Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 194 of 349
Found at i:62913898 original size:15 final size:16
Alignment explanation
Indices: 62913869--62913902 Score: 61
Period size: 15 Copynumber: 2.2 Consensus size: 16
62913859 AACAGAGAAG
62913869 CCAAGAATAAAGAAAT
1 CCAAGAATAAAGAAAT
62913885 CCAA-AATAAAGAAAT
1 CCAAGAATAAAGAAAT
62913900 CCA
1 CCA
62913903 TGATACCAGA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 14 0.78
16 4 0.22
ACGTcount: A:0.62, C:0.18, G:0.09, T:0.12
Consensus pattern (16 bp):
CCAAGAATAAAGAAAT
Found at i:62916601 original size:50 final size:49
Alignment explanation
Indices: 62916476--62916658 Score: 242
Period size: 50 Copynumber: 3.7 Consensus size: 49
62916466 AAGCTATCTG
* * * *
62916476 GTACTCATAGTAGCCTGCACTTAGTACTACACATGCGACTAATTATCCA
1 GTACACATAGTAGCCTGCACTTAGTACTACACACGTGACTAATTATCGA
**
62916525 GTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGA
1 GTACACATAGTAGCCTGCACTTAGTACTACACACGTGA-CTAATTATC-GA
* *
62916576 -TACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCGA
1 GTACACATAGTAGCCTGCACTTAGTACTACACACGTGA-CTAA-TTATCGA
*
62916626 GTACGCATAGTAGCCTGCACTTAGTACTACACA
1 GTACACATAGTAGCCTGCACTTAGTACTACACA
62916659 TGCGACCTCA
Statistics
Matches: 117, Mismatches: 13, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
49 35 0.30
50 48 0.41
51 34 0.29
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.26
Consensus pattern (49 bp):
GTACACATAGTAGCCTGCACTTAGTACTACACACGTGACTAATTATCGA
Found at i:62916666 original size:101 final size:99
Alignment explanation
Indices: 62916483--62916666 Score: 287
Period size: 101 Copynumber: 1.8 Consensus size: 99
62916473 CTGGTACTCA
* *
62916483 TAGTAGCCTGCACTTAGTACTACACATGCGACTAATTATCCAGTACACATAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGCGACGAATTATCCAGTACACATAGTAGCCTGCACTTA
*
62916548 GTACTACACACGTGACCTAACCATCTGATACACG
66 GTACTACACACGCGACCTAACCATCTGATACACG
* * *
62916582 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCGAGTACGCATAGTAGCCTGCACT
1 TAGTAGCCTGCACTTAGTACTACACACGCGA-CGAA-TTATCCAGTACACATAGTAGCCTGCACT
*
62916647 TAGTACTACACATGCGACCT
64 TAGTACTACACACGCGACCT
62916667 CACAATAGAT
Statistics
Matches: 76, Mismatches: 7, Indels: 2
0.89 0.08 0.02
Matches are distributed among these distances:
99 29 0.38
100 3 0.04
101 44 0.58
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.26
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACGAATTATCCAGTACACATAGTAGCCTGCACTTA
GTACTACACACGCGACCTAACCATCTGATACACG
Found at i:62918787 original size:49 final size:49
Alignment explanation
Indices: 62918710--62918948 Score: 271
Period size: 49 Copynumber: 4.8 Consensus size: 49
62918700 TAGCCGAAGC
* * *
62918710 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAAT
* * * *
62918759 TATCCGGTACACGTAGTACCCTGCACTTAGTACTACACACGTGACCTAAC
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACC-AAT
* ** * *
62918809 CATCTAATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-T
* ** * * * *
62918860 TATCAGGTATGCATAGTAGCCTGCATTTGGTACTACACATGCGACCAAT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAAT
*
62918909 TATCTGGTACACGTAGTAGCCTACACTTAGTACTACACAC
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACAC
62918949 CTGACCACAC
Statistics
Matches: 153, Mismatches: 34, Indels: 6
0.79 0.18 0.03
Matches are distributed among these distances:
49 73 0.48
50 46 0.30
51 34 0.22
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (49 bp):
TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAAT
Found at i:62919632 original size:30 final size:30
Alignment explanation
Indices: 62919598--62919657 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
62919588 CTTTAATACG
62919598 AACTTTGGCAAAATTATCA-TTTTGCCCCTA
1 AACTTTGGCAAAATTA-CACTTTTGCCCCTA
* * *
62919628 AACTTTTGCATAATTACACTTTTTCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
62919658 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
29 2 0.08
30 24 0.92
ACGTcount: A:0.28, C:0.25, G:0.07, T:0.40
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTGCCCCTA
Found at i:62921729 original size:15 final size:15
Alignment explanation
Indices: 62921711--62921743 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
62921701 GAAGCCAAAA
62921711 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
*
62921726 ATAAAGAAATCCATG
1 ATAAAGAAATCCAAG
62921741 ATA
1 ATA
62921744 CGAGAATCCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.58, C:0.12, G:0.12, T:0.18
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:62924673 original size:51 final size:49
Alignment explanation
Indices: 62924486--62924724 Score: 289
Period size: 49 Copynumber: 4.8 Consensus size: 49
62924476 TAGCCGAAGC
* * * * *
62924486 TATCTGGTACGCATAGTAGCCTGCACTTAGTCCTACACATGCGGCCAAT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAAT
* * * *
62924535 TATCCGGTACACGTAGTACCCTGCACTTAGTACTACACACGTGACCTAAC
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACC-AAT
* * * *
62924585 CATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCAAAGT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-T
* * * *
62924636 TATCAGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAAT
*
62924685 TATCTGGTACACGTAGTAGCCTACACTTAGTACTACACAC
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACAC
62924725 CTGACCTCAC
Statistics
Matches: 159, Mismatches: 28, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
49 74 0.47
50 47 0.30
51 38 0.24
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.26
Consensus pattern (49 bp):
TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAAT
Found at i:62930825 original size:46 final size:46
Alignment explanation
Indices: 62930775--62930950 Score: 209
Period size: 46 Copynumber: 3.8 Consensus size: 46
62930765 TGATTGAGCA
62930775 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
62930821 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
62930866 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
62930914 -CCTGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
62930951 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 9, Indels: 20
0.79 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 5 0.05
46 61 0.55
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:62930931 original size:93 final size:93
Alignment explanation
Indices: 62930772--62930943 Score: 310
Period size: 93 Copynumber: 1.8 Consensus size: 93
62930762 GGATGATTGA
*
62930772 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
62930837 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
62930865 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCTGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC-GAACTCGTTGAG
62930929 TTGAGTCCGAGTTCG
65 TTGAGTCCGAGTTCG
62930944 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
92 2 0.03
93 74 0.97
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:62935370 original size:39 final size:40
Alignment explanation
Indices: 62935269--62935460 Score: 178
Period size: 40 Copynumber: 4.8 Consensus size: 40
62935259 TCAAATGATG
* * * *
62935269 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTAC-GAGTTACTAAT
* *
62935308 ATCCGGACTAAGAT-CCGAAGGCATTTGTACGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTACGAGTTACTAAT
* ** *
62935349 TCCGGGCTAAG-CCCGAAGGCATTGGTGTGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTAAT
* *
62935388 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTAAT
* * *
62935427 AACCGGGCTATGTCCCGAAGGCATTTGAACGAGT
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTACGAGT
62935461 AGCTATATCC
Statistics
Matches: 125, Mismatches: 21, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
39 33 0.26
40 83 0.66
41 9 0.07
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTAAT
Found at i:62935405 original size:79 final size:81
Alignment explanation
Indices: 62935269--62935451 Score: 214
Period size: 79 Copynumber: 2.3 Consensus size: 81
62935259 TCAAATGATG
* *
62935269 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
62935333 TGTACGAGATACTA-A
66 TGTACGAGATACTATA
* * * **
62935348 TTCCGGGCTAAG-CCCGAAGGCATTGGTG-TGAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
* *
62935410 TTTGTGCGAGTTACTATA
64 TTTGTACGAGATACTATA
* *
62935428 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
62935452 TGAACGAGTA
Statistics
Matches: 88, Mismatches: 11, Indels: 8
0.82 0.10 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.66
80 29 0.33
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTACGAGATACTATA
Found at i:62935475 original size:79 final size:79
Alignment explanation
Indices: 62935322--62935476 Score: 181
Period size: 79 Copynumber: 2.0 Consensus size: 79
62935312 GGACTAAGAT
* ***
62935322 CCGAAGGCATTTGTACGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGTGAGTTACTAA
1 CCGAAGGCATTTGTACGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
62935387 ATCCGGGTTAAGTC
66 ATCCGGGTTAAGTC
* * * *
62935401 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTACGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
*
62935464 TATATCC-GGTTAA
63 TAAATCCGGGTTAA
62935477 ATTCCGAATG
Statistics
Matches: 64, Mismatches: 9, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
78 2 0.03
79 39 0.61
80 23 0.36
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTACGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAGTC
Found at i:62941499 original size:40 final size:39
Alignment explanation
Indices: 62941451--62941703 Score: 194
Period size: 37 Copynumber: 6.6 Consensus size: 39
62941441 AGCTCTCGTT
*
62941451 CAAATGCCTTCGGAACATAGCCCGGTTATAGTAATTCGCA
1 CAAATGCCTTCGG-ACTTAGCCCGGTTATAGTAATTCGCA
* *
62941491 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
1 CAAATGCCTTC-GGACTTAGCCCGG-TTATAGTAATTCGCA
*
62941531 CAAATGCCTTCGG-CTTAGCCCGG-AATAGT-ATCTCGCA
1 CAAATGCCTTCGGACTTAGCCCGGTTATAGTAAT-TCGCA
* *
62941568 CAAATGCCTTCGG-CTTAGCCCGG-AATTGT-ATCTCGCA
1 CAAATGCCTTCGGACTTAGCCCGGTTATAGTAAT-TCGCA
* *
62941605 CAAATG-C-TCGGGCTTAGCCCGG-AATTAGT-ATCTCGCA
1 CAAATGCCTTCGGACTTAGCCCGGTTA-TAGTAAT-TCGCA
* * * * *
62941642 CAAATG-CTTCGGATCTTAGTCCGGATATTGTCACTTAGCA
1 CAAATGCCTTCGGA-CTTAGCCCGGTTATAGT-AATTCGCA
62941682 C-AA-G-CTTCGGGACTTAGCCCGG
1 CAAATGCCTTC-GGACTTAGCCCGG
62941704 ACATCATTCA
Statistics
Matches: 186, Mismatches: 15, Indels: 26
0.82 0.07 0.11
Matches are distributed among these distances:
35 4 0.02
36 14 0.08
37 69 0.37
38 27 0.15
39 19 0.10
40 48 0.26
41 5 0.03
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (39 bp):
CAAATGCCTTCGGACTTAGCCCGGTTATAGTAATTCGCA
Found at i:62941569 original size:37 final size:37
Alignment explanation
Indices: 62941451--62941653 Score: 243
Period size: 37 Copynumber: 5.4 Consensus size: 37
62941441 AGCTCTCGTT
* *
62941451 CAAATGCCTTCGGAACATAGCCCGGTTATAGTAAT-TCGCA
1 CAAATGCCTTCGG--CTTAGCCCGG-AATAGT-ATCTCGCA
* * *
62941491 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTC-GG-CTTAGCCCGGA-ATAGTATCTCGCA
62941531 CAAATGCCTTCGGCTTAGCCCGGAATAGTATCTCGCA
1 CAAATGCCTTCGGCTTAGCCCGGAATAGTATCTCGCA
*
62941568 CAAATGCCTTCGGCTTAGCCCGGAATTGTATCTCGCA
1 CAAATGCCTTCGGCTTAGCCCGGAATAGTATCTCGCA
62941605 CAAATG-C-TCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTC-GGCTTAGCCCGGAA-TAGTATCTCGCA
62941642 CAAATG-CTTCGG
1 CAAATGCCTTCGG
62941654 ATCTTAGTCC
Statistics
Matches: 147, Mismatches: 10, Indels: 15
0.85 0.06 0.09
Matches are distributed among these distances:
35 2 0.01
36 15 0.10
37 73 0.50
38 12 0.08
39 3 0.02
40 40 0.27
41 2 0.01
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (37 bp):
CAAATGCCTTCGGCTTAGCCCGGAATAGTATCTCGCA
Found at i:62941690 original size:111 final size:116
Alignment explanation
Indices: 62941451--62941704 Score: 278
Period size: 111 Copynumber: 2.2 Consensus size: 116
62941441 AGCTCTCGTT
* * * *
62941451 CAAATGCCTTCGGAACATAGCCCGGTTATAGTAAT-TCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAATGCCTTCGGGACTTAGCCCGG-AATTGT-ATCTCGCACAAATGCCTTCGGGACTTAACCCG
* *
62941515 GATTTAGTAACTCGCACAAATGCCTTCGGCTTAGCCCGGAATAGTATCTCGCA
64 GAATTAGTAACTCGCACAAATGCCTTCGGCTTAGCCCGGAATAGTATCTAGCA
*
62941568 CAAATGCCTTC-GG-CTTAGCCCGGAATTGTATCTCGCACAAATG-C-TCGGG-CTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTGTATCTCGCACAAATGCCTTCGGGACTTAACCCGGA
* * *
62941628 ATTAGTATCTCGCACAAATG-CTTCGGATCTTAGTCCGGATATTGTCA-CTTAGCA
66 ATTAGTAACTCGCACAAATGCCTTCGG--CTTAGCCCGGA-ATAGT-ATC-TAGCA
62941682 C-AA-G-CTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
62941705 CATCATTCAA
Statistics
Matches: 119, Mismatches: 10, Indels: 20
0.80 0.07 0.13
Matches are distributed among these distances:
110 6 0.05
111 32 0.27
112 18 0.15
113 21 0.18
114 21 0.18
115 9 0.08
116 1 0.01
117 11 0.09
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (116 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTGTATCTCGCACAAATGCCTTCGGGACTTAACCCGGA
ATTAGTAACTCGCACAAATGCCTTCGGCTTAGCCCGGAATAGTATCTAGCA
Found at i:62944224 original size:50 final size:49
Alignment explanation
Indices: 62944101--62944344 Score: 244
Period size: 49 Copynumber: 4.9 Consensus size: 49
62944091 CCGAAGCTAG
* * * * * *
62944101 TCTGGTACGCATAGTAGCCTGCACTTAGTCCTACACATGCGGCCAATTA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAATTA
* * **
62944150 TCCGGTACACGTAGTACCCTGCACTTAGTACTACACACGTGACCTAACCA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC-AATTA
* *
62944200 TCTGATACACGTAGTAGCCTGCACTTAGTACGTACACACGTGATCAAAGTTA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTAC-TACACACGTGA-CCAA-TTA
* *
62944252 TCAGGTA-ACGCATAGT-GCCTGCAC-TAGTACTACACATCG-CACCAATTA
1 TCTGGTACACG--TAGTAGCCTGCACTTAGTACTACACA-CGTGACCAATTA
* *
62944300 TCTGGTACACGTAGTAGCCTACACTTAGTACTACACCACCTGACC
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACA-CACGTGACC
62944345 CACAATAGCT
Statistics
Matches: 159, Mismatches: 24, Indels: 23
0.77 0.12 0.11
Matches are distributed among these distances:
47 4 0.03
48 16 0.10
49 53 0.33
50 43 0.27
51 24 0.15
52 15 0.09
53 4 0.03
ACGTcount: A:0.28, C:0.30, G:0.18, T:0.25
Consensus pattern (49 bp):
TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAATTA
Found at i:62950289 original size:45 final size:45
Alignment explanation
Indices: 62950240--62950412 Score: 176
Period size: 45 Copynumber: 3.8 Consensus size: 45
62950230 TGATTGAGCA
62950240 TCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
62950285 TCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
62950329 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --T-CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
62950377 CCTGAGCTCGTTGAGTTGAGTCCGAG-TCGCTTATGG
1 TC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
62950413 CGGGTTACAT
Statistics
Matches: 107, Mismatches: 10, Indels: 22
0.77 0.07 0.16
Matches are distributed among these distances:
41 2 0.02
42 5 0.05
44 3 0.03
45 38 0.36
46 24 0.22
47 26 0.24
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.31, T:0.29
Consensus pattern (45 bp):
TCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:62954793 original size:40 final size:41
Alignment explanation
Indices: 62954645--62954827 Score: 168
Period size: 38 Copynumber: 4.6 Consensus size: 41
62954635 TCAAATGATG
* * * *
62954645 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * * * *
62954686 TCCGGACTAAGAT-CCGAAGGAATTTGTACGAGATACTA-AT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATAA
*
62954726 TCCGGGCTAAG--CCGAAGGCATTGGTGCGAGTTACTA-AA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
62954764 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-TTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
62954804 -CC-GGCGATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
62954828 AACGAGAGCT
Statistics
Matches: 119, Mismatches: 18, Indels: 13
0.79 0.12 0.09
Matches are distributed among these distances:
38 51 0.43
39 8 0.07
40 31 0.26
41 22 0.18
42 7 0.06
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (41 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:62964930 original size:39 final size:40
Alignment explanation
Indices: 62964835--62965093 Score: 310
Period size: 39 Copynumber: 6.7 Consensus size: 40
62964825 TTGAATGATG
*
62964835 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
62964873 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
62964914 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
62964952 TCC-GGCTAAG--CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
62964989 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
62965028 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
62965067 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
62965094 AACGAGGAGC
Statistics
Matches: 197, Mismatches: 11, Indels: 23
0.85 0.05 0.10
Matches are distributed among these distances:
36 23 0.12
37 13 0.07
38 13 0.07
39 77 0.39
40 59 0.30
41 11 0.06
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:62964977 original size:75 final size:77
Alignment explanation
Indices: 62964835--62965093 Score: 318
Period size: 75 Copynumber: 3.3 Consensus size: 77
62964825 TTGAATGATG
*
62964835 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGACAATATCCGGACTAAGATCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACAAT-TCCGG-CTAAG-TCCGAAGGCAT
62964897 TTGTGCGAGATACTAAT
61 TTGTGCGAGATACTAAT
62964914 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACAATTCCGGCTAAG-CCGAAGGCATTTGTG
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACAATTCCGGCTAAGTCCGAAGGCATTTGTG
62964977 CGAGATACTAAT
66 CGAGATACTAAT
* * *
62964989 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATAC-AATTCC-GGCTAAGT-CCGAAGGCATTT
62965053 GTGCGA-ATTACT-AT
63 GTGCGAGA-TACTAAT
* *
62965067 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
62965094 AACGAGGAGC
Statistics
Matches: 164, Mismatches: 6, Indels: 19
0.87 0.03 0.10
Matches are distributed among these distances:
75 61 0.37
76 5 0.03
77 11 0.07
78 17 0.10
79 47 0.29
80 22 0.13
81 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.24
Consensus pattern (77 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACAATTCCGGCTAAGTCCGAAGGCATTTGTG
CGAGATACTAAT
Found at i:62971640 original size:38 final size:38
Alignment explanation
Indices: 62971589--62972056 Score: 324
Period size: 38 Copynumber: 11.1 Consensus size: 38
62971579 AAAATGAAAA
*
62971589 AACGTGGTGCTAAGTGGATATGCCACGGTTATACATGT
1 AACGTGGTGCTAAGTGGATATACCACGGTTATACATGT
*
62971627 AACGTGGTGCTAAGTGGATATACCACGATTACACATATTGATACATGT
1 AACGTGGTGCTAAGTGGATATACCACG---------GTT-ATACATGT
* *
62971675 AACGTGGTGCTAAGTGGATATACTACGGTTAAACATGT
1 AACGTGGTGCTAAGTGGATATACCACGGTTATACATGT
** *
62971713 AACGTGGTGCTAAGTGGATATGTCACGGTTACATATATTGATTCATT
1 AACGTGGTGCTAAGTGGATATACCACGGTT--ATACA-TG------T
* * **
62971760 AACGTGGTGCTAAGTAGATATACCACAGTTATATGTGT
1 AACGTGGTGCTAAGTGGATATACCACGGTTATACATGT
*
62971798 AACGTGGTGCTAAGTGGATATACCACGATTACACATATTGATACATGT
1 AACGTGGTGCTAAGTGGATATACCACG---------GTT-ATACATGT
* *
62971846 AACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATT
1 AACGTGGTGCTAAGTGGATATACCACGGTT--ATACA-TG------T
* *
62971893 AACGTGGTGCTAAGTGGATATACCACGGCTAAACATGT
1 AACGTGGTGCTAAGTGGATATACCACGGTTATACATGT
* *
62971931 AACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATT
1 AACGTGGTGCTAAGTGGATATACCACGGTT--ATACA-TG------T
*
62971978 AACGTGGTGCTAAGTGGATATACCACGGTTAAACATGT
1 AACGTGGTGCTAAGTGGATATACCACGGTTATACATGT
* *
62972016 AACGTGGTGCTAAGTGGATATGCCACGGTCATACATGT
1 AACGTGGTGCTAAGTGGATATACCACGGTTATACATGT
62972054 AAC
1 AAC
62972057 ACCCTGAATT
Statistics
Matches: 346, Mismatches: 38, Indels: 92
0.73 0.08 0.19
Matches are distributed among these distances:
38 154 0.45
39 4 0.01
40 10 0.03
41 6 0.02
44 6 0.02
45 10 0.03
47 90 0.26
48 66 0.19
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (38 bp):
AACGTGGTGCTAAGTGGATATACCACGGTTATACATGT
Found at i:62971745 original size:86 final size:86
Alignment explanation
Indices: 62971589--62971876 Score: 452
Period size: 86 Copynumber: 3.4 Consensus size: 86
62971579 AAAATGAAAA
*
62971589 AACGTGGTGCTAAGTGGATATGCCACGGTTATACATGTAACGTGGTGCTAAGTGGATATACCACG
1 AACGTGGTGCTAAGTGGATATACCACGGTTATACATGTAACGTGGTGCTAAGTGGATATACCACG
62971654 ATTACACATATTGATACATGT
66 ATTACACATATTGATACATGT
* * **
62971675 AACGTGGTGCTAAGTGGATATACTACGGTTAAACATGTAACGTGGTGCTAAGTGGATATGTCACG
1 AACGTGGTGCTAAGTGGATATACCACGGTTATACATGTAACGTGGTGCTAAGTGGATATACCACG
* * *
62971740 GTTACATATATTGATTCAT-T
66 ATTACACATATTGATACATGT
* * **
62971760 AACGTGGTGCTAAGTAGATATACCACAGTTATATGTGTAACGTGGTGCTAAGTGGATATACCACG
1 AACGTGGTGCTAAGTGGATATACCACGGTTATACATGTAACGTGGTGCTAAGTGGATATACCACG
62971825 ATTACACATATTGATACATGT
66 ATTACACATATTGATACATGT
*
62971846 AACGTGGTGCTAAGTGGATATGCCACGGTTA
1 AACGTGGTGCTAAGTGGATATACCACGGTTA
62971877 CATATATTGA
Statistics
Matches: 179, Mismatches: 22, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
85 74 0.41
86 105 0.59
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.30
Consensus pattern (86 bp):
AACGTGGTGCTAAGTGGATATACCACGGTTATACATGTAACGTGGTGCTAAGTGGATATACCACG
ATTACACATATTGATACATGT
Found at i:62971873 original size:133 final size:133
Alignment explanation
Indices: 62971707--62972008 Score: 489
Period size: 133 Copynumber: 2.3 Consensus size: 133
62971697 CTACGGTTAA
*
62971707 ACATGTAACGTGGTGCTAAGTGGATATGTCACGGTTACATATATTGATTCATTAACGTGGTGCTA
1 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACGTGGTGCTA
* * **
62971772 AGTAGATATACCACAGTTATATGTGTAACGTGGTGCTAAGTGGATATACCACGATTACACATATT
66 AGTAGATATACCACAGCTAAACATGTAACGTGGTGCTAAGTGGATATACCACGATTACACATATT
62971837 GAT
131 GAT
62971840 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACGTGGTGCTA
1 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACGTGGTGCTA
* * * * *
62971905 AGTGGATATACCACGGCTAAACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATT
66 AGTAGATATACCACAGCTAAACATGTAACGTGGTGCTAAGTGGATATACCACGATTACACATATT
62971970 GAT
131 GAT
* *
62971973 TCAT-TAACGTGGTGCTAAGTGGATATACCACGGTTA
1 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTA
62972009 AACATGTAAC
Statistics
Matches: 157, Mismatches: 12, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
132 31 0.20
133 126 0.80
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.31
Consensus pattern (133 bp):
ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACGTGGTGCTA
AGTAGATATACCACAGCTAAACATGTAACGTGGTGCTAAGTGGATATACCACGATTACACATATT
GAT
Found at i:62971898 original size:47 final size:46
Alignment explanation
Indices: 62971797--62972008 Score: 280
Period size: 47 Copynumber: 4.7 Consensus size: 46
62971787 GTTATATGTG
* *
62971797 TAACGTGGTGCTAAGTGGATATACCACGATTACACATATTGATACAT
1 TAACGTGGTGCTAAGTGGATATACCACGGTTACATATATTGAT-CAT
*
62971844 GTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCAT
1 -TAACGTGGTGCTAAGTGGATATACCACGGTTACATATATTGA-TCAT
62971892 TAACGTGGTGCTAAGTGGATATACCACGG---C-TA-A---A-CAT
1 TAACGTGGTGCTAAGTGGATATACCACGGTTACATATATTGATCAT
*
62971929 GTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCAT
1 -TAACGTGGTGCTAAGTGGATATACCACGGTTACATATATTGA-TCAT
62971977 TAACGTGGTGCTAAGTGGATATACCACGGTTA
1 TAACGTGGTGCTAAGTGGATATACCACGGTTA
62972009 AACATGTAAC
Statistics
Matches: 146, Mismatches: 6, Indels: 25
0.82 0.03 0.14
Matches are distributed among these distances:
37 3 0.02
38 28 0.19
39 1 0.01
41 1 0.01
42 3 0.02
43 3 0.02
44 1 0.01
46 1 0.01
47 59 0.40
48 45 0.31
49 1 0.01
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (46 bp):
TAACGTGGTGCTAAGTGGATATACCACGGTTACATATATTGATCAT
Found at i:62971936 original size:171 final size:166
Alignment explanation
Indices: 62971589--62971961 Score: 486
Period size: 171 Copynumber: 2.2 Consensus size: 166
62971579 AAAATGAAAA
62971589 AACGTGGTGCTAAGTGGATATGCCACGGTTATACATGTAACGTGGTGCTAAGTGGATATACCACG
1 AACGTGGTGCTAAGTGGATATGCCACGGTTATACATGTAACGTGGTGCTAAGTGGATATACCACG
*
62971654 ATTACACATATTGATACATGTAACGTGGTGCTAAGTGGATATACTACGGTTAAACATGTAACGTG
66 ATTACACATATTGATACATGTAACGTGGTGCTAAGTGGATATACCACGGTTAAACATGTAACGTG
**
62971719 GTGCTAAGTGGATATGTCACGGTTACATATATTGATTCATT
131 GTGCTAAGTGGATATACCACGG-T-CATATA-T-A-TCATT
* * * **
62971760 AACGTGGTGCTAAGTAGATATACCACAGTTATATGTGTAACGTGGTGCTAAGTGGATATACCACG
1 AACGTGGTGCTAAGTGGATATGCCACGGTTATACATGTAACGTGGTGCTAAGTGGATATACCACG
* *
62971825 ATTACACATATTGATACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTC
66 ATTACACATATTGATACATGTAACGTGGTGCTAAGTGGATATACCACGGTTA-A-ACA-TG----
62971890 ATTAACGTGGTGCTAAGTGGATATACCACGG-C-TA-A-A-CATGT
124 --TAACGTGGTGCTAAGTGGATATACCACGGTCATATATATCAT-T
62971931 AACGTGGTGCTAAGTGGATATGCCACGGTTA
1 AACGTGGTGCTAAGTGGATATGCCACGGTTA
62971962 CATATATTGA
Statistics
Matches: 179, Mismatches: 13, Indels: 20
0.84 0.06 0.09
Matches are distributed among these distances:
170 3 0.02
171 139 0.78
172 2 0.01
173 2 0.01
174 2 0.01
175 1 0.01
176 2 0.01
177 1 0.01
180 27 0.15
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.30
Consensus pattern (166 bp):
AACGTGGTGCTAAGTGGATATGCCACGGTTATACATGTAACGTGGTGCTAAGTGGATATACCACG
ATTACACATATTGATACATGTAACGTGGTGCTAAGTGGATATACCACGGTTAAACATGTAACGTG
GTGCTAAGTGGATATACCACGGTCATATATATCATT
Found at i:62971945 original size:85 final size:85
Alignment explanation
Indices: 62971840--62972044 Score: 401
Period size: 85 Copynumber: 2.4 Consensus size: 85
62971830 ACATATTGAT
62971840 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACGTGGTGCTA
1 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACGTGGTGCTA
62971905 AGTGGATATACCACGGCTAA
66 AGTGGATATACCACGGCTAA
62971925 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACGTGGTGCTA
1 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACGTGGTGCTA
*
62971990 AGTGGATATACCACGGTTAA
66 AGTGGATATACCACGGCTAA
62972010 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGT
1 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGT
62972045 CATACATGTA
Statistics
Matches: 119, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 119 1.00
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.29
Consensus pattern (85 bp):
ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACGTGGTGCTA
AGTGGATATACCACGGCTAA
Found at i:62971960 original size:218 final size:219
Alignment explanation
Indices: 62971619--62972042 Score: 724
Period size: 218 Copynumber: 1.9 Consensus size: 219
62971609 TGCCACGGTT
62971619 ATACATGTAACGTGGTGCTAAGTGGATATACCACGATTACACATATTGATACATGTAACGTGGTG
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACGATTACACATATTGATACATGTAACGTGGTG
* * *
62971684 CTAAGTGGATATACTACGGTTAAACATGTAACGTGGTGCTAAGTGGATATGTCACGGTTACATAT
66 CTAAGTGGATATACCACGGCTAAACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATAT
* **
62971749 ATTGATTCATTAACGTGGTGCTAAGTAGATATACCACAGTTATATGTGTAACGTGGTGCTAAGTG
131 ATTGATTCATTAACGTGGTGCTAAGTAGATATACCACAGTTAAACATGTAACGTGGTGCTAAGTG
62971814 GATATACCACGATTACACATATTG
196 GATATACCACGATTACACATATTG
* * * *
62971838 ATACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCAT-TAACGTGGTG
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACGATTACACATATTGATACATGTAACGTGGTG
62971902 CTAAGTGGATATACCACGGCTAAACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATAT
66 CTAAGTGGATATACCACGGCTAAACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATAT
* *
62971967 ATTGATTCATTAACGTGGTGCTAAGTGGATATACCACGGTTAAACATGTAACGTGGTGCTAAGTG
131 ATTGATTCATTAACGTGGTGCTAAGTAGATATACCACAGTTAAACATGTAACGTGGTGCTAAGTG
*
62972032 GATATGCCACG
196 GATATACCACG
62972043 GTCATACATG
Statistics
Matches: 192, Mismatches: 13, Indels: 1
0.93 0.06 0.00
Matches are distributed among these distances:
218 142 0.74
219 50 0.26
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.30
Consensus pattern (219 bp):
ATACATGTAACGTGGTGCTAAGTGGATATACCACGATTACACATATTGATACATGTAACGTGGTG
CTAAGTGGATATACCACGGCTAAACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATAT
ATTGATTCATTAACGTGGTGCTAAGTAGATATACCACAGTTAAACATGTAACGTGGTGCTAAGTG
GATATACCACGATTACACATATTG
Found at i:62972944 original size:27 final size:27
Alignment explanation
Indices: 62972914--62973028 Score: 72
Period size: 27 Copynumber: 4.3 Consensus size: 27
62972904 CGACTTGTAA
62972914 AATTACCAAAGTACTCCT-GATTTACAG
1 AATTACCAAAGTAC-CCTCGATTTACAG
****
62972941 AATTACCGTTTTACCCTCGATTTACAG
1 AATTACCAAAGTACCCTCGATTTACAG
**** * *
62972968 AATTACCGTTTTACCCT-TAGTTTACAA
1 AATTACCAAAGTACCCTCGA-TTTACAG
* ***
62972995 AATTACTATTTTACCCTCGATTTACAG
1 AATTACCAAAGTACCCTCGATTTACAG
62973022 AATTACC
1 AATTACC
62973029 GTTTTACCCT
Statistics
Matches: 74, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
26 4 0.05
27 69 0.93
28 1 0.01
ACGTcount: A:0.31, C:0.23, G:0.09, T:0.37
Consensus pattern (27 bp):
AATTACCAAAGTACCCTCGATTTACAG
Found at i:62972972 original size:54 final size:54
Alignment explanation
Indices: 62972934--62973198 Score: 370
Period size: 54 Copynumber: 4.9 Consensus size: 54
62972924 GTACTCCTGA
* *
62972934 TTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTTAG
1 TTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAG
**
62972988 TTTACAAAATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAG
1 TTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAG
* ** * * *
62973042 TTTACAGAATTATTGTTTTACCCTTGATTTACAAAATTACTGTTTTACCCTC-G
1 TTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAG
** * * *
62973095 ATTTGTAAAATTACCGTTTTACCCTTGATTTACAGAATTACTGGTTTACCCTCAG
1 -TTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAG
*
62973150 TTTACAAAATTATCGTTTTACCCTCGATTTACAGAATTACCGTTTTACC
1 TTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACC
62973199 ATTGATTGTG
Statistics
Matches: 186, Mismatches: 23, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
53 1 0.01
54 184 0.99
55 1 0.01
ACGTcount: A:0.28, C:0.22, G:0.10, T:0.41
Consensus pattern (54 bp):
TTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAG
Found at i:62973022 original size:81 final size:81
Alignment explanation
Indices: 62972932--62973198 Score: 405
Period size: 81 Copynumber: 3.3 Consensus size: 81
62972922 AAGTACTCCT
*
62972932 GATTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTTAGTTTACAAAA
1 GATTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTTTACCCTTAGTTTACAAAA
*
62972997 TTACTATTTTACCCTC
66 TTACTGTTTTACCCTC
*
62973013 GATTTACAGAATTACCGTTTTACCCTC-AGTTTACAGAATTATTGTTTTACCCTT-GATTTACAA
1 GATTTACAGAATTACCGTTTTACCCTCGA-TTTACAGAATTACTGTTTTACCCTTAG-TTTACAA
62973076 AATTACTGTTTTACCCTC
64 AATTACTGTTTTACCCTC
** * * * *
62973094 GATTTGTAAAATTACCGTTTTACCCTTGATTTACAGAATTACTGGTTTACCCTCAGTTTACAAAA
1 GATTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTTTACCCTTAGTTTACAAAA
62973159 TTA-TCGTTTTACCCTC
66 TTACT-GTTTTACCCTC
62973175 GATTTACAGAATTACCGTTTTACC
1 GATTTACAGAATTACCGTTTTACC
62973199 ATTGATTGTG
Statistics
Matches: 168, Mismatches: 13, Indels: 10
0.88 0.07 0.05
Matches are distributed among these distances:
80 3 0.02
81 163 0.97
82 2 0.01
ACGTcount: A:0.28, C:0.22, G:0.10, T:0.40
Consensus pattern (81 bp):
GATTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTTTACCCTTAGTTTACAAAA
TTACTGTTTTACCCTC
Found at i:62973033 original size:27 final size:27
Alignment explanation
Indices: 62972932--62973198 Score: 333
Period size: 27 Copynumber: 9.9 Consensus size: 27
62972922 AAGTACTCCT
62972932 GATTTACAGAATTACCGTTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTC
62972959 GATTTACAGAATTACCGTTTTACCCT-
1 GATTTACAGAATTACCGTTTTACCCTC
* * **
62972985 TAGTTTACAAAATTACTATTTTACCCTC
1 GA-TTTACAGAATTACCGTTTTACCCTC
62973013 GATTTACAGAATTACCGTTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTC
** *
62973040 -AGTTTACAGAATTATTGTTTTACCCTT
1 GA-TTTACAGAATTACCGTTTTACCCTC
* *
62973067 GATTTACAAAATTACTGTTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTC
** * *
62973094 GATTTGTAAAATTACCGTTTTACCCTT
1 GATTTACAGAATTACCGTTTTACCCTC
* *
62973121 GATTTACAGAATTACTGGTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTC
* *
62973148 -AGTTTACAAAATTATCGTTTTACCCTC
1 GA-TTTACAGAATTACCGTTTTACCCTC
62973175 GATTTACAGAATTACCGTTTTACC
1 GATTTACAGAATTACCGTTTTACC
62973199 ATTGATTGTG
Statistics
Matches: 204, Mismatches: 30, Indels: 12
0.83 0.12 0.05
Matches are distributed among these distances:
26 3 0.01
27 198 0.97
28 3 0.01
ACGTcount: A:0.28, C:0.22, G:0.10, T:0.40
Consensus pattern (27 bp):
GATTTACAGAATTACCGTTTTACCCTC
Found at i:62973247 original size:27 final size:27
Alignment explanation
Indices: 62973210--62973401 Score: 203
Period size: 27 Copynumber: 7.3 Consensus size: 27
62973200 TTGATTGTGA
* * *
62973210 AATTACTGAAATACCCCTGTAGAGTAG
1 AATTACCGAAATACCCCTATAGGGTAG
*
62973237 AATTTCCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTATAGGGTAG
* *
62973264 AATT----AAATACCCTTATAGGATAG
1 AATTACCGAAATACCCCTATAGGGTAG
* *
62973287 AATTACCAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTATAGGGTAG
* *
62973314 AATTATCGAAATACCCTTATAGGGTAG
1 AATTACCGAAATACCCCTATAGGGTAG
* *
62973341 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTATAGGGTAG
* * * * *
62973368 AATTACCGAGATACCCTTGTGGGGTAA
1 AATTACCGAAATACCCCTATAGGGTAG
62973395 AATTACC
1 AATTACC
62973402 ATTTTGCCCC
Statistics
Matches: 139, Mismatches: 22, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
23 21 0.15
27 118 0.85
ACGTcount: A:0.36, C:0.19, G:0.19, T:0.26
Consensus pattern (27 bp):
AATTACCGAAATACCCCTATAGGGTAG
Found at i:62973353 original size:54 final size:54
Alignment explanation
Indices: 62973217--62973401 Score: 225
Period size: 54 Copynumber: 3.5 Consensus size: 54
62973207 TGAAATTACT
* * * * *
62973217 GAAATACCCCTGTAGAGTAGAATTTCCGAAATACCCCTATAGGGTAGAA-T-T-
1 GAAATACCCTTATAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTATC
* *
62973268 -AAATACCCTTATAGGATAGAATTACCAAAATACCCCTGTAGGGTAGAATTATC
1 GAAATACCCTTATAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTATC
* *
62973321 GAAATACCCTTATAGGGTAGAAATACCGAAATACCCCTGTAGGGTAGAATTACC
1 GAAATACCCTTATAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTATC
* * * *
62973375 GAGATACCCTTGTGGGGTAAAATTACC
1 GAAATACCCTTATAGGGTAGAATTACC
62973402 ATTTTGCCCC
Statistics
Matches: 114, Mismatches: 16, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
50 41 0.36
51 1 0.01
52 1 0.01
54 71 0.62
ACGTcount: A:0.36, C:0.19, G:0.19, T:0.25
Consensus pattern (54 bp):
GAAATACCCTTATAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTATC
Found at i:62973661 original size:27 final size:26
Alignment explanation
Indices: 62973600--62973679 Score: 97
Period size: 27 Copynumber: 3.0 Consensus size: 26
62973590 CGGAGGAAGC
* *
62973600 GTTCTGATGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTCTGCCAC-AATATCT
62973627 GTTCTGGTGGCTCTGCCACAATATCT
1 GTTCTGGTGGCTCTGCCACAATATCT
* * *
62973653 GTATTTGGTGACTCTGTCACAATATCT
1 GT-TCTGGTGGCTCTGCCACAATATCT
62973680 ATTGACCGAT
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
26 9 0.19
27 38 0.81
ACGTcount: A:0.21, C:0.23, G:0.20, T:0.36
Consensus pattern (26 bp):
GTTCTGGTGGCTCTGCCACAATATCT
Found at i:62973804 original size:22 final size:22
Alignment explanation
Indices: 62973770--62973828 Score: 55
Period size: 22 Copynumber: 2.7 Consensus size: 22
62973760 CCCGTTATTA
* *
62973770 ATGGCTCTATGCCAACCTAAAT
1 ATGGCTTTGTGCCAACCTAAAT
* * * *
62973792 ATGGCTTTGTGCCATCTTGACT
1 ATGGCTTTGTGCCAACCTAAAT
*
62973814 ATGGCTTCGTGCCAA
1 ATGGCTTTGTGCCAA
62973829 ACGTATTTAC
Statistics
Matches: 29, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.22, C:0.25, G:0.20, T:0.32
Consensus pattern (22 bp):
ATGGCTTTGTGCCAACCTAAAT
Found at i:62974193 original size:6 final size:6
Alignment explanation
Indices: 62974184--62974358 Score: 121
Period size: 6 Copynumber: 28.8 Consensus size: 6
62974174 TTGCATTCAC
* * *
62974184 ATTCTG ATTCTG ATTCTG -TCACCTA ATTCTG ATTCTG ATTTTG ATTCTG
1 ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG
* * *
62974233 -TTACTA ATACTG ATTCTG ATTCTA ATTCTG -TTACTG ATTCTG ATTCTG
1 ATT-CTG ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG
* * * * *
62974281 ATTCTG -TCACCTA ATTTTG ATTCTG ATTCTG ATTTTG -TTACTA ATAT-TG
1 ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG AT-TCTG
62974330 ATTCTG ATTCTG ATTCTG -TTACTG ATTCT
1 ATTCTG ATTCTG ATTCTG ATT-CTG ATTCT
62974359 CATTTTGGTT
Statistics
Matches: 131, Mismatches: 22, Indels: 32
0.71 0.12 0.17
Matches are distributed among these distances:
5 11 0.08
6 107 0.82
7 10 0.08
8 3 0.02
ACGTcount: A:0.21, C:0.17, G:0.13, T:0.50
Consensus pattern (6 bp):
ATTCTG
Found at i:62974246 original size:30 final size:30
Alignment explanation
Indices: 62974184--62974352 Score: 197
Period size: 30 Copynumber: 5.8 Consensus size: 30
62974174 TTGCATTCAC
* *
62974184 ATTCTGATTCTGATTCTGTCACCTAATTCTG
1 ATTCTGATTCTGATTCTGTTA-CTAATACTG
*
62974215 ATTCTGATTTTGATTCTGTTACTAATACTG
1 ATTCTGATTCTGATTCTGTTACTAATACTG
*
62974245 ATTCTGATTCTAATTCTG----T--TACTG
1 ATTCTGATTCTGATTCTGTTACTAATACTG
* **
62974269 ATTCTGATTCTGATTCTGTCACCTAATTTTG
1 ATTCTGATTCTGATTCTGTTA-CTAATACTG
* *
62974300 ATTCTGATTCTGATTTTGTTACTAATATTG
1 ATTCTGATTCTGATTCTGTTACTAATACTG
62974330 ATTCTGATTCTGATTCTGTTACT
1 ATTCTGATTCTGATTCTGTTACT
62974353 GATTCTCATT
Statistics
Matches: 119, Mismatches: 12, Indels: 15
0.82 0.08 0.10
Matches are distributed among these distances:
24 22 0.18
26 1 0.01
29 1 0.01
30 54 0.45
31 41 0.34
ACGTcount: A:0.21, C:0.17, G:0.13, T:0.50
Consensus pattern (30 bp):
ATTCTGATTCTGATTCTGTTACTAATACTG
Found at i:62974324 original size:85 final size:85
Alignment explanation
Indices: 62974184--62974358 Score: 305
Period size: 85 Copynumber: 2.1 Consensus size: 85
62974174 TTGCATTCAC
*
62974184 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTTTGATTCTGTTACTAATACTGATTC
1 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATACTGATTC
62974249 TGATTCTAATTCTGTTACTG
66 TGATTCTAATTCTGTTACTG
* * *
62974269 ATTCTGATTCTGATTCTGTCACCTAATTTTGATTCTGATTCTGATTTTGTTACTAATATTGATTC
1 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATACTGATTC
*
62974334 TGATTCTGATTCTGTTACTG
66 TGATTCTAATTCTGTTACTG
62974354 ATTCT
1 ATTCT
62974359 CATTTTGGTT
Statistics
Matches: 85, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
85 85 1.00
ACGTcount: A:0.21, C:0.17, G:0.13, T:0.50
Consensus pattern (85 bp):
ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATACTGATTC
TGATTCTAATTCTGTTACTG
Found at i:62979463 original size:50 final size:49
Alignment explanation
Indices: 62979384--62979800 Score: 352
Period size: 50 Copynumber: 8.6 Consensus size: 49
62979374 TATGTGTGCT
* * * *
62979384 AGTGTAAGACCATGTTTGGGACATAGCATCGGCACCGATAGATGAGATTT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC-CCGATAGATGAGAGTC
* * * *
62979434 AGTGTAAGACCATGTTTGGGACATGGCATCAGCCTCGATATACGAGAGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCC-CGATAGATGAGAGTC
* ** *
62979484 AGTGTAAGACCATGTCTGGGACATGGCATCGACTTTGAT-G-TGTGAG-C
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC-CCGATAGATGAGAGTC
* *
62979531 AGTGTAAGACCATGTCCGGGACATGGCATCGGCCTCGATATATGAGAG-C
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCC-CGATAGATGAGAGTC
* * ** * *
62979580 TAGTGTAAGACCATGTTTGGGACATGGCATCGACTTG--ACAT--GTGTC
1 -AGTGTAAGACCATGTCTGGGACATGGCATCGGCCCGATAGATGAGAGTC
* * * * *
62979626 AGTGTAAGACCATGTCCGGGATATGGCATCGACACCGGTAGATTAGAG-C
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC-CCGATAGATGAGAGTC
* * *
62979675 TAGTGTAAGACCACGTCTGGGATATGGCATCGGCCTCGATATATGAGAGTC
1 -AGTGTAAGACCATGTCTGGGACATGGCATCGGCC-CGATAGATGAGAGTC
* * ** * *
62979726 AGTGTAAAACCATGTCTGGGACATGGCATCGACTTTGAT-G-TGTGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC-CCGATAGATGAGAGTC
* *
62979774 AATGTAAGACCATGTCCGGGACATGGC
1 AGTGTAAGACCATGTCTGGGACATGGC
62979801 GTCGAAACCT
Statistics
Matches: 299, Mismatches: 52, Indels: 34
0.78 0.14 0.09
Matches are distributed among these distances:
45 32 0.11
46 2 0.01
47 38 0.13
48 37 0.12
49 10 0.03
50 179 0.60
51 1 0.00
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (49 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCCCGATAGATGAGAGTC
Found at i:62979566 original size:97 final size:96
Alignment explanation
Indices: 62979381--62979805 Score: 389
Period size: 97 Copynumber: 4.4 Consensus size: 96
62979371 TGATATGTGT
* * * *
62979381 GCTAGTGTAAGACCATGTTTGGGACATAGCATCGGCAC-CGATA-GATGAGATTTAGTGTAAGAC
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATC-G-ACTTGATATG-TGAG---CAGTGTAAGAC
** *
62979444 CATGTTTGGGACATGGCATC-AGCCTCGATATACGAGA
60 CATGTCCGGGACATGGCATCGA-CCTCGATATATGAGA
*
62979481 G-TCAGTGTAAGACCATGTCTGGGACATGGCATCGACTTTGATGTGTGAGCAGTGTAAGACCATG
1 GCT-AGTGTAAGACCATGTCTGGGACATGGCATCGAC-TTGATATGTGAGCAGTGTAAGACCATG
*
62979545 TCCGGGACATGGCATCGGCCTCGATATATGAGA
64 TCCGGGACATGGCATCGACCTCGATATATGAGA
* * *
62979578 GCTAGTGTAAGACCATGTTTGGGACATGGCATCGACTTGACATGTG-TCAGTGTAAGACCATGTC
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGACTTGATATGTGAGCAGTGTAAGACCATGTC
* * * *
62979642 CGGGATATGGCATCGACAC-CGGTAGATTAGA
66 CGGGACATGGCATCGAC-CTCGATATATGAGA
* * * * * *
62979673 GCTAGTGTAAGACCACGTCTGGGATATGGCATCGGCCTCGATATATGAGAGTCAGTGTAAAACCA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATC-GACTTG--ATATGTGAG-CAGTGTAAGACCA
* * * * *
62979738 TGTCTGGGACATGGCATCGACTTTG--ATGTGTGA
62 TGTCCGGGACATGGCATCGACCTCGATATATGAGA
* * * *
62979771 GCCAATGTAAGACCATGTCCGGGACATGGCGTCGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGA
62979806 AACCTTACCC
Statistics
Matches: 270, Mismatches: 42, Indels: 29
0.79 0.12 0.09
Matches are distributed among these distances:
95 71 0.26
96 13 0.05
97 76 0.28
98 39 0.14
99 2 0.01
100 68 0.25
101 1 0.00
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.25
Consensus pattern (96 bp):
GCTAGTGTAAGACCATGTCTGGGACATGGCATCGACTTGATATGTGAGCAGTGTAAGACCATGTC
CGGGACATGGCATCGACCTCGATATATGAGA
Found at i:62983090 original size:35 final size:36
Alignment explanation
Indices: 62983049--62983133 Score: 127
Period size: 35 Copynumber: 2.3 Consensus size: 36
62983039 AGTTTTCCTT
* *
62983049 ATTTTGTTTCATTGTACATACGACAG-TTTTCTTCC
1 ATTTTGTTTCATTGAACATACCACAGTTTTTCTTCC
62983084 ATTTTGTTTCATTGAACATACCACAGTTTTTTTCTTCC
1 ATTTTGTTTCATTGAACATACCACAG--TTTTTCTTCC
62983122 ATTTTGTTTCAT
1 ATTTTGTTTCAT
62983134 CAAGATAAGT
Statistics
Matches: 45, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
35 24 0.53
38 21 0.47
ACGTcount: A:0.20, C:0.19, G:0.09, T:0.52
Consensus pattern (36 bp):
ATTTTGTTTCATTGAACATACCACAGTTTTTCTTCC
Found at i:62987175 original size:18 final size:16
Alignment explanation
Indices: 62987152--62987196 Score: 54
Period size: 18 Copynumber: 2.6 Consensus size: 16
62987142 AAATATATTT
62987152 TTAAAATTATAAAGAGTA
1 TTAAAATTATAAA-A-TA
*
62987170 TTAAAAATATAAAATA
1 TTAAAATTATAAAATA
62987186 TTAATAATTAT
1 TTAA-AATTAT
62987197 TTTTTTATAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
16 6 0.25
17 6 0.25
18 12 0.50
ACGTcount: A:0.58, C:0.00, G:0.04, T:0.38
Consensus pattern (16 bp):
TTAAAATTATAAAATA
Found at i:62999136 original size:29 final size:28
Alignment explanation
Indices: 62999100--62999177 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
62999090 TCATGAGATT
62999100 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
*
62999130 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
62999157 TGGCACTAAGTGTGCGTGGTT
1 -GGCACTAAGTGTGCG-GGTT
62999178 GATTATTAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 5 0.12
29 35 0.81
30 3 0.07
ACGTcount: A:0.26, C:0.14, G:0.31, T:0.29
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:62999395 original size:174 final size:174
Alignment explanation
Indices: 62999130--62999457 Score: 593
Period size: 174 Copynumber: 1.9 Consensus size: 174
62999120 AAATTGTACA
*
62999130 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGTGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
* * * *
62999195 TGTGTGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTAACGAGTCAA
62999260 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
* *
62999304 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
62999369 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTAACGAGTCAA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTAACGAGTCAA
62999434 TTTTGGACAGCGGAAAAGGTAAGT
131 TTTTGGACAGCGGAAAAGGTAAGT
62999458 ACCTTGAGTT
Statistics
Matches: 147, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
174 147 1.00
ACGTcount: A:0.30, C:0.14, G:0.25, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTAACGAGTCAA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:63001286 original size:27 final size:27
Alignment explanation
Indices: 63001256--63001568 Score: 369
Period size: 27 Copynumber: 11.6 Consensus size: 27
63001246 TTAGTTTACC
* *
63001256 AAATTACTAAAATACTCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * * * *
63001283 AAATCACTAAAATACCCTTGATTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
63001310 AAATCACCAAAATACCCCTGG-TTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* **
63001336 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
63001363 AAATTACCAAAATACCCCTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * *
63001390 AAATT-CCTAAAATACCCTTTGTTTATA
1 AAATTACC-AAAATACCCCTGGTTTGTA
* *
63001417 AAATCACCAAAATACCACTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
63001444 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
63001471 AAATTATCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
63001498 AAATTACCAAAATACCCCTGATTTGTG
1 AAATTACCAAAATACCCCTGGTTTGTA
** *
63001525 AAATTACCAAAATACCCCTAATTTGTG
1 AAATTACCAAAATACCCCTGGTTTGTA
*
63001552 AAATTACTAAAATACCC
1 AAATTACCAAAATACCC
63001569 TCGACCTGTA
Statistics
Matches: 251, Mismatches: 32, Indels: 6
0.87 0.11 0.02
Matches are distributed among these distances:
26 25 0.10
27 224 0.89
28 2 0.01
ACGTcount: A:0.41, C:0.21, G:0.08, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTGTA
Found at i:63001330 original size:54 final size:54
Alignment explanation
Indices: 63001256--63001640 Score: 393
Period size: 54 Copynumber: 7.1 Consensus size: 54
63001246 TTAGTTTACC
* * * *
63001256 AAATTACTAAAATACTCCTGGTTTGTAAAATCACTAAAATACCCTTGATTTATA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGATTTATA
* * *
63001310 AAATCACCAAAATACCCCTGG-TTGTAAAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGATTTATA
*
63001363 AAATTACCAAAATACCCCTGGTTTATAAAATT-CCTAAAATACCCTTTG-TTTATA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACC-AAAATACCC-TTGATTTATA
* * * *
63001417 AAATCACCAAAATACCACTGGTTTGTAAAATTACCAAAATACCCCT-AGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGA-TTTATA
* * * * *
63001471 AAATTATCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTGATTTGTG
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGATTTATA
** * * * ** *
63001525 AAATTACCAAAATACCCCTAATTTGTGAAATTACTAAAATACCCTCGACCTGTA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGATTTATA
*** *** * *
63001579 AAATTATTGAAATA-CCCTCAACTTGTAAAATTACCAAAGTACCCTTGATTTACA
1 AAATTACCAAAATACCCCT-GGTTTGTAAAATTACCAAAATACCCTTGATTTATA
*
63001633 GAATTACC
1 AAATTACC
63001641 GTTTTACCCT
Statistics
Matches: 279, Mismatches: 44, Indels: 16
0.82 0.13 0.05
Matches are distributed among these distances:
53 55 0.20
54 218 0.78
55 6 0.02
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.31
Consensus pattern (54 bp):
AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGATTTATA
Found at i:63001582 original size:27 final size:28
Alignment explanation
Indices: 63001278--63001623 Score: 198
Period size: 27 Copynumber: 12.8 Consensus size: 28
63001268 TACTCCTGGT
* * * *
63001278 TTGTAAAATCACTAAAATACCCT-TGAT
1 TTGTAAAATTACCAAAATACCCTCTAAC
* * **
63001305 TTATAAAATCACCAAAATACCC-CT-GG
1 TTGTAAAATTACCAAAATACCCTCTAAC
***
63001331 TTGTAAAATTACCAAAATACCCT-TGGT
1 TTGTAAAATTACCAAAATACCCTCTAAC
** ***
63001358 TTACAAAATTACCAAAATACCC-CTGGT
1 TTGTAAAATTACCAAAATACCCTCTAAC
* ***
63001385 TTATAAAATT-CCTAAAATACCCT-TTGT
1 TTGTAAAATTACC-AAAATACCCTCTAAC
* * * ***
63001412 TTATAAAATCACCAAAATA-CCACTGGT
1 TTGTAAAATTACCAAAATACCCTCTAAC
**
63001439 TTGTAAAATTACCAAAATACCC-CTAGT
1 TTGTAAAATTACCAAAATACCCTCTAAC
* **
63001466 TTGTAAAATTATCAAAATACCC-CTAGT
1 TTGTAAAATTACCAAAATACCCTCTAAC
* *
63001493 TTGTAAAATTACCAAAATACCC-CTGAT
1 TTGTAAAATTACCAAAATACCCTCTAAC
* *
63001520 TTGTGAAATTACCAAAATACCC-CTAAT
1 TTGTAAAATTACCAAAATACCCTCTAAC
* * *
63001547 TTGTGAAATTACTAAAATACCCTC-GAC
1 TTGTAAAATTACCAAAATACCCTCTAAC
* ***
63001574 CTGTAAAATTATTGAAATACCCTC-AAC
1 TTGTAAAATTACCAAAATACCCTCTAAC
*
63001601 TTGTAAAATTACCAAAGTACCCT
1 TTGTAAAATTACCAAAATACCCT
63001624 TGATTTACAG
Statistics
Matches: 273, Mismatches: 36, Indels: 20
0.83 0.11 0.06
Matches are distributed among these distances:
26 25 0.09
27 243 0.89
28 5 0.02
ACGTcount: A:0.40, C:0.22, G:0.08, T:0.30
Consensus pattern (28 bp):
TTGTAAAATTACCAAAATACCCTCTAAC
Found at i:63001592 original size:81 final size:81
Alignment explanation
Indices: 63001256--63001622 Score: 287
Period size: 81 Copynumber: 4.5 Consensus size: 81
63001246 TTAGTTTACC
* * * * * * * * * *
63001256 AAATTACTAAAATACTCCTGGTTTGTAAAATCACTAAAATACCCTTGATTTATAAAATCACCAAA
1 AAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCCCTAATTTGTAAAATTATCAAA
*
63001321 ATACCCCTG-G-TTGTA
66 ATACCCC-GAGCCTGTA
* * ** ** * *
63001336 AAATTACCAAAATACCCTTGGTTTACAAAATTACCAAAATACCCCTGGTTTATAAAATT-CCTAA
1 AAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCCCTAATTTGTAAAATTATC-AA
*** ** *
63001400 AATACCCTTTGTTTATA
65 AATACCCCGAGCCTGTA
* * * *
63001417 AAATCACCAAAATACCACTGGTTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTATCAAA
1 AAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCCCTAATTTGTAAAATTATCAAA
* **
63001482 ATACCCCTAGTTTGTA
66 ATACCCCGAGCCTGTA
* *
63001498 AAATTACCAAAATACCCCTGATTTGTGAAATTACCAAAATACCCCTAATTTGTGAAATTA-CTAA
1 AAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCCCTAATTTGTAAAATTATC-AA
63001562 AATACCCTCGA-CCTGTA
65 AATACCC-CGAGCCTGTA
*** * * *
63001579 AAATTATTGAAATA-CCCTCAACTTGTAAAATTACCAAAGTACCC
1 AAATTACCAAAATACCCCT-GATTTGTAAAATTACCAAAATACCC
63001623 TTGATTTACA
Statistics
Matches: 240, Mismatches: 40, Indels: 13
0.82 0.14 0.04
Matches are distributed among these distances:
79 2 0.01
80 64 0.27
81 171 0.71
82 3 0.01
ACGTcount: A:0.40, C:0.22, G:0.08, T:0.30
Consensus pattern (81 bp):
AAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCCCTAATTTGTAAAATTATCAAA
ATACCCCGAGCCTGTA
Found at i:63001637 original size:27 final size:26
Alignment explanation
Indices: 63001605--63001680 Score: 71
Period size: 27 Copynumber: 2.8 Consensus size: 26
63001595 CTCAACTTGT
63001605 AAAATTACCAAAGTACCCTTGATTTAC
1 AAAATTACCAAA-TACCCTTGATTTAC
* *** *
63001632 AGAATTACCGTTTTACCCTCGATTTAC
1 AAAATTACC-AAATACCCTTGATTTAC
*
63001659 AAAATTACTGAAATACCCTTGA
1 AAAATTAC-CAAATACCCTTGA
63001681 GGGGTAGAAA
Statistics
Matches: 36, Mismatches: 11, Indels: 4
0.71 0.22 0.08
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.37, C:0.22, G:0.09, T:0.32
Consensus pattern (26 bp):
AAAATTACCAAATACCCTTGATTTAC
Found at i:63001694 original size:27 final size:27
Alignment explanation
Indices: 63001661--63002259 Score: 817
Period size: 27 Copynumber: 22.2 Consensus size: 27
63001651 CGATTTACAA
* *
63001661 AATTACTGAAATACCCTTG-AGGGGTAG
1 AATTACCGAAATACCCCTGTA-GGGTAG
* *
63001688 AAATACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
63001715 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
63001742 AATTACCGCAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
63001769 AATTATCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
63001796 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
63001823 AATTATCGCAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
63001850 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
63001877 AATTATCGGAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
63001904 AATTACCGGAATACCCCTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
63001931 AATTATCGCAATACCTCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
63001958 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
63001985 AATTACCGGAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
63002012 AATTATCC-CAATACCCCTGTAGGGTAG
1 AATTA-CCGAAATACCCCTGTAGGGTAG
*
63002039 AATTATCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
63002066 AATTACTGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
63002093 AATTATCGAAATACCCCTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
63002120 AATTACCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
63002147 AATTATCGCAATAACCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
63002174 AATTACCGAAATACTCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** * * * *
63002201 AATTACTAAAATATCCCTATAAGGTGG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
63002228 AATTACCGAGATA-CCTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
63002254 AATTAC
1 AATTAC
63002260 TATTTTGCCC
Statistics
Matches: 506, Mismatches: 63, Indels: 7
0.88 0.11 0.01
Matches are distributed among these distances:
26 14 0.03
27 489 0.97
28 3 0.01
ACGTcount: A:0.34, C:0.20, G:0.22, T:0.25
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:63003080 original size:22 final size:22
Alignment explanation
Indices: 63003050--63003093 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
63003040 TTTGGTATTT
63003050 GGGAATTGGTACGAAATGGTAA
1 GGGAATTGGTACGAAATGGTAA
*
63003072 GGGATTTGGTACGAAATGGTAA
1 GGGAATTGGTACGAAATGGTAA
63003094 TGGTTCAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.34, C:0.05, G:0.36, T:0.25
Consensus pattern (22 bp):
GGGAATTGGTACGAAATGGTAA
Found at i:63007633 original size:13 final size:13
Alignment explanation
Indices: 63007615--63007639 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
63007605 AAACCGTATG
63007615 CAATTTTTTTTTT
1 CAATTTTTTTTTT
63007628 CAATTTTTTTTT
1 CAATTTTTTTTT
63007640 CAAATTGACT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.08, G:0.00, T:0.76
Consensus pattern (13 bp):
CAATTTTTTTTTT
Found at i:63007956 original size:22 final size:22
Alignment explanation
Indices: 63007926--63007969 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
63007916 TTTGGTATTT
63007926 GGGAATTGGTACGAAATGGTAA
1 GGGAATTGGTACGAAATGGTAA
*
63007948 GGGATTTGGTACGAAATGGTAA
1 GGGAATTGGTACGAAATGGTAA
63007970 TGGTTCAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.34, C:0.05, G:0.36, T:0.25
Consensus pattern (22 bp):
GGGAATTGGTACGAAATGGTAA
Found at i:63012510 original size:13 final size:13
Alignment explanation
Indices: 63012492--63012516 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
63012482 AAACCGTATG
63012492 CAATTTTTTTTTT
1 CAATTTTTTTTTT
63012505 CAATTTTTTTTT
1 CAATTTTTTTTT
63012517 CAAATTGACT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.08, G:0.00, T:0.76
Consensus pattern (13 bp):
CAATTTTTTTTTT
Found at i:63012833 original size:22 final size:22
Alignment explanation
Indices: 63012803--63012846 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
63012793 TTTGGTATTT
63012803 GGGAATTGGTACGAAATGGTAA
1 GGGAATTGGTACGAAATGGTAA
*
63012825 GGGATTTGGTACGAAATGGTAA
1 GGGAATTGGTACGAAATGGTAA
63012847 TGGTTCAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.34, C:0.05, G:0.36, T:0.25
Consensus pattern (22 bp):
GGGAATTGGTACGAAATGGTAA
Found at i:63017390 original size:13 final size:12
Alignment explanation
Indices: 63017361--63017387 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
63017351 AAACCGTATG
63017361 CAATTTTTTTTT
1 CAATTTTTTTTT
63017373 CAATTTTTTTTT
1 CAATTTTTTTTT
63017385 CAA
1 CAA
63017388 ATTGACTTCG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.22, C:0.11, G:0.00, T:0.67
Consensus pattern (12 bp):
CAATTTTTTTTT
Found at i:63017701 original size:22 final size:22
Alignment explanation
Indices: 63017671--63017714 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
63017661 TTTGGTATTT
63017671 GGGAATTGGTACGAAATGGTAA
1 GGGAATTGGTACGAAATGGTAA
*
63017693 GGGATTTGGTACGAAATGGTAA
1 GGGAATTGGTACGAAATGGTAA
63017715 TGGTTCAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.34, C:0.05, G:0.36, T:0.25
Consensus pattern (22 bp):
GGGAATTGGTACGAAATGGTAA
Found at i:63019131 original size:26 final size:27
Alignment explanation
Indices: 63019109--63019219 Score: 145
Period size: 27 Copynumber: 4.1 Consensus size: 27
63019099 ATTCTGTTAA
63019109 GTGGCTATGCCATAAATATCTGTTCTG
1 GTGGCTATGCCATAAATATCTGTTCTG
* * *
63019136 GTGGCTCTACCA-CAATATCTGTTTCTG
1 GTGGCTATGCCATAAATATCTG-TTCTG
63019163 GTGGCTATGCCATAAATATCTGTTCTG
1 GTGGCTATGCCATAAATATCTGTTCTG
* *
63019190 GTGGCTCTGCCA-CAATATCTGTATCTG
1 GTGGCTATGCCATAAATATCTGT-TCTG
63019217 GTG
1 GTG
63019220 ACTCTGTCAC
Statistics
Matches: 73, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
26 17 0.23
27 48 0.66
28 8 0.11
ACGTcount: A:0.20, C:0.22, G:0.23, T:0.36
Consensus pattern (27 bp):
GTGGCTATGCCATAAATATCTGTTCTG
Found at i:63019139 original size:27 final size:26
Alignment explanation
Indices: 63019109--63019237 Score: 141
Period size: 27 Copynumber: 4.8 Consensus size: 26
63019099 ATTCTGTTAA
63019109 GTGGCTATGCCATAAATATCTGTTCTG
1 GTGGCTATGCCA-AAATATCTGTTCTG
* * *
63019136 GTGGCTCTACCACAATATCTGTTTCTG
1 GTGGCTATGCCAAAATATCTG-TTCTG
63019163 GTGGCTATGCCATAAATATCTGTTCTG
1 GTGGCTATGCCA-AAATATCTGTTCTG
* *
63019190 GTGGCTCTGCCACAATATCTGTATCTG
1 GTGGCTATGCCAAAATATCTGT-TCTG
* * * *
63019217 GTGACTCTGTCACAATATCTG
1 GTGGCTATGCCAAAATATCTG
63019238 ATAACTGAGC
Statistics
Matches: 89, Mismatches: 10, Indels: 6
0.85 0.10 0.06
Matches are distributed among these distances:
26 17 0.19
27 64 0.72
28 8 0.09
ACGTcount: A:0.21, C:0.22, G:0.21, T:0.36
Consensus pattern (26 bp):
GTGGCTATGCCAAAATATCTGTTCTG
Found at i:63019167 original size:54 final size:54
Alignment explanation
Indices: 63019109--63019219 Score: 204
Period size: 54 Copynumber: 2.1 Consensus size: 54
63019099 ATTCTGTTAA
*
63019109 GTGGCTATGCCATAAATATCTGTTCTGGTGGCTCTACCACAATATCTGTTTCTG
1 GTGGCTATGCCATAAATATCTGTTCTGGTGGCTCTACCACAATATCTGTATCTG
*
63019163 GTGGCTATGCCATAAATATCTGTTCTGGTGGCTCTGCCACAATATCTGTATCTG
1 GTGGCTATGCCATAAATATCTGTTCTGGTGGCTCTACCACAATATCTGTATCTG
63019217 GTG
1 GTG
63019220 ACTCTGTCAC
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
54 55 1.00
ACGTcount: A:0.20, C:0.22, G:0.23, T:0.36
Consensus pattern (54 bp):
GTGGCTATGCCATAAATATCTGTTCTGGTGGCTCTACCACAATATCTGTATCTG
Found at i:63019405 original size:6 final size:6
Alignment explanation
Indices: 63019368--63019473 Score: 92
Period size: 6 Copynumber: 17.3 Consensus size: 6
63019358 TTGGGATTAT
* * * *
63019368 ATTCTC ATTCTG ATTTTG ATTTTG -TTACCTG ATACTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG
* *
63019417 ATTCTG -TCACCTA ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCT-
1 ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG
63019465 AGTTCTG AT
1 A-TTCTG AT
63019474 AATGTTTCTT
Statistics
Matches: 83, Mismatches: 9, Indels: 16
0.77 0.08 0.15
Matches are distributed among these distances:
5 4 0.05
6 72 0.87
7 5 0.06
8 2 0.02
ACGTcount: A:0.19, C:0.18, G:0.14, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:63019409 original size:31 final size:31
Alignment explanation
Indices: 63019374--63019453 Score: 115
Period size: 31 Copynumber: 2.6 Consensus size: 31
63019364 TTATATTCTC
* * * *
63019374 ATTCTGATTTTGATTTTGTTACCTGATACTG
1 ATTCTGATTCTGATTCTGTCACCTAATACTG
*
63019405 ATTCTGATTCTGATTCTGTCACCTAATTCTG
1 ATTCTGATTCTGATTCTGTCACCTAATACTG
63019436 ATTCTGATTCTGATTCTG
1 ATTCTGATTCTGATTCTG
63019454 ATTCTGATTC
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 44 1.00
ACGTcount: A:0.19, C:0.17, G:0.15, T:0.49
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTCACCTAATACTG
Found at i:63026414 original size:27 final size:27
Alignment explanation
Indices: 63026383--63026560 Score: 214
Period size: 27 Copynumber: 6.6 Consensus size: 27
63026373 TAAATTGTAC
63026383 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
63026410 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
63026436 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
63026464 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
*
63026492 AGCACTAAGTGTGCGATTTGATTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
63026519 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
63026546 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
63026561 GACTCGATAT
Statistics
Matches: 131, Mismatches: 17, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
27 108 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:63026497 original size:82 final size:81
Alignment explanation
Indices: 63026384--63026539 Score: 242
Period size: 82 Copynumber: 1.9 Consensus size: 81
63026374 AAATTGTACA
*
63026384 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGTA-GCACTAAGTG
63026448 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
63026465 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTATGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGTAGCACTAAGTG
*
63026530 TGCGAGTTGA
65 TGCGAATTGA
63026540 TTATATAGCA
Statistics
Matches: 68, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
81 15 0.22
82 52 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:63026551 original size:82 final size:81
Alignment explanation
Indices: 63026380--63026560 Score: 238
Period size: 82 Copynumber: 2.2 Consensus size: 81
63026370 GATTAAATTG
*
63026380 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGATGCACTAA
63026445 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
63026461 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTATG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGAT-GCACT
* **
63026525 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
63026543 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
63026561 GACTCGATAT
Statistics
Matches: 85, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
81 18 0.21
82 67 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGATGCACTAA
GTGTGCGAATTGACCA
Found at i:63031840 original size:21 final size:20
Alignment explanation
Indices: 63031816--63031857 Score: 50
Period size: 20 Copynumber: 2.0 Consensus size: 20
63031806 TGGTCTCACA
63031816 TGGC-CATGTCACACGCCCGTG
1 TGGCTCATGTC-CA-GCCCGTG
*
63031837 TGGCTTATGTCCAGCCCGTG
1 TGGCTCATGTCCAGCCCGTG
63031857 T
1 T
63031858 TTATCGCGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
20 8 0.42
21 6 0.32
22 5 0.26
ACGTcount: A:0.12, C:0.33, G:0.29, T:0.26
Consensus pattern (20 bp):
TGGCTCATGTCCAGCCCGTG
Found at i:63036506 original size:46 final size:46
Alignment explanation
Indices: 63036456--63036577 Score: 208
Period size: 46 Copynumber: 2.7 Consensus size: 46
63036446 TGAGCATCCA
* *
63036456 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCG
*
63036502 AACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGCCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCG
*
63036548 AGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTA
63036578 GGGGCAGGTT
Statistics
Matches: 71, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 71 1.00
ACGTcount: A:0.21, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCG
Found at i:63041713 original size:38 final size:38
Alignment explanation
Indices: 63041641--63041874 Score: 134
Period size: 38 Copynumber: 6.0 Consensus size: 38
63041631 AATAAGTCTG
* *
63041641 AATAACATCGACACTAAGCCTGGTAGTCACTAAGCCTA
1 AATAACATCGGCACTAAGCCTGCTAGTCACTAAGCCTA
* *
63041679 AATATA-ATCGGCACTAAGCCTGCTA-TGCATTAAGCCTG
1 AATA-ACATCGGCACTAAGCCTGCTAGT-CACTAAGCCTA
* * * *
63041717 AATAACAGCGGCACTAAGCCTGAATAACACTGGCACTAAGCCTG
1 AATAACATCGGCACTAAGCCTG-CT---A--GTCACTAAGCCTA
** * * * * *
63041761 AATAACATCGGCACTAAGATTACTAGGCATTAAGCTTG
1 AATAACATCGGCACTAAGCCTGCTAGTCACTAAGCCTA
* * * * *
63041799 AACAACCTCGACATTAAGCTTGCTAAG-CACTAAGCCTA
1 AATAACATCGGCACTAAGCCTGCT-AGTCACTAAGCCTA
** * *
63041837 AATAACAAT-GGCACTAAGGGTGCTAGGCATTAAGCCTA
1 AATAAC-ATCGGCACTAAGCCTGCTAGTCACTAAGCCTA
63041875 CTAGGCACTA
Statistics
Matches: 152, Mismatches: 31, Indels: 26
0.73 0.15 0.12
Matches are distributed among these distances:
37 4 0.03
38 112 0.74
39 5 0.03
40 1 0.01
42 1 0.01
43 1 0.01
44 28 0.18
ACGTcount: A:0.36, C:0.24, G:0.18, T:0.22
Consensus pattern (38 bp):
AATAACATCGGCACTAAGCCTGCTAGTCACTAAGCCTA
Found at i:63041737 original size:22 final size:21
Alignment explanation
Indices: 63041709--63041778 Score: 113
Period size: 22 Copynumber: 3.2 Consensus size: 21
63041699 TGCTATGCAT
63041709 TAAGCCTGAATAACAGCGGCAC
1 TAAGCCTGAATAACA-CGGCAC
63041731 TAAGCCTGAATAACACTGGCAC
1 TAAGCCTGAATAACAC-GGCAC
63041753 TAAGCCTGAATAACATCGGCAC
1 TAAGCCTGAATAACA-CGGCAC
63041775 TAAG
1 TAAG
63041779 ATTACTAGGC
Statistics
Matches: 46, Mismatches: 0, Indels: 4
0.92 0.00 0.08
Matches are distributed among these distances:
21 1 0.02
22 44 0.96
23 1 0.02
ACGTcount: A:0.37, C:0.26, G:0.20, T:0.17
Consensus pattern (21 bp):
TAAGCCTGAATAACACGGCAC
Found at i:63041865 original size:16 final size:16
Alignment explanation
Indices: 63041859--63041903 Score: 63
Period size: 16 Copynumber: 2.8 Consensus size: 16
63041849 ACTAAGGGTG
*
63041859 CTAGGCATTAAGCCTA
1 CTAGGCACTAAGCCTA
*
63041875 CTAGGCACTAAACCTA
1 CTAGGCACTAAGCCTA
*
63041891 CTAGGCATTAAGC
1 CTAGGCACTAAGC
63041904 TTGAATAATA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.33, C:0.27, G:0.18, T:0.22
Consensus pattern (16 bp):
CTAGGCACTAAGCCTA
Found at i:63044734 original size:22 final size:22
Alignment explanation
Indices: 63044709--63044763 Score: 58
Period size: 22 Copynumber: 2.5 Consensus size: 22
63044699 AGAAAGGAAA
63044709 CAAGAAAGAAAAGGAAAAT-GAG
1 CAAGAAAGAAAA-GAAAATAGAG
**
63044731 CAAGAGGGAAAAGAAAATAGAG
1 CAAGAAAGAAAAGAAAATAGAG
**
63044753 TGAGAAAGAAA
1 CAAGAAAGAAA
63044764 TAGCAAAGAG
Statistics
Matches: 26, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
21 6 0.23
22 20 0.77
ACGTcount: A:0.62, C:0.04, G:0.29, T:0.05
Consensus pattern (22 bp):
CAAGAAAGAAAAGAAAATAGAG
Found at i:63044823 original size:21 final size:21
Alignment explanation
Indices: 63044799--63044841 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
63044789 AAAAGAGTGA
*
63044799 AAATGAGAGAAAA-GAAAAATT
1 AAATGA-AAAAAATGAAAAATT
63044820 AAATGAAAAAAATGAAAAATT
1 AAATGAAAAAAATGAAAAATT
63044841 A
1 A
63044842 GAGTGAGTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 5 0.25
21 15 0.75
ACGTcount: A:0.70, C:0.00, G:0.14, T:0.16
Consensus pattern (21 bp):
AAATGAAAAAAATGAAAAATT
Found at i:63047337 original size:26 final size:26
Alignment explanation
Indices: 63047308--63047372 Score: 71
Period size: 27 Copynumber: 2.5 Consensus size: 26
63047298 CTTAGTATGT
*
63047308 TTTAAATATGTCTTAATTTAGA-CATA
1 TTTAAATATGTCTTAATTCAGACCA-A
* *
63047334 TTTAAAACATGTTTTAATTCAGACCAA
1 TTT-AAATATGTCTTAATTCAGACCAA
63047361 -TTAAATATGTCT
1 TTTAAATATGTCT
63047373 AAGTTGTGTT
Statistics
Matches: 32, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
25 8 0.25
26 5 0.16
27 17 0.53
28 2 0.06
ACGTcount: A:0.38, C:0.11, G:0.08, T:0.43
Consensus pattern (26 bp):
TTTAAATATGTCTTAATTCAGACCAA
Found at i:63048836 original size:153 final size:153
Alignment explanation
Indices: 63048651--63048958 Score: 616
Period size: 153 Copynumber: 2.0 Consensus size: 153
63048641 GCATACCATT
63048651 TAATCTCAAAAAAATTAGCAAGCACACATATCATGATATCATCTAATCATAGCAATCAAGCCAAA
1 TAATCTCAAAAAAATTAGCAAGCACACATATCATGATATCATCTAATCATAGCAATCAAGCCAAA
63048716 TCACATAACCACTTCATAGGGCAATATCACATAACTTGGATAATTAGGCTTACCAGCCATGACTA
66 TCACATAACCACTTCATAGGGCAATATCACATAACTTGGATAATTAGGCTTACCAGCCATGACTA
63048781 TCATAAGCCACATCTTATGGCTA
131 TCATAAGCCACATCTTATGGCTA
63048804 TAATCTCAAAAAAATTAGCAAGCACACATATCATGATATCATCTAATCATAGCAATCAAGCCAAA
1 TAATCTCAAAAAAATTAGCAAGCACACATATCATGATATCATCTAATCATAGCAATCAAGCCAAA
63048869 TCACATAACCACTTCATAGGGCAATATCACATAACTTGGATAATTAGGCTTACCAGCCATGACTA
66 TCACATAACCACTTCATAGGGCAATATCACATAACTTGGATAATTAGGCTTACCAGCCATGACTA
63048934 TCATAAGCCACATCTTATGGCTA
131 TCATAAGCCACATCTTATGGCTA
63048957 TA
1 TA
63048959 TACAAGGTAC
Statistics
Matches: 155, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
153 155 1.00
ACGTcount: A:0.40, C:0.23, G:0.11, T:0.26
Consensus pattern (153 bp):
TAATCTCAAAAAAATTAGCAAGCACACATATCATGATATCATCTAATCATAGCAATCAAGCCAAA
TCACATAACCACTTCATAGGGCAATATCACATAACTTGGATAATTAGGCTTACCAGCCATGACTA
TCATAAGCCACATCTTATGGCTA
Found at i:63053145 original size:14 final size:16
Alignment explanation
Indices: 63053113--63053149 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
63053103 ATTTACATAA
*
63053113 CATATATCACATATTT
1 CATATATCACATATGT
63053129 CATATATCAC-T-TGT
1 CATATATCACATATGT
63053143 CATATAT
1 CATATAT
63053150 TATCATTTTC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
14 9 0.45
15 1 0.05
16 10 0.50
ACGTcount: A:0.35, C:0.19, G:0.03, T:0.43
Consensus pattern (16 bp):
CATATATCACATATGT
Found at i:63056897 original size:15 final size:16
Alignment explanation
Indices: 63056877--63056918 Score: 61
Period size: 15 Copynumber: 2.8 Consensus size: 16
63056867 GGAGCAATTG
63056877 AAAGAAAAAGAAT-AA
1 AAAGAAAAAGAATGAA
*
63056892 AAAG-AAAAGAGTGAA
1 AAAGAAAAAGAATGAA
63056907 AAAGAAAAAGAA
1 AAAGAAAAAGAA
63056919 AAGAAATCTG
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
14 7 0.30
15 10 0.43
16 6 0.26
ACGTcount: A:0.76, C:0.00, G:0.19, T:0.05
Consensus pattern (16 bp):
AAAGAAAAAGAATGAA
Found at i:63061716 original size:47 final size:47
Alignment explanation
Indices: 63061587--63061980 Score: 572
Period size: 47 Copynumber: 8.3 Consensus size: 47
63061577 GATTAAACCC
*
63061587 ATATGTGAATAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATATGTG-ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
*
63061635 ATATGTGAATAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATATGTG-ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
63061683 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TAT
*
63061732 ATATGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
* * *
63061779 ATGTGCGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TAT
*
63061828 ATATGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
** *
63061875 ATGCGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
* * * * * * *
63061922 ATATGTGACAGGGCCGAGTGGCCAATGTGATGGATGTGAAAGTGCAT
1 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
*
63061969 AAATGTGATAAG
1 ATATGTGATAAG
63061981 TCCCGAAGGG
Statistics
Matches: 317, Mismatches: 25, Indels: 9
0.90 0.07 0.03
Matches are distributed among these distances:
47 173 0.55
48 55 0.17
49 89 0.28
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.29
Consensus pattern (47 bp):
ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
Found at i:63061775 original size:96 final size:94
Alignment explanation
Indices: 63061587--63061980 Score: 572
Period size: 96 Copynumber: 4.1 Consensus size: 94
63061577 GATTAAACCC
* *
63061587 ATATGTGAATAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAATAGGGCCT
1 ATATGTG-ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG-ATAAGGCCT
63061652 AATGGCCGATGTGATGAATGTGAAAGTGTAT
64 AATGGCCGATGTGATGAATGTGAAAGTGTAT
*
63061683 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCTT
1 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCT
63061748 AATGGCCGATGTGATGAATGTGAAAGTGTAT
64 AATGGCCGATGTGATGAATGTGAAAGTGTAT
* * * *
63061779 ATGTGCGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCTT
1 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCT
63061844 AATGGCCGATGTGATGAATGTGAAAGTGTAT
64 AATGGCCGATGTGATGAATGTGAAAGTGTAT
** * * * * *
63061875 ATGCGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAG
1 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
* * *
63061940 TGGCCAATGTGATGGATGTGAAAGTGCAT
66 TGGCCGATGTGATGAATGTGAAAGTGTAT
*
63061969 AAATGTGATAAG
1 ATATGTGATAAG
63061981 TCCCGAAGGG
Statistics
Matches: 275, Mismatches: 21, Indels: 6
0.91 0.07 0.02
Matches are distributed among these distances:
94 51 0.19
95 36 0.13
96 178 0.65
97 10 0.04
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.29
Consensus pattern (94 bp):
ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
TGGCCGATGTGATGAATGTGAAAGTGTAT
Found at i:63061885 original size:143 final size:143
Alignment explanation
Indices: 63061603--63061980 Score: 584
Period size: 143 Copynumber: 2.6 Consensus size: 143
63061593 GAATAGGGCC
63061603 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAATAGGGCCTAATGGCCGATGTGATG
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG-ATAGGGCCTAATGGCCGATGTGATG
63061668 AATGTGAAAGTG-TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
65 AATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATAT
*
63061732 ATATGTGATAAGGCT
129 ATACGTGATAAGGCT
* * * *
63061747 TAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGCGATAAGGCCTAATAGCCGATGTGATGA
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAGGGCCTAATGGCCGATGTGATGA
*
63061812 ATGTGAAAGTGTATATATATGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTG-TATA
66 ATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATA
*
63061876 TGCGTGATAAGGCT
130 TACGTGATAAGGCT
* * * * *
63061890 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAATGTGATGG
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAGGGCCTAATGGCCGATGTGATGA
63061955 ATGTGAAAGTGCATA-A-ATGTGATAAG
66 ATGTGAAAGTG-ATATATATGTGATAAG
63061981 TCCCGAAGGG
Statistics
Matches: 215, Mismatches: 17, Indels: 7
0.90 0.07 0.03
Matches are distributed among these distances:
141 10 0.05
142 1 0.00
143 121 0.56
144 37 0.17
145 46 0.21
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.29
Consensus pattern (143 bp):
TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAGGGCCTAATGGCCGATGTGATGA
ATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATAT
ACGTGATAAGGCT
Found at i:63062154 original size:37 final size:37
Alignment explanation
Indices: 63062098--63062176 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
63062088 TCGAGCTCTA
* * *
63062098 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
63062135 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
63062172 AAGAC
1 AAGAC
63062177 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:63064160 original size:42 final size:43
Alignment explanation
Indices: 63064037--63064223 Score: 324
Period size: 43 Copynumber: 4.4 Consensus size: 43
63064027 TTGGTTTTCA
*
63064037 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGCGAGATTG
*
63064080 GCACTAAGTGTGCGGGCAATCAGTGTTCACGGTTGCGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGCGAGATTG
63064123 GCACTAAGTGTGCGGGCAA-AAGTGTTCACGGTTGCGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGCGAGATTG
* *
63064165 GCACTAAG-GTGCGGGCAATAAGTATTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGCGAGATTG
63064207 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
63064224 TTGAAATGCA
Statistics
Matches: 137, Mismatches: 5, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
41 10 0.07
42 59 0.43
43 68 0.50
ACGTcount: A:0.23, C:0.17, G:0.35, T:0.25
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGCGAGATTG
Found at i:63064238 original size:29 final size:29
Alignment explanation
Indices: 63064205--63064278 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
63064195 GTTGTGAGAT
* *
63064205 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
63064234 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
63064263 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
63064279 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:63064717 original size:80 final size:79
Alignment explanation
Indices: 63064572--63064743 Score: 249
Period size: 80 Copynumber: 2.2 Consensus size: 79
63064562 CATTTGAATG
* *
63064572 ATATCCGGGCTAAGTCCCGAAGGCAATTGAGCTAGTATTATATCCGGGCTAAGACCCGAAGGCAT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGAGCAAGTATTATATCCGGGCTAAGACCCGAAGGCAT
*
63064637 TTGTGCGAATTGA-T
66 TGGTGCGAATT-ACT
*
63064651 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGT-TGATATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGAGCAAGTAT--TATATCCGGGCTAAGACCCGAAGGC
*
63064715 ATTGGTGCGAGTTACT
64 ATTGGTGCGAATTACT
*
63064731 AAATCCGGGCTAA
1 ATATCCGGGCTAA
63064744 ATTCCGAAGA
Statistics
Matches: 84, Mismatches: 6, Indels: 5
0.88 0.06 0.05
Matches are distributed among these distances:
78 1 0.01
79 34 0.40
80 49 0.58
ACGTcount: A:0.28, C:0.21, G:0.27, T:0.23
Consensus pattern (79 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGAGCAAGTATTATATCCGGGCTAAGACCCGAAGGCAT
TGGTGCGAATTACT
Found at i:63064751 original size:40 final size:39
Alignment explanation
Indices: 63064572--63064832 Score: 221
Period size: 40 Copynumber: 6.6 Consensus size: 39
63064562 CATTTGAATG
* * *
63064572 ATATCCGGGCTAAGTCCCGAAGGCAATTGAGCTAG-T-ATT
1 ATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTTGA-T
*
63064611 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGAGTTGAT
*
63064651 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGAT
1 ATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTTGAT
63064691 ATATCCGGGCTAAGACCCGAAGGCATTGGTGCGAGTT-ACT
1 ATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTTGA-T
* * * *
63064731 AAATCCGGGCTAA-ATTCCGAAGAGCATTCGTGCTAG-TGAG
1 ATATCCGGGCTAAGA-CCCGAAG-GCATT-GTGCGAGTTGAT
* * ** *
63064771 GTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTG-G-TGTT
1 ATATCCGGGCTAAGACCCGAAG-GCATT-GTGC-GAGTTGAT
* *
63064811 ATATCCGGGCTAGGTCCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
63064833 AGCAATCATG
Statistics
Matches: 188, Mismatches: 23, Indels: 21
0.81 0.10 0.09
Matches are distributed among these distances:
38 1 0.01
39 34 0.18
40 139 0.74
41 14 0.07
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.24
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTTGAT
Found at i:63064784 original size:120 final size:119
Alignment explanation
Indices: 63064572--63064838 Score: 274
Period size: 120 Copynumber: 2.2 Consensus size: 119
63064562 CATTTGAATG
* * *
63064572 ATATCCGGGCTAAGTCCCGAAGGCAATTGAGCTAGTATTATATCCGGGCTAAGACCCGAAGGCAT
1 ATATCCGGGCTAAGTCCCGAAGGCAATTGAGCGAGTACTAAATCCGGGCTAAGACCCGAAGGCAT
* * * * *
63064637 TTGTGCGAATTGATATATCCGGGCTAAGACCCGAAG-GCAATT-GTGCAAGTTGAT
66 TCGTGCGAAGTGAGATATCCGGACTAAGACCCGAAGAGC-ATTCGTGC-AGGTGAT
* * *
63064691 ATATCCGGGCTAAGACCCGAAGGC-ATTGGTGCGAGTTACTAAATCCGGGCTAA-ATTCCGAAGA
1 ATATCCGGGCTAAGTCCCGAAGGCAATT-GAGCGAG-TACTAAATCCGGGCTAAGA-CCCGAAG-
* * ** * *
63064754 GCATTCGTGC-TAGTGAGGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTGGTGTT
62 GCATTCGTGCGAAGTGAGATATCCGGACTAAGACCCGAAGAGCATTCGTGCAGGTGAT
*
63064811 ATATCCGGGCTAGGTCCCGAAGAGCAAT
1 ATATCCGGGCTAAGTCCCGAAG-GCAAT
63064839 CATGCTGGTG
Statistics
Matches: 121, Mismatches: 19, Indels: 13
0.79 0.12 0.08
Matches are distributed among these distances:
118 3 0.02
119 29 0.24
120 70 0.58
121 17 0.14
122 2 0.02
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.24
Consensus pattern (119 bp):
ATATCCGGGCTAAGTCCCGAAGGCAATTGAGCGAGTACTAAATCCGGGCTAAGACCCGAAGGCAT
TCGTGCGAAGTGAGATATCCGGACTAAGACCCGAAGAGCATTCGTGCAGGTGAT
Found at i:63073867 original size:51 final size:51
Alignment explanation
Indices: 63073781--63074074 Score: 184
Period size: 51 Copynumber: 5.7 Consensus size: 51
63073771 TCGGCCCTGT
*
63073781 CACATTATACACTTCTCACATTCAT-TCACATCGGCC-ATTAAG-CCTTCATCA
1 CACA-TATACACTT-TCACATTCATCGCACATCGGCCGATTAAGCCCTT-ATCA
63073832 C-CATATAGCACTTTCACATTCATCCGCACATCGGCCGATTAAGCCCTTATCA
1 CACATATA-CACTTTCACATTCAT-CGCACATCGGCCGATTAAGCCCTTATCA
* * * *
63073884 CATATATATACACTTTCACATTCAT--CACAT-GTCGCTATTAAGGCCTTATC-
1 C--ACATATACACTTTCACATTCATCGCACATCGGC-CGATTAAGCCCTTATCA
* * ***
63073934 GACATATACACTTTCTCCATTCCAAATCACAGTCGGGCC-ATTAAG-CCTTATCA
1 CACATATACACTTTC-ACATT-CATCGCACA-TC-GGCCGATTAAGCCCTTATCA
* * * *
63073987 CATATATTATACACTTTCACATCCAT-GCACATCGG-C-ATTGTAGGCCTTATCA
1 C--ACA-TATACACTTTCACATTCATCGCACATCGGCCGATT-AAGCCCTTATCA
*
63074039 CATATATACAGCTTTCACCATTCAT-GCACAGTCGGC
1 CACATATACA-CTTTCA-CATTCATCGCACA-TCGGC
63074075 TTAGTCAAAG
Statistics
Matches: 199, Mismatches: 18, Indels: 50
0.75 0.07 0.19
Matches are distributed among these distances:
48 13 0.07
49 24 0.12
50 24 0.12
51 45 0.23
52 37 0.19
53 15 0.08
54 18 0.09
55 12 0.06
56 11 0.06
ACGTcount: A:0.29, C:0.30, G:0.10, T:0.31
Consensus pattern (51 bp):
CACATATACACTTTCACATTCATCGCACATCGGCCGATTAAGCCCTTATCA
Found at i:63073904 original size:103 final size:104
Alignment explanation
Indices: 63073784--63074044 Score: 283
Period size: 103 Copynumber: 2.5 Consensus size: 104
63073774 GCCCTGTCAC
63073784 ATTATACACTTCTCACATTCATTCACATCGGCCATTAA-GCCTTCATC-ACCATATAGCACTTTC
1 ATTATACACTT-TCACATTCATTCACATCGGCCATTAAGGCCTT-ATCGA-CATATA-CACTTTC
**
63073847 -ACATT-CATCCGCACA-TC-GGCCGATTAAGCCCTTATCACATAT
62 TACATTCCA-AAGCACAGTCGGGCC-ATTAAG-CCTTATCACATAT
* *
63073889 A-TATACACTTTCACATTCA-TCACAT-GTCGCTATTAAGGCCTTATCGACATATACACTTTCTC
1 ATTATACACTTTCACATTCATTCACATCG--GCCATTAAGGCCTTATCGACATATACACTTTCTA
*
63073951 CATTCCAAATCACAGTCGGGCCATTAAGCCTTATCACATAT
64 CATTCCAAAGCACAGTCGGGCCATTAAGCCTTATCACATAT
* * *
63073992 ATTATACACTTTCACATCCATGCACATCGG-CATTGTAGGCCTTATC-ACATATA
1 ATTATACACTTTCACATTCATTCACATCGGCCATT-AAGGCCTTATCGACATATA
63074045 TACAGCTTTC
Statistics
Matches: 135, Mismatches: 9, Indels: 26
0.79 0.05 0.15
Matches are distributed among these distances:
101 1 0.01
102 13 0.10
103 57 0.42
104 53 0.39
105 10 0.07
106 1 0.01
ACGTcount: A:0.30, C:0.30, G:0.10, T:0.31
Consensus pattern (104 bp):
ATTATACACTTTCACATTCATTCACATCGGCCATTAAGGCCTTATCGACATATACACTTTCTACA
TTCCAAAGCACAGTCGGGCCATTAAGCCTTATCACATAT
Found at i:63074069 original size:104 final size:103
Alignment explanation
Indices: 63073784--63074073 Score: 298
Period size: 104 Copynumber: 2.8 Consensus size: 103
63073774 GCCCTGTCAC
* *
63073784 ATTATACACTTCTCACATTCATTCACATCGGCCA-TTAAGCCTTCATCACCATATA-GCACTTTC
1 ATTATACACTT-TCACATTCA-TCACATCGG-CATTTAGGCCTT-ATCA-CATATATACACTTTC
63073847 A-CATTCATCCGCACA-TC-GGCCGATTAAGCCCTTATCACATAT
61 ACCATTCAT--GCACAGTCGGGCCGATTAAGCCCTTATCACATAT
* *
63073889 A-TATACACTTTCACATTCATCACAT-GTCGCTATTAAGGCCTTATCGAC--ATATACACTTTCT
1 ATTATACACTTTCACATTCATCACATCG--GC-ATTTAGGCCTTATC-ACATATATACACTTTCA
63073950 CCATTCCAAAT-CACAGTCGGGCC-ATTAAG-CCTTATCACATAT
62 CCATT-C--ATGCACAGTCGGGCCGATTAAGCCCTTATCACATAT
*
63073992 ATTATACACTTTCACATCCATGCACATCGGCATTGTAGGCCTTATCACATATATACAGCTTTCAC
1 ATTATACACTTTCACATTCAT-CACATCGGCATT-TAGGCCTTATCACATATATACA-CTTTCAC
63074057 CATTCATGCACAGTCGG
63 CATTCATGCACAGTCGG
63074074 CTTAGTCAAA
Statistics
Matches: 158, Mismatches: 7, Indels: 41
0.77 0.03 0.20
Matches are distributed among these distances:
101 4 0.03
102 14 0.09
103 44 0.28
104 65 0.41
105 18 0.11
106 13 0.08
ACGTcount: A:0.29, C:0.30, G:0.10, T:0.31
Consensus pattern (103 bp):
ATTATACACTTTCACATTCATCACATCGGCATTTAGGCCTTATCACATATATACACTTTCACCAT
TCATGCACAGTCGGGCCGATTAAGCCCTTATCACATAT
Found at i:63077294 original size:42 final size:44
Alignment explanation
Indices: 63077141--63077327 Score: 253
Period size: 43 Copynumber: 4.3 Consensus size: 44
63077131 GCAGAATTAA
*
63077141 AGGAAGCA-TTGACAAC-TCATGCATAATT-ATGGGAGAAATTTG
1 AGGAAGCATTTGACAACATCATGCATAATTCATGGAAG-AATTTG
63077183 AGGAAGCATTTGACCAACATCAATGC-TAATTCATGGACAGAATTTG
1 AGGAAGCATTTGA-CAACATC-ATGCATAATTCATGGA-AGAATTTG
63077229 AGG-AGCATTTGACAACATCATGCATAATT-ATGGAAGAATTTG
1 AGGAAGCATTTGACAACATCATGCATAATTCATGGAAGAATTTG
*
63077271 AGGAAGCATTTGACAACAT-ATGCATAATTCATGGAAGAATTTTA
1 AGGAAGCATTTGACAACATCATGCATAATTCATGGAAGAA-TTTG
63077315 AGGAAGCTATTTG
1 AGGAAGC-ATTTG
63077328 GCCATCAACC
Statistics
Matches: 132, Mismatches: 2, Indels: 19
0.86 0.01 0.12
Matches are distributed among these distances:
42 29 0.22
43 37 0.28
44 26 0.20
45 21 0.16
46 17 0.13
47 2 0.02
ACGTcount: A:0.38, C:0.13, G:0.21, T:0.28
Consensus pattern (44 bp):
AGGAAGCATTTGACAACATCATGCATAATTCATGGAAGAATTTG
Found at i:63077327 original size:88 final size:88
Alignment explanation
Indices: 63077132--63077366 Score: 281
Period size: 88 Copynumber: 2.7 Consensus size: 88
63077122 GAAGTGAACG
* *
63077132 CAGAATTAAAGGAAGCA-TTGACAACTCATGCATAATTATGGGAGAAATTTGAGGAAGCATTTGA
1 CAGAATTTAAGGAAGCATTTGACAACTCATGCATAATTATGGAAGAAATTTGAGGAAGCATTTGA
63077196 CCAACATCAATGCTAATTCATGGA
66 CCAACAT-AATGCTAATTCATGGA
*
63077220 CAGAATTTGAGG-AGCATTTGACAACATCATGCATAATTATGGAAG-AATTTGAGGAAGCATTTG
1 CAGAATTTAAGGAAGCATTTGACAAC-TCATGCATAATTATGGAAGAAATTTGAGGAAGCATTTG
63077283 A-CAACAT-ATGCATAATTCATGGA
65 ACCAACATAATGC-TAATTCATGGA
*
63077306 -AGAATTTTAAGGAAGCTATTTGGCCATCAAC-CA-GCATAATTTATGGAACAAA-TTGAGGAAG
1 CAGAA-TTTAAGGAAGC-ATTT-G--A-CAACTCATGCATAA-TTATGGAAGAAATTTGAGGAAG
63077367 ACCAATGGCG
Statistics
Matches: 130, Mismatches: 5, Indels: 22
0.83 0.03 0.14
Matches are distributed among these distances:
85 8 0.06
86 17 0.13
87 13 0.10
88 41 0.32
89 25 0.19
90 19 0.15
91 3 0.02
92 4 0.03
ACGTcount: A:0.39, C:0.14, G:0.21, T:0.26
Consensus pattern (88 bp):
CAGAATTTAAGGAAGCATTTGACAACTCATGCATAATTATGGAAGAAATTTGAGGAAGCATTTGA
CCAACATAATGCTAATTCATGGA
Found at i:63080717 original size:13 final size:13
Alignment explanation
Indices: 63080699--63080723 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
63080689 TCTCGTTAAG
63080699 GATAAAATATAAA
1 GATAAAATATAAA
63080712 GATAAAATATAA
1 GATAAAATATAA
63080724 GATTATTTGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.68, C:0.00, G:0.08, T:0.24
Consensus pattern (13 bp):
GATAAAATATAAA
Found at i:63099572 original size:20 final size:20
Alignment explanation
Indices: 63099526--63099573 Score: 53
Period size: 20 Copynumber: 2.4 Consensus size: 20
63099516 TTTAGCTTGG
*
63099526 TTCAGCTCACCAAATTTTAT
1 TTCAGCTCACCAAATTTTAA
* *
63099546 TTTAGCTCA-CATGATTTTAA
1 TTCAGCTCACCA-AATTTTAA
63099566 TTCAGCTC
1 TTCAGCTC
63099574 GTTTGAGCTT
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
19 2 0.09
20 21 0.91
ACGTcount: A:0.27, C:0.23, G:0.08, T:0.42
Consensus pattern (20 bp):
TTCAGCTCACCAAATTTTAA
Found at i:63101103 original size:22 final size:22
Alignment explanation
Indices: 63101073--63101116 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
63101063 TTTGGTATTT
63101073 GGGAATTGGTACGAAATGGTAA
1 GGGAATTGGTACGAAATGGTAA
*
63101095 GGGATTTGGTACGAAATGGTAA
1 GGGAATTGGTACGAAATGGTAA
63101117 TGGTTCAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.34, C:0.05, G:0.36, T:0.25
Consensus pattern (22 bp):
GGGAATTGGTACGAAATGGTAA
Found at i:63104206 original size:45 final size:45
Alignment explanation
Indices: 63104157--63104389 Score: 403
Period size: 45 Copynumber: 5.2 Consensus size: 45
63104147 TCGGCCATGG
* * * *
63104157 TGCTTCCTCAATTTGTTCCATAAATTATGCATGATGTTGGCCAAA
1 TGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGTCAAA
* *
63104202 TGCTTCCTTAAATTCTTCCATGAATTATGCATAATGTTGGTCAAA
1 TGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGTCAAA
63104247 TGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGTCAAA
1 TGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGTCAAA
63104292 TGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGTCAAA
1 TGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGTCAAA
*
63104337 TGCTTCCTCAAATTCTCCCATGAATTATGCATGATGTTGGTCAAA
1 TGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGTCAAA
63104382 TGCTTCCT
1 TGCTTCCT
63104390 TAATTTCATG
Statistics
Matches: 179, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 179 1.00
ACGTcount: A:0.26, C:0.21, G:0.15, T:0.38
Consensus pattern (45 bp):
TGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGTCAAA
Found at i:63108916 original size:22 final size:22
Alignment explanation
Indices: 63108888--63108947 Score: 68
Period size: 22 Copynumber: 2.7 Consensus size: 22
63108878 TATTGGATTT
* *
63108888 AAAAAAAAGAAGAAATTCAAAA
1 AAAAAAAAGAAAAAAATCAAAA
**
63108910 AAAAAAATTAAAAAAATCAAAA
1 AAAAAAAAGAAAAAAATCAAAA
63108932 AAAAAGAAA-AAAAAAA
1 AAAAA-AAAGAAAAAAA
63108948 GAAGTGACAA
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
22 30 0.94
23 2 0.06
ACGTcount: A:0.83, C:0.03, G:0.05, T:0.08
Consensus pattern (22 bp):
AAAAAAAAGAAAAAAATCAAAA
Found at i:63109891 original size:18 final size:18
Alignment explanation
Indices: 63109870--63109904 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
63109860 AGAAAAGAAA
63109870 ATTGA-AAAAGAAATTGAG
1 ATTGAGAAAA-AAATTGAG
63109888 ATTGAGAAAAAAATTGA
1 ATTGAGAAAAAAATTGA
63109905 AAAAGAAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.57, C:0.00, G:0.20, T:0.23
Consensus pattern (18 bp):
ATTGAGAAAAAAATTGAG
Found at i:63123688 original size:22 final size:22
Alignment explanation
Indices: 63123637--63123702 Score: 73
Period size: 21 Copynumber: 3.0 Consensus size: 22
63123627 GGTATTTGGG
* *
63123637 AATTGGTTCGAAATAGTATGG-
1 AATTGGTACGAAATGGTATGGT
63123658 AATTGGTACGAAATGGTATGGT
1 AATTGGTACGAAATGGTATGGT
*
63123680 ATTTGGTAC-AAATTGGTAATGGT
1 AATTGGTACGAAA-TGGT-ATGGT
63123703 TCAAAAGGAC
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
21 22 0.56
22 12 0.31
23 5 0.13
ACGTcount: A:0.32, C:0.05, G:0.29, T:0.35
Consensus pattern (22 bp):
AATTGGTACGAAATGGTATGGT
Found at i:63126875 original size:14 final size:13
Alignment explanation
Indices: 63126843--63126889 Score: 53
Period size: 13 Copynumber: 3.7 Consensus size: 13
63126833 TCGTAGCTTC
63126843 AAAAAAAAAAGTT
1 AAAAAAAAAAGTT
63126856 AAAAAAAAAAGTTT
1 AAAAAAAAAAG-TT
**
63126870 CGAAAAAAAAG--
1 AAAAAAAAAAGTT
63126881 AAAAAAAAA
1 AAAAAAAAA
63126890 TTTGCAAAAA
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
11 7 0.24
13 11 0.38
14 11 0.38
ACGTcount: A:0.79, C:0.02, G:0.09, T:0.11
Consensus pattern (13 bp):
AAAAAAAAAAGTT
Found at i:63126884 original size:23 final size:21
Alignment explanation
Indices: 63126856--63126906 Score: 66
Period size: 23 Copynumber: 2.3 Consensus size: 21
63126846 AAAAAAAGTT
*
63126856 AAAAAAAAAAGTTTCGAAAAAA
1 AAAAAAAAAAATTT-GAAAAAA
*
63126878 AAGAAAAAAAAATTTGCAAAAA
1 AA-AAAAAAAAATTTGAAAAAA
63126900 AAAAAAA
1 AAAAAAA
63126907 TTGCATACGG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
21 5 0.19
22 10 0.38
23 11 0.42
ACGTcount: A:0.76, C:0.04, G:0.08, T:0.12
Consensus pattern (21 bp):
AAAAAAAAAAATTTGAAAAAA
Found at i:63126902 original size:16 final size:16
Alignment explanation
Indices: 63126881--63126911 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
63126871 GAAAAAAAAG
*
63126881 AAAAAAAAATTTGCAA
1 AAAAAAAAAATTGCAA
63126897 AAAAAAAAAATTGCA
1 AAAAAAAAAATTGCA
63126912 TACGGTCTAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.71, C:0.06, G:0.06, T:0.16
Consensus pattern (16 bp):
AAAAAAAAAATTGCAA
Found at i:63129191 original size:24 final size:25
Alignment explanation
Indices: 63129164--63129217 Score: 60
Period size: 23 Copynumber: 2.2 Consensus size: 25
63129154 ATGAGTGATA
*
63129164 AAAAAAGAGA-GAGTGATTCAAAA-G
1 AAAAAAGAAACGAGTGA-TCAAAATG
*
63129188 -AAAAAGAAACGAGTGATGAAAATG
1 AAAAAAGAAACGAGTGATCAAAATG
63129212 AAAAAA
1 AAAAAA
63129218 AGAATTTGTT
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
23 13 0.52
24 7 0.28
25 5 0.20
ACGTcount: A:0.63, C:0.04, G:0.22, T:0.11
Consensus pattern (25 bp):
AAAAAAGAAACGAGTGATCAAAATG
Found at i:63143403 original size:48 final size:48
Alignment explanation
Indices: 63143263--63143419 Score: 262
Period size: 49 Copynumber: 3.2 Consensus size: 48
63143253 CTTACTTTGA
* *
63143263 GAATGTAAAAGTGTATATAT-GTGATAAGGCCTAATGGCCGATGTGAT
1 GAATGTGAAAGTGTATATATAGTGATAGGGCCTAATGGCCGATGTGAT
63143310 GAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCGATGTGAT
1 GAATGTGAAAGTGTATATATA-GTGATAGGGCCTAATGGCCGATGTGAT
*
63143359 GAATGTGAAAGTGTGTATATAGTGATAGGGCCTAATGGCCGATGTGAT
1 GAATGTGAAAGTGTATATATAGTGATAGGGCCTAATGGCCGATGTGAT
63143407 GAATGTGATAAGT
1 GAATGTGA-AAGT
63143420 CCCGAAGGGC
Statistics
Matches: 104, Mismatches: 3, Indels: 4
0.94 0.03 0.04
Matches are distributed among these distances:
47 19 0.18
48 35 0.34
49 50 0.48
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.30
Consensus pattern (48 bp):
GAATGTGAAAGTGTATATATAGTGATAGGGCCTAATGGCCGATGTGAT
Found at i:63143593 original size:37 final size:37
Alignment explanation
Indices: 63143537--63143615 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
63143527 CCGAGCTCTA
* *
63143537 AAGACCCGATGACTACGTGTGGGGATT-TCGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTAT-GTCCGGGT
*
63143574 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
63143611 AAGAC
1 AAGAC
63143616 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.24, C:0.20, G:0.32, T:0.24
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:63148630 original size:49 final size:50
Alignment explanation
Indices: 63148550--63148795 Score: 298
Period size: 49 Copynumber: 4.9 Consensus size: 50
63148540 AGCTATTGTG
*
63148550 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATT
* * * *
63148600 -GGTCGCATGTGTGGTACTAAGTGCAGGCTACTATGCGTACCTGATAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAA-TT
* * * ** * **
63148650 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTATCAGATGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATT
* * *
63148700 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATT
* * *
63148750 -GGTCGCATGTGTAGTACTAAGTGCAGACTACTATGCGTACCAGATA
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATA
63148796 GCTTCGGCTA
Statistics
Matches: 165, Mismatches: 29, Indels: 5
0.83 0.15 0.03
Matches are distributed among these distances:
49 82 0.50
50 47 0.28
51 36 0.22
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.29
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATT
Found at i:63167149 original size:49 final size:49
Alignment explanation
Indices: 63167010--63167237 Score: 178
Period size: 49 Copynumber: 4.7 Consensus size: 49
63167000 TTGAGACAAG
* * * *
63167010 AGCTAGTGTAAGACATGTTTGGGACAT-GCATCGGCCTCGAGATAT-ACA
1 AGCTAGTGTAAGACCTGTCTGGGACATGGCATCAGCCTCGATATATGA-A
** * * *
63167058 AGCTAGTGTAAGACCTGTCTGAAACATGGCATCAACAC-CGATAGATGAG
1 AGCTAGTGTAAGACCTGTCTGGGACATGGCATCAGC-CTCGATATATGAA
*
63167107 AGCTAGTGTAAGACCTGTCTGGGACATGGCATTAGCCTCGATATATGAA
1 AGCTAGTGTAAGACCTGTCTGGGACATGGCATCAGCCTCGATATATGAA
* ** * * * * * ** **
63167156 AGTTAGCATAAGATCTGTCTAGGACACGACATC-GACTTTA-ATATGCT
1 AGCTAGTGTAAGACCTGTCTGGGACATGGCATCAGCCTCGATATATGAA
* *
63167203 AGCCAGTGTAAGACCATGTTTGGGACATGGCATCA
1 AGCTAGTGTAAGACC-TGTCTGGGACATGGCATCA
63167238 ACATCTTATC
Statistics
Matches: 137, Mismatches: 37, Indels: 11
0.74 0.20 0.06
Matches are distributed among these distances:
47 15 0.11
48 42 0.31
49 78 0.57
50 2 0.01
ACGTcount: A:0.31, C:0.19, G:0.25, T:0.25
Consensus pattern (49 bp):
AGCTAGTGTAAGACCTGTCTGGGACATGGCATCAGCCTCGATATATGAA
Found at i:63171803 original size:28 final size:28
Alignment explanation
Indices: 63171771--63171869 Score: 153
Period size: 28 Copynumber: 3.5 Consensus size: 28
63171761 TCGACAGCAG
*
63171771 CTAAGACACATTAAAAACACGTATTAAA
1 CTAAGACACATTAAAAACATGTATTAAA
*
63171799 CTAAGACACATTAATAACATGTATTAAA
1 CTAAGACACATTAAAAACATGTATTAAA
* * *
63171827 CTAAGACACATTAATAATATGTAATAAA
1 CTAAGACACATTAAAAACATGTATTAAA
63171855 CTAAGACACATTAAA
1 CTAAGACACATTAAA
63171870 CACTTTAATT
Statistics
Matches: 66, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 66 1.00
ACGTcount: A:0.53, C:0.15, G:0.07, T:0.25
Consensus pattern (28 bp):
CTAAGACACATTAAAAACATGTATTAAA
Found at i:63173998 original size:27 final size:27
Alignment explanation
Indices: 63173957--63174010 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
63173947 TGTCATGTGA
* *
63173957 AATTGAATGGCAAATTATTGTTACATG
1 AATTGAATGGCAAATTACTATTACATG
**
63173984 AATTGAATGTTAAATTACTATTACATG
1 AATTGAATGGCAAATTACTATTACATG
63174011 GGTTGTATGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.07, G:0.15, T:0.39
Consensus pattern (27 bp):
AATTGAATGGCAAATTACTATTACATG
Found at i:63174370 original size:49 final size:48
Alignment explanation
Indices: 63174255--63174377 Score: 140
Period size: 48 Copynumber: 2.5 Consensus size: 48
63174245 TGAGGTCACG
* * * * **
63174255 TGTGTAGTATTAAGTGCAGGTTACTACGTGTATCAGATGGTTAGGTCA
1 TGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAATTAGGTCA
* * *
63174303 CGTATAGTACTAAGTGCAGGCTACTACATGTACCGGATAATT-GGTCATA
1 TGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAATTAGGTC--A
63174352 TGTGTAGTACTAAGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
63174378 TGCGTACCAG
Statistics
Matches: 62, Mismatches: 11, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
47 4 0.06
48 33 0.53
49 25 0.40
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.32
Consensus pattern (48 bp):
TGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAATTAGGTCA
Found at i:63179566 original size:47 final size:46
Alignment explanation
Indices: 63179472--63179586 Score: 140
Period size: 47 Copynumber: 2.5 Consensus size: 46
63179462 TTAGTTTAAG
* * * **
63179472 TATTTAATTGTCTTAAGTTTATTTAATGTGTTCTAATTAGTTTAGC
1 TATTTAATTGTCCTAAGTTTATTTAATATGTTCTAATTAATACAGC
* *
63179518 TATTTAATATGTCCTAAGTTTATTTAATATGTTTTAGTTAATACAGC
1 TATTTAAT-TGTCCTAAGTTTATTTAATATGTTCTAATTAATACAGC
*
63179565 TACTTAATGTGTCCTAAGTTTA
1 TATTTAAT-TGTCCTAAGTTTA
63179587 GTCAACTTAA
Statistics
Matches: 59, Mismatches: 9, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
46 8 0.14
47 51 0.86
ACGTcount: A:0.29, C:0.09, G:0.12, T:0.50
Consensus pattern (46 bp):
TATTTAATTGTCCTAAGTTTATTTAATATGTTCTAATTAATACAGC
Found at i:63182214 original size:40 final size:40
Alignment explanation
Indices: 63182163--63182827 Score: 1161
Period size: 40 Copynumber: 16.6 Consensus size: 40
63182153 CATTTGAATG
*
63182163 ATATCCGGGCTAAGAACCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
63182203 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
63182243 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
63182283 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
63182323 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
63182363 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
63182403 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
*
63182443 ATATCCGGGATAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
*
63182483 ATATCCGGGCTAAGACCTGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
*
63182523 ATATCCGGGCTAAGACCTGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
*
63182563 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGATTTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
*
63182603 ATATCCGGGATAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
* *
63182643 ATATCCGGGATAAGACCCGAAGGCATTTGTGCGAACTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
* * *
63182683 ATATCCGGGCTAAGACCCGACGACATTTGTGCAAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
*
63182723 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-AAGTTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAA-TTGAT
* * *
63182763 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
* *
63182803 ATACCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCA
63182828 ATTGAGCTTG
Statistics
Matches: 600, Mismatches: 23, Indels: 4
0.96 0.04 0.01
Matches are distributed among these distances:
39 2 0.00
40 597 1.00
41 1 0.00
ACGTcount: A:0.28, C:0.20, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
Found at i:63197880 original size:14 final size:14
Alignment explanation
Indices: 63197843--63197882 Score: 50
Period size: 14 Copynumber: 3.1 Consensus size: 14
63197833 ACTTATTGCC
63197843 TATT-TTTTA-TAT
1 TATTATTTTATTAT
*
63197855 TA-TATATTATTAT
1 TATTATTTTATTAT
63197868 TATTATTTTATTAT
1 TATTATTTTATTAT
63197882 T
1 T
63197883 TAACCTGTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
11 1 0.04
12 6 0.26
13 5 0.22
14 11 0.48
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (14 bp):
TATTATTTTATTAT
Found at i:63201712 original size:48 final size:48
Alignment explanation
Indices: 63201660--63201878 Score: 210
Period size: 48 Copynumber: 4.6 Consensus size: 48
63201650 AAGTGCTCAC
* * ** **
63201660 ATCATGGCCCAAAGCCAACTCAATATATGTCGCACCCAAAGTGATAAT
1 ATCATGGCCCGAAGCCAAATCAATATAACTCGCACCCAAAGTGCCAAT
* * * * * *
63201708 ATCATGGCCTGTAGCCAAATCAGTGA-AGCTCGCACCTAAAGTGCCGAT
1 ATCATGGCCCGAAGCCAAATCAAT-ATAACTCGCACCCAAAGTGCCAAT
* *
63201756 ATCATGGCCCGAAGCCAAATCAA-AGTAACTCGCATCCGAAGTGCCAAT
1 ATCATGGCCCGAAGCCAAATCAATA-TAACTCGCACCCAAAGTGCCAAT
* * * * *
63201804 ATCATAGCTCGAAGCCAAATCAA-AGTAACTCACACCCGAAGTGCCCAT
1 ATCATGGCCCGAAGCCAAATCAATA-TAACTCGCACCCAAAGTGCCAAT
*
63201852 ATCATGGCCCAAAGCCAAATCAATATA
1 ATCATGGCCCGAAGCCAAATCAATATA
63201879 TCCCCTAATG
Statistics
Matches: 140, Mismatches: 27, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
46 1 0.01
48 137 0.98
49 2 0.01
ACGTcount: A:0.36, C:0.28, G:0.17, T:0.19
Consensus pattern (48 bp):
ATCATGGCCCGAAGCCAAATCAATATAACTCGCACCCAAAGTGCCAAT
Found at i:63201805 original size:96 final size:95
Alignment explanation
Indices: 63201650--63201878 Score: 248
Period size: 96 Copynumber: 2.4 Consensus size: 95
63201640 CTCGCACACT
* * * ** * *
63201650 AAGTGCTCACATCATGGCCCAAAGCCAACTCAATATATGTCGCACCCAAAGTGATAATATCATGG
1 AAGTGCCCATATCATGGCCCAAAGCCAAATCAATATAACTCGCACCCAAAGTGACAATATCATAG
* * *
63201715 C-CTGTAGCCAAATC-AGTGAAGCTCGCACCTA
66 CTC-GAAGCCAAATCAAGT-AA-CTCACACCCA
* * * * *
63201746 AAGTGCCGATATCATGGCCCGAAGCCAAATCAA-AGTAACTCGCATCCGAAGTGCCAATATCATA
1 AAGTGCCCATATCATGGCCCAAAGCCAAATCAATA-TAACTCGCACCCAAAGTGACAATATCATA
*
63201810 GCTCGAAGCCAAATCAAAGTAACTCACACCCG
65 GCTCGAAGCCAAATC-AAGTAACTCACACCCA
63201842 AAGTGCCCATATCATGGCCCAAAGCCAAATCAATATA
1 AAGTGCCCATATCATGGCCCAAAGCCAAATCAATATA
63201879 TCCCCTAATG
Statistics
Matches: 110, Mismatches: 18, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
95 1 0.01
96 102 0.93
97 4 0.04
98 3 0.03
ACGTcount: A:0.36, C:0.28, G:0.17, T:0.19
Consensus pattern (95 bp):
AAGTGCCCATATCATGGCCCAAAGCCAAATCAATATAACTCGCACCCAAAGTGACAATATCATAG
CTCGAAGCCAAATCAAGTAACTCACACCCA
Found at i:63205244 original size:27 final size:26
Alignment explanation
Indices: 63205196--63205254 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 26
63205186 GTGAGGCTCT
*
63205196 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
63205223 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
63205249 CAGATA
1 CAGATA
63205255 CATATATGTG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.36, C:0.20, G:0.24, T:0.20
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:63205274 original size:31 final size:32
Alignment explanation
Indices: 63205217--63205278 Score: 90
Period size: 31 Copynumber: 2.0 Consensus size: 32
63205207 ACGAAGTCAC
* *
63205217 CAGATACAGATATTGTGGCTAGGCCACCAGAA
1 CAGATACAGATATTGTGGCGAAGCCACCAGAA
*
63205249 CAGATACATATA-TGTGGCGAAGCCACCAGA
1 CAGATACAGATATTGTGGCGAAGCCACCAGA
63205279 TTGCAGTGAG
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
31 16 0.59
32 11 0.41
ACGTcount: A:0.35, C:0.23, G:0.24, T:0.18
Consensus pattern (32 bp):
CAGATACAGATATTGTGGCGAAGCCACCAGAA
Found at i:63205970 original size:27 final size:27
Alignment explanation
Indices: 63205940--63206058 Score: 157
Period size: 27 Copynumber: 4.4 Consensus size: 27
63205930 GGGGCAAAAT
* * *
63205940 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
63205967 GGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * * *
63205994 GGTAATTCCATCCTACAGGGGCATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
63206021 GGTAATTCTACCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
63206048 GGTAATTCTAC
1 GGTAATTCTAC
63206059 AACTTATCCG
Statistics
Matches: 81, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 81 1.00
ACGTcount: A:0.24, C:0.23, G:0.20, T:0.33
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:63214250 original size:27 final size:26
Alignment explanation
Indices: 63214202--63214261 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
63214192 GCGAGGCTGC
*
63214202 CAGATATTGTGACAAAGTCACCAGATA
1 CAGATATTGTGACAAAGCCACCAGA-A
* * *
63214229 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACAAAGCCACCAGAA
63214255 CAGATAT
1 CAGATAT
63214262 ATATATATGT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.37, C:0.20, G:0.22, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACAAAGCCACCAGAA
Found at i:63215033 original size:27 final size:27
Alignment explanation
Indices: 63215003--63215170 Score: 221
Period size: 27 Copynumber: 6.3 Consensus size: 27
63214993 GGGGCAAAAT
* * *
63215003 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
63215030 GGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
63215057 GGTAATTCTATCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
63215084 GATAATTCTACCCTGCAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
** *
63215111 AATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
63215138 GGTAATTCTACCTTAC-AGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
63215164 GGTAATT
1 GGTAATT
63215171 ATACAACTTA
Statistics
Matches: 127, Mismatches: 14, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
26 16 0.13
27 111 0.87
ACGTcount: A:0.25, C:0.21, G:0.20, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:63218021 original size:42 final size:42
Alignment explanation
Indices: 63217962--63218186 Score: 194
Period size: 42 Copynumber: 5.3 Consensus size: 42
63217952 TCCCAGACGT
* * *
63217962 GGTCTTACATGTAATCAAATATCGA-GCCACTGTCCTAGACAG
1 GGTCTTACACGAAATCAAATA-CAATGCCACTGTCCTAGACAG
* *
63218004 GGTCTTACACGAAATCAAATACAATGCCAAC-ATCCCAGAC-G
1 GGTCTTACACGAAATCAAATACAATGCC-ACTGTCCTAGACAG
* * * * *
63218045 TGGTCTTACATGTAATCAAATATCGA-GCCACTATCCCAGACAG
1 -GGTCTTACACGAAATCAAATA-CAATGCCACTGTCCTAGACAG
* *
63218088 GGTCATACACGAAATCAAATACAATGCCAAC-GTCCTAGACAT
1 GGTCTTACACGAAATCAAATACAATGCC-ACTGTCCTAGACAG
* *
63218130 GGTCGTACACGTAAATCATAA-ACCAATGCCAATGTCCCT-GACAG
1 GGTCTTACACG-AAATCA-AATA-CAATGCCACTGT-CCTAGACAG
63218174 GGTCTTACACGAA
1 GGTCTTACACGAA
63218187 CACATATATC
Statistics
Matches: 151, Mismatches: 19, Indels: 25
0.77 0.10 0.13
Matches are distributed among these distances:
41 7 0.05
42 99 0.66
43 17 0.11
44 25 0.17
45 3 0.02
ACGTcount: A:0.35, C:0.26, G:0.17, T:0.22
Consensus pattern (42 bp):
GGTCTTACACGAAATCAAATACAATGCCACTGTCCTAGACAG
Found at i:63218086 original size:84 final size:84
Alignment explanation
Indices: 63217941--63218186 Score: 350
Period size: 84 Copynumber: 2.9 Consensus size: 84
63217931 AAAGCTCGTG
*
63217941 CAATGCCAACATCCCAGACGTGGTCTTACATGTAATCAAATATCGAGCCACTGTCCTAGACAGGG
1 CAATGCCAACATCCCAGACGTGGTCTTACATGTAATCAAATATCGAGCCACTGTCCCAGACAGGG
63218006 TCTTACACGAAATCAAATA
66 TCTTACACGAAATCAAATA
*
63218025 CAATGCCAACATCCCAGACGTGGTCTTACATGTAATCAAATATCGAGCCACTATCCCAGACAGGG
1 CAATGCCAACATCCCAGACGTGGTCTTACATGTAATCAAATATCGAGCCACTGTCCCAGACAGGG
*
63218090 TCATACACGAAATCAAATA
66 TCTTACACGAAATCAAATA
* * * * * * * * *
63218109 CAATGCCAACGTCCTAGACATGGTCGTACACGTAAATCATAA-ACCAATGCCAATGTCCCTGACA
1 CAATGCCAACATCCCAGACGTGGTCTTACATGT-AATCA-AATATCGA-GCCACTGTCCCAGACA
63218173 GGGTCTTACACGAA
63 GGGTCTTACACGAA
63218187 CACATATATC
Statistics
Matches: 145, Mismatches: 14, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
84 109 0.75
85 8 0.06
86 28 0.19
ACGTcount: A:0.35, C:0.27, G:0.17, T:0.21
Consensus pattern (84 bp):
CAATGCCAACATCCCAGACGTGGTCTTACATGTAATCAAATATCGAGCCACTGTCCCAGACAGGG
TCTTACACGAAATCAAATA
Done.