTCTTACATGGGATCCCACA--TC
* *
61096087 AATGCCAATGCCATACCCCAGACATGGTCTTACATG
1 GATGCCAATGCCATATCCCAGACATGGTCTTACATG
61096123 ATAACATACC
Statistics
Matches: 72, Mismatches: 11, Indels: 4
0.83 0.13 0.05
Matches are distributed among these distances:
47 3 0.04
48 36 0.50
50 33 0.46
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (48 bp):
GATGCCAATGCCATATCCCAGACATGGTCTTACATGGGATCCCACATC
Found at i:61098528 original size:27 final size:27
Alignment explanation
Indices: 61098488--61098561 Score: 103
Period size: 27 Copynumber: 2.7 Consensus size: 27
61098478 ATACGCCATT
61098488 AAGGCGATCCATTCAGAGTACACCACA
1 AAGGCGATCCATTCAGAGTACACCACA
* * *
61098515 ATGGCGATCCATTCAGAGTACACTATA
1 AAGGCGATCCATTCAGAGTACACCACA
* *
61098542 AAGGTGATCTATTCAGAGTA
1 AAGGCGATCCATTCAGAGTA
61098562 TGTCATGGCC
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 41 1.00
ACGTcount: A:0.35, C:0.22, G:0.20, T:0.23
Consensus pattern (27 bp):
AAGGCGATCCATTCAGAGTACACCACA
Found at i:61100106 original size:8 final size:8
Alignment explanation
Indices: 61100072--61100168 Score: 56
Period size: 8 Copynumber: 11.8 Consensus size: 8
61100062 AATTAGAAAA
61100072 AAAATATT
1 AAAATATT
61100080 -AAATATT
1 AAAATATT
* *
61100087 AAAAAATA
1 AAAATATT
61100095 AAAATATT
1 AAAATATT
61100103 AAAATTATAT
1 AAAA-TAT-T
**
61100113 AACCTTATT
1 AA-AATATT
*
61100122 AAAATTATA
1 AAAA-TATT
61100131 AAAATA-T
1 AAAATATT
61100138 AAAATATT
1 AAAATATT
*
61100146 ATAAAAATAT
1 A-AAATAT-T
61100156 AAAA-ATT
1 AAAATATT
*
61100163 CAAATA
1 AAAATA
61100169 AGTTCTAAAA
Statistics
Matches: 68, Mismatches: 12, Indels: 18
0.69 0.12 0.18
Matches are distributed among these distances:
7 17 0.25
8 22 0.32
9 21 0.31
10 8 0.12
ACGTcount: A:0.64, C:0.03, G:0.00, T:0.33
Consensus pattern (8 bp):
AAAATATT
Found at i:61100125 original size:27 final size:27
Alignment explanation
Indices: 61100092--61100162 Score: 72
Period size: 27 Copynumber: 2.6 Consensus size: 27
61100082 ATATTAAAAA
* *
61100092 ATAAAAATATTAAAATTATATAACCTT
1 ATAAAAATATTAAAATTATAAAACATT
* * *
61100119 ATTAAAAT-TATAAAAATATAAAATATT
1 ATAAAAATAT-TAAAATTATAAAACATT
*
61100146 ATAAAAATATAAAAATT
1 ATAAAAATATTAAAATT
61100163 CAAATAAGTT
Statistics
Matches: 34, Mismatches: 8, Indels: 4
0.74 0.17 0.09
Matches are distributed among these distances:
26 1 0.03
27 32 0.94
28 1 0.03
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.35
Consensus pattern (27 bp):
ATAAAAATATTAAAATTATAAAACATT
Found at i:61100134 original size:9 final size:9
Alignment explanation
Indices: 61100092--61100316 Score: 77
Period size: 10 Copynumber: 23.8 Consensus size: 9
61100082 ATATTAAAAA
61100092 ATAAAAA-T
1 ATAAAAATT
*
61100100 ATTAAAATT
1 ATAAAAATT
**
61100109 ATATAACCTT
1 ATA-AAAATT
*
61100119 ATTAAAATT
1 ATAAAAATT
61100128 ATAAAAA-T
1 ATAAAAATT
61100136 ATAAAATATT
1 ATAAAA-ATT
61100146 ATAAAAA-T
1 ATAAAAATT
61100154 ATAAAAATT
1 ATAAAAATT
*
61100163 CA-AATAAGTT
1 -ATAA-AAATT
*
61100173 CTAAAAAATT
1 AT-AAAAATT
*
61100183 ATAAAAAGT
1 ATAAAAATT
*
61100192 A-ATGAAATT
1 ATA-AAAATT
61100201 AATAAAACTTATT
1 -ATAAAA---ATT
* *
61100214 TTAAATATTT
1 ATAAA-AATT
* *
61100224 AAAAAAACGT
1 ATAAAAA-TT
* *
61100234 ATTAGAATT
1 ATAAAAATT
* *
61100243 CTTAAAAATA
1 -ATAAAAATT
61100253 ATAAAAATGGT
1 ATAAAAAT--T
61100264 A-AAAAACTT
1 ATAAAAA-TT
61100273 ATAAAAA-T
1 ATAAAAATT
*
61100281 ATTAAAATT
1 ATAAAAATT
*
61100290 GATATAAACTT
1 -ATA-AAAATT
61100301 ATAAAAATT
1 ATAAAAATT
61100310 ATAAAAA
1 ATAAAAA
61100317 AATCATAAAA
Statistics
Matches: 156, Mismatches: 36, Indels: 49
0.65 0.15 0.20
Matches are distributed among these distances:
8 29 0.19
9 53 0.34
10 56 0.36
11 10 0.06
12 4 0.03
13 4 0.03
ACGTcount: A:0.60, C:0.04, G:0.04, T:0.33
Consensus pattern (9 bp):
ATAAAAATT
Found at i:61100148 original size:18 final size:18
Alignment explanation
Indices: 61100125--61100159 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
61100115 CCTTATTAAA
61100125 ATTATAAAAATATAAAAT
1 ATTATAAAAATATAAAAT
61100143 ATTATAAAAATATAAAA
1 ATTATAAAAATATAAAA
61100160 ATTCAAATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (18 bp):
ATTATAAAAATATAAAAT
Found at i:61100156 original size:43 final size:42
Alignment explanation
Indices: 61100076--61100157 Score: 114
Period size: 43 Copynumber: 1.9 Consensus size: 42
61100066 AGAAAAAAAA
*
61100076 TATTAAATATTAAAAAATAAAAATATTAAAATTATATAACCT
1 TATTAAATATTAAAAAATAAAAATATTAAAATAATATAACCT
61100118 TATTAAA-ATTATAAAAATATAAAATATTATAAA-AATATAA
1 TATTAAATATTA-AAAAATA-AAAATATTA-AAATAATATAA
61100158 AAATTCAAAT
Statistics
Matches: 36, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
41 4 0.11
42 14 0.39
43 15 0.42
44 3 0.08
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.35
Consensus pattern (42 bp):
TATTAAATATTAAAAAATAAAAATATTAAAATAATATAACCT
Found at i:61100288 original size:28 final size:29
Alignment explanation
Indices: 61100245--61100316 Score: 85
Period size: 28 Copynumber: 2.5 Consensus size: 29
61100235 TTAGAATTCT
61100245 TAAAAATAATAAAAATGG-TAAAAAACTTA
1 TAAAAATAATAAAAATGGAT-AAAAACTTA
* * *
61100274 TAAAAAT-ATTAAAATTGATATAAACTTA
1 TAAAAATAATAAAAATGGATAAAAACTTA
*
61100302 TAAAAATTATAAAAA
1 TAAAAATAATAAAAA
61100317 AATCATAAAA
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
28 23 0.62
29 14 0.38
ACGTcount: A:0.64, C:0.03, G:0.04, T:0.29
Consensus pattern (29 bp):
TAAAAATAATAAAAATGGATAAAAACTTA
Found at i:61100295 original size:20 final size:19
Alignment explanation
Indices: 61100272--61100327 Score: 58
Period size: 20 Copynumber: 2.8 Consensus size: 19
61100262 GTAAAAAACT
*
61100272 TATAAAAATATTAAAATTGA
1 TATAAAAATATAAAAATT-A
**
61100292 TATAAACTTATAAAAATTA
1 TATAAAAATATAAAAATTA
*
61100311 TAAAAAAATCATAAAAA
1 TATAAAAAT-ATAAAAA
61100328 CTTGAATTAG
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
19 7 0.24
20 22 0.76
ACGTcount: A:0.64, C:0.04, G:0.02, T:0.30
Consensus pattern (19 bp):
TATAAAAATATAAAAATTA
Found at i:61100324 original size:28 final size:28
Alignment explanation
Indices: 61100267--61100325 Score: 68
Period size: 28 Copynumber: 2.1 Consensus size: 28
61100257 AAATGGTAAA
**
61100267 AAACTTATAAAAATATTAAAATTGATAT
1 AAACTTATAAAAATATTAAAATAAATAT
61100295 AAACTTATAAAAAT-TATAAAA-AAATCAT
1 AAACTTATAAAAATAT-TAAAATAAAT-AT
61100323 AAA
1 AAA
61100326 AACTTGAATT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
27 3 0.11
28 24 0.89
ACGTcount: A:0.63, C:0.05, G:0.02, T:0.31
Consensus pattern (28 bp):
AAACTTATAAAAATATTAAAATAAATAT
Found at i:61100892 original size:19 final size:18
Alignment explanation
Indices: 61100870--61100951 Score: 69
Period size: 19 Copynumber: 4.3 Consensus size: 18
61100860 TTTTTATTGA
61100870 TTTTATAATTCATTATAAT
1 TTTTATAATT-ATTATAAT
* *
61100889 TTTTATAATTTTTTTATAT
1 TTTTATAATTATTATA-AT
*
61100908 TTTTATAA-TATTTATAAA
1 TTTTATAATTA-TTATAAT
61100926 TTTTATAAGTT-TATATCAAT
1 TTTTATAA-TTAT-TAT-AAT
61100946 TTTTAT
1 TTTTAT
61100952 TTTTTCATAT
Statistics
Matches: 51, Mismatches: 6, Indels: 11
0.75 0.09 0.16
Matches are distributed among these distances:
18 15 0.29
19 27 0.53
20 9 0.18
ACGTcount: A:0.34, C:0.02, G:0.01, T:0.62
Consensus pattern (18 bp):
TTTTATAATTATTATAAT
Found at i:61100894 original size:9 final size:9
Alignment explanation
Indices: 61100870--61101004 Score: 84
Period size: 9 Copynumber: 15.0 Consensus size: 9
61100860 TTTTTATTGA
61100870 TTTTATAAT
1 TTTTATAAT
*
61100879 TCATTATAAT
1 T-TTTATAAT
61100889 TTTTATAAT
1 TTTTATAAT
*
61100898 TTTTTTATAT
1 TTTTATA-AT
61100908 TTTTATAAT
1 TTTTATAAT
* *
61100917 ATTTATAAA
1 TTTTATAAT
61100926 TTTTATAAGT
1 TTTTATAA-T
*
61100936 TTATATCAAT
1 TTTTAT-AAT
61100946 TTTTAT--T
1 TTTTATAAT
61100953 TTTTCAT-A-
1 TTTT-ATAAT
*
61100961 TTTAATAAT
1 TTTTATAAT
* *
61100970 TGTTATGAT
1 TTTTATAAT
*
61100979 TTTT-TATT
1 TTTTATAAT
*
61100987 TTTTAAAAT
1 TTTTATAAT
61100996 ATTTT-TAAT
1 -TTTTATAAT
61101005 CATTTTATGA
Statistics
Matches: 96, Mismatches: 20, Indels: 20
0.71 0.15 0.15
Matches are distributed among these distances:
7 7 0.07
8 12 0.12
9 44 0.46
10 31 0.32
11 2 0.02
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.63
Consensus pattern (9 bp):
TTTTATAAT
Found at i:61100901 original size:28 final size:27
Alignment explanation
Indices: 61100860--61100951 Score: 78
Period size: 28 Copynumber: 3.3 Consensus size: 27
61100850 CTAAATATTT
**
61100860 TTTTTATTGATTTTATAATTCATTATAA
1 TTTTTATAAATTTTATAATT-ATTATAA
* * *
61100888 TTTTTATAATTTTTTTATATTTTTATAA
1 TTTTTATAAATTTTATA-ATTATTATAA
*
61100916 TATTTATAAATTTTATAAGTT-TATATCAA
1 TTTTTATAAATTTTATAA-TTAT-TAT-AA
61100945 TTTTTAT
1 TTTTTAT
61100952 TTTTTCATAT
Statistics
Matches: 51, Mismatches: 9, Indels: 7
0.76 0.13 0.10
Matches are distributed among these distances:
27 2 0.04
28 38 0.75
29 11 0.22
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.63
Consensus pattern (27 bp):
TTTTTATAAATTTTATAATTATTATAA
Found at i:61101409 original size:30 final size:32
Alignment explanation
Indices: 61101373--61101442 Score: 83
Period size: 31 Copynumber: 2.3 Consensus size: 32
61101363 GTTTCAATTT
*
61101373 AGTCACTCAAC-TT-TTGAAAAATGACAAATC
1 AGTCACTCAACGTTATCGAAAAATGACAAATC
* *
61101403 AGTCACT-AACGTTATCGAAAAGTGACAAATT
1 AGTCACTCAACGTTATCGAAAAATGACAAATC
*
61101434 AGTGACTCA
1 AGTCACTCA
61101443 CTAACATTTT
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
29 3 0.09
30 9 0.27
31 20 0.61
32 1 0.03
ACGTcount: A:0.41, C:0.19, G:0.14, T:0.26
Consensus pattern (32 bp):
AGTCACTCAACGTTATCGAAAAATGACAAATC
Found at i:61108998 original size:37 final size:37
Alignment explanation
Indices: 61108939--61109084 Score: 247
Period size: 37 Copynumber: 3.9 Consensus size: 37
61108929 AGCTCAGACG
* *
61108939 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
61108976 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* *
61109013 TAATCTCCACATGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
61109050 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
61109085 ATATATTTCC
Statistics
Matches: 104, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 104 1.00
ACGTcount: A:0.26, C:0.31, G:0.19, T:0.24
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:61109301 original size:47 final size:47
Alignment explanation
Indices: 61109247--61109479 Score: 367
Period size: 47 Copynumber: 5.0 Consensus size: 47
61109237 TTTCACACTA
* * *
61109247 GCCATTCGGCTTTACCACATATATGCATGTTCATATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
* * * *
61109294 GCTATTCGGCCTTATCAGACATATGCATGCTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
61109341 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
61109388 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
* * **
61109435 GCCATTCGGCCTTATCTCATATATACACATTCACATTCATCACAT
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACAT
61109480 AAAATCCTAA
Statistics
Matches: 171, Mismatches: 15, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 171 1.00
ACGTcount: A:0.26, C:0.28, G:0.12, T:0.34
Consensus pattern (47 bp):
GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
Found at i:61109357 original size:22 final size:22
Alignment explanation
Indices: 61109332--61109450 Score: 66
Period size: 22 Copynumber: 5.1 Consensus size: 22
61109322 GCTCACATTC
61109332 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
61109354 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
61109378 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
* * *
61109401 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
61109425 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
61109448 ATC
1 ATC
61109451 TCATATATAC
Statistics
Matches: 71, Mismatches: 12, Indels: 28
0.64 0.11 0.25
Matches are distributed among these distances:
22 23 0.32
23 14 0.20
24 14 0.20
25 20 0.28
ACGTcount: A:0.24, C:0.29, G:0.13, T:0.34
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:61110467 original size:40 final size:40
Alignment explanation
Indices: 61110412--61110490 Score: 158
Period size: 40 Copynumber: 2.0 Consensus size: 40
61110402 ATCATATCTT
61110412 ATTAAATCAACTCATTATGTCCTATTATGATTGAATTTAA
1 ATTAAATCAACTCATTATGTCCTATTATGATTGAATTTAA
61110452 ATTAAATCAACTCATTATGTCCTATTATGATTGAATTTA
1 ATTAAATCAACTCATTATGTCCTATTATGATTGAATTTA
61110491 CTCAACGTTT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.37, C:0.13, G:0.08, T:0.43
Consensus pattern (40 bp):
ATTAAATCAACTCATTATGTCCTATTATGATTGAATTTAA
Found at i:61115509 original size:75 final size:75
Alignment explanation
Indices: 61115386--61115535 Score: 282
Period size: 75 Copynumber: 2.0 Consensus size: 75
61115376 ATTGAAAGAC
61115386 TAATATGTCATCTATCAAGTCCAATTGGGGAGATGCTTTGTCTTGAACATCGAAGCTTATGACTC
1 TAATATGTCATCTATCAAGTCCAATTGGGGAGATGCTTTGTCTTGAACATCGAAGCTTATGACTC
61115451 TAAGAAGATA
66 TAAGAAGATA
*
61115461 TAATATGTCATCTATCAAGTCCAATTGGGGAGATGCTTTGTCTTGAACATCGAAGCTTATGACTT
1 TAATATGTCATCTATCAAGTCCAATTGGGGAGATGCTTTGTCTTGAACATCGAAGCTTATGACTC
*
61115526 TGAGAAGATA
66 TAAGAAGATA
61115536 GAGACATAGA
Statistics
Matches: 73, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
75 73 1.00
ACGTcount: A:0.31, C:0.15, G:0.21, T:0.33
Consensus pattern (75 bp):
TAATATGTCATCTATCAAGTCCAATTGGGGAGATGCTTTGTCTTGAACATCGAAGCTTATGACTC
TAAGAAGATA
Found at i:61123479 original size:79 final size:81
Alignment explanation
Indices: 61123378--61123562 Score: 218
Period size: 79 Copynumber: 2.3 Consensus size: 81
61123368 GCTACTCGTT
* * *
61123378 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
61123441 GAATTTAGTAAC-TCGCA
64 GAATATAGTAACTTAGCA
* ** *
61123458 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGA
* *
61123522 ATATGGTCACTTAGCA
66 ATATAGTAACTTAGCA
61123538 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
61123563 CATCATTCAA
Statistics
Matches: 90, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
78 3 0.03
79 53 0.59
80 34 0.38
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGA
ATATAGTAACTTAGCA
Found at i:61123562 original size:40 final size:40
Alignment explanation
Indices: 61123359--61123562 Score: 220
Period size: 40 Copynumber: 5.1 Consensus size: 40
61123349 CGGAATTTAA
** *
61123359 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
61123399 CCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
61123439 CCGAATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
61123478 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
61123518 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
61123558 CCGGA
1 CCGGA
61123563 CATCATTCAA
Statistics
Matches: 137, Mismatches: 20, Indels: 14
0.80 0.12 0.08
Matches are distributed among these distances:
38 2 0.01
39 32 0.23
40 91 0.66
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:61132258 original size:48 final size:48
Alignment explanation
Indices: 61132189--61132807 Score: 1013
Period size: 48 Copynumber: 12.9 Consensus size: 48
61132179 TACAAGATAA
* *
61132189 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* **
61132237 ATATGTATTTGTGGTAAAGCCGAATGGCTAACATGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* * *
61132285 ATATATATATGTTGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
61132333 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
61132381 ATATGTATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTTTGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
61132429 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
61132477 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATTTGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
61132525 ATATGTATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTTTGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
61132573 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
**
61132621 ATATGTATATGTGGTAAAGCCGAATGGCTAACATGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
61132669 ATATATATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
61132717 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
61132765 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGT
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGT
61132808 GACAGCCGTA
Statistics
Matches: 530, Mismatches: 41, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 530 1.00
ACGTcount: A:0.36, C:0.07, G:0.26, T:0.32
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
Found at i:61134688 original size:40 final size:40
Alignment explanation
Indices: 61134630--61134966 Score: 489
Period size: 40 Copynumber: 8.4 Consensus size: 40
61134620 TGGATGATAA
61134630 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
61134670 CCGGGCTAAGTCCTGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
61134710 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
61134750 ACGGGCTAAGTCCCGATGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * * *
61134790 CCGGGCTAAGTCCCGAATGCTTTTGTGCTAGTGACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
61134830 CCGGGCTAAGTCCCGAAGGCATTTGTGCTA-TTGACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTT-ACTATAT
* *
61134870 CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * **
61134910 CCGGGCCAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
61134950 TC-GGCTAAATCCCGAAG
1 CCGGGCTAAGTCCCGAAG
61134967 ATGCTTGGGT
Statistics
Matches: 267, Mismatches: 28, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
39 13 0.05
40 252 0.94
41 2 0.01
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:61138683 original size:129 final size:128
Alignment explanation
Indices: 61138466--61138816 Score: 532
Period size: 129 Copynumber: 2.8 Consensus size: 128
61138456 AACTCACTTT
*
61138466 TCGCAATATGAGTTGATTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCA
1 TCGCAATATGAGTTGTTTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCA
61138531 ACTCACCTCTCGCAATATGAGTTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTC
66 ACTCACCTCTCGCAATATGAGTTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTC
61138594 TCGCAATATGAGTTGTTTTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTC
1 TCGCAATATGAGTTG-TTTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTC
61138659 AACTCACCTCTCGCAATATGAGTTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTC
65 AACTCACCTCTCGCAATATGAGTTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTC
* * * * * * * * *
61138723 TCGCAATATGA---GTATTTTCT-A-AACATAAACTAAAAATACCTCAGCGTGCCCCGAGGCTCG
1 TCGCAATATGAGTTGTTTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCA
* * *
61138783 ACTCACCCCTCACAATATGAGCTGATTTTTGAAA
66 ACTCACCTCTCGCAATATGAGTTGA-TTTTGAAA
61138817 CAAAAGGAAT
Statistics
Matches: 208, Mismatches: 13, Indels: 8
0.91 0.06 0.03
Matches are distributed among these distances:
123 54 0.26
124 9 0.04
125 6 0.03
126 1 0.00
128 15 0.07
129 123 0.59
ACGTcount: A:0.32, C:0.22, G:0.17, T:0.29
Consensus pattern (128 bp):
TCGCAATATGAGTTGTTTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCA
ACTCACCTCTCGCAATATGAGTTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTC
Found at i:61138841 original size:73 final size:71
Alignment explanation
Indices: 61138717--61138985 Score: 269
Period size: 73 Copynumber: 3.7 Consensus size: 71
61138707 AGGTTCAACC
* * * * * *
61138717 CACCTCTCGCAATATGAGT-ATTTTCT-AAACATAA-ACTAAAAATACCTCAGCGTGCCCCGAGG
1 CACCTCTCACAATATGAGTGATTTT-TGAAACAAAAGAATTAAAATACCTCAGCGTGACCTGAGG
61138779 CTCGACT
65 CTCGACT
*
61138786 CACCCCTCACAATATGAGCTGATTTTTGAAACAAAAGGAATTAAAATACCTCAGCGTGACCTGAG
1 CACCTCTCACAATATGAG-TGATTTTTGAAACAAAA-GAATTAAAATACCTCAGCGTGACCTGAG
*
61138851 GCTTGACT
64 GCTCGACT
* * * *
61138859 CACCTCTCACAATATGAGTCAATTTTTGAAACATAA-ACTAAAAATACCTCAGCGTGTGACCTGA
1 CACCTCTCACAATATGAGT-GATTTTTGAAACAAAAGAATTAAAATACCTCAGC--GTGACCTGA
*
61138923 GGCTCAACT
63 GGCTCGACT
** * *
61138932 CATTTCTCACAATATGAGTTGATTTTTTGAAA-ACATGAATTAAAGATACCTCAG
1 CACCTCTCACAATATGAG-TGA-TTTTTGAAACAAAAGAATTAAA-ATACCTCAG
61138986 AGTACCCAAA
Statistics
Matches: 166, Mismatches: 22, Indels: 18
0.81 0.11 0.09
Matches are distributed among these distances:
69 16 0.10
70 2 0.01
71 27 0.16
72 1 0.01
73 96 0.58
74 15 0.09
75 9 0.05
ACGTcount: A:0.35, C:0.23, G:0.15, T:0.27
Consensus pattern (71 bp):
CACCTCTCACAATATGAGTGATTTTTGAAACAAAAGAATTAAAATACCTCAGCGTGACCTGAGGC
TCGACT
Found at i:61138981 original size:146 final size:142
Alignment explanation
Indices: 61138717--61138985 Score: 364
Period size: 146 Copynumber: 1.9 Consensus size: 142
61138707 AGGTTCAACC
* *
61138717 CACCTCTCGCAATATGAGTATTTTCTAAACATAAACTAAAAATACCTCAGCGTGCCCCGAGGCTC
1 CACCTCTCACAATATGAGTATTTTCTAAACATAAACTAAAAATACCTCAGCGTGACCCGAGGCTC
*
61138782 GACTCACCCCTCACAATATGAGCTGATTTTTGAAACAAAAGGAATTAAAATACCTCAGCGTGACC
66 AACTCACCCCTCACAATATGAGCTGATTTTTGAAACAAAAGGAATTAAAATACCTCAGCGTGACC
61138847 TGAGGCTTGACT
131 TGAGGCTTGACT
*
61138859 CACCTCTCACAATATGAGTCAATTTT-TGAAACATAAACTAAAAATACCTCAGCGTGTGACCTGA
1 CACCTCTCACAATATGAGT--ATTTTCT-AAACATAAACTAAAAATACCTCAGC--GTGACCCGA
*** * * *
61138923 GGCTCAACTCATTTCTCACAATATGAGTTGATTTTTTG-AA-AACATGAATTAAAGATACCTCAG
61 GGCTCAACTCACCCCTCACAATATGAGCTGA-TTTTTGAAACAAAAGGAATTAAA-ATACCTCAG
61138986 AGTACCCAAA
Statistics
Matches: 110, Mismatches: 10, Indels: 10
0.85 0.08 0.08
Matches are distributed among these distances:
142 18 0.16
143 1 0.01
144 30 0.27
145 11 0.10
146 44 0.40
147 6 0.05
ACGTcount: A:0.35, C:0.23, G:0.15, T:0.27
Consensus pattern (142 bp):
CACCTCTCACAATATGAGTATTTTCTAAACATAAACTAAAAATACCTCAGCGTGACCCGAGGCTC
AACTCACCCCTCACAATATGAGCTGATTTTTGAAACAAAAGGAATTAAAATACCTCAGCGTGACC
TGAGGCTTGACT
Found at i:61148398 original size:46 final size:45
Alignment explanation
Indices: 61148234--61148400 Score: 180
Period size: 46 Copynumber: 3.6 Consensus size: 45
61148224 AGCATCCGAG
* *
61148234 CTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGTCCGAA
1 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG-CCCAA
* * * *
61148280 CTCGTTGAGTTGAGTCCGAATTC-GTGA--GATG-TAACTAGGCATCCTAA
1 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--GC--CC-AA
61148327 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCAA
1 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCAA
61148372 GCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 -CTCGTTGAGTTGAGTCCGAGTTCACTTA
61148401 GGGGCGGGTT
Statistics
Matches: 100, Mismatches: 10, Indels: 22
0.76 0.08 0.17
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
44 1 0.01
45 4 0.04
46 53 0.53
47 24 0.24
48 4 0.04
50 5 0.05
51 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.27, T:0.30
Consensus pattern (45 bp):
CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCAA
Found at i:61155176 original size:40 final size:40
Alignment explanation
Indices: 61155132--61155279 Score: 251
Period size: 40 Copynumber: 3.7 Consensus size: 40
61155122 GCAAACACAT
* * *
61155132 TTGCCTTCGGGTCTTAACCCGGACATATCAACTTGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
61155172 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
* *
61155212 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCGTAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
61155252 TTGCCTTCGGGTCTTAGCCCGGATATAT
1 TTGCCTTCGGGTCTTAGCCCGGATATAT
61155280 TCCAATGCTC
Statistics
Matches: 102, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 102 1.00
ACGTcount: A:0.22, C:0.27, G:0.21, T:0.30
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
Found at i:61165292 original size:48 final size:48
Alignment explanation
Indices: 61165218--61165712 Score: 792
Period size: 48 Copynumber: 10.3 Consensus size: 48
61165208 GGGTGTTACA
* *
61165218 AAATATGTATGAGATATGTATATGTGGTAAAGTCGAATGGCTAATATG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
* * * *
61165266 AAATATGTATGAGATATATATGTGTGGTAAGGCCGAATGGCTAGTGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
*
61165314 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATATG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
*
61165362 AAATATGTATGAGATATATATATGTGGTAAAGCCGAATGGCTAATGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
* **
61165410 AAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAACATG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
* *
61165458 AAATATGTATGAGATATATATATGTGGTAAAGCCGAATGGCTAGTGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
* *
61165506 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGACTAGTGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
* *
61165554 AAATATGTATGATATATGTATATGTGGTAAAGCCGAATGGCTAATATG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
* *
61165602 AAATATGTATGAGATATATATATGTGGTAAATCCGAATGGCTAATGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
* *
61165650 AAATATGCATGAGATATGTATATTTGGTAAAGCCGAATGGCTAATGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
*
61165698 AAATATGTAAGAGAT
1 AAATATGTATGAGAT
61165713 GTGTGTATAT
Statistics
Matches: 409, Mismatches: 38, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 409 1.00
ACGTcount: A:0.37, C:0.06, G:0.25, T:0.32
Consensus pattern (48 bp):
AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
Found at i:61165903 original size:37 final size:37
Alignment explanation
Indices: 61165853--61165955 Score: 179
Period size: 37 Copynumber: 2.8 Consensus size: 37
61165843 GGAAATATAT
61165853 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
61165890 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
** *
61165927 TTTGGGTAAGACCCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
61165956 GGACTATTCG
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 63 1.00
ACGTcount: A:0.22, C:0.18, G:0.32, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:61168725 original size:40 final size:40
Alignment explanation
Indices: 61168631--61168855 Score: 249
Period size: 40 Copynumber: 5.6 Consensus size: 40
61168621 TATTCGAATG
*
61168631 ATATCCGGGCTAAG-TCCCGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTA-GTGACT
* * * *
61168672 ATAACCGGACTAAGATCCGAAGGCATTCGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAG-TGACT
* ** *
61168712 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCAATT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
* * *
61168752 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
* *
61168792 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTAGTGACT
* *
61168832 ACATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGATCCGAAGGC
61168856 CTTGTGCAAG
Statistics
Matches: 156, Mismatches: 23, Indels: 11
0.82 0.12 0.06
Matches are distributed among these distances:
40 126 0.81
41 29 0.19
42 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
Found at i:61168811 original size:80 final size:80
Alignment explanation
Indices: 61168631--61168891 Score: 303
Period size: 80 Copynumber: 3.3 Consensus size: 80
61168621 TATTCGAATG
* * * *
61168631 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-GTGACTATATCCGGGCTAAGACCCGAAGGC
*
61168696 ATTCGTGCGAGTTGCT
65 ATTCGTGCGAGTCGCT
* ** * *
61168712 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCAATTATATCCGGGCTAAAACCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
* *
61168777 TTTGTGCTAG-CGACT
66 TTCGTGCGAGTCG-CT
* * * *
61168792 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACCACATCCGGGCTAAGACCCGAAGGCC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
* * *
61168857 TT-GTGCAAGTAGTT
66 TTCGTGCGAGTCGCT
*
61168871 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
61168892 ATTACTTGAG
Statistics
Matches: 153, Mismatches: 25, Indels: 7
0.83 0.14 0.04
Matches are distributed among these distances:
78 14 0.09
79 14 0.09
80 93 0.61
81 32 0.21
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCGCT
Found at i:61168845 original size:120 final size:120
Alignment explanation
Indices: 61168631--61168891 Score: 332
Period size: 120 Copynumber: 2.2 Consensus size: 120
61168621 TATTCGAATG
* * *
61168631 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAATCCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGC
* * * * *
61168696 ATTCGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCAATT
66 ATTCATGCGAGTTGCCACATCCGGGCTAAGACCCGAAGGC-CTTGTGCAAGCAATT
* * *
61168752 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTA-GCGACTATATCCGGGCTAAG-TCCCGAAGG
1 ATATCCGGGCTAAATCCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGAT-CCGAAGG
* * * *
61168815 CATTTATGCTAG-TGACCACATCCGGGCTAAGACCCGAAGGCCTTGTGCAAGTAGTT
65 CATTCATGCGAGTTG-CCACATCCGGGCTAAGACCCGAAGGCCTTGTGCAAGCAATT
61168871 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAATCCCGAAG
61168892 ATTACTTGAG
Statistics
Matches: 122, Mismatches: 16, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
118 14 0.11
119 20 0.16
120 57 0.47
121 31 0.25
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (120 bp):
ATATCCGGGCTAAATCCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGC
ATTCATGCGAGTTGCCACATCCGGGCTAAGACCCGAAGGCCTTGTGCAAGCAATT
Found at i:61170560 original size:40 final size:40
Alignment explanation
Indices: 61170505--61171110 Score: 827
Period size: 40 Copynumber: 15.2 Consensus size: 40
61170495 GAGAATTGAG
*
61170505 AGTGATATACCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
61170545 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
61170585 AGTGATATACCCGGGCTAAGTCTCGAAGAGCATTCGCGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
61170625 AGAGTTATATCCGGGCTAAGTCCTGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
61170665 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
61170705 AGTGATATACCCGGGCTAAGTCTCGAAGAGCATTCGCGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
61170745 AGAGTTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
61170785 AGTGATATACCCGGGCTAAGTCTCGAAGAGCATTCGCGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
61170825 AGAGTTATATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * * * *
61170865 AGAGTTATATCAGGGTTAAGTCCCGAAGAGCATTCATGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
61170905 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
61170945 AGTGATATACCCGGGCTAAGTCTCGAAGAGCATTCGCGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * * * *
61170985 AGAGTTATATCCGGGCTAAATCTCGAAGAGCATTTGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * * * *
61171025 AGAGTTATATCAGGGTTAAGTCCCGAAGAGCATTCATGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * * *
61171065 GGTGTTATATCCGGGCT-AGTTCCCGAAGAGCAATCATGCT
1 AGTGATATATCCGGGCTAAG-TCCCGAAGAGCATTCGTGCT
*
61171105 GGTGAT
1 AGTGAT
61171111 GTGTATTCGG
Statistics
Matches: 505, Mismatches: 60, Indels: 2
0.89 0.11 0.00
Matches are distributed among these distances:
39 2 0.00
40 503 1.00
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:61170728 original size:120 final size:120
Alignment explanation
Indices: 61170510--61171096 Score: 942
Period size: 120 Copynumber: 4.9 Consensus size: 120
61170500 TTGAGAGTGA
*
61170510 TATACCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGAG
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGAG
61170575 CATTCGTGCTAGTGATATACCCGGGCTAAGTCTCGAAGAGCATTCGCGCTAGAGT
66 CATTCGTGCTAGTGATATACCCGGGCTAAGTCTCGAAGAGCATTCGCGCTAGAGT
*
61170630 TATATCCGGGCTAAGTCCTGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGAG
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGAG
61170695 CATTCGTGCTAGTGATATACCCGGGCTAAGTCTCGAAGAGCATTCGCGCTAGAGT
66 CATTCGTGCTAGTGATATACCCGGGCTAAGTCTCGAAGAGCATTCGCGCTAGAGT
* *
61170750 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATACCCGGGCTAAGTCTCGAAGAG
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGAG
* * * * *
61170815 CATTCGCGCTAGAGTTATATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTAGAGT
66 CATTCGTGCTAGTGATATACCCGGGCTAAGTCTCGAAGAGCATTCGCGCTAGAGT
* * *
61170870 TATATCAGGGTTAAGTCCCGAAGAGCATTCATGCTAGTGATATATCCGGGCTAAGTCCCGAAGAG
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGAG
61170935 CATTCGTGCTAGTGATATACCCGGGCTAAGTCTCGAAGAGCATTCGCGCTAGAGT
66 CATTCGTGCTAGTGATATACCCGGGCTAAGTCTCGAAGAGCATTCGCGCTAGAGT
* * * * * * *
61170990 TATATCCGGGCTAAATCTCGAAGAGCATTTGTGCTAGAGTTATATCAGGGTTAAGTCCCGAAGAG
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGAG
* * * * *
61171055 CATTCATGCTGGTGTTATATCCGGGCT-AGTTCCCGAAGAGCA
66 CATTCGTGCTAGTGATATACCCGGGCTAAG-TCTCGAAGAGCA
61171097 ATCATGCTGG
Statistics
Matches: 431, Mismatches: 35, Indels: 2
0.92 0.07 0.00
Matches are distributed among these distances:
119 2 0.00
120 429 1.00
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (120 bp):
TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGAG
CATTCGTGCTAGTGATATACCCGGGCTAAGTCTCGAAGAGCATTCGCGCTAGAGT
Found at i:61171322 original size:25 final size:25
Alignment explanation
Indices: 61171272--61171322 Score: 59
Period size: 25 Copynumber: 2.0 Consensus size: 25
61171262 TGTGTAACAA
* *
61171272 CAAATGAATAGGGGCACTATGTGTG
1 CAAATGAATAGAGGCACTATGAGTG
*
61171297 CAAATGATTAGAGGCACTGA-GAGTG
1 CAAATGAATAGAGGCACT-ATGAGTG
61171322 C
1 C
61171323 GAGTTCTTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
25 21 0.95
26 1 0.05
ACGTcount: A:0.33, C:0.14, G:0.31, T:0.22
Consensus pattern (25 bp):
CAAATGAATAGAGGCACTATGAGTG
Found at i:61174841 original size:48 final size:48
Alignment explanation
Indices: 61174770--61175279 Score: 804
Period size: 48 Copynumber: 10.6 Consensus size: 48
61174760 TACAAGATAA
* * *
61174770 ATATATATATGTGGTAAAGCCGAATGGATAATGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* * **
61174818 ATATGTATATATGGTAAAACCGAATGGCTAACATGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
61174866 ATATATATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
61174914 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
**
61174962 ATATGTATATGTGGTAAAGCCGAATGGCTAACATGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
61175010 ATATATATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
61175058 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
61175106 ATATGTATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* * * *
61175154 ATATATATGTGTGGTAAGGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
61175202 ATATGTATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* * *
61175250 ATATATATATGTGGTAAAACCAAATGGCTA
1 ATATGTATATGTGGTAAAGCCGAATGGCTA
61175280 TGTATATGTG
Statistics
Matches: 425, Mismatches: 37, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
48 425 1.00
ACGTcount: A:0.37, C:0.07, G:0.26, T:0.31
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
Found at i:61175021 original size:144 final size:144
Alignment explanation
Indices: 61174770--61175279 Score: 894
Period size: 144 Copynumber: 3.5 Consensus size: 144
61174760 TACAAGATAA
* * * *
61174770 ATATATATATGTGGTAAAGCCGAATGGATAATGTGAAATATATATGAGATATGTATATATGGTAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAA
61174835 AACCGAATGGCTAACATGAAATATGTATGAGATATATATATGTGGTAAAGCCGAATGGCTAGTGT
66 AACCGAATGGCTAACATGAAATATGTATGAGATATATATATGTGGTAAAGCCGAATGGCTAGTGT
61174900 GAAATATGTATGAG
131 GAAATATGTATGAG
*
61174914 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAA
*
61174979 AGCCGAATGGCTAACATGAAATATGTATGAGATATATATATGTGGTAAAGCCGAATGGCTAGTGT
66 AACCGAATGGCTAACATGAAATATGTATGAGATATATATATGTGGTAAAGCCGAATGGCTAGTGT
61175044 GAAATATGTATGAG
131 GAAATATGTATGAG
*
61175058 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAA
* * * *
61175123 AGCCGAATGGCTAATATGAAATATGTATGAGATATATATGTGTGGTAAGGCCGAATGGCTAGTGT
66 AACCGAATGGCTAACATGAAATATGTATGAGATATATATATGTGGTAAAGCCGAATGGCTAGTGT
61175188 GAAATATGTATGAG
131 GAAATATGTATGAG
* *
61175202 ATATGTATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAGATATATATATGTGGTAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAA
*
61175267 AACCAAATGGCTA
66 AACCGAATGGCTA
61175280 TGTATATGTG
Statistics
Matches: 352, Mismatches: 14, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
144 352 1.00
ACGTcount: A:0.37, C:0.07, G:0.26, T:0.31
Consensus pattern (144 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAA
AACCGAATGGCTAACATGAAATATGTATGAGATATATATATGTGGTAAAGCCGAATGGCTAGTGT
GAAATATGTATGAG
Found at i:61175291 original size:75 final size:75
Alignment explanation
Indices: 61175203--61175354 Score: 268
Period size: 75 Copynumber: 2.0 Consensus size: 75
61175193 ATGTATGAGA
*
61175203 TATGTATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAGATATATATATGTGGTAAA
1 TATGTATATGTGGTAAAGCCGAATGGCTAACATGAAATATGTATGAGATATATATATGTGGTAAA
61175268 ACCAAATGGC
66 ACCAAATGGC
*
61175278 TATGTATATGTGGTAAAGCCGAATGGCTAACATGAAATATGTATGATATATATATATGTGGTAAA
1 TATGTATATGTGGTAAAGCCGAATGGCTAACATGAAATATGTATGAGATATATATATGTGGTAAA
* *
61175343 GCCGAATGGC
66 ACCAAATGGC
61175353 TA
1 TA
61175355 GTGTGAAATA
Statistics
Matches: 73, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
75 73 1.00
ACGTcount: A:0.38, C:0.09, G:0.23, T:0.31
Consensus pattern (75 bp):
TATGTATATGTGGTAAAGCCGAATGGCTAACATGAAATATGTATGAGATATATATATGTGGTAAA
ACCAAATGGC
Found at i:61175293 original size:27 final size:27
Alignment explanation
Indices: 61175255--61175306 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
61175245 ATGAGATATA
61175255 TATATGTGGTAAAACCAAATGGCTATG
1 TATATGTGGTAAAACCAAATGGCTATG
* *
61175282 TATATGTGGTAAAGCCGAATGGCTA
1 TATATGTGGTAAAACCAAATGGCTA
61175307 ACATGAAATA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.35, C:0.12, G:0.25, T:0.29
Consensus pattern (27 bp):
TATATGTGGTAAAACCAAATGGCTATG
Found at i:61175303 original size:123 final size:123
Alignment explanation
Indices: 61175163--61175402 Score: 381
Period size: 123 Copynumber: 2.0 Consensus size: 123
61175153 GATATATATG
* *** *
61175163 TGTGGTAAGGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATG
1 TGTGGTAAAGCCGAATGGCTAACATGAAATATGTATGAGATATATATATGTGGTAAAGCCGAATG
61175228 GCTAATATGAAATATGTATGAGATATATATATGTGGTAAAACCAAATGGCTATGTATA
66 GCTAATATGAAATATGTATGAGATATATATATGTGGTAAAACCAAATGGCTATGTATA
*
61175286 TGTGGTAAAGCCGAATGGCTAACATGAAATATGTATGATATATATATATGTGGTAAAGCCGAATG
1 TGTGGTAAAGCCGAATGGCTAACATGAAATATGTATGAGATATATATATGTGGTAAAGCCGAATG
* * * * *
61175351 GCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTA
66 GCTAATATGAAATATGTATGAGATATATATATGTGGTAAAACCAAATGGCTA
61175403 ATATGAAATA
Statistics
Matches: 106, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
123 106 1.00
ACGTcount: A:0.35, C:0.08, G:0.26, T:0.30
Consensus pattern (123 bp):
TGTGGTAAAGCCGAATGGCTAACATGAAATATGTATGAGATATATATATGTGGTAAAGCCGAATG
GCTAATATGAAATATGTATGAGATATATATATGTGGTAAAACCAAATGGCTATGTATA
Found at i:61175334 original size:48 final size:48
Alignment explanation
Indices: 61175282--61175518 Score: 375
Period size: 48 Copynumber: 4.9 Consensus size: 48
61175272 AATGGCTATG
** *
61175282 TATATGTGGTAAAGCCGAATGGCTAACATGAAATATGTATGATATATA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATA
* *
61175330 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATA
*
61175378 TATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAGATATA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATA
* * *
61175426 TATATGTGGTAAATCCGAATGGCTAATGTGAAATATGCATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATA
* *
61175474 TATATTTGGTAAAGCCGAATGGCTAATGTGAAATATGTAGGAGAT
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAT
61175519 GTGTGTATAT
Statistics
Matches: 173, Mismatches: 16, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
48 173 1.00
ACGTcount: A:0.37, C:0.07, G:0.25, T:0.31
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATA
Found at i:61175392 original size:171 final size:171
Alignment explanation
Indices: 61175107--61175450 Score: 634
Period size: 171 Copynumber: 2.0 Consensus size: 171
61175097 ATGTATGAGA
* * *
61175107 TATGTATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAGATATATATGTGTGGTAAG
1 TATGTATATGTGGTAAAGCCGAATGGCTAACATGAAATATGTATGAGATATATATATGTGGTAAA
61175172 GCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATATG
66 GCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATATG
61175237 AAATATGTATGAGATATATATATGTGGTAAAACCAAATGGC
131 AAATATGTATGAGATATATATATGTGGTAAAACCAAATGGC
*
61175278 TATGTATATGTGGTAAAGCCGAATGGCTAACATGAAATATGTATGATATATATATATGTGGTAAA
1 TATGTATATGTGGTAAAGCCGAATGGCTAACATGAAATATGTATGAGATATATATATGTGGTAAA
61175343 GCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATATG
66 GCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATATG
* *
61175408 AAATATGTATGAGATATATATATGTGGTAAATCCGAATGGC
131 AAATATGTATGAGATATATATATGTGGTAAAACCAAATGGC
61175449 TA
1 TA
61175451 ATGTGAAATA
Statistics
Matches: 167, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
171 167 1.00
ACGTcount: A:0.36, C:0.07, G:0.25, T:0.31
Consensus pattern (171 bp):
TATGTATATGTGGTAAAGCCGAATGGCTAACATGAAATATGTATGAGATATATATATGTGGTAAA
GCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATATG
AAATATGTATGAGATATATATATGTGGTAAAACCAAATGGC
Found at i:61175438 original size:219 final size:219
Alignment explanation
Indices: 61175059--61175498 Score: 700
Period size: 219 Copynumber: 2.0 Consensus size: 219
61175049 ATGTATGAGA
*** *
61175059 TATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAA
1 TATGTATATGTGGTAAAGCCGAATGGCTAACATGAAATATGTATGAGATATATATATGTGGTAAA
* * * *
61175124 GCCGAATGGCTAATATGAAATATGTATGAGATATATATGTGTGGTAAGGCCGAATGGCTAGTGTG
66 GCCGAATGGCTAATATGAAATATGTATGAGATATATATATGTGGTAAAGCCGAATGGCTAATATG
* *
61175189 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAGATAT
131 AAATATGTATGAGATATATATATGTGGTAAAGCCGAATGGCTAATATGAAATATGCATGAGATAT
61175254 ATATATGTGGTAAAACCAAATGGC
196 ATATATGTGGTAAAACCAAATGGC
*
61175278 TATGTATATGTGGTAAAGCCGAATGGCTAACATGAAATATGTATGATATATATATATGTGGTAAA
1 TATGTATATGTGGTAAAGCCGAATGGCTAACATGAAATATGTATGAGATATATATATGTGGTAAA
* * *
61175343 GCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATATG
66 GCCGAATGGCTAATATGAAATATGTATGAGATATATATATGTGGTAAAGCCGAATGGCTAATATG
* *
61175408 AAATATGTATGAGATATATATATGTGGTAAATCCGAATGGCTAATGTGAAATATGCATGAGATAT
131 AAATATGTATGAGATATATATATGTGGTAAAGCCGAATGGCTAATATGAAATATGCATGAGATAT
* * * *
61175473 GTATATTTGGTAAAGCCGAATGGC
196 ATATATGTGGTAAAACCAAATGGC
61175497 TA
1 TA
61175499 ATGTGAAATA
Statistics
Matches: 201, Mismatches: 20, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
219 201 1.00
ACGTcount: A:0.36, C:0.07, G:0.25, T:0.31
Consensus pattern (219 bp):
TATGTATATGTGGTAAAGCCGAATGGCTAACATGAAATATGTATGAGATATATATATGTGGTAAA
GCCGAATGGCTAATATGAAATATGTATGAGATATATATATGTGGTAAAGCCGAATGGCTAATATG
AAATATGTATGAGATATATATATGTGGTAAAGCCGAATGGCTAATATGAAATATGCATGAGATAT
ATATATGTGGTAAAACCAAATGGC
Found at i:61177321 original size:40 final size:40
Alignment explanation
Indices: 61177262--61177439 Score: 202
Period size: 40 Copynumber: 4.5 Consensus size: 40
61177252 CGGATGATAA
** *
61177262 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAACCCCGAAGGCATTTGTGCGAGTGACTATA-T
* *
61177302 CCGAGCTAAACCCCGAAGGCATTTGTGCTAGTGACTA-ACT
1 CCGGGCTAAACCCCGAAGGCATTTGTGCGAGTGACTATA-T
* *
61177342 CCGGGCTAAGCCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAACCCCGAAGGCATTTGTGCGAGTGACTATAT
** *
61177382 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGT-AGCTATAT
1 CCGGGCTAAACCCCGAAGGCATTTGTGCGAGTGA-CTATAT
*
61177422 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAACCCCGAAGG
61177440 TACTTGGTTT
Statistics
Matches: 125, Mismatches: 11, Indels: 5
0.89 0.08 0.04
Matches are distributed among these distances:
39 16 0.13
40 108 0.86
41 1 0.01
ACGTcount: A:0.25, C:0.25, G:0.27, T:0.23
Consensus pattern (40 bp):
CCGGGCTAAACCCCGAAGGCATTTGTGCGAGTGACTATAT
Found at i:61178901 original size:37 final size:37
Alignment explanation
Indices: 61178851--61178953 Score: 179
Period size: 37 Copynumber: 2.8 Consensus size: 37
61178841 GGAAATATAT
61178851 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTC
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTC
*
61178888 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTC
* *
61178925 TTCGGGTAAGACCCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
61178954 GGACTATTCG
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 63 1.00
ACGTcount: A:0.22, C:0.20, G:0.31, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTC
Found at i:61180810 original size:22 final size:22
Alignment explanation
Indices: 61180783--61180905 Score: 58
Period size: 22 Copynumber: 5.3 Consensus size: 22
61180773 ATGTGCATAT
61180783 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* * *
61180805 ATGTGATGAATG-TGAACAT-GCATA
1 ATGTGAT-AAGGCCG-A-ATGGC-CA
*
61180829 TATGTGATAAGGCCAAATGGCCA
1 -ATGTGATAAGGCCGAATGGCCA
* *
61180852 ATGTGATGAATGTG-AGCAT-G-CA
1 ATGTGAT-AA-G-GCCGAATGGCCA
61180874 TATGTGTGATAAGGCCGAATGGCCA
1 -A--TGTGATAAGGCCGAATGGCCA
61180899 ATGTGAT
1 ATGTGAT
61180906 GAATATGAAC
Statistics
Matches: 73, Mismatches: 12, Indels: 32
0.62 0.10 0.27
Matches are distributed among these distances:
22 24 0.33
23 17 0.23
24 16 0.22
25 16 0.22
ACGTcount: A:0.33, C:0.13, G:0.29, T:0.25
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:61180827 original size:47 final size:47
Alignment explanation
Indices: 61180767--61180951 Score: 289
Period size: 47 Copynumber: 3.9 Consensus size: 47
61180757 GATAATTGTG
**
61180767 ATGTGAATGTGCATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGA
*
61180814 ATGTGAACATGCATATATGTGATAAGGCCAAATGGCCAATGTGATGA
1 ATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGA
* *
61180861 ATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGA
* * * *
61180908 ATATGAACATGCATATATGTGGTAAAGCCGAATGGCTAATGTGA
1 ATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGA
61180952 AATATATGTA
Statistics
Matches: 126, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 126 1.00
ACGTcount: A:0.34, C:0.12, G:0.28, T:0.26
Consensus pattern (47 bp):
ATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGA
Found at i:61181210 original size:37 final size:37
Alignment explanation
Indices: 61181156--61181305 Score: 246
Period size: 37 Copynumber: 4.1 Consensus size: 37
61181146 GGAAATATAT
*
61181156 TCCGGGTAAGACTCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
61181193 TCCGGGTAAGACCCGATGACTACGTGTGAAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
61181230 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* * *
61181267 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
61181304 TC
1 TC
61181306 TGAGCTAAAG
Statistics
Matches: 107, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 107 1.00
ACGTcount: A:0.23, C:0.19, G:0.31, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:61191123 original size:79 final size:81
Alignment explanation
Indices: 61190987--61191171 Score: 218
Period size: 79 Copynumber: 2.3 Consensus size: 81
61190977 TTGAATGATG
* *
61190987 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
61191051 TGTGCAAGATACTA-A
66 TGTGCAAGATACTATA
* * * **
61191066 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
* *
61191128 ATTGTGCGAGTTACTATA
64 ATTGTGCAAGATACTATA
* *
61191146 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
61191172 AACGAGTAGC
Statistics
Matches: 90, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
78 1 0.01
79 56 0.62
80 33 0.37
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
TGTGCAAGATACTATA
Found at i:61191178 original size:40 final size:40
Alignment explanation
Indices: 61190987--61191171 Score: 216
Period size: 40 Copynumber: 4.7 Consensus size: 40
61190977 TTGAATGATG
* * * *
61190987 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * * *
61191027 TCCGGACTAAGAT-CCGAAGGCATTTGTGCAAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
61191067 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
61191106 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
61191147 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
61191172 AACGAGTAGC
Statistics
Matches: 125, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
39 34 0.27
40 81 0.65
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:61191193 original size:79 final size:79
Alignment explanation
Indices: 61191040--61191204 Score: 192
Period size: 79 Copynumber: 2.1 Consensus size: 79
61191030 GGACTAAGAT
* * **
61191040 CCGAAGGCATTTGTGCAAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCAAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
61191105 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * *
61191119 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCAAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
61191182 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
61191198 CCGAAGG
1 CCGAAGG
61191205 TACGTGATTT
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
78 2 0.03
79 46 0.63
80 25 0.34
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCAAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:61201889 original size:43 final size:42
Alignment explanation
Indices: 61201824--61201973 Score: 151
Period size: 43 Copynumber: 3.5 Consensus size: 42
61201814 TCTGAGACAT
* *
61201824 CGTGTAAGACCGTGTCTGGGACACAGGCCTCGATTTAGAATTA
1 CGTGTAAGACCATGTCTGGGACACAGGCATCGATTT-GAATTA
* * *
61201867 CGTATAAGACCATGTCTGGGACATC-GGCATCGTATCTG-ATTT
1 CGTGTAAGACCATGTCTGGGACA-CAGGCATCG-ATTTGAATTA
* * *
61201909 CGTGTAAGACCCTGTCTGGGATAGAGGCATCGATATTGAATTA
1 CGTGTAAGACCATGTCTGGGACACAGGCATCGAT-TTGAATTA
* * *
61201952 CATGTAAGACCACGTTTGGGAC
1 CGTGTAAGACCATGTCTGGGAC
61201974 GTGGGCATTG
Statistics
Matches: 86, Mismatches: 16, Indels: 10
0.77 0.14 0.09
Matches are distributed among these distances:
41 2 0.02
42 32 0.37
43 48 0.56
44 4 0.05
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.27
Consensus pattern (42 bp):
CGTGTAAGACCATGTCTGGGACACAGGCATCGATTTGAATTA
Found at i:61203135 original size:19 final size:20
Alignment explanation
Indices: 61203097--61203135 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
61203087 ATATATGTTA
* *
61203097 TTCTGTATTGTTCTGTAATG
1 TTCTGTATTATTCGGTAATG
61203117 TTCTGT-TTATTCGGTAATG
1 TTCTGTATTATTCGGTAATG
61203136 CCCTTACCTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 11 0.65
20 6 0.35
ACGTcount: A:0.15, C:0.10, G:0.21, T:0.54
Consensus pattern (20 bp):
TTCTGTATTATTCGGTAATG
Found at i:61208821 original size:42 final size:43
Alignment explanation
Indices: 61208722--61208859 Score: 122
Period size: 43 Copynumber: 3.2 Consensus size: 43
61208712 TGAGATATCG
* * * *
61208722 TGTAAGACCGTGTCTGGGACACAGGCCTCG--ATTGAGATATACG
1 TGTAAGACCATGTCTGGGACAGAGGCATCGATATTGA-AT-TACA
* * ** * *
61208765 TATAAGACCATGTCTGTGACATCGGCATCG-TATCTG-ATTTCG
1 TGTAAGACCATGTCTGGGACAGAGGCATCGATAT-TGAATTACA
*
61208807 TGTAAGACCCTGTCTGGGACAGAGGCATCGATATTGAATTACA
1 TGTAAGACCATGTCTGGGACAGAGGCATCGATATTGAATTACA
61208850 TGTAAGACCA
1 TGTAAGACCA
61208860 CATCCGGGAC
Statistics
Matches: 76, Mismatches: 15, Indels: 8
0.77 0.15 0.08
Matches are distributed among these distances:
42 30 0.39
43 42 0.55
44 2 0.03
45 2 0.03
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.27
Consensus pattern (43 bp):
TGTAAGACCATGTCTGGGACAGAGGCATCGATATTGAATTACA
Found at i:61208875 original size:85 final size:85
Alignment explanation
Indices: 61208719--61208875 Score: 192
Period size: 85 Copynumber: 1.8 Consensus size: 85
61208709 ACTTGAGATA
* * * ** * *
61208719 TCGTGTAAGACCGTGTCTGGGACACAGGCCTCGATTGAGATATACGTATAAGACCATGTCTGTGA
1 TCGTGTAAGACCCTGTCTGGGACACAGGCATCGATTGAGATATACATATAAGACCACATCCGGGA
61208784 CATCGGCATCGTATCTGATT
66 CATCGGCATCGTATCTGATT
* *
61208804 TCGTGTAAGACCCTGTCTGGGACAGAGGCATCGATATTGA-AT-TACATGTAAGACCACATCCGG
1 TCGTGTAAGACCCTGTCTGGGACACAGGCATCG--ATTGAGATATACATATAAGACCACATCCGG
*
61208867 GACGTCGGC
64 GACATCGGC
61208876 GTTGTACTTG
Statistics
Matches: 60, Mismatches: 10, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
85 53 0.88
86 2 0.03
87 5 0.08
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (85 bp):
TCGTGTAAGACCCTGTCTGGGACACAGGCATCGATTGAGATATACATATAAGACCACATCCGGGA
CATCGGCATCGTATCTGATT
Found at i:61210858 original size:49 final size:49
Alignment explanation
Indices: 61210692--61210916 Score: 306
Period size: 49 Copynumber: 4.5 Consensus size: 49
61210682 TGAGGTCGCA
* * * * *
61210692 TGTGTAGTACTAAGTGCAGGCTACCATGCGTACCCGAAAATTGTGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTG-G-TCACG
* * **
61210743 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT-GGTCACG
61210793 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACG
*
61210842 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACG
* * *
61210891 TTTGTAGTACTATGTGCAGGGTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
61210917 TGCGTACCAG
Statistics
Matches: 157, Mismatches: 16, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
49 78 0.50
50 43 0.27
51 35 0.22
52 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.29
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACG
Found at i:61217645 original size:47 final size:47
Alignment explanation
Indices: 61217582--61217885 Score: 430
Period size: 47 Copynumber: 6.4 Consensus size: 47
61217572 CCCTTCGGGA
* * *
61217582 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGC
* * *
61217629 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGC
* *
61217676 CTTATCTCATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGC
* * *
61217723 CTTATCACATATATACACTTTCACATTCATCACGTTGGTCACTCGAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGC
* *
61217770 CCTATCACATATATACACTTTCACATTCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGC
* *
61217817 CCTATCACATATATATATACTTTCACATTCATCACATTGGCCACTCGGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCACTC-GGC
*
61217867 C-TATCACATATATATACTT
1 CTTATCACATATATACACTT
61217886 GTACATCAAT
Statistics
Matches: 237, Mismatches: 17, Indels: 6
0.91 0.07 0.02
Matches are distributed among these distances:
47 193 0.81
49 40 0.17
50 4 0.02
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGC
Found at i:61224096 original size:9 final size:9
Alignment explanation
Indices: 61224082--61224116 Score: 54
Period size: 9 Copynumber: 4.0 Consensus size: 9
61224072 ATATGGATTA
61224082 AATTGAATG
1 AATTGAATG
61224091 AATTGAATG
1 AATTGAATG
*
61224100 AAATGAAT-
1 AATTGAATG
61224108 AATTGAATG
1 AATTGAATG
61224117 GTGGAATTTG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
8 7 0.30
9 16 0.70
ACGTcount: A:0.49, C:0.00, G:0.20, T:0.31
Consensus pattern (9 bp):
AATTGAATG
Done.