Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 196 of 349
Found at i:63404060 original size:12 final size:13
Alignment explanation
Indices: 63404031--63404064 Score: 52
Period size: 12 Copynumber: 2.7 Consensus size: 13
63404021 CTCATTTTCT
63404031 CTTCTTTCTTCAA
1 CTTCTTTCTTCAA
63404044 CTTCTTT-TTCAA
1 CTTCTTTCTTCAA
*
63404056 TTTCTTTCT
1 CTTCTTTCT
63404065 GTTTCACATT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
12 11 0.58
13 8 0.42
ACGTcount: A:0.12, C:0.26, G:0.00, T:0.62
Consensus pattern (13 bp):
CTTCTTTCTTCAA
Found at i:63406413 original size:22 final size:23
Alignment explanation
Indices: 63406388--63406447 Score: 63
Period size: 22 Copynumber: 2.7 Consensus size: 23
63406378 TGGACTGAAT
63406388 ATAAAAATTTAAACTAAAT-AAA
1 ATAAAAATTTAAACTAAATAAAA
*
63406410 ATAAATAA-ATAAA-TAAATAAAA
1 ATAAA-AATTTAAACTAAATAAAA
*
63406432 ATAAAACTTTACAACT
1 ATAAAAATTTA-AACT
63406448 TGGGCCACTT
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
21 6 0.20
22 19 0.63
23 4 0.13
24 1 0.03
ACGTcount: A:0.67, C:0.07, G:0.00, T:0.27
Consensus pattern (23 bp):
ATAAAAATTTAAACTAAATAAAA
Found at i:63406415 original size:4 final size:4
Alignment explanation
Indices: 63406397--63406430 Score: 50
Period size: 4 Copynumber: 8.0 Consensus size: 4
63406387 TATAAAAATT
63406397 TAAA CTAAA TAAAA TAAA TAAA TAAA TAAA TAAA
1 TAAA -TAAA T-AAA TAAA TAAA TAAA TAAA TAAA
63406431 AATAAAACTT
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
4 20 0.71
5 8 0.29
ACGTcount: A:0.74, C:0.03, G:0.00, T:0.24
Consensus pattern (4 bp):
TAAA
Found at i:63411607 original size:27 final size:27
Alignment explanation
Indices: 63411576--63411753 Score: 214
Period size: 27 Copynumber: 6.6 Consensus size: 27
63411566 TAAATTGTAC
63411576 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
63411603 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
63411629 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
63411657 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
*
63411685 AGCACTAAGTGTGCGATTTGATTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
63411712 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
63411739 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
63411754 GACTCGATAT
Statistics
Matches: 131, Mismatches: 17, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
27 108 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:63411690 original size:82 final size:81
Alignment explanation
Indices: 63411577--63411732 Score: 242
Period size: 82 Copynumber: 1.9 Consensus size: 81
63411567 AAATTGTACA
*
63411577 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGTA-GCACTAAGTG
63411641 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
63411658 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTATGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGTAGCACTAAGTG
*
63411723 TGCGAGTTGA
65 TGCGAATTGA
63411733 TTATATAGCA
Statistics
Matches: 68, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
81 15 0.22
82 52 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:63411744 original size:82 final size:81
Alignment explanation
Indices: 63411573--63411753 Score: 238
Period size: 82 Copynumber: 2.2 Consensus size: 81
63411563 GATTAAATTG
*
63411573 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGATGCACTAA
63411638 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
63411654 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTATG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGAT-GCACT
* **
63411718 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
63411736 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
63411754 GACTCGATAT
Statistics
Matches: 85, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
81 18 0.21
82 67 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGATGCACTAA
GTGTGCGAATTGACCA
Found at i:63415936 original size:60 final size:60
Alignment explanation
Indices: 63415836--63415974 Score: 156
Period size: 60 Copynumber: 2.3 Consensus size: 60
63415826 AACTGTGTTA
* * * * *
63415836 ATATGGGCAAGGCCCAATATATCTCGACTTGTAATAGGGCTACGGCCCGGATTGATACTG
1 ATATGGGCTAGGCCCAGTATATCTCGAATTGTAATAGGGCTACGGCCCAGATTAATACTG
* * * *
63415896 ATATGGGCTAGGCCCAGTATA-CTCTGATATTGTAA-GGGGCTATGGCCTAGATTAATATTG
1 ATATGGGCTAGGCCCAGTATATCTC-GA-ATTGTAATAGGGCTACGGCCCAGATTAATACTG
63415956 ATATGGGCTAAGGCCCAGT
1 ATATGGGCT-AGGCCCAGT
63415975 TAACTCTAAT
Statistics
Matches: 67, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
59 3 0.04
60 49 0.73
61 15 0.22
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (60 bp):
ATATGGGCTAGGCCCAGTATATCTCGAATTGTAATAGGGCTACGGCCCAGATTAATACTG
Found at i:63418512 original size:19 final size:19
Alignment explanation
Indices: 63418488--63418558 Score: 61
Period size: 19 Copynumber: 3.4 Consensus size: 19
63418478 TTTTAGTACG
63418488 AGCTTACTAAGCTTTTGAA
1 AGCTTACTAAGCTTTTGAA
* * *
63418507 AGCTTACTTTGATGATTTTAGTATG
1 AGCTTAC--T-AAGCTTTT-G-A-A
63418532 AGCTTACTAAGCTTTTGAA
1 AGCTTACTAAGCTTTTGAA
63418551 AGCTTACT
1 AGCTTACT
63418559 TTGTGTGTAT
Statistics
Matches: 40, Mismatches: 6, Indels: 12
0.69 0.10 0.21
Matches are distributed among these distances:
19 15 0.38
20 1 0.03
21 2 0.05
22 12 0.30
23 2 0.05
24 1 0.03
25 7 0.17
ACGTcount: A:0.28, C:0.14, G:0.17, T:0.41
Consensus pattern (19 bp):
AGCTTACTAAGCTTTTGAA
Found at i:63418535 original size:44 final size:44
Alignment explanation
Indices: 63418471--63418561 Score: 173
Period size: 44 Copynumber: 2.1 Consensus size: 44
63418461 TTATATATTG
63418471 TTGATGATTTTAGTACGAGCTTACTAAGCTTTTGAAAGCTTACT
1 TTGATGATTTTAGTACGAGCTTACTAAGCTTTTGAAAGCTTACT
*
63418515 TTGATGATTTTAGTATGAGCTTACTAAGCTTTTGAAAGCTTACT
1 TTGATGATTTTAGTACGAGCTTACTAAGCTTTTGAAAGCTTACT
63418559 TTG
1 TTG
63418562 TGTGTATGTT
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 46 1.00
ACGTcount: A:0.26, C:0.12, G:0.19, T:0.43
Consensus pattern (44 bp):
TTGATGATTTTAGTACGAGCTTACTAAGCTTTTGAAAGCTTACT
Found at i:63423341 original size:27 final size:26
Alignment explanation
Indices: 63423310--63423494 Score: 181
Period size: 26 Copynumber: 7.0 Consensus size: 26
63423300 ACATAGGGGA
* *
63423310 AAAACAATCAATTTACCATATAAAGGC
1 AAAACAATCATTTTACCA-ATAAGGGC
* * * *
63423337 GAAACAGTCATTTTATCAATTAGGGC
1 AAAACAATCATTTTACCAATAAGGGC
* * *
63423363 AAAATAGTCATTTTACCACATAAGGGT
1 AAAACAATCATTTTACCA-ATAAGGGC
*
63423390 AAAATAATCATTTTACCACATAAGGGC
1 AAAACAATCATTTTACCA-ATAAGGGC
* *
63423417 AAAACAATCATTTTATCAATTAGGGC
1 AAAACAATCATTTTACCAATAAGGGC
* * *
63423443 AAAACAATCATTTTATCAATTAGGGA
1 AAAACAATCATTTTACCAATAAGGGC
* *
63423469 AAAATAGTCATTTTACCATATAAGGG
1 AAAACAATCATTTTACCA-ATAAGGG
63423495 AGAAATAGTC
Statistics
Matches: 135, Mismatches: 21, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
26 68 0.50
27 67 0.50
ACGTcount: A:0.43, C:0.15, G:0.13, T:0.29
Consensus pattern (26 bp):
AAAACAATCATTTTACCAATAAGGGC
Found at i:63423371 original size:26 final size:26
Alignment explanation
Indices: 63423342--63423520 Score: 189
Period size: 27 Copynumber: 6.8 Consensus size: 26
63423332 AAGGCGAAAC
63423342 AGTCATTTTATCAATTAGGGCAAAAT
1 AGTCATTTTATCAATTAGGGCAAAAT
* * *
63423368 AGTCATTTTACCACATAAGGGTAAAAT
1 AGTCATTTTATCA-ATTAGGGCAAAAT
* * * *
63423395 AATCATTTTACCACATAAGGGCAAAAC
1 AGTCATTTTATCA-ATTAGGGCAAAAT
* *
63423422 AATCATTTTATCAATTAGGGCAAAAC
1 AGTCATTTTATCAATTAGGGCAAAAT
* *
63423448 AATCATTTTATCAATTAGGGAAAAAT
1 AGTCATTTTATCAATTAGGGCAAAAT
* *
63423474 AGTCATTTTACCATATAAGGG-AGAAAT
1 AGTCATTTTATCA-ATTAGGGCA-AAAT
*
63423501 AGTCATTTTATCATTTAGGG
1 AGTCATTTTATCAATTAGGG
63423521 GTCCAGGCAC
Statistics
Matches: 134, Mismatches: 16, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
26 65 0.49
27 69 0.51
ACGTcount: A:0.40, C:0.13, G:0.15, T:0.32
Consensus pattern (26 bp):
AGTCATTTTATCAATTAGGGCAAAAT
Found at i:63423500 original size:27 final size:26
Alignment explanation
Indices: 63423321--63423510 Score: 184
Period size: 27 Copynumber: 7.2 Consensus size: 26
63423311 AAACAATCAA
* * *
63423321 TTTACCATATAAAGGCGAAACAGTCAT
1 TTTACCA-ATAAGGGCAAAATAGTCAT
* *
63423348 TTTATCAATTAGGGCAAAATAGTCAT
1 TTTACCAATAAGGGCAAAATAGTCAT
* *
63423374 TTTACCACATAAGGGTAAAATAATCAT
1 TTTACCA-ATAAGGGCAAAATAGTCAT
* *
63423401 TTTACCACATAAGGGCAAAACAATCAT
1 TTTACCA-ATAAGGGCAAAATAGTCAT
* * * *
63423428 TTTATCAATTAGGGCAAAACAATCAT
1 TTTACCAATAAGGGCAAAATAGTCAT
* * *
63423454 TTTATCAATTAGGGAAAAATAGTCAT
1 TTTACCAATAAGGGCAAAATAGTCAT
63423480 TTTACCATATAAGGG-AGAAATAGTCAT
1 TTTACCA-ATAAGGGCA-AAATAGTCAT
63423507 TTTA
1 TTTA
63423511 TCATTTAGGG
Statistics
Matches: 142, Mismatches: 18, Indels: 6
0.86 0.11 0.04
Matches are distributed among these distances:
26 69 0.49
27 73 0.51
ACGTcount: A:0.42, C:0.14, G:0.14, T:0.31
Consensus pattern (26 bp):
TTTACCAATAAGGGCAAAATAGTCAT
Found at i:63425005 original size:8 final size:8
Alignment explanation
Indices: 63424981--63425012 Score: 50
Period size: 8 Copynumber: 4.2 Consensus size: 8
63424971 TTCTTGCACT
63424981 TTAATTTA
1 TTAATTTA
63424989 TT-A-TTA
1 TTAATTTA
63424995 TTAATTTA
1 TTAATTTA
63425003 TTAATTTA
1 TTAATTTA
63425011 TT
1 TT
63425013 TTTTCCTTCT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
6 5 0.23
7 2 0.09
8 15 0.68
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (8 bp):
TTAATTTA
Found at i:63440559 original size:48 final size:46
Alignment explanation
Indices: 63440472--63440614 Score: 148
Period size: 44 Copynumber: 3.0 Consensus size: 46
63440462 AATCTTACAC
* *
63440472 ATATCGATGCCGATGCCATATCCCAGATATGGTCTTACACTAGCTCTCAT
1 ATATCG-TGCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTC-CAT
*
63440522 ATATCCGTGCCGATGCATGTCCCAGACATGTCTTACACTAG---CAC
1 ATAT-CGTGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCCAT
* * *
63440566 ATCTCGTAGCTGATGCATGTCCCAGACATGTCTTACACTGGCTCACAT
1 ATATCGT-GCCGATGCATGTCCCAGACATGTCTTACACTAGCTC-CAT
63440614 A
1 A
63440615 ACAGCAGTGT
Statistics
Matches: 80, Mismatches: 7, Indels: 14
0.79 0.07 0.14
Matches are distributed among these distances:
43 3 0.04
44 36 0.45
48 15 0.19
49 12 0.15
50 12 0.15
51 2 0.03
ACGTcount: A:0.25, C:0.29, G:0.17, T:0.28
Consensus pattern (46 bp):
ATATCGTGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCCAT
Found at i:63441258 original size:31 final size:31
Alignment explanation
Indices: 63441223--63441289 Score: 107
Period size: 31 Copynumber: 2.2 Consensus size: 31
63441213 ATTTATTAGA
63441223 TTTCTATAAGGTTTAAGACATGATAAACATT
1 TTTCTATAAGGTTTAAGACATGATAAACATT
* * *
63441254 TTTCTATAAGGTTTAAGATATGCTGAACATT
1 TTTCTATAAGGTTTAAGACATGATAAACATT
63441285 TTTCT
1 TTTCT
63441290 CTTCTACGGA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.33, C:0.10, G:0.13, T:0.43
Consensus pattern (31 bp):
TTTCTATAAGGTTTAAGACATGATAAACATT
Found at i:63447282 original size:13 final size:13
Alignment explanation
Indices: 63447264--63447292 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
63447254 AATAGTTGTG
63447264 TGTTATTTAATTA
1 TGTTATTTAATTA
63447277 TGTTATTTAATTA
1 TGTTATTTAATTA
63447290 TGT
1 TGT
63447293 AGGTTAGCCG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.28, C:0.00, G:0.10, T:0.62
Consensus pattern (13 bp):
TGTTATTTAATTA
Found at i:63459996 original size:33 final size:34
Alignment explanation
Indices: 63459921--63460002 Score: 103
Period size: 34 Copynumber: 2.4 Consensus size: 34
63459911 GTTTCAGTTA
* *
63459921 GGGCCTTAGCCCATTTCAGAACCAGAAACAATGT
1 GGGCCTAAGCCCATTTCAGAAACAGAAACAATGT
* * * *
63459955 GGGCCTAAGCCCATTTTAGAAACAGTATCAGTG-
1 GGGCCTAAGCCCATTTCAGAAACAGAAACAATGT
63459988 GGGCCTAAGCCCATT
1 GGGCCTAAGCCCATT
63460003 ACAAAATCAG
Statistics
Matches: 42, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
33 15 0.36
34 27 0.64
ACGTcount: A:0.29, C:0.26, G:0.23, T:0.22
Consensus pattern (34 bp):
GGGCCTAAGCCCATTTCAGAAACAGAAACAATGT
Found at i:63461648 original size:55 final size:54
Alignment explanation
Indices: 63461526--63461779 Score: 265
Period size: 55 Copynumber: 4.8 Consensus size: 54
63461516 ATTAGGGTTT
* *
63461526 AAGGATACCATGTAAGACCATG-CAAGGCATGGCAATTGGTAAGGTT-TCTAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGC-ATTGGTAA-GTTCTATAAGGC
* * *
63461580 AAGGATATCATGTAAGACCATGTCAAGACATTGCATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTT-CTATAAGGC
* * * *
63461635 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGC
1 -AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTCTATAAGGC
* * *
63461688 AAGGATACCATGTAAGACCATGTCAAGATATGGCAATGGTAAGTT-T-CAA---
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTCTATAAGGC
* * * *
63461737 AAGGATACCACGTAAGACCATGACAAGTCATGGCAATGGTAAG
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAG
63461780 GTACCCGCGT
Statistics
Matches: 171, Mismatches: 23, Indels: 17
0.81 0.11 0.08
Matches are distributed among these distances:
49 39 0.23
52 6 0.04
53 44 0.26
54 29 0.17
55 49 0.29
56 4 0.02
ACGTcount: A:0.36, C:0.17, G:0.25, T:0.22
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTCTATAAGGC
Found at i:63461731 original size:108 final size:109
Alignment explanation
Indices: 63461533--63461732 Score: 307
Period size: 108 Copynumber: 1.8 Consensus size: 109
63461523 TTTAAGGATA
*
63461533 CCATGTAAGACCATGCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGATATCATGTAAGAC
1 CCATGTAAGACCATGCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGATACCATGTAAGAC
* *
63461598 CATGTCAAGACATTGCATTGATAAGTTACTATAAGGCAAAGGTC
66 CATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
*
63461642 CCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAG
1 CCATGTAAGACCATG-CAAGGCATGGCAATTGGTAAGGTTTC-TAAGGCAAGGATACCATGTAAG
* *
63461704 ACCATGTCAAGATATGGCAATGGTAAGTT
64 ACCATGTCAAGACATGGCAATGATAAGTT
63461733 TCAAAAGGAT
Statistics
Matches: 83, Mismatches: 6, Indels: 5
0.88 0.06 0.05
Matches are distributed among these distances:
107 3 0.04
108 47 0.57
109 22 0.27
110 11 0.13
ACGTcount: A:0.34, C:0.17, G:0.25, T:0.24
Consensus pattern (109 bp):
CCATGTAAGACCATGCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGATACCATGTAAGAC
CATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
Found at i:63461873 original size:23 final size:24
Alignment explanation
Indices: 63461847--63461891 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
63461837 AAGGTAAGGT
63461847 AAGGTAAGACAAGTT-ATGCTAAA
1 AAGGTAAGACAAGTTCATGCTAAA
*
63461870 AAGGTAAGGCAAGTTCATGCTA
1 AAGGTAAGACAAGTTCATGCTA
63461892 GATGAGCAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 14 0.70
24 6 0.30
ACGTcount: A:0.42, C:0.11, G:0.24, T:0.22
Consensus pattern (24 bp):
AAGGTAAGACAAGTTCATGCTAAA
Found at i:63469253 original size:108 final size:109
Alignment explanation
Indices: 63469055--63469254 Score: 307
Period size: 108 Copynumber: 1.8 Consensus size: 109
63469045 TTTAAGGATA
*
63469055 CCATGTAAGACCATGCAAGGAATGGCAATTGGTAAGGTTTCTAAGGCAAGGATATCATGTAAGAC
1 CCATGTAAGACCATGCAAGGAATGGCAATTGGTAAGGTTTCTAAGGCAAGGATACCATGTAAGAC
*
63469120 CATGTCAAGACATCGCATTGATAAGTTACTATAAGGCAAAGGTC
66 CATGTCAAGACATCGCAATGATAAGTTACTATAAGGCAAAGGTC
* *
63469164 CCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAG
1 CCATGTAAGACCATG-CAAGGAATGGCAATTGGTAAGGTTTC-TAAGGCAAGGATACCATGTAAG
* *
63469226 ACCATGTCAAGACATGGCAATGGTAAGTT
64 ACCATGTCAAGACATCGCAATGATAAGTT
63469255 TCAAAAGGAT
Statistics
Matches: 83, Mismatches: 6, Indels: 5
0.88 0.06 0.05
Matches are distributed among these distances:
107 3 0.04
108 48 0.58
109 22 0.27
110 10 0.12
ACGTcount: A:0.34, C:0.17, G:0.25, T:0.23
Consensus pattern (109 bp):
CCATGTAAGACCATGCAAGGAATGGCAATTGGTAAGGTTTCTAAGGCAAGGATACCATGTAAGAC
CATGTCAAGACATCGCAATGATAAGTTACTATAAGGCAAAGGTC
Found at i:63469395 original size:23 final size:24
Alignment explanation
Indices: 63469369--63469413 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
63469359 AAGGTAAGGT
*
63469369 AAGGTAAGACGAGTT-ATGCTAAA
1 AAGGTAAGACAAGTTCATGCTAAA
63469392 AAGGTAAGACAAGTTCATGCTA
1 AAGGTAAGACAAGTTCATGCTA
63469414 GATGAGCAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 14 0.70
24 6 0.30
ACGTcount: A:0.42, C:0.11, G:0.24, T:0.22
Consensus pattern (24 bp):
AAGGTAAGACAAGTTCATGCTAAA
Found at i:63469513 original size:16 final size:16
Alignment explanation
Indices: 63469492--63469522 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
63469482 ATAAATTTGA
63469492 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
63469508 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
63469523 AATGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:63475903 original size:49 final size:47
Alignment explanation
Indices: 63475825--63476662 Score: 1399
Period size: 47 Copynumber: 17.6 Consensus size: 47
63475815 TATTTGAATA
63475825 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
63475872 AATGTGAAATTGTATATATATGTGATAAGGCCTATTGGCCGATGTGATG
1 AATGTGAAA--GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
63475921 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
63475968 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * *
63476017 AATGTGAAAGTGTACATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
63476064 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
63476111 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
63476160 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
63476209 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * *
63476258 AATGTGAAAGTGTACATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
63476305 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
63476354 AATGTGAAAGTATATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
63476401 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
63476448 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
63476495 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
63476542 AATGTGAAAGTGTATATATGTGATAAGGTCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * *
63476589 AATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAACGTGATTG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGA-TG
*
63476637 -ATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
63476663 TCCCGAAGGG
Statistics
Matches: 753, Mismatches: 29, Indels: 18
0.94 0.04 0.02
Matches are distributed among these distances:
47 471 0.63
48 2 0.00
49 280 0.37
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:63475933 original size:96 final size:94
Alignment explanation
Indices: 63475825--63476662 Score: 1372
Period size: 96 Copynumber: 8.8 Consensus size: 94
63475815 TATTTGAATA
63475825 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAATTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA--GTATATA
*
63475890 TATGTGATAAGGCCTATTGGCCGATGTGATG
64 TATGTGATAAGGCCTAATGGCCGATGTGATG
63475921 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA--GTATATA
63475986 TATGTGATAAGGCCTAATGGCCGATGTGATG
64 TATGTGATAAGGCCTAATGGCCGATGTGATG
* * * *
63476017 AATGTGAAAGTGTACATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTATATATA
63476082 TGTGATAAGGCCTAATGGCCGATGTGATG
66 TGTGATAAGGCCTAATGGCCGATGTGATG
63476111 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA--GTATA
63476176 TATATGTGATAAGGCCTAATGGCCGATGTGATG
62 TATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
63476209 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTACA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTATATA
* *
63476274 TATGTGATAAGGCCGAATGGCCAATGTGATG
64 TATGTGATAAGGCCTAATGGCCGATGTGATG
63476305 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTATATA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTATATA
*
63476370 TATGTGATAAGGCCTAATAGCCGATGTGATG
64 TATGTGATAAGGCCTAATGGCCGATGTGATG
*
63476401 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTATATATA
63476466 TGTGATAAGGCCTAATGGCCGATGTGATG
66 TGTGATAAGGCCTAATGGCCGATGTGATG
*
63476495 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTATATATA
*
63476560 TGTGATAAGGTCTAATGGCCGATGTGATG
66 TGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * * *
63476589 AATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAACGTGATTG-ATGTGAAAGTGTATAA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGA-TGAATGTGAAAGTATATAT
63476653 ATGTGATAAG
65 ATGTGATAAG
63476663 TCCCGAAGGG
Statistics
Matches: 709, Mismatches: 28, Indels: 12
0.95 0.04 0.02
Matches are distributed among these distances:
94 287 0.40
95 2 0.00
96 325 0.46
98 95 0.13
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (94 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTATATATA
TGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:63478606 original size:40 final size:40
Alignment explanation
Indices: 63478086--63478594 Score: 808
Period size: 40 Copynumber: 12.8 Consensus size: 40
63478076 GAGAATTGAG
*
63478086 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
*
63478126 AGTGATATATCCGTGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
* *
63478166 AGTGATATATCCAGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
*
63478206 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCTTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
63478246 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
* * *
63478286 AGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
63478326 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
63478366 AGTGATATATCC-GGCTAAGT-CCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
* * *
63478404 AGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
*
63478444 AGTGATGTATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
63478484 AGTGATATATCCGGGCTAAGT-CCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
* ** *
63478523 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
* * * * *
63478563 GGTGTTATATCCGGGCTAGGTCTCGAAGAGCA
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCA
63478595 ATCATGCTGG
Statistics
Matches: 435, Mismatches: 31, Indels: 6
0.92 0.07 0.01
Matches are distributed among these distances:
38 29 0.07
39 52 0.12
40 354 0.81
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
Found at i:63478811 original size:25 final size:25
Alignment explanation
Indices: 63478770--63478821 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
63478760 TGTGTATTAA
63478770 TGAATGAATAAGAGCACTATGTGTG
1 TGAATGAATAAGAGCACTATGTGTG
* *
63478795 TGAATG-ATTAGAGGCACTGTGTGTG
1 TGAATGAATAAGA-GCACTATGTGTG
63478820 TG
1 TG
63478822 CGAATTCCTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 5 0.21
25 19 0.79
ACGTcount: A:0.29, C:0.08, G:0.33, T:0.31
Consensus pattern (25 bp):
TGAATGAATAAGAGCACTATGTGTG
Found at i:63482503 original size:49 final size:47
Alignment explanation
Indices: 63482424--63483021 Score: 964
Period size: 47 Copynumber: 12.6 Consensus size: 47
63482414 TATTTGAATA
63482424 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
63482471 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * *
63482520 AATGTGAAAGTGTATATATGTGATAAGGGCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
63482567 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
63482616 AATGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT-
1 AATGTG-AAA-GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * *
63482664 AATGTGAAAGTGTACATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
63482711 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
63482760 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
63482807 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
63482854 AATGTGAAAGTGTATAAATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
63482901 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * *
63482948 AATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
63482995 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
63483022 TCCCGAAGGG
Statistics
Matches: 514, Mismatches: 28, Indels: 18
0.92 0.05 0.03
Matches are distributed among these distances:
46 33 0.06
47 307 0.60
48 6 0.01
49 163 0.32
50 3 0.01
51 2 0.00
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:63482709 original size:22 final size:22
Alignment explanation
Indices: 63482635--63482709 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
63482625 ATGTATATAT
* *
63482635 ATGTGATAAGGCCTAATGGCCG
1 ATGTGATAAGGCCGAATGGCCA
* * **
63482657 ATGTGATAATG-TGAAAGTGTACA
1 ATGTGATAAGGCCG-AA-TGGCCA
63482680 TATGTGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCCGAATGGCCA
63482703 ATGTGAT
1 ATGTGAT
63482710 GAATGTGAAA
Statistics
Matches: 39, Mismatches: 10, Indels: 8
0.68 0.18 0.14
Matches are distributed among these distances:
22 19 0.49
23 7 0.18
24 12 0.31
25 1 0.03
ACGTcount: A:0.32, C:0.12, G:0.29, T:0.27
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:63492874 original size:93 final size:93
Alignment explanation
Indices: 63492765--63492937 Score: 265
Period size: 93 Copynumber: 1.9 Consensus size: 93
63492755 CGTCCATAAG
* * * *
63492765 CGAACTCGAACTCAACTCAACGAGCTCGGGCGTTCGCATCCGTAAGTAAACTCGGACTCAACTCA
1 CGAACTCGAACTCAACTCAACGAGCTCGGACATTAGCATCCATAAGTAAACTCGGACTCAACTCA
*
63492830 ACGAGCTTGGATGCCTAGTAACATCTCA
66 ACGAGCTCGGATGCCTAGTAACATCTCA
* * * *
63492858 CGAACTCGGACTCAACTCAACGAGCTCGGACATTAGCATCCATAAGTGAACTTGGACTCGACTCA
1 CGAACTCGAACTCAACTCAACGAGCTCGGACATTAGCATCCATAAGTAAACTCGGACTCAACTCA
63492923 ACGAGCTCGGATGCC
66 ACGAGCTCGGATGCC
63492938 CAAATATCCT
Statistics
Matches: 71, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (93 bp):
CGAACTCGAACTCAACTCAACGAGCTCGGACATTAGCATCCATAAGTAAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTAACATCTCA
Found at i:63492933 original size:46 final size:46
Alignment explanation
Indices: 63492757--63492933 Score: 171
Period size: 46 Copynumber: 3.8 Consensus size: 46
63492747 ATGTAACCCG
* * * *
63492757 TCCATAAGCGAACTCGAACTCAACTCAACGAGCTCGGGCGTTCGCA
1 TCCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTAGCA
* ** * * *
63492803 TCCGTAAGTAAACTCGGACTCAACTCAACGAGCTTGGATGCCTAGTAACA
1 TCCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA---C-ATTAGCA
*
63492853 T-C-TCA-CGAACTCGGACTCAACTCAACGAGCTCGGACATTAGCA
1 TCCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTAGCA
* * *
63492896 TCCATAAGTGAACTTGGACTCGACTCAACGAGCTCGGA
1 TCCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA
63492934 TGCCCAAATA
Statistics
Matches: 104, Mismatches: 20, Indels: 14
0.75 0.14 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 59 0.57
47 27 0.26
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.30, C:0.29, G:0.21, T:0.20
Consensus pattern (46 bp):
TCCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTAGCA
Found at i:63495996 original size:93 final size:93
Alignment explanation
Indices: 63495837--63496008 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
63495827 GCCCATAAGT
* * *
63495837 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAGGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
63495902 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
*
63495930 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
63495995 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
63496009 CAAATATCCC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:63496004 original size:46 final size:46
Alignment explanation
Indices: 63495829--63496004 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
63495819 TGTAACATGC
* * *
63495829 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
63495875 CCATAGGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* * *
63495925 --TTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
63495968 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
63496005 TGCCCAAATA
Statistics
Matches: 108, Mismatches: 13, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 63 0.58
47 29 0.27
48 1 0.01
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:63500189 original size:19 final size:19
Alignment explanation
Indices: 63500165--63500204 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
63500155 AGCTCCCATG
63500165 TAGCTCCACACCAGCTCAT
1 TAGCTCCACACCAGCTCAT
***
63500184 TAGCTCGGGACCAGCTCAT
1 TAGCTCCACACCAGCTCAT
63500203 TA
1 TA
63500205 TCAGCTCACG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.25, C:0.35, G:0.17, T:0.23
Consensus pattern (19 bp):
TAGCTCCACACCAGCTCAT
Found at i:63501468 original size:14 final size:14
Alignment explanation
Indices: 63501446--63501493 Score: 60
Period size: 14 Copynumber: 3.4 Consensus size: 14
63501436 ACCTAAACCG
* *
63501446 ACCAATTTGTTCAT
1 ACCATTTTGTTCCT
63501460 ACCATTTTGTTCCT
1 ACCATTTTGTTCCT
* *
63501474 ACCCTTTCGTTCCT
1 ACCATTTTGTTCCT
63501488 ACCATT
1 ACCATT
63501494 CCATTCGTAC
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 29 1.00
ACGTcount: A:0.19, C:0.31, G:0.06, T:0.44
Consensus pattern (14 bp):
ACCATTTTGTTCCT
Found at i:63510365 original size:13 final size:13
Alignment explanation
Indices: 63510347--63510375 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
63510337 TGGCTAACCT
63510347 ACATAATTAAATA
1 ACATAATTAAATA
63510360 ACATAATTAAATA
1 ACATAATTAAATA
63510373 ACA
1 ACA
63510376 CACAGCTATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.62, C:0.10, G:0.00, T:0.28
Consensus pattern (13 bp):
ACATAATTAAATA
Found at i:63510632 original size:10 final size:10
Alignment explanation
Indices: 63510600--63510647 Score: 53
Period size: 10 Copynumber: 4.7 Consensus size: 10
63510590 AAAAAGGAAT
*
63510600 AGCTGAAACG
1 AGCTCAAACG
63510610 AGCT-AAATTCG
1 AGCTCAAA--CG
63510621 AGCTCAAACG
1 AGCTCAAACG
*
63510631 AGCTAAAACG
1 AGCTCAAACG
63510641 AGCTCAA
1 AGCTCAA
63510648 GTGAGCTGAT
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
9 3 0.09
10 21 0.64
11 6 0.18
12 3 0.09
ACGTcount: A:0.42, C:0.23, G:0.21, T:0.15
Consensus pattern (10 bp):
AGCTCAAACG
Found at i:63510654 original size:20 final size:21
Alignment explanation
Indices: 63510600--63510647 Score: 71
Period size: 21 Copynumber: 2.3 Consensus size: 21
63510590 AAAAAGGAAT
* *
63510600 AGCTGAAACGAGCTAAATTCG
1 AGCTCAAACGAGCTAAATACG
63510621 AGCTCAAACGAGCTAAA-ACG
1 AGCTCAAACGAGCTAAATACG
63510641 AGCTCAA
1 AGCTCAA
63510648 GTGAGCTGAT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
20 9 0.36
21 16 0.64
ACGTcount: A:0.42, C:0.23, G:0.21, T:0.15
Consensus pattern (21 bp):
AGCTCAAACGAGCTAAATACG
Found at i:63659257 original size:14 final size:14
Alignment explanation
Indices: 63659235--63659282 Score: 53
Period size: 14 Copynumber: 3.4 Consensus size: 14
63659225 ACCTAAACCG
* *
63659235 ACCAATTTGTTCAT
1 ACCATTTTGTTCCT
63659249 ACCATTTTGTTCCT
1 ACCATTTTGTTCCT
*
63659263 ACGC-TTTCGTTCCT
1 AC-CATTTTGTTCCT
63659277 ACCATT
1 ACCATT
63659283 CCATTCGTAC
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
13 1 0.03
14 27 0.93
15 1 0.03
ACGTcount: A:0.19, C:0.29, G:0.08, T:0.44
Consensus pattern (14 bp):
ACCATTTTGTTCCT
Found at i:63662343 original size:20 final size:20
Alignment explanation
Indices: 63662320--63662373 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 20
63662310 AGTTTTTCCC
*
63662320 AGCTCGATTTAGCTCACATG
1 AGCTCAATTTAGCTCACATG
* ***
63662340 AGCTTAATTTAGCTCGTTTG
1 AGCTCAATTTAGCTCACATG
63662360 AGCTCAATTTAGCT
1 AGCTCAATTTAGCT
63662374 TACTTTAGCT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.24, C:0.20, G:0.19, T:0.37
Consensus pattern (20 bp):
AGCTCAATTTAGCTCACATG
Found at i:63662355 original size:30 final size:30
Alignment explanation
Indices: 63662320--63662393 Score: 98
Period size: 30 Copynumber: 2.5 Consensus size: 30
63662310 AGTTTTTCCC
63662320 AGCTCGATTT-AGCTCACA-TGAGCTTAATTT
1 AGCTCG-TTTGAGCTCA-ATTGAGCTTAATTT
* *
63662350 AGCTCGTTTGAGCTCAATTTAGCTTACTTT
1 AGCTCGTTTGAGCTCAATTGAGCTTAATTT
63662380 AGCTCGTTTGAGCT
1 AGCTCGTTTGAGCT
63662394 TGGCTTAAGT
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
29 4 0.10
30 36 0.90
ACGTcount: A:0.22, C:0.20, G:0.19, T:0.39
Consensus pattern (30 bp):
AGCTCGTTTGAGCTCAATTGAGCTTAATTT
Found at i:63662383 original size:20 final size:20
Alignment explanation
Indices: 63662320--63662384 Score: 53
Period size: 20 Copynumber: 3.2 Consensus size: 20
63662310 AGTTTTTCCC
* * * *
63662320 AGCTCGATTTAGCTCACATG
1 AGCTCAATTTAGCTTACTTT
*
63662340 AGCTTAATTTAGC-T-CGTTT
1 AGCTCAATTTAGCTTAC-TTT
63662359 GAGCTCAATTTAGCTTACTTT
1 -AGCTCAATTTAGCTTACTTT
63662380 AGCTC
1 AGCTC
63662385 GTTTGAGCTT
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
18 1 0.03
19 1 0.03
20 28 0.80
21 4 0.11
22 1 0.03
ACGTcount: A:0.23, C:0.22, G:0.17, T:0.38
Consensus pattern (20 bp):
AGCTCAATTTAGCTTACTTT
Found at i:63664000 original size:12 final size:12
Alignment explanation
Indices: 63663983--63664039 Score: 55
Period size: 11 Copynumber: 4.7 Consensus size: 12
63663973 ACAAAAAATC
63663983 AAAAAAATTCGA
1 AAAAAAATTCGA
*
63663995 AAAAAAATTGATTGA
1 AAAAAAA-T--TCGA
63664010 AAAAAAATTC-A
1 AAAAAAATTCGA
*
63664021 AAAAAAAGT-GA
1 AAAAAAATTCGA
63664032 AAAAAAAT
1 AAAAAAAT
63664040 CGAGCAAAAA
Statistics
Matches: 37, Mismatches: 4, Indels: 9
0.74 0.08 0.18
Matches are distributed among these distances:
11 17 0.46
12 8 0.22
13 1 0.03
14 1 0.03
15 10 0.27
ACGTcount: A:0.70, C:0.04, G:0.09, T:0.18
Consensus pattern (12 bp):
AAAAAAATTCGA
Found at i:63665109 original size:12 final size:12
Alignment explanation
Indices: 63665097--63665214 Score: 50
Period size: 12 Copynumber: 9.8 Consensus size: 12
63665087 GAAAGAGATT
*
63665097 GAAAAAGAAATT
1 GAAAAAGAAATA
63665109 G--AAAGAAA-A
1 GAAAAAGAAATA
*
63665118 CAAAAAGAAA-A
1 GAAAAAGAAATA
*
63665129 CGAAAAAGAAAAA
1 -GAAAAAGAAATA
**
63665142 GAAATTGCAAA-A
1 GAAAAAG-AAATA
*
63665154 GAAAAAGAAATC
1 GAAAAAGAAATA
** *
63665166 GAAAAAGTGAGA
1 GAAAAAGAAATA
63665178 GAAAAAGAAA-A
1 GAAAAAGAAATA
*
63665189 TGAAGAAAAGAAAATT
1 -G-A-AAAAG-AAATA
63665205 GAAAAAGAAA
1 GAAAAAGAAA
63665215 AAGCGAAAAA
Statistics
Matches: 80, Mismatches: 15, Indels: 22
0.68 0.13 0.19
Matches are distributed among these distances:
10 7 0.09
11 12 0.15
12 41 0.51
13 10 0.12
14 6 0.08
15 4 0.05
ACGTcount: A:0.70, C:0.03, G:0.19, T:0.08
Consensus pattern (12 bp):
GAAAAAGAAATA
Found at i:63665140 original size:18 final size:18
Alignment explanation
Indices: 63665114--63665217 Score: 82
Period size: 18 Copynumber: 5.6 Consensus size: 18
63665104 AAATTGAAAG
*
63665114 AAAACAAAAAGAAAACGA
1 AAAAGAAAAAGAAAACGA
** *
63665132 AAAAGAAAAAGAAATTGC
1 AAAAGAAAAAGAAAACGA
*
63665150 AAAAGAAAAAGAAATCGA
1 AAAAGAAAAAGAAAACGA
** * *
63665168 AAAAGTGAGAGAAAAAGA
1 AAAAGAAAAAGAAAACGA
* *
63665186 AAATGAAGAAAAGAAAATTGA
1 AAAAG-A-AAAAGAAAA-CGA
63665207 AAAAGAAAAAG
1 AAAAGAAAAAG
63665218 CGAAAAAAGA
Statistics
Matches: 66, Mismatches: 17, Indels: 5
0.75 0.19 0.06
Matches are distributed among these distances:
18 47 0.71
19 5 0.08
20 8 0.12
21 6 0.09
ACGTcount: A:0.71, C:0.04, G:0.18, T:0.07
Consensus pattern (18 bp):
AAAAGAAAAAGAAAACGA
Found at i:63665142 original size:6 final size:6
Alignment explanation
Indices: 63665110--63665217 Score: 74
Period size: 6 Copynumber: 17.7 Consensus size: 6
63665100 AAAGAAATTG
* * ** *
63665110 AAAG-A AAACAA AAAGAA AACGAA AAAGAA AAAGAA ATTGCA AAAGAA
1 AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA
** ** * * *
63665157 AAAGAA ATCGAA AAAGTG AGAGAA AAAGAA AATGAAGA AAAGAA AATTGAA
1 AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA AAAG-A-A AAAGAA AA-AGAA
63665208 AAAGAA AAAG
1 AAAGAA AAAG
63665218 CGAAAAAAGA
Statistics
Matches: 75, Mismatches: 24, Indels: 7
0.71 0.23 0.07
Matches are distributed among these distances:
5 3 0.04
6 61 0.81
7 7 0.09
8 4 0.05
ACGTcount: A:0.71, C:0.04, G:0.19, T:0.06
Consensus pattern (6 bp):
AAAGAA
Found at i:63665199 original size:14 final size:13
Alignment explanation
Indices: 63665178--63665215 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 13
63665168 AAAAGTGAGA
63665178 GAAAAAGAAAA-T
1 GAAAAAGAAAATT
63665190 GAAGAAAAGAAAATT
1 G-A-AAAAGAAAATT
63665205 GAAAAAGAAAA
1 GAAAAAGAAAA
63665216 AGCGAAAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
12 1 0.04
13 10 0.43
14 10 0.43
15 2 0.09
ACGTcount: A:0.74, C:0.00, G:0.18, T:0.08
Consensus pattern (13 bp):
GAAAAAGAAAATT
Found at i:63665229 original size:21 final size:21
Alignment explanation
Indices: 63665179--63665229 Score: 50
Period size: 21 Copynumber: 2.4 Consensus size: 21
63665169 AAAGTGAGAG
*
63665179 AAAAAGAAAATGAAGAAAAGA
1 AAAAAGAAAAAGAAGAAAAGA
** *
63665200 AAATTGAAAAAGAA-AAAGCGA
1 AAAAAGAAAAAGAAGAAA-AGA
63665221 AAAAAGAAA
1 AAAAAGAAA
63665230 TTGAAAGAGA
Statistics
Matches: 23, Mismatches: 6, Indels: 2
0.74 0.19 0.06
Matches are distributed among these distances:
20 3 0.13
21 20 0.87
ACGTcount: A:0.75, C:0.02, G:0.18, T:0.06
Consensus pattern (21 bp):
AAAAAGAAAAAGAAGAAAAGA
Found at i:63665269 original size:33 final size:33
Alignment explanation
Indices: 63665232--63665294 Score: 85
Period size: 33 Copynumber: 1.9 Consensus size: 33
63665222 AAAAGAAATT
63665232 GAAAGAGAG-CT-TGAAAAGAAATCAAGTGAAAAA
1 GAAAGAGAGTCTGT-AAAAGAAA-CAAGTGAAAAA
*
63665265 GAAAGAGAGTCTGTAAAAGAAACGAGTGAA
1 GAAAGAGAGTCTGTAAAAGAAACAAGTGAA
63665295 GTGAGTAATC
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
33 16 0.59
34 10 0.37
35 1 0.04
ACGTcount: A:0.54, C:0.06, G:0.27, T:0.13
Consensus pattern (33 bp):
GAAAGAGAGTCTGTAAAAGAAACAAGTGAAAAA
Found at i:63667094 original size:20 final size:20
Alignment explanation
Indices: 63667071--63667124 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 20
63667061 AGTTTTTCCC
*
63667071 AGCTCGATTTAGCTCACATG
1 AGCTCAATTTAGCTCACATG
* ***
63667091 AGCTTAATTTAGCTCGTTTG
1 AGCTCAATTTAGCTCACATG
63667111 AGCTCAATTTAGCT
1 AGCTCAATTTAGCT
63667125 TACTTTAGCT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.24, C:0.20, G:0.19, T:0.37
Consensus pattern (20 bp):
AGCTCAATTTAGCTCACATG
Found at i:63667106 original size:30 final size:30
Alignment explanation
Indices: 63667071--63667144 Score: 98
Period size: 30 Copynumber: 2.5 Consensus size: 30
63667061 AGTTTTTCCC
63667071 AGCTCGATTT-AGCTCACA-TGAGCTTAATTT
1 AGCTCG-TTTGAGCTCA-ATTGAGCTTAATTT
* *
63667101 AGCTCGTTTGAGCTCAATTTAGCTTACTTT
1 AGCTCGTTTGAGCTCAATTGAGCTTAATTT
63667131 AGCTCGTTTGAGCT
1 AGCTCGTTTGAGCT
63667145 TGGCTTAAGT
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
29 4 0.10
30 36 0.90
ACGTcount: A:0.22, C:0.20, G:0.19, T:0.39
Consensus pattern (30 bp):
AGCTCGTTTGAGCTCAATTGAGCTTAATTT
Found at i:63667134 original size:20 final size:20
Alignment explanation
Indices: 63667071--63667135 Score: 53
Period size: 20 Copynumber: 3.2 Consensus size: 20
63667061 AGTTTTTCCC
* * * *
63667071 AGCTCGATTTAGCTCACATG
1 AGCTCAATTTAGCTTACTTT
*
63667091 AGCTTAATTTAGC-T-CGTTT
1 AGCTCAATTTAGCTTAC-TTT
63667110 GAGCTCAATTTAGCTTACTTT
1 -AGCTCAATTTAGCTTACTTT
63667131 AGCTC
1 AGCTC
63667136 GTTTGAGCTT
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
18 1 0.03
19 1 0.03
20 28 0.80
21 4 0.11
22 1 0.03
ACGTcount: A:0.23, C:0.22, G:0.17, T:0.38
Consensus pattern (20 bp):
AGCTCAATTTAGCTTACTTT
Found at i:63668777 original size:11 final size:11
Alignment explanation
Indices: 63668727--63668793 Score: 55
Period size: 11 Copynumber: 5.7 Consensus size: 11
63668717 TTGGAGTAAC
63668727 AAAAAAA-TCA
1 AAAAAAATTCA
63668737 AAAAAAATTCGAA
1 AAAAAAATTC--A
*
63668750 AAAAAATTGATTGA
1 AAAAAA---ATTCA
63668764 AAAAAAATTCA
1 AAAAAAATTCA
* *
63668775 AAAAAAAGTGA
1 AAAAAAATTCA
63668786 AAAAAAAT
1 AAAAAAAT
63668794 CGAGCAAAAA
Statistics
Matches: 46, Mismatches: 5, Indels: 11
0.74 0.08 0.18
Matches are distributed among these distances:
10 7 0.15
11 22 0.48
13 7 0.15
14 7 0.15
16 3 0.07
ACGTcount: A:0.72, C:0.04, G:0.07, T:0.16
Consensus pattern (11 bp):
AAAAAAATTCA
Found at i:63668804 original size:37 final size:37
Alignment explanation
Indices: 63668727--63668806 Score: 101
Period size: 38 Copynumber: 2.2 Consensus size: 37
63668717 TTGGAGTAAC
* *
63668727 AAAAAAATCAAAAAAAATTCGAAAAAAAATTGATTG-AA
1 AAAAAAATCAAAAAAAAGTCGAAAAAAAATCGA--GCAA
*
63668765 AAAAAATTCAAAAAAAAGT-GAAAAAAAATCGAGCAA
1 AAAAAAATCAAAAAAAAGTCGAAAAAAAATCGAGCAA
63668801 AAAAAA
1 AAAAAA
63668807 GAAAAGAAAA
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
35 1 0.03
36 8 0.21
37 12 0.32
38 17 0.45
ACGTcount: A:0.71, C:0.06, G:0.09, T:0.14
Consensus pattern (37 bp):
AAAAAAATCAAAAAAAAGTCGAAAAAAAATCGAGCAA
Found at i:63669833 original size:12 final size:12
Alignment explanation
Indices: 63669821--63669938 Score: 50
Period size: 12 Copynumber: 9.8 Consensus size: 12
63669811 GAAAGAGATT
*
63669821 GAAAAAGAAATT
1 GAAAAAGAAATA
63669833 G--AAAGAAA-A
1 GAAAAAGAAATA
*
63669842 CAAAAAGAAA-A
1 GAAAAAGAAATA
*
63669853 CGAAAAAGAAAAA
1 -GAAAAAGAAATA
**
63669866 GAAATTGCAAA-A
1 GAAAAAG-AAATA
*
63669878 GAAAAAGAAATC
1 GAAAAAGAAATA
** *
63669890 GAAAAAGTGAGA
1 GAAAAAGAAATA
63669902 GAAAAAGAAA-A
1 GAAAAAGAAATA
*
63669913 TGAAGAAAAGAAAATT
1 -G-A-AAAAG-AAATA
63669929 GAAAAAGAAA
1 GAAAAAGAAA
63669939 AAGCGAAAAA
Statistics
Matches: 80, Mismatches: 15, Indels: 22
0.68 0.13 0.19
Matches are distributed among these distances:
10 7 0.09
11 12 0.15
12 41 0.51
13 10 0.12
14 6 0.08
15 4 0.05
ACGTcount: A:0.70, C:0.03, G:0.19, T:0.08
Consensus pattern (12 bp):
GAAAAAGAAATA
Found at i:63669864 original size:18 final size:18
Alignment explanation
Indices: 63669838--63669941 Score: 82
Period size: 18 Copynumber: 5.6 Consensus size: 18
63669828 AAATTGAAAG
*
63669838 AAAACAAAAAGAAAACGA
1 AAAAGAAAAAGAAAACGA
** *
63669856 AAAAGAAAAAGAAATTGC
1 AAAAGAAAAAGAAAACGA
*
63669874 AAAAGAAAAAGAAATCGA
1 AAAAGAAAAAGAAAACGA
** * *
63669892 AAAAGTGAGAGAAAAAGA
1 AAAAGAAAAAGAAAACGA
* *
63669910 AAATGAAGAAAAGAAAATTGA
1 AAAAG-A-AAAAGAAAA-CGA
63669931 AAAAGAAAAAG
1 AAAAGAAAAAG
63669942 CGAAAAAAGA
Statistics
Matches: 66, Mismatches: 17, Indels: 5
0.75 0.19 0.06
Matches are distributed among these distances:
18 47 0.71
19 5 0.08
20 8 0.12
21 6 0.09
ACGTcount: A:0.71, C:0.04, G:0.18, T:0.07
Consensus pattern (18 bp):
AAAAGAAAAAGAAAACGA
Found at i:63669866 original size:6 final size:6
Alignment explanation
Indices: 63669834--63669941 Score: 74
Period size: 6 Copynumber: 17.7 Consensus size: 6
63669824 AAAGAAATTG
* * ** *
63669834 AAAG-A AAACAA AAAGAA AACGAA AAAGAA AAAGAA ATTGCA AAAGAA
1 AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA
** ** * * *
63669881 AAAGAA ATCGAA AAAGTG AGAGAA AAAGAA AATGAAGA AAAGAA AATTGAA
1 AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA AAAG-A-A AAAGAA AA-AGAA
63669932 AAAGAA AAAG
1 AAAGAA AAAG
63669942 CGAAAAAAGA
Statistics
Matches: 75, Mismatches: 24, Indels: 7
0.71 0.23 0.07
Matches are distributed among these distances:
5 3 0.04
6 61 0.81
7 7 0.09
8 4 0.05
ACGTcount: A:0.71, C:0.04, G:0.19, T:0.06
Consensus pattern (6 bp):
AAAGAA
Found at i:63669923 original size:14 final size:13
Alignment explanation
Indices: 63669902--63669939 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 13
63669892 AAAAGTGAGA
63669902 GAAAAAGAAAA-T
1 GAAAAAGAAAATT
63669914 GAAGAAAAGAAAATT
1 G-A-AAAAGAAAATT
63669929 GAAAAAGAAAA
1 GAAAAAGAAAA
63669940 AGCGAAAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
12 1 0.04
13 10 0.43
14 10 0.43
15 2 0.09
ACGTcount: A:0.74, C:0.00, G:0.18, T:0.08
Consensus pattern (13 bp):
GAAAAAGAAAATT
Found at i:63669953 original size:21 final size:21
Alignment explanation
Indices: 63669903--63669953 Score: 50
Period size: 21 Copynumber: 2.4 Consensus size: 21
63669893 AAAGTGAGAG
*
63669903 AAAAAGAAAATGAAGAAAAGA
1 AAAAAGAAAAAGAAGAAAAGA
** *
63669924 AAATTGAAAAAGAA-AAAGCGA
1 AAAAAGAAAAAGAAGAAA-AGA
63669945 AAAAAGAAA
1 AAAAAGAAA
63669954 TTGAAAGAGA
Statistics
Matches: 23, Mismatches: 6, Indels: 2
0.74 0.19 0.06
Matches are distributed among these distances:
20 3 0.13
21 20 0.87
ACGTcount: A:0.75, C:0.02, G:0.18, T:0.06
Consensus pattern (21 bp):
AAAAAGAAAAAGAAGAAAAGA
Found at i:63669993 original size:33 final size:33
Alignment explanation
Indices: 63669956--63670018 Score: 85
Period size: 33 Copynumber: 1.9 Consensus size: 33
63669946 AAAAGAAATT
63669956 GAAAGAGAG-CT-TGAAAAGAAATCAAGTGAAAAA
1 GAAAGAGAGTCTGT-AAAAGAAA-CAAGTGAAAAA
*
63669989 GAAAGAGAGTCTGTAAAAGAAACGAGTGAA
1 GAAAGAGAGTCTGTAAAAGAAACAAGTGAA
63670019 GTGAGTAATC
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
33 16 0.59
34 10 0.37
35 1 0.04
ACGTcount: A:0.54, C:0.06, G:0.27, T:0.13
Consensus pattern (33 bp):
GAAAGAGAGTCTGTAAAAGAAACAAGTGAAAAA
Found at i:63671816 original size:20 final size:20
Alignment explanation
Indices: 63671793--63671846 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 20
63671783 AGTTTTTCCC
*
63671793 AGCTCGATTTAGCTCACATG
1 AGCTCAATTTAGCTCACATG
* ***
63671813 AGCTTAATTTAGCTCGTTTG
1 AGCTCAATTTAGCTCACATG
63671833 AGCTCAATTTAGCT
1 AGCTCAATTTAGCT
63671847 TACTTTAGCT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.24, C:0.20, G:0.19, T:0.37
Consensus pattern (20 bp):
AGCTCAATTTAGCTCACATG
Found at i:63671828 original size:30 final size:30
Alignment explanation
Indices: 63671793--63671866 Score: 98
Period size: 30 Copynumber: 2.5 Consensus size: 30
63671783 AGTTTTTCCC
63671793 AGCTCGATTT-AGCTCACA-TGAGCTTAATTT
1 AGCTCG-TTTGAGCTCA-ATTGAGCTTAATTT
* *
63671823 AGCTCGTTTGAGCTCAATTTAGCTTACTTT
1 AGCTCGTTTGAGCTCAATTGAGCTTAATTT
63671853 AGCTCGTTTGAGCT
1 AGCTCGTTTGAGCT
63671867 TGGCTTAAGT
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
29 4 0.10
30 36 0.90
ACGTcount: A:0.22, C:0.20, G:0.19, T:0.39
Consensus pattern (30 bp):
AGCTCGTTTGAGCTCAATTGAGCTTAATTT
Found at i:63671856 original size:20 final size:20
Alignment explanation
Indices: 63671793--63671857 Score: 53
Period size: 20 Copynumber: 3.2 Consensus size: 20
63671783 AGTTTTTCCC
* * * *
63671793 AGCTCGATTTAGCTCACATG
1 AGCTCAATTTAGCTTACTTT
*
63671813 AGCTTAATTTAGC-T-CGTTT
1 AGCTCAATTTAGCTTAC-TTT
63671832 GAGCTCAATTTAGCTTACTTT
1 -AGCTCAATTTAGCTTACTTT
63671853 AGCTC
1 AGCTC
63671858 GTTTGAGCTT
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
18 1 0.03
19 1 0.03
20 28 0.80
21 4 0.11
22 1 0.03
ACGTcount: A:0.23, C:0.22, G:0.17, T:0.38
Consensus pattern (20 bp):
AGCTCAATTTAGCTTACTTT
Found at i:63679267 original size:13 final size:13
Alignment explanation
Indices: 63679249--63679277 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
63679239 CGGCTAACCT
63679249 ACATAATTAAATA
1 ACATAATTAAATA
63679262 ACATAATTAAATA
1 ACATAATTAAATA
63679275 ACA
1 ACA
63679278 CACAACTATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.62, C:0.10, G:0.00, T:0.28
Consensus pattern (13 bp):
ACATAATTAAATA
Found at i:63679557 original size:20 final size:21
Alignment explanation
Indices: 63679503--63679550 Score: 71
Period size: 21 Copynumber: 2.3 Consensus size: 21
63679493 AAAAGGAATA
* *
63679503 AGCTGAAACGAGCTAAATTCG
1 AGCTCAAACGAGCTAAAATCG
63679524 AGCTCAAACGAGCTAAAAT-G
1 AGCTCAAACGAGCTAAAATCG
63679544 AGCTCAA
1 AGCTCAA
63679551 GTGAGCTGAT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
20 8 0.32
21 17 0.68
ACGTcount: A:0.42, C:0.21, G:0.21, T:0.17
Consensus pattern (21 bp):
AGCTCAAACGAGCTAAAATCG
Found at i:63687007 original size:28 final size:28
Alignment explanation
Indices: 63686976--63687049 Score: 85
Period size: 29 Copynumber: 2.6 Consensus size: 28
63686966 GCCCACTAAG
*
63686976 CCCAATCATATTCATATGGCCCATTAGC
1 CCCAATCACATTCATATGGCCCATTAGC
** * *
63687004 CCCAAATCACATTTTTATGGCCCGTTAGG
1 CCC-AATCACATTCATATGGCCCATTAGC
*
63687033 CCCAGTCACATTCATAT
1 CCCAATCACATTCATAT
63687050 TCATGCTCAC
Statistics
Matches: 37, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
28 14 0.38
29 23 0.62
ACGTcount: A:0.27, C:0.31, G:0.12, T:0.30
Consensus pattern (28 bp):
CCCAATCACATTCATATGGCCCATTAGC
Found at i:63687295 original size:16 final size:16
Alignment explanation
Indices: 63687260--63687302 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 16
63687250 GTAGCCAAAC
*
63687260 TTTCGGCTTTTTGACA
1 TTTCGGCATTTTGACA
* *
63687276 TTTCGGCATTTTGGCT
1 TTTCGGCATTTTGACA
*
63687292 TTTCAGCATTT
1 TTTCGGCATTT
63687303 CAGCTTTTGC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.12, C:0.19, G:0.19, T:0.51
Consensus pattern (16 bp):
TTTCGGCATTTTGACA
Found at i:63688444 original size:16 final size:16
Alignment explanation
Indices: 63688419--63688450 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
63688409 AAAATTCTGA
63688419 ATTTCAGGATTTTTGG
1 ATTTCAGGATTTTTGG
*
63688435 ATTTCGGGATTTTTGG
1 ATTTCAGGATTTTTGG
63688451 GGCGTTACAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.16, C:0.06, G:0.28, T:0.50
Consensus pattern (16 bp):
ATTTCAGGATTTTTGG
Found at i:63693988 original size:44 final size:43
Alignment explanation
Indices: 63693940--63694033 Score: 102
Period size: 42 Copynumber: 2.2 Consensus size: 43
63693930 TGGGACGCTG
* * * *
63693940 GCATCGACT-TCTATTTTACGTCTAAGACCATGTCTGGGACATCA
1 GCATCGA-TATCTAATTT-CGTATAAAACCATGTCTGGGACAGCA
* *
63693984 GCATCG-TATCTAATTTCGTATAAAACCCTGTCTGGGACAGCG
1 GCATCGATATCTAATTTCGTATAAAACCATGTCTGGGACAGCA
63694026 GCATCGAT
1 GCATCGAT
63694034 GTTTGATTAC
Statistics
Matches: 42, Mismatches: 6, Indels: 5
0.79 0.11 0.09
Matches are distributed among these distances:
42 28 0.67
43 8 0.19
44 6 0.14
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (43 bp):
GCATCGATATCTAATTTCGTATAAAACCATGTCTGGGACAGCA
Found at i:63694494 original size:20 final size:20
Alignment explanation
Indices: 63694469--63694508 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
63694459 GTACTTTGAA
63694469 AATGTATATATTAAAGTATG
1 AATGTATATATTAAAGTATG
63694489 AATGTATATATTAAAGTATG
1 AATGTATATATTAAAGTATG
63694509 GCATGTATAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.45, C:0.00, G:0.15, T:0.40
Consensus pattern (20 bp):
AATGTATATATTAAAGTATG
Found at i:63704535 original size:38 final size:38
Alignment explanation
Indices: 63704484--63704561 Score: 156
Period size: 38 Copynumber: 2.1 Consensus size: 38
63704474 TACTTCTGTG
63704484 ATTGCTTTGATAGATCCTGGATCAACACATTCGTATGT
1 ATTGCTTTGATAGATCCTGGATCAACACATTCGTATGT
63704522 ATTGCTTTGATAGATCCTGGATCAACACATTCGTATGT
1 ATTGCTTTGATAGATCCTGGATCAACACATTCGTATGT
63704560 AT
1 AT
63704562 GCATGAACAT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 40 1.00
ACGTcount: A:0.27, C:0.18, G:0.18, T:0.37
Consensus pattern (38 bp):
ATTGCTTTGATAGATCCTGGATCAACACATTCGTATGT
Found at i:63707902 original size:20 final size:20
Alignment explanation
Indices: 63707873--63707926 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 20
63707863 AGTTTTTCCC
*
63707873 AGCTCGATTTAGCTCACATG
1 AGCTCAATTTAGCTCACATG
* ***
63707893 AGCTTAATTTAGCTCGTTTG
1 AGCTCAATTTAGCTCACATG
63707913 AGCTCAATTTAGCT
1 AGCTCAATTTAGCT
63707927 TACTTAGCTC
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.24, C:0.20, G:0.19, T:0.37
Consensus pattern (20 bp):
AGCTCAATTTAGCTCACATG
Found at i:63710299 original size:42 final size:42
Alignment explanation
Indices: 63710248--63710362 Score: 119
Period size: 43 Copynumber: 2.7 Consensus size: 42
63710238 TTTGTGATTT
*
63710248 CGTGT-AGACCATGTCTGGGACATTGGCATCAACT-TCT-GTTA
1 CGTGTAAGACCATGTCTGGGACATTGGCATC--CTATCTAATTA
* * * *
63710289 CGTGTAAGACCATGTCTGGGAACATCGACATCGTATCTAATTT
1 CGTGTAAGACCATGTCTGGG-ACATTGGCATCCTATCTAATTA
* *
63710332 CGTGTAAGACCCTGTCTGGGACAGTGGCATC
1 CGTGTAAGACCATGTCTGGGACATTGGCATC
63710363 GATGTTTGAT
Statistics
Matches: 61, Mismatches: 9, Indels: 7
0.79 0.12 0.09
Matches are distributed among these distances:
41 6 0.10
42 25 0.41
43 30 0.49
ACGTcount: A:0.23, C:0.23, G:0.25, T:0.29
Consensus pattern (42 bp):
CGTGTAAGACCATGTCTGGGACATTGGCATCCTATCTAATTA
Found at i:63713487 original size:28 final size:27
Alignment explanation
Indices: 63713403--63713553 Score: 182
Period size: 28 Copynumber: 5.6 Consensus size: 27
63713393 TAAATTGTGC
*
63713403 AGCATCTAAGTGTCGCGAATTGACTATGT
1 AGCA-CTAAGTGT-GCGAGTTGACTATGT
63713432 --CACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
63713457 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
*
63713485 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
* * * *
63713513 AGCA-TAGGTGTGCGAGCTGATTATAT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
63713539 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
63713554 GACTTAATAT
Statistics
Matches: 111, Mismatches: 7, Indels: 10
0.87 0.05 0.08
Matches are distributed among these distances:
25 14 0.13
26 20 0.18
27 36 0.32
28 41 0.37
ACGTcount: A:0.25, C:0.15, G:0.29, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGACTATGT
Found at i:63715266 original size:40 final size:39
Alignment explanation
Indices: 63715154--63715373 Score: 246
Period size: 39 Copynumber: 5.6 Consensus size: 39
63715144 TCCTCGTTCA
* * * * *
63715154 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
*
63715193 AATGCCTTCGGGAC-TAACCCGGATTTAACAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
63715231 GAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
* *
63715271 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
* ** * * * *
63715310 AAAGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCAC
* *
63715350 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
63715374 CAGCATTCAA
Statistics
Matches: 159, Mismatches: 17, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
38 22 0.14
39 87 0.55
40 47 0.30
41 3 0.02
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.25
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
Found at i:63723112 original size:40 final size:40
Alignment explanation
Indices: 63723016--63723183 Score: 221
Period size: 40 Copynumber: 4.2 Consensus size: 40
63723006 CTCGTTCAAG
* * * *
63723016 TGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-AA
1 TGCCTTCGGGACATAACCCGGATTTAATAACTCGCACGAA
*
63723055 TGCCTTCGGGACATAACCCGGATTTAACAACTCGCACGAA
1 TGCCTTCGGGACATAACCCGGATTTAATAACTCGCACGAA
*
63723095 TGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAA
1 TGCCTTCGGGACATAACCCGGATTTAATAACTCGCACGAA
* * * * *
63723135 TGCCTTCGGGACTTAACCCAGATTTAGTATCTCGCACAAA
1 TGCCTTCGGGACATAACCCGGATTTAATAACTCGCACGAA
*
63723175 GGCCTTCGG
1 TGCCTTCGG
63723184 ATCTTAGTCC
Statistics
Matches: 116, Mismatches: 12, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 32 0.28
40 84 0.72
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
TGCCTTCGGGACATAACCCGGATTTAATAACTCGCACGAA
Found at i:63723196 original size:80 final size:79
Alignment explanation
Indices: 63723017--63723229 Score: 221
Period size: 80 Copynumber: 2.7 Consensus size: 79
63723007 TCGTTCAAGT
* * * * * * *
63723017 GCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGATTTAA
1 GCCTTCGGGACTTAACCCGGATTTAATAACTCGCACAATGCCTTCGGGACTTAACCCAGATTTAA
* *
63723082 CAACTCGCACGAAT
66 CAACTCGCACAAAG
63723096 GCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCAGATTTA
1 GCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC-AATGCCTTCGGGACTTAACCCAGATTTA
** *
63723161 GTATCTCGCACAAAG
65 ACAACTCGCACAAAG
** * * * * *
63723176 GCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTA
1 GCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACAATGCCTTCGGGACTTA
63723230 GCCCGGACAG
Statistics
Matches: 112, Mismatches: 19, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
79 34 0.30
80 73 0.65
81 5 0.04
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (79 bp):
GCCTTCGGGACTTAACCCGGATTTAATAACTCGCACAATGCCTTCGGGACTTAACCCAGATTTAA
CAACTCGCACAAAG
Found at i:63723245 original size:41 final size:41
Alignment explanation
Indices: 63723168--63723245 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
63723158 TTAGTATCTC
* * *
63723168 GCACAAAGGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
63723209 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAAGGCCTTC-GGATCTTAGCCCGGACA-CATTCA
63723246 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (41 bp):
GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:63724618 original size:20 final size:20
Alignment explanation
Indices: 63724595--63724648 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 20
63724585 AGTTTTTCCC
*
63724595 AGCTCGATTTAGCTCACATG
1 AGCTCAATTTAGCTCACATG
* ***
63724615 AGCTTAATTTAGCTCGTTTG
1 AGCTCAATTTAGCTCACATG
63724635 AGCTCAATTTAGCT
1 AGCTCAATTTAGCT
63724649 TACTTTAGCT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.24, C:0.20, G:0.19, T:0.37
Consensus pattern (20 bp):
AGCTCAATTTAGCTCACATG
Found at i:63724630 original size:30 final size:30
Alignment explanation
Indices: 63724595--63724668 Score: 98
Period size: 30 Copynumber: 2.5 Consensus size: 30
63724585 AGTTTTTCCC
63724595 AGCTCGATTT-AGCTCACA-TGAGCTTAATTT
1 AGCTCG-TTTGAGCTCA-ATTGAGCTTAATTT
* *
63724625 AGCTCGTTTGAGCTCAATTTAGCTTACTTT
1 AGCTCGTTTGAGCTCAATTGAGCTTAATTT
63724655 AGCTCGTTTGAGCT
1 AGCTCGTTTGAGCT
63724669 TGGCTTAAGT
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
29 4 0.10
30 36 0.90
ACGTcount: A:0.22, C:0.20, G:0.19, T:0.39
Consensus pattern (30 bp):
AGCTCGTTTGAGCTCAATTGAGCTTAATTT
Found at i:63724658 original size:20 final size:20
Alignment explanation
Indices: 63724595--63724659 Score: 53
Period size: 20 Copynumber: 3.2 Consensus size: 20
63724585 AGTTTTTCCC
* * * *
63724595 AGCTCGATTTAGCTCACATG
1 AGCTCAATTTAGCTTACTTT
*
63724615 AGCTTAATTTAGC-T-CGTTT
1 AGCTCAATTTAGCTTAC-TTT
63724634 GAGCTCAATTTAGCTTACTTT
1 -AGCTCAATTTAGCTTACTTT
63724655 AGCTC
1 AGCTC
63724660 GTTTGAGCTT
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
18 1 0.03
19 1 0.03
20 28 0.80
21 4 0.11
22 1 0.03
ACGTcount: A:0.23, C:0.22, G:0.17, T:0.38
Consensus pattern (20 bp):
AGCTCAATTTAGCTTACTTT
Found at i:63734673 original size:27 final size:27
Alignment explanation
Indices: 63734642--63734819 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
63734632 TAAATTGTAC
63734642 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
63734669 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
63734695 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
63734723 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
63734751 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
63734778 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
63734805 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
63734820 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:63734756 original size:82 final size:81
Alignment explanation
Indices: 63734643--63734798 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
63734633 AAATTGTACA
* *
63734643 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
63734707 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
63734724 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
63734789 TGCGAGTTGA
65 TGCGAATTGA
63734799 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:63734810 original size:82 final size:81
Alignment explanation
Indices: 63734639--63734819 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
63734629 GATTAAATTG
* *
63734639 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
63734704 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
63734720 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
63734784 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
63734802 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
63734820 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:63737459 original size:56 final size:54
Alignment explanation
Indices: 63737393--63737570 Score: 187
Period size: 56 Copynumber: 3.2 Consensus size: 54
63737383 GAGATTGGCG
* *
63737393 CTAAGAGTGCGGGTTTAAATTGTGCAGCACTAAGTGTGCGAATTGACTATGTAGCA
1 CTAAGTGTGCGAGTTT-AATTGTG-AGCACTAAGTGTGCGAATTGACTATGTAGCA
* *
63737449 CTAAGTGTGCGAGTTTGACTATGT-AGCACTAAGTGTGCGAGTTTGACTATGTAGCA
1 CTAAGTGTGCGAGTTT-AAT-TGTGAGCACTAAGTGTGCGA-ATTGACTATGTAGCA
* * * ** * *
63737505 CTAAGTGTGCGAGTTTGATTATGTAGCACTAGGTGTGCGAGCTGATTATATAGCA
1 CTAAGTGTGCGAGTTTAATTGTG-AGCACTAAGTGTGCGAATTGACTATGTAGCA
*
63737560 CTGAGTGTGCG
1 CTAAGTGTGCG
63737571 GACTTAATAT
Statistics
Matches: 104, Mismatches: 14, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
54 2 0.02
55 38 0.37
56 61 0.59
57 3 0.03
ACGTcount: A:0.25, C:0.14, G:0.30, T:0.31
Consensus pattern (54 bp):
CTAAGTGTGCGAGTTTAATTGTGAGCACTAAGTGTGCGAATTGACTATGTAGCA
Found at i:63737475 original size:28 final size:28
Alignment explanation
Indices: 63737418--63737570 Score: 229
Period size: 28 Copynumber: 5.5 Consensus size: 28
63737408 TAAATTGTGC
*
63737418 AGCACTAAGTGTGCGA-ATTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
63737445 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
63737473 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
*
63737501 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
* * * *
63737529 AGCACTAGGTGTGCGAG-CTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
*
63737556 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
63737571 GACTTAATAT
Statistics
Matches: 118, Mismatches: 7, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
27 37 0.31
28 81 0.69
ACGTcount: A:0.25, C:0.14, G:0.29, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGACTATGT
Found at i:63737567 original size:83 final size:83
Alignment explanation
Indices: 63737418--63737570 Score: 227
Period size: 83 Copynumber: 1.8 Consensus size: 83
63737408 TAAATTGTGC
* *
63737418 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGT
1 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTCTGACTATATAGCACTAAGT
63737483 GTGCGAGTTTGACTATGT
66 GTGCGAGTTTGACTATGT
* * * * *
63737501 AGCACTAAGTGTGCGAGTTTGATTATGTAGCACTAGGTGTGCGAG-CTGATTATATAGCACTGAG
1 AGCACTAAGTGTGCGA-ATTGACTATGTAGCACTAAGTGTGCGAGTCTGACTATATAGCACTAAG
63737565 TGTGCG
65 TGTGCG
63737571 GACTTAATAT
Statistics
Matches: 62, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
83 37 0.60
84 25 0.40
ACGTcount: A:0.25, C:0.14, G:0.29, T:0.31
Consensus pattern (83 bp):
AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTCTGACTATATAGCACTAAGT
GTGCGAGTTTGACTATGT
Found at i:63740049 original size:6 final size:6
Alignment explanation
Indices: 63740038--63740063 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
63740028 AGTTGTAAAG
63740038 TTTTAT TTTTAT TTTTAT TTTTAT TT
1 TTTTAT TTTTAT TTTTAT TTTTAT TT
63740064 ATTTATTTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (6 bp):
TTTTAT
Found at i:63740066 original size:4 final size:4
Alignment explanation
Indices: 63740057--63740087 Score: 53
Period size: 4 Copynumber: 7.8 Consensus size: 4
63740047 TATTTTTATT
*
63740057 TTTA TTTA TTTA TTTA TTTA TTTA CTTA TTT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTT
63740088 TAAATTTTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.23, C:0.03, G:0.00, T:0.74
Consensus pattern (4 bp):
TTTA
Found at i:63745047 original size:39 final size:40
Alignment explanation
Indices: 63744956--63745170 Score: 227
Period size: 39 Copynumber: 5.6 Consensus size: 40
63744946 AAGTGAATAT
* * * * **
63744956 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAA
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTGTTAA
63744996 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
63745035 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
63745075 ATCCGGGTTAAGTCCC----G-A-TCGTGCGA-TTGTTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
* * **
63745108 ATCCGGGTTATGT-CCGAAGGCATT-GTGTGAGTTACTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
* * *
63745146 AACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATT
63745171 TGAACGAGGA
Statistics
Matches: 154, Mismatches: 11, Indels: 21
0.83 0.06 0.11
Matches are distributed among these distances:
32 2 0.01
33 19 0.12
34 8 0.05
35 1 0.01
36 2 0.01
37 6 0.04
38 17 0.11
39 50 0.32
40 49 0.32
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.27
Consensus pattern (40 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
Found at i:63745053 original size:79 final size:78
Alignment explanation
Indices: 63744956--63745170 Score: 239
Period size: 79 Copynumber: 2.8 Consensus size: 78
63744946 AAGTGAATAT
* *
63744956 ATCCGGATTAAGATCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATT
1 ATCCGGGTTAAG-TCCGAAGGCCTTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATT
63745021 CGTGCGAGTT-TTAA
65 CGTGCGA-TTGTTAA
* * **
63745035 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCC----G-A-T
1 ATCCGGGTTAAGT-CCGAAGGCCTTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATT
63745094 CGTGCGATTGTTAA
65 CGTGCGATTGTTAA
* * * * * *
63745108 ATCCGGGTTATGTCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCGAAGGCCTTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATT
63745171 TGAACGAGGA
Statistics
Matches: 112, Mismatches: 16, Indels: 18
0.77 0.11 0.12
Matches are distributed among these distances:
71 25 0.22
72 9 0.08
73 24 0.21
74 1 0.01
75 2 0.02
76 1 0.01
77 1 0.01
78 1 0.01
79 48 0.43
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.27
Consensus pattern (78 bp):
ATCCGGGTTAAGTCCGAAGGCCTTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTC
GTGCGATTGTTAA
Found at i:63745190 original size:111 final size:111
Alignment explanation
Indices: 63744993--63745202 Score: 262
Period size: 111 Copynumber: 1.9 Consensus size: 111
63744983 TGCGAGATAC
* * *
63744993 TAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTTTAAATCCGGGTTAAGTCCCGAAGGCA
1 TAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTCTAAAACCGGGCTAAGTCCCGAAGGCA
** ** * *
63745058 TTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGATCGTGCGATTGT
66 TTCGAACGAGGAGCTAAATCC-GGTTAAATCCCGATCGTGCGATTGT
* * *
63745105 TAAATCCGGGTTATGT-CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGC
1 TAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-CTAAAACCGGGCTAAGTCCCGAAGGC
* *
63745168 ATTTGAACGAGGAGCTATATCCGGTTAAATCCCGA
65 ATTCGAACGAGGAGCTAAATCCGGTTAAATCCCGA
63745203 AGGTACGTGA
Statistics
Matches: 83, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
110 20 0.24
111 48 0.58
112 15 0.18
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (111 bp):
TAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTCTAAAACCGGGCTAAGTCCCGAAGGCA
TTCGAACGAGGAGCTAAATCCGGTTAAATCCCGATCGTGCGATTGT
Found at i:63768568 original size:39 final size:39
Alignment explanation
Indices: 63768477--63768698 Score: 295
Period size: 39 Copynumber: 5.6 Consensus size: 39
63768467 AAGTGAATAT
* * * **
63768477 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAA
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAG-TTTTAA
63768517 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTTTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTTTAA
63768556 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTTTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTTTAA
63768595 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAA
* * *
63768635 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAA
* * *
63768674 AACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATT
63768699 TGAACGAGGA
Statistics
Matches: 169, Mismatches: 11, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
39 113 0.67
40 56 0.33
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (39 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTTTAA
Found at i:63768586 original size:79 final size:78
Alignment explanation
Indices: 63768438--63768698 Score: 305
Period size: 79 Copynumber: 3.3 Consensus size: 78
63768428 TTGAATGCTG
* * * * * *
63768438 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAG-TGAATATATCCGGATTAAGAT-CCGAAGGCC
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTG-TTAAATCCGGGTTAAG-TCCCGAAGG-C
*
63768500 TTTGTGCGAGATACTAAA
62 ATTGTGCGAG-TACTAAA
63768518 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCATT-
**
63768582 GTGCGAGTTTTAAA
65 GTGCGAGTACTAAA
*
63768596 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTCCCGAAGGCATTG
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCATTG
*
63768661 TGTGAGTTACTAAA
66 TGCGAG-TACTAAA
* * *
63768675 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
63768699 TGAACGAGGA
Statistics
Matches: 159, Mismatches: 16, Indels: 13
0.85 0.09 0.07
Matches are distributed among these distances:
78 49 0.31
79 81 0.51
80 22 0.14
81 7 0.04
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (78 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCATTG
TGCGAGTACTAAA
Found at i:63768650 original size:118 final size:118
Alignment explanation
Indices: 63768439--63768698 Score: 310
Period size: 118 Copynumber: 2.2 Consensus size: 118
63768429 TGAATGCTGT
* * ** * * *
63768439 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGATTAAGATCCGAAGGCCTTT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGC-GAGT-TTTAAATCCGGATTAAGATCCGAAGGCATTC
* *
63768503 GTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAT
64 GTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTACTAAAA
* *
63768558 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTTTAAATCCGGGTTAAG-TCCCGAAGGCATTCG
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTTTAAATCCGGATTAAGAT-CCGAAGGCATTCG
* ** * *
63768622 TGCGAGTTGTTAAATCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAAA
65 TGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAAA
*
63768676 CCGGGCTATGTCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATT
63768699 TGAACGAGGA
Statistics
Matches: 120, Mismatches: 18, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
117 9 0.08
118 83 0.69
119 22 0.18
120 6 0.05
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (118 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTTTAAATCCGGATTAAGATCCGAAGGCATTCGT
GCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAAA
Found at i:63768718 original size:79 final size:79
Alignment explanation
Indices: 63768477--63768733 Score: 234
Period size: 79 Copynumber: 3.3 Consensus size: 79
63768467 AAGTGAATAT
* * * * * *
63768477 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCAT
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAG-TTCTAAAACCGGGCTAAGTCCCGAAGGCAT
** ***
63768541 TCGTGCGA-GTTTTAA
64 TCGAACGAGGAGCTAA
* * *
63768556 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTTTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTCTAAAACCGGGCTAAGTCCCGAAGGCATTC
** ** *
63768621 GTGCGAGTTGTTAA
66 GAACGAGGAGCTAA
* * *
63768635 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-CTAAAACCGGGCTAAGTCCCGAAGGCATT
* *
63768699 TGAACGAGGAGCTAT
65 CGAACGAGGAGCTAA
*
63768714 ATCC-GGTTAAATCCCGAAGG
1 ATCCGGGTTAAGTCCCGAAGG
63768734 TACGTGATTT
Statistics
Matches: 153, Mismatches: 22, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
78 59 0.39
79 94 0.61
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (79 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTCTAAAACCGGGCTAAGTCCCGAAGGCATTC
GAACGAGGAGCTAA
Found at i:63768722 original size:118 final size:117
Alignment explanation
Indices: 63768474--63768733 Score: 290
Period size: 118 Copynumber: 2.2 Consensus size: 117
63768464 GCTAAGTGAA
* *
63768474 TATATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGG
1 TATATCCGG-TTAAG-TCCCGAAGGCATTCGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGG
* * * ** ***
63768538 CATTCGTGCGAGTTTTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTT
64 CATTCGTGCGAGTTCTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGAGC
* * ** *
63768592 TAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTCCCGAAGGC
1 TATATCC-GGTTAAGTCCCGAAGGCATTCGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGC
* * *
63768657 ATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTTGAACGAGGAGC
65 ATTCGTGCGAGTT-CTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGA-GAGC
*
63768711 TATATCCGGTTAAATCCCGAAGG
1 TATATCCGGTTAAGTCCCGAAGG
63768734 TACGTGATTT
Statistics
Matches: 118, Mismatches: 20, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
117 9 0.08
118 100 0.85
119 9 0.08
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (117 bp):
TATATCCGGTTAAGTCCCGAAGGCATTCGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCA
TTCGTGCGAGTTCTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGAGC
Found at i:63770365 original size:6 final size:6
Alignment explanation
Indices: 63770354--63770379 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
63770344 AGTTGTAAAG
63770354 TTTTAT TTTTAT TTTTAT TTTTAT TT
1 TTTTAT TTTTAT TTTTAT TTTTAT TT
63770380 ATTTATTTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (6 bp):
TTTTAT
Found at i:63771427 original size:21 final size:21
Alignment explanation
Indices: 63771391--63771460 Score: 106
Period size: 21 Copynumber: 3.4 Consensus size: 21
63771381 ATCAGCTCAC
*
63771391 TTGAGCTC-ATTTTAGCTCGT
1 TTGAGCTCGAATTTAGCTCGT
63771411 TTGAGCTCGAATTTAGCTCGT
1 TTGAGCTCGAATTTAGCTCGT
*
63771432 TTTAGCTCGAATTTAGCTCGT
1 TTGAGCTCGAATTTAGCTCGT
*
63771453 TTCAGCTC
1 TTGAGCTC
63771461 ATTCCTTTTT
Statistics
Matches: 46, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
20 8 0.17
21 38 0.83
ACGTcount: A:0.17, C:0.21, G:0.20, T:0.41
Consensus pattern (21 bp):
TTGAGCTCGAATTTAGCTCGT
Found at i:63771430 original size:11 final size:10
Alignment explanation
Indices: 63771401--63771460 Score: 61
Period size: 10 Copynumber: 5.8 Consensus size: 10
63771391 TTGAGCTCAT
63771401 TTTAGCTCG-
1 TTTAGCTCGA
63771410 TTTGAGCTCGAA
1 TTT-AGCTCG-A
*
63771422 TTTAGCTCGT
1 TTTAGCTCGA
63771432 TTTAGCTCGAA
1 TTTAGCTCG-A
63771443 TTTAGCTCG-
1 TTTAGCTCGA
63771452 TTTCAGCTC
1 TTT-AGCTC
63771461 ATTCCTTTTT
Statistics
Matches: 44, Mismatches: 2, Indels: 9
0.80 0.04 0.16
Matches are distributed among these distances:
9 6 0.14
10 20 0.45
11 15 0.34
12 3 0.07
ACGTcount: A:0.17, C:0.22, G:0.20, T:0.42
Consensus pattern (10 bp):
TTTAGCTCGA
Found at i:63771702 original size:13 final size:13
Alignment explanation
Indices: 63771684--63771712 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
63771674 AATAGTTATG
63771684 TGTTATTTAATTA
1 TGTTATTTAATTA
63771697 TGTTATTTAATTA
1 TGTTATTTAATTA
63771710 TGT
1 TGT
63771713 AGGTTAGCTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.28, C:0.00, G:0.10, T:0.62
Consensus pattern (13 bp):
TGTTATTTAATTA
Found at i:63777998 original size:17 final size:17
Alignment explanation
Indices: 63777976--63778011 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
63777966 TTCTGGAATT
63777976 CAGCTTGGAAGAAATCC
1 CAGCTTGGAAGAAATCC
63777993 CAGCTTGGAAGAAATCC
1 CAGCTTGGAAGAAATCC
63778010 CA
1 CA
63778012 AGTAACTCGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.36, C:0.25, G:0.22, T:0.17
Consensus pattern (17 bp):
CAGCTTGGAAGAAATCC
Found at i:63784053 original size:10 final size:10
Alignment explanation
Indices: 63784040--63784074 Score: 52
Period size: 10 Copynumber: 3.5 Consensus size: 10
63784030 AAGCTCGGTT
63784040 GAGCTCAAAC
1 GAGCTCAAAC
*
63784050 GAGCTGAAAC
1 GAGCTCAAAC
*
63784060 GAGCTCAAAT
1 GAGCTCAAAC
63784070 GAGCT
1 GAGCT
63784075 GAGTTGAGCT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.37, C:0.23, G:0.26, T:0.14
Consensus pattern (10 bp):
GAGCTCAAAC
Found at i:63784083 original size:20 final size:20
Alignment explanation
Indices: 63784037--63784084 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
63784027 AGTAAGCTCG
63784037 GTTGAGCTCAAACGAGCTGA
1 GTTGAGCTCAAACGAGCTGA
*** *
63784057 AACGAGCTCAAATGAGCTGA
1 GTTGAGCTCAAACGAGCTGA
63784077 GTTGAGCT
1 GTTGAGCT
63784085 GGACGGAGCT
Statistics
Matches: 21, Mismatches: 7, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.31, C:0.19, G:0.29, T:0.21
Consensus pattern (20 bp):
GTTGAGCTCAAACGAGCTGA
Found at i:63786804 original size:5 final size:5
Alignment explanation
Indices: 63786794--63786850 Score: 55
Period size: 5 Copynumber: 11.0 Consensus size: 5
63786784 CTCTTGCCTC
*
63786794 TCTTT TCTTT T-TATT TCATTT TCTTT T-TCT TCTTT TGCTTTT TCTTT
1 TCTTT TCTTT TCT-TT TC-TTT TCTTT TCTTT TCTTT T-C-TTT TCTTT
63786841 TCTTT TCTTT
1 TCTTT TCTTT
63786851 ATTTTCTCTT
Statistics
Matches: 44, Mismatches: 2, Indels: 12
0.76 0.03 0.21
Matches are distributed among these distances:
4 4 0.09
5 29 0.66
6 6 0.14
7 5 0.11
ACGTcount: A:0.04, C:0.18, G:0.02, T:0.77
Consensus pattern (5 bp):
TCTTT
Found at i:63786834 original size:15 final size:14
Alignment explanation
Indices: 63786794--63786850 Score: 60
Period size: 16 Copynumber: 3.7 Consensus size: 14
63786784 CTCTTGCCTC
*
63786794 TCTTTTCTTTTTATT
1 TCTTTTCTTTTT-CT
63786809 TCATTTTCTTTTTCT
1 TC-TTTTCTTTTTCT
63786824 TCTTTTGCTTTTTCTTT
1 TCTTTT-CTTTTTC--T
63786841 TCTTTTCTTT
1 TCTTTTCTTT
63786851 ATTTTCTCTT
Statistics
Matches: 37, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
14 4 0.11
15 12 0.32
16 14 0.38
17 7 0.19
ACGTcount: A:0.04, C:0.18, G:0.02, T:0.77
Consensus pattern (14 bp):
TCTTTTCTTTTTCT
Found at i:63786860 original size:21 final size:20
Alignment explanation
Indices: 63786792--63786861 Score: 63
Period size: 20 Copynumber: 3.4 Consensus size: 20
63786782 GCCTCTTGCC
63786792 TCTCTTTTCTTTTTATTTCATTT
1 TCTCTTTTC-TTTT-TTT-ATTT
**
63786815 TCT-TTTTCTTCTTTTGCTTT
1 TCTCTTTTCTT-TTTTTATTT
63786835 T-TCTTTTCTTTTCTTTATTT
1 TCTCTTTTCTTTT-TTTATTT
63786855 TCTCTTT
1 TCTCTTT
63786862 ACAAGAATGT
Statistics
Matches: 39, Mismatches: 4, Indels: 10
0.74 0.08 0.19
Matches are distributed among these distances:
19 3 0.08
20 17 0.44
21 9 0.23
22 7 0.18
23 3 0.08
ACGTcount: A:0.04, C:0.19, G:0.01, T:0.76
Consensus pattern (20 bp):
TCTCTTTTCTTTTTTTATTT
Found at i:63787782 original size:11 final size:11
Alignment explanation
Indices: 63787766--63787831 Score: 89
Period size: 11 Copynumber: 5.7 Consensus size: 11
63787756 ATAAATCACT
63787766 TTTTTTTTGAA
1 TTTTTTTTGAA
63787777 TTTTTTTTGAA
1 TTTTTTTTGAA
63787788 TTTTTTTTCG-A
1 TTTTTTTT-GAA
63787799 TTTTTTTTGAAA
1 TTTTTTTTG-AA
63787811 TTTTTTTTTCGAA
1 -TTTTTTTT-GAA
63787824 TTTTTTTT
1 TTTTTTTT
63787832 CAAACTTGTA
Statistics
Matches: 50, Mismatches: 0, Indels: 9
0.85 0.00 0.15
Matches are distributed among these distances:
10 1 0.02
11 28 0.56
12 10 0.20
13 10 0.20
14 1 0.02
ACGTcount: A:0.15, C:0.03, G:0.08, T:0.74
Consensus pattern (11 bp):
TTTTTTTTGAA
Found at i:63787782 original size:12 final size:12
Alignment explanation
Indices: 63787765--63787831 Score: 86
Period size: 13 Copynumber: 5.7 Consensus size: 12
63787755 CATAAATCAC
63787765 TTTTTTTTTGAA
1 TTTTTTTTTGAA
63787777 -TTTTTTTTGAA
1 TTTTTTTTTGAA
*
63787788 TTTTTTTTCG-A
1 TTTTTTTTTGAA
63787799 -TTTTTTTTGAAA
1 TTTTTTTTTG-AA
63787811 TTTTTTTTTCGAA
1 TTTTTTTTT-GAA
63787824 TTTTTTTT
1 TTTTTTTT
63787832 CAAACTTGTA
Statistics
Matches: 48, Mismatches: 2, Indels: 9
0.81 0.03 0.15
Matches are distributed among these distances:
10 8 0.17
11 12 0.25
12 9 0.19
13 18 0.38
14 1 0.02
ACGTcount: A:0.15, C:0.03, G:0.07, T:0.75
Consensus pattern (12 bp):
TTTTTTTTTGAA
Found at i:63804179 original size:30 final size:30
Alignment explanation
Indices: 63804108--63804190 Score: 89
Period size: 30 Copynumber: 2.7 Consensus size: 30
63804098 CTTTTGTTTC
* *
63804108 AATTTCTTTTTCAGCTTCTTTTTCACTCTCA
1 AATTTCTTTTTC-GTTTCTTTTTCAATCTCA
63804139 AATTTC-TTTTCGTTCTCTTTTTCAATCTC-
1 AATTTCTTTTTCGTT-TCTTTTTCAATCTCA
* *
63804168 ATTTTCTTTTTCATTTTCTTTTT
1 AATTTCTTTTTC-GTTTCTTTTT
63804191 GCTTTTCAAA
Statistics
Matches: 45, Mismatches: 4, Indels: 7
0.80 0.07 0.12
Matches are distributed among these distances:
29 7 0.16
30 30 0.67
31 8 0.18
ACGTcount: A:0.13, C:0.22, G:0.02, T:0.63
Consensus pattern (30 bp):
AATTTCTTTTTCGTTTCTTTTTCAATCTCA
Found at i:63804190 original size:18 final size:18
Alignment explanation
Indices: 63804141--63804196 Score: 51
Period size: 18 Copynumber: 3.1 Consensus size: 18
63804131 CACTCTCAAA
* *
63804141 TTTC-TTTTCGTTCTCTT
1 TTTCATTTTCATTTTCTT
* *
63804158 TTTCAATCTCATTTTCTT
1 TTTCATTTTCATTTTCTT
*
63804176 TTTCATTTTCTTTTTGCTT
1 TTTCATTTTCATTTT-CTT
63804195 TT
1 TT
63804197 CAAAGGCTTT
Statistics
Matches: 30, Mismatches: 7, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
17 4 0.13
18 21 0.70
19 5 0.17
ACGTcount: A:0.07, C:0.20, G:0.04, T:0.70
Consensus pattern (18 bp):
TTTCATTTTCATTTTCTT
Found at i:63804197 original size:12 final size:12
Alignment explanation
Indices: 63804166--63804190 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
63804156 TTTTTCAATC
63804166 TCATTTTCTTTT
1 TCATTTTCTTTT
63804178 TCATTTTCTTTT
1 TCATTTTCTTTT
63804190 T
1 T
63804191 GCTTTTCAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.16, G:0.00, T:0.76
Consensus pattern (12 bp):
TCATTTTCTTTT
Found at i:63804269 original size:5 final size:5
Alignment explanation
Indices: 63804259--63804315 Score: 53
Period size: 5 Copynumber: 11.0 Consensus size: 5
63804249 CTCTTGCCTC
* * *
63804259 TCTTT TCTTTT TATTT TGTTT TCTTT T-TCT TCTTT TGCTTTT TCTTT
1 TCTTT TC-TTT TCTTT TCTTT TCTTT TCTTT TCTTT T-C-TTT TCTTT
63804306 TCTTT TCTTT
1 TCTTT TCTTT
63804316 GTTTTCTCTT
Statistics
Matches: 43, Mismatches: 5, Indels: 8
0.77 0.09 0.14
Matches are distributed among these distances:
4 3 0.07
5 30 0.70
6 6 0.14
7 4 0.09
ACGTcount: A:0.02, C:0.16, G:0.04, T:0.79
Consensus pattern (5 bp):
TCTTT
Found at i:63804291 original size:25 final size:25
Alignment explanation
Indices: 63804263--63804311 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 25
63804253 TGCCTCTCTT
*
63804263 TTCTTTT-TATTTTGTTTTCTTTTTC
1 TTCTTTTCT-TTTTCTTTTCTTTTTC
63804288 TTCTTTTGCTTTTTCTTTTCTTTT
1 TTCTTTT-CTTTTTCTTTTCTTTT
63804312 CTTTGTTTTC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
25 7 0.33
26 13 0.62
27 1 0.05
ACGTcount: A:0.02, C:0.14, G:0.04, T:0.80
Consensus pattern (25 bp):
TTCTTTTCTTTTTCTTTTCTTTTTC
Found at i:63804316 original size:21 final size:20
Alignment explanation
Indices: 63804272--63804326 Score: 60
Period size: 20 Copynumber: 2.7 Consensus size: 20
63804262 TTTCTTTTTA
63804272 TTTTG-TTTTCTTTTTCTTC
1 TTTTGTTTTTCTTTTTCTTC
*
63804291 TTTTGCTTTTTC-TTTTCTTT
1 TTTTG-TTTTTCTTTTTCTTC
63804311 TCTTTGTTTTCTCTTT
1 T-TTTGTTTT-TCTTT
63804327 ACAAAAATGT
Statistics
Matches: 30, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
19 5 0.17
20 12 0.40
21 11 0.37
22 2 0.07
ACGTcount: A:0.00, C:0.16, G:0.05, T:0.78
Consensus pattern (20 bp):
TTTTGTTTTTCTTTTTCTTC
Found at i:63806157 original size:169 final size:169
Alignment explanation
Indices: 63805878--63806210 Score: 648
Period size: 169 Copynumber: 2.0 Consensus size: 169
63805868 ATGAAAGAAA
63805878 ACAAATATTTATAGGCACATAGATGATGATACGAGCACACCCCGCGAACTTCATCGAGCAAGTCT
1 ACAAATATTTATAGGCACATAGATGATGATACGAGCACACCCCGCGAACTTCATCGAGCAAGTCT
63805943 GTAAAGCCGAGCATTGACATGTTGGCAAGCTGATCCCAGCTCGTTTCCAGCTCCACGAGCTCCGT
66 GTAAAGCCGAGCATTGACATGTTGGCAAGCTGATCCCAGCTCGTTTCCAGCTCCACGAGCTCCGT
63806008 CTAGCTCAAATCCAGCTTATTCAAGCTCGATCCAACTTT
131 CTAGCTCAAATCCAGCTTATTCAAGCTCGATCCAACTTT
63806047 ACAAATATTTATAGGCACATAGATGATGATACGAGCACACCCCGCGAACTTCATCGAGCAAGTCT
1 ACAAATATTTATAGGCACATAGATGATGATACGAGCACACCCCGCGAACTTCATCGAGCAAGTCT
*
63806112 GTCAAGCCGAGCATTGACATGTTGGCAAGCTGATCCCAGCTCGTTTCCAGCTCCACGAGCTCCGT
66 GTAAAGCCGAGCATTGACATGTTGGCAAGCTGATCCCAGCTCGTTTCCAGCTCCACGAGCTCCGT
*
63806177 CTAGCTCAAATCTAGCTTATTCAAGCTCGATCCA
131 CTAGCTCAAATCCAGCTTATTCAAGCTCGATCCA
63806211 GCAAAACTCA
Statistics
Matches: 162, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
169 162 1.00
ACGTcount: A:0.28, C:0.29, G:0.19, T:0.24
Consensus pattern (169 bp):
ACAAATATTTATAGGCACATAGATGATGATACGAGCACACCCCGCGAACTTCATCGAGCAAGTCT
GTAAAGCCGAGCATTGACATGTTGGCAAGCTGATCCCAGCTCGTTTCCAGCTCCACGAGCTCCGT
CTAGCTCAAATCCAGCTTATTCAAGCTCGATCCAACTTT
Found at i:63807311 original size:30 final size:30
Alignment explanation
Indices: 63807277--63807373 Score: 90
Period size: 30 Copynumber: 3.2 Consensus size: 30
63807267 TAAACTAAAA
63807277 TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
1 TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
* * * * * *
63807307 TGAGCTGAGGC-TAAACTCCTAAGCTGAAGT
1 TGAGCT-AAGCTTTAGCTCGTGAGCTAAAGT
* *
63807337 TGAGCTAAGGTTTAGCTCGTGAGTTGAAAG-
1 TGAGCTAAGCTTTAGCTCGTGAGCT-AAAGT
63807367 TGAGCTA
1 TGAGCTA
63807374 GGAGTGAGCT
Statistics
Matches: 50, Mismatches: 14, Indels: 6
0.71 0.20 0.09
Matches are distributed among these distances:
29 2 0.04
30 42 0.84
31 6 0.12
ACGTcount: A:0.28, C:0.15, G:0.29, T:0.28
Consensus pattern (30 bp):
TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
Found at i:63809440 original size:64 final size:64
Alignment explanation
Indices: 63809291--63809542 Score: 208
Period size: 68 Copynumber: 3.8 Consensus size: 64
63809281 TACAGATGGT
* ** * * *
63809291 ATGTAGCTAGGTCACATGTATGGTGCTGA-GTGCACATCATGT-GTACAAGAGAGCTATGAGACA
1 ATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGCTATGAG--A
*
63809354 TTATG
62 -TA-A
* * * *
63809359 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGATAGCTATGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTATGAGATAA
* * * *
63809423 ATGTAGCTAGGTCGCATGCGTGGTTCTAGGTGAAGGACACCATGTAGACAAGAGAGCTATGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTATGAGAT
63809488 AA
63 AA
* * *
63809490 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAG-ACAAGAGAGC
63809543 CAAAATTATG
Statistics
Matches: 152, Mismatches: 25, Indels: 19
0.78 0.13 0.10
Matches are distributed among these distances:
62 1 0.01
63 19 0.12
64 26 0.17
65 2 0.01
66 23 0.15
67 31 0.20
68 49 0.32
69 1 0.01
ACGTcount: A:0.29, C:0.15, G:0.29, T:0.26
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTATGAGATAA
Found at i:63809481 original size:67 final size:65
Alignment explanation
Indices: 63809335--63809488 Score: 175
Period size: 67 Copynumber: 2.3 Consensus size: 65
63809325 CATCATGTGT
* * * *
63809335 ACAAGAGAGCTATGAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATG
1 ACAAGAGAGCTATG-G-GA-TATGATGTAGCTAGGTCGCATGCGTGATACTATGAGGACACCATG
63809400 TAG
63 TAG
* * *
63809403 ACAAGATAGCTATGGGATAT-ATGTAGCTAGGTCGCATGCGTGGTTCTAGGTGAAGGACACCATG
1 ACAAGAGAGCTATGGGATATGATGTAGCTAGGTCGCATGCGTGATACTA--TG-AGGACACCATG
63809467 TAG
63 TAG
*
63809470 ACAAGAGAGCTATGAGATA
1 ACAAGAGAGCTATGGGATA
63809489 AACTGGCTAG
Statistics
Matches: 74, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
64 25 0.34
65 3 0.04
66 3 0.04
67 30 0.41
68 13 0.18
ACGTcount: A:0.32, C:0.14, G:0.29, T:0.25
Consensus pattern (65 bp):
ACAAGAGAGCTATGGGATATGATGTAGCTAGGTCGCATGCGTGATACTATGAGGACACCATGTAG
Found at i:63810897 original size:20 final size:20
Alignment explanation
Indices: 63810851--63810897 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
63810841 AGCTCGTTTC
*
63810851 CAGCTCACTCGAGCTCAAGT
1 CAGCTCACTCAAGCTCAAGT
* *
63810871 CAACTCACTCAAGCTCAATT
1 CAGCTCACTCAAGCTCAAGT
63810891 CAGCTCA
1 CAGCTCA
63810898 ATCTTAACCC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.30, C:0.36, G:0.13, T:0.21
Consensus pattern (20 bp):
CAGCTCACTCAAGCTCAAGT
Done.