Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 191 of 349
Found at i:62004605 original size:10 final size:10
Alignment explanation
Indices: 62004584--62004643 Score: 77
Period size: 10 Copynumber: 5.8 Consensus size: 10
62004574 ATTTATTTAA
62004584 GTGTTT-AAT
1 GTGTTTAAAT
62004593 GTGTTTAAAT
1 GTGTTTAAAT
62004603 GTGTTTAAAT
1 GTGTTTAAAT
62004613 GTGTTTAATAT
1 GTGTTTAA-AT
*
62004624 GTCTGTTTTAAT
1 G--TGTTTAAAT
62004636 GTGTTTAA
1 GTGTTTAA
62004644 TTTCAGGTGT
Statistics
Matches: 45, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
9 6 0.13
10 27 0.60
11 3 0.07
12 3 0.07
13 6 0.13
ACGTcount: A:0.25, C:0.02, G:0.20, T:0.53
Consensus pattern (10 bp):
GTGTTTAAAT
Found at i:62004636 original size:23 final size:21
Alignment explanation
Indices: 62004587--62004644 Score: 82
Period size: 23 Copynumber: 2.7 Consensus size: 21
62004577 TATTTAAGTG
62004587 TTTAATGTGTTTAA-ATGTGT
1 TTTAATGTGTTTAATATGTGT
*
62004607 TTAAATGTGTTTAATATGTCTGT
1 TTTAATGTGTTTAATATG--TGT
62004630 TTTAATGTGTTTAAT
1 TTTAATGTGTTTAAT
62004645 TTCAGGTGTC
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
20 13 0.39
21 3 0.09
23 17 0.52
ACGTcount: A:0.26, C:0.02, G:0.17, T:0.55
Consensus pattern (21 bp):
TTTAATGTGTTTAATATGTGT
Found at i:62005426 original size:234 final size:233
Alignment explanation
Indices: 62005018--62005487 Score: 886
Period size: 234 Copynumber: 2.0 Consensus size: 233
62005008 GTTTTTTAGC
62005018 TTTATTTCAGCTCATTATTAGCTCATTAAGATGATCATTGTGACTATTCGGCTAGACCTCTTTGG
1 TTTATTTCAGCTCATTATTAGCTCATTAAGATGATCATTGTGACTATTCGGCTAGACCTCTTTGG
62005083 TACTATAAATATGTGTAATCAACCTTTTGTAGAGAACCTTTTTGCTGAATTTATGCTATATTTGA
66 TACTATAAATATGTGTAATCAACCTTTTGTAGAGAACCTTTTTGCTGAATTTATGCTATATTTGA
* *
62005148 GTTTCGTGAGTTATCCAATTCTCTTTGTTCTTTCGGAACTGATCTGACTTATCAAGCTTTGCTTG
131 GTTTCATGAGTTATCCAATTCTCTTTGTTCTTTCGAAACTGATCTGACTTATCAAGCTTTGCTTG
*
62005213 TGGCGTCTATCCTTTCCTTGTTAACCGAACTTATCACT
196 TGGCGTCTATCCTTTCCTTGTTAACCGAACATATCACT
*
62005251 TTTATTTGAGCTCATTATTAGCTCATTAAGATGATCATATGTGACTATTCGGCTAGACCTCTTTG
1 TTTATTTCAGCTCATTATTAGCTCATTAAGATGATCAT-TGTGACTATTCGGCTAGACCTCTTTG
*
62005316 GTACTATAAATATGTGTAATCAGCCTTTTGTAGAGAACCTTTTTGCTGAATTTATGCTATATTTG
65 GTACTATAAATATGTGTAATCAACCTTTTGTAGAGAACCTTTTTGCTGAATTTATGCTATATTTG
62005381 AGTTTCATGAGTTATCCAATTCTCTTTGTTCTTTCGAAACTGATCTGACTTATCAAGCTTTGCTT
130 AGTTTCATGAGTTATCCAATTCTCTTTGTTCTTTCGAAACTGATCTGACTTATCAAGCTTTGCTT
62005446 GTGGCGTCTATCCTTTCCTTGTTAACCGAACATATCACT
195 GTGGCGTCTATCCTTTCCTTGTTAACCGAACATATCACT
62005485 TTT
1 TTT
62005488 CTAAGTGCGG
Statistics
Matches: 231, Mismatches: 5, Indels: 1
0.97 0.02 0.00
Matches are distributed among these distances:
233 37 0.16
234 194 0.84
ACGTcount: A:0.23, C:0.19, G:0.16, T:0.43
Consensus pattern (233 bp):
TTTATTTCAGCTCATTATTAGCTCATTAAGATGATCATTGTGACTATTCGGCTAGACCTCTTTGG
TACTATAAATATGTGTAATCAACCTTTTGTAGAGAACCTTTTTGCTGAATTTATGCTATATTTGA
GTTTCATGAGTTATCCAATTCTCTTTGTTCTTTCGAAACTGATCTGACTTATCAAGCTTTGCTTG
TGGCGTCTATCCTTTCCTTGTTAACCGAACATATCACT
Found at i:62006855 original size:13 final size:13
Alignment explanation
Indices: 62006818--62006863 Score: 65
Period size: 13 Copynumber: 3.5 Consensus size: 13
62006808 TTTGGCAATA
62006818 CTTTTGAGAAGTG
1 CTTTTGAGAAGTG
* * *
62006831 CTGTGGAAAAGTG
1 CTTTTGAGAAGTG
62006844 CTTTTGAGAAGTG
1 CTTTTGAGAAGTG
62006857 CTTTTGA
1 CTTTTGA
62006864 AAAATTTAAG
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
13 27 1.00
ACGTcount: A:0.24, C:0.09, G:0.30, T:0.37
Consensus pattern (13 bp):
CTTTTGAGAAGTG
Found at i:62008578 original size:3 final size:3
Alignment explanation
Indices: 62008570--62008596 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
62008560 ATTTTGTGAG
62008570 TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT
62008597 GTGAGGATAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:62009940 original size:18 final size:18
Alignment explanation
Indices: 62009891--62009940 Score: 55
Period size: 18 Copynumber: 2.8 Consensus size: 18
62009881 AATATTAAAT
* **
62009891 AATTATTTTTATAAACTA
1 AATTATTTTTTTAAAAAA
* *
62009909 AATTATATTATTAAAAAA
1 AATTATTTTTTTAAAAAA
62009927 AATTATTTTTTTAA
1 AATTATTTTTTTAA
62009941 TCAATAAAAA
Statistics
Matches: 25, Mismatches: 7, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (18 bp):
AATTATTTTTTTAAAAAA
Found at i:62011845 original size:17 final size:17
Alignment explanation
Indices: 62011825--62011858 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
62011815 ATTAAATTTT
62011825 GTCATTAATTTTTTAAA
1 GTCATTAATTTTTTAAA
*
62011842 GTCATTATTTTTTTAAA
1 GTCATTAATTTTTTAAA
62011859 CGAATATATT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.32, C:0.06, G:0.06, T:0.56
Consensus pattern (17 bp):
GTCATTAATTTTTTAAA
Found at i:62012913 original size:18 final size:20
Alignment explanation
Indices: 62012872--62012913 Score: 61
Period size: 18 Copynumber: 2.2 Consensus size: 20
62012862 TGATTATAAA
*
62012872 AAAAATCATAAAATATTTAT
1 AAAAATCATAAAATATTAAT
62012892 AAAAA-CATAAAA-ATTAAT
1 AAAAATCATAAAATATTAAT
62012910 AAAA
1 AAAA
62012914 TTGTAATAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 9 0.43
19 7 0.33
20 5 0.24
ACGTcount: A:0.69, C:0.05, G:0.00, T:0.26
Consensus pattern (20 bp):
AAAAATCATAAAATATTAAT
Found at i:62016024 original size:30 final size:30
Alignment explanation
Indices: 62015966--62016024 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
62015956 ATTTTCAAGC
**
62015966 CTAGGGGCAAAACGGTCATTTTGTCAAAGT
1 CTAGGGGCAAAACGGTCATTTTACCAAAGT
* *
62015996 CTAGGGGCAAAATGGTCGTTTTACCAAAG
1 CTAGGGGCAAAACGGTCATTTTACCAAAG
62016025 ATATGAATTT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.31, C:0.17, G:0.27, T:0.25
Consensus pattern (30 bp):
CTAGGGGCAAAACGGTCATTTTACCAAAGT
Found at i:62016512 original size:46 final size:46
Alignment explanation
Indices: 62016363--62016567 Score: 254
Period size: 46 Copynumber: 4.4 Consensus size: 46
62016353 TCACTTCTGT
* * *
62016363 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATTATGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-GATGA
* * *
62016409 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACGA
1 GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGATGA
* *
62016457 GTGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATG-A
*
62016504 -AGCCAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATGTA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATG-A
*
62016550 -AGCCAGTGTAAAACATGT
1 GAGCCAGTGTAAGACATGT
62016568 AAGACCATAT
Statistics
Matches: 140, Mismatches: 15, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
46 87 0.62
47 29 0.21
48 23 0.16
49 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.30, T:0.22
Consensus pattern (46 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGA
Found at i:62017562 original size:18 final size:18
Alignment explanation
Indices: 62017539--62017574 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
62017529 GATTACTTAG
62017539 ACATCCATAACTTTAACT
1 ACATCCATAACTTTAACT
*
62017557 ACATCCATAGCTTTAACT
1 ACATCCATAACTTTAACT
62017575 CATGCATGAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.36, C:0.28, G:0.03, T:0.33
Consensus pattern (18 bp):
ACATCCATAACTTTAACT
Found at i:62018458 original size:48 final size:48
Alignment explanation
Indices: 62018384--62018659 Score: 426
Period size: 48 Copynumber: 5.8 Consensus size: 48
62018374 TAAAGTACCA
* * *
62018384 ATGCCATGTCCCAGACAGGGTCTTACACTGGCACACATATCATCGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACAGGCACATATATCATCGCCG
* * * **
62018432 ATTCCATGTCCCAGACAAGGTCTTACACAAGCACATATATCATCGCTA
1 ATGCCATGTCCCAGACATGGTCTTACACAGGCACATATATCATCGCCG
**
62018480 ATGCCATGTCCCAGACATGGTCTTACACAGGCACATATATCATCATCG
1 ATGCCATGTCCCAGACATGGTCTTACACAGGCACATATATCATCGCCG
* *
62018528 ATGCCATGTCCCAGACATGGTCTTACACATGCACAAATATCATCGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACAGGCACATATATCATCGCCG
* *
62018576 ATGCCATGTCCCAGACATGGTCTTACACAGGAACATATATCATCACCG
1 ATGCCATGTCCCAGACATGGTCTTACACAGGCACATATATCATCGCCG
62018624 ATGCCATGTCCCAGACATGGTCTTACACAGGCACAT
1 ATGCCATGTCCCAGACATGGTCTTACACAGGCACAT
62018660 TTACCACGAT
Statistics
Matches: 205, Mismatches: 23, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
48 205 1.00
ACGTcount: A:0.29, C:0.30, G:0.17, T:0.23
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACACAGGCACATATATCATCGCCG
Found at i:62025209 original size:47 final size:47
Alignment explanation
Indices: 62025148--62025270 Score: 228
Period size: 47 Copynumber: 2.6 Consensus size: 47
62025138 GGTGCGAATG
* *
62025148 TCCGAACTCATTGAGTTGAGTCCTAGTTCGTGAAATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCA
62025195 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCA
62025242 TCCGAACTCGTTGAGTTGAGTCCGAGTTC
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC
62025271 ACTTATGGAT
Statistics
Matches: 74, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 74 1.00
ACGTcount: A:0.24, C:0.20, G:0.26, T:0.29
Consensus pattern (47 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCA
Found at i:62027149 original size:18 final size:18
Alignment explanation
Indices: 62027126--62027161 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
62027116 GGTTACTTAG
62027126 ACATCCATAGCTTTAACT
1 ACATCCATAGCTTTAACT
62027144 ACATCCATAGCTTTAACT
1 ACATCCATAGCTTTAACT
62027162 CATGCATGAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.33, C:0.28, G:0.06, T:0.33
Consensus pattern (18 bp):
ACATCCATAGCTTTAACT
Found at i:62028620 original size:79 final size:81
Alignment explanation
Indices: 62028520--62028704 Score: 238
Period size: 79 Copynumber: 2.3 Consensus size: 81
62028510 GCTCCTCGTT
*
62028520 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAAT-TCGCACAAATGCCTTCGGGA-CTTAACC
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCACAAATGCCTTC-GGATCTTAACC
* *
62028582 CGGATTTAGTAAC-TCGCA
63 CGGATATAGTAACTTAGCA
**
62028600 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAACCCGG
* *
62028664 ATATGGTCACTTAGCA
66 ATATAGTAACTTAGCA
62028680 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
62028705 CAGCATTCAA
Statistics
Matches: 93, Mismatches: 7, Indels: 10
0.85 0.06 0.09
Matches are distributed among these distances:
78 5 0.05
79 54 0.58
80 34 0.37
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATAGTAACTTAGCA
Found at i:62028704 original size:40 final size:40
Alignment explanation
Indices: 62028520--62028704 Score: 220
Period size: 40 Copynumber: 4.7 Consensus size: 40
62028510 GCTCCTCGTT
* *
62028520 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAATTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTACTTCGCA
* *
62028560 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAAC-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGT-ACTTCGCA
62028600 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTA-TCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTACT-TCGCA
* * *
62028639 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGT-ACTTCGCA
62028680 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
62028705 CAGCATTCAA
Statistics
Matches: 125, Mismatches: 10, Indels: 20
0.81 0.06 0.13
Matches are distributed among these distances:
38 3 0.02
39 30 0.24
40 77 0.62
41 14 0.11
42 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTACTTCGCA
Found at i:62036431 original size:41 final size:41
Alignment explanation
Indices: 62036384--62036572 Score: 183
Period size: 41 Copynumber: 4.6 Consensus size: 41
62036374 GCTCCTCGTT
*
62036384 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAATTCGCAA
1 CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAATTCGC-A
* * *
62036425 CAAATGCCTTCGGGACTTAACCCGGATT-TATTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAATTCGCA
* * **
62036465 CGAATGCCTTCGGGACTTAACCCGGAATTAGTA-TTCTTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-ATTA-TAGTAATTCGCA
* * * *
62036507 CAAATGCCTTC-GGATCTTAGTCCGGA-TATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTATAGT-AATTCGCA
62036548 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
62036573 CAGCATTCAA
Statistics
Matches: 125, Mismatches: 15, Indels: 17
0.80 0.10 0.11
Matches are distributed among these distances:
39 1 0.01
40 44 0.35
41 52 0.42
42 26 0.21
43 2 0.02
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (41 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAATTCGCA
Found at i:62038971 original size:48 final size:48
Alignment explanation
Indices: 62038900--62039266 Score: 547
Period size: 48 Copynumber: 7.7 Consensus size: 48
62038890 GTACTAATGT
* * *
62038900 CATGTCCCAGACATGGTCTTACACTGGCACACATATCATCGCCGATGC
1 CATGTCCCAGACATGGTCTTACACAGGCACATATATCATCGCTGATGC
* *
62038948 CATGTCCCAGACAAGGTCTTACACAGGCACATATATCATCGCTGATGT
1 CATGTCCCAGACATGGTCTTACACAGGCACATATATCATCGCTGATGC
* * * ** * *
62038996 CATATCCCAGACATGGTCTTACGCAGGCACATATATCGTTACCGATAC
1 CATGTCCCAGACATGGTCTTACACAGGCACATATATCATCGCTGATGC
*
62039044 CATGTCCCAGACATGGTCTTACACAGGCACATATATCATCGCTAATGC
1 CATGTCCCAGACATGGTCTTACACAGGCACATATATCATCGCTGATGC
*
62039092 CATGTCCCAG-CATGGTCTTACACAGGCACATATATCATCGCTAATGC
1 CATGTCCCAGACATGGTCTTACACAGGCACATATATCATCGCTGATGC
* * *
62039139 CATGTCTCAGACATGATCTTACACAGGCACATATATCATCGCCGATGC
1 CATGTCCCAGACATGGTCTTACACAGGCACATATATCATCGCTGATGC
*
62039187 CATGTCCCAGACATGGTCTTACATAGGCACATATATCATCGCTGATGC
1 CATGTCCCAGACATGGTCTTACACAGGCACATATATCATCGCTGATGC
* *
62039235 CATGTCCTAGACATGGTCTTAAACAGGCACAT
1 CATGTCCCAGACATGGTCTTACACAGGCACAT
62039267 TTAGCATGAT
Statistics
Matches: 285, Mismatches: 33, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
47 46 0.16
48 239 0.84
ACGTcount: A:0.28, C:0.29, G:0.18, T:0.25
Consensus pattern (48 bp):
CATGTCCCAGACATGGTCTTACACAGGCACATATATCATCGCTGATGC
Found at i:62039240 original size:191 final size:192
Alignment explanation
Indices: 62038893--62039266 Score: 561
Period size: 191 Copynumber: 2.0 Consensus size: 192
62038883 AATTAAAGTA
* * *
62038893 CTAATGTCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCGCCGATGCCATGTCCCAG
1 CTAATGCCATGTCCCAGACATGGTCTTACACAGGCACACATATCATCGCCAATGCCATGTCCCAG
* * * *
62038958 ACAAGGTCTTACACAGGCACATATATCATCGCTGATGTCATATCCCAGACATGGTCTTACGCAGG
66 ACAAGATCTTACACAGGCACATATATCATCGCCGATGCCATATCCCAGACATGGTCTTACACAGG
* * *
62039023 CACATATATCGTTACCGATACCATGTCCCAGACATGGTCTTACACAGGCACATATATCATCG
131 CACATATATCATCACCGATACCATGTCCCAGACATGGTCTTAAACAGGCACATATATCATCG
* * *
62039085 CTAATGCCATGTCCCAG-CATGGTCTTACACAGGCACATATATCATCGCTAATGCCATGTCTCAG
1 CTAATGCCATGTCCCAGACATGGTCTTACACAGGCACACATATCATCGCCAATGCCATGTCCCAG
* * *
62039149 ACATGATCTTACACAGGCACATATATCATCGCCGATGCCATGTCCCAGACATGGTCTTACATAGG
66 ACAAGATCTTACACAGGCACATATATCATCGCCGATGCCATATCCCAGACATGGTCTTACACAGG
* * * *
62039214 CACATATATCATCGCTGATGCCATGTCCTAGACATGGTCTTAAACAGGCACAT
131 CACATATATCATCACCGATACCATGTCCCAGACATGGTCTTAAACAGGCACAT
62039267 TTAGCATGAT
Statistics
Matches: 162, Mismatches: 20, Indels: 1
0.89 0.11 0.01
Matches are distributed among these distances:
191 146 0.90
192 16 0.10
ACGTcount: A:0.28, C:0.29, G:0.18, T:0.25
Consensus pattern (192 bp):
CTAATGCCATGTCCCAGACATGGTCTTACACAGGCACACATATCATCGCCAATGCCATGTCCCAG
ACAAGATCTTACACAGGCACATATATCATCGCCGATGCCATATCCCAGACATGGTCTTACACAGG
CACATATATCATCACCGATACCATGTCCCAGACATGGTCTTAAACAGGCACATATATCATCG
Found at i:62042052 original size:45 final size:45
Alignment explanation
Indices: 62041988--62042078 Score: 164
Period size: 45 Copynumber: 2.0 Consensus size: 45
62041978 ATCGTTCATC
* *
62041988 TTCAATCTTGATTTCTAACTACTTTTTTGTCTCTCATTTTTCTTA
1 TTCAATCTTGATTTCTAACTACTTTTTTCTCTCCCATTTTTCTTA
62042033 TTCAATCTTGATTTCTAACTACTTTTTTCTCTCCCATTTTTCTTA
1 TTCAATCTTGATTTCTAACTACTTTTTTCTCTCCCATTTTTCTTA
62042078 T
1 T
62042079 ACTCGTAAAC
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
45 44 1.00
ACGTcount: A:0.18, C:0.22, G:0.03, T:0.57
Consensus pattern (45 bp):
TTCAATCTTGATTTCTAACTACTTTTTTCTCTCCCATTTTTCTTA
Found at i:62042222 original size:12 final size:12
Alignment explanation
Indices: 62042205--62042229 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
62042195 TAATTTTTTT
62042205 AAAAAAATTCAA
1 AAAAAAATTCAA
62042217 AAAAAAATTCAA
1 AAAAAAATTCAA
62042229 A
1 A
62042230 CCGATACCAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.76, C:0.08, G:0.00, T:0.16
Consensus pattern (12 bp):
AAAAAAATTCAA
Found at i:62043764 original size:20 final size:20
Alignment explanation
Indices: 62043739--62043778 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
62043729 CTGTTTTTAC
62043739 ATATATTAATAAATTTATAT
1 ATATATTAATAAATTTATAT
62043759 ATATATTAATAAATTTATAT
1 ATATATTAATAAATTTATAT
62043779 TTTAATTGTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (20 bp):
ATATATTAATAAATTTATAT
Found at i:62043784 original size:16 final size:18
Alignment explanation
Indices: 62043734--62043778 Score: 54
Period size: 20 Copynumber: 2.4 Consensus size: 18
62043724 AAAAGCTGTT
* *
62043734 TTTACATATATTAATAAA
1 TTTATATATTTTAATAAA
62043752 TTTATATATATATTAATAAA
1 TTTATATAT-T-TTAATAAA
62043772 TTTATAT
1 TTTATAT
62043779 TTTAATTGTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
18 8 0.35
20 15 0.65
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (18 bp):
TTTATATATTTTAATAAA
Found at i:62045302 original size:93 final size:93
Alignment explanation
Indices: 62045173--62045358 Score: 293
Period size: 93 Copynumber: 2.0 Consensus size: 93
62045163 GAGCTGCCAG
* *
62045173 GAAATAATAGAAAAAAGATGAATAAACAATTAAACCCAAAACAAAATCTCTAATCAAAGTTCAAT
1 GAAATAATAGAAAAAAGATGAATAAACAATTAAACCCAAAACAAAATATCTAATCAAAGCTCAAT
*
62045238 CCTAA-TAAAGTAAATAAAGGCGAAGAA
66 CCTAACAAAAGTAAATAAAGGCGAAGAA
* * *
62045265 GAAATAATAGAAAAAAGGATGAATCAATAATTAAACCCAAAACAAAATATCTAATCAGAGCTCAA
1 GAAATAATAGAAAAAA-GATGAATAAACAATTAAACCCAAAACAAAATATCTAATCAAAGCTCAA
*
62045330 TCCTAACAAAAGTAAATAAAGGCTAAGAA
65 TCCTAACAAAAGTAAATAAAGGCGAAGAA
62045359 AAGGATTGCT
Statistics
Matches: 85, Mismatches: 7, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
92 16 0.19
93 49 0.58
94 20 0.24
ACGTcount: A:0.57, C:0.13, G:0.11, T:0.18
Consensus pattern (93 bp):
GAAATAATAGAAAAAAGATGAATAAACAATTAAACCCAAAACAAAATATCTAATCAAAGCTCAAT
CCTAACAAAAGTAAATAAAGGCGAAGAA
Found at i:62049984 original size:20 final size:20
Alignment explanation
Indices: 62049946--62049983 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
62049936 TTTTACTATG
*
62049946 GGATTTTCTCTTTCTTTTTC
1 GGATTTTCTCTTCCTTTTTC
62049966 GGATTTT-TCTTCCTTTTT
1 GGATTTTCTCTTCCTTTTT
62049984 TAACTTCATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.05, C:0.18, G:0.11, T:0.66
Consensus pattern (20 bp):
GGATTTTCTCTTCCTTTTTC
Found at i:62052928 original size:7 final size:7
Alignment explanation
Indices: 62052916--62052949 Score: 68
Period size: 7 Copynumber: 4.9 Consensus size: 7
62052906 TTAATCTAAT
62052916 CCAAAAA
1 CCAAAAA
62052923 CCAAAAA
1 CCAAAAA
62052930 CCAAAAA
1 CCAAAAA
62052937 CCAAAAA
1 CCAAAAA
62052944 CCAAAA
1 CCAAAA
62052950 GAAAACCAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 27 1.00
ACGTcount: A:0.71, C:0.29, G:0.00, T:0.00
Consensus pattern (7 bp):
CCAAAAA
Found at i:62055026 original size:3 final size:3
Alignment explanation
Indices: 62055007--62055076 Score: 53
Period size: 3 Copynumber: 25.0 Consensus size: 3
62054997 CTTTATTTCG
* *
62055007 AGA AGGA AGA AGG AGA AGA A-A AAA AGA A-A A-A AG- AGA AGA A-A
1 AGA A-GA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
* *
62055048 AAA AGA AG- AGA AGA AGA AGA AGG AGA AGA
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
62055077 CGGAGAAGGA
Statistics
Matches: 55, Mismatches: 6, Indels: 12
0.75 0.08 0.16
Matches are distributed among these distances:
2 12 0.22
3 40 0.73
4 3 0.05
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:62055044 original size:20 final size:21
Alignment explanation
Indices: 62055019--62055068 Score: 75
Period size: 20 Copynumber: 2.4 Consensus size: 21
62055009 AAGGAAGAAG
62055019 GAGAAGAAAAAAAGAA-AAAA
1 GAGAAGAAAAAAAGAAGAAAA
*
62055039 GAGAAGAAAAAAAGAAGAGAA
1 GAGAAGAAAAAAAGAAGAAAA
62055060 GAAGAAGAA
1 G-AGAAGAA
62055069 GGAGAAGACG
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
20 16 0.59
21 4 0.15
22 7 0.26
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (21 bp):
GAGAAGAAAAAAAGAAGAAAA
Found at i:62055048 original size:11 final size:11
Alignment explanation
Indices: 62055020--62055068 Score: 57
Period size: 11 Copynumber: 4.6 Consensus size: 11
62055010 AGGAAGAAGG
62055020 AGAAGAAAAAA
1 AGAAGAAAAAA
*
62055031 AG-A-AAAAAG
1 AGAAGAAAAAA
62055040 AGAAGAAAAAA
1 AGAAGAAAAAA
* *
62055051 AGAAGAGAAGA
1 AGAAGAAAAAA
62055062 AGAAGAA
1 AGAAGAA
62055069 GGAGAAGACG
Statistics
Matches: 31, Mismatches: 5, Indels: 4
0.77 0.12 0.10
Matches are distributed among these distances:
9 7 0.23
10 2 0.06
11 22 0.71
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (11 bp):
AGAAGAAAAAA
Found at i:62055076 original size:20 final size:17
Alignment explanation
Indices: 62055020--62055068 Score: 59
Period size: 16 Copynumber: 3.0 Consensus size: 17
62055010 AGGAAGAAGG
62055020 AGAAGA-AA-AAAAGAA
1 AGAAGAGAAGAAAAGAA
*
62055035 AAAAGAGAAGAAAA-AA
1 AGAAGAGAAGAAAAGAA
62055051 AGAAGAGAAGAAGAAGAA
1 AGAAGAGAAGAA-AAGAA
62055069 GGAGAAGACG
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
15 5 0.18
16 15 0.54
17 6 0.21
18 2 0.07
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (17 bp):
AGAAGAGAAGAAAAGAA
Found at i:62055159 original size:11 final size:12
Alignment explanation
Indices: 62055103--62055164 Score: 54
Period size: 14 Copynumber: 4.8 Consensus size: 12
62055093 ACTGGTGAGG
62055103 GAAGAAAAAAGAA
1 GAAGAAAAAAG-A
*
62055116 AAAGAAAAAGAGGA
1 GAAGAAAAA-A-GA
*
62055130 GAAGAAGAAGGAGA
1 GAAGAA-AA-AAGA
62055144 GAAGAAAAAAGA
1 GAAGAAAAAAGA
62055156 -AAGAAAAAA
1 GAAGAAAAAA
62055165 AAGGTAATTT
Statistics
Matches: 41, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
11 9 0.22
12 3 0.07
13 10 0.24
14 15 0.37
15 4 0.10
ACGTcount: A:0.73, C:0.00, G:0.27, T:0.00
Consensus pattern (12 bp):
GAAGAAAAAAGA
Found at i:62055567 original size:16 final size:16
Alignment explanation
Indices: 62055546--62055625 Score: 63
Period size: 16 Copynumber: 4.9 Consensus size: 16
62055536 CTATTTTATA
* *
62055546 AAAATAGTATAAAAAT
1 AAAATACTAAAAAAAT
62055562 AAAATACTAAAAAAAT
1 AAAATACTAAAAAAAT
*** * *
62055578 ATCTTAATGAAAAAAT
1 AAAATACTAAAAAAAT
*
62055594 AAAATACAAAAATAAAT
1 AAAATACTAAAA-AAAT
62055611 AAAATA-TGAAAAAAA
1 AAAATACT-AAAAAAA
62055626 ATATTTTTTG
Statistics
Matches: 48, Mismatches: 14, Indels: 4
0.73 0.21 0.06
Matches are distributed among these distances:
16 34 0.71
17 14 0.29
ACGTcount: A:0.71, C:0.04, G:0.04, T:0.21
Consensus pattern (16 bp):
AAAATACTAAAAAAAT
Found at i:62055620 original size:32 final size:32
Alignment explanation
Indices: 62055556--62055624 Score: 86
Period size: 32 Copynumber: 2.2 Consensus size: 32
62055546 AAAATAGTAT
* ***
62055556 AAAAATAAAATACTAAAAAAATATCTTAATGA
1 AAAAATAAAATACAAAAAAAATAAAATAATGA
62055588 AAAAATAAAATACAAAAATAAATAAAAT-ATGA
1 AAAAATAAAATACAAAAA-AAATAAAATAATGA
62055620 AAAAA
1 AAAAA
62055625 AATATTTTTT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
32 26 0.81
33 6 0.19
ACGTcount: A:0.72, C:0.04, G:0.03, T:0.20
Consensus pattern (32 bp):
AAAAATAAAATACAAAAAAAATAAAATAATGA
Found at i:62055622 original size:17 final size:17
Alignment explanation
Indices: 62055587--62055628 Score: 57
Period size: 17 Copynumber: 2.5 Consensus size: 17
62055577 TATCTTAATG
62055587 AAAAAATAAAATACAAA
1 AAAAAATAAAATACAAA
* **
62055604 AATAAATAAAATATGAA
1 AAAAAATAAAATACAAA
62055621 AAAAAATA
1 AAAAAATA
62055629 TTTTTTGGGG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.79, C:0.02, G:0.02, T:0.17
Consensus pattern (17 bp):
AAAAAATAAAATACAAA
Found at i:62055821 original size:151 final size:152
Alignment explanation
Indices: 62055663--62057413 Score: 2764
Period size: 151 Copynumber: 11.6 Consensus size: 152
62055653 GCCGATTTTT
62055663 TACTAAAATAATATAAAAAATAAAATATGAAAATAGTATATTTTAAAAAATAAAATCCAAAAATT
1 TACTAAAATAATATAAAAAATAAAATATGAAAATAGTATATTTTAAAAAATAAAATCCAAAAATT
* * * *
62055728 TTAAAAATACAAATAAAGGGCCAAAATCAGGGTTATTTACTAAATTAATATAAAAAAATATTAAA
66 TTAAAAATACAAACAAAGGGCCAAAATCAGGGTTATTTACTAAATTAATATTAAAAAACACTAAA
62055793 ATAATACA-TTGAAACATTATG
131 ATAATACATTTGAAACATTATG
* *
62055814 TACTAAAATAATATAAAAAATAAAATATGAAAATAGTATATTTT-AAAAATAAAATTCGAAAATT
1 TACTAAAATAATATAAAAAATAAAATATGAAAATAGTATATTTTAAAAAATAAAATCCAAAAATT
* *
62055878 CTAAAAATACAAACAAAGGGCCAAAATAAGGGTTATTTACTAAATTAATATTAAAAAACACTAAA
66 TTAAAAATACAAACAAAGGGCCAAAATCAGGGTTATTTACTAAATTAATATTAAAAAACACTAAA
* *
62055943 ATAATATATTTGAAAAATTATG
131 ATAATACATTTGAAACATTATG
*
62055965 TACTAAAATAATATAAAAAAATAAAATATGAAAATAGTATATTTTAAAAAATAAAATCC-GAAAT
1 TACTAAAATAATAT-AAAAAATAAAATATGAAAATAGTATATTTTAAAAAATAAAATCCAAAAAT
* * * *
62056029 TTTAAAAATACAAACAAAGGGCCAAAATAAGGATTATTTAATAAATTAATATTAAAAAAATACTA
65 TTTAAAAATACAAACAAAGGGCCAAAATCAGGGTTATTTACTAAATTAATATT-AAAAAACACTA
62056094 AAATAATACATTTGAAACATTATG
129 AAATAATACATTTGAAACATTATG
** *
62056118 TACTAAAATAATATAAAAAATAAAATACAAAAATAATATATTTTAAAAAATAAAATCCAAAAATT
1 TACTAAAATAATATAAAAAATAAAATATGAAAATAGTATATTTTAAAAAATAAAATCCAAAAATT
* * *
62056183 TTAAAAATACAAATAAAGGGCCAAAATCAGGGTTATTTACTAAATTAATA-TAAAAAATATTAAA
66 TTAAAAATACAAACAAAGGGCCAAAATCAGGGTTATTTACTAAATTAATATTAAAAAACACTAAA
62056247 ATAATACATTTGAAACATTATG
131 ATAATACATTTGAAACATTATG
***
62056269 TACTAAAATAATATAAAAAATAAAATATGAAAATAGTATATTTTAAAAAATAAAATTTGAAAATT
1 TACTAAAATAATATAAAAAATAAAATATGAAAATAGTATATTTTAAAAAATAAAATCCAAAAATT
* *
62056334 CTAAAAATACAAACAAAGGGCCAAAATAAGGGTTATTTACTAAATTAATATT-AAAAACACTAAA
66 TTAAAAATACAAACAAAGGGCCAAAATCAGGGTTATTTACTAAATTAATATTAAAAAACACTAAA
* *
62056398 ATAATATATTTGAAAAATTATG
131 ATAATACATTTGAAACATTATG
62056420 TACTAAAATAATATAAAAAATAAAATATGAAAATAGTATATTTTAAAAAATAAAATCC-AAAATT
1 TACTAAAATAATATAAAAAATAAAATATGAAAATAGTATATTTTAAAAAATAAAATCCAAAAATT
* * * *
62056484 TTAAAAATACAAACAAAGGGCCAAAATAAGGATTATTTAATAAATTAATATTAAAAAATACTAAA
66 TTAAAAATACAAACAAAGGGCCAAAATCAGGGTTATTTACTAAATTAATATTAAAAAACACTAAA
62056549 ATAATACATTTGAAACATTATG
131 ATAATACATTTGAAACATTATG
*
62056571 TACTAAAATAATATAAAAAATAAAATACGAAAATAGTATATTTTAAAAAATAAAATCCAAAAATT
1 TACTAAAATAATATAAAAAATAAAATATGAAAATAGTATATTTTAAAAAATAAAATCCAAAAATT
*
62056636 TTAAAAATACAAACAAAGGGCCAAAATCAGGGTTATTTACTAAATTAATATTAAAAAACGCTAAA
66 TTAAAAATACAAACAAAGGGCCAAAATCAGGGTTATTTACTAAATTAATATTAAAAAACACTAAA
* *
62056701 ATAATACATTTAAAACATTATA
131 ATAATACATTTGAAACATTATG
* **
62056723 TACTAAAATAATAT--AAAAT--AA-A--AAAATAATATATTTTAAAAAATAAAATCTGAAAATT
1 TACTAAAATAATATAAAAAATAAAATATGAAAATAGTATATTTTAAAAAATAAAATCCAAAAATT
* *
62056781 TTAAAAATACAAACAAAGGGCCAAAATTAGAGTTATTTACTAAATTAATATTAAAAAA-ACTAAA
66 TTAAAAATACAAACAAAGGGCCAAAATCAGGGTTATTTACTAAATTAATATTAAAAAACACTAAA
*
62056845 ATAATACATTTGAAACATTATT
131 ATAATACATTTGAAACATTATG
*
62056867 TACTAAAATAATATAAAAAAATAAAATACGAAAATAGTATATTTT-AAAAATAAAATCCAAAAAT
1 TACTAAAATAATAT-AAAAAATAAAATATGAAAATAGTATATTTTAAAAAATAAAATCCAAAAAT
* * *
62056931 TTTAAAAATACAAACAAATGGCCAAAATTAGAGTTATTTACTAAATTAATA-TAAAAAACACTAA
65 TTTAAAAATACAAACAAAGGGCCAAAATCAGGGTTATTTACTAAATTAATATTAAAAAACACTAA
*
62056995 AATAATATATTTGAAACATTATG
130 AATAATACATTTGAAACATTATG
* * *
62057018 TACTAAAATACTATAAAAAATAAAATATGAAAATAGTATATTTTAAAAAATGAAATCTAAAAATT
1 TACTAAAATAATATAAAAAATAAAATATGAAAATAGTATATTTTAAAAAATAAAATCCAAAAATT
* ** *
62057083 TTAAAAATACAAATAAAAAGCTAAAATCAGGGTTATTTACTAAATTAATATTAAAAAACACTAAA
66 TTAAAAATACAAACAAAGGGCCAAAATCAGGGTTATTTACTAAATTAATATTAAAAAACACTAAA
*
62057148 ATAATACATTTGAAGCATTATG
131 ATAATACATTTGAAACATTATG
* * *
62057170 TACTAAAATAATATAAAAAATAAAATACGAAAATAGTATATTTTAAAAAATAAAATTCGAAAATT
1 TACTAAAATAATATAAAAAATAAAATATGAAAATAGTATATTTTAAAAAATAAAATCCAAAAATT
* *
62057235 TTAAAAATACAAACAAATGGCCAAAATCAAGGTTATTTACTAAATTAATA-TAAAAAACACTAAA
66 TTAAAAATACAAACAAAGGGCCAAAATCAGGGTTATTTACTAAATTAATATTAAAAAACACTAAA
*
62057299 ATAATACATTTGAAATATTATG
131 ATAATACATTTGAAACATTATG
* * **
62057321 TACTAAAATAATAT-AAAAATAAAATACGAAAATAGTATACTTTAAAAAATAAAATCTGAAAATT
1 TACTAAAATAATATAAAAAATAAAATATGAAAATAGTATATTTTAAAAAATAAAATCCAAAAATT
62057385 TTAAAAATACAAACAAAGGGCCAAAATCA
66 TTAAAAATACAAACAAAGGGCCAAAATCA
62057414 TTGAATAAAT
Statistics
Matches: 1482, Mismatches: 99, Indels: 39
0.91 0.06 0.02
Matches are distributed among these distances:
144 39 0.03
145 89 0.06
147 6 0.00
148 2 0.00
149 2 0.00
150 256 0.17
151 600 0.40
152 379 0.26
153 109 0.07
ACGTcount: A:0.58, C:0.07, G:0.06, T:0.29
Consensus pattern (152 bp):
TACTAAAATAATATAAAAAATAAAATATGAAAATAGTATATTTTAAAAAATAAAATCCAAAAATT
TTAAAAATACAAACAAAGGGCCAAAATCAGGGTTATTTACTAAATTAATATTAAAAAACACTAAA
ATAATACATTTGAAACATTATG
Found at i:62056139 original size:12 final size:13
Alignment explanation
Indices: 62056122--62056157 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
62056112 ATTATGTACT
62056122 AAAATAATATA-A
1 AAAATAATATACA
*
62056134 AAAATAAAATACA
1 AAAATAATATACA
62056147 AAAATAATATA
1 AAAATAATATA
62056158 TTTTAAAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
12 10 0.48
13 11 0.52
ACGTcount: A:0.75, C:0.03, G:0.00, T:0.22
Consensus pattern (13 bp):
AAAATAATATACA
Found at i:62057202 original size:25 final size:27
Alignment explanation
Indices: 62057174--62057233 Score: 70
Period size: 30 Copynumber: 2.2 Consensus size: 27
62057164 ATTATGTACT
62057174 AAAATA-ATA-TAAAAAATAAAATACG
1 AAAATAGATATTAAAAAATAAAATACG
*
62057199 AAAATAGTATATTTTAAAAAATAAAATTCG
1 AAAATAG-ATA--TTAAAAAATAAAATACG
62057229 AAAAT
1 AAAAT
62057234 TTTAAAAATA
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
25 6 0.21
27 3 0.10
30 20 0.69
ACGTcount: A:0.65, C:0.03, G:0.05, T:0.27
Consensus pattern (27 bp):
AAAATAGATATTAAAAAATAAAATACG
Found at i:62059370 original size:26 final size:26
Alignment explanation
Indices: 62059334--62059417 Score: 82
Period size: 26 Copynumber: 3.1 Consensus size: 26
62059324 GGAACAAACC
62059334 TTAAATACATTACAACATTAATCTAA
1 TTAAATACATTACAACATTAATCTAA
*
62059360 TTAAATACATTA-ATCTAATTGGAA-CATTAA
1 TTAAATACATTACAAC--ATT--AATC--TAA
*
62059390 TTAAACACATTACAACATTAATCTAA
1 TTAAATACATTACAACATTAATCTAA
62059416 TT
1 TT
62059418 GGGACAAACT
Statistics
Matches: 47, Mismatches: 3, Indels: 16
0.71 0.05 0.24
Matches are distributed among these distances:
25 2 0.04
26 17 0.36
27 5 0.11
28 2 0.04
29 5 0.11
30 14 0.30
31 2 0.04
ACGTcount: A:0.48, C:0.14, G:0.02, T:0.36
Consensus pattern (26 bp):
TTAAATACATTACAACATTAATCTAA
Found at i:62061295 original size:49 final size:49
Alignment explanation
Indices: 62061074--62061629 Score: 884
Period size: 49 Copynumber: 11.6 Consensus size: 49
62061064 CCCTTCGGGA
* * * *
62061074 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* * *
62061121 CCTGTCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* *
62061168 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
62061215 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
62061262 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
62061311 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
62061360 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
62061407 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
62061456 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
62061505 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
62061552 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
62061601 CTTATCACATATATATACACTTTCACATT
1 CTTATCACATATATATACACTTTCACATT
62061630 TATTCAAATA
Statistics
Matches: 481, Mismatches: 20, Indels: 14
0.93 0.04 0.03
Matches are distributed among these distances:
46 1 0.00
47 225 0.47
49 255 0.53
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.34
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
Found at i:62061312 original size:96 final size:97
Alignment explanation
Indices: 62061074--62061629 Score: 887
Period size: 96 Copynumber: 5.8 Consensus size: 97
62061064 CCCTTCGGGA
* * * * * *
62061074 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCAC-ATATATA
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACAATATATA
62061136 CACTTTCACATTCATCACATCGGCCATTAGGC
66 CACTTTCACATTCATCACATCGGCCATTAGGC
* *
62061168 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCAC-ATATATA
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACAATATATA
62061230 CACTTTCACATTCATCACATCGGCCATTAGGC
66 CACTTTCACATTCATCACATCGGCCATTAGGC
*
62061262 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACA-ATATAT
* *
62061327 ACACTTTCACATTCATCACATTGGCCATTCGGC
65 ACACTTTCACATTCATCACATCGGCCATTAGGC
*
62061360 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACA-ATATAT
* *
62061423 ACACTTTCACATTCATCACATTGGCCATTCGGC
65 ACACTTTCACATTCATCACATCGGCCATTAGGC
*
62061456 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCAC-ATATATA
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACAATATATA
62061520 CACTTTCACATTCATCACATCGGCCATTAGGC
66 CACTTTCACATTCATCACATCGGCCATTAGGC
62061552 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACA-ATATAT
62061617 ACACTTTCACATT
65 ACACTTTCACATT
62061630 TATTCAAATA
Statistics
Matches: 432, Mismatches: 20, Indels: 16
0.92 0.04 0.03
Matches are distributed among these distances:
93 1 0.00
94 91 0.21
96 231 0.53
98 109 0.25
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.34
Consensus pattern (97 bp):
CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACAATATATA
CACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:62061381 original size:145 final size:145
Alignment explanation
Indices: 62061074--62061629 Score: 958
Period size: 145 Copynumber: 3.9 Consensus size: 145
62061064 CCCTTCGGGA
* * * * * * * *
62061074 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCAC--ATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
*
62061137 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCA
66 ACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCA
* * *
62061200 CATCGGCTATTAGGC
131 CATTGGCCATTCGGC
62061215 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
*
62061280 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATATACACTTTCACATTCATCA
66 ACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCA
62061345 CATTGGCCATTCGGC
131 CATTGGCCATTCGGC
62061360 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
*
62061425 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATATACACTTTCACATTCATCA
66 ACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCA
62061490 CATTGGCCATTCGGC
131 CATTGGCCATTCGGC
62061505 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
62061570 ACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACTTTCACATT
66 ACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACTTTCACATT
62061630 TATTCAAATA
Statistics
Matches: 397, Mismatches: 14, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
141 47 0.12
143 45 0.11
145 305 0.77
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.34
Consensus pattern (145 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
ACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCA
CATTGGCCATTCGGC
Found at i:62065722 original size:20 final size:20
Alignment explanation
Indices: 62065697--62065737 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
62065687 AGGCACTACA
62065697 ACTGTGTAATCCACTAATAT
1 ACTGTGTAATCCACTAATAT
62065717 ACTGTGTAATCCACTAATAT
1 ACTGTGTAATCCACTAATAT
62065737 A
1 A
62065738 TTCATGCTAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.37, C:0.20, G:0.10, T:0.34
Consensus pattern (20 bp):
ACTGTGTAATCCACTAATAT
Found at i:62067573 original size:39 final size:39
Alignment explanation
Indices: 62067530--62067712 Score: 217
Period size: 39 Copynumber: 4.7 Consensus size: 39
62067520 AATACAAATC
* *
62067530 AACAATAATAATAACTAATAATAATTAGGGTTTTTTACT
1 AACAATAATAATAACTAATAATAATAAGAGTTTTTTACT
* ** *
62067569 AACAATAATAACCAAC-AATCCTAATAATAGTTTTTTACT
1 AACAATAATAA-TAACTAATAATAATAAGAGTTTTTTACT
* * *
62067608 AACAATAATAATAACTAACAATAATTAGGGTTTTTTACT
1 AACAATAATAATAACTAATAATAATAAGAGTTTTTTACT
* ** *
62067647 AACAATAATAACCAAC-AATCCTAATAATAGTTTTTTACT
1 AACAATAATAA-TAACTAATAATAATAAGAGTTTTTTACT
62067686 AACAATAATAATAACTAATAATAATAA
1 AACAATAATAATAACTAATAATAATAA
62067713 CTAACAACAA
Statistics
Matches: 117, Mismatches: 23, Indels: 8
0.79 0.16 0.05
Matches are distributed among these distances:
38 6 0.05
39 105 0.90
40 6 0.05
ACGTcount: A:0.49, C:0.13, G:0.04, T:0.34
Consensus pattern (39 bp):
AACAATAATAATAACTAATAATAATAAGAGTTTTTTACT
Found at i:62067615 original size:78 final size:78
Alignment explanation
Indices: 62067530--62067710 Score: 353
Period size: 78 Copynumber: 2.3 Consensus size: 78
62067520 AATACAAATC
62067530 AACAATAATAATAACTAATAATAATTAGGGTTTTTTACTAACAATAATAACCAACAATCCTAATA
1 AACAATAATAATAACTAATAATAATTAGGGTTTTTTACTAACAATAATAACCAACAATCCTAATA
62067595 ATAGTTTTTTACT
66 ATAGTTTTTTACT
*
62067608 AACAATAATAATAACTAACAATAATTAGGGTTTTTTACTAACAATAATAACCAACAATCCTAATA
1 AACAATAATAATAACTAATAATAATTAGGGTTTTTTACTAACAATAATAACCAACAATCCTAATA
62067673 ATAGTTTTTTACT
66 ATAGTTTTTTACT
62067686 AACAATAATAATAACTAATAATAAT
1 AACAATAATAATAACTAATAATAAT
62067711 AACTAACAAC
Statistics
Matches: 101, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
78 101 1.00
ACGTcount: A:0.49, C:0.13, G:0.04, T:0.34
Consensus pattern (78 bp):
AACAATAATAATAACTAATAATAATTAGGGTTTTTTACTAACAATAATAACCAACAATCCTAATA
ATAGTTTTTTACT
Found at i:62067707 original size:13 final size:13
Alignment explanation
Indices: 62067685--62067716 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
62067675 AGTTTTTTAC
62067685 TAAC-AATAATAA
1 TAACTAATAATAA
62067697 TAACTAATAATAA
1 TAACTAATAATAA
62067710 TAACTAA
1 TAACTAA
62067717 CAACAAAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.62, C:0.09, G:0.00, T:0.28
Consensus pattern (13 bp):
TAACTAATAATAA
Found at i:62067708 original size:16 final size:17
Alignment explanation
Indices: 62067683--62067722 Score: 57
Period size: 16 Copynumber: 2.5 Consensus size: 17
62067673 ATAGTTTTTT
62067683 ACTAACAATAATAA-TA
1 ACTAACAATAATAACTA
*
62067699 ACTAATAATAATAACTA
1 ACTAACAATAATAACTA
62067716 AC-AACAA
1 ACTAACAA
62067723 AAAAAAATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
16 17 0.81
17 4 0.19
ACGTcount: A:0.62, C:0.15, G:0.00, T:0.23
Consensus pattern (17 bp):
ACTAACAATAATAACTA
Found at i:62067732 original size:78 final size:78
Alignment explanation
Indices: 62067572--62067732 Score: 196
Period size: 78 Copynumber: 2.1 Consensus size: 78
62067562 TTTTACTAAC
* *
62067572 AATAATAACCAACAATCCTAATAATAGTTTTTTACTAACAATAATAATAACTAACAATAATTAGG
1 AATAATAACCAACAATCCTAATAATAGTTTTTTACTAACAATAATAATAACTAACAATAATAACG
******* ** *
62067637 GTTTTTTACTAAC
66 AACAACAAAAAAA
* *
62067650 AATAATAACCAACAATCCTAATAATAGTTTTTTACTAACAATAATAATAACTAATAATAATAACT
1 AATAATAACCAACAATCCTAATAATAGTTTTTTACTAACAATAATAATAACTAACAATAATAACG
62067715 AACAACAAAAAAA
66 AACAACAAAAAAA
62067728 AATAA
1 AATAA
62067733 AAAAATAACA
Statistics
Matches: 69, Mismatches: 14, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
78 69 1.00
ACGTcount: A:0.53, C:0.14, G:0.03, T:0.30
Consensus pattern (78 bp):
AATAATAACCAACAATCCTAATAATAGTTTTTTACTAACAATAATAATAACTAACAATAATAACG
AACAACAAAAAAA
Found at i:62068219 original size:23 final size:22
Alignment explanation
Indices: 62068180--62068224 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 22
62068170 TAAAAAAAAC
*
62068180 CCTTTTCTTCTTCTTCTTTTCT
1 CCTTTTCTTCTTCTTCTCTTCT
*
62068202 CCTTTTCTTTCTTTTTCTCTTCT
1 CCTTTTC-TTCTTCTTCTCTTCT
62068225 TCTCTTTGCT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 7 0.35
23 13 0.65
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (22 bp):
CCTTTTCTTCTTCTTCTCTTCT
Found at i:62068495 original size:349 final size:352
Alignment explanation
Indices: 62067833--62068525 Score: 1142
Period size: 353 Copynumber: 2.0 Consensus size: 352
62067823 CCTCCTCATC
62067833 CTTCTTCTTCTCTTCTCCTTTTCTTTCTTTTTCTCTTCTTCTAATTGCTGCTGCTTCTTGCTTCC
1 CTTCTTCTTCTCTTCTCCTTTTCTTTCTTTTTCTCTTCTTCTAATTGCTGCTGCTTCTTGCTTCC
* *
62067898 GGAGTTGCAGCTTGAATTTTTATACTGCTTAGGTGCCGCCTGTGCCAGAGGAACAACCGATGCCG
66 GGAGTTGCAACTTCAATTTTTATACTGCTTAGGTGCCGCCTGTGCCAGAGGAACAACCGATGCCG
* *
62067963 CCTCTGGCACCCCCTCCATCCCTTTTTTTTATATTTTTATTTTTTTTCGTGTTCACTTTTTTATA
131 CCTCTGGCACCCCCTCCATCCATTTTTTTTATATTTTTATTTTTATTC-TGTTCACTTTTTTATA
* *
62068028 AATAGAAAATGGCAGAGGAAATATCAGACCAAGGTGGTCACGCCACTGCCATAGGCGGCACCACC
195 AACAGAAAATGGCAGAGGAAATATCAGACCAAGGTGGTCACGCCACTGCCATAGGCGACACCACC
* *
62068093 TTGGGATGTACCATTTTGGTACATACTTTTTCTGTAATACTATTTTAGTATTATTTTATTTTTTT
260 CTAGGATGTACCATTTTGGTACATACTTTTTCTGTAATACTATTTTAGTATTATTTTATTTTTTT
62068158 GTCTTATTTTTGTAAAAAAAACCCTTTT
325 GTCTTATTTTTGTAAAAAAAACCCTTTT
* **
62068186 CTTCTTCTTCTTTTCTCCTTTTCTTTCTTTTTCTCTTCTTCTCTTTGCTGCTGCTTCTTGCTTCC
1 CTTCTTCTTCTCTTCTCCTTTTCTTTCTTTTTCTCTTCTTCTAATTGCTGCTGCTTCTTGCTTCC
* * * **
62068251 GGAGTTGCAACTTCAATTTTTATACTGCTTAGGTGCCGCCTGTGCCAGAGGCACAATCGGTGCTT
66 GGAGTTGCAACTTCAATTTTTATACTGCTTAGGTGCCGCCTGTGCCAGAGGAACAACCGATGCCG
* *
62068316 CCTCTGGCACCCCCTCCATCCATTTTTTTTCA-ATTTTT-TTTTTATT-T-TTCATTTTTTTTTA
131 CCTCTGGCACCCCCTCCATCCATTTTTTTT-ATATTTTTATTTTTATTCTGTTCACTTTTTTATA
* *
62068377 AACAGAAAATGGCAGAGGAAATGTCAGACCAGGGTGGTCACGCCACTGCCATAGGCGACACCACC
195 AACAGAAAATGGCAGAGGAAATATCAGACCAAGGTGGTCACGCCACTGCCATAGGCGACACCACC
* *
62068442 CTAGGATGTACCATTTTGGTACATACTTTTTTTGTTATACTATTTTAGTATTATTTTATTTTTTT
260 CTAGGATGTACCATTTTGGTACATACTTTTTCTGTAATACTATTTTAGTATTATTTTATTTTTTT
62068507 GTCTTATTTTTGTAAAAAA
325 GTCTTATTTTTGTAAAAAA
62068526 CCCTAAATTT
Statistics
Matches: 317, Mismatches: 22, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
349 153 0.48
350 1 0.00
352 7 0.02
353 155 0.49
354 1 0.00
ACGTcount: A:0.19, C:0.23, G:0.15, T:0.43
Consensus pattern (352 bp):
CTTCTTCTTCTCTTCTCCTTTTCTTTCTTTTTCTCTTCTTCTAATTGCTGCTGCTTCTTGCTTCC
GGAGTTGCAACTTCAATTTTTATACTGCTTAGGTGCCGCCTGTGCCAGAGGAACAACCGATGCCG
CCTCTGGCACCCCCTCCATCCATTTTTTTTATATTTTTATTTTTATTCTGTTCACTTTTTTATAA
ACAGAAAATGGCAGAGGAAATATCAGACCAAGGTGGTCACGCCACTGCCATAGGCGACACCACCC
TAGGATGTACCATTTTGGTACATACTTTTTCTGTAATACTATTTTAGTATTATTTTATTTTTTTG
TCTTATTTTTGTAAAAAAAACCCTTTT
Found at i:62069890 original size:11 final size:11
Alignment explanation
Indices: 62069874--62069902 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
62069864 ATAACTTAAG
62069874 AAACTTTCACA
1 AAACTTTCACA
62069885 AAACTTTCACA
1 AAACTTTCACA
62069896 AAACTTT
1 AAACTTT
62069903 GAATTTTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.45, C:0.24, G:0.00, T:0.31
Consensus pattern (11 bp):
AAACTTTCACA
Found at i:62072254 original size:31 final size:31
Alignment explanation
Indices: 62072216--62072276 Score: 122
Period size: 31 Copynumber: 2.0 Consensus size: 31
62072206 TAATTTTCGA
62072216 TGCTAATCACTTAAGGAAGATGATGATATTG
1 TGCTAATCACTTAAGGAAGATGATGATATTG
62072247 TGCTAATCACTTAAGGAAGATGATGATATT
1 TGCTAATCACTTAAGGAAGATGATGATATT
62072277 ATGTTATTTT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.10, G:0.21, T:0.33
Consensus pattern (31 bp):
TGCTAATCACTTAAGGAAGATGATGATATTG
Found at i:62076834 original size:24 final size:24
Alignment explanation
Indices: 62076802--62076851 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
62076792 TCGGGCAGCA
62076802 TATTATGCGTATTATAGATATGTG
1 TATTATGCGTATTATAGATATGTG
62076826 TATTATGCGTATTATAGATATGTG
1 TATTATGCGTATTATAGATATGTG
62076850 TA
1 TA
62076852 CTCTTTTTCC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.30, C:0.04, G:0.20, T:0.46
Consensus pattern (24 bp):
TATTATGCGTATTATAGATATGTG
Found at i:62077708 original size:14 final size:15
Alignment explanation
Indices: 62077691--62077723 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
62077681 AGTGAAAATT
62077691 CATG-CTTCAATCAC
1 CATGTCTTCAATCAC
*
62077705 CATGTTTTCAATCAC
1 CATGTCTTCAATCAC
62077720 CATG
1 CATG
62077724 ATATCACTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 4 0.24
15 13 0.76
ACGTcount: A:0.27, C:0.30, G:0.09, T:0.33
Consensus pattern (15 bp):
CATGTCTTCAATCAC
Found at i:62081901 original size:25 final size:25
Alignment explanation
Indices: 62081853--62081901 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
62081843 CATAATTGAA
* * *
62081853 ATGAAATGGATTGATTTTGTATATT
1 ATGAAATAGATTGATTATGAATATT
*
62081878 ATGAAATATATTGATTATGAATAT
1 ATGAAATAGATTGATTATGAATAT
62081902 ATGTGTATTG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.39, C:0.00, G:0.16, T:0.45
Consensus pattern (25 bp):
ATGAAATAGATTGATTATGAATATT
Found at i:62082407 original size:19 final size:18
Alignment explanation
Indices: 62082359--62082414 Score: 53
Period size: 18 Copynumber: 3.1 Consensus size: 18
62082349 AATAAAAAAT
62082359 ATGAGAAA--AGATTATGA
1 ATGAGAAATGAGA-TATGA
62082376 GATGAGAAATGAGATATGA
1 -ATGAGAAATGAGATATGA
* *
62082395 ATGATAAATTGAGATGTGA
1 ATGAGAAA-TGAGATATGA
62082414 A
1 A
62082415 ACTTGAATGA
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
18 15 0.45
19 15 0.45
20 3 0.09
ACGTcount: A:0.48, C:0.00, G:0.27, T:0.25
Consensus pattern (18 bp):
ATGAGAAATGAGATATGA
Found at i:62086891 original size:19 final size:19
Alignment explanation
Indices: 62086864--62086904 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
62086854 TTAAGAATGA
62086864 TTTTATCTCAAAAGTATTT
1 TTTTATCTCAAAAGTATTT
* *
62086883 TTTTGTCTCAAAAGTGTTT
1 TTTTATCTCAAAAGTATTT
62086902 TTT
1 TTT
62086905 CCCAACAATG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.24, C:0.10, G:0.10, T:0.56
Consensus pattern (19 bp):
TTTTATCTCAAAAGTATTT
Found at i:62087719 original size:20 final size:21
Alignment explanation
Indices: 62087694--62087737 Score: 63
Period size: 20 Copynumber: 2.1 Consensus size: 21
62087684 ATTTTTAATC
62087694 TTAAAATAAATTTT-AATTTT
1 TTAAAATAAATTTTGAATTTT
* *
62087714 TTAAAATAATTTTTGTATTTT
1 TTAAAATAAATTTTGAATTTT
62087735 TTA
1 TTA
62087738 GAATTTTTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 13 0.62
21 8 0.38
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (21 bp):
TTAAAATAAATTTTGAATTTT
Found at i:62092089 original size:47 final size:48
Alignment explanation
Indices: 62092033--62092189 Score: 162
Period size: 47 Copynumber: 3.3 Consensus size: 48
62092023 GAGTCTTAAT
62092033 CGATGCATGTCCCAGACACGTCTTACACTGGCTA-TCATCATCGAGGC
1 CGATGCATGTCCCAGACACGTCTTACACTGGCTACTCATCATCGAGGC
* * * * *
62092080 CGATGCATGTCCTAGACATGTCTTACACTGGC-ACTAATC-TCTACGC
1 CGATGCATGTCCCAGACACGTCTTACACTGGCTACTCATCATCGAGGC
* * * * * *
62092126 CGATGCCATGTCCTAAACATGGTCTTACACTAG-TACTCATAAT-GCGGC
1 CGATG-CATGTCCCAGACA-CGTCTTACACTGGCTACTCATCATCGAGGC
62092174 CGATGCATGTCCCAGA
1 CGATGCATGTCCCAGA
62092190 TGTAACACCC
Statistics
Matches: 90, Mismatches: 15, Indels: 10
0.78 0.13 0.09
Matches are distributed among these distances:
46 11 0.12
47 55 0.61
48 23 0.26
49 1 0.01
ACGTcount: A:0.25, C:0.30, G:0.20, T:0.25
Consensus pattern (48 bp):
CGATGCATGTCCCAGACACGTCTTACACTGGCTACTCATCATCGAGGC
Found at i:62092176 original size:48 final size:47
Alignment explanation
Indices: 62092077--62092185 Score: 123
Period size: 48 Copynumber: 2.3 Consensus size: 47
62092067 TCATCATCGA
* * **
62092077 GGCCGATGCATGTCCTAGACATGTCTTACACTGGCACTAATCTCTAC
1 GGCCGATGCATGTCCTAAACATGTCTTACACTAGCACTAATCAATAC
* * *
62092124 -GCCGATGCCATGTCCTAAACATGGTCTTACACTAGTACTCAT-AATGC
1 GGCCGATG-CATGTCCTAAACAT-GTCTTACACTAGCACTAATCAATAC
62092171 GGCCGATGCATGTCC
1 GGCCGATGCATGTCC
62092186 CAGATGTAAC
Statistics
Matches: 52, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
46 7 0.13
47 22 0.42
48 23 0.44
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (47 bp):
GGCCGATGCATGTCCTAAACATGTCTTACACTAGCACTAATCAATAC
Found at i:62093565 original size:43 final size:43
Alignment explanation
Indices: 62093421--62093574 Score: 136
Period size: 43 Copynumber: 3.6 Consensus size: 43
62093411 ACTAAGTACA
* * *
62093421 ATGCCGATGTCCCAGACGTGGTCTTACATGT-AAT-TCAATATCG
1 ATGCCTATGTCCCAGACATGGTCTTACACGTAAATCTC-A-ATCG
* * * *
62093464 ATGCCTCTGTCCTAGACAGGGTCTTACACG-AAATC-GAATTCG
1 ATGCCTATGTCCCAGACATGGTCTTACACGTAAATCTCAA-TCG
* * *
62093506 ATGCCAATGTTCCAGACATGGTCTTATACGTAAATCTCAATCG
1 ATGCCTATGTCCCAGACATGGTCTTACACGTAAATCTCAATCG
* * *
62093549 AGGCCTGTGTCCCAGACACGGTCTTA
1 ATGCCTATGTCCCAGACATGGTCTTA
62093575 TACGATGTCT
Statistics
Matches: 87, Mismatches: 19, Indels: 10
0.75 0.16 0.09
Matches are distributed among these distances:
41 1 0.01
42 28 0.32
43 56 0.64
44 2 0.02
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (43 bp):
ATGCCTATGTCCCAGACATGGTCTTACACGTAAATCTCAATCG
Found at i:62093566 original size:85 final size:85
Alignment explanation
Indices: 62093421--62093579 Score: 196
Period size: 85 Copynumber: 1.9 Consensus size: 85
62093411 ACTAAGTACA
* * * * * *
62093421 ATGCCGATGTCCCAGACGTGGTCTTACATGTAATTCAATATCGATGCCTCTGTCCTAGACAGGGT
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATTCAATATCGAGGCCTCTGTCCCAGACACGGT
62093486 CTTACACGAAATCGAATTCG
66 CTTACACGAAATCGAATTCG
* * *
62093506 ATGCCAATGTTCCAGACATGGTCTTATACGTAAATCTC-A-ATCGAGGCCTGTGTCCCAGACACG
1 ATGCCAATGTCCCAGACATGGTCTTACACGT-AAT-TCAATATCGAGGCCTCTGTCCCAGACACG
*
62093569 GTCTTATACGA
64 GTCTTACACGA
62093580 TGTCTCAGAC
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
85 56 0.90
86 4 0.06
87 2 0.03
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (85 bp):
ATGCCAATGTCCCAGACATGGTCTTACACGTAATTCAATATCGAGGCCTCTGTCCCAGACACGGT
CTTACACGAAATCGAATTCG
Found at i:62103622 original size:20 final size:21
Alignment explanation
Indices: 62103597--62103635 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
62103587 TCCTTAAAAC
*
62103597 AGGGC-ACACGCCCGTGTGGA
1 AGGGCAACACGCCCATGTGGA
62103617 AGGGCAACACGCCCATGTG
1 AGGGCAACACGCCCATGTG
62103636 ACCAACTCGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.23, C:0.31, G:0.36, T:0.10
Consensus pattern (21 bp):
AGGGCAACACGCCCATGTGGA
Found at i:62104971 original size:46 final size:47
Alignment explanation
Indices: 62104888--62104998 Score: 109
Period size: 46 Copynumber: 2.4 Consensus size: 47
62104878 CTCGTAGCCG
* * * * * *
62104888 ATGCATGTCCCAAACATGTCTTACATTGGCTTACGTCTCGAGGTC-A
1 ATGCATGTCCCAGACATGACGTACACTAGCTTACGTCTCAAGGTCGA
* *
62104934 ATGCATGTCCCAGACATGACGTACACTAGCATT-CGTCTTAATGTCGA
1 ATGCATGTCCCAGACATGACGTACACTAGC-TTACGTCTCAAGGTCGA
* *
62104981 TTCCATGTCCCAGACATG
1 ATGCATGTCCCAGACATG
62104999 GTCTTACACT
Statistics
Matches: 53, Mismatches: 10, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
46 34 0.64
47 19 0.36
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.29
Consensus pattern (47 bp):
ATGCATGTCCCAGACATGACGTACACTAGCTTACGTCTCAAGGTCGA
Found at i:62113957 original size:46 final size:48
Alignment explanation
Indices: 62113772--62114042 Score: 265
Period size: 46 Copynumber: 5.7 Consensus size: 48
62113762 GTAAGTTGTT
*
62113772 GATGCCATATCCCAGACATGGTCTTACACTGGC-TATCATCATCGAGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTTA-CATC-TCGAGGCC
* * * * *
62113821 AATGCCATGTCCCAGACATGGTCTTACACTAGCTCTTGCATATCCG-TGCC
1 GATGCCATGTCCCAGACATGGTCTTACACT-G-GCTTACATCT-CGAGGCC
* *
62113871 GATGCCATGTCCCAAACATGGTCTTACACTGAC--ACATCTCGTA-GCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTTACATCTCG-AGGCC
* *
62113917 GATG-CATGTCCCAAACAT-GTCTTACACTGGCTTACGTCTCGAGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTTACATCTCGAGGCC
* * * * * *
62113963 GATG-CATGTCCCAGACAT-GTCTTACACTAGCACT-CGTCTCAATGTC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGC-TTACATCTCGAGGCC
62114009 GATGCCATGTCCCAGACATGGTCTTACACTGGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCT
62114043 CACACCAATG
Statistics
Matches: 189, Mismatches: 21, Indels: 26
0.80 0.09 0.11
Matches are distributed among these distances:
44 12 0.06
45 17 0.09
46 63 0.33
47 15 0.08
48 13 0.07
49 29 0.15
50 33 0.17
51 6 0.03
52 1 0.01
ACGTcount: A:0.23, C:0.31, G:0.20, T:0.26
Consensus pattern (48 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGGCTTACATCTCGAGGCC
Found at i:62116687 original size:29 final size:29
Alignment explanation
Indices: 62116654--62116742 Score: 124
Period size: 29 Copynumber: 3.1 Consensus size: 29
62116644 TAGGTTGTAA
* * * *
62116654 GCGACACACGGTTGTGTGATAGATCGTGT
1 GCGACACACAGTCGTGTGACAGACCGTGT
* *
62116683 GCGACACACAGTCATGTGACAGGCCGTGT
1 GCGACACACAGTCGTGTGACAGACCGTGT
62116712 GCGACACACAGTCGTGTGACAGACCGTGT
1 GCGACACACAGTCGTGTGACAGACCGTGT
62116741 GC
1 GC
62116743 TGGACAGTGT
Statistics
Matches: 52, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 52 1.00
ACGTcount: A:0.22, C:0.25, G:0.33, T:0.20
Consensus pattern (29 bp):
GCGACACACAGTCGTGTGACAGACCGTGT
Found at i:62127553 original size:3 final size:3
Alignment explanation
Indices: 62127547--62127575 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
62127537 GAAAGTAAAA
62127547 AAG AAG AAG AAG AAG AAG AAG AAG AAG AA
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AA
62127576 TGAGTGATCT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:62128086 original size:22 final size:24
Alignment explanation
Indices: 62128060--62128105 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
62128050 TTTTTTATAA
* *
62128060 AATAAATAG-ATA-GAGAGTAAAG
1 AATAAAAAGAATAGGAGAGCAAAG
62128082 AATAAAAAGAATAGGAGAGCAAAG
1 AATAAAAAGAATAGGAGAGCAAAG
62128106 TGAGTGTATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 8 0.40
23 3 0.15
24 9 0.45
ACGTcount: A:0.61, C:0.02, G:0.24, T:0.13
Consensus pattern (24 bp):
AATAAAAAGAATAGGAGAGCAAAG
Found at i:62136514 original size:47 final size:47
Alignment explanation
Indices: 62136460--62136653 Score: 298
Period size: 47 Copynumber: 4.1 Consensus size: 47
62136450 TTAGGATTTT
** * *
62136460 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
62136507 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
62136554 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * *
62136601 ATGTGGTGAATGTGAACATGCATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
62136648 ATGTGA
1 ATGTGA
62136654 AATATGTATG
Statistics
Matches: 134, Mismatches: 13, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 134 1.00
ACGTcount: A:0.32, C:0.11, G:0.30, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:62136560 original size:22 final size:22
Alignment explanation
Indices: 62136489--62136560 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
62136479 GTATATATGA
62136489 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
* * *
62136511 GATGAATG-TGAACAT-GCATATATGT
1 GAT-AAGGCCG-A-ATGGC-CA-ATGT
62136536 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
62136558 GAT
1 GAT
62136561 GAATGTGAGC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 11 0.30
23 9 0.24
24 9 0.24
25 8 0.22
ACGTcount: A:0.33, C:0.14, G:0.29, T:0.24
Consensus pattern (22 bp):
GATAAGGCCGAATGGCCAATGT
Found at i:62136609 original size:25 final size:25
Alignment explanation
Indices: 62136534--62136609 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 25
62136524 ATGCATATAT
62136534 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
* * * *
62136559 ATGA-ATGTG-AGCAT-G-CATATGT-
1 GTGATAAG-GCCGAATGGCCA-ATGTG
62136581 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
62136606 GTGA
1 GTGA
62136610 ATGTGAACAT
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 6 0.17
23 10 0.28
24 10 0.28
25 10 0.28
ACGTcount: A:0.29, C:0.13, G:0.34, T:0.24
Consensus pattern (25 bp):
GTGATAAGGCCGAATGGCCAATGTG
Found at i:62136686 original size:48 final size:48
Alignment explanation
Indices: 62136623--62136757 Score: 261
Period size: 48 Copynumber: 2.8 Consensus size: 48
62136613 TGAACATGCA
62136623 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
62136671 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
*
62136719 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
62136758 GGCGATGTGC
Statistics
Matches: 86, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
48 86 1.00
ACGTcount: A:0.35, C:0.07, G:0.27, T:0.31
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
Found at i:62137086 original size:37 final size:37
Alignment explanation
Indices: 62136904--62137085 Score: 310
Period size: 37 Copynumber: 4.9 Consensus size: 37
62136894 GGAAATATAT
*
62136904 TCCGGGTAAGACCCGATGACTACGTGTGGTGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
62136941 TCCGGGTAAGACCCGATGACTACGTGTGGTGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
62136978 TCCGGGTAAGACCCGATGACTACGTGTAGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
62137015 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
62137052 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
62137086 TCGTCTGAGC
Statistics
Matches: 139, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 139 1.00
ACGTcount: A:0.23, C:0.19, G:0.31, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:62141388 original size:3 final size:3
Alignment explanation
Indices: 62141380--62141404 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
62141370 CAAGCATATT
62141380 TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA T
62141405 TTAATCATCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:62143450 original size:20 final size:20
Alignment explanation
Indices: 62143425--62143464 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
62143415 AATGACAAGA
*
62143425 TTTATCTTACCGCAAACATC
1 TTTATCTTACCGAAAACATC
*
62143445 TTTATCTTATCGAAAACATC
1 TTTATCTTACCGAAAACATC
62143465 CACCATGTGT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.33, C:0.25, G:0.05, T:0.38
Consensus pattern (20 bp):
TTTATCTTACCGAAAACATC
Found at i:62148219 original size:43 final size:43
Alignment explanation
Indices: 62148171--62148337 Score: 155
Period size: 43 Copynumber: 3.9 Consensus size: 43
62148161 ATCGAGATGT
*
62148171 GATTACATGTAAGACCATGTCTAGGACATTGGCATTGTATTGA
1 GATTACATGTAAGACCATGTCTGGGACATTGGCATTGTATTGA
* * *
62148214 GATTACGTGTAAGACCATGTCTGGGACATTGGCGTTGTTAATCGA
1 GATTACATGTAAGACCATGTCTGGGACATTGGCATTG-T-ATTGA
* * * *
62148259 G-TT-CGTGTAAGACGC-TGTCTGGGACAGTGGCATCG-ATATGT
1 GATTACATGTAAGAC-CATGTCTGGGACATTGGCATTGTAT-TGA
* * * *
62148300 GATAACATGTAAGACCATATATGGGATA-TGGCATTGTA
1 GATTACATGTAAGACCATGTCTGGGACATTGGCATTGTA
62148338 CGAGTTTATG
Statistics
Matches: 101, Mismatches: 15, Indels: 16
0.77 0.11 0.12
Matches are distributed among these distances:
40 2 0.02
41 2 0.02
42 9 0.09
43 79 0.78
44 4 0.04
45 5 0.05
ACGTcount: A:0.28, C:0.14, G:0.28, T:0.31
Consensus pattern (43 bp):
GATTACATGTAAGACCATGTCTGGGACATTGGCATTGTATTGA
Found at i:62160508 original size:43 final size:43
Alignment explanation
Indices: 62160403--62160510 Score: 155
Period size: 43 Copynumber: 2.5 Consensus size: 43
62160393 TAGCTCAGCT
* * *
62160403 ATGGTCTTATACGA-AATCAAATAACGATGCCAATGTCCCAGAT
1 ATGGTCTTACAC-ATAATCACATAACGATGCCAATGTCCCAGAC
* *
62160446 ATGGCCTTACACATAATCACATAATGATGCCAATGTCCCAGAC
1 ATGGTCTTACACATAATCACATAACGATGCCAATGTCCCAGAC
62160489 ATGGTCTTACACATAATCACAT
1 ATGGTCTTACACATAATCACAT
62160511 CTCGTTAATC
Statistics
Matches: 58, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
42 1 0.02
43 57 0.98
ACGTcount: A:0.36, C:0.24, G:0.14, T:0.26
Consensus pattern (43 bp):
ATGGTCTTACACATAATCACATAACGATGCCAATGTCCCAGAC
Found at i:62162228 original size:48 final size:47
Alignment explanation
Indices: 62162166--62162544 Score: 326
Period size: 48 Copynumber: 7.9 Consensus size: 47
62162156 GACATTTGGG
* * * *
62162166 TGATATGTGTGCCAGTGTAAGACCACGTCTGGGACATGACATCAGCTA
1 TGATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGC-A
* * * **
62162214 CGATATGAGAGCCAGTGTAAGACCATGTTTGGAACATGGCATTGGCA
1 TGATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCA
* * * * *
62162261 TTGTTTTGAGAGCCAGTGTAAGACTATGTCTGGGATATGGCATCGACCA
1 -TGATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATC-AGCA
* * * * *
62162310 CGATATGAGAGCCAGTGTAAGACCATGTTTCGAACATGGCATCGGCGA
1 TGATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGC-A
* * * * *
62162358 TGTTGTGAGAGCAAATGTAAGACCATGTCTGGGACATGGCATCAACA
1 TGATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCA
* * * * *
62162405 TTGATATGTGCGCTAGTGTAAGACCATGTCTAGGACATGGCATCGGCA
1 -TGATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCA
* * * * * *
62162453 TTGAGACGAGAGCTAGTGTAAGACCATGTTTGAGACATGGCATCAGCC
1 -TGATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCA
* ** * * *
62162501 TCGACATTTGAGCCAGTGTAAGACTATGTTTGGAACATGGCATC
1 T-GATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATC
62162545 GGCAACTCAC
Statistics
Matches: 261, Mismatches: 65, Indels: 10
0.78 0.19 0.03
Matches are distributed among these distances:
47 4 0.02
48 255 0.98
49 2 0.01
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.25
Consensus pattern (47 bp):
TGATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCA
Found at i:62162345 original size:96 final size:96
Alignment explanation
Indices: 62162176--62162548 Score: 430
Period size: 96 Copynumber: 3.9 Consensus size: 96
62162166 TGATATGTGT
* * *
62162176 GCCAGTGTAAGACCACGTCTGGGACATGACATCAGCTACGATATGAGAGCCAGTGTAAGACCATG
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCCACGATATGAGAGCCAGTGTAAGACCATG
* *
62162241 TTTGGAACATGGCATTGGCATTGTTTTGAGA
66 TTTGGAACATGGCATCGGCATTGTTATGAGA
* *
62162272 GCCAGTGTAAGACTATGTCTGGGATATGGCATC-GACCACGATATGAGAGCCAGTGTAAGACCAT
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCAG-CCACGATATGAGAGCCAGTGTAAGACCAT
* *
62162336 GTTTCGAACATGGCATCGGCGA-TGTTGTGAGA
65 GTTTGGAACATGGCATCGGC-ATTGTTATGAGA
* * * * * * *
62162368 GCAAATGTAAGACCATGTCTGGGACATGGCATCA-ACATTGATATGTGCGCTAGTGTAAGACCAT
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCCA-CGATATGAGAGCCAGTGTAAGACCAT
* ** *
62162432 GTCTAGG-ACATGGCATCGGCATTGAGACGAGA
65 GT-TTGGAACATGGCATCGGCATTGTTATGAGA
* * * * * ** *
62162464 GCTAGTGTAAGACCATGTTTGAGACATGGCATCAGCCTCGACATTTGAGCCAGTGTAAGACTATG
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCCACGATATGAGAGCCAGTGTAAGACCATG
62162529 TTTGGAACATGGCATCGGCA
66 TTTGGAACATGGCATCGGCA
62162549 ACTCACCCTC
Statistics
Matches: 233, Mismatches: 36, Indels: 16
0.82 0.13 0.06
Matches are distributed among these distances:
95 7 0.03
96 222 0.95
97 4 0.02
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.24
Consensus pattern (96 bp):
GCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCCACGATATGAGAGCCAGTGTAAGACCATG
TTTGGAACATGGCATCGGCATTGTTATGAGA
Found at i:62162521 original size:144 final size:143
Alignment explanation
Indices: 62162176--62162544 Score: 377
Period size: 144 Copynumber: 2.6 Consensus size: 143
62162166 TGATATGTGT
* * * * **
62162176 GCCAGTGTAAGACCACGTCTGGGACATGACATCAGCTACGATATGAGAGCCAGTGTAAGACCATG
1 GCCAGTGTAAGACCATGTTTGAGACATGGCATCAGCT-CGATATTTGAGCCAGTGTAAGACCATG
*** * * * * *
62162241 TTTGGAACATGGCATTGGCATTGTTTTGAGAGCCAGTGTAAGACTATGTCTGGGATATGGCATCG
65 TTTGGAACATGGCATCAACATTGATATGAGAGCCAGTGTAAGACCATGTCTAGGACATGGCATCG
* *
62162306 ACCACGATATGAGA
130 ACCACGAGACGAGA
* * * *
62162320 GCCAGTGTAAGACCATGTTTCGA-ACATGGCATC-G-GCGATGTTGTGAGAGCAAATGTAAGACC
1 GCCAGTGTAAGACCATGTTT-GAGACATGGCATCAGCTCGATATT-T--GAGCCAGTGTAAGACC
* * * * *
62162382 ATGTCTGGGACATGGCATCAACATTGATATGTGCGCTAGTGTAAGACCATGTCTAGGACATGGCA
62 ATGTTTGGAACATGGCATCAACATTGATATGAGAGCCAGTGTAAGACCATGTCTAGGACATGGCA
* *
62162447 TCG-GCATTGAGACGAGA
127 TCGACCA-CGAGACGAGA
* * *
62162464 GCTAGTGTAAGACCATGTTTGAGACATGGCATCAGCCTCGACATTTGAGCCAGTGTAAGACTATG
1 GCCAGTGTAAGACCATGTTTGAGACATGGCATCAG-CTCGATATTTGAGCCAGTGTAAGACCATG
62162529 TTTGGAACATGGCATC
65 TTTGGAACATGGCATC
62162545 GGCAACTCAC
Statistics
Matches: 180, Mismatches: 36, Indels: 18
0.77 0.15 0.08
Matches are distributed among these distances:
141 5 0.03
143 5 0.03
144 162 0.90
145 2 0.01
146 1 0.01
147 5 0.03
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (143 bp):
GCCAGTGTAAGACCATGTTTGAGACATGGCATCAGCTCGATATTTGAGCCAGTGTAAGACCATGT
TTGGAACATGGCATCAACATTGATATGAGAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGA
CCACGAGACGAGA
Found at i:62166619 original size:24 final size:26
Alignment explanation
Indices: 62166563--62166624 Score: 69
Period size: 25 Copynumber: 2.5 Consensus size: 26
62166553 AAATAGCTTC
* *
62166563 TAAAAGAAACTC-AAGAGTAATTCCT
1 TAAAAAAAACTCAAAGAGTAATTCAT
*
62166588 TAAGAAAAACTCAAAGAG-AATT-AT
1 TAAAAAAAACTCAAAGAGTAATTCAT
62166612 TAAAAAAAA-TCAA
1 TAAAAAAAACTCAA
62166625 TTGTATGTGT
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
23 4 0.12
24 9 0.28
25 14 0.44
26 5 0.16
ACGTcount: A:0.58, C:0.11, G:0.10, T:0.21
Consensus pattern (26 bp):
TAAAAAAAACTCAAAGAGTAATTCAT
Found at i:62168713 original size:46 final size:46
Alignment explanation
Indices: 62168543--62168713 Score: 192
Period size: 46 Copynumber: 3.7 Consensus size: 46
62168533 AACCCGCCCC
* * *
62168543 TAAGTG-ACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
* *
62168588 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
62168636 TCA-CGAACTC-GACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
62168680 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
62168714 TGCTCAACCA
Statistics
Matches: 104, Mismatches: 11, Indels: 21
0.76 0.08 0.15
Matches are distributed among these distances:
41 2 0.02
42 4 0.04
43 1 0.01
44 2 0.02
45 12 0.12
46 69 0.66
47 6 0.06
48 2 0.02
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:62173926 original size:85 final size:85
Alignment explanation
Indices: 62173783--62173959 Score: 336
Period size: 85 Copynumber: 2.1 Consensus size: 85
62173773 GGCCGGCCAT
62173783 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
*
62173848 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAAAAAAATAAA
62173868 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
62173933 GTAAGGATTAAAAAAATAAA
66 GTAAGGATTAAAAAAATAAA
*
62173953 GGGCATG
1 GAGCATG
62173960 AGCAATAAAA
Statistics
Matches: 90, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
85 90 1.00
ACGTcount: A:0.38, C:0.08, G:0.27, T:0.26
Consensus pattern (85 bp):
GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
GTAAGGATTAAAAAAATAAA
Found at i:62173952 original size:41 final size:41
Alignment explanation
Indices: 62173822--62173952 Score: 92
Period size: 41 Copynumber: 3.1 Consensus size: 41
62173812 AAAACATGTC
*
62173822 ATAAACATGTTGGGGTAGTGCATTATGTAAGGATTAATAAA
1 ATAAACATGTTGGGGTAGTGCATTATGTAAGGATTAAAAAA
* * ** * *
62173863 ATAAAGA-GCAT-GGGT-G-GACAAGATGTTATGG-CTAAAAACA
1 ATAAACATG-TTGGGGTAGTG-CATTATG-TAAGGATTAAAAA-A
62173903 TGTCATAAACATGTTGGGGTAGTGCATTATGTAAGGATTAAAAAA
1 ----ATAAACATGTTGGGGTAGTGCATTATGTAAGGATTAAAAAA
62173948 ATAAA
1 ATAAA
62173953 GGGCATGAGC
Statistics
Matches: 64, Mismatches: 13, Indels: 26
0.62 0.13 0.25
Matches are distributed among these distances:
38 1 0.02
39 11 0.17
40 10 0.16
41 12 0.19
44 7 0.11
45 10 0.16
46 12 0.19
47 1 0.02
ACGTcount: A:0.41, C:0.07, G:0.24, T:0.27
Consensus pattern (41 bp):
ATAAACATGTTGGGGTAGTGCATTATGTAAGGATTAAAAAA
Found at i:62176063 original size:49 final size:47
Alignment explanation
Indices: 62175984--62176628 Score: 1067
Period size: 47 Copynumber: 13.6 Consensus size: 47
62175974 TATTTGAATA
62175984 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
62176031 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
62176080 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
62176127 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
62176176 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
62176223 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
62176272 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
62176321 AATGTGAAAGTGTACATATGTGATAAGGCCGAATGGCC-ATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
62176367 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
62176414 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
62176461 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
62176508 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTAATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * *
62176555 AATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
62176602 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
62176629 TCCCGAAGGG
Statistics
Matches: 565, Mismatches: 26, Indels: 14
0.93 0.04 0.02
Matches are distributed among these distances:
46 44 0.08
47 335 0.59
49 186 0.33
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:62176092 original size:96 final size:96
Alignment explanation
Indices: 62175984--62176628 Score: 1074
Period size: 96 Copynumber: 6.8 Consensus size: 96
62175974 TATTTGAATA
62175984 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
62176049 TATGTGATAAGGCCTAATGGCCGATGTGATG
66 TATGTGATAAGGCCTAATGGCCGATGTGATG
* *
62176080 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
62176145 TATGTGATAAGGCCTAATGGCCGATGTGATG
66 TATGTGATAAGGCCTAATGGCCGATGTGATG
* *
62176176 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
62176241 TATGTGATAAGGCCTAATGGCCGATGTGATG
66 TATGTGATAAGGCCTAATGGCCGATGTGATG
62176272 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
* *
62176335 CATATGTGATAAGGCCGAATGGCC-ATGTGATG
64 TATATGTGATAAGGCCTAATGGCCGATGTGATG
62176367 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
*
62176430 TATGTGATAAGGCCTAATAGCCGATGTGATG
66 TATGTGATAAGGCCTAATGGCCGATGTGATG
62176461 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
*
62176524 TATGTGATAAGGCCTAATGGCCGATGTAATG
66 TATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * * *
62176555 AATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATA-A
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
62176619 -ATGTGATAAG
66 TATGTGATAAG
62176629 TCCCGAAGGG
Statistics
Matches: 526, Mismatches: 18, Indels: 12
0.95 0.03 0.02
Matches are distributed among these distances:
93 70 0.13
94 162 0.31
95 21 0.04
96 228 0.43
98 45 0.09
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (96 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
TATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:62178288 original size:93 final size:93
Alignment explanation
Indices: 62178181--62178351 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
62178171 GCCCCTAAGT
* *
62178181 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
62178246 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
*
62178274 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
62178339 CGAGTTCGGATGC
66 CGAGTTCGGATGC
62178352 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:62178348 original size:46 final size:46
Alignment explanation
Indices: 62178176--62178348 Score: 210
Period size: 46 Copynumber: 3.7 Consensus size: 46
62178166 AACCCGCCCC
* * *
62178176 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
* *
62178222 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
62178270 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
62178315 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
62178349 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 61 0.57
47 29 0.27
48 2 0.02
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:62183831 original size:46 final size:43
Alignment explanation
Indices: 62183688--62183823 Score: 123
Period size: 46 Copynumber: 3.0 Consensus size: 43
62183678 ACCCCCCCTA
*
62183688 AGTGAAATCGGACTCAACTCAACGAGTTCGGATGCCTAGTTA-CATTT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A---ACCA-TT
* * * *
62183735 CA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATA
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CAACCATT
62183781 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CAACCAT
62183824 CCTAGTGACA
Statistics
Matches: 74, Mismatches: 9, Indels: 14
0.76 0.09 0.14
Matches are distributed among these distances:
44 9 0.12
45 1 0.01
46 29 0.39
47 29 0.39
48 1 0.01
49 4 0.05
50 1 0.01
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (43 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCAACCATT
Found at i:62187447 original size:38 final size:38
Alignment explanation
Indices: 62187405--62187486 Score: 146
Period size: 38 Copynumber: 2.2 Consensus size: 38
62187395 AACGGGTCAC
*
62187405 ATTCAATAACATTATTTCTTTTCTCATACAAGTCTTTG
1 ATTCAATAACATTAGTTCTTTTCTCATACAAGTCTTTG
*
62187443 ATTCAATAACATTGGTTCTTTTCTCATACAAGTCTTTG
1 ATTCAATAACATTAGTTCTTTTCTCATACAAGTCTTTG
62187481 ATTCAA
1 ATTCAA
62187487 GATTCCTATC
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 42 1.00
ACGTcount: A:0.29, C:0.18, G:0.07, T:0.45
Consensus pattern (38 bp):
ATTCAATAACATTAGTTCTTTTCTCATACAAGTCTTTG
Found at i:62198037 original size:20 final size:21
Alignment explanation
Indices: 62198012--62198061 Score: 59
Period size: 20 Copynumber: 2.4 Consensus size: 21
62198002 TTATTGTTTT
62198012 TAAAATTTTCT-AAGCAATAA
1 TAAAATTTTCTAAAGCAATAA
* *
62198032 TAAAA-TCTCTAAAGCAATAG
1 TAAAATTTTCTAAAGCAATAA
62198052 TAAAAATTTT
1 T-AAAATTTT
62198062 AAAAGATACG
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
19 4 0.17
20 14 0.58
21 4 0.17
22 2 0.08
ACGTcount: A:0.50, C:0.10, G:0.06, T:0.34
Consensus pattern (21 bp):
TAAAATTTTCTAAAGCAATAA
Found at i:62198945 original size:38 final size:40
Alignment explanation
Indices: 62198895--62198969 Score: 109
Period size: 38 Copynumber: 1.9 Consensus size: 40
62198885 TATTTCTGTT
*
62198895 AGATATTTTGTTATACATTAGAGA-TTTGGTATCATTTAC
1 AGATATTTTGTTATACATTAGAAATTTTGGTATCATTTAC
**
62198934 AGAT-TTTTGTTATTTATTAGAAATTTTGGTATCATT
1 AGATATTTTGTTATACATTAGAAATTTTGGTATCATT
62198970 AGATATTTTG
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
38 16 0.50
39 16 0.50
ACGTcount: A:0.29, C:0.05, G:0.15, T:0.51
Consensus pattern (40 bp):
AGATATTTTGTTATACATTAGAAATTTTGGTATCATTTAC
Found at i:62198972 original size:18 final size:18
Alignment explanation
Indices: 62198893--62198983 Score: 67
Period size: 18 Copynumber: 4.9 Consensus size: 18
62198883 GGTATTTCTG
* *
62198893 TTAGATATTTTGTTATACA
1 TTAGAAATTTTGGTAT-CA
*
62198912 TTAGAGA-TTTGGTATCA
1 TTAGAAATTTTGGTATCA
* * * *
62198929 TTTACAGATTTTTGTTATTTA
1 -TTAGA-AATTTTGGTA-TCA
62198950 TTAGAAATTTTGGTATCA
1 TTAGAAATTTTGGTATCA
*
62198968 TTAGATATTTTGGTAT
1 TTAGAAATTTTGGTAT
62198984 TTGGTTTGAG
Statistics
Matches: 56, Mismatches: 12, Indels: 9
0.73 0.16 0.12
Matches are distributed among these distances:
17 2 0.04
18 28 0.50
19 14 0.25
20 10 0.18
21 2 0.04
ACGTcount: A:0.29, C:0.04, G:0.15, T:0.52
Consensus pattern (18 bp):
TTAGAAATTTTGGTATCA
Found at i:62198978 original size:38 final size:38
Alignment explanation
Indices: 62198893--62198978 Score: 104
Period size: 38 Copynumber: 2.3 Consensus size: 38
62198883 GGTATTTCTG
*
62198893 TTAGATA-TTTTGTTATACATTAGAGATTTGGTATCAT
1 TTAGATATTTTTGTTATACATTAGAAATTTGGTATCAT
* * **
62198930 TTACAGATTTTTGTTATTTATTAGAAATTTTGGTATCA-
1 TTAGATATTTTTGTTATACATTAGAAA-TTTGGTATCAT
62198968 TTAGATATTTT
1 TTAGATATTTT
62198979 GGTATTTGGT
Statistics
Matches: 40, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
37 5 0.12
38 25 0.62
39 10 0.25
ACGTcount: A:0.29, C:0.05, G:0.14, T:0.52
Consensus pattern (38 bp):
TTAGATATTTTTGTTATACATTAGAAATTTGGTATCAT
Found at i:62203232 original size:26 final size:26
Alignment explanation
Indices: 62203196--62203248 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
62203186 GAATTCCAAC
*
62203196 ACTTTAATTTGGTAGATACTCTACGT
1 ACTTTAATTTGGCAGATACTCTACGT
*
62203222 ACTTTAATTTGGCAGATACTTTACGT
1 ACTTTAATTTGGCAGATACTCTACGT
62203248 A
1 A
62203249 TTGGGATGTT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.15, G:0.15, T:0.42
Consensus pattern (26 bp):
ACTTTAATTTGGCAGATACTCTACGT
Found at i:62206526 original size:20 final size:20
Alignment explanation
Indices: 62206503--62206564 Score: 51
Period size: 20 Copynumber: 3.2 Consensus size: 20
62206493 TCTCACGAAC
62206503 TCGGACTCAACTCAACGAGT
1 TCGGACTCAACTCAACGAGT
** **
62206523 TCGGA-TGC--CT-AGTGAAC
1 TCGGACT-CAACTCAACGAGT
62206540 TCGGACTCAACTCAACGAGT
1 TCGGACTCAACTCAACGAGT
62206560 TCGGA
1 TCGGA
62206565 TGCCTAGTTA
Statistics
Matches: 29, Mismatches: 8, Indels: 10
0.62 0.17 0.21
Matches are distributed among these distances:
17 9 0.31
18 3 0.10
19 3 0.10
20 14 0.48
ACGTcount: A:0.27, C:0.27, G:0.24, T:0.21
Consensus pattern (20 bp):
TCGGACTCAACTCAACGAGT
Found at i:62206549 original size:37 final size:37
Alignment explanation
Indices: 62206499--62206572 Score: 148
Period size: 37 Copynumber: 2.0 Consensus size: 37
62206489 TACATCTCAC
62206499 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGT
62206536 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGT
62206573 TACATCTCAC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.27, C:0.27, G:0.24, T:0.22
Consensus pattern (37 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGT
Found at i:62206676 original size:46 final size:44
Alignment explanation
Indices: 62206531--62206676 Score: 127
Period size: 47 Copynumber: 3.2 Consensus size: 44
62206521 GTTCGGATGC
62206531 CTAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTA-CAT
1 CTAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A---ACCAT
* * * *
62206578 CTCA-CGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCATCCAT
1 CT-AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CAACCAT
* *
62206625 -AAGTGAACTTGGACTCAACTCAACGAGTTCGGATGCTCAACCAT
1 CTAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CAACCAT
62206669 CCTAGTGA
1 -CTAGTGA
62206677 CATGTCACTT
Statistics
Matches: 79, Mismatches: 12, Indels: 17
0.73 0.11 0.16
Matches are distributed among these distances:
44 9 0.11
45 1 0.01
46 31 0.39
47 32 0.41
48 1 0.01
49 4 0.05
50 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.23
Consensus pattern (44 bp):
CTAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCAACCAT
Found at i:62210915 original size:29 final size:29
Alignment explanation
Indices: 62210873--62210945 Score: 87
Period size: 29 Copynumber: 2.6 Consensus size: 29
62210863 GTTGTGAGAT
* *
62210873 TGGCAC-AGGTGTGCGAACTTGAAA-TGCA
1 TGGCACTAAGTGTGCG-ACTTGAAAGTACA
* *
62210901 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGACTTGAAAGTACA
62210930 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
62210946 CGGTTGATTA
Statistics
Matches: 39, Mismatches: 4, Indels: 3
0.85 0.09 0.07
Matches are distributed among these distances:
28 12 0.31
29 27 0.69
ACGTcount: A:0.27, C:0.16, G:0.32, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGACTTGAAAGTACA
Found at i:62226218 original size:39 final size:40
Alignment explanation
Indices: 62226084--62226347 Score: 455
Period size: 40 Copynumber: 6.7 Consensus size: 40
62226074 GAGCATTGGA
62226084 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
62226124 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* *
62226164 ATATATCCGGGCTATGACCCGAAGGCAATTATGCGAG-TA
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
62226203 ATATATCCGGGCTATGACCCGAAGGCAATTATGCGAG-TG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
62226242 ATATATCCGGGCTAA-ACCCGAAGGCAATTATGCGAGATG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
62226281 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
62226321 ATATGTCCGGG-TAAGACCCGAAGGCAA
1 ATATATCCGGGCTAAGACCCGAAGGCAA
62226348 ATGTGTTTGC
Statistics
Matches: 216, Mismatches: 6, Indels: 5
0.95 0.03 0.02
Matches are distributed among these distances:
38 21 0.10
39 86 0.40
40 109 0.50
ACGTcount: A:0.31, C:0.20, G:0.27, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
Found at i:62226300 original size:117 final size:120
Alignment explanation
Indices: 62226083--62226347 Score: 457
Period size: 117 Copynumber: 2.2 Consensus size: 120
62226073 TGAGCATTGG
62226083 AATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGATATATCCGGGCTAAGACCCGAAG
1 AATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGATATATCCGGGCTAAGACCCGAAG
* *
62226148 GCAATTATGCGAGTTGATATATCCGGGCTATGACCCGAAGGCAATTATGCGAG-T
66 GCAATTATGCGAGATGATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
*
62226202 AATATATCCGGGCTATGACCCGAAGGCAATTATGCGAG-TGATATATCCGGGCTAA-ACCCGAAG
1 AATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGATATATCCGGGCTAAGACCCGAAG
62226265 GCAATTATGCGAGATGATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
66 GCAATTATGCGAGATGATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
* *
62226320 GATATGTCCGGG-TAAGACCCGAAGGCAA
1 AATATATCCGGGCTAAGACCCGAAGGCAA
62226348 ATGTGTTTGC
Statistics
Matches: 139, Mismatches: 6, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
117 74 0.53
118 28 0.20
119 37 0.27
ACGTcount: A:0.31, C:0.20, G:0.27, T:0.22
Consensus pattern (120 bp):
AATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGATATATCCGGGCTAAGACCCGAAG
GCAATTATGCGAGATGATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
Found at i:62234691 original size:40 final size:40
Alignment explanation
Indices: 62234632--62234899 Score: 464
Period size: 40 Copynumber: 6.7 Consensus size: 40
62234622 GAGCATTGGA
* *
62234632 ATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGATG
62234672 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGATG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGATG
* *
62234712 ATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGATA
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGATG
*
62234752 ATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGATG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGATG
*
62234792 ATATATCCGGGCTAAAACCCGAAGGCAATTATGCGAGATG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGATG
*
62234832 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGATG
*
62234872 ATATGTCCGGGCTAAGACCCGAAGGCAA
1 ATATATCCGGGCTAAGACCCGAAGGCAA
62234900 ATGTGTTTGC
Statistics
Matches: 218, Mismatches: 10, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 218 1.00
ACGTcount: A:0.31, C:0.21, G:0.27, T:0.21
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGATG
Found at i:62238221 original size:46 final size:45
Alignment explanation
Indices: 62238154--62238328 Score: 185
Period size: 46 Copynumber: 3.8 Consensus size: 45
62238144 TGTAACCCGC
**
62238154 CCATAATCGAACTCGGACTCAACTCAACGACCTCGGGCGTTCGCAT
1 CCATAAT-GAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
*
62238200 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAA-TGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCAT
* * * * *
62238250 --ATCACGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCAT
1 CCATAATGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
62238293 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAA-TGAACTCGGACTCAACTCAACGAGTTCGG
62238329 ATGCTCAACC
Statistics
Matches: 107, Mismatches: 12, Indels: 20
0.77 0.09 0.14
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 1 0.01
45 3 0.03
46 59 0.55
47 28 0.26
48 4 0.04
49 1 0.01
50 3 0.03
51 3 0.03
ACGTcount: A:0.30, C:0.30, G:0.19, T:0.21
Consensus pattern (45 bp):
CCATAATGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
Found at i:62238274 original size:93 final size:93
Alignment explanation
Indices: 62238161--62238332 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
62238151 CGCCCATAAT
* * *
62238161 CGAACTCGGACTCAACTCAACGACCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGACCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
62238226 ACGAGTTCGGATGCCTAGTTACATATCA
66 ACGAGTTCGGATGCCTAGTTACATATCA
**
62238254 CGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGACCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
62238319 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
62238333 TCAACCATCC
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGACCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATATCA
Found at i:62238348 original size:46 final size:46
Alignment explanation
Indices: 62238203--62238341 Score: 126
Period size: 47 Copynumber: 3.0 Consensus size: 46
62238193 TTCGCATCCA
*
62238203 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CTAGTTA-CATA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACCATC
* * * * * *
62238251 TCA-CGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCA--
1 TAAGTGAACTCGGACTCAACTCAACGAGTTC-G-GATGCTCAACCATC
62238296 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATC
62238342 CTAGTGACAT
Statistics
Matches: 73, Mismatches: 11, Indels: 16
0.73 0.11 0.16
Matches are distributed among these distances:
44 8 0.11
45 3 0.04
46 26 0.36
47 28 0.38
48 3 0.04
49 4 0.05
50 1 0.01
ACGTcount: A:0.31, C:0.28, G:0.19, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATC
Found at i:62241004 original size:47 final size:47
Alignment explanation
Indices: 62240838--62240984 Score: 258
Period size: 47 Copynumber: 3.1 Consensus size: 47
62240828 GATTTTATGA
62240838 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
* *
62240885 GATGAATGTGAACATACATATATGTGATAAGGCCGAATGGCTAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
**
62240932 GATGAATGTGAACATGCATATATGTGATAAGGTAGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
62240979 GATGAA
1 GATGAA
62240985 CGTGGAAGTG
Statistics
Matches: 94, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 94 1.00
ACGTcount: A:0.36, C:0.10, G:0.27, T:0.27
Consensus pattern (47 bp):
GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
Found at i:62241063 original size:46 final size:46
Alignment explanation
Indices: 62241008--62241180 Score: 265
Period size: 46 Copynumber: 3.8 Consensus size: 46
62240998 ATATGTGGCG
* * * *
62241008 AAGCTGAATGGCTAATGCGGAATGTGTATGAGAGGGATATGAGGTA
1 AAGCCGAATGGCTAATGCGAAACGTGTATGAGATGGATATGAGGTA
62241054 AAGCCGAATGGCTAATGCGAAACGTGTATGAGATGGATATGAGGTA
1 AAGCCGAATGGCTAATGCGAAACGTGTATGAGATGGATATGAGGTA
*
62241100 AAGTCGAATGGCTAATGCGAAACGTGTATGAGATGGATATGAGGTA
1 AAGCCGAATGGCTAATGCGAAACGTGTATGAGATGGATATGAGGTA
* * **
62241146 AAGCCGAATGGCTAATGTGAGATATGTATGAGATG
1 AAGCCGAATGGCTAATGCGAAACGTGTATGAGATG
62241181 TGTATATATA
Statistics
Matches: 117, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 117 1.00
ACGTcount: A:0.34, C:0.09, G:0.34, T:0.24
Consensus pattern (46 bp):
AAGCCGAATGGCTAATGCGAAACGTGTATGAGATGGATATGAGGTA
Found at i:62242713 original size:40 final size:40
Alignment explanation
Indices: 62242655--62243136 Score: 721
Period size: 40 Copynumber: 12.1 Consensus size: 40
62242645 TGAGAGTTAT
* *
62242655 ATATATCCGGTCTAAGTCCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
* * *
62242695 ATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTACTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
* *
62242735 ATGTATCCGGGCTAAGTCCTGAAGAGCATTCGTGCTGGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
* *
62242775 TTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
* * *
62242815 ATGTATCCGGGCTAAGTCCTGGAGAGCATTCGTGCTGGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
*
62242855 TTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
* *
62242895 TTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
*
62242935 ATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
* *
62242975 TTATATCCGGGCTAAGTCCCGAAGAGCATTCATGCTGGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
* *
62243015 TTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
*
62243055 ATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
* * ** * *
62243095 TTACATCCGGGCTAAGTCTTGAAGGGCATTCGTGCCGGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
62243135 AT
1 AT
62243137 GTGTAATCAG
Statistics
Matches: 403, Mismatches: 39, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 403 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.27
Consensus pattern (40 bp):
ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
Found at i:62242869 original size:120 final size:120
Alignment explanation
Indices: 62242656--62243134 Score: 832
Period size: 120 Copynumber: 4.0 Consensus size: 120
62242646 GAGAGTTATA
*
62242656 TATATCCGGTCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAG
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAG
* * * * *
62242721 CATTCGTACTAGTGATGTATCCGGGCTAAGTCCTGAAGAGCATTCGTGCTGGTGT
66 CATTCGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
* *
62242776 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCTGGAGAG
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAG
62242841 CATTCGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
66 CATTCGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
62242896 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAG
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAG
*
62242961 CATTCGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGAGCATTCATGCTGGTGT
66 CATTCGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
62243016 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAG
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAG
* ** * *
62243081 CATTCGTGCTGGTGTTACATCCGGGCTAAGTCTTGAAGGGCATTCGTGCCGGTG
66 CATTCGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
62243135 ATGTGTAATC
Statistics
Matches: 342, Mismatches: 17, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
120 342 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.27
Consensus pattern (120 bp):
TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAG
CATTCGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
Found at i:62243337 original size:25 final size:25
Alignment explanation
Indices: 62243298--62243352 Score: 85
Period size: 25 Copynumber: 2.2 Consensus size: 25
62243288 TGTGTAATAA
62243298 CGAATGAATATAGGCACTATGTGTG
1 CGAATGAATATAGGCACTATGTGTG
*
62243323 CGAATGAAT-TGAGGCACTGTGTGTG
1 CGAATGAATAT-AGGCACTATGTGTG
62243348 CGAAT
1 CGAAT
62243353 TCTTTAACCG
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
24 1 0.04
25 27 0.96
ACGTcount: A:0.29, C:0.13, G:0.31, T:0.27
Consensus pattern (25 bp):
CGAATGAATATAGGCACTATGTGTG
Found at i:62246861 original size:47 final size:47
Alignment explanation
Indices: 62246695--62246841 Score: 249
Period size: 47 Copynumber: 3.1 Consensus size: 47
62246685 GATTTTATGA
62246695 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
* **
62246742 GATGAATGTGAACATACATATATGTGATAAGGCCGAATGGTTAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
**
62246789 GATGAATGTGAACATGCATATATGTGATAAGGTAGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
62246836 GATGAA
1 GATGAA
62246842 CGTGGAAGTG
Statistics
Matches: 92, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 92 1.00
ACGTcount: A:0.36, C:0.10, G:0.27, T:0.27
Consensus pattern (47 bp):
GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
Found at i:62246871 original size:94 final size:94
Alignment explanation
Indices: 62246695--62246881 Score: 261
Period size: 94 Copynumber: 2.0 Consensus size: 94
62246685 GATTTTATGA
* *
62246695 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATACA
1 GATGAATGTGAACATGCATATATGTGATAAGGCAGAATGGCCAATGTGATGAACGTGAACATACA
* *
62246760 TATATGTGATAAGGCCGAATGGTTAATGT
66 TATATGTGAGAAGGCCGAATGGCTAATGT
* * **
62246789 GATGAATGTGAACATGCATATATGTGATAAGGTAGAATGGCCAATGTGATGAACGTGGAA-GTGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCAGAATGGCCAATGTGATGAACGT-GAACATAC
*
62246853 ATATATGTGGCGAA-GCCGAATGGCTAATG
65 ATATATGT-GAGAAGGCCGAATGGCTAATG
62246882 CGAAATGTGT
Statistics
Matches: 82, Mismatches: 9, Indels: 4
0.86 0.09 0.04
Matches are distributed among these distances:
94 76 0.93
95 6 0.07
ACGTcount: A:0.34, C:0.10, G:0.29, T:0.27
Consensus pattern (94 bp):
GATGAATGTGAACATGCATATATGTGATAAGGCAGAATGGCCAATGTGATGAACGTGAACATACA
TATATGTGAGAAGGCCGAATGGCTAATGT
Found at i:62246917 original size:46 final size:46
Alignment explanation
Indices: 62246865--62247037 Score: 274
Period size: 46 Copynumber: 3.8 Consensus size: 46
62246855 ATATGTGGCG
* * *
62246865 AAGCCGAATGGCTAATGCGAAATGTGTATGAGAGGGATATAAGGTA
1 AAGCCGAATGGCTAATGCGAAACGTGTATGAGATGGATATGAGGTA
62246911 AAGCCGAATGGCTAATGCGAAACGTGTATGAGATGGATATGAGGTA
1 AAGCCGAATGGCTAATGCGAAACGTGTATGAGATGGATATGAGGTA
*
62246957 AAGCCGAATGGCTAATGCGAAACGTGTATGAGATGGATAGGAGGTA
1 AAGCCGAATGGCTAATGCGAAACGTGTATGAGATGGATATGAGGTA
* * **
62247003 AAGCCGAATGGCTAATGTGAGATATGTATGAGATG
1 AAGCCGAATGGCTAATGCGAAACGTGTATGAGATG
62247038 TGTATATATA
Statistics
Matches: 119, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 119 1.00
ACGTcount: A:0.35, C:0.10, G:0.33, T:0.22
Consensus pattern (46 bp):
AAGCCGAATGGCTAATGCGAAACGTGTATGAGATGGATATGAGGTA
Found at i:62255626 original size:16 final size:16
Alignment explanation
Indices: 62255600--62255642 Score: 59
Period size: 16 Copynumber: 2.7 Consensus size: 16
62255590 GTAGATTGGC
*
62255600 AAAAGCTGAAATGCCG
1 AAAAGCCGAAATGCCG
* *
62255616 GAAAGCCGAAATGCTG
1 AAAAGCCGAAATGCCG
62255632 AAAAGCCGAAA
1 AAAAGCCGAAA
62255643 GTTTGGCTAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.47, C:0.19, G:0.26, T:0.09
Consensus pattern (16 bp):
AAAAGCCGAAATGCCG
Found at i:62260577 original size:29 final size:29
Alignment explanation
Indices: 62260534--62260593 Score: 111
Period size: 29 Copynumber: 2.1 Consensus size: 29
62260524 TTTCGAGTTT
62260534 GTGCTTAACCATGTTCAATCTCATTCTAA
1 GTGCTTAACCATGTTCAATCTCATTCTAA
*
62260563 GTGCTTAACCTTGTTCAATCTCATTCTAA
1 GTGCTTAACCATGTTCAATCTCATTCTAA
62260592 GT
1 GT
62260594 CCGAATCTTG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.12, T:0.40
Consensus pattern (29 bp):
GTGCTTAACCATGTTCAATCTCATTCTAA
Found at i:62263033 original size:15 final size:15
Alignment explanation
Indices: 62263012--62263054 Score: 59
Period size: 15 Copynumber: 2.9 Consensus size: 15
62263002 TCATGACAGT
62263012 GAAATCCAAGATAAA
1 GAAATCCAAGATAAA
* * *
62263027 GATATCCAAGGTACA
1 GAAATCCAAGATAAA
62263042 GAAATCCAAGATA
1 GAAATCCAAGATA
62263055 CCATATCATA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.51, C:0.16, G:0.16, T:0.16
Consensus pattern (15 bp):
GAAATCCAAGATAAA
Found at i:62268366 original size:27 final size:26
Alignment explanation
Indices: 62268319--62268369 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
62268309 CGAGGTTGCT
*
62268319 AGATATTGTGACGAAGTCACCAGAAC
1 AGATATTGTGACGAAGCCACCAGAAC
* *
62268345 AGATATATGTGGCGAGGCCACCAGA
1 AGATAT-TGTGACGAAGCCACCAGA
62268370 TTGCAGCGAG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 6 0.29
27 15 0.71
ACGTcount: A:0.35, C:0.20, G:0.27, T:0.18
Consensus pattern (26 bp):
AGATATTGTGACGAAGCCACCAGAAC
Found at i:62292612 original size:6 final size:6
Alignment explanation
Indices: 62292594--62292683 Score: 78
Period size: 6 Copynumber: 14.7 Consensus size: 6
62292584 AAGAAACATT
* *
62292594 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAGA ATTAG- GTGACAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA
* *
62292643 ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAAA ATCAGA ATCA
1 ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA ATCA
62292684 ATACCAGGTA
Statistics
Matches: 68, Mismatches: 8, Indels: 16
0.74 0.09 0.17
Matches are distributed among these distances:
5 4 0.06
6 56 0.82
7 6 0.09
8 2 0.03
ACGTcount: A:0.48, C:0.16, G:0.18, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:62292639 original size:31 final size:31
Alignment explanation
Indices: 62292603--62292713 Score: 143
Period size: 31 Copynumber: 3.5 Consensus size: 31
62292593 TATCAGAACT
* *
62292603 AGAATCAGAATCAGAATCAGAATTAGGTGAC
1 AGAATCAGAATCAGAATCAGAATCAGGTAAC
*
62292634 AGAATCAGAATCAGAATCAGTATCAGGTAAC
1 AGAATCAGAATCAGAATCAGAATCAGGTAAC
* *
62292665 AGAATCAAAATCAGAATCA-ATACCAGGTAAC
1 AGAATCAGAATCAGAATCAGA-ATCAGGTAAC
*
62292696 AGAATCAAAAATCAGAAT
1 AGAATC-AGAATCAGAAT
62292714 GTGAATGCAA
Statistics
Matches: 72, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
31 61 0.85
32 11 0.15
ACGTcount: A:0.50, C:0.15, G:0.17, T:0.18
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCAGAATCAGGTAAC
Found at i:62292889 original size:27 final size:27
Alignment explanation
Indices: 62292827--62292935 Score: 116
Period size: 27 Copynumber: 4.0 Consensus size: 27
62292817 CATATTGCTG
* * *
62292827 CCAG-AACAGATATTGTGACAGAGTCA
1 CCAGAAACAGATATTGTGGCATAGCCA
62292853 CC-GAATACAGATATTTGTGGCATAGCCA
1 CCAGAA-ACAGATA-TTGTGGCATAGCCA
*
62292881 CCAG-AACAGATATTTGTGGCATAGTCA
1 CCAGAAACAGATA-TTGTGGCATAGCCA
* *
62292908 CCAGAAACAGATAATGTGGCAAAGCCA
1 CCAGAAACAGATATTGTGGCATAGCCA
62292935 C
1 C
62292936 TTAACAGAAT
Statistics
Matches: 71, Mismatches: 7, Indels: 9
0.82 0.08 0.10
Matches are distributed among these distances:
25 1 0.01
26 3 0.04
27 44 0.62
28 22 0.31
29 1 0.01
ACGTcount: A:0.37, C:0.21, G:0.22, T:0.20
Consensus pattern (27 bp):
CCAGAAACAGATATTGTGGCATAGCCA
Found at i:62292926 original size:54 final size:54
Alignment explanation
Indices: 62292827--62292935 Score: 150
Period size: 54 Copynumber: 2.0 Consensus size: 54
62292817 CATATTGCTG
* *
62292827 CCAGAACAGATATTGTGACAGAGTCACCGAATACAGATATTTGTGGCATAGCCA
1 CCAGAACAGATATTGTGACAGAGTCACCGAATACAGATATATGTGGCAAAGCCA
* *
62292881 CCAGAACAGATATTTGTGGCATAGTCACCAGAA-ACAGATA-ATGTGGCAAAGCCA
1 CCAGAACAGATA-TTGTGACAGAGTCACC-GAATACAGATATATGTGGCAAAGCCA
62292935 C
1 C
62292936 TTAACAGAAT
Statistics
Matches: 49, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
54 25 0.51
55 21 0.43
56 3 0.06
ACGTcount: A:0.37, C:0.21, G:0.22, T:0.20
Consensus pattern (54 bp):
CCAGAACAGATATTGTGACAGAGTCACCGAATACAGATATATGTGGCAAAGCCA
Done.