Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 192 of 349
Found at i:62293118 original size:22 final size:22
Alignment explanation
Indices: 62293093--62293156 Score: 67
Period size: 22 Copynumber: 2.9 Consensus size: 22
62293083 GTAAATACGT
*
62293093 TTGGCACATAGCCATAATCAAG
1 TTGGCACAAAGCCATAATCAAG
* *
62293115 TTGGCACAGAGCCAT-ATGCAGG
1 TTGGCACAAAGCCATAAT-CAAG
* *
62293137 TTGACATAAAGCCATAATCA
1 TTGGCACAAAGCCATAATCA
62293157 GAAGGCTTTA
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 2 0.06
22 31 0.89
23 2 0.06
ACGTcount: A:0.36, C:0.22, G:0.20, T:0.22
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAAG
Found at i:62293995 original size:27 final size:27
Alignment explanation
Indices: 62293584--62293993 Score: 545
Period size: 27 Copynumber: 15.3 Consensus size: 27
62293574 GAGGCAAAAT
* * * *
62293584 GGTAATTTTACCCCACA-AGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
62293610 GGTAATTCCACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
62293637 AGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
62293664 GGTAATTCTACCCTACAGGGGTATTGC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
62293691 GATAATTCTACCCTATAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
62293718 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
62293745 GGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
62293772 AGTAATTCTACCCTACAGGGTTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
62293799 GGTAATTCTACCCTACAGGGTTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
**
62293826 AATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
62293853 GATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
62293880 GGCAATTCTACCCTACAGGGGTATTGC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
62293907 GATAATT-TACCCTACAAGGGTATTAC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
62293933 GGTAATTCTACCCTACATGAGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
62293960 GGTAATTTTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
62293987 AGTAATT
1 GGTAATT
62293994 TTGTAAACCA
Statistics
Matches: 336, Mismatches: 46, Indels: 3
0.87 0.12 0.01
Matches are distributed among these distances:
26 37 0.11
27 299 0.89
ACGTcount: A:0.26, C:0.21, G:0.19, T:0.34
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:62294074 original size:27 final size:26
Alignment explanation
Indices: 62294055--62294238 Score: 183
Period size: 27 Copynumber: 6.9 Consensus size: 26
62294045 TAACTTTGTA
62294055 AATCAGGGGTATTTTGGTAATTTTAC
1 AATCAGGGGTATTTTGGTAATTTTAC
* * * *
62294081 AAAT-TGAGGATATTTCGGTAATTTCAC
1 -AATCAG-GGGTATTTTGGTAATTTTAC
* *
62294108 AAACTAGTGGTATTTTGGTAATTTTAC
1 AATC-AGGGGTATTTTGGTAATTTTAC
* *
62294135 TGATCAAGGGTATTTTGGTAATTTTAC
1 -AATCAGGGGTATTTTGGTAATTTTAC
* *
62294162 AAACTAGGGGTATTTTGATAATTTTAC
1 AATC-AGGGGTATTTTGGTAATTTTAC
*
62294189 AAACCAGGGGTATTTTGGTAATTTTAC
1 -AATCAGGGGTATTTTGGTAATTTTAC
*
62294216 ATACCAGGGGTA-TTTGGTAATTT
1 A-ATCAGGGGTATTTTGGTAATTT
62294239 GGTAAACTAA
Statistics
Matches: 130, Mismatches: 20, Indels: 15
0.79 0.12 0.09
Matches are distributed among these distances:
26 17 0.13
27 107 0.82
28 6 0.05
ACGTcount: A:0.29, C:0.09, G:0.21, T:0.41
Consensus pattern (26 bp):
AATCAGGGGTATTTTGGTAATTTTAC
Found at i:62294123 original size:54 final size:54
Alignment explanation
Indices: 62294059--62294238 Score: 209
Period size: 54 Copynumber: 3.4 Consensus size: 54
62294049 TTTGTAAATC
**
62294059 AGGGGTATTTTGGTAATTTTACAAATTGAGGATATTTCGGTAATTTCACAAACT
1 AGGGGTATTTTGGTAATTTTACAAATCAAGGATATTTCGGTAATTTCACAAACT
* ** * * *
62294113 AGTGGTATTTTGGTAATTTTACTGATCAAGGGTATTTTGGTAATTTTACAAACT
1 AGGGGTATTTTGGTAATTTTACAAATCAAGGATATTTCGGTAATTTCACAAACT
* * * * * * * *
62294167 AGGGGTATTTTGATAATTTTACAAACCAGGGGTATTTTGGTAATTTTACATACC
1 AGGGGTATTTTGGTAATTTTACAAATCAAGGATATTTCGGTAATTTCACAAACT
62294221 AGGGGTA-TTTGGTAATTT
1 AGGGGTATTTTGGTAATTT
62294239 GGTAAACTAA
Statistics
Matches: 109, Mismatches: 17, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
53 10 0.09
54 99 0.91
ACGTcount: A:0.29, C:0.08, G:0.22, T:0.41
Consensus pattern (54 bp):
AGGGGTATTTTGGTAATTTTACAAATCAAGGATATTTCGGTAATTTCACAAACT
Found at i:62294154 original size:81 final size:81
Alignment explanation
Indices: 62294056--62294238 Score: 246
Period size: 81 Copynumber: 2.3 Consensus size: 81
62294046 AACTTTGTAA
* * * *
62294056 ATCAGGGGTATTTTGGTAATTTTACAAA-TTGAGGATATTTCGGTAATTTCACAAACTAGTGGTA
1 ATCAGGGGTATTTTGGTAATTTTACAAACTAG-GGATATTTCGATAATTTCACAAACCAGGGGTA
62294120 TTTTGGTAATTTTAC-T
65 TTTTGGTAATTTTACAT
* * * *
62294136 GATCAAGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGATAATTTTACAAACCAGGGGTA
1 -ATCAGGGGTATTTTGGTAATTTTACAAACTAGGGATATTTCGATAATTTCACAAACCAGGGGTA
62294201 TTTTGGTAATTTTACAT
65 TTTTGGTAATTTTACAT
*
62294218 ACCAGGGGTA-TTTGGTAATTT
1 ATCAGGGGTATTTTGGTAATTT
62294239 GGTAAACTAA
Statistics
Matches: 90, Mismatches: 10, Indels: 5
0.86 0.10 0.05
Matches are distributed among these distances:
80 11 0.12
81 76 0.84
82 3 0.03
ACGTcount: A:0.29, C:0.09, G:0.21, T:0.41
Consensus pattern (81 bp):
ATCAGGGGTATTTTGGTAATTTTACAAACTAGGGATATTTCGATAATTTCACAAACCAGGGGTAT
TTTGGTAATTTTACAT
Found at i:62298237 original size:21 final size:22
Alignment explanation
Indices: 62298212--62298252 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
62298202 TTTATTCATA
62298212 ATTCACAAATCAAA-ACATAAC
1 ATTCACAAATCAAAGACATAAC
* *
62298233 ATTCATAACTCAAAGACATA
1 ATTCACAAATCAAAGACATA
62298253 CTAAAACATA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 12 0.71
22 5 0.29
ACGTcount: A:0.54, C:0.22, G:0.02, T:0.22
Consensus pattern (22 bp):
ATTCACAAATCAAAGACATAAC
Found at i:62299784 original size:42 final size:43
Alignment explanation
Indices: 62299727--62299840 Score: 149
Period size: 43 Copynumber: 2.7 Consensus size: 43
62299717 CATCAATTTA
* * *
62299727 TGATTTACGTGTAAGACCATGTCTGGTACATTGGCATCG-TATT
1 TGATTT-CATGTAAGACCATGTCTGGGACAGTGGCATCGATATT
* *
62299770 TGATTTCATGTAAGACCCTTTCTGGGACAGTGGCATCGATATT
1 TGATTTCATGTAAGACCATGTCTGGGACAGTGGCATCGATATT
* *
62299813 TGATTACATGTAAGACCAAGTCTGGGAC
1 TGATTTCATGTAAGACCATGTCTGGGAC
62299841 GTTCGCATTG
Statistics
Matches: 61, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
42 27 0.44
43 34 0.56
ACGTcount: A:0.25, C:0.18, G:0.24, T:0.33
Consensus pattern (43 bp):
TGATTTCATGTAAGACCATGTCTGGGACAGTGGCATCGATATT
Found at i:62303637 original size:43 final size:42
Alignment explanation
Indices: 62303574--62303654 Score: 117
Period size: 43 Copynumber: 1.9 Consensus size: 42
62303564 TCGCATCTAC
62303574 AATGAACTCAAACCACTCAACGAGCTCGAATGCTCACATCCAT
1 AATGAACTCAAACCACTCAACGAGCTCGAATGC-CACATCCAT
** * *
62303617 AATGAACTCGGACCATTCAACGAGCTCGGATGCCACAT
1 AATGAACTCAAACCACTCAACGAGCTCGAATGCCACAT
62303655 ATCTCACGAA
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
42 5 0.15
43 29 0.85
ACGTcount: A:0.35, C:0.31, G:0.16, T:0.19
Consensus pattern (42 bp):
AATGAACTCAAACCACTCAACGAGCTCGAATGCCACATCCAT
Found at i:62303672 original size:42 final size:43
Alignment explanation
Indices: 62303585--62303678 Score: 111
Period size: 42 Copynumber: 2.2 Consensus size: 43
62303575 ATGAACTCAA
*
62303585 ACCACTCAACGAGCTCGAATGCTCACATCCATAATGAACTCGG
1 ACCACTCAACGAGCTCGAATGCTCACATCCATAACGAACTCGG
* * * * *
62303628 ACCATTCAACGAGCTCGGATGC-CACATATC-TCACGAACTTGG
1 ACCACTCAACGAGCTCGAATGCTCACAT-CCATAACGAACTCGG
62303670 ACCACTCAA
1 ACCACTCAA
62303679 AAAGTTTGGA
Statistics
Matches: 43, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
42 22 0.51
43 21 0.49
ACGTcount: A:0.32, C:0.33, G:0.16, T:0.19
Consensus pattern (43 bp):
ACCACTCAACGAGCTCGAATGCTCACATCCATAACGAACTCGG
Found at i:62304984 original size:40 final size:40
Alignment explanation
Indices: 62304940--62305015 Score: 116
Period size: 40 Copynumber: 1.9 Consensus size: 40
62304930 CGGCTAAGAA
* *
62304940 TGGCACTTGGTGTGCTATTTGAAATAGCTTCGGCTAAATG
1 TGGCACTTGGTGTGCGATTTGAAATAGATTCGGCTAAATG
**
62304980 TGGCACTTGGTGTGCGATTTGTGATAGATTCGGCTA
1 TGGCACTTGGTGTGCGATTTGAAATAGATTCGGCTA
62305016 TATATATATA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 32 1.00
ACGTcount: A:0.20, C:0.14, G:0.30, T:0.36
Consensus pattern (40 bp):
TGGCACTTGGTGTGCGATTTGAAATAGATTCGGCTAAATG
Found at i:62312144 original size:42 final size:42
Alignment explanation
Indices: 62312037--62312148 Score: 104
Period size: 42 Copynumber: 2.6 Consensus size: 42
62312027 AACTCGTACA
* * * * *
62312037 ATGCCAATGTCCCGGACGTGGTCTTACATGTAATCTAATATCG
1 ATGCCACTGT-CCAGACATGGTCTTACATGAAATCAAATATCG
*
62312080 ATGCCACTGTCCAGACAGGGTCTTACATGAAATCAAATAT-G
1 ATGCCACTGTCCAGACATGGTCTTACATGAAATCAAATATCG
*
62312121 ATGTCGA-TGTCCCA-AGCATGGTCTTACA
1 ATG-CCACTGT-CCAGA-CATGGTCTTACA
62312149 CGTAAATATC
Statistics
Matches: 58, Mismatches: 8, Indels: 7
0.79 0.11 0.10
Matches are distributed among these distances:
41 8 0.14
42 41 0.71
43 9 0.16
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.28
Consensus pattern (42 bp):
ATGCCACTGTCCAGACATGGTCTTACATGAAATCAAATATCG
Found at i:62313991 original size:37 final size:37
Alignment explanation
Indices: 62313939--62314085 Score: 104
Period size: 37 Copynumber: 3.9 Consensus size: 37
62313929 GTTTAAGCTA
* *
62313939 TTAATTAAGTTATAATTTAGACAACTTTAATATGAGT
1 TTAATTATGTCATAATTTAGACAACTTTAATATGAGT
* **
62313976 TTAATTATGTCATAATTTGGACATA-TTTAATAAATGTTT
1 TTAATTATGTCATAATTTAGACA-ACTTTAAT--ATGAGT
* * *
62314015 TTAATTATGTCATAGCA-TAAGACATCTTAAATAT-ATGT
1 TTAATTATGTCATA--ATTTAGACAACTTTAATATGA-GT
* * *
62314053 TTAAATATGTTC-TAGTTTAGACACCTTTAATAT
1 TTAATTATG-TCATAATTTAGACAACTTTAATAT
62314086 ATGTTTTGTT
Statistics
Matches: 85, Mismatches: 16, Indels: 18
0.71 0.13 0.15
Matches are distributed among these distances:
37 40 0.47
38 14 0.16
39 20 0.24
40 10 0.12
41 1 0.01
ACGTcount: A:0.37, C:0.08, G:0.10, T:0.44
Consensus pattern (37 bp):
TTAATTATGTCATAATTTAGACAACTTTAATATGAGT
Found at i:62315341 original size:23 final size:23
Alignment explanation
Indices: 62315301--62315344 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
62315291 GTGTAAGGTG
*
62315301 TGAAATATATATATAAAAAGATT
1 TGAAATATATATAAAAAAAGATT
62315324 TGAAAT-TATAATAAAAAAAGA
1 TGAAATATAT-ATAAAAAAAGA
62315345 GAAAGGCTAG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 3 0.16
23 16 0.84
ACGTcount: A:0.61, C:0.00, G:0.09, T:0.30
Consensus pattern (23 bp):
TGAAATATATATAAAAAAAGATT
Found at i:62322685 original size:40 final size:40
Alignment explanation
Indices: 62322633--62322730 Score: 117
Period size: 40 Copynumber: 2.5 Consensus size: 40
62322623 CTAAGTCTAT
* *
62322633 ATCGCACACTTAGTGCC-TTATATAGTCGAAGCTATGCCAA
1 ATCGCACACTTAGTGCCATT-TATAGCCGAAGCTATACCAA
* * * **
62322673 TTCGCACACTTAGTGCCATTTGTAGCCGAAGCTTTATTAA
1 ATCGCACACTTAGTGCCATTTATAGCCGAAGCTATACCAA
62322713 ATCGCACACTTAGTGCCA
1 ATCGCACACTTAGTGCCA
62322731 AACACTTTCG
Statistics
Matches: 49, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
40 47 0.96
41 2 0.04
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.30
Consensus pattern (40 bp):
ATCGCACACTTAGTGCCATTTATAGCCGAAGCTATACCAA
Found at i:62335159 original size:32 final size:32
Alignment explanation
Indices: 62335118--62335181 Score: 110
Period size: 32 Copynumber: 2.0 Consensus size: 32
62335108 GGGGAGAGAG
*
62335118 TTGTAACAACCCATTTTTAGTCAAATCGGAAC
1 TTGTAACAACCCATTTTTAGTCAAATCAGAAC
*
62335150 TTGTAACAACCCGTTTTTAGTCAAATCAGAAC
1 TTGTAACAACCCATTTTTAGTCAAATCAGAAC
62335182 AATGGTTTCA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.34, C:0.22, G:0.12, T:0.31
Consensus pattern (32 bp):
TTGTAACAACCCATTTTTAGTCAAATCAGAAC
Found at i:62336485 original size:23 final size:24
Alignment explanation
Indices: 62336435--62336493 Score: 77
Period size: 23 Copynumber: 2.5 Consensus size: 24
62336425 TCAGTTCGTA
*
62336435 AGAGCTTATTGTTCTCAGCTCATC
1 AGAGCTTACTGTTCTCAGCTCATC
*
62336459 AGAGCTTACTGTT-TTAGCTCAAT-
1 AGAGCTTACTGTTCTCAGCTC-ATC
62336482 AGAGCTTACTGT
1 AGAGCTTACTGT
62336494 CCATCAGATC
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
23 18 0.56
24 14 0.44
ACGTcount: A:0.24, C:0.20, G:0.19, T:0.37
Consensus pattern (24 bp):
AGAGCTTACTGTTCTCAGCTCATC
Found at i:62340206 original size:16 final size:16
Alignment explanation
Indices: 62340187--62340217 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
62340177 CTTCTTCACT
62340187 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
62340203 TACTTACTTACTTAA
1 TACTCACTTACTTAA
62340218 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:62340223 original size:20 final size:20
Alignment explanation
Indices: 62340184--62340223 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
62340174 AAACTTCTTC
* *
62340184 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
62340204 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
62340224 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:62340599 original size:55 final size:53
Alignment explanation
Indices: 62340409--62340628 Score: 204
Period size: 53 Copynumber: 4.2 Consensus size: 53
62340399 ACATGAGTAC
* * * * *
62340409 CTTACCACTACCATGTCTTGTCATGGTCTTACAT-GG---TAT-CCTTTTGAAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCTTTGCCTTATG-AA
* * *
62340458 CTTACCATTGCCATGTCTCGACATGGTCTTACATGGTATCTTTGCCTTATGAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCTTTGCCTTATGAA
* *
62340511 CTCACCAATGCCATGCCTT-AGCATGGTCTTACATGGGA-CATTTGCCTTATAGTAA
1 CTTACCAATGCCATGTCTTGA-CATGGTCTTACATGGGATC-TTTGCCTTAT-G-AA
* * *
62340566 CTTATCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTA-GAAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCTTTGCCTTATG-AA
62340619 CCTTACCAAT
1 -CTTACCAAT
62340629 TGTCATTGTA
Statistics
Matches: 140, Mismatches: 19, Indels: 19
0.79 0.11 0.11
Matches are distributed among these distances:
49 30 0.21
50 1 0.01
52 2 0.01
53 48 0.34
54 15 0.11
55 42 0.30
56 2 0.01
ACGTcount: A:0.24, C:0.25, G:0.16, T:0.35
Consensus pattern (53 bp):
CTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCTTTGCCTTATGAA
Found at i:62344060 original size:43 final size:46
Alignment explanation
Indices: 62344012--62344109 Score: 121
Period size: 48 Copynumber: 2.2 Consensus size: 46
62344002 ATGGTTGCAC
*
62344012 CATGGCAGT-ACAT-G-TGAGATCCCATGTAAGACCATGTCTGGGA
1 CATGGCAGTGACATAGATGAGATCCCATATAAGACCATGTCTGGGA
* * *
62344055 CATGGCATTGGCATCGAGATGAGATCTCATATAAGACCATGTCTGGGA
1 CATGGCAGTGACAT--AGATGAGATCCCATATAAGACCATGTCTGGGA
62344103 CATGGCA
1 CATGGCA
62344110 TCGGCATTGA
Statistics
Matches: 46, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
43 8 0.17
44 3 0.07
47 1 0.02
48 34 0.74
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.23
Consensus pattern (46 bp):
CATGGCAGTGACATAGATGAGATCCCATATAAGACCATGTCTGGGA
Found at i:62344090 original size:48 final size:48
Alignment explanation
Indices: 62344029--62344255 Score: 255
Period size: 48 Copynumber: 4.7 Consensus size: 48
62344019 GTACATGTGA
* * *
62344029 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGAGATGA
1 GATCTCATGTAAGACCATGTCTGGGACATGGCATCGGCATCGAGATGT
* * *
62344077 GATCTCATATAAGACCATGTCTGGGACATGGCATCGGCATTGATATGT
1 GATCTCATGTAAGACCATGTCTGGGACATGGCATCGGCATCGAGATGT
*
62344125 G-TGCT-AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGACG-TGT
1 GAT-CTCA-TGTAAGACCATGTCTGGGACATGGCATCGGCATCGA-GATGT
* * * * * *
62344173 GAGCT-AGTGAAAGACCATGTCTGGAACATGGCATCGGCACCAATATGT
1 GATCTCA-TGTAAGACCATGTCTGGGACATGGCATCGGCATCGAGATGT
* *
62344221 GATTTCGTGTAAGACCATGTCTGGGACATGGCATC
1 GATCTCATGTAAGACCATGTCTGGGACATGGCATC
62344256 ATTCTAAGAC
Statistics
Matches: 151, Mismatches: 22, Indels: 12
0.82 0.12 0.06
Matches are distributed among these distances:
47 2 0.01
48 149 0.99
ACGTcount: A:0.26, C:0.21, G:0.29, T:0.25
Consensus pattern (48 bp):
GATCTCATGTAAGACCATGTCTGGGACATGGCATCGGCATCGAGATGT
Found at i:62344149 original size:96 final size:96
Alignment explanation
Indices: 62344036--62344255 Score: 286
Period size: 96 Copynumber: 2.3 Consensus size: 96
62344026 TGAGATCCCA
* *
62344036 TGTAAGACCATGTCTGGGACATGGCATTGGCATCGA-GATGAGATCTCA-T-ATAAGACCATGTC
1 TGTAAGACCATGTCTGGGACATGGCATCGGCATCGACG-TGAGAGCT-AGTGA-AAGACCATGTC
* ***
62344098 TGGGACATGGCATCGGCATTGATATGTG-TGCTAG
63 TGGAACATGGCATCGGCACCAATATGTGAT-CTAG
* *
62344132 TGTAAGACCATGTCTGGGACATGGCATCGGCCTCGACGTGTGAGCTAGTGAAAGACCATGTCTGG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCATCGACGTGAGAGCTAGTGAAAGACCATGTCTGG
* *
62344197 AACATGGCATCGGCACCAATATGTGATTTCG
66 AACATGGCATCGGCACCAATATGTGATCTAG
62344228 TGTAAGACCATGTCTGGGACATGGCATC
1 TGTAAGACCATGTCTGGGACATGGCATC
62344256 ATTCTAAGAC
Statistics
Matches: 110, Mismatches: 10, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
95 1 0.01
96 106 0.96
97 3 0.03
ACGTcount: A:0.25, C:0.20, G:0.29, T:0.25
Consensus pattern (96 bp):
TGTAAGACCATGTCTGGGACATGGCATCGGCATCGACGTGAGAGCTAGTGAAAGACCATGTCTGG
AACATGGCATCGGCACCAATATGTGATCTAG
Found at i:62347724 original size:39 final size:39
Alignment explanation
Indices: 62347679--62347838 Score: 257
Period size: 39 Copynumber: 4.1 Consensus size: 39
62347669 ATGCAAGACA
*
62347679 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCACAGGCTTCGTG
* *
62347718 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTTGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCACAGGCTTCGTG
*
62347757 TTGGAAATGTATCCGGGCTAAAGTCCCACAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCACAGGCTTCGTG
* * *
62347796 CTGGAAATGTGTCCAGGCTAAAGACCCACAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCACAGGCTTCGTG
62347835 CTGG
1 CTGG
62347839 TGCTGGTAAT
Statistics
Matches: 113, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 113 1.00
ACGTcount: A:0.22, C:0.24, G:0.30, T:0.24
Consensus pattern (39 bp):
CTGGAAATGTATCCGGGCTAAAGTCCCACAGGCTTCGTG
Found at i:62353453 original size:39 final size:39
Alignment explanation
Indices: 62353385--62353543 Score: 293
Period size: 39 Copynumber: 4.1 Consensus size: 39
62353375 ATGCAAGACA
62353385 CTGGAAATGTATCC-GGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
62353423 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
62353462 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* *
62353501 CTGGAAATGTGTCCGGGCTAAAGACCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
62353540 CTGG
1 CTGG
62353544 TGCTGGTAAT
Statistics
Matches: 118, Mismatches: 2, Indels: 1
0.98 0.02 0.01
Matches are distributed among these distances:
38 14 0.12
39 104 0.88
ACGTcount: A:0.20, C:0.26, G:0.31, T:0.23
Consensus pattern (39 bp):
CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
Found at i:62360704 original size:27 final size:27
Alignment explanation
Indices: 62360672--62360973 Score: 358
Period size: 27 Copynumber: 11.2 Consensus size: 27
62360662 GTAGGCTAGC
* *
62360672 ATTACCGAAATACCCTTGTAAGGTAGAA
1 ATTACCGAAATACCCCTGTAGGGTA-AA
* *
62360700 A-TACCGAAATACCCTTGTGGGGTAGAA
1 ATTACCGAAATACCCCTGTAGGGTA-AA
62360727 A-TACCGAAATACCCCTGTAGGGTAAA
1 ATTACCGAAATACCCCTGTAGGGTAAA
**
62360753 ATTACTAAAATACCCCTGTAGGGTAAA
1 ATTACCGAAATACCCCTGTAGGGTAAA
* * *
62360780 ATTACTGAAATACCCCTGCAAGGTAAA
1 ATTACCGAAATACCCCTGTAGGGTAAA
* * *
62360807 ATTATCGAAATACCCCTATAGGGTAGA
1 ATTACCGAAATACCCCTGTAGGGTAAA
**
62360834 ATTACTAAAATACCCCTGTAGGGTAAA
1 ATTACCGAAATACCCCTGTAGGGTAAA
* * *
62360861 ATTACTGAAATACCCCTGTAAGGTAGA
1 ATTACCGAAATACCCCTGTAGGGTAAA
* *
62360888 ATTATCGAAATACCCCTATAGGGTAAA
1 ATTACCGAAATACCCCTGTAGGGTAAA
*
62360915 ATTACTGAAATACCCCTGTAGGGT-AA
1 ATTACCGAAATACCCCTGTAGGGTAAA
* * *
62360941 ATTACCGAGATACCCTTGTGGGGTAAA
1 ATTACCGAAATACCCCTGTAGGGTAAA
62360968 ATTACC
1 ATTACC
62360974 ATTTTACCCC
Statistics
Matches: 237, Mismatches: 35, Indels: 5
0.86 0.13 0.02
Matches are distributed among these distances:
26 25 0.11
27 211 0.89
28 1 0.00
ACGTcount: A:0.37, C:0.20, G:0.18, T:0.25
Consensus pattern (27 bp):
ATTACCGAAATACCCCTGTAGGGTAAA
Found at i:62361234 original size:27 final size:26
Alignment explanation
Indices: 62361196--62361278 Score: 103
Period size: 27 Copynumber: 3.1 Consensus size: 26
62361186 TGGAGGAAGC
62361196 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTATGCCAC-AATATCT
* *
62361223 GTTCTGGTGGCTCTGCCATAATATCT
1 GTTCTGGTGGCTATGCCACAATATCT
* * *
62361249 GTATCTGGTGACTTTGTCACAATATCT
1 GT-TCTGGTGGCTATGCCACAATATCT
62361276 GTT
1 GTT
62361279 GACCGATCGA
Statistics
Matches: 49, Mismatches: 6, Indels: 3
0.84 0.10 0.05
Matches are distributed among these distances:
26 10 0.20
27 39 0.80
ACGTcount: A:0.19, C:0.20, G:0.22, T:0.39
Consensus pattern (26 bp):
GTTCTGGTGGCTATGCCACAATATCT
Found at i:62361369 original size:20 final size:20
Alignment explanation
Indices: 62361322--62361369 Score: 69
Period size: 20 Copynumber: 2.4 Consensus size: 20
62361312 CGAAGGCTGT
*
62361322 GTGCCGTTATTGTGGGCTTC
1 GTGCCGATATTGTGGGCTTC
**
62361342 GTATCGATATTGTGGGCTTC
1 GTGCCGATATTGTGGGCTTC
62361362 GTGCCGAT
1 GTGCCGAT
62361370 TATAGACCCG
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.10, C:0.19, G:0.33, T:0.38
Consensus pattern (20 bp):
GTGCCGATATTGTGGGCTTC
Found at i:62361418 original size:22 final size:22
Alignment explanation
Indices: 62361386--62361444 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
62361376 CCCGTTATCG
*
62361386 ATGGCTCTGTGCCAACCTAAAT
1 ATGGCTTTGTGCCAACCTAAAT
* * * *
62361408 ATGGCTTTGTGCCATCTTGACT
1 ATGGCTTTGTGCCAACCTAAAT
*
62361430 ATGGCTTCGTGCCAA
1 ATGGCTTTGTGCCAA
62361445 ACGTATTTAC
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.20, C:0.25, G:0.22, T:0.32
Consensus pattern (22 bp):
ATGGCTTTGTGCCAACCTAAAT
Found at i:62361632 original size:27 final size:27
Alignment explanation
Indices: 62361602--62361709 Score: 112
Period size: 27 Copynumber: 4.0 Consensus size: 27
62361592 ATTTTGTTAA
* *
62361602 GTGGCTTTGCCACATTATCTGTTTCTG
1 GTGGCTCTGCCACAATATCTGTTTCTG
* * *
62361629 GTGGCTATGCCATAAATATCTATTT-TG
1 GTGGCTCTGCCA-CAATATCTGTTTCTG
* *
62361656 GTGGCTCTGCCACAGTATCTGTATCTG
1 GTGGCTCTGCCACAATATCTGTTTCTG
* *
62361683 GTGACTCTGTCACAATATCTG-TTCTG
1 GTGGCTCTGCCACAATATCTGTTTCTG
62361709 G
1 G
62361710 CAGCCATGCT
Statistics
Matches: 66, Mismatches: 13, Indels: 5
0.79 0.15 0.06
Matches are distributed among these distances:
26 13 0.20
27 44 0.67
28 9 0.14
ACGTcount: A:0.18, C:0.21, G:0.22, T:0.39
Consensus pattern (27 bp):
GTGGCTCTGCCACAATATCTGTTTCTG
Found at i:62364019 original size:27 final size:27
Alignment explanation
Indices: 62363789--62364022 Score: 270
Period size: 27 Copynumber: 8.7 Consensus size: 27
62363779 AATCTCATAT
* * *
62363789 CTGTAGGCTAGCATTACTGAAATACCC
1 CTGTAGGGTAGAATTACCGAAATACCC
* * *
62363816 TTGTAAGGTAGAAATACCGAAATACCC
1 CTGTAGGGTAGAATTACCGAAATACCC
* * *
62363843 TTGTGGGGTAGAAATACCGAAATACCC
1 CTGTAGGGTAGAATTACCGAAATACCC
* *
62363870 CTATAGGGTAGAATTACTGAAATACCC
1 CTGTAGGGTAGAATTACCGAAATACCC
*
62363897 CTGTAGGGTAGAATTACTGAAATACCC
1 CTGTAGGGTAGAATTACCGAAATACCC
* *
62363924 CTGTAAGGTAGAATTATCGAAATACCC
1 CTGTAGGGTAGAATTACCGAAATACCC
* **
62363951 CTGTAAGGTAGAATTACTAAAATACCC
1 CTGTAGGGTAGAATTACCGAAATACCC
* *
62363978 CTGTAGGTTAGAATTACCGAGATACCC
1 CTGTAGGGTAGAATTACCGAAATACCC
* * *
62364005 TTGTGGGGTAAAATTACC
1 CTGTAGGGTAGAATTACC
62364023 ATTTTACCCC
Statistics
Matches: 178, Mismatches: 29, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 178 1.00
ACGTcount: A:0.35, C:0.19, G:0.21, T:0.26
Consensus pattern (27 bp):
CTGTAGGGTAGAATTACCGAAATACCC
Found at i:62364283 original size:27 final size:26
Alignment explanation
Indices: 62364245--62364327 Score: 103
Period size: 27 Copynumber: 3.1 Consensus size: 26
62364235 TGGAGGAAGC
62364245 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTATGCCAC-AATATCT
* *
62364272 GTTCTGGAGGCTCTGCCACAATATCT
1 GTTCTGGTGGCTATGCCACAATATCT
* * *
62364298 GTATCTGGTGACTTTGTCACAATATCT
1 GT-TCTGGTGGCTATGCCACAATATCT
62364325 GTT
1 GTT
62364328 GACCGATCAA
Statistics
Matches: 49, Mismatches: 6, Indels: 3
0.84 0.10 0.05
Matches are distributed among these distances:
26 10 0.20
27 39 0.80
ACGTcount: A:0.20, C:0.22, G:0.22, T:0.36
Consensus pattern (26 bp):
GTTCTGGTGGCTATGCCACAATATCT
Found at i:62364469 original size:22 final size:22
Alignment explanation
Indices: 62364444--62364493 Score: 55
Period size: 22 Copynumber: 2.3 Consensus size: 22
62364434 GATGGCTCTG
62364444 TGCCAACCTAAATATGGCTTCA
1 TGCCAACCTAAATATGGCTTCA
* * * * *
62364466 TGCCATCTTGACTATGGCTTCG
1 TGCCAACCTAAATATGGCTTCA
62364488 TGCCAA
1 TGCCAA
62364494 ACGTATTTAT
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.24, C:0.28, G:0.18, T:0.30
Consensus pattern (22 bp):
TGCCAACCTAAATATGGCTTCA
Found at i:62364700 original size:27 final size:26
Alignment explanation
Indices: 62364667--62364752 Score: 118
Period size: 27 Copynumber: 3.2 Consensus size: 26
62364657 CATTACCTAT
* *
62364667 TTCTGGTGGCTATGCCACAAATATCTG
1 TTCTGGTGGCTCTGTCAC-AATATCTG
*
62364694 TTTTGGTGGCTCTGTCACAATATCTG
1 TTCTGGTGGCTCTGTCACAATATCTG
*
62364720 TATCTGGTGACTCTGTCACAATATCTG
1 T-TCTGGTGGCTCTGTCACAATATCTG
62364747 TTCTGG
1 TTCTGG
62364753 CAGCCATGCT
Statistics
Matches: 53, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
26 14 0.26
27 39 0.74
ACGTcount: A:0.19, C:0.21, G:0.22, T:0.38
Consensus pattern (26 bp):
TTCTGGTGGCTCTGTCACAATATCTG
Found at i:62377377 original size:6 final size:6
Alignment explanation
Indices: 62377366--62377402 Score: 67
Period size: 6 Copynumber: 6.3 Consensus size: 6
62377356 CTAAATTCCC
62377366 AAATTA AAATTA AAATTA AAA-TA AAATTA AAATTA AA
1 AAATTA AAATTA AAATTA AAATTA AAATTA AAATTA AA
62377403 GAGGCTTTAT
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
5 5 0.17
6 25 0.83
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (6 bp):
AAATTA
Found at i:62377392 original size:11 final size:11
Alignment explanation
Indices: 62377366--62377398 Score: 57
Period size: 11 Copynumber: 2.9 Consensus size: 11
62377356 CTAAATTCCC
62377366 AAATTAAAATTA
1 AAATTAAAA-TA
62377378 AAATTAAAATA
1 AAATTAAAATA
62377389 AAATTAAAAT
1 AAATTAAAAT
62377399 TAAAGAGGCT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 12 0.57
12 9 0.43
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (11 bp):
AAATTAAAATA
Found at i:62377392 original size:17 final size:17
Alignment explanation
Indices: 62377370--62377402 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
62377360 ATTCCCAAAT
62377370 TAAAATTAAAATTAAAA
1 TAAAATTAAAATTAAAA
62377387 TAAAATTAAAATTAAA
1 TAAAATTAAAATTAAA
62377403 GAGGCTTTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (17 bp):
TAAAATTAAAATTAAAA
Found at i:62386052 original size:41 final size:40
Alignment explanation
Indices: 62385867--62386065 Score: 240
Period size: 40 Copynumber: 5.0 Consensus size: 40
62385857 AATTTAACCA
* *
62385867 GATATAGCT-ACTCGCTCAAATGCCTTCGGGACATAGCCCG
1 GATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGCCCG
* * * * *
62385907 GTTAGAGTAACTCGCACAATTGCCTTTGGGACTTAGCCCA
1 GATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCG
* * *
62385947 GATTTAGTAATTCGCACAAATGCCTTCGGGACGT-GCCCG
1 GATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCG
* *
62385986 GATATAGTAACTTGCACAAAGGCCTTCGGGACTTAGCCCGG
1 GATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCC-G
* *
62386027 GATATAGTAGCTCGCACGAATGCCTTCGGGACTTAGCCC
1 GATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCC
62386066 AGAATTAGCC
Statistics
Matches: 132, Mismatches: 24, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
39 34 0.26
40 62 0.47
41 36 0.27
ACGTcount: A:0.25, C:0.27, G:0.25, T:0.24
Consensus pattern (40 bp):
GATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCG
Found at i:62386087 original size:120 final size:120
Alignment explanation
Indices: 62385883--62386107 Score: 294
Period size: 120 Copynumber: 1.9 Consensus size: 120
62385873 GCTACTCGCT
* * *
62385883 CAAATGCCTTCGGGACATAGCCCGGTTAGAGTAACTCGCACAATTGCCTTTGGGACTTAGCCCAG
1 CAAAGGCCTTCGGGACATAGCCCGGATAGAGTAACTCGCACAATTGCCTTCGGGACTTAGCCCAG
* * *
62385948 ATTTAGTAATTCGCACAAATGC-CTTCGGGACGT-GCCCGGATATAGTAACTTGCA
66 AATTAGCAATTAGCACAAATGCTC-TCGGGACGTAGCCCGGATATAGTAACTTGCA
* * *
62386002 CAAAGGCCTTCGGGACTTAGCCCGGGATATAGTAGCTCGCACGAA-TGCCTTCGGGACTTAGCCC
1 CAAAGGCCTTCGGGACATAGCCC-GGATAGAGTAACTCGCAC-AATTGCCTTCGGGACTTAGCCC
* * *
62386066 AGAATTAGCCATTAGCTCAAATGCTCTCGGGACTTAGCCCGG
64 AGAATTAGCAATTAGCACAAATGCTCTCGGGACGTAGCCCGG
62386108 TTATCATCCG
Statistics
Matches: 90, Mismatches: 12, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
119 21 0.23
120 60 0.67
121 9 0.10
ACGTcount: A:0.25, C:0.27, G:0.25, T:0.24
Consensus pattern (120 bp):
CAAAGGCCTTCGGGACATAGCCCGGATAGAGTAACTCGCACAATTGCCTTCGGGACTTAGCCCAG
AATTAGCAATTAGCACAAATGCTCTCGGGACGTAGCCCGGATATAGTAACTTGCA
Found at i:62394195 original size:41 final size:40
Alignment explanation
Indices: 62394007--62394250 Score: 255
Period size: 40 Copynumber: 6.1 Consensus size: 40
62393997 GGAATTTAAA
* *
62394007 CCGGATATAGCT-ACTCGCTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
62394047 CCGGTTAGAGTAACTCGCACAATTGCCTTCGGGACTTA-C
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
62394086 GCCGGATTTAGTAATTCGCACAAATGCCTTCGGGACGT-GC
1 -CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
62394126 CCGGATATAGTAACTTGCACAAAGGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
62394166 CCGGGATATAGTAGCTCGCACGAATGCCTTCGGGACTTAGC
1 CC-GGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
** * * *
62394207 CCGGA-ATTAGCCACTAGCTCAAATG-CTCTCAGGACTTAGC
1 CCGGATA-TAGTAACTCGCACAAATGCCT-TCGGGACTTAGC
62394247 CCGG
1 CCGG
62394251 TTATCATCCG
Statistics
Matches: 170, Mismatches: 27, Indels: 14
0.81 0.13 0.07
Matches are distributed among these distances:
39 37 0.22
40 97 0.57
41 36 0.21
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.23
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:62397293 original size:40 final size:40
Alignment explanation
Indices: 62397209--62397392 Score: 205
Period size: 40 Copynumber: 4.6 Consensus size: 40
62397199 TTGAATGCTG
* * * *
62397209 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTATTAAT
**
62397248 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTATTAAT
1 -TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTATTAAT
* * *
62397289 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
* *
62397329 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATT-AAT
62397369 TCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
62397393 GTATGAGTTA
Statistics
Matches: 125, Mismatches: 14, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
39 2 0.02
40 113 0.90
41 10 0.08
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
Found at i:62397346 original size:80 final size:81
Alignment explanation
Indices: 62397209--62397389 Score: 230
Period size: 80 Copynumber: 2.3 Consensus size: 81
62397199 TTGAATGCTG
* *
62397209 TCCGGGCTAAGTCCCGAAGG-CTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
* *
62397273 TGTGCGAGTTATT-AAT
66 CGTGCGAGTT-TTAAAA
**
62397289 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCG-AGAT-ACTA-ATTCCGGGTTAAG-TCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAG-TGACTATA-TCCGGACTAAGAT-CCGAAGGC
62397350 ATTCGTGCGAGTTTTAAAA
63 ATTCGTGCGAGTTTTAAAA
62397369 TCCGGGTTAAGTCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGC
62397390 ATTGTATGAG
Statistics
Matches: 90, Mismatches: 6, Indels: 10
0.85 0.06 0.09
Matches are distributed among these distances:
79 4 0.04
80 77 0.86
81 9 0.10
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.27
Consensus pattern (81 bp):
TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTTTTAAAA
Found at i:62405205 original size:40 final size:40
Alignment explanation
Indices: 62405121--62405304 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 40
62405111 TTGAATGCTG
* * * *
62405121 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTATTAAT
**
62405160 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTATTAAT
1 -TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTATTAAT
* * * *
62405201 TCCGGGTTAAGTCCCAAAGGCCTTTGTGCGAGATACTAAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
* *
62405241 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATT-AAT
62405281 TCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
62405305 GTATGAGTTA
Statistics
Matches: 123, Mismatches: 16, Indels: 10
0.83 0.11 0.07
Matches are distributed among these distances:
39 2 0.02
40 111 0.90
41 10 0.08
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
Found at i:62413438 original size:27 final size:26
Alignment explanation
Indices: 62413390--62413449 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
62413380 ACGAGGCTAC
*
62413390 CAGATATTGTGACAAAGTCACCAGATA
1 CAGATATTGTGACAAAGCCACCAGA-A
* * * *
62413417 CAGATATTGTGGCTAGGCCACCAGAG
1 CAGATATTGTGACAAAGCCACCAGAA
62413443 CAGATAT
1 CAGATAT
62413450 ATACATATGT
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACAAAGCCACCAGAA
Found at i:62428568 original size:286 final size:286
Alignment explanation
Indices: 62428056--62428631 Score: 1143
Period size: 286 Copynumber: 2.0 Consensus size: 286
62428046 AAGGGGAGTG
62428056 TTCAGAAGAGAAAATTTAGGAAATAGATTGGGGAGTTATCAGGGAGAAAAACGAGGAGATGAGAA
1 TTCAGAAGAGAAAATTTAGGAAATAGATTGGGGAGTTATCAGGGAGAAAAACGAGGAGATGAGAA
62428121 GGGGGAAGTGTTGGAGCCGAAATGAGAATTTAGCTATGAGGAATTCGGCTATACGGGCTATAAAT
66 GGGGGAAGTGTTGGAGCCGAAATGAGAATTTAGCTATGAGGAATTCGGCTATACGGGCTATAAAT
62428186 AGGTGCCGAATGCAAGGTTTCCAGGCTAATGCCAAAATCTTTGTCACTCTGTTACCGAAAACCCT
131 AGGTGCCGAATGCAAGGTTTCCAGGCTAATGCCAAAATCTTTGTCACTCTGTTACCGAAAACCCT
62428251 TTTCTCTTCAAGATCCAAAAAGCCAAAAACCCTTGCTTCTTTATTTCTCTTCTTGTGCAAATTTT
196 TTTCTCTTCAAGATCCAAAAAGCCAAAAACCCTTGCTTCTTTATTTCTCTTCTTGTGCAAATTTT
62428316 TATTCTTCTTCTACTCAGGTTTTTGA
261 TATTCTTCTTCTACTCAGGTTTTTGA
62428342 TTCAGAAGAGAAAATTTAGGAAATAGATTGGGGAGTTATCAGGGAGAAAAACGAGGAGATGAGAA
1 TTCAGAAGAGAAAATTTAGGAAATAGATTGGGGAGTTATCAGGGAGAAAAACGAGGAGATGAGAA
*
62428407 GGGGGAAGTGTTGGAGCCGAAATGGGAATTTAGCTATGAGGAATTCGGCTATACGGGCTATAAAT
66 GGGGGAAGTGTTGGAGCCGAAATGAGAATTTAGCTATGAGGAATTCGGCTATACGGGCTATAAAT
62428472 AGGTGCCGAATGCAAGGTTTCCAGGCTAATGCCAAAATCTTTGTCACTCTGTTACCGAAAACCCT
131 AGGTGCCGAATGCAAGGTTTCCAGGCTAATGCCAAAATCTTTGTCACTCTGTTACCGAAAACCCT
62428537 TTTCTCTTCAAGATCCAAAAAGCCAAAAACCCTTGCTTCTTTATTTCTCTTCTTGTGCAAATTTT
196 TTTCTCTTCAAGATCCAAAAAGCCAAAAACCCTTGCTTCTTTATTTCTCTTCTTGTGCAAATTTT
62428602 TATTCTTCTTCTACTCAGGTTTTTGA
261 TATTCTTCTTCTACTCAGGTTTTTGA
62428628 TTCA
1 TTCA
62428632 TTTTTTTTAG
Statistics
Matches: 289, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
286 289 1.00
ACGTcount: A:0.31, C:0.17, G:0.22, T:0.30
Consensus pattern (286 bp):
TTCAGAAGAGAAAATTTAGGAAATAGATTGGGGAGTTATCAGGGAGAAAAACGAGGAGATGAGAA
GGGGGAAGTGTTGGAGCCGAAATGAGAATTTAGCTATGAGGAATTCGGCTATACGGGCTATAAAT
AGGTGCCGAATGCAAGGTTTCCAGGCTAATGCCAAAATCTTTGTCACTCTGTTACCGAAAACCCT
TTTCTCTTCAAGATCCAAAAAGCCAAAAACCCTTGCTTCTTTATTTCTCTTCTTGTGCAAATTTT
TATTCTTCTTCTACTCAGGTTTTTGA
Found at i:62429517 original size:28 final size:28
Alignment explanation
Indices: 62429474--62429585 Score: 109
Period size: 28 Copynumber: 4.0 Consensus size: 28
62429464 CATGACTGTA
*
62429474 AATGTGATTTGGGCCTAGT-GGCCATATG
1 AATGTGA-TTGGGCCTAATGGGCCATATG
* * * *
62429502 AATGCGATTTGCGCCTAATGGGCCACATA
1 AATGTGA-TTGGGCCTAATGGGCCATATG
*
62429531 AATGTGAATGGGCCTAATGGGCCATATG
1 AATGTGATTGGGCCTAATGGGCCATATG
* * * *
62429559 AAAGAGATTGGGCCTAGTAGGCCATAT
1 AATGTGATTGGGCCTAATGGGCCATAT
62429586 ATATATAGGT
Statistics
Matches: 68, Mismatches: 15, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
28 55 0.81
29 13 0.19
ACGTcount: A:0.28, C:0.17, G:0.29, T:0.26
Consensus pattern (28 bp):
AATGTGATTGGGCCTAATGGGCCATATG
Found at i:62429582 original size:56 final size:57
Alignment explanation
Indices: 62429472--62429582 Score: 136
Period size: 56 Copynumber: 2.0 Consensus size: 57
62429462 AGCATGACTG
* * * * *
62429472 TAAATGTGATTTGGGCCTAGTGGCCATATGAATGCGATTTGCGCCTAATGGGCCACA
1 TAAATGTGATATGGGCCTAATGGCCATATGAAAGAGATTTGCGCCTAATAGGCCACA
* *
62429529 TAAATGTGA-ATGGGCCTAATGGGCCATATGAAAGAGA-TTGGGCCTAGTAGGCCA
1 TAAATGTGATATGGGCCTAAT-GGCCATATGAAAGAGATTTGCGCCTAATAGGCCA
62429583 TATATATATA
Statistics
Matches: 46, Mismatches: 7, Indels: 3
0.82 0.12 0.05
Matches are distributed among these distances:
56 23 0.50
57 23 0.50
ACGTcount: A:0.28, C:0.17, G:0.30, T:0.25
Consensus pattern (57 bp):
TAAATGTGATATGGGCCTAATGGCCATATGAAAGAGATTTGCGCCTAATAGGCCACA
Found at i:62430856 original size:20 final size:20
Alignment explanation
Indices: 62430789--62430857 Score: 70
Period size: 20 Copynumber: 3.5 Consensus size: 20
62430779 ATTAACTAGA
** *
62430789 ACACATTAAATAAACTTAAG
1 ACACATTAAATGGACTCAAG
* *
62430809 ACATATTAAATGG-CTCGA-
1 ACACATTAAATGGACTCAAG
*
62430827 ACATATTAAATGGACTCAAG
1 ACACATTAAATGGACTCAAG
62430847 ACACATTAAAT
1 ACACATTAAAT
62430858 ACATAAAATA
Statistics
Matches: 40, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
18 13 0.32
19 7 0.17
20 20 0.50
ACGTcount: A:0.48, C:0.16, G:0.10, T:0.26
Consensus pattern (20 bp):
ACACATTAAATGGACTCAAG
Found at i:62443881 original size:47 final size:47
Alignment explanation
Indices: 62443803--62444402 Score: 930
Period size: 47 Copynumber: 12.6 Consensus size: 47
62443793 CCCTTCGGGA
* * * * * * *
62443803 CTTATCACATTTATACACTTTCACGTCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
62443850 CCTGTCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
62443897 CTTATCACATATATACACCTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
62443944 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
62443993 CTTATCACATATATACACTTTCACATTCATCACATCGTCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
62444040 CTTATCACATATATATACACTTTCACATTCATCACAACGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
62444089 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
62444136 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
62444183 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
62444230 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
62444277 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
62444326 TTTATCACATATATACACTTTCACATTCATCACATAGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
62444373 CTTATCACATATATATAAACTTTCACATTC
1 CTTATCAC--ATATATACACTTTCACATTC
62444403 CACATATACT
Statistics
Matches: 510, Mismatches: 35, Indels: 14
0.91 0.06 0.03
Matches are distributed among these distances:
47 358 0.70
49 152 0.30
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:62444000 original size:96 final size:94
Alignment explanation
Indices: 62443803--62444402 Score: 930
Period size: 96 Copynumber: 6.3 Consensus size: 94
62443793 CCCTTCGGGA
* * * * * * * * *
62443803 CTTATCACATTTATACACTTTCACGTCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
62443868 TTTCACATTCATCACATCGGCTATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
*
62443897 CTTATCACATATATACACCTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
* *
62443962 ACTTTCACATTCATCACATTGGCCATTCGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
*
62443993 CTTATCACATATATACACTTTCACATTCATCACATCGTCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
* *
62444058 ACTTTCACATTCATCACAACGGCCATTCGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
62444089 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
62444154 TTTCACATTCATCACATCGGCCATTCGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
*
62444183 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
62444248 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
* *
62444277 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGCTTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
62444342 ACTTTCACATTCATCACATAGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
*
62444373 CTTATCACATATATATAAACTTTCACATTC
1 CTTATCAC--ATATATACACTTTCACATTC
62444403 CACATATACT
Statistics
Matches: 478, Mismatches: 24, Indels: 6
0.94 0.05 0.01
Matches are distributed among these distances:
94 183 0.38
96 295 0.62
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.33
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGC
Found at i:62444101 original size:143 final size:141
Alignment explanation
Indices: 62443803--62444402 Score: 914
Period size: 143 Copynumber: 4.2 Consensus size: 141
62443793 CCCTTCGGGA
* * * * * * * * *
62443803 CTTATCACATTTATACACTTTCACGTCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
* * *
62443868 TTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACCTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACAAC
62443933 GGCCATTAGGC
131 GGCCATTAGGC
* *
62443944 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
62444009 ACTTTCACATTCATCACATCGTCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCA
64 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCA
*
62444074 CAACGGCCATTCGGC
127 CAACGGCCATTAGGC
62444089 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
* *
62444154 TTTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACAAC
*
62444219 GGCTATTAGGC
131 GGCCATTAGGC
62444230 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
* *
62444295 ACTTTCACATTCATCACATCGGCTATTAGGCTTTATCACATATATACACTTTCACATTCATCACA
64 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
62444360 TA-GGCCATTAGGC
129 -ACGGCCATTAGGC
*
62444373 CTTATCACATATATATAAACTTTCACATTC
1 CTTATCAC--ATATATACACTTTCACATTC
62444403 CACATATACT
Statistics
Matches: 425, Mismatches: 25, Indels: 14
0.92 0.05 0.03
Matches are distributed among these distances:
141 99 0.23
143 263 0.62
145 63 0.15
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.33
Consensus pattern (141 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACAAC
GGCCATTAGGC
Found at i:62449090 original size:10 final size:10
Alignment explanation
Indices: 62449073--62449111 Score: 60
Period size: 10 Copynumber: 3.8 Consensus size: 10
62449063 CTGTTTTATA
62449073 CATGATATGC
1 CATGATATGC
*
62449083 CATAATATGC
1 CATGATATGC
62449093 ACATGATATGC
1 -CATGATATGC
62449104 CATGATAT
1 CATGATAT
62449112 ATTCATATAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
10 17 0.65
11 9 0.35
ACGTcount: A:0.36, C:0.18, G:0.15, T:0.31
Consensus pattern (10 bp):
CATGATATGC
Found at i:62449098 original size:21 final size:21
Alignment explanation
Indices: 62449072--62449111 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
62449062 ACTGTTTTAT
62449072 ACATGATATGCCATAATATGC
1 ACATGATATGCCATAATATGC
*
62449093 ACATGATATGCCATGATAT
1 ACATGATATGCCATAATAT
62449112 ATTCATATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.38, C:0.17, G:0.15, T:0.30
Consensus pattern (21 bp):
ACATGATATGCCATAATATGC
Found at i:62449191 original size:25 final size:25
Alignment explanation
Indices: 62449157--62449226 Score: 122
Period size: 25 Copynumber: 2.8 Consensus size: 25
62449147 GAGGAAGTGC
*
62449157 AAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCA
*
62449182 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
62449207 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
62449227 ATTAAAATAG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 43 1.00
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.26
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCA
Found at i:62449250 original size:50 final size:50
Alignment explanation
Indices: 62449157--62449251 Score: 113
Period size: 50 Copynumber: 1.9 Consensus size: 50
62449147 GAGGAAGTGC
* **
62449157 AAAAGGGCTTTGCCCCAGTTTACCGAAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCGAAAAAGGCTAGGCCCCAGTTTATCA
**
62449207 AAAAGGGCTTTGCCCCAG-TTA-TTAAAATAGGCTAGGCCTCCAGTT
1 AAAAGGGCTTTGCCCCAGTTTACCGAAAA-AGGCTAGGCC-CCAGTT
62449252 ATATGATAAA
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
48 4 0.11
49 10 0.26
50 24 0.63
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.26
Consensus pattern (50 bp):
AAAAGGGCTTTGCCCCAGTTTACCGAAAAAGGCTAGGCCCCAGTTTATCA
Found at i:62454813 original size:27 final size:27
Alignment explanation
Indices: 62454782--62454959 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
62454772 TAAATTGTAC
62454782 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * ** *
62454809 TGCACTAAGTGTGCAAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
62454835 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
62454863 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
62454891 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
62454918 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
62454945 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
62454960 GACTCAATAT
Statistics
Matches: 127, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 104 0.82
28 23 0.18
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:62454923 original size:82 final size:81
Alignment explanation
Indices: 62454783--62454938 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
62454773 AAATTGTACA
* *
62454783 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCAAAATGAATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCAAAATGAATACGATGCACTAAGTGT
62454848 GCGAATTGACCATGCG
66 GCGAATTGACCATGCG
* ** *
62454864 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACTAAGT
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCAAAATGAATACGAT-GCACTAAGT
*
62454928 GTGCGAGTTGA
64 GTGCGAATTGA
62454939 TTATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 16 0.24
82 50 0.76
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCAAAATGAATACGATGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:62454950 original size:82 final size:81
Alignment explanation
Indices: 62454779--62454959 Score: 220
Period size: 82 Copynumber: 2.2 Consensus size: 81
62454769 GATTAAATTG
* *
62454779 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCAAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCAAAATGAATACGATGCACTAA
62454844 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * * ** *
62454860 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCAAAATGAATACGAT-GCACT
* **
62454924 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
62454942 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
62454960 GACTCAATAT
Statistics
Matches: 83, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
81 18 0.22
82 65 0.78
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCAAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:62460310 original size:10 final size:10
Alignment explanation
Indices: 62460293--62460331 Score: 60
Period size: 10 Copynumber: 3.8 Consensus size: 10
62460283 CTGTTTTATA
62460293 CATGATATGC
1 CATGATATGC
*
62460303 CATAATATGC
1 CATGATATGC
62460313 ACATGATATGC
1 -CATGATATGC
62460324 CATGATAT
1 CATGATAT
62460332 ATTCATATAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
10 17 0.65
11 9 0.35
ACGTcount: A:0.36, C:0.18, G:0.15, T:0.31
Consensus pattern (10 bp):
CATGATATGC
Found at i:62460318 original size:21 final size:21
Alignment explanation
Indices: 62460292--62460331 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
62460282 ACTGTTTTAT
62460292 ACATGATATGCCATAATATGC
1 ACATGATATGCCATAATATGC
*
62460313 ACATGATATGCCATGATAT
1 ACATGATATGCCATAATAT
62460332 ATTCATATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.38, C:0.17, G:0.15, T:0.30
Consensus pattern (21 bp):
ACATGATATGCCATAATATGC
Found at i:62460411 original size:25 final size:25
Alignment explanation
Indices: 62460377--62460446 Score: 122
Period size: 25 Copynumber: 2.8 Consensus size: 25
62460367 AAAGAAGTGC
*
62460377 AAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCA
*
62460402 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
62460427 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
62460447 ATTAAAAGAG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 43 1.00
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.26
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCA
Found at i:62460459 original size:24 final size:24
Alignment explanation
Indices: 62460376--62460459 Score: 116
Period size: 25 Copynumber: 3.4 Consensus size: 24
62460366 GAAAGAAGTG
*
62460376 CAAAAGGGCTTTGCCCCAGTTTAC
1 CAAAAGGGCTTTGCCCCAGTTTAT
62460400 CGAAAAGGGCTTTGCCCCAGTTTAT
1 C-AAAAGGGCTTTGCCCCAGTTTAT
62460425 CAAAAAGGGCTTTGCCCCAG-TTAT
1 C-AAAAGGGCTTTGCCCCAGTTTAT
*
62460449 TAAAAGAGGCT
1 CAAAAG-GGCT
62460460 AGGCCTCCAG
Statistics
Matches: 55, Mismatches: 3, Indels: 4
0.89 0.05 0.06
Matches are distributed among these distances:
23 5 0.09
24 9 0.16
25 41 0.75
ACGTcount: A:0.29, C:0.24, G:0.23, T:0.25
Consensus pattern (24 bp):
CAAAAGGGCTTTGCCCCAGTTTAT
Found at i:62460470 original size:50 final size:50
Alignment explanation
Indices: 62460377--62460471 Score: 122
Period size: 50 Copynumber: 1.9 Consensus size: 50
62460367 AAAGAAGTGC
**
62460377 AAAAGGGCTTTGCCCCAGTTTACCGAAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCGAAAAGGGCTAGGCCCCAGTTTATCA
**
62460427 AAAAGGGCTTTGCCCCAG-TTA-TTAAAAGAGGCTAGGCCTCCAGTT
1 AAAAGGGCTTTGCCCCAGTTTACCGAAAAG-GGCTAGGCC-CCAGTT
62460472 ATATGATAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
48 5 0.13
49 10 0.26
50 24 0.62
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.25
Consensus pattern (50 bp):
AAAAGGGCTTTGCCCCAGTTTACCGAAAAGGGCTAGGCCCCAGTTTATCA
Found at i:62460740 original size:29 final size:31
Alignment explanation
Indices: 62460667--62460741 Score: 93
Period size: 31 Copynumber: 2.5 Consensus size: 31
62460657 CATTTACAGT
* *
62460667 AAAGGCTTCGGCCCAGTGATATGAATTATGA
1 AAAGGCTTCGGCCCAGTAATATGAATTACGA
*
62460698 AAAGGCTTCGGCCCAGTAATA-G-TTTAACG-
1 AAAGGCTTCGGCCCAGTAATATGAATT-ACGA
62460727 AAAGGCTTCGGCCCA
1 AAAGGCTTCGGCCCA
62460742 ACATATCTTG
Statistics
Matches: 40, Mismatches: 3, Indels: 4
0.85 0.06 0.09
Matches are distributed among these distances:
29 17 0.43
30 3 0.08
31 20 0.50
ACGTcount: A:0.31, C:0.21, G:0.25, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAATTACGA
Found at i:62466186 original size:39 final size:40
Alignment explanation
Indices: 62466087--62466276 Score: 192
Period size: 40 Copynumber: 4.8 Consensus size: 40
62466077 GAATGATGTT
* * * *
62466087 CGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTAC-GAGTTACTAAT-TC
*
62466127 CGGACTAAGAT-CCGAAGGCATTTGTACGAGTTACTAATTC
1 CGGGCTAAG-TCCCGAAGGCATTTGTACGAGTTACTAATTC
* * *
62466167 CGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAATC
1 CGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTAATTC
* * *
62466206 CGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAAC
1 CGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTAAT-TC
* *
62466246 CGGGCTATGTCCCGAAGGCATTTGAACGAGT
1 CGGGCTAAGTCCCGAAGGCATTTGTACGAGT
62466277 AGCTATATCC
Statistics
Matches: 127, Mismatches: 17, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
39 35 0.28
40 83 0.65
41 9 0.07
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTAATTC
Found at i:62466291 original size:79 final size:79
Alignment explanation
Indices: 62466138--62466302 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
62466128 GGACTAAGAT
* **
62466138 CCGAAGGCATTTGTACGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTACGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
62466203 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * *
62466217 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTACGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
62466280 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
62466296 CCGAAGG
1 CCGAAGG
62466303 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.65
80 24 0.32
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTACGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:62469153 original size:61 final size:61
Alignment explanation
Indices: 62469029--62469154 Score: 146
Period size: 61 Copynumber: 2.1 Consensus size: 61
62469019 AACACATAAT
* * * ** *
62469029 ACAAGTCTTAAATGATGTTAATGTATTAATGTAAAGCATTAACTAAAGACACATTCAATAA
1 ACAAGTCTTAAAAGATGTTAATGTATTAATGCAAAACATTAAAGAAAGACACATTCAACAA
* ** *
62469090 ACAAGTTTTAAAAGATG-TAGATGTATTAATGCAAAACATTAAAGAAAGATGCATTTAACAA
1 ACAAGTCTTAAAAGATGTTA-ATGTATTAATGCAAAACATTAAAGAAAGACACATTCAACAA
62469151 ACAA
1 ACAA
62469155 AACACATAAT
Statistics
Matches: 54, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
60 2 0.04
61 52 0.96
ACGTcount: A:0.48, C:0.10, G:0.13, T:0.29
Consensus pattern (61 bp):
ACAAGTCTTAAAAGATGTTAATGTATTAATGCAAAACATTAAAGAAAGACACATTCAACAA
Found at i:62473924 original size:21 final size:21
Alignment explanation
Indices: 62473900--62473986 Score: 59
Period size: 21 Copynumber: 4.1 Consensus size: 21
62473890 GGGCTTGAGA
*
62473900 TGGAGGTGAACGAT-CTCGTTG
1 TGGAGGTAAAC-ATCCTCGTTG
*
62473921 TGGAGGTAAACATCCTTGTTG
1 TGGAGGTAAACATCCTCGTTG
** * ** *
62473942 TGGTTGTAAATAGGCTCATTG
1 TGGAGGTAAACATCCTCGTTG
* * *
62473963 TGGAGGTGAACGTCCTCATTG
1 TGGAGGTAAACATCCTCGTTG
62473984 TGG
1 TGG
62473987 TCTCCCCTTT
Statistics
Matches: 49, Mismatches: 16, Indels: 2
0.73 0.24 0.03
Matches are distributed among these distances:
20 2 0.04
21 47 0.96
ACGTcount: A:0.21, C:0.14, G:0.33, T:0.32
Consensus pattern (21 bp):
TGGAGGTAAACATCCTCGTTG
Found at i:62480001 original size:40 final size:40
Alignment explanation
Indices: 62479953--62480180 Score: 402
Period size: 40 Copynumber: 5.7 Consensus size: 40
62479943 GCAAACACAT
* * *
62479953 TTGCCTTCGGGTCTTAACCCGGACATATCAACTTGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
62479993 TTGCCTTCGGGTCTTAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
62480033 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
62480073 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
62480113 TTGCCTTCGGGTCTTAGCCTGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
62480153 TTGCCTTCGGGTCTTAGCCCGGATATAT
1 TTGCCTTCGGGTCTTAGCCCGGATATAT
62480181 TCCAATGCTC
Statistics
Matches: 179, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 179 1.00
ACGTcount: A:0.22, C:0.27, G:0.20, T:0.31
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
Found at i:62488662 original size:40 final size:40
Alignment explanation
Indices: 62488614--62488838 Score: 384
Period size: 40 Copynumber: 5.7 Consensus size: 40
62488604 GCAAACACAT
* * *
62488614 TTGCCTTCGGGTCTTAACCCGGACATATCAACTTGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
62488654 TTGCCTTCGGGTCTTAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
62488694 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
62488734 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
62488774 TTGCCTTC-GGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
62488813 -T-CCTTCGGGTCTTAGCCCGGATATAT
1 TTGCCTTCGGGTCTTAGCCCGGATATAT
62488839 TCCAATGCTC
Statistics
Matches: 177, Mismatches: 7, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
37 5 0.03
38 20 0.11
39 31 0.18
40 121 0.68
ACGTcount: A:0.22, C:0.28, G:0.20, T:0.31
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
Found at i:62494714 original size:43 final size:42
Alignment explanation
Indices: 62494665--62494747 Score: 114
Period size: 42 Copynumber: 2.0 Consensus size: 42
62494655 TCTTATATGT
*
62494665 AATCAAATATCGATGGC-ACTGTCCCGGACAAGGTCTTACACAA
1 AATCAAATAT-GATGGCGA-TGTCCCAGACAAGGTCTTACACAA
* *
62494708 AATCAAATATGATGTCGATGTCCCAGACATGGTCTTACAC
1 AATCAAATATGATGGCGATGTCCCAGACAAGGTCTTACAC
62494748 GTAAATCATA
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
42 25 0.69
43 11 0.31
ACGTcount: A:0.34, C:0.24, G:0.18, T:0.24
Consensus pattern (42 bp):
AATCAAATATGATGGCGATGTCCCAGACAAGGTCTTACACAA
Found at i:62494743 original size:42 final size:43
Alignment explanation
Indices: 62494665--62494790 Score: 116
Period size: 44 Copynumber: 2.9 Consensus size: 43
62494655 TCTTATATGT
*
62494665 AATCAAATATCGATGGCACTGTCCCGGACAAGGTCTTACACAA
1 AATCAAATATCGATGGCACTGTCCCAGACAAGGTCTTACACAA
* * *
62494708 AATCAAATAT-GATGTCGA-TGTCCCAGACATGGTCTTACACGTA
1 AATCAAATATCGATGGC-ACTGTCCCAGACAAGGTCTTACAC-AA
* * **
62494751 AATCATAA-GTCGATGCCAAC-GTCCCAGACGTGGTCTTACA
1 AATCA-AATATCGATGGC-ACTGTCCCAGACAAGGTCTTACA
62494791 TGAAAATACA
Statistics
Matches: 70, Mismatches: 8, Indels: 9
0.80 0.09 0.10
Matches are distributed among these distances:
42 25 0.36
43 18 0.26
44 27 0.39
ACGTcount: A:0.33, C:0.25, G:0.19, T:0.24
Consensus pattern (43 bp):
AATCAAATATCGATGGCACTGTCCCAGACAAGGTCTTACACAA
Found at i:62494754 original size:43 final size:42
Alignment explanation
Indices: 62494649--62494790 Score: 119
Period size: 43 Copynumber: 3.3 Consensus size: 42
62494639 AACCTCCAAA
* * * *
62494649 ACATGGTCTTATATGT-AATCAAATATCGATGGCACTGTCCCGG
1 ACATGGTCTTACACGTAAATCAAATAT-GATGCCA-TGTCCCAG
* * *
62494692 ACAAGGTCTTACAC-AAAATCAAATATGATGTCGATGTCCCAG
1 ACATGGTCTTACACGTAAATCAAATATGATG-CCATGTCCCAG
* *
62494734 ACATGGTCTTACACGTAAATCATAAGT-CGATGCCAACGTCCCAG
1 ACATGGTCTTACACGTAAATCA-AA-TATGATGCC-ATGTCCCAG
*
62494778 ACGTGGTCTTACA
1 ACATGGTCTTACA
62494791 TGAAAATACA
Statistics
Matches: 80, Mismatches: 13, Indels: 11
0.77 0.12 0.11
Matches are distributed among these distances:
42 24 0.30
43 29 0.36
44 26 0.32
45 1 0.01
ACGTcount: A:0.32, C:0.23, G:0.19, T:0.26
Consensus pattern (42 bp):
ACATGGTCTTACACGTAAATCAAATATGATGCCATGTCCCAG
Found at i:62498738 original size:21 final size:21
Alignment explanation
Indices: 62498712--62498763 Score: 95
Period size: 21 Copynumber: 2.5 Consensus size: 21
62498702 ATCTGTCAAC
62498712 TCTTGTAACTGAGACTTTAAT
1 TCTTGTAACTGAGACTTTAAT
62498733 TCTTGTAACTGAGACTTTAAT
1 TCTTGTAACTGAGACTTTAAT
*
62498754 TCTTTTAACT
1 TCTTGTAACT
62498764 TGGTCAGAGC
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.27, C:0.15, G:0.12, T:0.46
Consensus pattern (21 bp):
TCTTGTAACTGAGACTTTAAT
Found at i:62506180 original size:47 final size:48
Alignment explanation
Indices: 62506129--62506256 Score: 154
Period size: 46 Copynumber: 2.7 Consensus size: 48
62506119 CTATATTAAC
* * *
62506129 TAGAACACATTAAATAAACTTAAGACATATTAAATGGCTGAA-CTAAT
1 TAGAACACATTAAATAAACTTAAGACAAATTAAATGACCGAATCTAAT
* *
62506176 TAGAACACATT-AATTAACTTAAGACAAATT-AATTACCGAATCTAAT
1 TAGAACACATTAAATAAACTTAAGACAAATTAAATGACCGAATCTAAT
* * * *
62506222 TAGAACATATTAAATAGACTCAAGACACATTAAAT
1 TAGAACACATTAAATAAACTTAAGACAAATTAAAT
62506257 ACTTAAATTA
Statistics
Matches: 68, Mismatches: 10, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
45 7 0.10
46 32 0.47
47 26 0.38
48 3 0.04
ACGTcount: A:0.49, C:0.14, G:0.09, T:0.28
Consensus pattern (48 bp):
TAGAACACATTAAATAAACTTAAGACAAATTAAATGACCGAATCTAAT
Found at i:62508232 original size:15 final size:15
Alignment explanation
Indices: 62508212--62508253 Score: 50
Period size: 15 Copynumber: 2.8 Consensus size: 15
62508202 TGAGCAATTG
62508212 AAAGAAAAAGAACAA
1 AAAGAAAAAGAACAA
**
62508227 AAAG-AAAAGAGTGAA
1 AAAGAAAAAGA-ACAA
62508242 AAAGAAAAAGAA
1 AAAGAAAAAGAA
62508254 AAGAAATTTG
Statistics
Matches: 22, Mismatches: 3, Indels: 4
0.76 0.10 0.14
Matches are distributed among these distances:
14 6 0.27
15 10 0.45
16 6 0.27
ACGTcount: A:0.76, C:0.02, G:0.19, T:0.02
Consensus pattern (15 bp):
AAAGAAAAAGAACAA
Found at i:62508294 original size:26 final size:26
Alignment explanation
Indices: 62508275--62508326 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
62508265 AAAAATGAGA
* *
62508275 GAAGAAAAATAGGTTGAAAAACTAAG
1 GAAGAAAAAGAGGCTGAAAAACTAAG
*
62508301 GATGAAAAAGAGGCTGAAAAACTAAG
1 GAAGAAAAAGAGGCTGAAAAACTAAG
62508327 TGTTTATGCA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.56, C:0.06, G:0.25, T:0.13
Consensus pattern (26 bp):
GAAGAAAAAGAGGCTGAAAAACTAAG
Found at i:62520634 original size:37 final size:37
Alignment explanation
Indices: 62520575--62520720 Score: 229
Period size: 37 Copynumber: 3.9 Consensus size: 37
62520565 AGCTCAGACG
* * *
62520575 AAATCTCTACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
62520612 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* *
62520649 TAATCTCCACACGTAGTCATCGGGTCTTACCTGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* *
62520686 TAATCACCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
62520721 ATATATTTCC
Statistics
Matches: 102, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 102 1.00
ACGTcount: A:0.27, C:0.30, G:0.19, T:0.24
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:62520921 original size:48 final size:48
Alignment explanation
Indices: 62520867--62521049 Score: 330
Period size: 48 Copynumber: 3.8 Consensus size: 48
62520857 GCACATCGCC
*
62520867 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
62520915 TACATATTTCACATTAGCCATTTGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
**
62520963 TACATATTTCACATTATACATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
62521011 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
62521050 TGCATGTTCA
Statistics
Matches: 128, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 128 1.00
ACGTcount: A:0.32, C:0.26, G:0.06, T:0.36
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:62521098 original size:47 final size:47
Alignment explanation
Indices: 62521019--62521212 Score: 298
Period size: 47 Copynumber: 4.1 Consensus size: 47
62521009 CATACATATT
* * *
62521019 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * *
62521066 CCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
62521113 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * **
62521160 TCACATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
62521207 TCACAT
1 TCACAT
62521213 AAAATCCTAA
Statistics
Matches: 134, Mismatches: 13, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 134 1.00
ACGTcount: A:0.27, C:0.30, G:0.11, T:0.32
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:62521139 original size:22 final size:22
Alignment explanation
Indices: 62521112--62521183 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
62521102 GCTCACATTC
62521112 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
62521134 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
62521158 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
62521181 ATC
1 ATC
62521184 TCATATATAC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 13 0.35
23 7 0.19
24 7 0.19
25 10 0.27
ACGTcount: A:0.24, C:0.29, G:0.14, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:62526838 original size:31 final size:33
Alignment explanation
Indices: 62526781--62526845 Score: 98
Period size: 32 Copynumber: 2.0 Consensus size: 33
62526771 TTTGGGACAC
* *
62526781 AACCAATAATAGAATCAATTGGGCCT-AGCCCA
1 AACCAATAACAGAATCAAGTGGGCCTAAGCCCA
62526813 AACCAATAACAGAA-CAAGTGGGCCTAAGCCCA
1 AACCAATAACAGAATCAAGTGGGCCTAAGCCCA
62526845 A
1 A
62526846 TACAGTGACA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
31 10 0.33
32 20 0.67
ACGTcount: A:0.43, C:0.26, G:0.17, T:0.14
Consensus pattern (33 bp):
AACCAATAACAGAATCAAGTGGGCCTAAGCCCA
Found at i:62527658 original size:27 final size:27
Alignment explanation
Indices: 62527625--62527684 Score: 93
Period size: 27 Copynumber: 2.2 Consensus size: 27
62527615 CAAAATAGTC
* * *
62527625 ATTTTACCCTATAGGGGTATTTCAATA
1 ATTTTACACTACAAGGGTATTTCAATA
62527652 ATTTTACACTACAAGGGTATTTCAATA
1 ATTTTACACTACAAGGGTATTTCAATA
62527679 ATTTTA
1 ATTTTA
62527685 AAAATTGGGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.33, C:0.13, G:0.12, T:0.42
Consensus pattern (27 bp):
ATTTTACACTACAAGGGTATTTCAATA
Found at i:62527716 original size:27 final size:27
Alignment explanation
Indices: 62527666--62527802 Score: 87
Period size: 27 Copynumber: 5.1 Consensus size: 27
62527656 TACACTACAA
** *
62527666 GGGTATTTCAATAATTTTAAAAATTGG
1 GGGTATTTCGGTAATTTTACAAATTGG
* * *
62527693 GGGTATTTCGGTAATTTCACAAATCGA
1 GGGTATTTCGGTAATTTTACAAATTGG
* * * ** *
62527720 TGGTATTTTGGCAATTACACAAATTAG
1 GGGTATTTCGGTAATTTTACAAATTGG
* ** **
62527747 AGGTATTTCGAAAATTTTACAACCT-G
1 GGGTATTTCGGTAATTTTACAAATTGG
* **
62527773 AGGTATTTTAGTAATTTTACAAATTGG
1 GGGTATTTCGGTAATTTTACAAATTGG
62527800 GGG
1 GGG
62527803 GTCTTAACGA
Statistics
Matches: 81, Mismatches: 28, Indels: 2
0.73 0.25 0.02
Matches are distributed among these distances:
26 20 0.25
27 61 0.75
ACGTcount: A:0.33, C:0.09, G:0.20, T:0.37
Consensus pattern (27 bp):
GGGTATTTCGGTAATTTTACAAATTGG
Found at i:62530353 original size:4 final size:4
Alignment explanation
Indices: 62530344--62530370 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
62530334 AGGTTTGTAT
62530344 TTTA TTTA TTTA TTTA TTTA TTTA TTT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTT
62530371 TCAAATACTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (4 bp):
TTTA
Found at i:62531390 original size:29 final size:30
Alignment explanation
Indices: 62531349--62531439 Score: 120
Period size: 29 Copynumber: 3.2 Consensus size: 30
62531339 ACATGGCTTG
62531349 GAAT-TGATTTGGGCC-AGATGGGCCATAT
1 GAATGTGATTTGGGCCTAGATGGGCCATAT
*
62531377 GAATGTGATTTGGGCCTA-ATGGACCATAT
1 GAATGTGATTTGGGCCTAGATGGGCCATAT
*
62531406 GAATGAGA-TTGGGCCTAG-TGGGCCATAT
1 GAATGTGATTTGGGCCTAGATGGGCCATAT
*
62531434 GCATGT
1 GAATGT
62531440 ATGTAGACTT
Statistics
Matches: 55, Mismatches: 5, Indels: 6
0.83 0.08 0.09
Matches are distributed among these distances:
28 26 0.47
29 28 0.51
30 1 0.02
ACGTcount: A:0.25, C:0.14, G:0.32, T:0.29
Consensus pattern (30 bp):
GAATGTGATTTGGGCCTAGATGGGCCATAT
Found at i:62531765 original size:27 final size:27
Alignment explanation
Indices: 62531734--62531800 Score: 89
Period size: 27 Copynumber: 2.5 Consensus size: 27
62531724 CTAATTTGTG
* *
62531734 AAATTATCGAAATACCTTCGACCTGTA
1 AAATTACCGAAATACCCTCGACCTGTA
* *
62531761 CAATTACCGAAATACCCTCGACTTGTA
1 AAATTACCGAAATACCCTCGACCTGTA
*
62531788 AAATTACCAAAAT
1 AAATTACCGAAAT
62531801 GCCCCTAAAG
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.40, C:0.24, G:0.09, T:0.27
Consensus pattern (27 bp):
AAATTACCGAAATACCCTCGACCTGTA
Found at i:62535237 original size:67 final size:65
Alignment explanation
Indices: 62535024--62535275 Score: 221
Period size: 67 Copynumber: 3.8 Consensus size: 65
62535014 TATAATTTTG
* * * *
62535024 GCTCTCTTGTAC-ACATGGTGAACACTTAGTACCACCCATGTGACCTAGC--CAGTTTA-TCTCG
1 GCTCTCTTGT-CTACATGGTGTACACATAGTACCACCCATGCGACCTAGCTACA-TATATTCTCG
62535085 TA
64 TA
* * * * * *
62535087 GCTCTCTTGTCTACATGGTGTCCTTCACCTGGAACCACGCATGCGACCCAGCTACATATA-TCTC
1 GCTCTCTTGTCTACATGGTG---TACACATAGTACCACCCATGCGACCTAGCTACATATATTCTC
62535151 GTA
63 GTA
*
62535154 GCTCTCTTGTCTACATGGTGTACACATAGTATCACCCATGCGACCTAGCTACATCATATGTCTCG
1 GCTCTCTTGTCTACATGGTGTACACATAGTACCACCCATGCGACCTAGCTACAT-ATAT-TCTCG
62535219 TA
64 TA
* * * ** *
62535221 GCTCTCTTGTAC-ACATGATGTGCAC-TCAGCACCATACATGTGACCTAGCTACATA
1 GCTCTCTTGT-CTACATGGTGTACACAT-AGTACCACCCATGCGACCTAGCTACATA
62535276 CCATCTGTAT
Statistics
Matches: 155, Mismatches: 23, Indels: 19
0.79 0.12 0.10
Matches are distributed among these distances:
62 1 0.01
63 18 0.12
64 27 0.17
65 3 0.02
66 23 0.15
67 80 0.52
68 3 0.02
ACGTcount: A:0.24, C:0.30, G:0.17, T:0.29
Consensus pattern (65 bp):
GCTCTCTTGTCTACATGGTGTACACATAGTACCACCCATGCGACCTAGCTACATATATTCTCGTA
Found at i:62538544 original size:54 final size:54
Alignment explanation
Indices: 62538479--62538895 Score: 333
Period size: 54 Copynumber: 7.9 Consensus size: 54
62538469 TTGGTAAGAT
*
62538479 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGC
* * * * * * *
62538533 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTAATATAAGTC
1 AAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTT-CTATAAGGC
* * * * * *
62538588 AAAGG-TCCCATGTAAGACCATTCTAAGGCATGGCATTGGTGAGTTC-ATAAGAC
1 -AAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGC
* *** *
62538641 AAAGATACCATGTAAGACCATG-TTTGGAACATGGCATTTGGTAAG----AT-----
1 AAGGATACCATGTAAGACCATGCCAAGG--CATGGCA-TTGATAAGTTCTATAAGGC
* *
62538688 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGT
1 AAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGC
* * * * * *
62538742 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGAA
1 AAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTT-CTATAAGG-C
* * *
62538798 AAGG-TCCCATGTAAGACCATGCCAAGGTATGGCATTTG-TGAGTTC-ATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGGCATGGCA-TTGATAAGTTCTATAAGGC
* * * * * *
62538850 AAGGATACCACGTAAAACCATGTCAAGACATGGCAATGGTAAGTTC
1 AAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTC
62538896 AAAAAGGAAA
Statistics
Matches: 294, Mismatches: 48, Indels: 43
0.76 0.12 0.11
Matches are distributed among these distances:
45 7 0.02
46 7 0.02
47 20 0.07
48 2 0.01
49 2 0.01
52 14 0.05
53 57 0.19
54 90 0.31
55 84 0.29
56 11 0.04
ACGTcount: A:0.36, C:0.16, G:0.24, T:0.24
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGC
Found at i:62538678 original size:109 final size:108
Alignment explanation
Indices: 62538487--62538884 Score: 476
Period size: 109 Copynumber: 3.8 Consensus size: 108
62538477 ATAAGGATAT
*
62538487 CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAATCATGTAAGACC
1 CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAACCATGTAAGACC
*
62538552 ATGTCAAGACATGGCATTGATGAGTTAATATAAGTCAAAGGTCC
66 ATGTCAAGACATGGCATTGATGAGTTAATATAAG-AAAAGGTCC
* * * * * * *
62538596 CATGTAAGACCATTCTAAGGCATGGCATTGGTGAGTTC-ATAAGACAAAGATACCATGTAAGACC
1 CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAACCATGTAAGACC
*** * * *
62538660 ATGTTTGGAACATGGCATT--TG-G-TAAGATAAGGATA--T--
66 ATGTCAAG-ACATGGCATTGATGAGTTAATATAAGAAAAGGTCC
* *
62538696 CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGTAAGGAAATCATGTAAGACC
1 CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAACCATGTAAGACC
*
62538761 ATGTCAAGACATGGCATTGATGAGTTACTATAAGGAAAAGGTCC
66 ATGTCAAGACATGGCATTGATGAGTTAATATAA-GAAAAGGTCC
* * * * *
62538805 CATGTAAGACCATGCCAAGGTATGGCATTTG-TGAGTTC-ATAAGGCAAGGATACCACGTAAAAC
1 CATGTAAGACCATGCCAAGGCATGGCA-TTGATAAGTTCTATAAGGCAAGGAAACCATGTAAGAC
62538868 CATGTCAAGACATGGCA
65 CATGTCAAGACATGGCA
62538885 ATGGTAAGTT
Statistics
Matches: 240, Mismatches: 37, Indels: 25
0.79 0.12 0.08
Matches are distributed among these distances:
100 44 0.18
101 26 0.11
102 3 0.01
103 1 0.00
104 8 0.03
105 11 0.05
106 1 0.00
107 3 0.01
108 64 0.27
109 76 0.32
110 3 0.01
ACGTcount: A:0.36, C:0.16, G:0.24, T:0.24
Consensus pattern (108 bp):
CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAACCATGTAAGACC
ATGTCAAGACATGGCATTGATGAGTTAATATAAGAAAAGGTCC
Found at i:62538720 original size:100 final size:105
Alignment explanation
Indices: 62538439--62538884 Score: 448
Period size: 109 Copynumber: 4.3 Consensus size: 105
62538429 GACAAGAATG
*** *
62538439 CCATGTAAGACCATGTTTGGAACATGGCATT-TG-G-TAAGATAAGG-ATA-T-CATGTAAGACC
1 CCATGTAAGACCATGTCAAG-ACATGGCATTATGAGTTAAGATAAGGAAAAGTCCATGTAAGACC
* * *
62538498 ATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAA
65 ATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGCAAGGATA
* * * *
62538540 TCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTAATATAAGTCAAAGGTCCCATGTAAGA
1 CCATGTAAGACCATGTCAAGACATGGCATT-ATGAGTTAAGATAAG-GAAAAGT-CCATGTAAGA
* * * *
62538605 CCATTCTAAGGCATGGCATTGGTGAGTTCATAAGACAAAGATA
63 CCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGCAAGGATA
*** *
62538648 CCATGTAAGACCATGTTTGGAACATGGCATT-TG-G-TAAGATAAGG-ATA-T-CATGTAAGACC
1 CCATGTAAGACCATGTCAAG-ACATGGCATTATGAGTTAAGATAAGGAAAAGTCCATGTAAGACC
* * * *
62538707 ATGCCAAGGCATGGCATTGATAAGTTCTATAAGGTAAGGAAA
65 ATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGCAAGGATA
* **
62538749 TCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGAAAAGGTCCCATGTAAGA
1 CCATGTAAGACCATGTCAAGACATGGCATT-ATGAGTTAAGATAAGGAAAA-GT-CCATGTAAGA
* *
62538814 CCATGCCAAGGTATGGCATTTGTGAGTTCATAAGGCAAGGATA
63 CCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGCAAGGATA
* *
62538857 CCACGTAAAACCATGTCAAGACATGGCA
1 CCATGTAAGACCATGTCAAGACATGGCA
62538885 ATGGTAAGTT
Statistics
Matches: 278, Mismatches: 47, Indels: 33
0.78 0.13 0.09
Matches are distributed among these distances:
100 54 0.19
101 42 0.15
102 5 0.02
103 3 0.01
104 16 0.06
105 10 0.04
106 2 0.01
107 4 0.01
108 64 0.23
109 78 0.28
ACGTcount: A:0.36, C:0.16, G:0.24, T:0.25
Consensus pattern (105 bp):
CCATGTAAGACCATGTCAAGACATGGCATTATGAGTTAAGATAAGGAAAAGTCCATGTAAGACCA
TGCCAAGGCATGGCATTGGTGAGTTCATAAGGCAAGGATA
Found at i:62538786 original size:209 final size:209
Alignment explanation
Indices: 62538426--62538872 Score: 761
Period size: 209 Copynumber: 2.1 Consensus size: 209
62538416 ATATTGGCAC
*
62538426 TAAGAC-AAGAATGCCATGTAAGACCATGTTTGGAACATGGCATTTGGTAAGATAAGGATATCAT
1 TAAGACAAAG-ATACCATGTAAGACCATGTTTGGAACATGGCATTTGGTAAGATAAGGATATCAT
62538490 GTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAATCATGTAAGACCATG
65 GTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAATCATGTAAGACCATG
** * *
62538555 TCAAGACATGGCATTGATGAGTTAATATAAGTCAAAGGTCCCATGTAAGACCATTCTAAGGCATG
130 TCAAGACATGGCATTGATGAGTTAATATAAGGAAAAGGTCCCATGTAAGACCATGCCAAGGCATG
62538620 GCATTGGTGAGTTCA
195 GCATTGGTGAGTTCA
62538635 TAAGACAAAGATACCATGTAAGACCATGTTTGGAACATGGCATTTGGTAAGATAAGGATATCATG
1 TAAGACAAAGATACCATGTAAGACCATGTTTGGAACATGGCATTTGGTAAGATAAGGATATCATG
*
62538700 TAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGTAAGGAAATCATGTAAGACCATGT
66 TAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAATCATGTAAGACCATGT
* *
62538765 CAAGACATGGCATTGATGAGTTACTATAAGGAAAAGGTCCCATGTAAGACCATGCCAAGGTATGG
131 CAAGACATGGCATTGATGAGTTAATATAAGGAAAAGGTCCCATGTAAGACCATGCCAAGGCATGG
*
62538830 CATTTGTGAGTTCA
196 CATTGGTGAGTTCA
* * * *
62538844 TAAGGCAAGGATACCACGTAAAACCATGT
1 TAAGACAAAGATACCATGTAAGACCATGT
62538873 CAAGACATGG
Statistics
Matches: 224, Mismatches: 13, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
209 221 0.99
210 3 0.01
ACGTcount: A:0.36, C:0.15, G:0.24, T:0.25
Consensus pattern (209 bp):
TAAGACAAAGATACCATGTAAGACCATGTTTGGAACATGGCATTTGGTAAGATAAGGATATCATG
TAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAATCATGTAAGACCATGT
CAAGACATGGCATTGATGAGTTAATATAAGGAAAAGGTCCCATGTAAGACCATGCCAAGGCATGG
CATTGGTGAGTTCA
Found at i:62538830 original size:155 final size:153
Alignment explanation
Indices: 62538533--62538835 Score: 346
Period size: 155 Copynumber: 2.0 Consensus size: 153
62538523 TCTATAAGGC
* * **
62538533 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTAATATAAGTCAAAGGTCCCA
1 AAGGAAATCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTAATATAAGT-AAAGGAACCA
* *
62538598 TGTAAGACCATTCTAAGGCATGGCATTGGTGAGTTCATAAGACAAAGATACCATGTAAGACCATG
65 TGTAAGACCATTCTAAGACATGGCATTGATGAGTTCATAAGACAAAGATACCATGTAAGACCATG
***
62538663 TTTGGAACATGGCATTTGGTAAGAT
130 CAAGG-ACATGGCATTTGGTAAGAT
* * * *
62538688 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTT-CTATAAGGT-AAGGAAATC
1 AAGGAAATCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTAATATAA-GTAAAGG-AACC
* *
62538751 ATGTAAGACCATGTC-AAGACATGGCATTGATGAGTTACTATAAGGA-AAAGGTCCCATGTAAGA
64 ATGTAAGACCAT-TCTAAGACATGGCATTGATGAGTT-C-ATAA-GACAAAGATACCATGTAAGA
*
62538814 CCATGCCAAGG-TATGGCATTTG
125 CCATG-CAAGGACATGGCATTTG
62538836 TGAGTTCATA
Statistics
Matches: 125, Mismatches: 16, Indels: 14
0.81 0.10 0.09
Matches are distributed among these distances:
153 4 0.03
154 37 0.30
155 56 0.45
156 24 0.19
157 4 0.03
ACGTcount: A:0.36, C:0.15, G:0.24, T:0.25
Consensus pattern (153 bp):
AAGGAAATCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTAATATAAGTAAAGGAACCAT
GTAAGACCATTCTAAGACATGGCATTGATGAGTTCATAAGACAAAGATACCATGTAAGACCATGC
AAGGACATGGCATTTGGTAAGAT
Found at i:62555436 original size:40 final size:40
Alignment explanation
Indices: 62555388--62555593 Score: 324
Period size: 40 Copynumber: 5.2 Consensus size: 40
62555378 GGACTAAGAT
62555388 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
* *
62555428 CTGAAGGCATTTGTGCTAGTTACTATATTCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
* *
62555468 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTATGTC
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
* *
62555508 CCGAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
* * *
62555548 CCGAAGGCATTTGTGCGAGTTGCTATATCC-GGCTAAATC
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
62555587 CCGAAGG
1 CCGAAGG
62555594 TACTTGGGTT
Statistics
Matches: 153, Mismatches: 13, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
39 15 0.10
40 138 0.90
ACGTcount: A:0.22, C:0.21, G:0.27, T:0.30
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
Found at i:62559435 original size:47 final size:47
Alignment explanation
Indices: 62559371--62559672 Score: 380
Period size: 47 Copynumber: 6.4 Consensus size: 47
62559361 ATTGATGTAC
* *
62559371 AAGTATATATATGTGAT-AGG-GGAGTGGCCAATGTGATGAATGTGA
1 AAGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
62559416 AAGTATATATATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
1 AAGTATATATAT--GTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* * *
62559465 ACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
1 A-AGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* * *
62559512 ACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
1 A-AGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
** *
62559559 ACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGA
1 A-AGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* * *
62559606 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGG
1 AAGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* *
62559653 AAGTGTATAAATGTGATAAG
1 AAGTATATATATGTGATAAG
62559673 TCCCGAAGGG
Statistics
Matches: 237, Mismatches: 14, Indels: 10
0.91 0.05 0.04
Matches are distributed among these distances:
45 12 0.05
46 1 0.00
47 190 0.80
48 3 0.01
49 30 0.13
50 1 0.00
ACGTcount: A:0.33, C:0.09, G:0.31, T:0.27
Consensus pattern (47 bp):
AAGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
Found at i:62559550 original size:22 final size:22
Alignment explanation
Indices: 62559523--62559644 Score: 61
Period size: 22 Copynumber: 5.3 Consensus size: 22
62559513 CATGTGTATG
62559523 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* * *
62559545 TGTGATGAATG-TGAACAT-GCATATA
1 TGTGAT-AAGGCCG-A-ATGGC-CA-A
*
62559570 TGAGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* * ***
62559592 TGTGATGAATG-TGAAAGTGTATATA
1 TGTGAT-AAGGCCG-AA-TGGCCA-A
62559617 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
62559639 TGTGAT
1 TGTGAT
62559645 GGATGTGGAA
Statistics
Matches: 70, Mismatches: 18, Indels: 24
0.62 0.16 0.21
Matches are distributed among these distances:
22 21 0.30
23 17 0.24
24 17 0.24
25 15 0.21
ACGTcount: A:0.34, C:0.11, G:0.30, T:0.25
Consensus pattern (22 bp):
TGTGATAAGGCCGAATGGCCAA
Found at i:62562163 original size:38 final size:38
Alignment explanation
Indices: 62562099--62562173 Score: 107
Period size: 38 Copynumber: 2.0 Consensus size: 38
62562089 AATCCGAGTT
*
62562099 TAAAGACCCGCTGACTATATGAAGAGATTATGTCCGGG
1 TAAAGACCCGATGACTATATGAAGAGATTATGTCCGGG
* *
62562137 TAAAGACCCGATGGCTATGT-ACAGAGATTATGTCCGG
1 TAAAGACCCGATGACTATATGA-AGAGATTATGTCCGG
62562174 ATTAAAATTC
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
37 1 0.03
38 32 0.97
ACGTcount: A:0.31, C:0.19, G:0.27, T:0.24
Consensus pattern (38 bp):
TAAAGACCCGATGACTATATGAAGAGATTATGTCCGGG
Found at i:62562286 original size:40 final size:40
Alignment explanation
Indices: 62562227--62562546 Score: 491
Period size: 40 Copynumber: 8.1 Consensus size: 40
62562217 AGGTCTCGAC
62562227 GATG-ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
*
62562266 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
*
62562306 GATGTA-CCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
62562345 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
*
62562385 GATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* *
62562425 GATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* * ** *
62562465 GATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCTGGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* * * * *
62562505 GTTATATCCGGGCTAGGTCCCGAAGAGCAATCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
62562545 GA
1 GA
62562547 CGTGTATTCG
Statistics
Matches: 257, Mismatches: 22, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
39 43 0.17
40 214 0.83
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
Found at i:62565941 original size:47 final size:47
Alignment explanation
Indices: 62565910--62566341 Score: 494
Period size: 47 Copynumber: 8.9 Consensus size: 47
62565900 TAGGGTTGAG
*
62565910 TGGCCAATGTGATGAATGTGAAAGTATATATATGCGTGATAAGGCCGAA
1 TGGCCAATGTGATGAATGTGAAAGTGTATATAT--GTGATAAGGCCGAA
* * * * *
62565959 TGGCCAATGTGATGAATGTGAACA-TGTGTATGTGTGATAGGGACGAG
1 TGGCCAATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCGAA
*
62566006 TGGCCAATGTGATGAATGTGAAAGTATATATATGCGTGATAAGGCCGAA
1 TGGCCAATGTGATGAATGTGAAAGTGTATATAT--GTGATAAGGCCGAA
* *
62566055 TGGCCAATGTGATGAATGTGAACA-TGTGTATGTGTGATAAGGCCGAA
1 TGGCCAATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCGAA
* *
62566102 TGGCCAATGTGATGAATGTGTGATGAATGTGAACATGTGTATGTGTGATAAGGCCGAA
1 TGGCCAATGTGATGAA--TGTGA--AA---G----TGTATATATGTGATAAGGCCGAA
* *
62566160 TGGCCAATGTGATGAATGTGAACA-TGTGTATGTGTGATAAGGCCGAA
1 TGGCCAATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCGAA
* *
62566207 TGGCCAATGTGATGAATGTGAACA-TGCATATATGAGATAAGGCCGAA
1 TGGCCAATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCGAA
62566254 TGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAA
1 TGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAA
* * * *
62566301 TGGCCAATGTGATGGATGTGGAAGTGTGTAAATGTGATAAG
1 TGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAG
62566342 TCCCGAAGGG
Statistics
Matches: 339, Mismatches: 25, Indels: 40
0.84 0.06 0.10
Matches are distributed among these distances:
46 2 0.01
47 215 0.63
49 72 0.21
50 3 0.01
51 1 0.00
54 1 0.00
55 1 0.00
56 5 0.01
58 39 0.12
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.27
Consensus pattern (47 bp):
TGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAA
Found at i:62566055 original size:96 final size:96
Alignment explanation
Indices: 62565910--62566325 Score: 588
Period size: 96 Copynumber: 4.3 Consensus size: 96
62565900 TAGGGTTGAG
62565910 TGGCCAATGTGATGAATGTGAAAGTATATATATGCGTGATAAGGCCGAATGGCCAATGTGATGAA
1 TGGCCAATGTGATGAATGTGAAAGTATATATATGCGTGATAAGGCCGAATGGCCAATGTGATGAA
* * *
62565975 TGTGAACATGTGTATGTGTGATAGGGACGAG
66 TGTGAACATGTGTATGTGTGATAAGGCCGAA
62566006 TGGCCAATGTGATGAATGTGAAAGTATATATATGCGTGATAAGGCCGAATGGCCAATGTGATGAA
1 TGGCCAATGTGATGAATGTGAAAGTATATATATGCGTGATAAGGCCGAATGGCCAATGTGATGAA
62566071 TGTGAACATGTGTATGTGTGATAAGGCCGAA
66 TGTGAACATGTGTATGTGTGATAAGGCCGAA
* * *
62566102 TGGCCAATGTGATGAATGTGTGATGAATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAA
1 TGGCCAATGTGATGAA--TGTGA--AA-GT----ATATATATGCGTGATAAGGCCGAATGGCCAA
62566167 TGTGATGAATGTGAACATGTGTATGTGTGATAAGGCCGAA
57 TGTGATGAATGTGAACATGTGTATGTGTGATAAGGCCGAA
** *
62566207 TGGCCAATGTGATGAATGTGAACA-TGCATATAT--GAGATAAGGCCGAATGGCCAATGTGATGA
1 TGGCCAATGTGATGAATGTGAA-AGTATATATATGCGTGATAAGGCCGAATGGCCAATGTGATGA
* *
62566269 ATGTGAA-AGTGTATATATGTGATAAGGCCGAA
65 ATGTGAACA-TGTGTATGTGTGATAAGGCCGAA
* *
62566301 TGGCCAATGTGATGGATGTGGAAGT
1 TGGCCAATGTGATGAATGTGAAAGT
62566326 GTGTAAATGT
Statistics
Matches: 293, Mismatches: 15, Indels: 26
0.88 0.04 0.08
Matches are distributed among these distances:
93 2 0.01
94 77 0.26
96 113 0.39
98 5 0.02
100 3 0.01
101 3 0.01
102 1 0.00
103 5 0.02
105 84 0.29
ACGTcount: A:0.31, C:0.10, G:0.31, T:0.27
Consensus pattern (96 bp):
TGGCCAATGTGATGAATGTGAAAGTATATATATGCGTGATAAGGCCGAATGGCCAATGTGATGAA
TGTGAACATGTGTATGTGTGATAAGGCCGAA
Found at i:62566120 original size:105 final size:102
Alignment explanation
Indices: 62566011--62566320 Score: 406
Period size: 105 Copynumber: 3.1 Consensus size: 102
62566001 ACGAGTGGCC
62566011 AATGTGATGAATGTGAAAGTATATATATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
1 AATGTGATGAATGTG-AAG-ATATATATG-GTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
62566076 ACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
63 ACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
* * *
62566116 AATGTGTGATGAATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
1 AA--TGTGATGAATGTGAAGATATATATG-GTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
62566181 ACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
63 ACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
* *
62566221 AATGTGA--ACA--T---G-CATATAT-GAGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-
1 AATGTGATGA-ATGTGAAGATATATATGGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAC
* *
62566276 AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
65 A-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
*
62566315 GATGTG
1 AATGTG
62566321 GAAGTGTGTA
Statistics
Matches: 189, Mismatches: 12, Indels: 19
0.86 0.05 0.09
Matches are distributed among these distances:
93 1 0.01
94 75 0.40
96 4 0.02
100 1 0.01
101 1 0.01
102 1 0.01
103 5 0.03
105 86 0.46
106 2 0.01
107 13 0.07
ACGTcount: A:0.32, C:0.10, G:0.31, T:0.27
Consensus pattern (102 bp):
AATGTGATGAATGTGAAGATATATATGGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:62566121 original size:33 final size:33
Alignment explanation
Indices: 62566084--62566179 Score: 102
Period size: 33 Copynumber: 3.2 Consensus size: 33
62566074 GAACATGTGT
62566084 ATGTGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGTGATAAGGCCGAATGGCCAATGTGATGA
* *
62566117 ATGTGTGATGAATG-TGAA----C-ATGTG-T--
1 ATGTGTGAT-AAGGCCGAATGGCCAATGTGATGA
62566142 ATGTGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGTGATAAGGCCGAATGGCCAATGTGATGA
62566175 ATGTG
1 ATGTG
62566180 AACATGTGTA
Statistics
Matches: 49, Mismatches: 4, Indels: 20
0.67 0.05 0.27
Matches are distributed among these distances:
24 3 0.06
25 12 0.24
27 1 0.02
28 5 0.10
29 2 0.04
30 5 0.10
31 1 0.02
33 17 0.35
34 3 0.06
ACGTcount: A:0.29, C:0.09, G:0.33, T:0.28
Consensus pattern (33 bp):
ATGTGTGATAAGGCCGAATGGCCAATGTGATGA
Found at i:62566124 original size:58 final size:58
Alignment explanation
Indices: 62566062--62566179 Score: 236
Period size: 58 Copynumber: 2.0 Consensus size: 58
62566052 GAATGGCCAA
62566062 TGTGATGAATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATG
1 TGTGATGAATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATG
62566120 TGTGATGAATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATG
1 TGTGATGAATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATG
62566178 TG
1 TG
62566180 AACATGTGTA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
58 60 1.00
ACGTcount: A:0.29, C:0.08, G:0.33, T:0.30
Consensus pattern (58 bp):
TGTGATGAATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATG
Found at i:62566146 original size:25 final size:25
Alignment explanation
Indices: 62566117--62566197 Score: 73
Period size: 25 Copynumber: 3.4 Consensus size: 25
62566107 AATGTGATGA
62566117 ATGTGTGATGAATGTGAACATGTGT
1 ATGTGTGATGAATGTGAACATGTGT
* * *
62566142 ATGTGTGAT-AAGGCCG-A-ATG-GCC
1 ATGTGTGATGAATG-TGAACATGTG-T
*
62566165 A-ATGTGATGAATGTGAACATGTGT
1 ATGTGTGATGAATGTGAACATGTGT
62566189 ATGTGTGAT
1 ATGTGTGAT
62566198 AAGGCCGAAT
Statistics
Matches: 41, Mismatches: 8, Indels: 14
0.65 0.13 0.22
Matches are distributed among these distances:
22 8 0.20
23 8 0.20
24 8 0.20
25 17 0.41
ACGTcount: A:0.28, C:0.07, G:0.32, T:0.32
Consensus pattern (25 bp):
ATGTGTGATGAATGTGAACATGTGT
Found at i:62566219 original size:22 final size:22
Alignment explanation
Indices: 62566192--62566313 Score: 61
Period size: 22 Copynumber: 5.3 Consensus size: 22
62566182 CATGTGTATG
62566192 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* * *
62566214 TGTGATGAATG-TGAACAT-GCATATA
1 TGTGAT-AAGGCCG-A-ATGGC-CA-A
*
62566239 TGAGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* * ***
62566261 TGTGATGAATG-TGAAAGTGTATATA
1 TGTGAT-AAGGCCG-AA-TGGCCA-A
62566286 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
62566308 TGTGAT
1 TGTGAT
62566314 GGATGTGGAA
Statistics
Matches: 70, Mismatches: 18, Indels: 24
0.62 0.16 0.21
Matches are distributed among these distances:
22 21 0.30
23 17 0.24
24 17 0.24
25 15 0.21
ACGTcount: A:0.34, C:0.11, G:0.30, T:0.25
Consensus pattern (22 bp):
TGTGATAAGGCCGAATGGCCAA
Found at i:62566249 original size:152 final size:154
Alignment explanation
Indices: 62565966--62566273 Score: 503
Period size: 152 Copynumber: 2.0 Consensus size: 154
62565956 GAATGGCCAA
* * *
62565966 TGTGATGAATGTGAACATGTGTATGTGTGATAGGGACGAGTGGCCAATGTGATGAATGTGAAAGT
1 TGTGATGAATGTGAACATGTGTATGTGTGATAAGGACGAATGGCCAATGTGATGAATGTGAAAGC
** * *
62566031 ATATATATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTATGTGTGATAAG
66 ATATATATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGAGATAAG
62566096 GCCGAATGGCCAATGTGATGAATG
131 GCCGAATGGCCAATGTGATGAATG
*
62566120 TGTGATGAATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTG-AA-C
1 TGTGATGAATGTGAACATGTGTATGTGTGATAAGGACGAATGGCCAATGTGATGAATGTGAAAGC
* * *
62566183 ATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGAGATAAG
66 ATATATATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGAGATAAG
62566248 GCCGAATGGCCAATGTGATGAATG
131 GCCGAATGGCCAATGTGATGAATG
62566272 TG
1 TG
62566274 AAAGTGTATA
Statistics
Matches: 143, Mismatches: 11, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
152 84 0.59
153 2 0.01
154 57 0.40
ACGTcount: A:0.31, C:0.10, G:0.32, T:0.28
Consensus pattern (154 bp):
TGTGATGAATGTGAACATGTGTATGTGTGATAAGGACGAATGGCCAATGTGATGAATGTGAAAGC
ATATATATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGAGATAAG
GCCGAATGGCCAATGTGATGAATG
Found at i:62580964 original size:23 final size:23
Alignment explanation
Indices: 62580845--62580992 Score: 185
Period size: 22 Copynumber: 6.5 Consensus size: 23
62580835 GAGTCATGGT
* *
62580845 CAGTAAGCTCTTCATGAGTTGATAA
1 CAGTAAGCTC-TAATGAGCTGA-AA
* *
62580870 CAGTAAGCACTATTGAGCT-AAA
1 CAGTAAGCTCTAATGAGCTGAAA
* *
62580892 CGGTAAGCTCCAATGAGCTG-AA
1 CAGTAAGCTCTAATGAGCTGAAA
*
62580914 CAGTAAGCTCTATTGAGCTG-AA
1 CAGTAAGCTCTAATGAGCTGAAA
62580936 CAGTAAGCTCTAATGAGCTGAAA
1 CAGTAAGCTCTAATGAGCTGAAA
62580959 CAGTAAGCTCTAATGAGCTGAAA
1 CAGTAAGCTCTAATGAGCTGAAA
*
62580982 TAGTAAGCTCT
1 CAGTAAGCTCT
62580993 TACGAGCTAT
Statistics
Matches: 108, Mismatches: 13, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
22 57 0.53
23 36 0.33
24 6 0.06
25 9 0.08
ACGTcount: A:0.35, C:0.18, G:0.22, T:0.25
Consensus pattern (23 bp):
CAGTAAGCTCTAATGAGCTGAAA
Found at i:62586211 original size:34 final size:35
Alignment explanation
Indices: 62586155--62586239 Score: 118
Period size: 34 Copynumber: 2.5 Consensus size: 35
62586145 GAGAATACAT
62586155 TCTGGGCCTAAGCCCATATTAGTAACAGT-AACAG
1 TCTGGGCCTAAGCCCATATTAGTAACAGTAAACAG
* * * *
62586189 TCTGGGCCTTAGCCTATTTTAGTATCAGTAAACAG
1 TCTGGGCCTAAGCCCATATTAGTAACAGTAAACAG
*
62586224 TCTAGGCCTAAGCCCA
1 TCTGGGCCTAAGCCCA
62586240 CCTCAATACA
Statistics
Matches: 43, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
34 25 0.58
35 18 0.42
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.27
Consensus pattern (35 bp):
TCTGGGCCTAAGCCCATATTAGTAACAGTAAACAG
Found at i:62587079 original size:45 final size:45
Alignment explanation
Indices: 62586987--62587150 Score: 226
Period size: 45 Copynumber: 3.7 Consensus size: 45
62586977 CACCGGCATT
* * *
62586987 TAGCCTGCTAGGCTCGAA-GCCCG-ATA-TCATTTCACCAGTATTA
1 TAGCCTGCTAGGCTCAAAGGCCCGAATAGT-ATTTCACCAGCATCA
* * *
62587030 TAGCCTGTTAGGCTCGAAGGCCCGAATAGTATCTCACCAGCATCA
1 TAGCCTGCTAGGCTCAAAGGCCCGAATAGTATTTCACCAGCATCA
* *
62587075 TAGCCTGCTAGGCTCAAAAGCCCGAATAGTATTTCACCGGCATCA
1 TAGCCTGCTAGGCTCAAAGGCCCGAATAGTATTTCACCAGCATCA
62587120 TAGCCTGCTAGGCTCAAAGGCCCGAATAGTA
1 TAGCCTGCTAGGCTCAAAGGCCCGAATAGTA
62587151 CTGTATGATA
Statistics
Matches: 108, Mismatches: 10, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
43 17 0.16
44 5 0.05
45 85 0.79
46 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.23
Consensus pattern (45 bp):
TAGCCTGCTAGGCTCAAAGGCCCGAATAGTATTTCACCAGCATCA
Found at i:62595811 original size:16 final size:15
Alignment explanation
Indices: 62595773--62595811 Score: 60
Period size: 15 Copynumber: 2.5 Consensus size: 15
62595763 TGGATTCTCG
*
62595773 TATCATGGATTTCTT
1 TATCTTGGATTTCTT
62595788 TATCTTGGATTTCTT
1 TATCTTGGATTTCTT
62595803 TATTCTTGG
1 TA-TCTTGG
62595812 CTTCTCTGTT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
15 16 0.73
16 6 0.27
ACGTcount: A:0.15, C:0.13, G:0.15, T:0.56
Consensus pattern (15 bp):
TATCTTGGATTTCTT
Found at i:62598164 original size:49 final size:50
Alignment explanation
Indices: 62598094--62598305 Score: 248
Period size: 49 Copynumber: 4.3 Consensus size: 50
62598084 AGCTATTGTG
* *
62598094 AGGTCACTTGTGTAGTACTAAGTGCAAGCTACTACGTGTACCAGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * * * *
62598144 -GTTCGCATGTGTACTACTAAGTGCAGGCTACTATGCGTACCTGATAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TT
* * * * **
62598194 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* *
62598244 AGGTCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
*
62598294 -GGTCGCATGTGT
1 AGGTCACATGTGT
62598306 TGTAACACCC
Statistics
Matches: 134, Mismatches: 26, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
49 49 0.37
50 48 0.36
51 37 0.28
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.31
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:62598265 original size:50 final size:50
Alignment explanation
Indices: 62598094--62598297 Score: 250
Period size: 50 Copynumber: 4.1 Consensus size: 50
62598084 AGCTATTGTG
* *
62598094 AGGTCACTTGTGTAGTACTAAGTGCAAGCTACTACGTGTACCAGATAATT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * * * * *
62598144 -GTTCGCATGTGTACTACTAAGTGCAGGCTACTATGCGTACCTGATAACTT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TT
* * * **
62598194 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
*
62598244 AGGTCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATAATT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
62598294 -GGTC
1 AGGTC
62598298 GCATGTGTTG
Statistics
Matches: 128, Mismatches: 24, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
49 43 0.34
50 48 0.38
51 37 0.29
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (50 bp):
AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:62599717 original size:37 final size:37
Alignment explanation
Indices: 62599667--62599745 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
62599657 TTATTACGAA
* * *
62599667 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
62599704 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
62599741 GTCTT
1 GTCTT
62599746 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:62599986 original size:47 final size:47
Alignment explanation
Indices: 62599863--62600105 Score: 326
Period size: 47 Copynumber: 5.1 Consensus size: 47
62599853 CCCTTCGGGA
* * * * * *
62599863 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCAGCC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCA-TTAGGC
* *
62599911 CTGTCA-CATATATATACACTTCCACATTCATCACATCGGCCATTAGGC
1 CT-T-ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
62599959 CTTATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
62600006 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
62600055 CCTATCACGTATATACACTTTCACATTCATCACACCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
62600102 CTTA
1 CTTA
62600106 CTATCATTTC
Statistics
Matches: 174, Mismatches: 16, Indels: 11
0.87 0.08 0.05
Matches are distributed among these distances:
46 1 0.01
47 88 0.51
48 8 0.05
49 76 0.44
50 1 0.01
ACGTcount: A:0.28, C:0.32, G:0.09, T:0.31
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:62600027 original size:96 final size:96
Alignment explanation
Indices: 62599863--62600105 Score: 371
Period size: 96 Copynumber: 2.5 Consensus size: 96
62599853 CCCTTCGGGA
* * * * * * * *
62599863 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCA-GCCCTGTCACATATATATA
1 CTTATCACGTATATACACTTTCACATTCATCACATCGGCCA-TTAGGCCTTATCACATATATATA
62599927 CACTTCCACATTCATCACATCGGCCATTAGGC
65 CACTTCCACATTCATCACATCGGCCATTAGGC
62599959 CTTATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
*
62600024 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTCCACATTCATCACATCGGCCATTAGGC
* *
62600055 CCTATCACGTATATACACTTTCACATTCATCACACCGGCCATTAGGCCTTA
1 CTTATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
62600106 CTATCATTTC
Statistics
Matches: 135, Mismatches: 11, Indels: 2
0.91 0.07 0.01
Matches are distributed among these distances:
95 2 0.01
96 133 0.99
ACGTcount: A:0.28, C:0.32, G:0.09, T:0.31
Consensus pattern (96 bp):
CTTATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
ACTTCCACATTCATCACATCGGCCATTAGGC
Found at i:62609012 original size:47 final size:47
Alignment explanation
Indices: 62608955--62609258 Score: 425
Period size: 47 Copynumber: 6.4 Consensus size: 47
62608945 ATTGATGTAC
* * *
62608955 AAGTATATATATGTGATAGGGCCGAGTGGCCAATGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
*
62609002 AAGTATATATATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
1 AAGTGTATATAT--GTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* *
62609051 ACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
1 A-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* *
62609098 ACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
1 A-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* *
62609145 ACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGA
1 A-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* *
62609192 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGG
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
*
62609239 AAGTGTATAAATGTGATAAG
1 AAGTGTATATATGTGATAAG
62609259 TCCCGAAGGG
Statistics
Matches: 239, Mismatches: 14, Indels: 8
0.92 0.05 0.03
Matches are distributed among these distances:
46 1 0.00
47 197 0.82
49 40 0.17
50 1 0.00
ACGTcount: A:0.33, C:0.10, G:0.31, T:0.27
Consensus pattern (47 bp):
AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
Found at i:62609136 original size:22 final size:22
Alignment explanation
Indices: 62609109--62609230 Score: 61
Period size: 22 Copynumber: 5.3 Consensus size: 22
62609099 CATGTGTATG
62609109 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* * *
62609131 TGTGATGAATG-TGAACAT-GCATATA
1 TGTGAT-AAGGCCG-A-ATGGC-CA-A
*
62609156 TGAGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* * ***
62609178 TGTGATGAATG-TGAAAGTGTATATA
1 TGTGAT-AAGGCCG-AA-TGGCCA-A
62609203 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
62609225 TGTGAT
1 TGTGAT
62609231 GGATGTGGAA
Statistics
Matches: 70, Mismatches: 18, Indels: 24
0.62 0.16 0.21
Matches are distributed among these distances:
22 21 0.30
23 17 0.24
24 17 0.24
25 15 0.21
ACGTcount: A:0.34, C:0.11, G:0.30, T:0.25
Consensus pattern (22 bp):
TGTGATAAGGCCGAATGGCCAA
Found at i:62611400 original size:45 final size:45
Alignment explanation
Indices: 62611308--62611513 Score: 272
Period size: 45 Copynumber: 4.6 Consensus size: 45
62611298 CGGTATTTAT
* * * * *
62611308 CCTGCTAAGCTCGAA-GCCCG-ATATTATTTCACCAGAATTATAG
1 CCTGCTAGGCTCAAAGGCCCGAATAGTATTTCACCAGCATCATAG
* * * *
62611351 CCTGCTAGACTCGAAGGCCCGAATAGTATCTCACCGGCATCATAG
1 CCTGCTAGGCTCAAAGGCCCGAATAGTATTTCACCAGCATCATAG
*
62611396 CCTGCTAGGCTCAAAGGCCCGAATAGTGTTTCACCAGCATCATAG
1 CCTGCTAGGCTCAAAGGCCCGAATAGTATTTCACCAGCATCATAG
* * * *
62611441 CCTGCTAGGCTCAAGGGCCCGAATAGTATTTCGCCTGCGTCATAG
1 CCTGCTAGGCTCAAAGGCCCGAATAGTATTTCACCAGCATCATAG
62611486 CCTGCTAGGCTCAAAGGCCCGAATAGTA
1 CCTGCTAGGCTCAAAGGCCCGAATAGTA
62611514 CTGTACGATA
Statistics
Matches: 143, Mismatches: 18, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
43 13 0.09
44 5 0.03
45 125 0.87
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (45 bp):
CCTGCTAGGCTCAAAGGCCCGAATAGTATTTCACCAGCATCATAG
Found at i:62615385 original size:27 final size:27
Alignment explanation
Indices: 62615355--62615437 Score: 87
Period size: 27 Copynumber: 3.0 Consensus size: 27
62615345 CTTATAGAAA
* **
62615355 TATTTCGGTCAATTTACTCTATGGGGG
1 TATTTCGGTCAATTTACCCTATAAGGG
62615382 TATTTCGGTC-ATTTCACCCTATAAGGG
1 TATTTCGGTCAATTT-ACCCTATAAGGG
* * *
62615409 TATTTCGATCATTTTACCCGATTAAGGG
1 TATTTCGGTCAATTTACCCTA-TAAGGG
62615437 T
1 T
62615438 CTAGGTACGC
Statistics
Matches: 47, Mismatches: 6, Indels: 5
0.81 0.10 0.09
Matches are distributed among these distances:
26 4 0.09
27 33 0.70
28 10 0.21
ACGTcount: A:0.22, C:0.18, G:0.20, T:0.40
Consensus pattern (27 bp):
TATTTCGGTCAATTTACCCTATAAGGG
Found at i:62618214 original size:27 final size:26
Alignment explanation
Indices: 62618170--62618221 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
62618160 CTCGCTGCAA
*
62618170 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
62618197 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
62618222 GCAACCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:62618298 original size:27 final size:26
Alignment explanation
Indices: 62618260--62618319 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
62618250 CCACATATAT
*
62618260 ATATTTGTTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGGCCTAGCCACA
* * *
62618286 ATATCTGTATCTGGTGGCTTCGTCACA
1 ATATCTGT-TCTGGTGGCCTAGCCACA
62618313 ATATCTG
1 ATATCTG
62618320 GTAGCCTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 7 0.24
27 22 0.76
ACGTcount: A:0.20, C:0.22, G:0.22, T:0.37
Consensus pattern (26 bp):
ATATCTGTTCTGGTGGCCTAGCCACA
Done.