Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 193 of 349
Found at i:62623647 original size:29 final size:29
Alignment explanation
Indices: 62623614--62623715 Score: 125
Period size: 29 Copynumber: 3.6 Consensus size: 29
62623604 TGAATCTGAC
**
62623614 TGGGCCTAGCGGGCCATATAAATGTGATT
1 TGGGCCTAATGGGCCATATAAATGTGATT
* *
62623643 TGGGCCTAATGGGCCATATACAGGTGATT
1 TGGGCCTAATGGGCCATATAAATGTGATT
* *
62623672 TGGGCCTAATGGGCCATATGAATATGA-T
1 TGGGCCTAATGGGCCATATAAATGTGATT
* *
62623700 TAGGCTTAATGGGCCA
1 TGGGCCTAATGGGCCA
62623716 GATACAGGTA
Statistics
Matches: 63, Mismatches: 10, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
28 15 0.24
29 48 0.76
ACGTcount: A:0.25, C:0.17, G:0.30, T:0.27
Consensus pattern (29 bp):
TGGGCCTAATGGGCCATATAAATGTGATT
Found at i:62623686 original size:58 final size:57
Alignment explanation
Indices: 62623614--62623724 Score: 150
Period size: 57 Copynumber: 1.9 Consensus size: 57
62623604 TGAATCTGAC
* * * *
62623614 TGGGCCTAGCGGGCCATATAAATGTGATTTGGGCCTAATGGGCCATATACAGGTGATT
1 TGGGCCTAACGGGCCATATAAATATGA-TTAGGCCTAATGGGCCAGATACAGGTGATT
* * *
62623672 TGGGCCTAATGGGCCATATGAATATGATTAGGCTTAATGGGCCAGATACAGGT
1 TGGGCCTAACGGGCCATATAAATATGATTAGGCCTAATGGGCCAGATACAGGT
62623725 ATGTGATTTT
Statistics
Matches: 46, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
57 23 0.50
58 23 0.50
ACGTcount: A:0.26, C:0.16, G:0.31, T:0.27
Consensus pattern (57 bp):
TGGGCCTAACGGGCCATATAAATATGATTAGGCCTAATGGGCCAGATACAGGTGATT
Found at i:62628206 original size:28 final size:29
Alignment explanation
Indices: 62628139--62628211 Score: 76
Period size: 29 Copynumber: 2.6 Consensus size: 29
62628129 TGAATGTGAC
* * * *
62628139 TGGGCCTAACGGGCCATATAAATGTGATT
1 TGGGCATAATGGGCCATATAAATATGAGT
* *
62628168 TGGGCAAAATGGGCCATATGAATATG-GT
1 TGGGCATAATGGGCCATATAAATATGAGT
*
62628196 TGGGCTTAATGGGCCA
1 TGGGCATAATGGGCCA
62628212 GATACAAGTA
Statistics
Matches: 36, Mismatches: 8, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
28 15 0.42
29 21 0.58
ACGTcount: A:0.27, C:0.15, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGGCATAATGGGCCATATAAATATGAGT
Found at i:62630497 original size:764 final size:759
Alignment explanation
Indices: 62629027--62630540 Score: 2401
Period size: 764 Copynumber: 2.0 Consensus size: 759
62629017 TTTTTTTTAA
*
62629027 GCATTTAAGTTTTTATTTCTTTTTAAGTGTGTTCAGATCAGATTGTAATAAGGTTTTCAGTATGT
1 GCATTTAAGTTTTTATTTCTTGTTAAGTGTGTTCAGATCAGATTGTAATAAGGTTTTCAGTATGT
*
62629092 TATTATTACTTGAATTATTATTATTATTTACGAGAAGTTGAACATGGATTTTTTAAATTATAGTA
66 TATTATTACTTGAATTATTATTATTATTTACGAGAAGTTGAACATGGATTTCTTAAATTATAGTA
* ** *
62629157 TGTTTCCTACGTTTTTGCAACTAAGTTTTTTTTTTAAAATCAAATGTTTTAAACAAGGCTTTCGT
131 TGTTTCCTACATTTCCGCAACTAAG-TTTTTTTTTAAAATCAAATGTTTTAAACAAGGCTTTCAT
* * *
62629222 AATTGAAAGTTTTTTTTTCATTAATTAAGGTTTCTCATTTTAAGATGGGTTTTCAATGAAAACAA
195 AACTGAAAGATTTTTTTTCATTAATTAAGGTTTCTCATTTTAAGAAGGGTTTTCAATGAAAACAA
* *
62629287 GGTTTTCGCTAAAACACTTCAATGCGACACAGCAGATTCGGCCATAACGTCTGAGCCAGGTTTGG
260 GGTTTGCACTAAAACACTTCAATGCGACACAGCAGATTCGGCCATAACGTCTGAGCCAGGTTTGG
* * * *
62629352 GGTGTTATATTTAGTGGTATCAGAGCCCATGTTGCAAAACATGGGCTGTGAAGTGGGCCTTATTA
325 AGTGTTACATTTAGTGGTATCAGAGCCCAGGTTGCAAAACACGGGCTGTGAAGTGGGCCTTATTA
* *
62629417 CTTGATTTCTTTTTGTGTTTTAAAAAAAATTACAATGATTCGGAAAAGGGGAAGTCTTGTTGAGC
390 CTTGATTTCTTTTTGTGTTTTAAAAAAAATTACAATGATTCGGAAAAGGGGAAGTCTTGCTGAAC
* * *
62629482 GGCACACTGAGTCTCCGACGTCGAACCAAGTAAGTACTTTTATTCTTAAATTTTTTTAAATTGTT
455 GGCACACCGAGACTCCGACGTCGAACCAAGTAAGTACTTTTATTCTTAAATTTGTTTAAATTGTT
* * * *
62629547 ATACAGTTGATAGTTAGAGGGCTACTTTAGATGATATTGTTAGAGTGGAACCGAAGCCCGTAGGA
520 ATACAGTAGATAGTTACAAGGCTACTTTAGATGATATTGTTAGAGTGAAACCGAAGCCCGTAGGA
*
62629612 TCTTGAAACTGTAGAGGATTTTCGAAAACAATCTTCTCTTAAATTACTTCCATAAAACATCGGGT
585 TCTTGAAACTGTAGAGAATTTTCGAAAACAATCTTCTCTTAAATTACTTCCATAAAACATCGGGT
* * *
62629677 TAATTATTGAACTAACTAAAACTTCATAAAATTTTTAATCTAGAAAATATGAGAATCGACGCTGA
650 TAATTATTGAACTAACTAAAACATCATAAAATTTTTAATCTAGAAAATACGAGAATCGACGATGA
* *
62629742 GTGCTAGAAGAGGTGCAGGAGGCCGTGGCTGAGGCTGCAGGAGGT
715 GTGCGAGAAGAGGTGCAGGAGGCCGTGGATGAGGCTGCAGGAGGT
*
62629787 GCATTTAAGTTTTTATTTCTTGTTAAGTGTGTTCAGATCAGATTGTAATAAGGTTTTCATTATGT
1 GCATTTAAGTTTTTATTTCTTGTTAAGTGTGTTCAGATCAGATTGTAATAAGGTTTTCAGTATGT
62629852 TATTATTACTTGAATTATTATTATTATTTTTTACGAGAAGTTGAACATGGATTTCTTAAATTATA
66 TATTATTACTTGAATTATTATTATTA---TTTACGAGAAGTTGAACATGGATTTCTTAAATTATA
* * *
62629917 GTGTGTTTGCC-ACATTTCCGCAACTAAG-TTTTTTTTAAATATTAAATGTTTTAAACGAGGCTT
128 GTATGTTT-CCTACATTTCCGCAACTAAGTTTTTTTTTAAA-ATCAAATGTTTTAAACAAGGCTT
62629980 TCATAACTGAAAGATTTTTTTT-AGTTAATTAAGGTTTCTCATTTTAAGAAGGGTTTTCAATGAA
191 TCATAACTGAAAGATTTTTTTTCA-TTAATTAAGGTTTCTCATTTTAAGAAGGGTTTTCAATGAA
* * * * * *
62630044 AATAATGTTTGCACTAAAATACTTCAATGTGACACA-CAAGATTCGGCCATAACGTCTGAGTCGG
255 AACAAGGTTTGCACTAAAACACTTCAATGCGACACAGC-AGATTCGGCCATAACGTCTGAGCCAG
* * * **
62630108 GTTTGGAGTGTTACATTTAGTGGTATCAGAGTCTAGGTTGCGAAATGCGGGCTGTGAAGTGGGCC
319 GTTTGGAGTGTTACATTTAGTGGTATCAGAGCCCAGGTTGCAAAACACGGGCTGTGAAGTGGGCC
* *
62630173 TTATTACTTGATTTCTTTTTGTGTTTTAAAAAAATTTTACAATGATTTGGAAAAAGGGGAAGTCT
384 TTATTACTTGATTTCTTTTTGTGTTTTAAAAAAA-ATTACAATGATTCGG-AAAAGGGGAAGTCT
* * *
62630238 TGCTGAACGGCACACCGAGACTCTGATGTCGAACCAAGTAAGTATTTTTATTCTTAAATTTGTTT
447 TGCTGAACGGCACACCGAGACTCCGACGTCGAACCAAGTAAGTACTTTTATTCTTAAATTTGTTT
**
62630303 AAATTGTTATACAGTAGATAGTTACAAGGCTACTTTAGATGAT-TTGGTTAGAGTGAAATTGAAG
512 AAATTGTTATACAGTAGATAGTTACAAGGCTACTTTAGATGATATT-GTTAGAGTGAAACCGAAG
*
62630367 CCCGTAGGATCTTGAAACTGTAGAGAATTTTC-AGAAACAATCTTCTCTTAAATTACTTTCATAA
576 CCCGTAGGATCTTGAAACTGTAGAGAATTTTCGA-AAACAATCTTCTCTTAAATTACTTCCATAA
62630431 AACATCGGGTTAATTATTGAACTAACTAAAACATCATAAAATTTTTAATCTAGAAAATACGAGAA
640 AACATCGGGTTAATTATTGAACTAACTAAAACATCATAAAATTTTTAATCTAGAAAATACGAGAA
62630496 TCGACGATGAGTGCGAGAAGAGGTGCAGGAGGCCGTGGATGAGGC
705 TCGACGATGAGTGCGAGAAGAGGTGCAGGAGGCCGTGGATGAGGC
62630541 CGCCGGAGTG
Statistics
Matches: 690, Mismatches: 53, Indels: 18
0.91 0.07 0.02
Matches are distributed among these distances:
760 89 0.13
761 13 0.02
762 223 0.32
763 72 0.10
764 293 0.42
ACGTcount: A:0.31, C:0.13, G:0.20, T:0.37
Consensus pattern (759 bp):
GCATTTAAGTTTTTATTTCTTGTTAAGTGTGTTCAGATCAGATTGTAATAAGGTTTTCAGTATGT
TATTATTACTTGAATTATTATTATTATTTACGAGAAGTTGAACATGGATTTCTTAAATTATAGTA
TGTTTCCTACATTTCCGCAACTAAGTTTTTTTTTAAAATCAAATGTTTTAAACAAGGCTTTCATA
ACTGAAAGATTTTTTTTCATTAATTAAGGTTTCTCATTTTAAGAAGGGTTTTCAATGAAAACAAG
GTTTGCACTAAAACACTTCAATGCGACACAGCAGATTCGGCCATAACGTCTGAGCCAGGTTTGGA
GTGTTACATTTAGTGGTATCAGAGCCCAGGTTGCAAAACACGGGCTGTGAAGTGGGCCTTATTAC
TTGATTTCTTTTTGTGTTTTAAAAAAAATTACAATGATTCGGAAAAGGGGAAGTCTTGCTGAACG
GCACACCGAGACTCCGACGTCGAACCAAGTAAGTACTTTTATTCTTAAATTTGTTTAAATTGTTA
TACAGTAGATAGTTACAAGGCTACTTTAGATGATATTGTTAGAGTGAAACCGAAGCCCGTAGGAT
CTTGAAACTGTAGAGAATTTTCGAAAACAATCTTCTCTTAAATTACTTCCATAAAACATCGGGTT
AATTATTGAACTAACTAAAACATCATAAAATTTTTAATCTAGAAAATACGAGAATCGACGATGAG
TGCGAGAAGAGGTGCAGGAGGCCGTGGATGAGGCTGCAGGAGGT
Found at i:62636381 original size:27 final size:28
Alignment explanation
Indices: 62636297--62636394 Score: 135
Period size: 27 Copynumber: 3.5 Consensus size: 28
62636287 CATGAGATTG
* * * *
62636297 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
62636326 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
62636354 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
62636381 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
62636395 GACTTAATAT
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 24 0.38
28 22 0.34
29 18 0.28
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:62636405 original size:27 final size:27
Alignment explanation
Indices: 62636325--62636407 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
62636315 TAAATTGTAC
* *
62636325 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
62636353 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
62636380 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
62636407 A
1 A
62636408 TTTTTGAATC
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 30 0.60
28 20 0.40
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:62636408 original size:29 final size:27
Alignment explanation
Indices: 62636297--62636408 Score: 98
Period size: 28 Copynumber: 4.0 Consensus size: 27
62636287 CATGAGATTG
** * *
62636297 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGC-GACTT-AATTATATA
* *
62636326 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGA-CTTAATTATATA
* *
62636354 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGACTTAATTATATA
*
62636381 GCACTGAGTGTGCGGACTTAATATATAT
1 GCACTAAGTGTGC-GACTTAAT-TATAT
62636409 TTTTGAATCA
Statistics
Matches: 72, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
27 23 0.32
28 28 0.39
29 21 0.29
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (27 bp):
GCACTAAGTGTGCGACTTAATTATATA
Found at i:62644588 original size:24 final size:25
Alignment explanation
Indices: 62644540--62644592 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 25
62644530 GTTTTTGGTC
62644540 ATTTTTTTTTCTTATTGTTTGTTCT
1 ATTTTTTTTTCTTATTGTTTGTTCT
* * *
62644565 ATTTTTTTTT-TTTTTTTTTTTTCT
1 ATTTTTTTTTCTTATTGTTTGTTCT
62644589 ATTT
1 ATTT
62644593 ATTATGTTCT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
24 15 0.60
25 10 0.40
ACGTcount: A:0.08, C:0.06, G:0.04, T:0.83
Consensus pattern (25 bp):
ATTTTTTTTTCTTATTGTTTGTTCT
Found at i:62648222 original size:36 final size:35
Alignment explanation
Indices: 62648144--62648245 Score: 91
Period size: 37 Copynumber: 2.8 Consensus size: 35
62648134 ATTTTAACAT
* * *
62648144 TCATTAATATGAGTTTATTATTGTCATAATTGACA
1 TCATTAATAAGAGTTTATTATAGTCATAATTGAAA
*
62648179 TAAATTAATTAAGAGTTT-TTATAGTCATAACTTGAAA
1 T-CATTAA-TAAGAGTTTATTATAGTCATAA-TTGAAA
*
62648216 TCATTAAAATAAAAGTTTAATTAT-GTCATA
1 TCATT--AATAAGAGTTT-ATTATAGTCATA
62648246 GTTTGACTCT
Statistics
Matches: 54, Mismatches: 6, Indels: 11
0.76 0.08 0.15
Matches are distributed among these distances:
35 1 0.02
36 19 0.35
37 22 0.41
38 8 0.15
39 4 0.07
ACGTcount: A:0.41, C:0.07, G:0.10, T:0.42
Consensus pattern (35 bp):
TCATTAATAAGAGTTTATTATAGTCATAATTGAAA
Found at i:62650390 original size:28 final size:28
Alignment explanation
Indices: 62650357--62650454 Score: 117
Period size: 28 Copynumber: 3.5 Consensus size: 28
62650347 TTAAGTCTTT
*
62650357 GCACACTCAGTGCTATATAATC-AACTCC
1 GCACACTTAGTGCTATATAATCAAACT-C
62650385 GCACACTTAGTGCTTATATAATCAAACTC
1 GCACACTTAGTGC-TATATAATCAAACTC
* * * * *
62650414 GCACACTTAGTGCTGTACATTTAAACCC
1 GCACACTTAGTGCTATATAATCAAACTC
62650442 GCACACTTAGTGC
1 GCACACTTAGTGC
62650455 CAATCTCATG
Statistics
Matches: 62, Mismatches: 6, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
28 35 0.56
29 23 0.37
30 4 0.06
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.28
Consensus pattern (28 bp):
GCACACTTAGTGCTATATAATCAAACTC
Found at i:62655452 original size:27 final size:27
Alignment explanation
Indices: 62655399--62655569 Score: 202
Period size: 27 Copynumber: 6.4 Consensus size: 27
62655389 TGGATAAGTT
*
62655399 GTAGAATTATCGAAAT-CCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
*
62655425 GTAGAATTACCGAAATTCCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
**
62655452 GTAGAATTATTGAAATA-CCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* * *
62655478 GTAGAATTACAGAAATACCCTTATAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* * *
62655505 GTAGAAATACCGAAATAACCCTATAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* * *
62655532 GTAGAATTACCGAGATACCCTTGTGGG
1 GTAGAATTACCGAAATACCCCTGTAGG
*
62655559 GTAAAATTACC
1 GTAGAATTACC
62655570 ATTTTGCCCC
Statistics
Matches: 124, Mismatches: 19, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
26 39 0.31
27 85 0.69
ACGTcount: A:0.35, C:0.18, G:0.22, T:0.26
Consensus pattern (27 bp):
GTAGAATTACCGAAATACCCCTGTAGG
Found at i:62655473 original size:53 final size:53
Alignment explanation
Indices: 62655399--62655567 Score: 221
Period size: 53 Copynumber: 3.2 Consensus size: 53
62655389 TGGATAAGTT
* * *
62655399 GTAGAATTATCGAAATCCCCTGTAGGGTAGAATTACCGAAATTCCCCTGTAGG
1 GTAGAATTATCGAAATACCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGG
* * *
62655452 GTAGAATTATTGAAATACCCTGTAGGGTAGAATTACAGAAATACCCTTATAGG
1 GTAGAATTATCGAAATACCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGG
* * * * *
62655505 GTAGAAATACCGAAATAACCCTATAGGGTAGAATTACCGAGATACCCTTGTGGG
1 GTAGAATTATCGAAAT-ACCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGG
*
62655559 GTAAAATTA
1 GTAGAATTA
62655568 CCATTTTGCC
Statistics
Matches: 99, Mismatches: 16, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
53 60 0.61
54 39 0.39
ACGTcount: A:0.36, C:0.17, G:0.22, T:0.26
Consensus pattern (53 bp):
GTAGAATTATCGAAATACCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGG
Found at i:62660809 original size:31 final size:31
Alignment explanation
Indices: 62660766--62660844 Score: 140
Period size: 31 Copynumber: 2.5 Consensus size: 31
62660756 TTAAACGATT
*
62660766 ACTGGGCTGAAGCCTTTTCATAATTCATATC
1 ACTGGGCCGAAGCCTTTTCATAATTCATATC
*
62660797 ACTGGGCCGAAGCCTTTTCATTATTCATATC
1 ACTGGGCCGAAGCCTTTTCATAATTCATATC
62660828 ACTGGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
62660845 ACTGTAAACA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 46 1.00
ACGTcount: A:0.23, C:0.25, G:0.19, T:0.33
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTTTCATAATTCATATC
Found at i:62661187 original size:11 final size:11
Alignment explanation
Indices: 62661156--62661203 Score: 57
Period size: 11 Copynumber: 4.6 Consensus size: 11
62661146 ATATGAATAC
62661156 ATCATGTGCAT
1 ATCATGTGCAT
*
62661167 ATCA--TACAT
1 ATCATGTGCAT
62661176 ATCATGTGCAT
1 ATCATGTGCAT
*
62661187 ATCATGT-CAA
1 ATCATGTGCAT
62661197 ATCATGT
1 ATCATGT
62661204 ACATCAAAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
9 8 0.25
10 9 0.28
11 15 0.47
ACGTcount: A:0.33, C:0.19, G:0.12, T:0.35
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:62671090 original size:19 final size:19
Alignment explanation
Indices: 62671054--62671092 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
62671044 TTTTCATCAT
* *
62671054 AGTAAAATAAAATAATAAA
1 AGTAAAACAAAACAATAAA
*
62671073 AGTAAAACAAAACCATAAA
1 AGTAAAACAAAACAATAAA
62671092 A
1 A
62671093 ATAATTAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.72, C:0.08, G:0.05, T:0.15
Consensus pattern (19 bp):
AGTAAAACAAAACAATAAA
Found at i:62671607 original size:27 final size:27
Alignment explanation
Indices: 62671556--62671645 Score: 110
Period size: 27 Copynumber: 3.2 Consensus size: 27
62671546 GTGACAGAGT
62671556 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATA-TTTGTGGCAGTGC
* * *
62671585 CACCAGAACAAATATATGTGGCAGGGC
1 CACCAGAACAGATATTTGTGGCAGTGC
62671612 CACCAGAACAGATAATTTGTGGCA-TAGC
1 CACCAGAACAGAT-ATTTGTGGCAGT-GC
62671640 CACCAG
1 CACCAG
62671646 GACGCTTCCT
Statistics
Matches: 53, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
27 23 0.43
28 23 0.43
29 7 0.13
ACGTcount: A:0.33, C:0.23, G:0.23, T:0.20
Consensus pattern (27 bp):
CACCAGAACAGATATTTGTGGCAGTGC
Found at i:62671797 original size:28 final size:28
Alignment explanation
Indices: 62671750--62671842 Score: 152
Period size: 28 Copynumber: 3.3 Consensus size: 28
62671740 AAATTAACCC
*
62671750 TAGGGGTATAGA-GGTCATTTTGCATACA
1 TAGGGGTATA-ATGGTAATTTTGCATACA
62671778 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAATGGTAATTTTGCATACA
*
62671806 TAGGAGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAATGGTAATTTTGCATACA
62671834 TAGGGGTAT
1 TAGGGGTAT
62671843 TTTAGTACAT
Statistics
Matches: 61, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
27 1 0.02
28 60 0.98
ACGTcount: A:0.31, C:0.08, G:0.27, T:0.34
Consensus pattern (28 bp):
TAGGGGTATAATGGTAATTTTGCATACA
Found at i:62672111 original size:16 final size:15
Alignment explanation
Indices: 62672090--62672121 Score: 55
Period size: 16 Copynumber: 2.1 Consensus size: 15
62672080 CAAAAATACC
62672090 GGCTTTTCGGCATTTT
1 GGCTTTTCGGC-TTTT
62672106 GGCTTTTCGGCTTTT
1 GGCTTTTCGGCTTTT
62672121 G
1 G
62672122 CCGATCTAGC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 5 0.31
16 11 0.69
ACGTcount: A:0.03, C:0.19, G:0.28, T:0.50
Consensus pattern (15 bp):
GGCTTTTCGGCTTTT
Found at i:62682043 original size:85 final size:85
Alignment explanation
Indices: 62681900--62682062 Score: 213
Period size: 85 Copynumber: 1.9 Consensus size: 85
62681890 CACAAACAAG
* * * *
62681900 TACAATGCCGATGTCCCTGACTTGGTCTTACAAGTAATTCAATATCGATGCTTCTGTCCCAGACA
1 TACAATGCCAATGTCCCAGACATGGTCTTACAAGTAATTCAATATCGAGGCTTCTGTCCCAGACA
**
62681965 GGGTCTTACACGAAATTAGA
66 CAGTCTTACACGAAATTAGA
* * *
62681985 TACAATGCCAATGTCCCAGACATGGTCTTATACGTAAATATC-A-ATCGAGGCTTGTGTCCCAGA
1 TACAATGCCAATGTCCCAGACATGGTCTTACAAGT-AAT-TCAATATCGAGGCTTCTGTCCCAGA
62682048 CACAGTCTTACACGA
64 CACAGTCTTACACGA
62682063 TATCTCAGAT
Statistics
Matches: 67, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
85 61 0.91
86 4 0.06
87 2 0.03
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.28
Consensus pattern (85 bp):
TACAATGCCAATGTCCCAGACATGGTCTTACAAGTAATTCAATATCGAGGCTTCTGTCCCAGACA
CAGTCTTACACGAAATTAGA
Found at i:62685117 original size:21 final size:21
Alignment explanation
Indices: 62685067--62685106 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
62685057 AGTTACATGG
62685067 CCTA-TTCACACGGTCGTGTC
1 CCTACTTCACACGGTCGTGTC
62685087 CCTACTTCACACAGGT-GTGT
1 CCTACTTCACAC-GGTCGTGT
62685107 GCCTCTGTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 4 0.22
21 11 0.61
22 3 0.17
ACGTcount: A:0.17, C:0.33, G:0.20, T:0.30
Consensus pattern (21 bp):
CCTACTTCACACGGTCGTGTC
Found at i:62692117 original size:6 final size:6
Alignment explanation
Indices: 62692087--62692149 Score: 58
Period size: 6 Copynumber: 10.3 Consensus size: 6
62692077 AAGAAACATT
* * *
62692087 ATCAGA A-CTAGA ATCAAA ATGAGA ATCAGA ATCAGA ATCAG- GTGACAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA
62692136 ATCAGA ATCAGA AT
1 ATCAGA ATCAGA AT
62692150 TAGGTGACAG
Statistics
Matches: 46, Mismatches: 6, Indels: 10
0.74 0.10 0.16
Matches are distributed among these distances:
5 2 0.04
6 39 0.85
7 4 0.09
8 1 0.02
ACGTcount: A:0.49, C:0.14, G:0.19, T:0.17
Consensus pattern (6 bp):
ATCAGA
Found at i:62692141 original size:25 final size:25
Alignment explanation
Indices: 62692108--62692177 Score: 113
Period size: 25 Copynumber: 2.8 Consensus size: 25
62692098 AATCAAAATG
62692108 AGAATCAGAATCAGAATCAGGTGAC
1 AGAATCAGAATCAGAATCAGGTGAC
*
62692133 AGAATCAGAATCAGAATTAGGTGAC
1 AGAATCAGAATCAGAATCAGGTGAC
* *
62692158 AGAATTAGAGTCAGAATCAG
1 AGAATCAGAATCAGAATCAG
62692178 TATCAGGTAA
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 41 1.00
ACGTcount: A:0.44, C:0.13, G:0.24, T:0.19
Consensus pattern (25 bp):
AGAATCAGAATCAGAATCAGGTGAC
Found at i:62692145 original size:31 final size:30
Alignment explanation
Indices: 62692108--62692205 Score: 98
Period size: 31 Copynumber: 3.4 Consensus size: 30
62692098 AATCAAAATG
62692108 AGAATCAGAATCAGAATCAGGTGACAGAATC
1 AGAATCAGAATCAG-ATCAGGTGACAGAATC
*
62692139 AGAATCAGAAT----T-AGGTGACAGAATT
1 AGAATCAGAATCAGATCAGGTGACAGAATC
* *
62692164 AGAGTCAGAATCAGTATCAGGTAACAGAATC
1 AGAATCAGAATCAG-ATCAGGTGACAGAATC
* *
62692195 AAAATTAGAAT
1 AGAATCAGAAT
62692206 GTGAATGCAA
Statistics
Matches: 54, Mismatches: 7, Indels: 12
0.74 0.10 0.16
Matches are distributed among these distances:
25 22 0.41
26 1 0.02
30 1 0.02
31 30 0.56
ACGTcount: A:0.46, C:0.12, G:0.21, T:0.20
Consensus pattern (30 bp):
AGAATCAGAATCAGATCAGGTGACAGAATC
Found at i:62692642 original size:27 final size:27
Alignment explanation
Indices: 62692612--62692804 Score: 203
Period size: 27 Copynumber: 7.2 Consensus size: 27
62692602 AACACCCTAG
* *
62692612 GGGTAAAATGGTAATTTTGTAAATCAA
1 GGGTAAAATAGTAATTTTGTAAATCGA
** * *
62692639 GGGTAAAACGGTAATTCTGTAGAA-CAA
1 GGGTAAAATAGTAATTTTGTA-AATCGA
* * *
62692666 GGGTAAAATAATAATTTTATAAATTGA
1 GGGTAAAATAGTAATTTTGTAAATCGA
**
62692693 GGGTAAAACGGTAATTTTGTAAATCGA
1 GGGTAAAATAGTAATTTTGTAAATCGA
*
62692720 GGGTAAAATAGTAATTTTATAAATCGA
1 GGGTAAAATAGTAATTTTGTAAATCGA
*
62692747 GGGTAAAATAGTAATTCTGT--ATCGA
1 GGGTAAAATAGTAATTTTGTAAATCGA
* * *
62692772 GGGTAAAACAGTAATTTTTGTAATTTGA
1 GGGTAAAATAGTAA-TTTTGTAAATCGA
62692800 GGGTA
1 GGGTA
62692805 CTTTGATAAT
Statistics
Matches: 138, Mismatches: 23, Indels: 9
0.81 0.14 0.05
Matches are distributed among these distances:
25 18 0.13
26 7 0.05
27 103 0.75
28 10 0.07
ACGTcount: A:0.40, C:0.05, G:0.23, T:0.32
Consensus pattern (27 bp):
GGGTAAAATAGTAATTTTGTAAATCGA
Found at i:62692670 original size:54 final size:54
Alignment explanation
Indices: 62692612--62692789 Score: 227
Period size: 54 Copynumber: 3.3 Consensus size: 54
62692602 AACACCCTAG
* * *
62692612 GGGTAAAATGGTAATTTTGTAAATCAAGGGTAAAACGGTAATTCTGTAGAA-CAA
1 GGGTAAAATAGTAATTTTATAAATCGAGGGTAAAACGGTAATTCTGTA-AATCAA
* * * *
62692666 GGGTAAAATAATAATTTTATAAATTGAGGGTAAAACGGTAATTTTGTAAATCGA
1 GGGTAAAATAGTAATTTTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCAA
** *
62692720 GGGTAAAATAGTAATTTTATAAATCGAGGGTAAAATAGTAATTCTGT--ATCGA
1 GGGTAAAATAGTAATTTTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCAA
*
62692772 GGGTAAAACAGTAATTTT
1 GGGTAAAATAGTAATTTT
62692790 TGTAATTTGA
Statistics
Matches: 110, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
52 22 0.20
53 2 0.02
54 86 0.78
ACGTcount: A:0.41, C:0.06, G:0.22, T:0.31
Consensus pattern (54 bp):
GGGTAAAATAGTAATTTTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCAA
Found at i:62692868 original size:54 final size:53
Alignment explanation
Indices: 62692797--62692950 Score: 168
Period size: 54 Copynumber: 2.9 Consensus size: 53
62692787 TTTTGTAATT
** *
62692797 TGAGGGTACTTTGATAATTTTACATGTCGAGGGTATTTCAGTAATTTTGCAAA
1 TGAGGGTACTTTGATAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAA
* ** *
62692850 CTGAGGGTA-TTTCGATAATTTTACAAATCGAGGATATTTGGGTAATTTTATAAA
1 -TGAGGGTACTTT-GATAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAA
* * * *
62692904 TCGGGGGTACTTTGGTAATTTTACAACT-GGGGGTATTTCAGTAATTT
1 T-GAGGGTACTTTGATAATTTTACAAATCGAGGGTATTTCAGTAATTT
62692951 GGTAAACTAA
Statistics
Matches: 83, Mismatches: 14, Indels: 7
0.80 0.13 0.07
Matches are distributed among these distances:
53 19 0.23
54 61 0.73
55 3 0.04
ACGTcount: A:0.28, C:0.09, G:0.23, T:0.40
Consensus pattern (53 bp):
TGAGGGTACTTTGATAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAA
Found at i:62692947 original size:26 final size:27
Alignment explanation
Indices: 62692798--62692950 Score: 127
Period size: 27 Copynumber: 5.7 Consensus size: 27
62692788 TTTGTAATTT
* **
62692798 GAGGGTACTTTGA-TAATTTTACATGTC
1 GAGGGTA-TTTCAGTAATTTTACAAATC
*
62692825 GAGGGTATTTCAGTAATTTTGCAAA-C
1 GAGGGTATTTCAGTAATTTTACAAATC
62692851 TGAGGGTATTTC-GATAATTTTACAAATC
1 -GAGGGTATTTCAG-TAATTTTACAAATC
* ** *
62692879 GAGGATATTTGGGTAATTTTATAAATC
1 GAGGGTATTTCAGTAATTTTACAAATC
* * *
62692906 GGGGGTACTTT-GGTAATTTTACAACT-
1 GAGGGTA-TTTCAGTAATTTTACAAATC
*
62692932 GGGGGTATTTCAGTAATTT
1 GAGGGTATTTCAGTAATTT
62692951 GGTAAACTAA
Statistics
Matches: 106, Mismatches: 13, Indels: 15
0.79 0.10 0.11
Matches are distributed among these distances:
25 3 0.03
26 20 0.19
27 78 0.74
28 5 0.05
ACGTcount: A:0.28, C:0.09, G:0.24, T:0.39
Consensus pattern (27 bp):
GAGGGTATTTCAGTAATTTTACAAATC
Found at i:62701469 original size:49 final size:49
Alignment explanation
Indices: 62701289--62701482 Score: 198
Period size: 50 Copynumber: 3.9 Consensus size: 49
62701279 TCTATTGTGA
* *
62701289 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTA-TTCGTACCCGAAAACTG-T
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTACGT-GTA-CC--AGACTGTT
* * * ** *
62701340 GATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATTAGA-TGGTGA
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACT-GT-T
*
62701390 GGTC-AAGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTT
1 GGTCGCA-TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTT
* *
62701439 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGA
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA
62701483 TAGCTTCGGC
Statistics
Matches: 119, Mismatches: 17, Indels: 16
0.78 0.11 0.11
Matches are distributed among these distances:
47 1 0.01
48 3 0.03
49 39 0.33
50 41 0.34
51 34 0.29
52 1 0.01
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (49 bp):
GGTCGCATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTT
Found at i:62704507 original size:15 final size:15
Alignment explanation
Indices: 62704484--62704558 Score: 73
Period size: 15 Copynumber: 5.0 Consensus size: 15
62704474 GTATCGTATC
*
62704484 TTGGGTTTC-TTATTT
1 TTGGATTTCTTTA-TT
62704499 TTGGATTTCTTTATT
1 TTGGATTTCTTTATT
*
62704514 CTGGATTTCTTTATT
1 TTGGATTTCTTTATT
* * *
62704529 CTGGGTTT-TTCTATC
1 TTGGATTTCTT-TATT
62704544 TTGGATTTCTTTATT
1 TTGGATTTCTTTATT
62704559 CGGTTTTCTT
Statistics
Matches: 50, Mismatches: 7, Indels: 6
0.79 0.11 0.10
Matches are distributed among these distances:
14 2 0.04
15 43 0.86
16 5 0.10
ACGTcount: A:0.11, C:0.11, G:0.16, T:0.63
Consensus pattern (15 bp):
TTGGATTTCTTTATT
Found at i:62715334 original size:13 final size:13
Alignment explanation
Indices: 62715316--62715354 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
62715306 ATATTATAAT
*
62715316 TATTTTGTGTTAA
1 TATTTTATGTTAA
*
62715329 TATTTTATGCTAA
1 TATTTTATGTTAA
62715342 TAATTTTATGTTA
1 T-ATTTTATGTTA
62715355 CAAAATGAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
13 12 0.55
14 10 0.45
ACGTcount: A:0.28, C:0.03, G:0.10, T:0.59
Consensus pattern (13 bp):
TATTTTATGTTAA
Found at i:62717095 original size:40 final size:40
Alignment explanation
Indices: 62717040--62717261 Score: 329
Period size: 40 Copynumber: 5.6 Consensus size: 40
62717030 TATTCGAATG
*
62717040 ATATCGGGGCTAAGTCCCGAAGGCATTTGTGCTAGTAACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTAACT
* *
62717080 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTAACT
*
62717120 ATATCCGGGCTAAGTCCCAAAGGCATTTGTGCTAGTAACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTAACT
* * *
62717160 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTAACT
* * **
62717200 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTAACT
*
62717240 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
62717262 TACTTGGGTT
Statistics
Matches: 164, Mismatches: 18, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
39 14 0.09
40 150 0.91
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTAACT
Found at i:62717173 original size:80 final size:80
Alignment explanation
Indices: 62717040--62717261 Score: 365
Period size: 80 Copynumber: 2.8 Consensus size: 80
62717030 TATTCGAATG
*
62717040 ATATCGGGGCTAAGTCCCGAAGGCATTTGTGCTAGTAACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTAACTATATCCGGGCTAAGTCCCGAAGGCA
62717105 TTTGTGCTATTGACT
66 TTTGTGCTATTGACT
* *
62717120 ATATCCGGGCTAAGTCCCAAAGGCATTTGTGCTAGTAACTATATCCGGGCTAAGTCCCGAAGGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTAACTATATCCGGGCTAAGTCCCGAAGGCA
62717185 TTTGTGCTATTGACT
66 TTTGTGCTATTGACT
* * ** *
62717200 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTAACTATATCCGGGCTAAGTCCCGAAGG
62717262 TACTTGGGTT
Statistics
Matches: 133, Mismatches: 9, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
79 15 0.11
80 118 0.89
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.27
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTAACTATATCCGGGCTAAGTCCCGAAGGCA
TTTGTGCTATTGACT
Found at i:62721607 original size:28 final size:28
Alignment explanation
Indices: 62721550--62721613 Score: 83
Period size: 28 Copynumber: 2.3 Consensus size: 28
62721540 TGGGAAATAG
* * *
62721550 TTGGGCCTGATGGGCCATATGAATGTGA
1 TTGGGCCTGATGGACCATATGAACGAGA
*
62721578 TTGGGCCTGATGGACCATGTGAACGAGA
1 TTGGGCCTGATGGACCATATGAACGAGA
*
62721606 TTCGGCCT
1 TTGGGCCT
62721614 AAAGGGGCCA
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.20, C:0.19, G:0.34, T:0.27
Consensus pattern (28 bp):
TTGGGCCTGATGGACCATATGAACGAGA
Found at i:62721991 original size:43 final size:43
Alignment explanation
Indices: 62721930--62722012 Score: 121
Period size: 43 Copynumber: 1.9 Consensus size: 43
62721920 TAATAAAGAG
* * * *
62721930 AAATTACCGAAATACCCCCGGTTTGTAAAATTATCGAAGTGTA
1 AAATTACCAAAATACCCCCAGTTTGGAAAATTAACGAAGTGTA
*
62721973 AAATTATCAAAATACCCCCAGTTTGGAAAATTAACGAAGT
1 AAATTACCAAAATACCCCCAGTTTGGAAAATTAACGAAGT
62722013 ACCCCCAATT
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 35 1.00
ACGTcount: A:0.41, C:0.18, G:0.14, T:0.27
Consensus pattern (43 bp):
AAATTACCAAAATACCCCCAGTTTGGAAAATTAACGAAGTGTA
Found at i:62722003 original size:27 final size:27
Alignment explanation
Indices: 62721969--62722232 Score: 245
Period size: 27 Copynumber: 9.8 Consensus size: 27
62721959 ATTATCGAAG
62721969 TGTAAAATTATCAAAATACCCCCAGTT
1 TGTAAAATTATCAAAATACCCCCAGTT
* * * * *
62721996 TGGAAAATTAACGAAGTACCCCCAATT
1 TGTAAAATTATCAAAATACCCCCAGTT
*
62722023 TGTAAAATTA-CTAAATTACCCCCAGTT
1 TGTAAAATTATC-AAAATACCCCCAGTT
* * *
62722050 TGTAAAATTACCGAAATA-CCCCTGATT
1 TGTAAAATTATCAAAATACCCCCAG-TT
* *
62722077 TGTAAAATTA-CTGAAATACCCTC-GATT
1 TGTAAAATTATC-AAAATACCCCCAG-TT
* *
62722104 TGTGAAATTATCAAATTACCCCCAGTT
1 TGTAAAATTATCAAAATACCCCCAGTT
* *
62722131 TGTAAAATTATCGAAATACCCCCAATT
1 TGTAAAATTATCAAAATACCCCCAGTT
*
62722158 TGTAAAATTAT-AGAAATACCCTC-GATT
1 TGTAAAATTATCA-AAATACCCCCAG-TT
* * *
62722185 TGTAAAATTATCGAAATACCCTC-GACT
1 TGTAAAATTATCAAAATACCCCCAG-TT
62722212 TGTAAAATTATCAAAATACCC
1 TGTAAAATTATCAAAATACCC
62722233 TTGTAGTGTA
Statistics
Matches: 200, Mismatches: 27, Indels: 20
0.81 0.11 0.08
Matches are distributed among these distances:
26 7 0.04
27 187 0.94
28 6 0.03
ACGTcount: A:0.39, C:0.21, G:0.10, T:0.30
Consensus pattern (27 bp):
TGTAAAATTATCAAAATACCCCCAGTT
Found at i:62722105 original size:81 final size:80
Alignment explanation
Indices: 62721969--62722232 Score: 313
Period size: 81 Copynumber: 3.3 Consensus size: 80
62721959 ATTATCGAAG
* * * * * *
62721969 TGTAAAATTATCAAAATACCCCCAGTTTGGAAAATTAAC-GAAGTACCCCCAATTTGTAAAATTA
1 TGTAAAATTATCGAAATA-CCCCAATTTGTAAAATT-ACTGAAATACCCTCGATTTGTAAAATTA
62722033 -CTAAATTACCCCCAGTT
64 TC-AAATTACCCCCAGTT
* * *
62722050 TGTAAAATTACCGAAATACCCCTGATTTGTAAAATTACTGAAATACCCTCGATTTGTGAAATTAT
1 TGTAAAATTATCGAAATACCCC-AATTTGTAAAATTACTGAAATACCCTCGATTTGTAAAATTAT
62722115 CAAATTACCCCCAGTT
65 CAAATTACCCCCAGTT
62722131 TGTAAAATTATCGAAATACCCCCAATTTGTAAAATTA-TAGAAATACCCTCGATTTGTAAAATTA
1 TGTAAAATTATCGAAATA-CCCCAATTTGTAAAATTACT-GAAATACCCTCGATTTGTAAAATTA
* *
62722195 TCGAAA-TACCCTC-GACT
64 TC-AAATTACCCCCAG-TT
*
62722212 TGTAAAATTATCAAAATACCC
1 TGTAAAATTATCGAAATACCC
62722233 TTGTAGTGTA
Statistics
Matches: 161, Mismatches: 15, Indels: 15
0.84 0.08 0.08
Matches are distributed among these distances:
80 11 0.07
81 142 0.88
82 8 0.05
ACGTcount: A:0.39, C:0.21, G:0.10, T:0.30
Consensus pattern (80 bp):
TGTAAAATTATCGAAATACCCCAATTTGTAAAATTACTGAAATACCCTCGATTTGTAAAATTATC
AAATTACCCCCAGTT
Found at i:62722243 original size:54 final size:55
Alignment explanation
Indices: 62722049--62722273 Score: 216
Period size: 54 Copynumber: 4.2 Consensus size: 55
62722039 TACCCCCAGT
* * * *
62722049 TTGTAAAATTACCGAAATACCCCTGATTTGTAAAATTA-CTGAAATACCCTCGAT
1 TTGTAAAATTATCAAAATACCCCTGATTTGTAAAATTATCAGAAATACCCTCGAC
* * * * * *
62722103 TTGTGAAATTATCAAATTACCCC-CAGTTTGTAAAATTATC-GAAATACCCCCAAT
1 TTGTAAAATTATCAAAATACCCCTGA-TTTGTAAAATTATCAGAAATACCCTCGAC
62722157 TTGTAAAATTAT-AGAAATA-CCCTCGATTTGTAAAATTATC-GAAATACCCTCGAC
1 TTGTAAAATTATCA-AAATACCCCT-GATTTGTAAAATTATCAGAAATACCCTCGAC
* * * *
62722211 TTGTAAAATTATCAAAATACCCTTG-TAGTGTAAAA-TATCAAAAATACCCTTGTAC
1 TTGTAAAATTATCAAAATACCCCTGAT-TTGTAAAATTATCAGAAATACCCTCG-AC
62722266 -TGTAAAAT
1 TTGTAAAAT
62722274 GACCGACATA
Statistics
Matches: 144, Mismatches: 17, Indels: 20
0.80 0.09 0.11
Matches are distributed among these distances:
53 10 0.07
54 126 0.88
55 8 0.06
ACGTcount: A:0.39, C:0.19, G:0.10, T:0.32
Consensus pattern (55 bp):
TTGTAAAATTATCAAAATACCCCTGATTTGTAAAATTATCAGAAATACCCTCGAC
Found at i:62722261 original size:27 final size:26
Alignment explanation
Indices: 62722185--62722273 Score: 108
Period size: 27 Copynumber: 3.3 Consensus size: 26
62722175 ACCCTCGATT
* *
62722185 TGTAAAATTATCGAAATACCCTCG-AC
1 TGTAAAA-TATCAAAATACCCTTGTAC
*
62722211 TTGTAAAATTATCAAAATACCCTTGTAG
1 -TGTAAAA-TATCAAAATACCCTTGTAC
62722239 TGTAAAATATCAAAAATACCCTTGTAC
1 TGTAAAATATC-AAAATACCCTTGTAC
62722266 TGTAAAAT
1 TGTAAAAT
62722274 GACCGACATA
Statistics
Matches: 56, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
26 4 0.07
27 51 0.91
28 1 0.02
ACGTcount: A:0.42, C:0.17, G:0.10, T:0.31
Consensus pattern (26 bp):
TGTAAAATATCAAAATACCCTTGTAC
Found at i:62722854 original size:27 final size:27
Alignment explanation
Indices: 62722788--62722854 Score: 64
Period size: 27 Copynumber: 2.5 Consensus size: 27
62722778 ATTGCGATGT
* * * *
62722788 GGGCTTAGGCCCAATTGATTCTGTTAT
1 GGGCTTTGGCCCAAATGATTCTGTAAC
* *
62722815 GGGCTGTGACCCAAATGATAT-TGTAAC
1 GGGCTTTGGCCCAAATGAT-TCTGTAAC
62722842 GGGCTTTGGCCCA
1 GGGCTTTGGCCCA
62722855 CGTATGCTCT
Statistics
Matches: 31, Mismatches: 8, Indels: 2
0.76 0.20 0.05
Matches are distributed among these distances:
27 30 0.97
28 1 0.03
ACGTcount: A:0.21, C:0.21, G:0.28, T:0.30
Consensus pattern (27 bp):
GGGCTTTGGCCCAAATGATTCTGTAAC
Found at i:62725277 original size:28 final size:28
Alignment explanation
Indices: 62725237--62725357 Score: 143
Period size: 28 Copynumber: 4.3 Consensus size: 28
62725227 TGGGAAGTAG
* *
62725237 TTGGGCCTGATGGGTCATATGCATGTGA
1 TTGGGCCTGATGGGCCATATGAATGTGA
*
62725265 TTGGGTCTGATGGGCCATATGAATGTGA
1 TTGGGCCTGATGGGCCATATGAATGTGA
* * *
62725293 TTGGGCCTAATGGGCCATATGAACGAGA
1 TTGGGCCTGATGGGCCATATGAATGTGA
* * * *
62725321 TTGGGCCTAAAGGGGCCATATGAACGAGA
1 TTGGGCCT-GATGGGCCATATGAATGTGA
62725350 TTGGGCCT
1 TTGGGCCT
62725358 AAAGGGGCCA
Statistics
Matches: 84, Mismatches: 8, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
28 57 0.68
29 27 0.32
ACGTcount: A:0.23, C:0.16, G:0.35, T:0.26
Consensus pattern (28 bp):
TTGGGCCTGATGGGCCATATGAATGTGA
Found at i:62725344 original size:29 final size:29
Alignment explanation
Indices: 62725276--62725373 Score: 153
Period size: 29 Copynumber: 3.4 Consensus size: 29
62725266 TGGGTCTGAT
* * *
62725276 GGGCCATATGAATGTGATTGGGCCT-AAT
1 GGGCCATATGAACGAGATTGGGCCTAAAG
62725304 GGGCCATATGAACGAGATTGGGCCTAAAG
1 GGGCCATATGAACGAGATTGGGCCTAAAG
62725333 GGGCCATATGAACGAGATTGGGCCTAAAG
1 GGGCCATATGAACGAGATTGGGCCTAAAG
*
62725362 GGGCCAAATGAA
1 GGGCCATATGAA
62725374 TAAGTGTGGA
Statistics
Matches: 65, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
28 23 0.35
29 42 0.65
ACGTcount: A:0.31, C:0.16, G:0.34, T:0.19
Consensus pattern (29 bp):
GGGCCATATGAACGAGATTGGGCCTAAAG
Found at i:62725679 original size:27 final size:27
Alignment explanation
Indices: 62725649--62725883 Score: 222
Period size: 27 Copynumber: 8.7 Consensus size: 27
62725639 TAATAAAGAG
*
62725649 AAATTATCGAAATACCCTCGGTTTGTA
1 AAATTACCGAAATACCCTCGGTTTGTA
* *
62725676 AAATTACCGAAGTACCCTCAGTTTGTA
1 AAATTACCGAAATACCCTCGGTTTGTA
* * *
62725703 AAATTATCGAAATA-CCTCTGATTTGGA
1 AAATTACCGAAATACCCTC-GGTTTGTA
* * *
62725730 AAATTACCGAAGTACCCCCCGATTTGTA
1 AAATTACCGAAATA-CCCTCGGTTTGTA
* * *
62725758 AAATTATCAAAATACCCTTGGTTTGTA
1 AAATTACCGAAATACCCTCGGTTTGTA
* * *
62725785 AAATTACCAAAATACCTTCAGTTTGTA
1 AAATTACCGAAATACCCTCGGTTTGTA
* *
62725812 AAATTACCGAAATACCCCCGATTTGTA
1 AAATTACCGAAATACCCTCGGTTTGTA
** * * *
62725839 AAATTGTCGAAATATCCT-TGTAGTGTA
1 AAATTACCGAAATACCCTCGGT-TTGTA
*
62725866 AAATTACCAAAATACCCT
1 AAATTACCGAAATACCCT
62725884 TGTAGTGTAA
Statistics
Matches: 166, Mismatches: 38, Indels: 8
0.78 0.18 0.04
Matches are distributed among these distances:
26 5 0.03
27 140 0.84
28 18 0.11
29 3 0.02
ACGTcount: A:0.37, C:0.20, G:0.12, T:0.31
Consensus pattern (27 bp):
AAATTACCGAAATACCCTCGGTTTGTA
Found at i:62725713 original size:54 final size:54
Alignment explanation
Indices: 62725649--62725843 Score: 257
Period size: 54 Copynumber: 3.6 Consensus size: 54
62725639 TAATAAAGAG
*
62725649 AAATTATCGAAATACCCTCGGTTTGTAAAATTACCGAAGTACCCTCAGTTTGTA
1 AAATTATCGAAATACCCTCGATTTGTAAAATTACCGAAGTACCCTCAGTTTGTA
* * *
62725703 AAATTATCGAAATA-CCTCTGATTTGGAAAATTACCGAAGTACCCCCCGATTTGTA
1 AAATTATCGAAATACCCTC-GATTTGTAAAATTACCGAAGTACCCTCAG-TTTGTA
* * * * * *
62725758 AAATTATCAAAATACCCTTGGTTTGTAAAATTACCAAAATACCTTCAGTTTGTA
1 AAATTATCGAAATACCCTCGATTTGTAAAATTACCGAAGTACCCTCAGTTTGTA
* *
62725812 AAATTACCGAAATACCCCCGATTTGTAAAATT
1 AAATTATCGAAATACCCTCGATTTGTAAAATT
62725844 GTCGAAATAT
Statistics
Matches: 120, Mismatches: 18, Indels: 6
0.83 0.12 0.04
Matches are distributed among these distances:
53 4 0.03
54 72 0.60
55 41 0.34
56 3 0.03
ACGTcount: A:0.36, C:0.20, G:0.12, T:0.31
Consensus pattern (54 bp):
AAATTATCGAAATACCCTCGATTTGTAAAATTACCGAAGTACCCTCAGTTTGTA
Found at i:62725774 original size:82 final size:81
Alignment explanation
Indices: 62725649--62725881 Score: 272
Period size: 82 Copynumber: 2.9 Consensus size: 81
62725639 TAATAAAGAG
* * * * * * *
62725649 AAATTATCGAAATACCCTCGGTTTGTAAAATTACCGAAGTACCCTCAGTTTGTAAAATTATCGAA
1 AAATTACCGAAATACCCCCGATTTGTAAAATTATCGAAATACCCTCAGTTTGTAAAATTACCAAA
*
62725714 ATACC-TCTGATTTGGA
66 ATACCTTCAG-TTTGGA
* * **
62725730 AAATTACCGAAGTACCCCCCGATTTGTAAAATTATCAAAATACCCTTGGTTTGTAAAATTACCAA
1 AAATTACCGAAATA-CCCCCGATTTGTAAAATTATCGAAATACCCTCAGTTTGTAAAATTACCAA
*
62725795 AATACCTTCAGTTTGTA
65 AATACCTTCAGTTTGGA
* * * *
62725812 AAATTACCGAAATACCCCCGATTTGTAAAATTGTCGAAATATCCT-TGTAGTGTAAAATTACCAA
1 AAATTACCGAAATACCCCCGATTTGTAAAATTATCGAAATACCCTCAGT-TTGTAAAATTACCAA
62725876 AATACC
65 AATACC
62725882 CTTGTAGTGT
Statistics
Matches: 130, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
80 2 0.02
81 60 0.46
82 65 0.50
83 3 0.02
ACGTcount: A:0.37, C:0.20, G:0.12, T:0.31
Consensus pattern (81 bp):
AAATTACCGAAATACCCCCGATTTGTAAAATTATCGAAATACCCTCAGTTTGTAAAATTACCAAA
ATACCTTCAGTTTGGA
Found at i:62725884 original size:27 final size:27
Alignment explanation
Indices: 62725754--62725923 Score: 123
Period size: 27 Copynumber: 6.3 Consensus size: 27
62725744 CCCCCCGATT
* *
62725754 TGTAAAATTATCAAAATACCCTTGGT-T
1 TGTAAAATTACCAAAATACCCTT-GTAG
*
62725781 TGTAAAATTACCAAAATA-CCTTCAGT-T
1 TGTAAAATTACCAAAATACCCTT--GTAG
* ** *
62725808 TGTAAAATTACCGAAATACCCCCG-ATT
1 TGTAAAATTACCAAAATACCCTTGTA-G
** * *
62725835 TGTAAAATTGTCGAAATATCCTTGTAG
1 TGTAAAATTACCAAAATACCCTTGTAG
62725862 TGTAAAATTACCAAAATACCCTTGTAG
1 TGTAAAATTACCAAAATACCCTTGTAG
* * ** *
62725889 TGTAAAGTGACTGACATACCCTTGTAG
1 TGTAAAATTACCAAAATACCCTTGTAG
*
62725916 GGTAAAAT
1 TGTAAAAT
62725924 GACTGTTTTG
Statistics
Matches: 116, Mismatches: 22, Indels: 10
0.78 0.15 0.07
Matches are distributed among these distances:
26 5 0.04
27 108 0.93
28 3 0.03
ACGTcount: A:0.37, C:0.17, G:0.14, T:0.32
Consensus pattern (27 bp):
TGTAAAATTACCAAAATACCCTTGTAG
Found at i:62725908 original size:81 final size:80
Alignment explanation
Indices: 62725656--62725909 Score: 217
Period size: 81 Copynumber: 3.1 Consensus size: 80
62725646 GAGAAATTAT
* * * * * ** * * *
62725656 CGAAATACCCTCGGTTTGTAAAATTACCGAAGTACCCTCAGTTTGTAAAATTATCGAAATACCTC
1 CGAAATACCCCCGATTTGTAAAATTATCAAAATACCCTTGGTGTGTAAAATTACCAAAATACCT-
* * *
62725721 T-GATTTGGAAAATTAC
65 TAG-TGTGTAAAATGAC
* *
62725737 CGAAGTACCCCCCGATTTGTAAAATTATCAAAATACCCTTGGTTTGTAAAATTACCAAAATACCT
1 CGAAATA-CCCCCGATTTGTAAAATTATCAAAATACCCTTGGTGTGTAAAATTACCAAAATACCT
* *
62725802 TCAGTTTGTAAAATTAC
65 T-AGTGTGTAAAATGAC
* * *
62725819 CGAAATACCCCCGATTTGTAAAATTGTCGAAATATCCTT-GTAGTGTAAAATTACCAAAATACCC
1 CGAAATACCCCCGATTTGTAAAATTATCAAAATACCCTTGGT-GTGTAAAATTACCAAAATA-CC
*
62725883 TT-GTAGTGTAAAGTGAC
64 TTAGT-GTGTAAAATGAC
* *
62725900 TGACATACCC
1 CGAAATACCC
62725910 TTGTAGGGTA
Statistics
Matches: 146, Mismatches: 21, Indels: 12
0.82 0.12 0.07
Matches are distributed among these distances:
80 4 0.03
81 71 0.49
82 70 0.48
83 1 0.01
ACGTcount: A:0.35, C:0.20, G:0.14, T:0.30
Consensus pattern (80 bp):
CGAAATACCCCCGATTTGTAAAATTATCAAAATACCCTTGGTGTGTAAAATTACCAAAATACCTT
AGTGTGTAAAATGAC
Found at i:62725926 original size:27 final size:27
Alignment explanation
Indices: 62725854--62725955 Score: 91
Period size: 27 Copynumber: 3.9 Consensus size: 27
62725844 GTCGAAATAT
* * ** *
62725854 CCTTGTAGTGTAAAATTACCAAAATAC
1 CCTTGTAGGGTAAAATGACTGACATAC
* *
62725881 CCTTGTAGTGTAAAGTGACTGACATAC
1 CCTTGTAGGGTAAAATGACTGACATAC
*** *
62725908 CCTTGTAGGGTAAAATGACTGTTTTGC
1 CCTTGTAGGGTAAAATGACTGACATAC
62725935 CCTTG-AGGGT-AAATGACTGAC
1 CCTTGTAGGGTAAAATGACTGAC
62725956 TTAGACTTCG
Statistics
Matches: 62, Mismatches: 13, Indels: 2
0.81 0.17 0.03
Matches are distributed among these distances:
25 9 0.15
26 5 0.08
27 48 0.77
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.30
Consensus pattern (27 bp):
CCTTGTAGGGTAAAATGACTGACATAC
Found at i:62725985 original size:17 final size:17
Alignment explanation
Indices: 62725959--62725992 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
62725949 GACTGACTTA
62725959 GACTTCGAATTTGACTG
1 GACTTCGAATTTGACTG
*
62725976 GACTTTGAATTTGACTG
1 GACTTCGAATTTGACTG
62725993 ATTTGATTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.24, C:0.15, G:0.24, T:0.38
Consensus pattern (17 bp):
GACTTCGAATTTGACTG
Found at i:62731478 original size:37 final size:37
Alignment explanation
Indices: 62731401--62731485 Score: 109
Period size: 37 Copynumber: 2.3 Consensus size: 37
62731391 TTTGCGTACG
*
62731401 TGTAAGACCATAGATGGGCTATGGCATCGTAATGACA
1 TGTAAGACCATAGATGGGCTATGGCATCGTAATCACA
* * * *
62731438 TGTAAGACCGTAGCTGGGCTATGGCATTGTGATC-CAA
1 TGTAAGACCATAGATGGGCTATGGCATCGTAATCAC-A
62731475 TGTAAGACCAT
1 TGTAAGACCAT
62731486 GTTTAGGACA
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
36 1 0.02
37 40 0.98
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.26
Consensus pattern (37 bp):
TGTAAGACCATAGATGGGCTATGGCATCGTAATCACA
Found at i:62731526 original size:48 final size:48
Alignment explanation
Indices: 62731465--62731735 Score: 279
Period size: 48 Copynumber: 5.8 Consensus size: 48
62731455 GCTATGGCAT
* * *
62731465 TGTGATCCAATGTAAGACCATGTTTAGGACATGGCATTGGAATCGATA
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGAATCGATA
62731513 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATT-GACATCGATA
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGA-ATCGATA
* * *
62731561 TGTGATCCCATGTAAGACCATGTCTGCGACAT---A---GCATCGGTA
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGAATCGATA
* ** *
62731603 GGTGATCCCATGTAAGACCATGTCTGGGACACAGCATTGGCATC-ACTA
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGAATCGA-TA
* * * * * **
62731651 TGTGATCCTATGTAAGACCATATTTGGGATATGGCGTTGGTGTCGATA
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGAATCGATA
** * *
62731699 TGTGATTTCGTGTAAGACCATGTCTTGGACATGGCAT
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCAT
62731736 CAATATGAGA
Statistics
Matches: 185, Mismatches: 29, Indels: 18
0.80 0.12 0.08
Matches are distributed among these distances:
42 35 0.19
43 1 0.01
45 2 0.01
47 2 0.01
48 144 0.78
49 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (48 bp):
TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGAATCGATA
Found at i:62731608 original size:42 final size:42
Alignment explanation
Indices: 62731506--62731639 Score: 169
Period size: 42 Copynumber: 3.0 Consensus size: 42
62731496 TGGCATTGGA
*
62731506 ATCGATATGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGAC
1 ATCGATAGGTGATCCCATGTAAGACCATGTCTGGGACAT---A--G-C
* *
62731554 ATCGATATGTGATCCCATGTAAGACCATGTCTGCGACATAGC
1 ATCGATAGGTGATCCCATGTAAGACCATGTCTGGGACATAGC
* *
62731596 ATCGGTAGGTGATCCCATGTAAGACCATGTCTGGGACACAGC
1 ATCGATAGGTGATCCCATGTAAGACCATGTCTGGGACATAGC
62731638 AT
1 AT
62731640 TGGCATCACT
Statistics
Matches: 81, Mismatches: 5, Indels: 6
0.88 0.05 0.07
Matches are distributed among these distances:
42 41 0.51
43 1 0.01
45 1 0.01
48 38 0.47
ACGTcount: A:0.28, C:0.22, G:0.25, T:0.25
Consensus pattern (42 bp):
ATCGATAGGTGATCCCATGTAAGACCATGTCTGGGACATAGC
Found at i:62731714 original size:138 final size:138
Alignment explanation
Indices: 62731466--62731736 Score: 348
Period size: 138 Copynumber: 2.0 Consensus size: 138
62731456 CTATGGCATT
* **
62731466 GTGATCCAATGTAAGACCATGTTTAGGACATGGCATTGGAATCGATATGTGATCCCATGTAAGAC
1 GTGATCCAATGTAAGACCATGTCTAGGACACAGCATTGGAATCGATATGTGATCCCATGTAAGAC
*
62731531 CATGTCTGGGACATGGCATTGACATCGATATGTGATCCCATGTAAGACCATGTC-TGCGACATAG
66 CATATCTGGGACATGGCATTGACATCGATATGTGATCCCATGTAAGACCATGTCTTG-GACATAG
62731595 CATCGGTAG
130 CATCGGTAG
* * * *
62731604 GTGATCCCATGTAAGACCATGTCTGGGACACAGCATTGGCATC-ACTATGTGATCCTATGTAAGA
1 GTGATCCAATGTAAGACCATGTCTAGGACACAGCATTGGAATCGA-TATGTGATCCCATGTAAGA
* * * *** ** * *
62731668 CCATATTTGGGATATGGCGTTGGTGTCGATATGTGATTTCGTGTAAGACCATGTCTTGGACATGG
65 CCATATCTGGGACATGGCATTGACATCGATATGTGATCCCATGTAAGACCATGTCTTGGACATAG
62731733 CATC
130 CATC
62731737 AATATGAGAC
Statistics
Matches: 113, Mismatches: 18, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
137 1 0.01
138 110 0.97
139 2 0.02
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (138 bp):
GTGATCCAATGTAAGACCATGTCTAGGACACAGCATTGGAATCGATATGTGATCCCATGTAAGAC
CATATCTGGGACATGGCATTGACATCGATATGTGATCCCATGTAAGACCATGTCTTGGACATAGC
ATCGGTAG
Found at i:62731755 original size:42 final size:42
Alignment explanation
Indices: 62731696--62731780 Score: 120
Period size: 42 Copynumber: 2.0 Consensus size: 42
62731686 GTTGGTGTCG
* *
62731696 ATATGTGATTTCGTGTAAGACCAT-GTCTTGGAC-ATGGCATCA
1 ATATGAGACTTCGTGTAAGACCATAG--TTGGACTATGGCATCA
62731738 ATATGAGACTTCGTGTAAGACCATAGTTGGACTATGGCATCA
1 ATATGAGACTTCGTGTAAGACCATAGTTGGACTATGGCATCA
62731780 A
1 A
62731781 GTAAACGACG
Statistics
Matches: 39, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
41 6 0.15
42 32 0.82
43 1 0.03
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.31
Consensus pattern (42 bp):
ATATGAGACTTCGTGTAAGACCATAGTTGGACTATGGCATCA
Found at i:62733150 original size:55 final size:53
Alignment explanation
Indices: 62733045--62733296 Score: 248
Period size: 55 Copynumber: 4.8 Consensus size: 53
62733035 AGGGTTTAAA
* * *
62733045 GATACCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTC-TAAGGCAAG
1 GATACCATGTAAGACCATGTCAAGACATGG-CATTGGTAA-G-TTCATAAGGCAAG
* * * *
62733100 GAAATCATGTAAGACTATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAG
1 GATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTT-C-ATAAGGC-AAG
* * * *
62733156 G-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGCAAG
1 GATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTCATAAGGCAAG
*
62733208 GATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTT--TCAA---AAG
1 GATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTCAT-AAGGCAAG
* * * *
62733257 GATACCACGTAAGACCATGACAAGTCATGGCAATGGTAAG
1 GATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAG
62733297 GTACCCGTGT
Statistics
Matches: 168, Mismatches: 23, Indels: 18
0.80 0.11 0.09
Matches are distributed among these distances:
49 40 0.24
51 1 0.01
52 8 0.05
53 44 0.26
54 8 0.05
55 63 0.38
56 4 0.02
ACGTcount: A:0.36, C:0.17, G:0.25, T:0.22
Consensus pattern (53 bp):
GATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTCATAAGGCAAG
Found at i:62733248 original size:108 final size:110
Alignment explanation
Indices: 62733049--62733249 Score: 309
Period size: 108 Copynumber: 1.8 Consensus size: 110
62733039 TTTAAAGATA
*
62733049 CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGCAAGGAAATCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
* *
62733114 CTATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTC
66 CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
* * *
62733159 CCATGTAAGACCATGCCAAGGCATGG-CATTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAG
1 CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTC-TAAGGCAAGGAAACCATGTAAG
*
62733221 ACCATGTCAAGACATGGCAATGGTAAGTT
65 ACCATGTCAAGACATGGCAATGATAAGTT
62733250 TCAAAAGGAT
Statistics
Matches: 83, Mismatches: 7, Indels: 4
0.88 0.07 0.04
Matches are distributed among these distances:
107 3 0.04
108 47 0.57
109 7 0.08
110 26 0.31
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.23
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
Found at i:62737426 original size:50 final size:50
Alignment explanation
Indices: 62737307--62737549 Score: 227
Period size: 51 Copynumber: 4.8 Consensus size: 50
62737297 GTTGTGAGAA
* * * *** *
62737307 CACATGTGTAGTACTATGTGCAGGATACTATGAGTTTAAAATGGTTTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATGG--TTAGGT
*
62737359 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATGGTTAGGT
* * * * * * *
62737409 CGCATGGGTAGTACTAAGTGCAGGCTACTATGAGTACCCGATAGCTTCGAT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGAT-GGTTAGGT
* * ** * *
62737460 CACATGTGTGGTACTAAGTGCAGGCCACTATGTGTAAGAGACGGTTCTGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATGGTT-AGGT
* *
62737511 CACA-GATGTATTACTAAGTGCAGGCTACTATGTGCACCA
1 CACATG-TGTAGTACTAAGTGCAGGCTACTATGTGTACCA
62737550 AATAGCTTCG
Statistics
Matches: 154, Mismatches: 34, Indels: 7
0.79 0.17 0.04
Matches are distributed among these distances:
50 47 0.31
51 71 0.46
52 36 0.23
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.29
Consensus pattern (50 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATGGTTAGGT
Found at i:62737495 original size:101 final size:102
Alignment explanation
Indices: 62737358--62737589 Score: 261
Period size: 102 Copynumber: 2.3 Consensus size: 102
62737348 TGGTTTTAGG
* * * * *
62737358 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTT-AGGTCGCATG-GGTAGT
1 TCACATGTGTGGTACTAAGTGCAGGCCACTACGTGTAACAGACGGTTCAGGTCACA-GAGGTAGT
* **
62737421 ACTAAGTGCAGGCTACTATGAGTACCCGATAGCTTCGA
65 ACTAAGTGCAGGCTACTATGAGCACCAAATAGCTTCGA
* * * * *
62737459 TCACATGTGTGGTACTAAGTGCAGGCCACTATGTGTAAGAGACGGTTCTGGTCACAGATGTATTA
1 TCACATGTGTGGTACTAAGTGCAGGCCACTACGTGTAACAGACGGTTCAGGTCACAGAGGTAGTA
* *
62737524 CTAAGTGCAGGCTACTATGTGCACCAAATAGCTTCGG
66 CTAAGTGCAGGCTACTATGAGCACCAAATAGCTTCGA
* * * * *
62737561 TTACAAGGGTGGTAATATGTGCAGGCCAC
1 TCACATGTGTGGTACTAAGTGCAGGCCAC
62737590 CGAGTATCTG
Statistics
Matches: 109, Mismatches: 20, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
101 42 0.39
102 67 0.61
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.27
Consensus pattern (102 bp):
TCACATGTGTGGTACTAAGTGCAGGCCACTACGTGTAACAGACGGTTCAGGTCACAGAGGTAGTA
CTAAGTGCAGGCTACTATGAGCACCAAATAGCTTCGA
Found at i:62743241 original size:45 final size:45
Alignment explanation
Indices: 62743177--62743265 Score: 178
Period size: 45 Copynumber: 2.0 Consensus size: 45
62743167 GATGTTGCCA
62743177 TAGAAGGGAAAAATGATCAGAATGTCATAAAACATAAGAAAATAT
1 TAGAAGGGAAAAATGATCAGAATGTCATAAAACATAAGAAAATAT
62743222 TAGAAGGGAAAAATGATCAGAATGTCATAAAACATAAGAAAATA
1 TAGAAGGGAAAAATGATCAGAATGTCATAAAACATAAGAAAATA
62743266 GGATGAAGTT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 44 1.00
ACGTcount: A:0.56, C:0.07, G:0.18, T:0.19
Consensus pattern (45 bp):
TAGAAGGGAAAAATGATCAGAATGTCATAAAACATAAGAAAATAT
Found at i:62744021 original size:49 final size:49
Alignment explanation
Indices: 62743942--62744180 Score: 298
Period size: 49 Copynumber: 4.8 Consensus size: 49
62743932 ACTATTGTGA
*
62743942 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
* * * * *
62743991 GGTCTCATGTGTAGTACTAAGTGCAAGCTACTATGCGTACCCGATAACTT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAA-TT
* * * * * ** *
62744041 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTATCAGATGGTCA
1 -GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAAT-T
*
62744092 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
* *
62744141 GGCCGCATGTGTAGTACTAAGTGCAGGCTACTACGTGTAC
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTAC
62744181 TAGATAGCCT
Statistics
Matches: 159, Mismatches: 28, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
49 78 0.49
50 45 0.28
51 36 0.23
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.28
Consensus pattern (49 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
Found at i:62747263 original size:15 final size:15
Alignment explanation
Indices: 62747245--62747277 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
62747235 TGGATTCTCG
62747245 TATCATGGATTTCTT
1 TATCATGGATTTCTT
*
62747260 TATCTTGGATTTCTT
1 TATCATGGATTTCTT
62747275 TAT
1 TAT
62747278 TCTGGGCTTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.18, C:0.12, G:0.12, T:0.58
Consensus pattern (15 bp):
TATCATGGATTTCTT
Found at i:62750137 original size:49 final size:49
Alignment explanation
Indices: 62750055--62750279 Score: 245
Period size: 49 Copynumber: 4.5 Consensus size: 49
62750045 TGAGGTCACG
* *
62750055 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTTGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCA
* * * * * * *
62750104 TGTG-AGGTACTAAGTACAGGCTACTATGCGTACCCGATAACTTCGATCACG
1 TGTGTA-GTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TT-GGTCGCA
* * * ** * *
62750155 TGTGTAGTACTAAGTGCAGGCTACTACATGTATCAAATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT-GGTCGCA
* *
62750205 TGTGCAGTACTAAGTGCAGGCTACTACGTGTATCAGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCA
62750254 TGTGTAGTACTAAGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
62750280 TGCGTTCTAG
Statistics
Matches: 145, Mismatches: 27, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
48 1 0.01
49 64 0.44
50 47 0.32
51 32 0.22
52 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.29
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCA
Found at i:62754406 original size:39 final size:38
Alignment explanation
Indices: 62754363--62754491 Score: 177
Period size: 39 Copynumber: 3.3 Consensus size: 38
62754353 TTTGAGATTG
*
62754363 AAAATATCCGAACATGAGGTCCGCAGGCTATATGCTGGA
1 AAAATATCCG-ACATGAGGTCCGCAGGCTACATGCTGGA
*
62754402 AAAATATCCTGACATGAGATCCGCAGGCTACATGCTGGAA
1 AAAATATCC-GACATGAGGTCCGCAGGCTACATGCTGG-A
* *
62754442 AAATATATCCGGACTTGAGGTCTGCAGGCTACATGCTGGA
1 AAA-ATATCC-GACATGAGGTCCGCAGGCTACATGCTGGA
62754482 AAAATATCCG
1 AAAATATCCG
62754492 GGTTAAAGAC
Statistics
Matches: 81, Mismatches: 6, Indels: 7
0.86 0.06 0.07
Matches are distributed among these distances:
38 1 0.01
39 40 0.49
40 9 0.11
41 31 0.38
ACGTcount: A:0.33, C:0.21, G:0.24, T:0.22
Consensus pattern (38 bp):
AAAATATCCGACATGAGGTCCGCAGGCTACATGCTGGA
Found at i:62754469 original size:41 final size:41
Alignment explanation
Indices: 62754366--62754488 Score: 178
Period size: 41 Copynumber: 3.0 Consensus size: 41
62754356 GAGATTGAAA
* *
62754366 ATATCCGAACATGAGGTCCGCAGGCTATATGCTGG-AAAA-
1 ATATCCGGACATGAGGTCCGCAGGCTACATGCTGGAAAAAT
* *
62754405 ATATCCTGACATGAGATCCGCAGGCTACATGCTGGAAAAAT
1 ATATCCGGACATGAGGTCCGCAGGCTACATGCTGGAAAAAT
* *
62754446 ATATCCGGACTTGAGGTCTGCAGGCTACATGCTGGAAAAAT
1 ATATCCGGACATGAGGTCCGCAGGCTACATGCTGGAAAAAT
62754487 AT
1 AT
62754489 CCGGGTTAAA
Statistics
Matches: 74, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
39 31 0.42
40 4 0.05
41 39 0.53
ACGTcount: A:0.33, C:0.20, G:0.24, T:0.23
Consensus pattern (41 bp):
ATATCCGGACATGAGGTCCGCAGGCTACATGCTGGAAAAAT
Found at i:62754508 original size:39 final size:39
Alignment explanation
Indices: 62754382--62754510 Score: 127
Period size: 39 Copynumber: 3.3 Consensus size: 39
62754372 GAACATGAGG
* * **
62754382 TCCGCAGGCTATATGCTGGAAAAATATCC-TGACATGAGA
1 TCCGCAGGCTACATGCTGGAAAAATATCCGGGTTA-GAGA
* *
62754421 TCCGCAGGCTACATGCTGGAAAAATATATCCGGACTT-GAGG
1 TCCGCAGGCTACATGCTGG-AAAA-ATATCCGG-GTTAGAGA
* *
62754462 TCTGCAGGCTACATGCTGGAAAAATATCCGGGTTAAAGA
1 TCCGCAGGCTACATGCTGGAAAAATATCCGGGTTAGAGA
*
62754501 CCCGCAGGCT
1 TCCGCAGGCT
62754511 TACGCTAGTA
Statistics
Matches: 73, Mismatches: 12, Indels: 10
0.77 0.13 0.11
Matches are distributed among these distances:
38 2 0.03
39 36 0.49
40 8 0.11
41 27 0.37
ACGTcount: A:0.30, C:0.22, G:0.26, T:0.22
Consensus pattern (39 bp):
TCCGCAGGCTACATGCTGGAAAAATATCCGGGTTAGAGA
Found at i:62762415 original size:39 final size:39
Alignment explanation
Indices: 62762371--62762498 Score: 166
Period size: 39 Copynumber: 3.3 Consensus size: 39
62762361 TTTGAGATCG
* *
62762371 AAAATATCCGGACATGAGGTCCGCAGGCTGTATACTAGA
1 AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTAGA
* * *
62762410 AAAATATCCGGACATGAGATCTGCGGGCTATATGCTAGA
1 AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTAGA
* * * * *
62762449 AATATATCCAGACTTGAGGTCCGCAGGCTACATGCTGGA
1 AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTAGA
62762488 AAAATATCCGG
1 AAAATATCCGG
62762499 GTTAAAGACC
Statistics
Matches: 74, Mismatches: 15, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
39 74 1.00
ACGTcount: A:0.33, C:0.20, G:0.25, T:0.22
Consensus pattern (39 bp):
AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTAGA
Found at i:62764319 original size:43 final size:43
Alignment explanation
Indices: 62764244--62764363 Score: 143
Period size: 43 Copynumber: 2.8 Consensus size: 43
62764234 TCTGAACTCA
* * * ** *
62764244 TTCACCGGCATT-TCGTCTACTAGGCTTGAAGCCTAATATCAT
1 TTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCAATATCAT
* *
62764286 TTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGATATTAT
1 TTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCAATATCAT
* *
62764329 CTCACCGGCATTATAGCCTGCTAGGCCCGTAGCCC
1 TTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCC
62764364 GATAATATTA
Statistics
Matches: 67, Mismatches: 10, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
42 12 0.18
43 55 0.82
ACGTcount: A:0.22, C:0.32, G:0.20, T:0.27
Consensus pattern (43 bp):
TTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCAATATCAT
Found at i:62773029 original size:47 final size:47
Alignment explanation
Indices: 62772972--62773521 Score: 886
Period size: 47 Copynumber: 11.6 Consensus size: 47
62772962 TATTTGAATA
* *
62772972 AATGTCAAAGTGTATATATGTGATAAAGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
62773019 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
62773068 ATTGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
62773117 AATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
62773164 AATGTGAAAGTGTATATATGTGATAAGG-CTGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCT-AATGGCCGATGTGATG
*
62773211 AATTTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
62773260 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
62773307 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
62773354 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
62773401 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * *
62773448 AATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
62773495 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
62773522 TCCCGAAGGG
Statistics
Matches: 473, Mismatches: 24, Indels: 12
0.93 0.05 0.02
Matches are distributed among these distances:
46 2 0.00
47 339 0.72
49 130 0.27
50 2 0.00
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:62773241 original size:143 final size:143
Alignment explanation
Indices: 62772972--62773521 Score: 937
Period size: 143 Copynumber: 3.9 Consensus size: 143
62772962 TATTTGAATA
* *
62772972 AATGTCAAAGTGTATATATGTGATAAAGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATA
*
62773037 TATGTGATAAGGCCGAATGGCCAATGTGATGATTGTGAAAGTGTATATATATGTGATAAGGCCTA
64 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTA
62773102 ATGGCCGATGTGATG
129 ATGGCCGATGTGATG
*
62773117 AATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* *
62773182 TGTGATAAGGCTGAATGGCCAATGTGATGAATTTGAAAGTGTATATATATGTGATAAGGCCTAAT
66 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAAT
62773247 GGCCGATGTGATG
131 GGCCGATGTGATG
*
62773260 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* *
62773325 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAAT
66 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAAT
62773388 GGCCGATGTGATG
131 GGCCGATGTGATG
62773401 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* * * *
62773466 TGTGATAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATA-A-ATGTGATAAG
66 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
62773522 TCCCGAAGGG
Statistics
Matches: 384, Mismatches: 19, Indels: 8
0.93 0.05 0.02
Matches are distributed among these distances:
141 144 0.38
142 1 0.00
143 183 0.48
145 56 0.15
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (143 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAAT
GGCCGATGTGATG
Found at i:62775365 original size:55 final size:53
Alignment explanation
Indices: 62775182--62775433 Score: 221
Period size: 55 Copynumber: 4.8 Consensus size: 53
62775172 CAGGTACCTT
* * * *
62775182 ACCATTGCCATGACTTGTCATGGTCTTACATGGTATCC-T---TT-TGAAACTT
1 ACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATG-AACTC
* * *
62775231 ACCATTGCCATGTCTCGACATGGTCTTACGTGGTATCCTTGCCTTATGAACTC
1 ACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAACTC
* * * * *
62775284 ACCAGTGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTGGCCTTATAGTAACTT
1 ACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTT-GCCTTAT-G-AACTC
** * *
62775339 ATTAATGCCATGTCTTAACATGGTCTTACATGGTATCCTTGCCTTA-GAAACCTT
1 ACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATG-AA-CTC
* * *
62775393 ACCAATTGTCATGCCTTGGCATGGTCTTACATGGTATCCTT
1 ACCAA-TGCCATGTCTTGACATGGTCTTACATGGTATCCTT
62775434 AAACCCTAAT
Statistics
Matches: 166, Mismatches: 26, Indels: 16
0.80 0.12 0.08
Matches are distributed among these distances:
49 34 0.20
50 1 0.01
52 4 0.02
53 45 0.27
54 9 0.05
55 69 0.42
56 4 0.02
ACGTcount: A:0.21, C:0.25, G:0.19, T:0.35
Consensus pattern (53 bp):
ACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAACTC
Found at i:62775806 original size:30 final size:30
Alignment explanation
Indices: 62775770--62775828 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
62775760 TCCTTGACTC
62775770 AAACTTTGACAAACTTACACTTTTGCCCCT
1 AAACTTTGACAAACTTACACTTTTGCCCCT
* * * *
62775800 AAACTTTTACATATTTACACTTTTTCCCC
1 AAACTTTGACAAACTTACACTTTTGCCCC
62775829 AAGGCTCAGA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.29, C:0.29, G:0.03, T:0.39
Consensus pattern (30 bp):
AAACTTTGACAAACTTACACTTTTGCCCCT
Found at i:62777027 original size:37 final size:37
Alignment explanation
Indices: 62776949--62777050 Score: 127
Period size: 37 Copynumber: 2.8 Consensus size: 37
62776939 TTGAGTACGT
* * *
62776949 GTAAGACCATAGCTGGGCTATGGCATCGTAATGACAT
1 GTAAGACCATAGCTGGGCTATGGCATTGTAATCACAA
* *
62776986 GTAAGACCATAGCTGGGCTATGGCATTGTGATCCCAA
1 GTAAGACCATAGCTGGGCTATGGCATTGTAATCACAA
62777023 GTAAGACCAT-GTCTGGGAC-ATGGCATTG
1 GTAAGACCATAG-CTGGG-CTATGGCATTG
62777051 GCATCGATAT
Statistics
Matches: 58, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
36 1 0.02
37 56 0.97
38 1 0.02
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.25
Consensus pattern (37 bp):
GTAAGACCATAGCTGGGCTATGGCATTGTAATCACAA
Found at i:62777065 original size:48 final size:48
Alignment explanation
Indices: 62777012--62777288 Score: 374
Period size: 48 Copynumber: 5.8 Consensus size: 48
62777002 GCTATGGCAT
*
62777012 TGTGATCCCAAGTAAGACCATGTCTGGGACATGGCATTGGCATCGATA
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATA
* * *
62777060 TGTGATCCCATGTAAAACCATGTCTGGGACATGGAAATGGCATCGATA
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATA
* *
62777108 TGTGATCCCATGTAAGACCATGTCTAGGACATGGCATTGGCATTGATA
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATA
* * *
62777156 TGTGATCCTATGTAAGACCATGTCTGGGACATGGCATTGGCATCAACA
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATA
* ** * * *
62777204 TGTTATCTAATGTAAGACCATATCTGGGATATGACATTGGCATCGATA
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATA
**** *
62777252 TGTGATTTTGTGTAAGACCATGTTTGGGACATGGCAT
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCAT
62777289 CGATACGAGA
Statistics
Matches: 199, Mismatches: 30, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
48 199 1.00
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (48 bp):
TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATA
Found at i:62777307 original size:42 final size:41
Alignment explanation
Indices: 62777236--62777331 Score: 113
Period size: 42 Copynumber: 2.3 Consensus size: 41
62777226 TCTGGGATAT
* * * *
62777236 GACATTGGCATCGATATGTGATTTTGTGTAAGACCAT-GTTTGG
1 GACA-TGGCATCGATACGAGACTTCGTGTAAGACCATAG-TT-G
62777279 GACATGGCATCGATACGAGACTTCGTGTAAGACCATAGTTG
1 GACATGGCATCGATACGAGACTTCGTGTAAGACCATAGTTG
62777320 GACTATGGCATC
1 GAC-ATGGCATC
62777332 AAGTAAGCGA
Statistics
Matches: 47, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
41 4 0.09
42 38 0.81
43 5 0.11
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.30
Consensus pattern (41 bp):
GACATGGCATCGATACGAGACTTCGTGTAAGACCATAGTTG
Found at i:62786635 original size:51 final size:51
Alignment explanation
Indices: 62786576--62786826 Score: 360
Period size: 51 Copynumber: 4.9 Consensus size: 51
62786566 CGGATACACG
* * * *
62786576 GTGGCCTTCACTTATTACTACCCTTGTAG-CCAAAGCTATTTTATTCACAAA
1 GTGGCCTTCACATAGTACCACACTTGT-GTCCAAAGCTATTTTATTCACAAA
* *
62786627 GTGGCCTTCACCTAGTACCACCCTTGTGTCCAAAGCTATTTTATTCACAAA
1 GTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTCACAAA
** * *
62786678 GTGGCCTTCACATAGTATTACACTTGTATCCAAAGCTATTATATTCACAAA
1 GTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTCACAAA
* *
62786729 GTGCCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTATATTCACAAA
1 GTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTCACAAA
* *
62786780 GTGGCCTTCACATAGTACCACAGTTGTGTCCAAAGCCATTTTATTCA
1 GTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTCA
62786827 AAGGTTCAAC
Statistics
Matches: 182, Mismatches: 17, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
50 1 0.01
51 181 0.99
ACGTcount: A:0.29, C:0.26, G:0.13, T:0.32
Consensus pattern (51 bp):
GTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTCACAAA
Found at i:62786905 original size:52 final size:52
Alignment explanation
Indices: 62786848--62786966 Score: 211
Period size: 52 Copynumber: 2.3 Consensus size: 52
62786838 GGGAAATTTC
*
62786848 TCACTTAGCACAATGCCATGGACTTATTTCACTTAGATGCCATGGACTTATT
1 TCACTTAGCACAATGCCATGGACTTATTTCACTTAGATGCCATGGACATATT
* *
62786900 TCACTTAGCACATTGCCATGGACTTATTTCACTTAGATGCCATGGTCATATT
1 TCACTTAGCACAATGCCATGGACTTATTTCACTTAGATGCCATGGACATATT
62786952 TCACTTAGCACAATG
1 TCACTTAGCACAATG
62786967 TCATATCCTA
Statistics
Matches: 63, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 63 1.00
ACGTcount: A:0.27, C:0.24, G:0.15, T:0.34
Consensus pattern (52 bp):
TCACTTAGCACAATGCCATGGACTTATTTCACTTAGATGCCATGGACATATT
Found at i:62786925 original size:28 final size:27
Alignment explanation
Indices: 62786848--62786963 Score: 154
Period size: 24 Copynumber: 4.4 Consensus size: 27
62786838 GGGAAATTTC
62786848 TCACTTAGCACAATGCCATGGACTTATT
1 TCACTTAGCAC-ATGCCATGGACTTATT
62786876 TCACTTAG---ATGCCATGGACTTATT
1 TCACTTAGCACATGCCATGGACTTATT
62786900 TCACTTAGCACATTGCCATGGACTTATT
1 TCACTTAGCACA-TGCCATGGACTTATT
* *
62786928 TCACTTAG---ATGCCATGGTCATATT
1 TCACTTAGCACATGCCATGGACTTATT
62786952 TCACTTAGCACA
1 TCACTTAGCACA
62786964 ATGTCATATC
Statistics
Matches: 79, Mismatches: 2, Indels: 15
0.82 0.02 0.16
Matches are distributed among these distances:
24 45 0.57
25 1 0.01
27 2 0.03
28 31 0.39
ACGTcount: A:0.27, C:0.24, G:0.15, T:0.34
Consensus pattern (27 bp):
TCACTTAGCACATGCCATGGACTTATT
Found at i:62792041 original size:56 final size:57
Alignment explanation
Indices: 62791979--62792088 Score: 145
Period size: 57 Copynumber: 1.9 Consensus size: 57
62791969 TACCTATATA
* * *
62791979 TGGCCCACTAGGCCC-AATCTCTTTCATATGGCTCA-TCAGGCCC-ATTCACATTTGTG
1 TGGCCCACTAGGCCCAAATCACATTCATATGGC-CACT-AGGCCCAAATCACATTTGTG
*
62792035 TGGCCCATTAGGCCCAAATCACATTCATATGGCCACTAGGCCCAAATCACATTT
1 TGGCCCACTAGGCCCAAATCACATTCATATGGCCACTAGGCCCAAATCACATTT
62792089 ACAGTCATGC
Statistics
Matches: 47, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
56 22 0.47
57 25 0.53
ACGTcount: A:0.25, C:0.32, G:0.16, T:0.27
Consensus pattern (57 bp):
TGGCCCACTAGGCCCAAATCACATTCATATGGCCACTAGGCCCAAATCACATTTGTG
Found at i:62792085 original size:28 final size:28
Alignment explanation
Indices: 62791976--62792087 Score: 111
Period size: 28 Copynumber: 4.0 Consensus size: 28
62791966 ACATACCTAT
* *
62791976 ATATGGCCCACTAGGCCCAATCTCTTTC
1 ATATGGCCCACTAGGCCCAATCACATTC
* * *
62792004 ATATGGCTCA-TCAGGCCCATTCACATTT
1 ATATGGCCCACT-AGGCCCAATCACATTC
* * *
62792032 GTGTGGCCCATTAGGCCCAAATCACATTC
1 ATATGGCCCACTAGGCCC-AATCACATTC
62792061 ATATGG-CCACTAGGCCCAAATCACATT
1 ATATGGCCCACTAGGCCC-AATCACATT
62792088 TACAGTCATG
Statistics
Matches: 68, Mismatches: 13, Indels: 6
0.78 0.15 0.07
Matches are distributed among these distances:
27 1 0.01
28 54 0.79
29 13 0.19
ACGTcount: A:0.26, C:0.31, G:0.16, T:0.27
Consensus pattern (28 bp):
ATATGGCCCACTAGGCCCAATCACATTC
Found at i:62793583 original size:16 final size:16
Alignment explanation
Indices: 62793564--62793595 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
62793554 AATTTTGAGA
62793564 TTTCGAGATTTTTGGG
1 TTTCGAGATTTTTGGG
*
62793580 TTTCGGGATTTTTGGG
1 TTTCGAGATTTTTGGG
62793596 GCATTACAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.09, C:0.06, G:0.34, T:0.50
Consensus pattern (16 bp):
TTTCGAGATTTTTGGG
Found at i:62799533 original size:28 final size:27
Alignment explanation
Indices: 62799500--62799604 Score: 97
Period size: 28 Copynumber: 3.8 Consensus size: 27
62799490 AATCCACATA
62799500 TATATGGCCCACTAGGCCCAATCTCTT
1 TATATGGCCCACTAGGCCCAATCTCTT
* *
62799527 TCATATGGCCCA-TCAGGCCCATTCATATT
1 T-ATATGGCCCACT-AGGCCCAATC-TCTT
* * *
62799556 TATGTGGCCCATTAGGCCCAAATCACATT
1 TATATGGCCCACTAGGCCC-AATCTC-TT
*
62799585 TATATGG-CTACTAGGCCCAA
1 TATATGGCCCACTAGGCCCAA
62799605 ATCACATTTA
Statistics
Matches: 63, Mismatches: 9, Indels: 12
0.75 0.11 0.14
Matches are distributed among these distances:
27 4 0.06
28 43 0.68
29 16 0.25
ACGTcount: A:0.26, C:0.30, G:0.16, T:0.29
Consensus pattern (27 bp):
TATATGGCCCACTAGGCCCAATCTCTT
Found at i:62803854 original size:46 final size:46
Alignment explanation
Indices: 62803764--62803902 Score: 154
Period size: 46 Copynumber: 3.0 Consensus size: 46
62803754 TAAGTTTTTT
* * * *
62803764 TTAGTTTAAGTATTTAATGTGTCTTGAGTCTATTTAATATGTTCTAA
1 TTAGTTCAAGTATTTAATATGTCTTAAGT-TAATTAATATGTTCTAA
* *
62803811 TTAGATTC-AGTAATTAATATGTCTTAAGTTAATTAATGTGTTCTAA
1 TTAG-TTCAAGTATTTAATATGTCTTAAGTTAATTAATATGTTCTAA
** * *
62803857 TTAGTTCAACCATTTAACATGTCTTAAGTTTATTAAATATGTTCTA
1 TTAGTTCAAGTATTTAATATGTCTTAAGTTAATT-AATATGTTCTA
62803903 GTTAATACAA
Statistics
Matches: 77, Mismatches: 12, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
45 3 0.04
46 40 0.52
47 32 0.42
48 2 0.03
ACGTcount: A:0.32, C:0.09, G:0.12, T:0.47
Consensus pattern (46 bp):
TTAGTTCAAGTATTTAATATGTCTTAAGTTAATTAATATGTTCTAA
Found at i:62809149 original size:39 final size:39
Alignment explanation
Indices: 62809106--62809180 Score: 105
Period size: 39 Copynumber: 1.9 Consensus size: 39
62809096 CATGACTTTG
* * *
62809106 ACAAACTTTATAATCTACTTCTGCAATCATCCACATCTA
1 ACAAACTTTACAATCCACTTCTACAATCATCCACATCTA
* *
62809145 ACAAACTTTACAATCCACTTCTACATTCATGCACAT
1 ACAAACTTTACAATCCACTTCTACAATCATCCACAT
62809181 TAATCTTTAT
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
39 31 1.00
ACGTcount: A:0.36, C:0.29, G:0.03, T:0.32
Consensus pattern (39 bp):
ACAAACTTTACAATCCACTTCTACAATCATCCACATCTA
Found at i:62811996 original size:34 final size:34
Alignment explanation
Indices: 62811955--62812022 Score: 100
Period size: 34 Copynumber: 2.0 Consensus size: 34
62811945 ACTATACTAA
* * * *
62811955 ATTGGGCTAAGGCTCATACTGATACTGTTACTGT
1 ATTGGGCTAAGGCCCACACTGATAATGCTACTGT
62811989 ATTGGGCTAAGGCCCACACTGATAATGCTACTGT
1 ATTGGGCTAAGGCCCACACTGATAATGCTACTGT
62812023 TAAGGGCTTA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
34 30 1.00
ACGTcount: A:0.25, C:0.21, G:0.24, T:0.31
Consensus pattern (34 bp):
ATTGGGCTAAGGCCCACACTGATAATGCTACTGT
Found at i:62812030 original size:34 final size:34
Alignment explanation
Indices: 62811958--62812043 Score: 93
Period size: 34 Copynumber: 2.5 Consensus size: 34
62811948 ATACTAAATT
* * * * *
62811958 GGGCTAAGGCTCATACTGATACTGTTACTGTATT
1 GGGCTAAGGCCCAAACTGATAATGCTACTGTATA
*
62811992 GGGCTAAGGCCCACACTGATAATGCTACTGT-TAA
1 GGGCTAAGGCCCAAACTGATAATGCTACTGTAT-A
*
62812026 GGGCTTAGGCCCAAACTG
1 GGGCTAAGGCCCAAACTG
62812044 TTTGCACCGC
Statistics
Matches: 44, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
33 1 0.02
34 43 0.98
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.27
Consensus pattern (34 bp):
GGGCTAAGGCCCAAACTGATAATGCTACTGTATA
Found at i:62820274 original size:21 final size:21
Alignment explanation
Indices: 62820250--62820289 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
62820240 TGGTATTATG
*
62820250 TGTGGAAGTTAATTTGATGTT
1 TGTGGAAGTTAAGTTGATGTT
**
62820271 TGTGTTAGTTAAGTTGATG
1 TGTGGAAGTTAAGTTGATG
62820290 GTAAGAAAAT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.23, C:0.00, G:0.30, T:0.47
Consensus pattern (21 bp):
TGTGGAAGTTAAGTTGATGTT
Found at i:62820861 original size:78 final size:78
Alignment explanation
Indices: 62820732--62820888 Score: 314
Period size: 78 Copynumber: 2.0 Consensus size: 78
62820722 TGTGACACAC
62820732 TGCCAGGCGACACGGCTGTGTGTCCCTTGTAGCTTTCAAATGGTTACAAGTCAGGTTTGTAATGC
1 TGCCAGGCGACACGGCTGTGTGTCCCTTGTAGCTTTCAAATGGTTACAAGTCAGGTTTGTAATGC
62820797 CCCAAAATCTAAG
66 CCCAAAATCTAAG
62820810 TGCCAGGCGACACGGCTGTGTGTCCCTTGTAGCTTTCAAATGGTTACAAGTCAGGTTTGTAATGC
1 TGCCAGGCGACACGGCTGTGTGTCCCTTGTAGCTTTCAAATGGTTACAAGTCAGGTTTGTAATGC
62820875 CCCAAAATCTAAG
66 CCCAAAATCTAAG
62820888 T
1 T
62820889 ATTTATTTTT
Statistics
Matches: 79, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
78 79 1.00
ACGTcount: A:0.24, C:0.23, G:0.24, T:0.29
Consensus pattern (78 bp):
TGCCAGGCGACACGGCTGTGTGTCCCTTGTAGCTTTCAAATGGTTACAAGTCAGGTTTGTAATGC
CCCAAAATCTAAG
Found at i:62822861 original size:54 final size:54
Alignment explanation
Indices: 62822801--62822927 Score: 182
Period size: 54 Copynumber: 2.4 Consensus size: 54
62822791 ATAAACATAC
* * *
62822801 ATCACATAGGGGCAATACAATCATCTTACCATATAAGGGAAAAATAGTTATTTT
1 ATCACATAAGGGCAAAACAATCATCTTACCATATAAGGGAAAAATAGTCATTTT
* * *
62822855 ATCACATAAGGGCAAAACATTCATTTTACCATATAAGGGCAAAATAGTCATTTT
1 ATCACATAAGGGCAAAACAATCATCTTACCATATAAGGGAAAAATAGTCATTTT
* *
62822909 ACCACATAAGCGCAAAACA
1 ATCACATAAGGGCAAAACA
62822928 GACATTTTAT
Statistics
Matches: 65, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
54 65 1.00
ACGTcount: A:0.43, C:0.18, G:0.13, T:0.26
Consensus pattern (54 bp):
ATCACATAAGGGCAAAACAATCATCTTACCATATAAGGGAAAAATAGTCATTTT
Found at i:62822933 original size:27 final size:27
Alignment explanation
Indices: 62822803--62822936 Score: 142
Period size: 27 Copynumber: 5.0 Consensus size: 27
62822793 AAACATACAT
* * * *
62822803 CACATAGGGGCAATACAATCATCTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
* * * * *
62822830 CATATAAGGGAAAAATAGTTATTTTAT
1 CACATAAGGGCAAAACAGTCATTTTAC
*
62822857 CACATAAGGGCAAAACATTCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
* *
62822884 CATATAAGGGCAAAATAGTCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
* *
62822911 CACATAAGCGCAAAACAGACATTTTA
1 CACATAAGGGCAAAACAGTCATTTTA
62822937 TCGATTAAGG
Statistics
Matches: 85, Mismatches: 22, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
27 85 1.00
ACGTcount: A:0.42, C:0.18, G:0.13, T:0.27
Consensus pattern (27 bp):
CACATAAGGGCAAAACAGTCATTTTAC
Found at i:62830790 original size:39 final size:40
Alignment explanation
Indices: 62830742--62830838 Score: 133
Period size: 39 Copynumber: 2.5 Consensus size: 40
62830732 GAGTTAACAG
* *
62830742 AGTATAAACAGGGGCACGAATGTGCATTCA-GGGTATCGA
1 AGTACAAACAGGGGCACGAATGTGCATTCAGGGGTACCGA
* * *
62830781 AGTACAAACAGGAGCACGTATGTGCATTTAGGGGTACCGA
1 AGTACAAACAGGGGCACGAATGTGCATTCAGGGGTACCGA
*
62830821 AGTACAAACAAGGGCACG
1 AGTACAAACAGGGGCACG
62830839 TGTACAATAA
Statistics
Matches: 50, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
39 26 0.52
40 24 0.48
ACGTcount: A:0.35, C:0.18, G:0.30, T:0.18
Consensus pattern (40 bp):
AGTACAAACAGGGGCACGAATGTGCATTCAGGGGTACCGA
Found at i:62834266 original size:43 final size:42
Alignment explanation
Indices: 62834218--62834383 Score: 156
Period size: 43 Copynumber: 3.9 Consensus size: 42
62834208 GTTATCGAGA
* * *
62834218 TGTGATTACATGTAAGAACATGTTTGGGACATTGGCATTGTAT
1 TGTGATTAC-TGTAAGACCATGTCTGGGACATTGGCATTATAT
* *
62834261 TGTGATTACGGTAAGACCATGTCTAGGACATTGGCATTATAT
1 TGTGATTACTGTAAGACCATGTCTGGGACATTGGCATTATAT
* * * * *
62834303 TATGATTTCGTGTAAGACCCTGTCTGGGACAGTGGCATCA-AT
1 TGTGATTAC-TGTAAGACCATGTCTGGGACATTGGCATTATAT
* * * *
62834345 ATATGATAACATGTAAGACCATATCTGGGATA-TGGCATT
1 -TGTGATTAC-TGTAAGACCATGTCTGGGACATTGGCATT
62834384 GTGCGAGCTT
Statistics
Matches: 102, Mismatches: 19, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
42 43 0.42
43 59 0.58
ACGTcount: A:0.29, C:0.14, G:0.24, T:0.33
Consensus pattern (42 bp):
TGTGATTACTGTAAGACCATGTCTGGGACATTGGCATTATAT
Found at i:62838166 original size:19 final size:19
Alignment explanation
Indices: 62838139--62838186 Score: 87
Period size: 19 Copynumber: 2.5 Consensus size: 19
62838129 TTTTGGGCTT
*
62838139 AATGCGCCGAAAACGGGCC
1 AATGGGCCGAAAACGGGCC
62838158 AATGGGCCGAAAACGGGCC
1 AATGGGCCGAAAACGGGCC
62838177 AATGGGCCGA
1 AATGGGCCGA
62838187 CTTTGGTAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.31, C:0.27, G:0.35, T:0.06
Consensus pattern (19 bp):
AATGGGCCGAAAACGGGCC
Found at i:62841226 original size:33 final size:33
Alignment explanation
Indices: 62841179--62841245 Score: 116
Period size: 33 Copynumber: 2.0 Consensus size: 33
62841169 ATAAACTGCA
62841179 TAGAGATGTGCCTATAGAAACTCAAGGAAAAGT
1 TAGAGATGTGCCTATAGAAACTCAAGGAAAAGT
* *
62841212 TAGAGATTTTCCTATAGAAACTCAAGGAAAAGT
1 TAGAGATGTGCCTATAGAAACTCAAGGAAAAGT
62841245 T
1 T
62841246 TTCTCTGGAT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.42, C:0.12, G:0.21, T:0.25
Consensus pattern (33 bp):
TAGAGATGTGCCTATAGAAACTCAAGGAAAAGT
Found at i:62844869 original size:26 final size:26
Alignment explanation
Indices: 62844809--62844870 Score: 63
Period size: 26 Copynumber: 2.3 Consensus size: 26
62844799 TTTTACTGAA
*
62844809 ATACCCCTAAGTATGAAAATTACCATT
1 ATACCCCTAAG-ATGAAAATAACCATT
* * *
62844836 TTAACCCTAAG-TGCAAAATAACCGTT
1 ATACCCCTAAGATG-AAAATAACCATT
62844862 ATACCCCTA
1 ATACCCCTA
62844871 GGGTTAATTT
Statistics
Matches: 28, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
25 2 0.07
26 17 0.61
27 9 0.32
ACGTcount: A:0.39, C:0.26, G:0.08, T:0.27
Consensus pattern (26 bp):
ATACCCCTAAGATGAAAATAACCATT
Found at i:62845319 original size:28 final size:28
Alignment explanation
Indices: 62845227--62845326 Score: 72
Period size: 27 Copynumber: 3.7 Consensus size: 28
62845217 ACTTGTAATG
* * *
62845227 GGGCTACGGCCCAGATTGATACTGATAT
1 GGGCTAAGGCCCAGATTAATATTGATAT
62845255 GGGCT-AGGCCCA-A-T-ATACTCTGATACT
1 GGGCTAAGGCCCAGATTAATA-T-TGATA-T
62845282 --G-TAAATGGCCCAGATTAATATTGATAT
1 GGGCT-AA-GGCCCAGATTAATATTGATAT
62845309 GGGCTAAGGCCCAG-TTAA
1 GGGCTAAGGCCCAGATTAA
62845327 CACTAAATTC
Statistics
Matches: 58, Mismatches: 2, Indels: 25
0.68 0.02 0.29
Matches are distributed among these distances:
24 4 0.07
25 2 0.03
26 7 0.12
27 18 0.31
28 18 0.31
29 5 0.09
30 4 0.07
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.26
Consensus pattern (28 bp):
GGGCTAAGGCCCAGATTAATATTGATAT
Found at i:62846149 original size:16 final size:17
Alignment explanation
Indices: 62846117--62846149 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
62846107 CATCAAGAAG
62846117 GGTTTTCAATGAAAACAT
1 GGTTTTCAA-GAAAACAT
62846135 GGTTTTCAA-AAAACA
1 GGTTTTCAAGAAAACA
62846150 CTTTAATGTG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.42, C:0.12, G:0.15, T:0.30
Consensus pattern (17 bp):
GGTTTTCAAGAAAACAT
Found at i:62849746 original size:26 final size:27
Alignment explanation
Indices: 62849717--62849776 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 27
62849707 CCACATATAT
*
62849717 ATATCTGT-TCTGGTGGCCTAGCCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
* * *
62849743 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
62849770 ATATCTG
1 ATATCTG
62849777 GCAGCCTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (27 bp):
ATATCTGTATCTGGTGACCTAGCCACA
Found at i:62853268 original size:43 final size:42
Alignment explanation
Indices: 62853207--62853324 Score: 121
Period size: 43 Copynumber: 2.7 Consensus size: 42
62853197 TCATATATCG
* * * *
62853207 ATGTCCCAGATAGGGTCTTACCTGAAATCATAATACGATGCCA
1 ATGTCCCAGACACGGTCTTA-CTGAAATCACAATACAATGCCA
* *
62853250 ATGTCCTAGACACGGTCTTA-TACATAATCACAATACAATGCCA
1 ATGTCCCAGACACGGTCTTACT-GA-AATCACAATACAATGCCA
* *
62853293 ATGTCCCAGACATGGTCTTACATGTAATCACA
1 ATGTCCCAGACACGGTCTTAC-TGAAATCACA
62853325 TCTAGATAAC
Statistics
Matches: 61, Mismatches: 10, Indels: 8
0.77 0.13 0.10
Matches are distributed among these distances:
41 1 0.02
42 1 0.02
43 58 0.95
45 1 0.02
ACGTcount: A:0.34, C:0.25, G:0.15, T:0.26
Consensus pattern (42 bp):
ATGTCCCAGACACGGTCTTACTGAAATCACAATACAATGCCA
Found at i:62858116 original size:40 final size:40
Alignment explanation
Indices: 62858063--62858277 Score: 182
Period size: 40 Copynumber: 5.3 Consensus size: 40
62858053 AGCCCTCGTT
*
62858063 CAAATGACGCTTCGGGACAT-AGCCC-G-TTATAGTAATTCGGCA
1 CAAATG-C-CTTCGGGACATAAGCCCGGATT-TAGT-ACTC-GCA
*
62858105 CAAATGCCTTCGGGACTTAAGCCCGGATTTAGTACTCGCA
1 CAAATGCCTTCGGGACATAAGCCCGGATTTAGTACTCGCA
* *
62858145 CAAATGCCTTCGGG-CTTAAG-CCGGAATTAGGTATCTCGCA
1 CAAATGCCTTCGGGACATAAGCCCGGATTTA-GTA-CTCGCA
*
62858185 CAAATTGCCTTCGGG-C-T-AGCCCGGAAATTAGTAATCTCGCA
1 CAAA-TGCCTTCGGGACATAAGCCCGG-ATTTAGT-A-CTCGCA
*
62858226 CAAATG-CTTCGGG-C-TTAGCCCGGAATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAAGCCCGG-ATTTAGTA-CTCGCA
62858265 CAAATGCCTTCGG
1 CAAATGCCTTCGG
62858278 ATCTTAGTCC
Statistics
Matches: 158, Mismatches: 4, Indels: 24
0.85 0.02 0.13
Matches are distributed among these distances:
38 8 0.05
39 34 0.22
40 66 0.42
41 37 0.23
42 11 0.07
43 2 0.01
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAAGCCCGGATTTAGTACTCGCA
Found at i:62858261 original size:39 final size:40
Alignment explanation
Indices: 62858102--62858295 Score: 247
Period size: 40 Copynumber: 4.8 Consensus size: 40
62858092 TAGTAATTCG
62858102 GCACAAATGCCTTCGGGACTTAAGCCCGG-ATTTAGTA-CTC
1 GCACAAATGCCTTCGGG-CTT-AGCCCGGAATTTAGTATCTC
62858142 GCACAAATGCCTTCGGGCTTAAG-CCGGAA-TTAGGTATCTC
1 GCACAAATGCCTTCGGGCTT-AGCCCGGAATTTA-GTATCTC
*
62858182 GCACAAATTGCCTTCGGGC-TAGCCCGGAAATTAGTAATCTC
1 GCACAAA-TGCCTTCGGGCTTAGCCCGGAATTTAGT-ATCTC
62858223 GCACAAATG-CTTCGGGCTTAGCCCGGAATTTAGTATCTC
1 GCACAAATGCCTTCGGGCTTAGCCCGGAATTTAGTATCTC
* *
62858262 GCACAAATGCCTTCGGATCTTAGTCCGGATATTT
1 GCACAAATGCCTTCGG-GCTTAGCCCGGA-ATTT
62858296 GTCACTTAGC
Statistics
Matches: 140, Mismatches: 3, Indels: 20
0.86 0.02 0.12
Matches are distributed among these distances:
38 7 0.05
39 34 0.24
40 59 0.42
41 36 0.26
42 4 0.03
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.27
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGCTTAGCCCGGAATTTAGTATCTC
Found at i:62858318 original size:80 final size:79
Alignment explanation
Indices: 62858102--62858330 Score: 254
Period size: 81 Copynumber: 2.8 Consensus size: 79
62858092 TAGTAATTCG
62858102 GCACAAATGCCTTCGGGACTTAAGCCCGGAT-TTAGTAC-TCGCACAAATGCCTTCGGGCTTAAG
1 GCACAAATGCCTTC-GGACTT-AGCCCGGATATTAGTACTTCGCACAAATGCC-TCGGGCTT-AG
62858165 -CCGGAATTAGGTATCTC
62 CCCGGAATTAGGTATCTC
* * * *
62858182 GCACAAATTGCCTTCGGGC-TAGCCCGGAAATTAGTAATCTCGCACAAATGCTTCGGGCTTAGCC
1 GCACAAA-TGCCTTCGGACTTAGCCCGGATATTAGTACT-TCGCACAAATGCCTCGGGCTTAGCC
62858246 CGGAATTTA-GTATCTC
64 CGGAA-TTAGGTATCTC
* * * *
62858262 GCACAAATGCCTTCGGATCTTAGTCCGGATATTTGTCACTTAGCACAGA-GCCTCGGGACTTAGC
1 GCACAAATGCCTTCGGA-CTTAGCCCGGATATTAGT-ACTTCGCACAAATGCCTCGGG-CTTAGC
62858326 CCGGA
63 CCGGA
62858331 CATCATTCAA
Statistics
Matches: 127, Mismatches: 12, Indels: 19
0.80 0.08 0.12
Matches are distributed among these distances:
78 8 0.06
79 18 0.14
80 46 0.36
81 53 0.42
82 2 0.02
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (79 bp):
GCACAAATGCCTTCGGACTTAGCCCGGATATTAGTACTTCGCACAAATGCCTCGGGCTTAGCCCG
GAATTAGGTATCTC
Found at i:62865978 original size:39 final size:39
Alignment explanation
Indices: 62865883--62866142 Score: 325
Period size: 39 Copynumber: 6.6 Consensus size: 39
62865873 TTGAATGATG
*
62865883 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGA-T-ACTAAT
* *
62865921 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
62865962 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
62866001 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
* *
62866040 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
* *
62866079 TCCGGGTTAAGTCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGA-TACTAAT
* * *
62866117 AACCGGGCTATGTCCGAAGGCATTTG
1 -TCCGGGCTAAGCCCGAAGGCATTTG
62866143 AACGAGGAGC
Statistics
Matches: 200, Mismatches: 15, Indels: 12
0.88 0.07 0.05
Matches are distributed among these distances:
38 1 0.00
39 175 0.88
40 12 0.06
41 11 0.05
42 1 0.00
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:62866172 original size:78 final size:78
Alignment explanation
Indices: 62865929--62866175 Score: 261
Period size: 78 Copynumber: 3.2 Consensus size: 78
62865919 ATATCCGGAC
* **
62865929 TAAGATCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGA
1 TAAG-TCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAG-
* * *
62865994 T-ACTAATTCCGGGC
64 TGACTAAATCCGAGT
* * ** *
62866008 TAAGCCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTT
1 TAAGTCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTG
*
62866073 ACTAAATCCGGGT
66 ACTAAATCCGAGT
* *
62866086 TAAGTCCGAAGGCATTTGTGCGA-ATTACT-ATAACCGGGCTATGTCCGAAGGCATTTGAACGAG
1 TAAGTCCGAAGGCATTTGTGCGAGA-TACTAAT-ACCGGGCTAAGCCCGAAGGCATTTGAACGAG
*
62866149 -GAGCTATATCC-AGT
64 TGA-CTAAATCCGAGT
*
62866163 TAAATTCCGAAGG
1 T-AAGTCCGAAGG
62866176 TACGTGATTT
Statistics
Matches: 150, Mismatches: 13, Indels: 11
0.86 0.07 0.06
Matches are distributed among these distances:
77 8 0.05
78 138 0.92
79 4 0.03
ACGTcount: A:0.28, C:0.21, G:0.27, T:0.25
Consensus pattern (78 bp):
TAAGTCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTG
ACTAAATCCGAGT
Found at i:62872712 original size:39 final size:40
Alignment explanation
Indices: 62872622--62872770 Score: 168
Period size: 39 Copynumber: 3.8 Consensus size: 40
62872612 ATATAAACTC
* *
62872622 GCAC-AATGCCTTCGGG-CTTAAACCCGGATATTGTCACTA
1 GCACAAATGCCTTCGGGACTT-AGCCCGGATATAGTCACTA
*
62872661 GCATAAATGCCTTCGGGA-TTACGCCCGGATATAGTC-CTA
1 GCACAAATGCCTTCGGGACTTA-GCCCGGATATAGTCACTA
* *
62872700 GCACAAATGCCTTC-GGATCTTAGTCCGGAT-TAGTCGCTTA
1 GCACAAATGCCTTCGGGA-CTTAGCCCGGATATAGTCAC-TA
62872740 GCACAAA-GCCTTCGGGACTTAGCCCGGATAT
1 GCACAAATGCCTTCGGGACTTAGCCCGGATAT
62872771 CATTCGATAA
Statistics
Matches: 95, Mismatches: 6, Indels: 17
0.81 0.05 0.14
Matches are distributed among these distances:
38 8 0.08
39 45 0.47
40 42 0.44
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTA
Found at i:62873161 original size:40 final size:37
Alignment explanation
Indices: 62873119--62873191 Score: 114
Period size: 37 Copynumber: 2.0 Consensus size: 37
62873109 AACTCCTTCC
62873119 TCCTCCTT--TTAGAATTTTTCGGCCAAAAGAAATGAAT
1 TCCTCCTTCCTTAGAA-TTTTCGG-CAAAAGAAATGAAT
62873156 TCCTCCTTCCTTAGAATTTTCGGCAAAAGAAATGAA
1 TCCTCCTTCCTTAGAATTTTCGGCAAAAGAAATGAA
62873192 AAGGATGAAC
Statistics
Matches: 34, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
37 21 0.62
38 7 0.21
39 6 0.18
ACGTcount: A:0.33, C:0.21, G:0.14, T:0.33
Consensus pattern (37 bp):
TCCTCCTTCCTTAGAATTTTCGGCAAAAGAAATGAAT
Found at i:62879868 original size:40 final size:40
Alignment explanation
Indices: 62879821--62879965 Score: 175
Period size: 40 Copynumber: 3.6 Consensus size: 40
62879811 CTCGCACAAG
* * * * *
62879821 GCCTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
*
62879861 GCCTTCGGGACTTAGCCCGAATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* * * *
62879901 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCGCAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
62879942 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
62879966 CATTCGAGTA
Statistics
Matches: 89, Mismatches: 13, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
39 3 0.03
40 57 0.64
41 26 0.29
42 3 0.03
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:62880360 original size:38 final size:38
Alignment explanation
Indices: 62880318--62880393 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
62880308 CAAGAACTCC
62880318 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
1 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
62880356 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
1 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
62880394 AAAGGATGAG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.32, C:0.24, G:0.13, T:0.32
Consensus pattern (38 bp):
TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
Found at i:62882635 original size:70 final size:71
Alignment explanation
Indices: 62882506--62882646 Score: 266
Period size: 70 Copynumber: 2.0 Consensus size: 71
62882496 CTATTCTATC
*
62882506 TACGAGTAAGTTCACATGCAAATAAATTTCTTTAAGTTGATTTATAAATGTTTATTTGTCATTGA
1 TACGAGTAAGTTCACATGCAAATAAATTTCTTTAAGTTGATTGATAAATGTTTATTTGTCATTGA
62882571 ATTGCT
66 ATTGCT
62882577 TACGAGTAAGTTCACATGCAAATAAATTT-TTTAAGTTGATTGATAAATGTTTATTTGTCATTGA
1 TACGAGTAAGTTCACATGCAAATAAATTTCTTTAAGTTGATTGATAAATGTTTATTTGTCATTGA
62882641 ATTGCT
66 ATTGCT
62882647 ATGAATGCTA
Statistics
Matches: 69, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
70 40 0.58
71 29 0.42
ACGTcount: A:0.33, C:0.09, G:0.15, T:0.43
Consensus pattern (71 bp):
TACGAGTAAGTTCACATGCAAATAAATTTCTTTAAGTTGATTGATAAATGTTTATTTGTCATTGA
ATTGCT
Found at i:62882811 original size:43 final size:43
Alignment explanation
Indices: 62882765--62882920 Score: 179
Period size: 43 Copynumber: 3.6 Consensus size: 43
62882755 TATCGAGATG
* *
62882765 TGATTACATGTAAGACCATATCTGGGACATTGGCATTGTATTG
1 TGATTACATGTAAGACCATATCTGGGACATTGGCATCGTATTA
* * * *
62882808 TGATTACGTGTAAGACCATGTCTGAGACATTGTCATCGTATTA
1 TGATTACATGTAAGACCATATCTGGGACATTGGCATCGTATTA
* * * * *
62882851 TGATTTCGTGTAAGACCCTTTCTGGGACAGTGGCATCG-ATATA
1 TGATTACATGTAAGACCATATCTGGGACATTGGCATCGTAT-TA
* *
62882894 TGATAACATGTAAGACCTTATCTGGGA
1 TGATTACATGTAAGACCATATCTGGGA
62882921 TAGGGCATTG
Statistics
Matches: 95, Mismatches: 17, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
42 2 0.02
43 93 0.98
ACGTcount: A:0.28, C:0.16, G:0.23, T:0.33
Consensus pattern (43 bp):
TGATTACATGTAAGACCATATCTGGGACATTGGCATCGTATTA
Found at i:62889083 original size:46 final size:45
Alignment explanation
Indices: 62889030--62889205 Score: 185
Period size: 46 Copynumber: 3.8 Consensus size: 45
62889020 TATTTGGGCA
*
62889030 TCCGAACTCGTTGAGTGGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * *** * *
62889076 TCCGAACTCATTGAGTTGAGTCTGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
*
62889123 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
62889169 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
62889206 GCGGGTTACA
Statistics
Matches: 106, Mismatches: 17, Indels: 14
0.77 0.12 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 66 0.62
47 30 0.28
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.30, T:0.28
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:62889144 original size:93 final size:93
Alignment explanation
Indices: 62889026--62889197 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
62889016 AGGATATTTG
* *
62889026 GGCATCCGAACTCGTTGAGTGGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCATTGAG
1 GGCATCCGAACTCGTTGAGTGGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAG
*
62889091 TTGAGTCTGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* * * *
62889119 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTGGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAG
62889184 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
62889198 ACTTATGGGC
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.21, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTGGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:62891850 original size:43 final size:43
Alignment explanation
Indices: 62891798--62891926 Score: 188
Period size: 43 Copynumber: 3.0 Consensus size: 43
62891788 AGCTGTGAAT
* *
62891798 AATATTATCGGGCTTCGAGCCTAGCAGGCTATAATACCGGTGA
1 AATAATATCGGGCTTCGAGCCTAGCAGGCTATAATGCCGGTGA
* *
62891841 GATAATATCGGGCTTCGGGCCTAGCAGGCTATAATGCCGGTGA
1 AATAATATCGGGCTTCGAGCCTAGCAGGCTATAATGCCGGTGA
* * *
62891884 AATGATATCGGGCTTCAAGCCTAGCAGGCGA-AATGCCGGTGA
1 AATAATATCGGGCTTCGAGCCTAGCAGGCTATAATGCCGGTGA
62891926 A
1 A
62891927 TGAGTTCAGA
Statistics
Matches: 77, Mismatches: 9, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
42 12 0.16
43 65 0.84
ACGTcount: A:0.27, C:0.21, G:0.29, T:0.22
Consensus pattern (43 bp):
AATAATATCGGGCTTCGAGCCTAGCAGGCTATAATGCCGGTGA
Found at i:62892007 original size:40 final size:41
Alignment explanation
Indices: 62891805--62892006 Score: 158
Period size: 43 Copynumber: 4.9 Consensus size: 41
62891795 AATAATATTA
** *
62891805 TCGGGCTTCGAGCCTAGCAGGCTATAATACCGGTGAGAT-AAT
1 TCGGGCTTAAAGCCTAGCAGGCTA-AATGCCGGTGA-ATGAAT
***
62891847 ATCGGGCTTCGGGCCTAGCAGGCTATAATGCCGGTGAAATG-AT
1 -TCGGGCTTAAAGCCTAGCAGGCTA-AATGCCGGTG-AATGAAT
* * *
62891890 ATCGGGCTTCAAGCCTAGCAGGCGAAATGCCGGTGAATGAGT
1 -TCGGGCTTAAAGCCTAGCAGGCTAAATGCCGGTGAATGAAT
* * * *** *
62891932 TCAGACTTAAAGTCTAGCAGGCTTCGTGCTGGTG-ATGAAT
1 TCGGGCTTAAAGCCTAGCAGGCTAAATGCCGGTGAATGAAT
* * *
62891972 TTGGGTTTAAAACCTAGCAGGCTAAATGCCGGTGA
1 TCGGGCTTAAAGCCTAGCAGGCTAAATGCCGGTGA
62892007 TTTGATAAAA
Statistics
Matches: 129, Mismatches: 26, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
40 29 0.22
41 29 0.22
42 11 0.09
43 59 0.46
44 1 0.01
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.24
Consensus pattern (41 bp):
TCGGGCTTAAAGCCTAGCAGGCTAAATGCCGGTGAATGAAT
Found at i:62898017 original size:44 final size:42
Alignment explanation
Indices: 62897967--62898114 Score: 133
Period size: 44 Copynumber: 3.5 Consensus size: 42
62897957 TGTGTTTTTT
*
62897967 TGTAAGACCACGTCTGGGACATTGGCATCG-ACTTAT-ATTTTACG
1 TGTAAGACCACGTCTGGGACATTGGCATCGTA-TT-TGA-CTT-CG
* *
62898011 TGTAAGACCATGTCTGGGACATTGACATCGTATTTGACTTCG
1 TGTAAGACCACGTCTGGGACATTGGCATCGTATTTGACTTCG
* * * *
62898053 TGTAAGACC-CTGTCTGGGACAGTGGCATTGATGTTTGA-TTACA
1 TGTAAGACCAC-GTCTGGGACATTGGCATCG-TATTTGACTT-CG
*
62898096 TGTAAGACCACATCTGGGA
1 TGTAAGACCACGTCTGGGA
62898115 TGTTGCCATT
Statistics
Matches: 88, Mismatches: 10, Indels: 13
0.79 0.09 0.12
Matches are distributed among these distances:
42 29 0.33
43 26 0.30
44 32 0.36
45 1 0.01
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.31
Consensus pattern (42 bp):
TGTAAGACCACGTCTGGGACATTGGCATCGTATTTGACTTCG
Found at i:62900720 original size:56 final size:55
Alignment explanation
Indices: 62900593--62900832 Score: 250
Period size: 56 Copynumber: 4.3 Consensus size: 55
62900583 ATGTATATGA
* * * * * *
62900593 GGCATCGACATGTGATTCCGATATATGTGTGCAAGAAAGACCA-CTTTTATACATC
1 GGCATCGATATGTGATT-CGATATATGTGTGCGAGTAAGACCATGTTTTATACGTT
* *
62900648 AGCATCGATATGTGATTCTGATATATGTGTGCGAGTAAGACCATGTTTTATGCGTT
1 GGCATCGATATGTGATTC-GATATATGTGTGCGAGTAAGACCATGTTTTATACGTT
* *
62900704 GGCATCGATATGTGATTACGATATATGTTTGCGAGTAAGACCACGTTTTATACGTT
1 GGCATCGATATGTGATT-CGATATATGTGTGCGAGTAAGACCATGTTTTATACGTT
* * * * * * ***
62900760 AGCATCGATATATGACTCGGATATATTTGTGTGAGTAAGACCCTGTTTGGGACAG-T
1 GGCATCGATATGTGATTC-GATATATGTGTGCGAGTAAGACCATGTTTTATAC-GTT
62900816 GGCATCGATATGTGATT
1 GGCATCGATATGTGATT
62900833 ACATGTAAGA
Statistics
Matches: 154, Mismatches: 26, Indels: 9
0.81 0.14 0.05
Matches are distributed among these distances:
54 1 0.01
55 38 0.25
56 113 0.73
57 2 0.01
ACGTcount: A:0.27, C:0.15, G:0.24, T:0.34
Consensus pattern (55 bp):
GGCATCGATATGTGATTCGATATATGTGTGCGAGTAAGACCATGTTTTATACGTT
Found at i:62900799 original size:112 final size:111
Alignment explanation
Indices: 62900593--62900834 Score: 308
Period size: 112 Copynumber: 2.2 Consensus size: 111
62900583 ATGTATATGA
* *
62900593 GGCATCGACATGTGATTCCGATATATGTGTGCAAGAAAGACCACTTTTATACATCAGCATCGATA
1 GGCATCGATATGTGATTACGATATATGTGTGCAAGAAAGACCACTTTTATACATCAGCATCGATA
* * * *
62900658 TGTGATTCTGATATATGTGTGCGAGTAAGACCATGTTTTATG-C-GTT
66 TATGACTCGGATATATGTGTGCGAGTAAGACCATG-TTTAGGACAG-T
* * * * *
62900704 GGCATCGATATGTGATTACGATATATGTTTGCGAGTAAGACCACGTTTTATACGTTAGCATCGAT
1 GGCATCGATATGTGATTACGATATATGTGTGCAAGAAAGACCAC-TTTTATACATCAGCATCGAT
* * * *
62900769 ATATGACTCGGATATATTTGTGTGAGTAAGACCCTGTTTGGGACAGT
65 ATATGACTCGGATATATGTGTGCGAGTAAGACCATGTTTAGGACAGT
62900816 GGCATCGATATGTGATTAC
1 GGCATCGATATGTGATTAC
62900835 ATGTAAGACC
Statistics
Matches: 113, Mismatches: 15, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
111 43 0.38
112 69 0.61
113 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.24, T:0.33
Consensus pattern (111 bp):
GGCATCGATATGTGATTACGATATATGTGTGCAAGAAAGACCACTTTTATACATCAGCATCGATA
TATGACTCGGATATATGTGTGCGAGTAAGACCATGTTTAGGACAGT
Found at i:62903122 original size:40 final size:41
Alignment explanation
Indices: 62903053--62903146 Score: 106
Period size: 40 Copynumber: 2.3 Consensus size: 41
62903043 GTTGGTATCG
*
62903053 CACACTTAGTGCC-TTATATATCTGAAGCTAT-TCCAACTCA
1 CACACTTAGTGCCATTATATATCTGAAGCTATATCAAAC-CA
* * *
62903093 CACACTTAGTGCCATT-TGTAGTC-GGAGCTATATTAAACCA
1 CACACTTAGTGCCATTATATA-TCTGAAGCTATATCAAACCA
62903133 CACACTTAGTGCCA
1 CACACTTAGTGCCA
62903147 AGCATAGTCG
Statistics
Matches: 47, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
40 39 0.83
41 8 0.17
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (41 bp):
CACACTTAGTGCCATTATATATCTGAAGCTATATCAAACCA
Found at i:62907240 original size:56 final size:56
Alignment explanation
Indices: 62907180--62907387 Score: 310
Period size: 56 Copynumber: 3.7 Consensus size: 56
62907170 GAGATAGGAT
* * * * * *
62907180 CTTACTCGTAAACACATATCAGGATCACATATCGATGCCAACGTATGAAACATGGA
1 CTTACTCGCACACATATATCAGAATCACATATCGATGCCAACGTATTAAACGTGGA
*
62907236 CTTACTCGCACACATATATCAGAATCACATATCGATGCCAACATATTAAACGTGGA
1 CTTACTCGCACACATATATCAGAATCACATATCGATGCCAACGTATTAAACGTGGA
* * *
62907292 CTTACTCGCACACATATATCAGAATCACATATCAATGTCAACGTATTAAACGTGGT
1 CTTACTCGCACACATATATCAGAATCACATATCGATGCCAACGTATTAAACGTGGA
62907348 CTTACTCGCACACATATATCA-AAGTCACATATCGATGCCA
1 CTTACTCGCACACATATATCAGAA-TCACATATCGATGCCA
62907388 CATATTCTTC
Statistics
Matches: 138, Mismatches: 13, Indels: 2
0.90 0.08 0.01
Matches are distributed among these distances:
55 2 0.01
56 136 0.99
ACGTcount: A:0.37, C:0.25, G:0.13, T:0.25
Consensus pattern (56 bp):
CTTACTCGCACACATATATCAGAATCACATATCGATGCCAACGTATTAAACGTGGA
Found at i:62908438 original size:21 final size:21
Alignment explanation
Indices: 62908414--62908454 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
62908404 CATGGCTTAT
* * *
62908414 TATTATTTTATGATATATATA
1 TATTATATTATAACATATATA
62908435 TATTATATTATAACATATAT
1 TATTATATTATAACATATAT
62908455 TAATTTAATG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.41, C:0.02, G:0.02, T:0.54
Consensus pattern (21 bp):
TATTATATTATAACATATATA
Found at i:62911032 original size:50 final size:49
Alignment explanation
Indices: 62910914--62911089 Score: 237
Period size: 50 Copynumber: 3.5 Consensus size: 49
62910904 CTGGTACGCA
* * *
62910914 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCAGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCTAGTACACG
**
62910963 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCT-GATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC-AATTATCTAG-TACACG
* * *
62911013 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCTAGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATCTAGTACACG
62911064 TAGTAGCCTGCACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
62911090 TGCGACCTCA
Statistics
Matches: 112, Mismatches: 10, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
49 32 0.29
50 44 0.39
51 35 0.31
52 1 0.01
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.26
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCTAGTACACG
Found at i:62911097 original size:101 final size:99
Alignment explanation
Indices: 62910914--62911097 Score: 278
Period size: 101 Copynumber: 1.8 Consensus size: 99
62910904 CTGGTACGCA
* *
62910914 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCAGTACACGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCAGTACACATAGTAGCCTGCACTTA
*
62910979 GTACTACACACGTGACCTAACCATCTGATACACG
66 GTACTACACACGCGACCTAACCATCTGATACACG
* * * *
62911013 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCTAGTACGCATAGTAGCCTGCACT
1 TAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-TTATCCAGTACACATAGTAGCCTGCACT
*
62911078 TAGTACTACACATGCGACCT
64 TAGTACTACACACGCGACCT
62911098 CACAATAGAT
Statistics
Matches: 75, Mismatches: 8, Indels: 2
0.88 0.09 0.02
Matches are distributed among these distances:
99 29 0.39
100 3 0.04
101 43 0.57
ACGTcount: A:0.29, C:0.28, G:0.17, T:0.26
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCAGTACACATAGTAGCCTGCACTTA
GTACTACACACGCGACCTAACCATCTGATACACG
Done.