Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 189 of 349
Found at i:61225812 original size:43 final size:43
Alignment explanation
Indices: 61225752--61225919 Score: 300
Period size: 43 Copynumber: 3.9 Consensus size: 43
61225742 CATTTATTAA
* *
61225752 AAAAAGTGCCGCTAAAAGTCGTGGCCTTTAGCGGCGTTTGAAT
1 AAAAAGCGCCGCTAAAAGTCGTGGCCTTTAGCGGCGTTTGAAG
61225795 AAAAAGCGCCGCTAAAAGTCGTGGCCTTTAGCGGCGTTTGAAG
1 AAAAAGCGCCGCTAAAAGTCGTGGCCTTTAGCGGCGTTTGAAG
*
61225838 AAAAAGCGCCGCTAAAATTCGTGGCCTTTAGCGGCGTTTGAAG
1 AAAAAGCGCCGCTAAAAGTCGTGGCCTTTAGCGGCGTTTGAAG
*
61225881 AGAAAGCGCCGCTAAAAGTCGTGGCCTTTAGCGGCGTTT
1 AAAAAGCGCCGCTAAAAGTCGTGGCCTTTAGCGGCGTTT
61225920 TTCCCTAATT
Statistics
Matches: 120, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
43 120 1.00
ACGTcount: A:0.27, C:0.21, G:0.29, T:0.23
Consensus pattern (43 bp):
AAAAAGCGCCGCTAAAAGTCGTGGCCTTTAGCGGCGTTTGAAG
Found at i:61226016 original size:31 final size:30
Alignment explanation
Indices: 61225981--61226046 Score: 80
Period size: 30 Copynumber: 2.2 Consensus size: 30
61225971 CTTCCTGCAT
61225981 TAAAATCCAACC-AAATACAACAAATATAGCA
1 TAAAATCCAACCAAAATAC--CAAATATAGCA
* * *
61226012 TAAAATGCAGCCAAAATACCAAATTTAGCA
1 TAAAATCCAACCAAAATACCAAATATAGCA
61226042 TAAAA
1 TAAAA
61226047 AAATACAACC
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
30 15 0.48
31 10 0.32
32 6 0.19
ACGTcount: A:0.56, C:0.20, G:0.06, T:0.18
Consensus pattern (30 bp):
TAAAATCCAACCAAAATACCAAATATAGCA
Found at i:61226758 original size:13 final size:14
Alignment explanation
Indices: 61226733--61226761 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
61226723 TGATGAATTG
61226733 AATTAAACAATTAT
1 AATTAAACAATTAT
61226747 AATTAAAC-ATTAT
1 AATTAAACAATTAT
61226760 AA
1 AA
61226762 ATATTTAGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.59, C:0.07, G:0.00, T:0.34
Consensus pattern (14 bp):
AATTAAACAATTAT
Found at i:61226965 original size:16 final size:17
Alignment explanation
Indices: 61226928--61226966 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
61226918 AAAATATTAT
*
61226928 TTAATATTAGAAAGTTA
1 TTAATATTAGAAAGTAA
*
61226945 TTAATATTTGAAAG-AA
1 TTAATATTAGAAAGTAA
61226961 TTAATA
1 TTAATA
61226967 AAATTTTAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 7 0.35
17 13 0.65
ACGTcount: A:0.49, C:0.00, G:0.10, T:0.41
Consensus pattern (17 bp):
TTAATATTAGAAAGTAA
Found at i:61231975 original size:9 final size:9
Alignment explanation
Indices: 61231961--61232139 Score: 103
Period size: 9 Copynumber: 19.3 Consensus size: 9
61231951 TATTTAAGTA
61231961 TTATGTAAG
1 TTATGTAAG
61231970 TTATGTAAG
1 TTATGTAAG
*
61231979 TTATGATATG
1 TTATG-TAAG
* * *
61231989 ATATAT-AT
1 TTATGTAAG
*
61231997 TTATGTAAA
1 TTATGTAAG
* *
61232006 TTATAT-AT
1 TTATGTAAG
*
61232014 TTATCTAAG
1 TTATGTAAG
*
61232023 TTATATAAG
1 TTATGTAAG
61232032 TTATGTAAG
1 TTATGTAAG
*
61232041 TTATGTAAA
1 TTATGTAAG
*
61232050 TTATGATATAAAA
1 TTATG---T-AAG
*
61232063 TATATTTAAG
1 T-TATGTAAG
61232073 TATTATGTAAG
1 --TTATGTAAG
61232084 TTATGTAAG
1 TTATGTAAG
* *
61232093 TTATAT-AT
1 TTATGTAAG
*
61232101 TTATCTAAG
1 TTATGTAAG
*
61232110 TTATATAAG
1 TTATGTAAG
*
61232119 TTATGTATG
1 TTATGTAAG
*
61232128 TTTTGTAAG
1 TTATGTAAG
61232137 TTA
1 TTA
61232140 AATAAATTAT
Statistics
Matches: 131, Mismatches: 28, Indels: 22
0.72 0.15 0.12
Matches are distributed among these distances:
8 16 0.12
9 90 0.69
10 8 0.06
11 8 0.06
12 2 0.02
13 4 0.03
14 3 0.02
ACGTcount: A:0.37, C:0.01, G:0.13, T:0.48
Consensus pattern (9 bp):
TTATGTAAG
Found at i:61232043 original size:71 final size:69
Alignment explanation
Indices: 61231961--61232127 Score: 203
Period size: 71 Copynumber: 2.4 Consensus size: 69
61231951 TATTTAAGTA
* * *
61231961 TTATGTAAGTTATGTAAGTTATGATATGATATATATTTATGTAAATTATAT-ATTTATCTAAGTT
1 TTATGTAAGTTATGTAAGTTATGATATGAAATATATTTAAGT--ATTATATAAGTTATCTAAGTT
61232025 ATATAAG
64 ATAT-AG
* * * *
61232032 TTATGTAAGTTATGTAAATTATGATATAAAATATATTTAAGTATTATGTAAGTTATGTAAGTTAT
1 TTATGTAAGTTATGTAAGTTATGATATGAAATATATTTAAGTATTATATAAGTTATCTAAGTTAT
*
61232097 ATAT
66 ATAG
* *
61232101 TTATCTAAGTTATATAAGTTATG-TATG
1 TTATGTAAGTTATGTAAGTTATGATATG
61232128 TTTTGTAAGT
Statistics
Matches: 83, Mismatches: 12, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
68 3 0.04
69 27 0.33
70 15 0.18
71 38 0.46
ACGTcount: A:0.38, C:0.01, G:0.13, T:0.47
Consensus pattern (69 bp):
TTATGTAAGTTATGTAAGTTATGATATGAAATATATTTAAGTATTATATAAGTTATCTAAGTTAT
ATAG
Found at i:61232137 original size:114 final size:114
Alignment explanation
Indices: 61231937--61232150 Score: 288
Period size: 114 Copynumber: 1.9 Consensus size: 114
61231927 ACTAGTTATG
* * * *
61231937 TATGATATGATATATATTTAAGTATTATGTAAGTTATGTAAGTTATGATATGATATATATTTATG
1 TATGATATAAAATATATTTAAGTATTATGTAAGTTATGTAAGTTATGATATGATATATAGTTATA
* *
61232002 TAAATTATATATTTATCTAAGTTATATAAGTTATGTAAGTTATGTAAAT
66 TAAATTATATATTTATCTAAGTTAAATAAATTATGTAAGTTATGTAAAT
* *
61232051 TATGATATAAAATATATTTAAGTATTATGTAAGTTATGTAAGTTAT-ATAT-TTATCTAAGTTAT
1 TATGATATAAAATATATTTAAGTATTATGTAAGTTATGTAAGTTATGATATGATATAT-AGTTAT
* * * *
61232114 ATAAGTTATGTATGTTTTGTAAGTTAAATAAATTATG
65 ATAAATTATATAT-TTATCTAAGTTAAATAAATTATG
61232151 ATATCAAATA
Statistics
Matches: 86, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
112 4 0.05
113 19 0.22
114 63 0.73
ACGTcount: A:0.39, C:0.01, G:0.13, T:0.47
Consensus pattern (114 bp):
TATGATATAAAATATATTTAAGTATTATGTAAGTTATGTAAGTTATGATATGATATATAGTTATA
TAAATTATATATTTATCTAAGTTAAATAAATTATGTAAGTTATGTAAAT
Found at i:61232176 original size:48 final size:48
Alignment explanation
Indices: 61232032--61232177 Score: 124
Period size: 48 Copynumber: 3.0 Consensus size: 48
61232022 GTTATATAAG
*
61232032 TTATGTAAGTTATGTAAATTATGATATAAAATATATTTAAGTATTATGTAA
1 TTATGTAAGTTA-ATAAATTATGATAT-AAATATATTTAAGTATTATGT-A
* * * *
61232083 GTTATGTAAGTT-ATATATT-T-ATCTAAGT-TATATAAGTTATGTATGT-
1 -TTATGTAAGTTAATAAATTATGATATAAATATATTTAAG-TAT-TATGTA
*
61232129 TT-TGTAAGTTAAATAAATTATGATATCAAATATATTTATGTATTATGTA
1 TTATGTAAGTT-AATAAATTATGATAT-AAATATATTTAAGTATTATGTA
61232178 AGTTTTTTAT
Statistics
Matches: 75, Mismatches: 10, Indels: 21
0.71 0.09 0.20
Matches are distributed among these distances:
44 8 0.11
45 2 0.03
46 13 0.17
47 7 0.09
48 16 0.21
49 7 0.09
50 11 0.15
52 11 0.15
ACGTcount: A:0.39, C:0.01, G:0.12, T:0.47
Consensus pattern (48 bp):
TTATGTAAGTTAATAAATTATGATATAAATATATTTAAGTATTATGTA
Found at i:61232189 original size:87 final size:86
Alignment explanation
Indices: 61231997--61232181 Score: 225
Period size: 87 Copynumber: 2.1 Consensus size: 86
61231987 TGATATATAT
*
61231997 TTATGTAAATTATATATTTATCTAAGTTATATAAGTTATGTAAGTTATGTAAATTATGATATAAA
1 TTATGTAAGTTATATATTTATCTAAGTTATATAAGTTATGTAAGTTATGTAAATTA-GATATAAA
** *
61232062 ATATATTTAAGTATTATGTAAG
65 ATATATCAAAATATTATGTAAG
* * *
61232084 TTATGTAAGTTATATATTTATCTAAGTTATATAAGTTATGTATGTTTTGTAAGTTA-A-ATAAAT
1 TTATGTAAGTTATATATTTATCTAAGTTATATAAGTTATGTAAGTTATGTAAATTAGATATAAA-
61232147 TATGATATCAAATATATTTATGT-A-
65 -AT-ATATCAAA-ATA-TTATGTAAG
61232171 TTATGTAAGTT
1 TTATGTAAGTT
61232182 TTTTATTTCA
Statistics
Matches: 86, Mismatches: 7, Indels: 10
0.83 0.07 0.10
Matches are distributed among these distances:
84 5 0.06
85 1 0.01
86 2 0.02
87 69 0.80
88 3 0.03
89 6 0.07
ACGTcount: A:0.39, C:0.02, G:0.12, T:0.48
Consensus pattern (86 bp):
TTATGTAAGTTATATATTTATCTAAGTTATATAAGTTATGTAAGTTATGTAAATTAGATATAAAA
TATATCAAAATATTATGTAAG
Found at i:61232275 original size:15 final size:15
Alignment explanation
Indices: 61232255--61232310 Score: 64
Period size: 15 Copynumber: 3.8 Consensus size: 15
61232245 AAGTAGCGGG
61232255 ATTAAATAATATTTA
1 ATTAAATAATATTTA
61232270 ATTAAATAATATTT-
1 ATTAAATAATATTTA
61232284 A-TAAA-AATTATTTTA
1 ATTAAATAA-TA-TTTA
*
61232299 ATTAAGTAATAT
1 ATTAAATAATAT
61232311 ACGTGTCGTT
Statistics
Matches: 35, Mismatches: 1, Indels: 10
0.76 0.02 0.22
Matches are distributed among these distances:
12 2 0.06
13 6 0.17
14 4 0.11
15 16 0.46
16 5 0.14
17 2 0.06
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (15 bp):
ATTAAATAATATTTA
Found at i:61233387 original size:356 final size:358
Alignment explanation
Indices: 61232516--61233395 Score: 1667
Period size: 358 Copynumber: 2.5 Consensus size: 358
61232506 ATAAAATGAA
*
61232516 GAATTTTTTAAGATTCATCATACGCGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAG
1 GAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAG
* *
61232581 CTCGATATAAGTCAACCCGTCAGGTTTCCAGCCTATACACTTTGAATCTTTAAAATATTTAAAAT
66 CTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAAT
61232646 AAGGTTGGAGAGAAGGTCAGCCATTGTTGTAATTTTGATAAAAATTAGTTATAACTTTTAAAGAC
131 AAGGTTGGAGAGAAGGTCAGCCATTGTTGTAATTTTGATAAAAATTAGTTATAACTTTTAAAGAC
*
61232711 ATTTAAAAATATTAAATATTAAAATCAAACATTATTAATGCGAAAAATAGTAATTTGAATATAAT
196 ATTTAAAAATATTAAATATTAAAATCAAACATTATTAATGCAAAAAATAGTAATTTGAATATAAT
61232776 AATATAAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGATAATAAATATTCAATAGTAAA
261 AATATAAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGATAATAAATATTCAATAGTAAA
61232841 TGAGCTCGATAGAACTTTTTTTCAAGTCTTTTT
326 TGAGCTCGATAGAACTTTTTTTCAAGTCTTTTT
61232874 GAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAG
1 GAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAG
*
61232939 CTCGATATAAGGCAACCCGTCAGGTTTCCAGCCAATATACTTTGAATCTTTAAAATATTTAAAAT
66 CTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAAT
61233004 AAGGTTGGAGAGAAGGTCAGCCATTGTTGTAATTTTGATAAAAATTAGTTATAACTTTTAAAGAC
131 AAGGTTGGAGAGAAGGTCAGCCATTGTTGTAATTTTGATAAAAATTAGTTATAACTTTTAAAGAC
61233069 ATTTAAAAATATTAAATATTAAAATCAAACATTATTAATGCAAAAAAATAGTAATTTGAATATAA
196 ATTTAAAAATATTAAATATTAAAATCAAACATTATTAATGC-AAAAAATAGTAATTTGAATATAA
61233134 TAATA-AAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGA-AATAAATATTCAATAGTAA
260 TAATATAAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGATAATAAATATTCAATAGTAA
61233197 ATGAGCTCGATAGAAC-TTTTTTCAAGTCTTTTT
325 ATGAGCTCGATAGAACTTTTTTTCAAGTCTTTTT
*
61233230 GAATTTTTTAAGATTCATCATACGTGGCGTTATTACACCTAGGGAGGATCCATTATATCTTGCAG
1 GAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAG
61233295 CTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAAT
66 CTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAAT
*
61233360 AAGGTTGGAGAGAAGGTCATCCATTGTTGTAATTTT
131 AAGGTTGGAGAGAAGGTCAGCCATTGTTGTAATTTT
61233396 AATGGACAAG
Statistics
Matches: 513, Mismatches: 8, Indels: 4
0.98 0.02 0.01
Matches are distributed among these distances:
356 180 0.35
357 35 0.07
358 271 0.53
359 27 0.05
ACGTcount: A:0.37, C:0.12, G:0.15, T:0.35
Consensus pattern (358 bp):
GAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAG
CTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAAT
AAGGTTGGAGAGAAGGTCAGCCATTGTTGTAATTTTGATAAAAATTAGTTATAACTTTTAAAGAC
ATTTAAAAATATTAAATATTAAAATCAAACATTATTAATGCAAAAAATAGTAATTTGAATATAAT
AATATAAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGATAATAAATATTCAATAGTAAA
TGAGCTCGATAGAACTTTTTTTCAAGTCTTTTT
Found at i:61233474 original size:20 final size:20
Alignment explanation
Indices: 61233445--61233482 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
61233435 TTATTCATAC
*
61233445 TTAAGCTGAATCAAATATAA
1 TTAAGCTGAACCAAATATAA
*
61233465 TTAAGTTGAACCAAATAT
1 TTAAGCTGAACCAAATAT
61233483 TTAAAATTAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.47, C:0.11, G:0.11, T:0.32
Consensus pattern (20 bp):
TTAAGCTGAACCAAATATAA
Found at i:61234151 original size:183 final size:183
Alignment explanation
Indices: 61233843--61234176 Score: 650
Period size: 183 Copynumber: 1.8 Consensus size: 183
61233833 CCTAGAACAG
61233843 ATGTAAGATTATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATAAAAACTTTATCTAT
1 ATGTAAGATTATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATAAAAACTTTATCTAT
61233908 ATCAGTACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGTTGCAGGAGG
66 ATCAGTACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGTTGCAGGAGG
61233973 AGCAGGAAGCAGTAACTGAAATACATACAACATTAATTCACTAATACAGACAC
131 AGCAGGAAGCAGTAACTGAAATACATACAACATTAATTCACTAATACAGACAC
*
61234026 ATGTAAGATTATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATGAAAACTTTATCTAT
1 ATGTAAGATTATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATAAAAACTTTATCTAT
*
61234091 ATCAGTACCAAATATTAATTCGAAGATTAGATGGCAGCTTCAGTTGAACCAATAGTTGCAGGAGG
66 ATCAGTACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGTTGCAGGAGG
61234156 AGCAGGAAGCAGTAACTGAAA
131 AGCAGGAAGCAGTAACTGAAA
61234177 CATATACTGT
Statistics
Matches: 149, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
183 149 1.00
ACGTcount: A:0.42, C:0.14, G:0.17, T:0.27
Consensus pattern (183 bp):
ATGTAAGATTATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATAAAAACTTTATCTAT
ATCAGTACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGTTGCAGGAGG
AGCAGGAAGCAGTAACTGAAATACATACAACATTAATTCACTAATACAGACAC
Found at i:61245100 original size:14 final size:13
Alignment explanation
Indices: 61245081--61245110 Score: 51
Period size: 14 Copynumber: 2.2 Consensus size: 13
61245071 CAATATAATT
61245081 TTACTTCATATACA
1 TTACTTCATATA-A
61245095 TTACTTCATATAA
1 TTACTTCATATAA
61245108 TTA
1 TTA
61245111 TTATAGTAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 4 0.25
14 12 0.75
ACGTcount: A:0.37, C:0.17, G:0.00, T:0.47
Consensus pattern (13 bp):
TTACTTCATATAA
Found at i:61248037 original size:40 final size:40
Alignment explanation
Indices: 61247993--61248140 Score: 233
Period size: 40 Copynumber: 3.7 Consensus size: 40
61247983 GCAAACACAT
* * * *
61247993 TTGCCTTCGGGTCTTAACCCGGACATATCAACTTGTATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
61248033 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
* * *
61248073 TTGCCTTCGGGTCATATCCCGGATATATCAACTCGCGTAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
61248113 TTGCCTTCGGGTCTTAGCCCGGATATAT
1 TTGCCTTCGGGTCTTAGCCCGGATATAT
61248141 TCCAATGCTC
Statistics
Matches: 99, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 99 1.00
ACGTcount: A:0.22, C:0.26, G:0.20, T:0.32
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
Found at i:61256621 original size:40 final size:40
Alignment explanation
Indices: 61256577--61256724 Score: 233
Period size: 40 Copynumber: 3.7 Consensus size: 40
61256567 GCAAACACAT
* * * *
61256577 TTGCCTTCGGGTCTTAACCCGGACATATCAACTTGTATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
61256617 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
* * *
61256657 TTGCCTTCGGGTCATATCCCGGATATATCAACTCGCGTAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
61256697 TTGCCTTCGGGTCTTAGCCCGGATATAT
1 TTGCCTTCGGGTCTTAGCCCGGATATAT
61256725 TCCAATGCTC
Statistics
Matches: 99, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 99 1.00
ACGTcount: A:0.22, C:0.26, G:0.20, T:0.32
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
Found at i:61260059 original size:15 final size:15
Alignment explanation
Indices: 61260039--61260087 Score: 52
Period size: 15 Copynumber: 3.5 Consensus size: 15
61260029 GGTAAAAATT
61260039 TTGGGGGAGAAGAAG
1 TTGGGGGAGAAGAAG
*
61260054 TT-GGGG-G-A-AAT
1 TTGGGGGAGAAGAAG
*
61260065 TTGAGGGAGAAGAAG
1 TTGGGGGAGAAGAAG
61260080 TTGGGGGA
1 TTGGGGGA
61260088 AATTTGGGGG
Statistics
Matches: 26, Mismatches: 4, Indels: 8
0.68 0.11 0.21
Matches are distributed among these distances:
11 4 0.15
12 4 0.15
13 2 0.08
14 5 0.19
15 11 0.42
ACGTcount: A:0.31, C:0.00, G:0.51, T:0.18
Consensus pattern (15 bp):
TTGGGGGAGAAGAAG
Found at i:61260072 original size:26 final size:26
Alignment explanation
Indices: 61260038--61260098 Score: 113
Period size: 26 Copynumber: 2.3 Consensus size: 26
61260028 GGGTAAAAAT
61260038 TTTGGGGGAGAAGAAGTTGGGGGAAA
1 TTTGGGGGAGAAGAAGTTGGGGGAAA
*
61260064 TTTGAGGGAGAAGAAGTTGGGGGAAA
1 TTTGGGGGAGAAGAAGTTGGGGGAAA
61260090 TTTGGGGGA
1 TTTGGGGGA
61260099 AATCGGGGAA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 33 1.00
ACGTcount: A:0.30, C:0.00, G:0.49, T:0.21
Consensus pattern (26 bp):
TTTGGGGGAGAAGAAGTTGGGGGAAA
Found at i:61260096 original size:11 final size:11
Alignment explanation
Indices: 61260054--61260101 Score: 51
Period size: 11 Copynumber: 4.0 Consensus size: 11
61260044 GGAGAAGAAG
61260054 TTGGGGGAAAT
1 TTGGGGGAAAT
*
61260065 TTGAGGGAGAAGAAG
1 TTG-GGG-G-A-AAT
61260080 TTGGGGGAAAT
1 TTGGGGGAAAT
61260091 TTGGGGGAAAT
1 TTGGGGGAAAT
61260102 CGGGGAAATT
Statistics
Matches: 31, Mismatches: 2, Indels: 8
0.76 0.05 0.20
Matches are distributed among these distances:
11 16 0.52
12 4 0.13
13 2 0.06
14 4 0.13
15 5 0.16
ACGTcount: A:0.31, C:0.00, G:0.46, T:0.23
Consensus pattern (11 bp):
TTGGGGGAAAT
Found at i:61260411 original size:28 final size:28
Alignment explanation
Indices: 61260379--61260436 Score: 73
Period size: 28 Copynumber: 2.1 Consensus size: 28
61260369 AATCAAAACT
*
61260379 CTAT-ACCTTAAACCATTAAACTATATCC
1 CTATAACCTTAAACC-CTAAACTATATCC
* *
61260407 CTATAACCTTAATCCCTAAAGTATATCC
1 CTATAACCTTAAACCCTAAACTATATCC
61260435 CT
1 CT
61260437 TAAACCCTAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
28 17 0.65
29 9 0.35
ACGTcount: A:0.36, C:0.29, G:0.02, T:0.33
Consensus pattern (28 bp):
CTATAACCTTAAACCCTAAACTATATCC
Found at i:61260437 original size:21 final size:21
Alignment explanation
Indices: 61260413--61260456 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
61260403 ATCCCTATAA
* *
61260413 CCTTAATCCCTAAAGTATATC
1 CCTTAAACCCTAAACTATATC
61260434 CCTTAAACCCTAAACTATATC
1 CCTTAAACCCTAAACTATATC
61260455 CC
1 CC
61260457 CTAACCATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.34, C:0.34, G:0.02, T:0.30
Consensus pattern (21 bp):
CCTTAAACCCTAAACTATATC
Found at i:61260724 original size:21 final size:22
Alignment explanation
Indices: 61260693--61260736 Score: 72
Period size: 21 Copynumber: 2.0 Consensus size: 22
61260683 CCTAACCACT
*
61260693 AACCCCTAACCCTTAAATCATA
1 AACCCCTAACCCTTAAACCATA
61260715 AACCCC-AACCCTTAAACCATA
1 AACCCCTAACCCTTAAACCATA
61260736 A
1 A
61260737 TACATAAACC
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
21 15 0.71
22 6 0.29
ACGTcount: A:0.43, C:0.39, G:0.00, T:0.18
Consensus pattern (22 bp):
AACCCCTAACCCTTAAACCATA
Found at i:61260867 original size:41 final size:41
Alignment explanation
Indices: 61260810--61260908 Score: 164
Period size: 41 Copynumber: 2.4 Consensus size: 41
61260800 AACCCTAAAC
*
61260810 TTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGC-TCTTA
1 TTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTTC-GA
61260851 TTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTTCGA
1 TTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTTCGA
*
61260892 TTTTTAGCGGCGCTTTA
1 TTTTTAGCGGCGTTTTA
61260909 ATGCTCTTAT
Statistics
Matches: 55, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
41 53 0.96
42 2 0.04
ACGTcount: A:0.20, C:0.23, G:0.21, T:0.35
Consensus pattern (41 bp):
TTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTTCGA
Found at i:61260905 original size:24 final size:25
Alignment explanation
Indices: 61260873--61260928 Score: 62
Period size: 26 Copynumber: 2.2 Consensus size: 25
61260863 TTTTACCAAA
*
61260873 AGCGCCGC-TAATGCT-TCGATTTTT
1 AGCGGCGCTTAATGCTCT-GATTTTT
*
61260897 AGCGGCGCTTTAATGCTCTTATTTTT
1 AGCGGCGC-TTAATGCTCTGATTTTT
61260923 AGCGGC
1 AGCGGC
61260929 ATTTTACCAA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
24 7 0.26
26 19 0.70
27 1 0.04
ACGTcount: A:0.16, C:0.23, G:0.23, T:0.38
Consensus pattern (25 bp):
AGCGGCGCTTAATGCTCTGATTTTT
Found at i:61260948 original size:67 final size:67
Alignment explanation
Indices: 61260840--61260975 Score: 236
Period size: 67 Copynumber: 2.0 Consensus size: 67
61260830 AAAGCGCCGC
*
61260840 TAATGCTCTTATTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTTCGATTTTTAGCGGCGC
1 TAATGCTCTTATTTTTAGCGGCATTTTACCAAAAGCGCCGCTAATGCTTCGATTTTTAGCGGCGC
61260905 TT
66 TT
* * *
61260907 TAATGCTCTTATTTTTAGCGGCATTTTACCAAAAGTGCCGCTATTGCTTCGATTTTTAGCGGCGT
1 TAATGCTCTTATTTTTAGCGGCATTTTACCAAAAGCGCCGCTAATGCTTCGATTTTTAGCGGCGC
61260972 TT
66 TT
61260974 TA
1 TA
61260976 CCAAAAGCGC
Statistics
Matches: 65, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
67 65 1.00
ACGTcount: A:0.20, C:0.21, G:0.20, T:0.40
Consensus pattern (67 bp):
TAATGCTCTTATTTTTAGCGGCATTTTACCAAAAGCGCCGCTAATGCTTCGATTTTTAGCGGCGC
TT
Found at i:61261003 original size:108 final size:108
Alignment explanation
Indices: 61260810--61261016 Score: 328
Period size: 108 Copynumber: 1.9 Consensus size: 108
61260800 AACCCTAAAC
* *
61260810 TTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTTATTTTTAGCGGCGTTTTACCAAAAG
1 TTTTTAGCGGCATTTTACCAAAAGCGCCGCTAATGCTCTGATTTTTAGCGGCGTTTTACCAAAAG
61260875 CGCCGCTAATGCTTCGATTTTTAGCGGCGCTTTAATGCTCTTA
66 CGCCGCTAATGCTTCGATTTTTAGCGGCGCTTTAATGCTCTTA
* *
61260918 TTTTTAGCGGCATTTTACCAAAAGTGCCGCTATTGCT-TCGATTTTTAGCGGCGTTTTACCAAAA
1 TTTTTAGCGGCATTTTACCAAAAGCGCCGCTAATGCTCT-GATTTTTAGCGGCGTTTTACCAAAA
* *
61260982 GCGCCGCTAATGC-TCTTATTTTTAGCGGCGTTTTA
65 GCGCCGCTAATGCTTC-GATTTTTAGCGGCGCTTTA
61261017 CCAAAAGCGC
Statistics
Matches: 91, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
107 3 0.03
108 88 0.97
ACGTcount: A:0.20, C:0.22, G:0.20, T:0.37
Consensus pattern (108 bp):
TTTTTAGCGGCATTTTACCAAAAGCGCCGCTAATGCTCTGATTTTTAGCGGCGTTTTACCAAAAG
CGCCGCTAATGCTTCGATTTTTAGCGGCGCTTTAATGCTCTTA
Found at i:61261112 original size:40 final size:40
Alignment explanation
Indices: 61260910--61261127 Score: 285
Period size: 41 Copynumber: 5.3 Consensus size: 40
61260900 GGCGCTTTAA
* *
61260910 TGCTCTTATTTTTAGCGGCATTTTACCAAAAGTGCCGCTAT
1 TGCTC-TATTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAT
* *
61260951 TGCTTCGATTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAA
1 TGC-TCTATTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAT
*
61260992 TGCTCTTATTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAA
1 TGCTC-TATTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAT
*
61261033 TGCTCTTATTTTTAGCGGCGTTTTACCAAAAGCGACGCTAT
1 TGCTC-TATTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAT
* ***
61261074 TGCTCTGTTTTTAGCGGCGTTTTTGGTAAAA-CGCCGCTAT
1 TGCTCTATTTTTAGCGGCG-TTTTACCAAAAGCGCCGCTAT
61261114 TGCTCTATGTTTTA
1 TGCTCTAT-TTTTA
61261128 CAATTTTTTT
Statistics
Matches: 160, Mismatches: 13, Indels: 8
0.88 0.07 0.04
Matches are distributed among these distances:
40 30 0.19
41 128 0.80
42 2 0.01
ACGTcount: A:0.20, C:0.22, G:0.20, T:0.38
Consensus pattern (40 bp):
TGCTCTATTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAT
Found at i:61261365 original size:18 final size:18
Alignment explanation
Indices: 61261342--61261422 Score: 58
Period size: 18 Copynumber: 4.4 Consensus size: 18
61261332 AATGAGAGAC
61261342 AAAGAAATTGAAAAAGAA
1 AAAGAAATTGAAAAAGAA
** *
61261360 AAAGAAACCGAAAAAGGA
1 AAAGAAATTGAAAAAGAA
61261378 AAAGAGAA-TGAACGAAAGCAA
1 AAAGA-AATTGAA--AAAG-AA
* * *
61261399 AAAGAGATTGAGATA-AA
1 AAAGAAATTGAAAAAGAA
61261416 AAAGAAA
1 AAAGAAA
61261423 GTAAGCAAGA
Statistics
Matches: 49, Mismatches: 9, Indels: 11
0.71 0.13 0.16
Matches are distributed among these distances:
17 8 0.16
18 23 0.47
19 4 0.08
20 5 0.10
21 9 0.18
ACGTcount: A:0.67, C:0.05, G:0.21, T:0.07
Consensus pattern (18 bp):
AAAGAAATTGAAAAAGAA
Found at i:61264983 original size:79 final size:81
Alignment explanation
Indices: 61264848--61265031 Score: 225
Period size: 79 Copynumber: 2.3 Consensus size: 81
61264838 TGAATGATGT
*
61264848 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
*
61264912 GTGCGAGATACTA-ATT
66 GTGCGAGATACTATA-A
* * * * **
61264928 TCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCATT
*
61264990 TGTGCGAGTTACTATAA
65 TGTGCGAGATACTATAA
*
61265007 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
61265032 AACGAGTAGC
Statistics
Matches: 89, Mismatches: 11, Indels: 8
0.82 0.10 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.64
80 31 0.35
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (81 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTATAA
Found at i:61265038 original size:40 final size:40
Alignment explanation
Indices: 61264847--61265031 Score: 225
Period size: 40 Copynumber: 4.7 Consensus size: 40
61264837 TTGAATGATG
* * * *
61264847 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
61264887 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
61264927 TTCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
61264966 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
61265007 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
61265032 AACGAGTAGC
Statistics
Matches: 125, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
39 34 0.27
40 81 0.65
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:61265053 original size:79 final size:79
Alignment explanation
Indices: 61264900--61265064 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
61264890 GGACTAAGAT
** **
61264900 CCGAAGGCATTTGTGCGAGATACTAATTTCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
61264965 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
61264979 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
61265042 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
61265058 CCGAAGG
1 CCGAAGG
61265065 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 25 0.34
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:61266580 original size:20 final size:21
Alignment explanation
Indices: 61266545--61266583 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
61266535 TAGCTCATTG
61266545 AGCTCAATTCAGCTCGTTTCC
1 AGCTCAATTCAGCTCGTTTCC
*
61266566 AGCTCAA-TGAGCTCGTTT
1 AGCTCAATTCAGCTCGTTT
61266584 GCTCATTTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 10 0.59
21 7 0.41
ACGTcount: A:0.21, C:0.28, G:0.18, T:0.33
Consensus pattern (21 bp):
AGCTCAATTCAGCTCGTTTCC
Found at i:61269764 original size:27 final size:27
Alignment explanation
Indices: 61269708--61269793 Score: 75
Period size: 27 Copynumber: 3.2 Consensus size: 27
61269698 GCGTACCTGA
* * ***
61269708 ACCCTTACGTGATAAAATGACGATTTT
1 ACCCTTATGTGATAAAATGACCAAAAT
61269735 ACCCTTATGTGATAAAATGACCAAAAT
1 ACCCTTATGTGATAAAATGACCAAAAT
* * * *
61269762 ACCCTCATAG-GGTAAAATAACCGAAAT
1 ACCCTTAT-GTGATAAAATGACCAAAAT
61269789 ACCCT
1 ACCCT
61269794 CATAGGGTAG
Statistics
Matches: 49, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
27 48 0.98
28 1 0.02
ACGTcount: A:0.40, C:0.22, G:0.13, T:0.26
Consensus pattern (27 bp):
ACCCTTATGTGATAAAATGACCAAAAT
Found at i:61269794 original size:27 final size:27
Alignment explanation
Indices: 61269747--61269863 Score: 112
Period size: 27 Copynumber: 4.3 Consensus size: 27
61269737 CCTTATGTGA
*
61269747 TAAAATGACCAAAATACCCTCATAGGG
1 TAAAATGACCGAAATACCCTCATAGGG
*
61269774 TAAAATAACCGAAATACCCTCATAGGG
1 TAAAATGACCGAAATACCCTCATAGGG
* * *
61269801 TAGAATGATCGAAATACCC-CTGTAGGG
1 TAAAATGACCGAAATACCCTC-ATAGGG
* * * * *
61269828 TAAATTGACTGTAATACCC-CGGTAAGG
1 TAAAATGACCGAAATACCCTC-ATAGGG
61269855 TAAAATGAC
1 TAAAATGAC
61269864 AGATTTGTTC
Statistics
Matches: 75, Mismatches: 14, Indels: 2
0.82 0.15 0.02
Matches are distributed among these distances:
26 1 0.01
27 74 0.99
ACGTcount: A:0.40, C:0.20, G:0.19, T:0.21
Consensus pattern (27 bp):
TAAAATGACCGAAATACCCTCATAGGG
Found at i:61270235 original size:18 final size:18
Alignment explanation
Indices: 61270209--61270246 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
61270199 TCTTGTATAT
61270209 TGCACTGATTACTGTTAC
1 TGCACTGATTACTGTTAC
*
61270227 TGCATTGATTACTGTTAC
1 TGCACTGATTACTGTTAC
61270245 TG
1 TG
61270247 AAATGGGCTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.21, C:0.18, G:0.18, T:0.42
Consensus pattern (18 bp):
TGCACTGATTACTGTTAC
Found at i:61272104 original size:22 final size:21
Alignment explanation
Indices: 61272079--61272147 Score: 74
Period size: 21 Copynumber: 3.4 Consensus size: 21
61272069 AACGACTCTT
61272079 AAATGAAATTGAGAGAAGAAA-A
1 AAATGAAA-TGAGAGAA-AAAGA
61272101 AAATGAAATGAGAGAAAAAGA
1 AAATGAAATGAGAGAAAAAGA
*
61272122 AATTGAAA--AG-GAAAAAGA
1 AAATGAAATGAGAGAAAAAGA
*
61272140 AACTGAAA
1 AAATGAAA
61272148 AAGGAAAAGG
Statistics
Matches: 44, Mismatches: 2, Indels: 6
0.85 0.04 0.12
Matches are distributed among these distances:
18 15 0.34
19 2 0.05
20 3 0.07
21 16 0.36
22 8 0.18
ACGTcount: A:0.65, C:0.01, G:0.22, T:0.12
Consensus pattern (21 bp):
AAATGAAATGAGAGAAAAAGA
Found at i:61272135 original size:6 final size:6
Alignment explanation
Indices: 61272126--61272168 Score: 50
Period size: 6 Copynumber: 7.0 Consensus size: 6
61272116 AAAAGAAATT
* * *
61272126 GAAAAG GAAAAA GAAACTG AAAAAG GAAAAG GAAAAG GAAAAG
1 GAAAAG GAAAAG GAAA-AG GAAAAG GAAAAG GAAAAG GAAAAG
61272169 AGAATGAACG
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
6 27 0.90
7 3 0.10
ACGTcount: A:0.67, C:0.02, G:0.28, T:0.02
Consensus pattern (6 bp):
GAAAAG
Found at i:61272135 original size:18 final size:19
Alignment explanation
Indices: 61272114--61272160 Score: 69
Period size: 19 Copynumber: 2.5 Consensus size: 19
61272104 TGAAATGAGA
*
61272114 GAAAAAGAAATTG-AAAAG
1 GAAAAAGAAACTGAAAAAG
61272132 GAAAAAGAAACTGAAAAAG
1 GAAAAAGAAACTGAAAAAG
*
61272151 GAAAAGGAAA
1 GAAAAAGAAA
61272161 AGGAAAAGAG
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
18 12 0.46
19 14 0.54
ACGTcount: A:0.68, C:0.02, G:0.23, T:0.06
Consensus pattern (19 bp):
GAAAAAGAAACTGAAAAAG
Found at i:61272166 original size:19 final size:19
Alignment explanation
Indices: 61272114--61272167 Score: 56
Period size: 19 Copynumber: 2.9 Consensus size: 19
61272104 TGAAATGAGA
**
61272114 GAAAAAGAAATTG-AAAAG
1 GAAAAAGAAAAGGAAAAAG
**
61272132 GAAAAAGAAACTGAAAAAG
1 GAAAAAGAAAAGGAAAAAG
*
61272151 GAAAAGGAAAAGGAAAA
1 GAAAAAGAAAAGGAAAA
61272168 GAGAATGAAC
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
18 12 0.39
19 19 0.61
ACGTcount: A:0.69, C:0.02, G:0.24, T:0.06
Consensus pattern (19 bp):
GAAAAAGAAAAGGAAAAAG
Found at i:61278247 original size:47 final size:47
Alignment explanation
Indices: 61278156--61278518 Score: 541
Period size: 47 Copynumber: 7.6 Consensus size: 47
61278146 GTATATTTGA
* *
61278156 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTG
1 ATGAATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTG
* * * *
61278205 ATGAATGTGAAAGTGTATATATGTGATAAGACCTAATAGCCGATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTG
61278252 ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTG
61278299 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTG
1 ATGAATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTG
* *
61278348 ATGAATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTG
1 ATGAATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTG
* *
61278395 ATGAATGTGAACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTG
1 ATGAATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTG
61278442 ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTG
* * *
61278489 ATGGATGTGGAAGTGTATAAATGTGATAAG
1 ATGAATGTGAAAGTGTATATATGTGATAAG
61278519 TCCCGAAGGG
Statistics
Matches: 293, Mismatches: 17, Indels: 10
0.92 0.05 0.03
Matches are distributed among these distances:
46 1 0.00
47 231 0.79
49 60 0.20
50 1 0.00
ACGTcount: A:0.34, C:0.09, G:0.29, T:0.28
Consensus pattern (47 bp):
ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTG
Found at i:61278319 original size:143 final size:143
Alignment explanation
Indices: 61278156--61278518 Score: 563
Period size: 143 Copynumber: 2.6 Consensus size: 143
61278146 GTATATTTGA
* *
61278156 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
1 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGT
* * * *
61278221 ATATATGTGATAAGACCTAATAGCCGATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCC
66 ATATATGTGATAAGACCGAATAGCCAATGTGATGAATGTGAACA-TGCATATATGAGATAAGGCC
61278285 GAATGGCCAATGTG
130 GAATGGCCAATGTG
61278299 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TG
1 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-AGTG
* * * *
61278363 TGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGAGATAAGGCC
65 TATATATGTGATAAGACCGAATAGCCAATGTGATGAATGTGAACATGCATATATGAGATAAGGCC
61278428 GAATGGCCAATGTG
130 GAATGGCCAATGTG
* *
61278442 ATGAATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGGAAGTGT
1 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGT
*
61278505 ATAAATGTGATAAG
66 ATATATGTGATAAG
61278519 TCCCGAAGGG
Statistics
Matches: 202, Mismatches: 15, Indels: 8
0.90 0.07 0.04
Matches are distributed among these distances:
140 1 0.00
141 55 0.27
143 144 0.71
144 2 0.01
ACGTcount: A:0.34, C:0.09, G:0.29, T:0.28
Consensus pattern (143 bp):
ATGAATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGT
ATATATGTGATAAGACCGAATAGCCAATGTGATGAATGTGAACATGCATATATGAGATAAGGCCG
AATGGCCAATGTG
Found at i:61290866 original size:33 final size:31
Alignment explanation
Indices: 61290780--61290876 Score: 106
Period size: 34 Copynumber: 3.0 Consensus size: 31
61290770 TTTCAGTTAA
*
61290780 GGCCTTAGCCCA-TACCAGTAACAGTAGCAGTCTG
1 GGCCTAAGCCCATTA-CAGTAACAGTA-CAG--TG
* *
61290814 GGCCTGAGCCCATTTCAGTAACAGTATCAGTG
1 GGCCTAAGCCCATTACAGTAACAGTA-CAGTG
61290846 GGACCTAAGCCCATTACAGTAACAGTACAGT
1 GG-CCTAAGCCCATTACAGTAACAGTACAGT
61290877 ATGCAATCAA
Statistics
Matches: 56, Mismatches: 5, Indels: 6
0.84 0.07 0.09
Matches are distributed among these distances:
32 8 0.14
33 22 0.39
34 25 0.45
35 1 0.02
ACGTcount: A:0.29, C:0.27, G:0.23, T:0.22
Consensus pattern (31 bp):
GGCCTAAGCCCATTACAGTAACAGTACAGTG
Found at i:61299927 original size:59 final size:61
Alignment explanation
Indices: 61299864--61299980 Score: 175
Period size: 62 Copynumber: 1.9 Consensus size: 61
61299854 ATTATTTTAA
* * * *
61299864 TATTAAATTAATATAATATTTA-T-CAAGATAAATATTAGATTAAATTTAATATTAAATCT
1 TATTAAATTAATAGAATATTTACTACAAGATAAACATGAAATTAAATTTAATATTAAATCT
61299923 TATTAAATTAATAGAATATTTATCTACAAGATAAACATGAAATTAAATTTAATATTAA
1 TATTAAATTAATAGAATATTTA-CTACAAGATAAACATGAAATTAAATTTAATATTAA
61299981 GATAATCACT
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
59 21 0.41
61 1 0.02
62 29 0.57
ACGTcount: A:0.50, C:0.04, G:0.04, T:0.41
Consensus pattern (61 bp):
TATTAAATTAATAGAATATTTACTACAAGATAAACATGAAATTAAATTTAATATTAAATCT
Found at i:61300418 original size:19 final size:18
Alignment explanation
Indices: 61300394--61300444 Score: 75
Period size: 19 Copynumber: 2.7 Consensus size: 18
61300384 AAAATATCAT
61300394 ATTAATTTTAATTAATTTG
1 ATTAA-TTTAATTAATTTG
61300413 ATTAATTTAATTTAATTTG
1 ATTAATTTAA-TTAATTTG
61300432 ATTAAATTTAATT
1 ATT-AATTTAATT
61300445 TTCTCAAAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
18 5 0.17
19 18 0.60
20 7 0.23
ACGTcount: A:0.39, C:0.00, G:0.04, T:0.57
Consensus pattern (18 bp):
ATTAATTTAATTAATTTG
Found at i:61300424 original size:5 final size:5
Alignment explanation
Indices: 61300395--61300445 Score: 52
Period size: 5 Copynumber: 10.4 Consensus size: 5
61300385 AAATATCATA
* * *
61300395 TTAATT TTAA- TTAAT TTGA- TTAAT TTAAT TTAAT TTGAT TAAAT TTAAT
1 TTAA-T TTAAT TTAAT TTAAT TTAAT TTAAT TTAAT TTAAT TTAAT TTAAT
61300444 TT
1 TT
61300446 TCTCAAAAAT
Statistics
Matches: 37, Mismatches: 6, Indels: 5
0.77 0.12 0.10
Matches are distributed among these distances:
4 7 0.19
5 26 0.70
6 4 0.11
ACGTcount: A:0.37, C:0.00, G:0.04, T:0.59
Consensus pattern (5 bp):
TTAAT
Found at i:61304576 original size:39 final size:40
Alignment explanation
Indices: 61304531--61304698 Score: 106
Period size: 40 Copynumber: 4.2 Consensus size: 40
61304521 CGGGGTTTAG
* * *
61304531 CCGGATATAACCACTCGCA-CAAGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
*** * *
61304570 CCGGATATGGTCACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
** * * * **
61304610 CCGGATATAGTCGCTAGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGA-CTTAAC
* ** * * * *
61304650 CCGGATGTAGTCGCTTAGCACAAAAGCCTTCGGGACTTAGC
1 CCGGATATAACCAC-TAGCATAAAGGCCTTCGGGACTTAAC
61304691 CCGGATAT
1 CCGGATAT
61304699 CATTCGAGTA
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
39 18 0.17
40 61 0.56
41 27 0.25
42 3 0.03
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (40 bp):
CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
Found at i:61304681 original size:41 final size:40
Alignment explanation
Indices: 61304554--61304698 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
61304544 CTCGCACAAG
* * * * *
61304554 GCCTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
61304594 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* * *
61304634 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
61304675 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
61304699 CATTCGAGTA
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 3 0.03
40 59 0.64
41 27 0.29
42 3 0.03
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:61305930 original size:38 final size:38
Alignment explanation
Indices: 61305888--61305963 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
61305878 CAAGAACTCC
61305888 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
1 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
61305926 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
1 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
61305964 AAAGGATGAA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.32, C:0.24, G:0.13, T:0.32
Consensus pattern (38 bp):
TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
Found at i:61312627 original size:39 final size:40
Alignment explanation
Indices: 61312582--61312692 Score: 98
Period size: 40 Copynumber: 2.8 Consensus size: 40
61312572 CGGGGTTTAG
* * *
61312582 CCGGATATAACCACTCGCA-CAAGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
*** * *
61312621 CCGGATATGGTCACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
** * * *
61312661 CCGGATATAGTCGCTAGCACAAATGCCTTCGG
1 CCGGATATAACCACTAGCATAAAGGCCTTCGG
61312693 ATCTTAGTCC
Statistics
Matches: 60, Mismatches: 11, Indels: 1
0.83 0.15 0.01
Matches are distributed among these distances:
39 15 0.25
40 45 0.75
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
Found at i:61312652 original size:40 final size:39
Alignment explanation
Indices: 61312605--61312748 Score: 182
Period size: 40 Copynumber: 3.6 Consensus size: 39
61312595 CTCGCACAAG
* * * *
61312605 GCCTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATAT-GTCGCTAGCACAAAT
61312645 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATAT-GTCGCTAGCACAAAT
* * *
61312685 GCCTTC-GGATCTTAGTCCGGATGTGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATGTCGC-TAGCACAAAT
61312725 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
61312749 CATTCGAGTA
Statistics
Matches: 91, Mismatches: 10, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
39 8 0.09
40 80 0.88
41 3 0.03
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.26
Consensus pattern (39 bp):
GCCTTCGGGACTTAGCCCGGATATGTCGCTAGCACAAAT
Found at i:61337848 original size:48 final size:48
Alignment explanation
Indices: 61337791--61338059 Score: 235
Period size: 48 Copynumber: 5.6 Consensus size: 48
61337781 TGTGTGCCAC
* *
61337791 TGTAAGACCATATTTGGAACATGGCATCGGCCACGATATGAGAACCAG
1 TGTAAGACCATGTTTGGAACATGGCATCGGCCATGATATGAGAACCAG
* * *
61337839 TGTAAGACCATGTTTGGAACATGGCATTGGCAATG-TAATGAGATCCAG
1 TGTAAGACCATGTTTGGAACATGGCATCGGCCATGAT-ATGAGAACCAG
* * ** *
61337887 TGTAAGACCATGTTTGGGACATGGCATCGG-CATTGATATGTGGGCTAG
1 TGTAAGACCATGTTTGGAACATGGCATCGGCCA-TGATATGAGAACCAG
* * * * * * *
61337935 TGTAAGACTATGTCTGTG-ACATGGCATCAG-TATTGAGACGA-AAGCTAG
1 TGTAAGACCATGTTTG-GAACATGGCATCGGCCA-TGATATGAGAA-CCAG
* * * * *
61337983 TGTAAGACCATGTTTGGAACATGCCATCGGCC-TCGACATGTGAGCCAA
1 TGTAAGACCATGTTTGGAACATGGCATCGGCCAT-GATATGAGAACCAG
*
61338031 TGTAAGACCATGTTTGGAAGATGGCATCG
1 TGTAAGACCATGTTTGGAACATGGCATCG
61338060 ATAATTCACC
Statistics
Matches: 178, Mismatches: 34, Indels: 18
0.77 0.15 0.08
Matches are distributed among these distances:
47 4 0.02
48 171 0.96
49 3 0.02
ACGTcount: A:0.29, C:0.17, G:0.28, T:0.26
Consensus pattern (48 bp):
TGTAAGACCATGTTTGGAACATGGCATCGGCCATGATATGAGAACCAG
Found at i:61338055 original size:96 final size:96
Alignment explanation
Indices: 61337786--61338058 Score: 298
Period size: 96 Copynumber: 2.8 Consensus size: 96
61337776 TGATATGTGT
* * * * *
61337786 GCCACTGTAAGACCATATTTGGAACATGGCATCGGCCACGATATGAGAACCAGTGTAAGACCATG
1 GCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCCTCGATATGTGAGCCAGTGTAAGACCATG
** * *
61337851 TTTGGAACATGGCATTGGCAATGTAATGAGA
66 TTTGGAACATGGCATCAGCAATGTAACGAAA
* * * * * * *
61337882 TCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCATTGATATGTGGGCTAGTGTAAGACTATG
1 GCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCCTCGATATGTGAGCCAGTGTAAGACCATG
* * *
61337947 TCTGTG-ACATGGCATCAGTATTG-AGACGAAA
66 TTTG-GAACATGGCATCAGCAATGTA-ACGAAA
* * * *
61337978 GCTAGTGTAAGACCATGTTTGGAACATGCCATCGGCCTCGACATGTGAGCCAATGTAAGACCATG
1 GCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCCTCGATATGTGAGCCAGTGTAAGACCATG
*
61338043 TTTGGAAGATGGCATC
66 TTTGGAACATGGCATC
61338059 GATAATTCAC
Statistics
Matches: 142, Mismatches: 32, Indels: 6
0.79 0.18 0.03
Matches are distributed among these distances:
95 2 0.01
96 139 0.98
97 1 0.01
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.25
Consensus pattern (96 bp):
GCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCCTCGATATGTGAGCCAGTGTAAGACCATG
TTTGGAACATGGCATCAGCAATGTAACGAAA
Found at i:61339124 original size:28 final size:28
Alignment explanation
Indices: 61339084--61339177 Score: 179
Period size: 28 Copynumber: 3.4 Consensus size: 28
61339074 CACACGAGCT
61339084 GAGACACGGGCTAGTCATGGCCATGTGG
1 GAGACACGGGCTAGTCATGGCCATGTGG
61339112 GAGACACGGGCTAGTCATGGCCATGTGG
1 GAGACACGGGCTAGTCATGGCCATGTGG
*
61339140 GAGACACGGGCTAGTCATGGCCGTGTGG
1 GAGACACGGGCTAGTCATGGCCATGTGG
61339168 GAGACACGGG
1 GAGACACGGG
61339178 TCATGGACAC
Statistics
Matches: 65, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
28 65 1.00
ACGTcount: A:0.21, C:0.21, G:0.41, T:0.16
Consensus pattern (28 bp):
GAGACACGGGCTAGTCATGGCCATGTGG
Found at i:61341534 original size:40 final size:40
Alignment explanation
Indices: 61341483--61341696 Score: 290
Period size: 40 Copynumber: 5.4 Consensus size: 40
61341473 CGATAACCGA
* * * *
61341483 GCTAAGTCCCGAAGGCATTTGCGCTAATTACTAGT-TCCGA
1 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TATCCGG
61341523 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGG
1 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGG
* *
61341563 GCTAAGTCCCGAAGGCAATTGTGCGAGTTACTATATCTGG
1 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGG
*
61341603 GCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATATCCGG
1 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGG
* *
61341643 GCTATGTCCCGAAGGCATTTGAGCGAG-TAGCTATATCC-G
1 GCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGG
* *
61341682 GTTAAATCCCGAAGG
1 GCTAAGTCCCGAAGG
61341697 TACTTGGCTT
Statistics
Matches: 157, Mismatches: 15, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
39 16 0.10
40 141 0.90
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGG
Found at i:61349650 original size:40 final size:39
Alignment explanation
Indices: 61349567--61349780 Score: 294
Period size: 40 Copynumber: 5.5 Consensus size: 39
61349557 TTGGAGATAA
*
61349567 CCGGGCTAAGTCCCGAAGGCATT-TGCG-CTTACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTGTGCGAGTTACTA-TAT
*
61349604 CCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCA-TTGTGCGAGTTACTATAT
61349644 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGC-ATTGTGCGAGTTACTATAT
61349684 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATT-GTGCGAGTTACTATAT
* *
61349724 CCGGGCTATGTCCCGAAGGCATTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTGTGCGAGTTA-CTATAT
* *
61349763 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
61349781 TACTTGGCTT
Statistics
Matches: 162, Mismatches: 8, Indels: 13
0.89 0.04 0.07
Matches are distributed among these distances:
37 20 0.12
38 17 0.10
39 22 0.14
40 102 0.63
41 1 0.01
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTGTGCGAGTTACTATAT
Found at i:61356808 original size:39 final size:40
Alignment explanation
Indices: 61356661--61356877 Score: 255
Period size: 40 Copynumber: 5.5 Consensus size: 40
61356651 CGGACGATAA
* *
61356661 CCGGGCTAAGTCCCGAAGGCATTTGCT-CTAATTACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTG-TGCGAGTTACTA-TAT
** * *
61356701 TTGGGCTAAGTCTCGAAGGCATTTGTCCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
61356741 CCAGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
61356781 CCGGGCTAAGT-CCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
61356820 CCGGGCTATGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
61356860 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
61356878 TACTTGGCTT
Statistics
Matches: 153, Mismatches: 20, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
39 53 0.35
40 100 0.65
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:61356833 original size:79 final size:80
Alignment explanation
Indices: 61356703--61356863 Score: 245
Period size: 79 Copynumber: 2.0 Consensus size: 80
61356693 TACTAGTTTT
* *
61356703 GGGCTAAGTCTCGAAGGCATTTGTCCGAGTTACTATATCCAGGCTAAGTCCCGAAGGCAATTGTG
1 GGGCTAAGTCTCGAAGGCATTGGTCCGAGTTACTATATCCAGGCTAAGTCCCGAAGGCAATTGAG
61356768 CGAGTTA-CTATATCC
66 CGAG-TAGCTATATCC
* * * *
61356783 GGGCTAAGTC-CGAAGGCATTGGTGCGAGTTACTATATCCGGGCTATGTCCCGAAGGCATTTGAG
1 GGGCTAAGTCTCGAAGGCATTGGTCCGAGTTACTATATCCAGGCTAAGTCCCGAAGGCAATTGAG
61356847 CGAGTAGCTATATCC
66 CGAGTAGCTATATCC
61356862 GG
1 GG
61356864 TTAAATCCCG
Statistics
Matches: 74, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
78 2 0.03
79 62 0.84
80 10 0.14
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.26
Consensus pattern (80 bp):
GGGCTAAGTCTCGAAGGCATTGGTCCGAGTTACTATATCCAGGCTAAGTCCCGAAGGCAATTGAG
CGAGTAGCTATATCC
Found at i:61362490 original size:47 final size:49
Alignment explanation
Indices: 61362373--61362551 Score: 171
Period size: 46 Copynumber: 3.8 Consensus size: 49
61362363 TGTAACCCGC
* * *
61362373 CCATAAGCGAACTCGGACTCAACTCAACGAGCTC--A-GGC-GTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCAGTT-ACAT
* * *
61362419 CCATGAGTGAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCC-AGTTACAT
* * *
61362469 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGG--G-CATTTGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCAGTTACAT
* *
61362512 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGC
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGC
61362552 TCAACCATCC
Statistics
Matches: 108, Mismatches: 14, Indels: 19
0.77 0.10 0.13
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 3 0.03
46 57 0.53
47 27 0.25
48 4 0.04
49 3 0.03
50 3 0.03
51 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (49 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCAGTTACAT
Found at i:61362539 original size:93 final size:93
Alignment explanation
Indices: 61362380--61362551 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
61362370 CGCCCATAAG
* *
61362380 CGAACTCGGACTCAACTCAACGAGCTCAGGCGTTCGCATCCATGAGTGAACTCAGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCAGGCATTCGCATCCATAAGTGAACTCAGACTCAACTCA
*
61362445 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGCTCGGATGCCTAGTTACATCTCA
* * * *
61362473 CGAACTCGGACTCAACTCAACGAGTTCGGGCATTTGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCAGGCATTCGCATCCATAAGTGAACTCAGACTCAACTCA
61362538 ACGAGCTCGGATGC
66 ACGAGCTCGGATGC
61362552 TCAACCATCC
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCAGGCATTCGCATCCATAAGTGAACTCAGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCA
Found at i:61366282 original size:32 final size:32
Alignment explanation
Indices: 61366244--61366308 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
61366234 GTAAATAAAG
61366244 ATAAATTTAGTATTTTGAAATTAATTAATTTA
1 ATAAATTTAGTATTTTGAAATTAATTAATTTA
61366276 ATAAATTTAGTATTTTGAAATTAATTAATTTA
1 ATAAATTTAGTATTTTGAAATTAATTAATTTA
61366308 A
1 A
61366309 ATACAAATAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.45, C:0.00, G:0.06, T:0.49
Consensus pattern (32 bp):
ATAAATTTAGTATTTTGAAATTAATTAATTTA
Found at i:61366333 original size:14 final size:14
Alignment explanation
Indices: 61366286--61366333 Score: 51
Period size: 15 Copynumber: 3.3 Consensus size: 14
61366276 ATAAATTTAG
*
61366286 TATTTTGAAATTAAT
1 TATTTT-AAATAAAT
* *
61366301 TAATTTAAATACAAA
1 TATTTTAAATA-AAT
61366316 TATTTTAAATAAAT
1 TATTTTAAATAAAT
61366330 TATT
1 TATT
61366334 ATATTTCATT
Statistics
Matches: 27, Mismatches: 5, Indels: 3
0.77 0.14 0.09
Matches are distributed among these distances:
14 10 0.37
15 17 0.63
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (14 bp):
TATTTTAAATAAAT
Found at i:61378820 original size:93 final size:93
Alignment explanation
Indices: 61378708--61378877 Score: 295
Period size: 93 Copynumber: 1.8 Consensus size: 93
61378698 GCCCATAAGT
* * *
61378708 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
61378773 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
*
61378801 GAACTCGGACTCAACTCAACGAGTTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
*
61378866 CGAGTTCGGATG
66 CGAGCTCGGATG
61378878 TCCAAACATC
Statistics
Matches: 72, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:61378875 original size:46 final size:46
Alignment explanation
Indices: 61378700--61378875 Score: 209
Period size: 46 Copynumber: 3.8 Consensus size: 46
61378690 TGTAACCCGC
* * *
61378700 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCACAT
61378746 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA---C-A-TTCACAT
* *
61378796 CTC-T---CGAACTCGGACTCAACTCAACGAGTTCGGACATTCACAT
1 C-CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCACAT
*
61378839 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
61378876 TGTCCAAACA
Statistics
Matches: 113, Mismatches: 6, Indels: 22
0.80 0.04 0.16
Matches are distributed among these distances:
42 3 0.03
43 7 0.06
44 1 0.01
46 65 0.58
47 28 0.25
49 1 0.01
50 5 0.04
51 3 0.03
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCACAT
Found at i:61380226 original size:50 final size:49
Alignment explanation
Indices: 61380164--61380258 Score: 163
Period size: 50 Copynumber: 1.9 Consensus size: 49
61380154 TAAATCAGGA
*
61380164 TATTACATGTGAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTACGTT
1 TATTACATGTGAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTT
*
61380213 TATTAGATGGTGAGGTCACATGTGTAGTACTAAGTGCAGGCTACTA
1 TATTACAT-GTGAGGTCACATGTGTAGTACTAAGTGCAGGCTACTA
61380259 TGCATACCAG
Statistics
Matches: 43, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
49 7 0.16
50 36 0.84
ACGTcount: A:0.26, C:0.15, G:0.27, T:0.32
Consensus pattern (49 bp):
TATTACATGTGAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTT
Found at i:61388985 original size:23 final size:23
Alignment explanation
Indices: 61388916--61388987 Score: 90
Period size: 23 Copynumber: 3.1 Consensus size: 23
61388906 TTCTTCCAAT
* *
61388916 GGTTTTGTCTACTTTTATGGCAC
1 GGTTATGTCTACTTTTATAGCAC
** * *
61388939 AATTATGTCTGCTTCTATAGCAC
1 GGTTATGTCTACTTTTATAGCAC
61388962 GGTTATGTCTACTTTTATAGCAC
1 GGTTATGTCTACTTTTATAGCAC
61388985 GGT
1 GGT
61388988 AGTTTGGATT
Statistics
Matches: 39, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
23 39 1.00
ACGTcount: A:0.19, C:0.18, G:0.19, T:0.43
Consensus pattern (23 bp):
GGTTATGTCTACTTTTATAGCAC
Found at i:61389250 original size:29 final size:29
Alignment explanation
Indices: 61389208--61389264 Score: 87
Period size: 29 Copynumber: 2.0 Consensus size: 29
61389198 GTTAAGCACC
*
61389208 GTGGCGGGTCGGGTGGACTTGAAATCACT
1 GTGGCGGGTCGGGTGGACTTCAAATCACT
* *
61389237 GTGGTGGGTTGGGTGGACTTCAAATCAC
1 GTGGCGGGTCGGGTGGACTTCAAATCAC
61389265 CAAGGATGTT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.18, C:0.16, G:0.40, T:0.26
Consensus pattern (29 bp):
GTGGCGGGTCGGGTGGACTTCAAATCACT
Found at i:61397203 original size:26 final size:26
Alignment explanation
Indices: 61397166--61397235 Score: 104
Period size: 26 Copynumber: 2.7 Consensus size: 26
61397156 ACATTCTAAC
* *
61397166 TCACACCTCGTGTGAGCAGGCACATT
1 TCACAGCTCGTGTGAGCAGACACATT
* *
61397192 TCATAGCTCGTGTGAGCAGACCCATT
1 TCACAGCTCGTGTGAGCAGACACATT
61397218 TCACAGCTCGTGTGAGCA
1 TCACAGCTCGTGTGAGCA
61397236 TTATTGAAAA
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 39 1.00
ACGTcount: A:0.23, C:0.29, G:0.24, T:0.24
Consensus pattern (26 bp):
TCACAGCTCGTGTGAGCAGACACATT
Found at i:61405107 original size:21 final size:21
Alignment explanation
Indices: 61405083--61405163 Score: 67
Period size: 21 Copynumber: 3.9 Consensus size: 21
61405073 TAAGATCGAG
61405083 GGTTTAAGGTCCAAGGTCTAA
1 GGTTTAAGGTCCAAGGTCTAA
** *
61405104 GGTTTACTGTCCATA-GTCTAG
1 GGTTTAAGGTCCA-AGGTCTAA
*
61405125 GGTCT-AGAGTCCAAGGTCTAA
1 GGTTTAAG-GTCCAAGGTCTAA
* * *
61405146 AGTTAAAGGTCTAAGGTC
1 GGTTTAAGGTCCAAGGTC
61405164 CAAAATCTAA
Statistics
Matches: 45, Mismatches: 11, Indels: 8
0.70 0.17 0.12
Matches are distributed among these distances:
20 1 0.02
21 41 0.91
22 3 0.07
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.30
Consensus pattern (21 bp):
GGTTTAAGGTCCAAGGTCTAA
Found at i:61409151 original size:17 final size:18
Alignment explanation
Indices: 61409121--61409157 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
61409111 CATCAACATC
61409121 TGATATTCCAGAAGCTGG
1 TGATATTCCAGAAGCTGG
*
61409139 TGATATT-CAGAAGGTGG
1 TGATATTCCAGAAGCTGG
61409156 TG
1 TG
61409158 GACCTTGTGT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 11 0.61
18 7 0.39
ACGTcount: A:0.27, C:0.11, G:0.32, T:0.30
Consensus pattern (18 bp):
TGATATTCCAGAAGCTGG
Found at i:61416882 original size:85 final size:85
Alignment explanation
Indices: 61416735--61416911 Score: 264
Period size: 85 Copynumber: 2.1 Consensus size: 85
61416725 GGTCACACGA
** * * * *
61416735 CCGTGTGGCCAGGCCGTGTGCCTCATACGGCTGAGACACATGCCCATGTCTCAAGCTATGTAACA
1 CCGTGTGGCCAAACCGTGTGCCTCACACGACTGAGACACACGCCCATGTCTCAAGCCATGTAACA
61416800 TTCGAAATAGCCCCACATGC
66 TTCGAAATAGCCCCACATGC
* * *
61416820 CCGTGTGGCCAAATCGTGTGCCTCACACGACTGAGACACACGCCCGTGTCTCAAGCCGTGTAACA
1 CCGTGTGGCCAAACCGTGTGCCTCACACGACTGAGACACACGCCCATGTCTCAAGCCATGTAACA
*
61416885 TTTGAAATAGCCCCACATGC
66 TTCGAAATAGCCCCACATGC
61416905 CCGTGTG
1 CCGTGTG
61416912 ATAGGCCGTG
Statistics
Matches: 82, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
85 82 1.00
ACGTcount: A:0.23, C:0.32, G:0.24, T:0.21
Consensus pattern (85 bp):
CCGTGTGGCCAAACCGTGTGCCTCACACGACTGAGACACACGCCCATGTCTCAAGCCATGTAACA
TTCGAAATAGCCCCACATGC
Found at i:61418505 original size:36 final size:35
Alignment explanation
Indices: 61418431--61418596 Score: 194
Period size: 36 Copynumber: 4.8 Consensus size: 35
61418421 CAATCCAACC
* * *
61418431 AAAACACA-C-ATGCTCATAAGAACCAATCTGTC-
1 AAAACACACCAATGCTCATAAGAGCTAATCTCTCA
* *
61418463 CAAACACACCAATGCTCGTAAAGAGCTAATCTCTCA
1 AAAACACACCAATGCTCAT-AAGAGCTAATCTCTCA
*
61418499 AAAACACACCAATGCTCGTAAAGAGCTAATCTCTCA
1 AAAACACACCAATGCTCAT-AAGAGCTAATCTCTCA
* * * *
61418535 AAAACACACCAATGCTCATAAGAGTTAATCCCACC
1 AAAACACACCAATGCTCATAAGAGCTAATCTCTCA
*
61418570 AAAACACACCAATACTCATAAGAGCTA
1 AAAACACACCAATGCTCATAAGAGCTA
61418597 GTCCAACTGA
Statistics
Matches: 117, Mismatches: 13, Indels: 5
0.87 0.10 0.04
Matches are distributed among these distances:
32 7 0.06
33 1 0.01
34 7 0.06
35 49 0.42
36 53 0.45
ACGTcount: A:0.43, C:0.29, G:0.10, T:0.18
Consensus pattern (35 bp):
AAAACACACCAATGCTCATAAGAGCTAATCTCTCA
Found at i:61418574 original size:35 final size:35
Alignment explanation
Indices: 61418422--61418616 Score: 171
Period size: 35 Copynumber: 5.6 Consensus size: 35
61418412 GTACATCGAC
* * *
61418422 AATCCAACCAAAACACA-C-ATGCTCATAAGAACC
1 AATCCCACCAAAACACACCAATGCTCATAAGAGCT
*** *
61418455 AATCTGTCC-AAACACACCAATGCTCGTAAAGAGCT
1 AATCCCACCAAAACACACCAATGCTCAT-AAGAGCT
* * * *
61418490 AATCTCTCAAAAACACACCAATGCTCGTAAAGAGCT
1 AATCCCACCAAAACACACCAATGCTCAT-AAGAGCT
* * * *
61418526 AATCTCTCAAAAACACACCAATGCTCATAAGAGTT
1 AATCCCACCAAAACACACCAATGCTCATAAGAGCT
*
61418561 AATCCCACCAAAACACACCAATACTCATAAGAGCT
1 AATCCCACCAAAACACACCAATGCTCATAAGAGCT
* * **
61418596 AGTCCAACTGAAACACACCAA
1 AATCCCACCAAAACACACCAA
61418617 ACAGAGAGTA
Statistics
Matches: 139, Mismatches: 19, Indels: 6
0.85 0.12 0.04
Matches are distributed among these distances:
32 7 0.05
33 7 0.05
34 7 0.05
35 65 0.47
36 53 0.38
ACGTcount: A:0.44, C:0.30, G:0.09, T:0.17
Consensus pattern (35 bp):
AATCCCACCAAAACACACCAATGCTCATAAGAGCT
Found at i:61418575 original size:71 final size:70
Alignment explanation
Indices: 61418422--61418596 Score: 203
Period size: 71 Copynumber: 2.5 Consensus size: 70
61418412 GTACATCGAC
* * * * * *
61418422 AATCCAACCAAAACACA-C-ATGCTCATAAGAACCAATCTGTCCAAACACACCAATGCTCGTAAA
1 AATCCCACCAAAACACACCAATGCTCATAAGAGCTAATCTCTCAAAACACACCAATGCTCATAAA
61418485 GAGCT
66 GAGCT
* * * *
61418490 AATCTCTCAAAAACACACCAATGCTCGTAAAGAGCTAATCTCTCAAAAACACACCAATGCTCAT-
1 AATCCCACCAAAACACACCAATGCTCAT-AAGAGCTAATCTCTC-AAAACACACCAATGCTCATA
*
61418554 AAGAGTT
64 AAGAGCT
*
61418561 AATCCCACCAAAACACACCAATACTCATAAGAGCTA
1 AATCCCACCAAAACACACCAATGCTCATAAGAGCTA
61418597 GTCCAACTGA
Statistics
Matches: 87, Mismatches: 16, Indels: 6
0.80 0.15 0.06
Matches are distributed among these distances:
68 13 0.15
69 1 0.01
70 15 0.17
71 41 0.47
72 17 0.20
ACGTcount: A:0.43, C:0.30, G:0.09, T:0.18
Consensus pattern (70 bp):
AATCCCACCAAAACACACCAATGCTCATAAGAGCTAATCTCTCAAAACACACCAATGCTCATAAA
GAGCT
Found at i:61422252 original size:42 final size:42
Alignment explanation
Indices: 61422147--61422312 Score: 135
Period size: 42 Copynumber: 4.0 Consensus size: 42
61422137 ATCTGATATG
* * * *
61422147 TGATTTCGTGTAAGATCAC-GTTTGGGACGTTGGCATC-T-TT
1 TGATTTCATGTAAGA-CCCTGTCTGGGACATTGGCATCGTATT
* * *
61422187 TGTTTTACATGTAAGACCATGTCTGGGACATTGGCATCGTATC
1 TGATTT-CATGTAAGACCCTGTCTGGGACATTGGCATCGTATT
* * * *
61422230 TGGTTTCATGTAAGACCCTGTCTAGGACAGTGGCATCGATGTT
1 TGATTTCATGTAAGACCCTGTCTGGGACATTGGCATCG-TATT
* * *
61422273 TGATTACAT-TAAGACCAC-GTCTGGGACGTTGGCATTGTAT
1 TGATTTCATGTAAGACC-CTGTCTGGGACATTGGCATCGTAT
61422313 ATGTTCTTTA
Statistics
Matches: 100, Mismatches: 20, Indels: 11
0.76 0.15 0.08
Matches are distributed among these distances:
40 6 0.06
41 26 0.26
42 52 0.52
43 16 0.16
ACGTcount: A:0.22, C:0.17, G:0.26, T:0.35
Consensus pattern (42 bp):
TGATTTCATGTAAGACCCTGTCTGGGACATTGGCATCGTATT
Found at i:61427355 original size:40 final size:40
Alignment explanation
Indices: 61427295--61427412 Score: 148
Period size: 40 Copynumber: 2.9 Consensus size: 40
61427285 GAAATATGAA
* *
61427295 TGTGCTAAGCGACTACATCCGGACTAAGATCCGAAGGCATT
1 TGTGCT-AGCGACTATATCCGGGCTAAGATCCGAAGGCATT
61427336 TGTGCTAGCGACTATATCCGGGCTAAG-TCCCGAAGGCATT
1 TGTGCTAGCGACTATATCCGGGCTAAGAT-CCGAAGGCATT
* * * * *
61427376 TATGCTAGTGACCATATCCGGGTTAAGACCCGAAGGC
1 TGTGCTAGCGACTATATCCGGGCTAAGATCCGAAGGC
61427413 CTTGTGCGAG
Statistics
Matches: 68, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
39 1 0.01
40 61 0.90
41 6 0.09
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (40 bp):
TGTGCTAGCGACTATATCCGGGCTAAGATCCGAAGGCATT
Found at i:61434394 original size:146 final size:146
Alignment explanation
Indices: 61434129--61434421 Score: 532
Period size: 146 Copynumber: 2.0 Consensus size: 146
61434119 TCTAACACTC
*
61434129 TTTCCAGTCCAAACTCATTTTCCTAACATGGTGATAAGCTAACTGATTGGATGCCCTATCCTATT
1 TTTCCAGTCCAAACTCATTTTCCTAACATGATGATAAGCTAACTGATTGGATGCCCTATCCTATT
* *
61434194 AACCCCTATGGTCCATCATGCGATTACCTAGTCCTGGTTAAATATCCTTTCTTACTATAGATGTC
66 AACCCCTATGGTCCATCATGCGATTACCTAGTCCTGGTCAAATATCCTTCCTTACTATAGATGTC
61434259 CGATAGACTTTACCAG
131 CGATAGACTTTACCAG
*
61434275 TTTCCAGTCCAAACTCATTTTCCTAACATGATGATAAGCTAACTGATTGGATGCCCTATCTTATT
1 TTTCCAGTCCAAACTCATTTTCCTAACATGATGATAAGCTAACTGATTGGATGCCCTATCCTATT
* *
61434340 AACCCTTGTGGTCCATCATGCGATTACCTAGTCCTGGTCAAATATCCTTCCTTACTATAGATGTC
66 AACCCCTATGGTCCATCATGCGATTACCTAGTCCTGGTCAAATATCCTTCCTTACTATAGATGTC
61434405 CGATAGACTTTACCAG
131 CGATAGACTTTACCAG
61434421 T
1 T
61434422 CCAACCATTT
Statistics
Matches: 141, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
146 141 1.00
ACGTcount: A:0.26, C:0.25, G:0.14, T:0.34
Consensus pattern (146 bp):
TTTCCAGTCCAAACTCATTTTCCTAACATGATGATAAGCTAACTGATTGGATGCCCTATCCTATT
AACCCCTATGGTCCATCATGCGATTACCTAGTCCTGGTCAAATATCCTTCCTTACTATAGATGTC
CGATAGACTTTACCAG
Found at i:61434943 original size:68 final size:68
Alignment explanation
Indices: 61434860--61435105 Score: 307
Period size: 68 Copynumber: 3.6 Consensus size: 68
61434850 CGTCCTAGCA
* * * * * ** ***
61434860 GACTCTATTGGTTGTCATAGATGAGCTATGGT-TCTACACCTTGGAAACTCATACTTAACATCCA
1 GACTCTATTGGTGGTCATAGTTGAGCTATGGTCT-TACACCTTGTAACCCCATGTTTAACATTTT
*
61434924 AGTG
65 GGTG
* * ** **
61434928 AACTCTATTGGTTGTCATA-TCCAATTTATGGTCTTACACCTTGTAACCCCATGTTTAACATTTT
1 GACTCTATTGGTGGTCATAGT-TGAGCTATGGTCTTACACCTTGTAACCCCATGTTTAACATTTT
61434992 GGTG
65 GGTG
61434996 GACTCTATTGGTGGTCATAGTTGAGCTATGGTCTTACACCTTGTAACCCCATGTTTAACATTTTG
1 GACTCTATTGGTGGTCATAGTTGAGCTATGGTCTTACACCTTGTAACCCCATGTTTAACATTTTG
61435061 GTG
66 GTG
61435064 GACTCTATTGGTGGTCATAGTTGAGCTATGGTCTTACACCTT
1 GACTCTATTGGTGGTCATAGTTGAGCTATGGTCTTACACCTT
61435106 AAACCTCTTT
Statistics
Matches: 154, Mismatches: 21, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
68 152 0.99
69 2 0.01
ACGTcount: A:0.23, C:0.20, G:0.20, T:0.37
Consensus pattern (68 bp):
GACTCTATTGGTGGTCATAGTTGAGCTATGGTCTTACACCTTGTAACCCCATGTTTAACATTTTG
GTG
Found at i:61437428 original size:45 final size:46
Alignment explanation
Indices: 61437309--61437436 Score: 145
Period size: 45 Copynumber: 2.8 Consensus size: 46
61437299 ACTATCGAAA
** * *
61437309 GATGCCATAATGTCTTTTAGCTATGGTCTTAGTC--TTCTTTACCAT
1 GATGCCATAACATCTTTTAGCTATGGTCTTACTCATTTCTGTA-CAT
* * **
61437354 GACGCCATAACATCTTTTAGCCACAGTCTTACTCATTTCTGT-CAT
1 GATGCCATAACATCTTTTAGCTATGGTCTTACTCATTTCTGTACAT
*
61437399 GATGCCATAACATCTTTTAGCTATGGTCTTATTCATTT
1 GATGCCATAACATCTTTTAGCTATGGTCTTACTCATTT
61437437 TAGGCGTATA
Statistics
Matches: 68, Mismatches: 13, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
45 63 0.93
47 5 0.07
ACGTcount: A:0.23, C:0.23, G:0.13, T:0.41
Consensus pattern (46 bp):
GATGCCATAACATCTTTTAGCTATGGTCTTACTCATTTCTGTACAT
Found at i:61440569 original size:37 final size:37
Alignment explanation
Indices: 61440468--61440582 Score: 151
Period size: 37 Copynumber: 3.1 Consensus size: 37
61440458 AAACGAAATC
* * * * * *
61440468 TCCACACGAAGTTATCGGGTCTTACTCAGACAAAATC
1 TCCACACGTAGTCATCGGGTCTTACCCGGACATAATT
*
61440505 TCTACACGTAGTCATCGGGTCTTACCCGGACATAATT
1 TCCACACGTAGTCATCGGGTCTTACCCGGACATAATT
61440542 TCCACACGTAGTCATCGGGTCTTACCCGGA-ATATATT
1 TCCACACGTAGTCATCGGGTCTTACCCGGACATA-ATT
61440579 TCCA
1 TCCA
61440583 AATTTCATGT
Statistics
Matches: 69, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
36 3 0.04
37 66 0.96
ACGTcount: A:0.27, C:0.28, G:0.17, T:0.28
Consensus pattern (37 bp):
TCCACACGTAGTCATCGGGTCTTACCCGGACATAATT
Found at i:61440770 original size:48 final size:48
Alignment explanation
Indices: 61440709--61440852 Score: 252
Period size: 48 Copynumber: 3.0 Consensus size: 48
61440699 ACAATATACG
* * *
61440709 CATATCGCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATA
1 CATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATA
61440757 CATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATA
1 CATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATA
*
61440805 CATATGTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATA
1 CATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATA
61440853 TGCATGTTCA
Statistics
Matches: 92, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 92 1.00
ACGTcount: A:0.31, C:0.28, G:0.08, T:0.34
Consensus pattern (48 bp):
CATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATA
Found at i:61441005 original size:94 final size:94
Alignment explanation
Indices: 61440822--61441011 Score: 263
Period size: 94 Copynumber: 2.0 Consensus size: 94
61440812 CATACATATT
* * *
61440822 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCACATTCACCACATTGGCCATTCGGC
1 TCACATTAGCCATTCGGCCTTACCACACATATGCATGCTCACATTCACCACATTGGCCATTCGGC
* **
61440887 CTTATCACACATATGCATGCTCACATTCA
66 CTTATCACACATATACACACTCACATTCA
* * * *
61440916 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACGTTCATCACATTGGCCATTCGGC
1 TCACATTAGCCATTCGGCCTTACCACACATATGCATGCTCACATTCACCACATTGGCCATTCGGC
* * *
61440981 CTTATCTCATATATACACATTCACATTCA
66 CTTATCACACATATACACACTCACATTCA
61441010 TC
1 TC
61441012 GCATAAAATC
Statistics
Matches: 83, Mismatches: 13, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
94 83 1.00
ACGTcount: A:0.26, C:0.31, G:0.12, T:0.32
Consensus pattern (94 bp):
TCACATTAGCCATTCGGCCTTACCACACATATGCATGCTCACATTCACCACATTGGCCATTCGGC
CTTATCACACATATACACACTCACATTCA
Found at i:61441011 original size:47 final size:47
Alignment explanation
Indices: 61440822--61440986 Score: 267
Period size: 47 Copynumber: 3.5 Consensus size: 47
61440812 CATACATATT
* * * * *
61440822 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
*
61440869 CCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
*
61440916 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACGTTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
61440963 TCACATTGGCCATTCGGCCTTATC
1 TCACATTGGCCATTCGGCCTTATC
61440987 TCATATATAC
Statistics
Matches: 110, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 110 1.00
ACGTcount: A:0.24, C:0.32, G:0.13, T:0.31
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
Found at i:61446701 original size:32 final size:32
Alignment explanation
Indices: 61446664--61446725 Score: 115
Period size: 32 Copynumber: 1.9 Consensus size: 32
61446654 CTAATTTAAT
61446664 TCTTAATAGTTTGTTATATCAAAATATTTTCA
1 TCTTAATAGTTTGTTATATCAAAATATTTTCA
*
61446696 TCTTAATAGTTTGTTATGTCAAAATATTTT
1 TCTTAATAGTTTGTTATATCAAAATATTTT
61446726 GAAAATCAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.32, C:0.08, G:0.08, T:0.52
Consensus pattern (32 bp):
TCTTAATAGTTTGTTATATCAAAATATTTTCA
Found at i:61447157 original size:27 final size:27
Alignment explanation
Indices: 61447122--61447191 Score: 131
Period size: 27 Copynumber: 2.6 Consensus size: 27
61447112 GTTAAATTTT
61447122 GGATTTCAAAATACATTTTAAAGCTTG
1 GGATTTCAAAATACATTTTAAAGCTTG
61447149 GGATTTCAAAATACATTTTAAAGCTTG
1 GGATTTCAAAATACATTTTAAAGCTTG
61447176 GGATTTTCAAAATACA
1 GGA-TTTCAAAATACA
61447192 AAATTAACTA
Statistics
Matches: 42, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
27 30 0.71
28 12 0.29
ACGTcount: A:0.39, C:0.11, G:0.14, T:0.36
Consensus pattern (27 bp):
GGATTTCAAAATACATTTTAAAGCTTG
Found at i:61450397 original size:11 final size:11
Alignment explanation
Indices: 61450381--61450420 Score: 53
Period size: 11 Copynumber: 3.4 Consensus size: 11
61450371 GCAAGCTTTC
61450381 AGAGAGAAATT
1 AGAGAGAAATT
61450392 AGAGAGAAATTAAT
1 AGAGAGAAA-T--T
61450406 AGAGAGAAATT
1 AGAGAGAAATT
61450417 AGAG
1 AGAG
61450421 GTTTTTTTTA
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
11 14 0.54
12 1 0.04
13 1 0.04
14 10 0.38
ACGTcount: A:0.55, C:0.00, G:0.28, T:0.17
Consensus pattern (11 bp):
AGAGAGAAATT
Found at i:61450410 original size:14 final size:14
Alignment explanation
Indices: 61450391--61450417 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
61450381 AGAGAGAAAT
61450391 TAGAGAGAAATTAA
1 TAGAGAGAAATTAA
61450405 TAGAGAGAAATTA
1 TAGAGAGAAATTA
61450418 GAGGTTTTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.56, C:0.00, G:0.22, T:0.22
Consensus pattern (14 bp):
TAGAGAGAAATTAA
Found at i:61456788 original size:10 final size:10
Alignment explanation
Indices: 61456769--61456801 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
61456759 AGGATAATGC
61456769 AAAAAA-AAA
1 AAAAAAGAAA
61456778 AAAAAAGAAA
1 AAAAAAGAAA
*
61456788 AGAAAAGAAA
1 AAAAAAGAAA
61456798 AAAA
1 AAAA
61456802 GAATCATTCT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
9 6 0.29
10 15 0.71
ACGTcount: A:0.91, C:0.00, G:0.09, T:0.00
Consensus pattern (10 bp):
AAAAAAGAAA
Found at i:61456798 original size:18 final size:16
Alignment explanation
Indices: 61456769--61456804 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 16
61456759 AGGATAATGC
61456769 AAAAAAAAAAAAAAAG
1 AAAAAAAAAAAAAAAG
61456785 AAAAGAAAAGAAAAAAAG
1 AAAA-AAAA-AAAAAAAG
61456803 AA
1 AA
61456805 TCATTCTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 4 0.22
17 4 0.22
18 10 0.56
ACGTcount: A:0.89, C:0.00, G:0.11, T:0.00
Consensus pattern (16 bp):
AAAAAAAAAAAAAAAG
Found at i:61461610 original size:17 final size:17
Alignment explanation
Indices: 61461590--61461622 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
61461580 TAGAATTGAG
61461590 TTGAGAAGAT-AATTTAA
1 TTGAGAA-ATAAATTTAA
61461607 TTGAGAAATAAATTTA
1 TTGAGAAATAAATTTA
61461623 TTTAATTGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 2 0.13
17 13 0.87
ACGTcount: A:0.48, C:0.00, G:0.15, T:0.36
Consensus pattern (17 bp):
TTGAGAAATAAATTTAA
Found at i:61464304 original size:74 final size:73
Alignment explanation
Indices: 61464178--61464372 Score: 228
Period size: 74 Copynumber: 2.6 Consensus size: 73
61464168 GGACTCTACT
* * ** * *
61464178 AGATTATGCCATATAGGCATGTCTAGTTGACCTCATTGGATTATGCCTTAAAGGTGAATCTGGCG
1 AGATCATGCCATATAGGCA-GTCTAGCTGACCTCCCTGGATTATGCCTTAAAGATGAATCTAGCG
**
61464243 AACCTTCTT
65 AACCTTCCC
* * *
61464252 GGATCATGCCATATAAGCGAGTCTAGCTGACCTCCCTGGATTATGCCTTAAAGATGGATCTAGCG
1 AGATCATGCCATATAGGC-AGTCTAGCTGACCTCCCTGGATTATGCCTTAAAGATGAATCTAGCG
61464317 AACCTTCCC
65 AACCTTCCC
* * * *
61464326 AGATCATGCCATATAGGCAAGTTTAGCGGACCTCCCTAGATCATGCC
1 AGATCATGCCATATAGGC-AGTCTAGCTGACCTCCCTGGATTATGCC
61464373 ATATAGCTGA
Statistics
Matches: 102, Mismatches: 18, Indels: 2
0.84 0.15 0.02
Matches are distributed among these distances:
74 101 0.99
75 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.22, T:0.28
Consensus pattern (73 bp):
AGATCATGCCATATAGGCAGTCTAGCTGACCTCCCTGGATTATGCCTTAAAGATGAATCTAGCGA
ACCTTCCC
Found at i:61464395 original size:37 final size:36
Alignment explanation
Indices: 61464253--61464397 Score: 125
Period size: 37 Copynumber: 3.9 Consensus size: 36
61464243 AACCTTCTTG
*
61464253 GATCATGCCATATAAGCGAGTCTAGCTGACCTCCCTG
1 GATCATGCCATAT-AGCGAGTCTAGCTGACCTCCCTA
* * * *
61464290 GATTATGCCTTAAAGATG-GATCTAGC-GAACCTTCCC-A
1 GATCATGCCATATAG-CGAG-TCTAGCTG-ACC-TCCCTA
* * *
61464327 GATCATGCCATATAGGCAAGTTTAGCGGACCTCCCTA
1 GATCATGCCATATA-GCGAGTCTAGCTGACCTCCCTA
*
61464364 GATCATGCCATATAGCTGAGTCTTGCTGACCTCC
1 GATCATGCCATATAGC-GAGTCTAGCTGACCTCC
61464398 TTGGATTATG
Statistics
Matches: 84, Mismatches: 15, Indels: 18
0.72 0.13 0.15
Matches are distributed among these distances:
36 10 0.12
37 67 0.80
38 7 0.08
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.26
Consensus pattern (36 bp):
GATCATGCCATATAGCGAGTCTAGCTGACCTCCCTA
Found at i:61464409 original size:37 final size:36
Alignment explanation
Indices: 61464179--61464409 Score: 121
Period size: 37 Copynumber: 6.2 Consensus size: 36
61464169 GACTCTACTA
* *
61464179 GATTATGCCATATAG-GCATGTCTAGTTGACCTCATTG
1 GATTATGCCATATAGCG-A-GTCTAGCTGACCTCCTTG
* * * * * *
61464216 GATTATGCCTTAAAGGTGAATCTGGC-GAACCTTCTTG
1 GATTATGCCATATA-GCGAGTCTAGCTG-ACCTCCTTG
* *
61464253 GATCATGCCATATAAGCGAGTCTAGCTGACCTCCCTG
1 GATTATGCCATAT-AGCGAGTCTAGCTGACCTCCTTG
* * * **
61464290 GATTATGCCTTAAAGATG-GATCTAGC-GAACCTTCC-CA
1 GATTATGCCATATAG-CGAG-TCTAGCTG-ACC-TCCTTG
* * * * * *
61464327 GATCATGCCATATAGGCAAGTTTAGCGGACCTCCCTA
1 GATTATGCCATATA-GCGAGTCTAGCTGACCTCCTTG
* *
61464364 GATCATGCCATATAGCTGAGTCTTGCTGACCTCCTTG
1 GATTATGCCATATAGC-GAGTCTAGCTGACCTCCTTG
61464401 GATTATGCC
1 GATTATGCC
61464410 TTAAAGGTGG
Statistics
Matches: 145, Mismatches: 35, Indels: 28
0.70 0.17 0.13
Matches are distributed among these distances:
36 10 0.07
37 124 0.86
38 10 0.07
39 1 0.01
ACGTcount: A:0.25, C:0.24, G:0.22, T:0.29
Consensus pattern (36 bp):
GATTATGCCATATAGCGAGTCTAGCTGACCTCCTTG
Found at i:61464482 original size:111 final size:111
Alignment explanation
Indices: 61464251--61464485 Score: 276
Period size: 111 Copynumber: 2.1 Consensus size: 111
61464241 CGAACCTTCT
61464251 TGGATCATGCCATATAAGCGAGTCTAGCTGACCTCCCTGGATTATGCCTTAAAGATGGATCTAGC
1 TGGATCATGCCATATAAGCGAGTCTAGCTGACCTCCCTGGATTATGCCTTAAAGATGGATCTAGC
* *
61464316 GAACCTTCCCAGATCATGCCATATAGGCAAGTTTAGCGGACCTCCC
66 GAACCTTCCCAGATCATGCCATATAGACAAGTCTAGCGGACCTCCC
* * * * * *
61464362 TAGATCATGCCATAT-AGCTGAGTCTTGCTGACCTCCTTGGATTATGCCTTAAAGGTGGATTTGG
1 TGGATCATGCCATATAAGC-GAGTCTAGCTGACCTCCCTGGATTATGCCTTAAAGATGGATCTAG
** * ** * * * *
61464426 CGAA-CTTACCTGGATCATGCCATGTAGATGAGTCTGGCTGACTTTCC
65 CGAACCTT-CCCAGATCATGCCATATAGACAAGTCTAGCGGACCTCCC
*
61464473 TGGACCATGCCAT
1 TGGATCATGCCAT
61464486 GGCCATGGCC
Statistics
Matches: 103, Mismatches: 19, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
110 6 0.06
111 97 0.94
ACGTcount: A:0.24, C:0.25, G:0.23, T:0.29
Consensus pattern (111 bp):
TGGATCATGCCATATAAGCGAGTCTAGCTGACCTCCCTGGATTATGCCTTAAAGATGGATCTAGC
GAACCTTCCCAGATCATGCCATATAGACAAGTCTAGCGGACCTCCC
Found at i:61467221 original size:235 final size:237
Alignment explanation
Indices: 61466800--61467265 Score: 810
Period size: 235 Copynumber: 2.0 Consensus size: 237
61466790 AAACTCCATT
* *
61466800 TACCTATCTTAGTACAATGCATCTGGTGATTTCATTATCATCTCATTATTCTTCGTTCTTCAGCT
1 TACCTATCTTAGTACAATGCATCTGGTGATTTCATTATCATCTCATTATTCTTCATTCTTCAACT
* * *
61466865 TGACTTTGGCGAGTACCTTTTTTCATCCTAACATAGACGCCATACATTGCTTTGTGGCCATTCCT
66 TGACTTTGGCGAGTACCTTTCTTCATCCTAACATAGACACCATACATTGCTTTGTGACCATTCCT
*
61466930 AACCCTTAGCATATTTAGTACATTACTTACATTCTTCACCTAGCCTTTTCGTGATTCCTTAACTG
131 AACCCTTAGCATATTTAGGACATTACTTACATTCTTCACCTAGCCTTTTCGTGATTCCTTAACTG
61466995 TTTCCATTTTGGAA-CCATACTTACAAAACACTATTTACCTA
196 TTTCCATTTTGGAACCCATACTTACAAAACACTATTTACCTA
*
61467036 TACC-ATCTTAGTACAATGCATCTGGTGATTTCATTATCATCTCATTATTCTTCATTTTTCAACT
1 TACCTATCTTAGTACAATGCATCTGGTGATTTCATTATCATCTCATTATTCTTCATTCTTCAACT
* * *
61467100 TGACTTTGGCGAGTACCTTTCTTCATCCTAACATAGACACTATACATTGCTTTGTGACTATTTCT
66 TGACTTTGGCGAGTACCTTTCTTCATCCTAACATAGACACCATACATTGCTTTGTGACCATTCCT
*
61467165 AACCCTTAGCATATTTAGGACATTACTTACATTCTTCACCTAGCCTTTTTGTGATTCCTTAACTG
131 AACCCTTAGCATATTTAGGACATTACTTACATTCTTCACCTAGCCTTTTCGTGATTCCTTAACTG
*
61467230 TTTCCGTTTTGGAACCCATACTTACAAAACACTATT
196 TTTCCATTTTGGAACCCATACTTACAAAACACTATT
61467266 GACCAAGTTG
Statistics
Matches: 217, Mismatches: 12, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
235 192 0.88
236 25 0.12
ACGTcount: A:0.25, C:0.24, G:0.11, T:0.40
Consensus pattern (237 bp):
TACCTATCTTAGTACAATGCATCTGGTGATTTCATTATCATCTCATTATTCTTCATTCTTCAACT
TGACTTTGGCGAGTACCTTTCTTCATCCTAACATAGACACCATACATTGCTTTGTGACCATTCCT
AACCCTTAGCATATTTAGGACATTACTTACATTCTTCACCTAGCCTTTTCGTGATTCCTTAACTG
TTTCCATTTTGGAACCCATACTTACAAAACACTATTTACCTA
Found at i:61467816 original size:35 final size:35
Alignment explanation
Indices: 61467769--61467838 Score: 131
Period size: 35 Copynumber: 2.0 Consensus size: 35
61467759 CATTGCTTGT
*
61467769 CCTCAAGTAAAGAAACATAAAAATAAAATATGAAA
1 CCTCAAGCAAAGAAACATAAAAATAAAATATGAAA
61467804 CCTCAAGCAAAGAAACATAAAAATAAAATATGAAA
1 CCTCAAGCAAAGAAACATAAAAATAAAATATGAAA
61467839 GATGATTCTT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.63, C:0.13, G:0.09, T:0.16
Consensus pattern (35 bp):
CCTCAAGCAAAGAAACATAAAAATAAAATATGAAA
Found at i:61473191 original size:48 final size:48
Alignment explanation
Indices: 61473019--61473197 Score: 198
Period size: 48 Copynumber: 3.7 Consensus size: 48
61473009 TAAAGTACCA
* * * ** *
61473019 ATGCCATGTCCCCGACATGGTCTTAGATGAATC-CACATATCATCACCA
1 ATGCCATGTCCCAGACATGGTCTTACA-CAGGCACACATATCATCACCG
* ** *
61473067 ATACCATGTCCCAGACATTATCTTACACTGGCACACATATCATCACCG
1 ATGCCATGTCCCAGACATGGTCTTACACAGGCACACATATCATCACCG
* * * *
61473115 ATGCCATGTCCTAGACATGGTCTTACACAGGCATATATATCATCATCG
1 ATGCCATGTCCCAGACATGGTCTTACACAGGCACACATATCATCACCG
* *
61473163 ATGCCATGTCCCAAACATGGTCTTACACAGACACA
1 ATGCCATGTCCCAGACATGGTCTTACACAGGCACA
61473198 TTTAGCACGG
Statistics
Matches: 108, Mismatches: 22, Indels: 2
0.82 0.17 0.02
Matches are distributed among these distances:
47 1 0.01
48 107 0.99
ACGTcount: A:0.31, C:0.30, G:0.14, T:0.25
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACACAGGCACACATATCATCACCG
Found at i:61481237 original size:42 final size:41
Alignment explanation
Indices: 61481186--61481299 Score: 124
Period size: 43 Copynumber: 2.7 Consensus size: 41
61481176 TCTGTTTTAT
*
61481186 GTGTAAGACCATGTCTGGGACATCGAG-ATCGTA-TCTGATTTC
1 GTGTAAGACCATGTCTGGGACAT-G-GCATCG-ACTCTGATTGC
* *
61481228 GTGTAAGACCTTGTCTGGGACAGTGGCATCGACGTTTGATTGC
1 GTGTAAGACCATGTCTGGGACA-TGGCATCGAC-TCTGATTGC
*
61481271 ATGTAAGACCATGTCTGGGACATTGGCAT
1 GTGTAAGACCATGTCTGGGACA-TGGCAT
61481300 TGTATATACT
Statistics
Matches: 62, Mismatches: 6, Indels: 7
0.83 0.08 0.09
Matches are distributed among these distances:
41 2 0.03
42 26 0.42
43 34 0.55
ACGTcount: A:0.23, C:0.18, G:0.29, T:0.30
Consensus pattern (41 bp):
GTGTAAGACCATGTCTGGGACATGGCATCGACTCTGATTGC
Found at i:61483573 original size:10 final size:12
Alignment explanation
Indices: 61483549--61483582 Score: 54
Period size: 10 Copynumber: 3.0 Consensus size: 12
61483539 TCTCACTCCC
61483549 AATCTCTCTACA
1 AATCTCTCTACA
61483561 AATCTC-CTA-A
1 AATCTCTCTACA
61483571 AATCTCTCTACA
1 AATCTCTCTACA
61483583 CATCACTCAA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
10 7 0.35
11 6 0.30
12 7 0.35
ACGTcount: A:0.35, C:0.32, G:0.00, T:0.32
Consensus pattern (12 bp):
AATCTCTCTACA
Found at i:61488493 original size:45 final size:45
Alignment explanation
Indices: 61488435--61488524 Score: 162
Period size: 45 Copynumber: 2.0 Consensus size: 45
61488425 TGAGAATAAG
*
61488435 TTAAGTTGATGATATGATGAGATTTAGAATATAAGTATGTAAGTT
1 TTAAGTTGATGATATGATGAGATTGAGAATATAAGTATGTAAGTT
*
61488480 TTAAGTTGATGATATGATGAGATTGAGAATGTAAGTATGTAAGTT
1 TTAAGTTGATGATATGATGAGATTGAGAATATAAGTATGTAAGTT
61488525 GAGTAGCATT
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
45 43 1.00
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (45 bp):
TTAAGTTGATGATATGATGAGATTGAGAATATAAGTATGTAAGTT
Found at i:61488931 original size:47 final size:47
Alignment explanation
Indices: 61488870--61488991 Score: 208
Period size: 47 Copynumber: 2.6 Consensus size: 47
61488860 GTATTGGCAC
**
61488870 TAAGACAATTATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
61488917 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
* *
61488964 TAAGATAAGGATATCATGTAAGACCATG
1 TAAGACAAGGATACCATGTAAGACCATG
61488992 CCAAGGCATG
Statistics
Matches: 71, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 71 1.00
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.27
Consensus pattern (47 bp):
TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
Found at i:61489099 original size:55 final size:54
Alignment explanation
Indices: 61488970--61489163 Score: 257
Period size: 55 Copynumber: 3.6 Consensus size: 54
61488960 TTGGTAAGAT
* * *
61488970 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
* * *
61489024 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTT-CTATAAGGC
* * *
61489079 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
* *
61489132 AAGGATACCACGTAAGACCATGTCAAGACATG
1 AAGGATACCATGTAAGACCATGCCAAGACATG
61489164 AAAATGGTAA
Statistics
Matches: 123, Mismatches: 14, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
52 4 0.03
53 30 0.24
54 42 0.34
55 43 0.35
56 4 0.03
ACGTcount: A:0.36, C:0.18, G:0.25, T:0.22
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
Found at i:61491731 original size:13 final size:13
Alignment explanation
Indices: 61491713--61491737 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
61491703 ACAAACGATA
61491713 AAATTTTCACACG
1 AAATTTTCACACG
61491726 AAATTTTCACAC
1 AAATTTTCACAC
61491738 ATATAAATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.24, G:0.04, T:0.32
Consensus pattern (13 bp):
AAATTTTCACACG
Found at i:61499816 original size:13 final size:13
Alignment explanation
Indices: 61499798--61499822 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
61499788 ACAAACAATA
61499798 AAATTTTCACACG
1 AAATTTTCACACG
61499811 AAATTTTCACAC
1 AAATTTTCACAC
61499823 ATATAAATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.24, G:0.04, T:0.32
Consensus pattern (13 bp):
AAATTTTCACACG
Found at i:61506168 original size:24 final size:24
Alignment explanation
Indices: 61506132--61506243 Score: 89
Period size: 24 Copynumber: 4.6 Consensus size: 24
61506122 TCTTACTTAT
**
61506132 TCGCACACATAGTGCCACGTTTTC
1 TCGCACACATAGTGCCACGTAATC
* * *
61506156 TCGTACACATAGTGTCATGTAATC
1 TCGCACACATAGTGCCACGTAATC
* * *
61506180 TCGCACACATAGTGCCACTTAGTTT
1 TCGCACACATAGTGCCACGTA-ATC
* * * * *
61506205 TTGCACACATAGTGTCGCATAACC
1 TCGCACACATAGTGCCACGTAATC
*
61506229 TTGCACACATAGTGC
1 TCGCACACATAGTGC
61506244 TGAAATTTCT
Statistics
Matches: 68, Mismatches: 19, Indels: 2
0.76 0.21 0.02
Matches are distributed among these distances:
24 50 0.74
25 18 0.26
ACGTcount: A:0.26, C:0.28, G:0.17, T:0.29
Consensus pattern (24 bp):
TCGCACACATAGTGCCACGTAATC
Found at i:61506213 original size:49 final size:48
Alignment explanation
Indices: 61506132--61506243 Score: 129
Period size: 49 Copynumber: 2.3 Consensus size: 48
61506122 TCTTACTTAT
* ** *
61506132 TCGCACACATAGTGCCACGTTTTCTCGTACACATAGTGTCATGTAATC
1 TCGCACACATAGTGCCACGTTTTCTCGCACACATAGTGTCACATAACC
*
61506180 TCGCACACATAGTGCCACTTAGTTTT-T-GCACACATAGTGTCGCATAACC
1 TCGCACACATAGTGCCAC---GTTTTCTCGCACACATAGTGTCACATAACC
*
61506229 TTGCACACATAGTGC
1 TCGCACACATAGTGC
61506244 TGAAATTTCT
Statistics
Matches: 55, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
48 18 0.33
49 31 0.56
50 1 0.02
51 5 0.09
ACGTcount: A:0.26, C:0.28, G:0.17, T:0.29
Consensus pattern (48 bp):
TCGCACACATAGTGCCACGTTTTCTCGCACACATAGTGTCACATAACC
Found at i:61506635 original size:19 final size:20
Alignment explanation
Indices: 61506613--61506650 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
61506603 TAATTTCTTC
*
61506613 TTTTATTCCTATT-TTTATT
1 TTTTATTCATATTATTTATT
61506632 TTTTATTCATATTATTTAT
1 TTTTATTCATATTATTTAT
61506651 GATATTATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 12 0.71
20 5 0.29
ACGTcount: A:0.21, C:0.08, G:0.00, T:0.71
Consensus pattern (20 bp):
TTTTATTCATATTATTTATT
Found at i:61509492 original size:31 final size:31
Alignment explanation
Indices: 61509457--61509519 Score: 90
Period size: 31 Copynumber: 2.0 Consensus size: 31
61509447 ATATCTCGTT
*
61509457 TTGAAAGTAGTCTTAGGAACATCAAAATCTC
1 TTGAAAGCAGTCTTAGGAACATCAAAATCTC
* * *
61509488 TTGAAAGCAGTTTTAGGAACGTCAGAATCTC
1 TTGAAAGCAGTCTTAGGAACATCAAAATCTC
61509519 T
1 T
61509520 AACTCGCAAC
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.35, C:0.16, G:0.19, T:0.30
Consensus pattern (31 bp):
TTGAAAGCAGTCTTAGGAACATCAAAATCTC
Found at i:61513129 original size:24 final size:24
Alignment explanation
Indices: 61513083--61513141 Score: 73
Period size: 24 Copynumber: 2.5 Consensus size: 24
61513073 TACTTATTCG
***
61513083 CACACATAGTGCCACGTTTTCTCC
1 CACACATAGTGCCACGGAATCTCC
* *
61513107 CACACATAGTGCCAGGGAATCTCG
1 CACACATAGTGCCACGGAATCTCC
61513131 CACACATAGTG
1 CACACATAGTG
61513142 TCACTTAGTT
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.27, C:0.32, G:0.19, T:0.22
Consensus pattern (24 bp):
CACACATAGTGCCACGGAATCTCC
Found at i:61513584 original size:20 final size:21
Alignment explanation
Indices: 61513559--61513597 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
61513549 TAATTTCTTC
*
61513559 TTTTATTCCTATT-TTTATTT
1 TTTTATTCATATTATTTATTT
61513579 TTTTATTCATATTATTTAT
1 TTTTATTCATATTATTTAT
61513598 GATATTATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.21, C:0.08, G:0.00, T:0.72
Consensus pattern (21 bp):
TTTTATTCATATTATTTATTT
Found at i:61515821 original size:43 final size:44
Alignment explanation
Indices: 61515774--61515913 Score: 141
Period size: 43 Copynumber: 3.2 Consensus size: 44
61515764 TCCTATATGT
61515774 GGTCTTACATGTAATCAAATATCGATGCC-ACTGTCCCAGACAG
1 GGTCTTACATGTAATCAAATATCGATGCCAACTGTCCCAGACAG
* * * * *
61515817 GGTCTTACACGAAATCAAATAT-GATGCCGA-TGTCCCAAACAT
1 GGTCTTACATGTAATCAAATATCGATGCCAACTGTCCCAGACAG
*
61515859 GGTCTTACATGTAAATCTCAA-ATCGATGCCAACAT-T-CCAGAC-G
1 GGTCTTACATGT-AATC-AAATATCGATGCCAAC-TGTCCCAGACAG
61515902 TGGTCTTACATG
1 -GGTCTTACATG
61515914 AAAACACATA
Statistics
Matches: 80, Mismatches: 10, Indels: 13
0.78 0.10 0.13
Matches are distributed among these distances:
42 26 0.32
43 27 0.34
44 25 0.31
45 1 0.01
46 1 0.01
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.26
Consensus pattern (44 bp):
GGTCTTACATGTAATCAAATATCGATGCCAACTGTCCCAGACAG
Found at i:61517916 original size:17 final size:17
Alignment explanation
Indices: 61517857--61517922 Score: 66
Period size: 17 Copynumber: 3.9 Consensus size: 17
61517847 TAATAAATTT
61517857 AAAATATAATATATAATAA
1 AAAATATAAT-TAT-ATAA
61517876 AAAATAT-ATT-TAT-A
1 AAAATATAATTATATAA
*
61517890 AGAATAATAATTATATAA
1 AAAAT-ATAATTATATAA
*
61517908 AAAATATAAATATAT
1 AAAATATAATTATAT
61517923 TGGTTTAGAA
Statistics
Matches: 40, Mismatches: 3, Indels: 10
0.75 0.06 0.19
Matches are distributed among these distances:
14 5 0.12
15 4 0.10
16 4 0.10
17 13 0.32
18 7 0.17
19 7 0.17
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.35
Consensus pattern (17 bp):
AAAATATAATTATATAA
Found at i:61518203 original size:20 final size:19
Alignment explanation
Indices: 61518178--61518254 Score: 59
Period size: 19 Copynumber: 3.7 Consensus size: 19
61518168 TTTAATGATA
61518178 ATAATATATAGATAAAATGT
1 ATAATATATA-ATAAAATGT
61518198 ATAATAATATAA-AAAATGACAT
1 ATAAT-ATATAATAAAATG---T
61518220 AATAATATATAAATAATAATGT
1 -ATAATATAT-AATAA-AATGT
*
61518242 AAAATA-ATAATAA
1 ATAATATATAATAA
61518255 TTTGTGAAAA
Statistics
Matches: 48, Mismatches: 1, Indels: 17
0.73 0.02 0.26
Matches are distributed among these distances:
19 11 0.23
20 8 0.17
21 10 0.21
22 6 0.12
23 7 0.15
24 2 0.04
25 4 0.08
ACGTcount: A:0.62, C:0.01, G:0.05, T:0.31
Consensus pattern (19 bp):
ATAATATATAATAAAATGT
Found at i:61518252 original size:30 final size:30
Alignment explanation
Indices: 61518198--61518331 Score: 98
Period size: 30 Copynumber: 4.3 Consensus size: 30
61518188 GATAAAATGT
61518198 ATAATAATATAAAAAATGACATAATAATATATAA
1 ATAATAATAT--AAAAT-A-ATAATAATATATAA
* * *
61518232 ATAATAATGTAAAATAATAATAATTTGTGAA
1 ATAATAATATAAAATAATAATAATATAT-AA
*
61518263 A-AATAATATATAAT-A-AAT-A-ATATAA
1 ATAATAATATAAAATAATAATAATATATAA
61518288 ATAATATATAATAAAATAATTATATAATATATAA
1 ATAATA-AT-ATAAAATAA-TA-ATAATATATAA
*
61518322 TATAAAAATA
1 -ATAATAATA
61518332 AGGTTAAAAA
Statistics
Matches: 80, Mismatches: 9, Indels: 23
0.71 0.08 0.21
Matches are distributed among these distances:
25 3 0.04
26 6 0.08
27 3 0.04
28 9 0.11
29 2 0.03
30 21 0.26
31 5 0.06
32 7 0.09
33 2 0.03
34 17 0.21
35 5 0.06
ACGTcount: A:0.63, C:0.01, G:0.03, T:0.34
Consensus pattern (30 bp):
ATAATAATATAAAATAATAATAATATATAA
Found at i:61518268 original size:44 final size:45
Alignment explanation
Indices: 61518177--61518302 Score: 127
Period size: 44 Copynumber: 2.9 Consensus size: 45
61518167 CTTTAATGAT
* * * *
61518177 AATAATATATAGATAA-AATGTATAATAAT-ATAAAAAATGACAT
1 AATAATATATAAATAATAATGTAAAATAATAATAATAAATGACAA
***
61518220 AATAATATATAAATAATAATGTAAAATAATAATAATTTGTGA-AA
1 AATAATATATAAATAATAATGTAAAATAATAATAATAAATGACAA
*
61518264 AATAATATAT-AATAAATAATAT-AAATAATATATAATAAA
1 AATAATATATAAAT-AATAATGTAAAATAATA-ATAATAAA
61518303 ATAATTATAT
Statistics
Matches: 68, Mismatches: 11, Indels: 7
0.79 0.13 0.08
Matches are distributed among these distances:
43 26 0.38
44 35 0.51
45 7 0.10
ACGTcount: A:0.62, C:0.01, G:0.05, T:0.33
Consensus pattern (45 bp):
AATAATATATAAATAATAATGTAAAATAATAATAATAAATGACAA
Found at i:61518277 original size:7 final size:7
Alignment explanation
Indices: 61518265--61518325 Score: 68
Period size: 7 Copynumber: 8.1 Consensus size: 7
61518255 TTTGTGAAAA
61518265 ATAATAT
1 ATAATAT
*
61518272 ATAATAA
1 ATAATAT
61518279 ATAATAT
1 ATAATAT
61518286 AAATAATAT
1 --ATAATAT
*
61518295 ATAATAAA
1 ATAAT-AT
61518303 ATAATTAT
1 ATAA-TAT
61518311 ATAATAT
1 ATAATAT
61518318 ATAATAT
1 ATAATAT
61518325 A
1 A
61518326 AAAATAAGGT
Statistics
Matches: 46, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
7 28 0.61
8 10 0.22
9 8 0.17
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (7 bp):
ATAATAT
Found at i:61518289 original size:23 final size:23
Alignment explanation
Indices: 61518177--61518323 Score: 98
Period size: 23 Copynumber: 6.6 Consensus size: 23
61518167 CTTTAATGAT
*
61518177 AATAATATATAGAT-AA-AATGTA
1 AATAATATATA-ATAAATAATATA
* *
61518199 TAATAATATA-AA-AAATGACAT-
1 -AATAATATATAATAAATAATATA
*
61518220 AATAATATATAA-ATAATAATGT-
1 AATAATATATAATA-AATAATATA
* ** *
61518242 AA-AATA-ATAATAATTTGTGAAA
1 AATAATATATAATAAATAAT-ATA
61518264 AATAATATATAATAAATAATATA
1 AATAATATATAATAAATAATATA
61518287 AATAATATATAATAAAATAAT-TA
1 AATAATATATAAT-AAATAATATA
*
61518310 TATAATATATAATA
1 AATAATATATAATA
61518324 TAAAAATAAG
Statistics
Matches: 98, Mismatches: 16, Indels: 21
0.73 0.12 0.16
Matches are distributed among these distances:
20 16 0.16
21 11 0.11
22 13 0.13
23 42 0.43
24 16 0.16
ACGTcount: A:0.61, C:0.01, G:0.04, T:0.34
Consensus pattern (23 bp):
AATAATATATAATAAATAATATA
Found at i:61522082 original size:55 final size:56
Alignment explanation
Indices: 61522017--61522131 Score: 146
Period size: 55 Copynumber: 2.1 Consensus size: 56
61522007 AGCATGGCTG
* *
61522017 CCAGATACAGA-AAATGTGACAGAGTCACCAGATACAGATATTTTGTGGCAGT-GCCA
1 CCAGATACAGATAAATGTGACAGAGCCACCAGA-ACAGATAATTTGTGGCA-TAGCCA
* * *
61522073 CCAGA-ACAGATATATGTGGCAGGGCCACCAGAACAGATAATTTGTGGCATAGCCA
1 CCAGATACAGATAAATGTGACAGAGCCACCAGAACAGATAATTTGTGGCATAGCCA
61522128 CCAG
1 CCAG
61522132 GACGCTTCCT
Statistics
Matches: 52, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
54 1 0.02
55 29 0.56
56 22 0.42
ACGTcount: A:0.35, C:0.22, G:0.24, T:0.19
Consensus pattern (56 bp):
CCAGATACAGATAAATGTGACAGAGCCACCAGAACAGATAATTTGTGGCATAGCCA
Found at i:61522094 original size:27 final size:27
Alignment explanation
Indices: 61522042--61522131 Score: 119
Period size: 27 Copynumber: 3.2 Consensus size: 27
61522032 GTGACAGAGT
61522042 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATA-TTTGTGGCAGTGC
* *
61522071 CACCAGAACAGATATATGTGGCAGGGC
1 CACCAGAACAGATATTTGTGGCAGTGC
61522098 CACCAGAACAGATAATTTGTGGCA-TAGC
1 CACCAGAACAGAT-ATTTGTGGCAGT-GC
61522126 CACCAG
1 CACCAG
61522132 GACGCTTCCT
Statistics
Matches: 55, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
27 24 0.44
28 24 0.44
29 7 0.13
ACGTcount: A:0.32, C:0.23, G:0.24, T:0.20
Consensus pattern (27 bp):
CACCAGAACAGATATTTGTGGCAGTGC
Found at i:61528855 original size:15 final size:15
Alignment explanation
Indices: 61528836--61528874 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 15
61528826 TGAAAACAGA
61528836 GTTTTTTAAAAACTT
1 GTTTTTTAAAAACTT
*
61528851 -TTTTTTTAAAACTT
1 GTTTTTTAAAAACTT
*
61528865 GTTTTGTAAA
1 GTTTTTTAAA
61528875 CCCATTCCAC
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
14 13 0.65
15 7 0.35
ACGTcount: A:0.31, C:0.05, G:0.08, T:0.56
Consensus pattern (15 bp):
GTTTTTTAAAAACTT
Found at i:61529910 original size:27 final size:27
Alignment explanation
Indices: 61529859--61529948 Score: 101
Period size: 28 Copynumber: 3.2 Consensus size: 27
61529849 GTGACAGAGT
61529859 CACCAGATATAGATATTTTGTGGCAGTGC
1 CACCAGA-ATAGATA-TTTGTGGCAGTGC
* * *
61529888 CACCAGAACAGATATATGTGGCAGGGC
1 CACCAGAATAGATATTTGTGGCAGTGC
*
61529915 CACCAGAGTAGATAATTTGTGGCA-TAGC
1 CACCAGAATAGAT-ATTTGTGGCAGT-GC
61529943 CACCAG
1 CACCAG
61529949 GAAGCTTCCT
Statistics
Matches: 52, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
27 22 0.42
28 23 0.44
29 7 0.13
ACGTcount: A:0.31, C:0.21, G:0.26, T:0.22
Consensus pattern (27 bp):
CACCAGAATAGATATTTGTGGCAGTGC
Done.