Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 197 of 349
Found at i:63813127 original size:39 final size:40
Alignment explanation
Indices: 63812923--63813145 Score: 236
Period size: 40 Copynumber: 5.6 Consensus size: 40
63812913 TTGAATGCTG
* * * * * *
63812923 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAAA
** * * *
63812963 TCCGGACTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAA
*
63813003 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
**
63813043 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* *
63813083 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* * *
63813122 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
63813146 TGAACGAGGA
Statistics
Matches: 161, Mismatches: 19, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
39 35 0.22
40 118 0.73
41 8 0.05
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
Found at i:63813165 original size:79 final size:80
Alignment explanation
Indices: 63812998--63813180 Score: 226
Period size: 79 Copynumber: 2.3 Consensus size: 80
63812988 GTGCGAGATA
* * *
63812998 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
** **
63813063 CATTCGTGCGAGTTG
66 CATTCGAACGAGGAG
* * * *
63813078 TTAAATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
*
63813142 CATTTGAACGAGGAG
66 CATTCGAACGAGGAG
* *
63813157 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
63813181 TACGTGATTT
Statistics
Matches: 87, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
78 14 0.16
79 46 0.53
80 27 0.31
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.26
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
CATTCGAACGAGGAG
Found at i:63819519 original size:20 final size:20
Alignment explanation
Indices: 63819496--63819542 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
63819486 AGGTTAAGAT
*
63819496 TGAGCTGAATTGAGCTTGAA
1 TGAGCTGAATTGAGCTCGAA
* * *
63819516 TGAGTTGACTTGAGCTCGAG
1 TGAGCTGAATTGAGCTCGAA
63819536 TGAGCTG
1 TGAGCTG
63819543 GAAACAAGCT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.23, C:0.13, G:0.34, T:0.30
Consensus pattern (20 bp):
TGAGCTGAATTGAGCTCGAA
Found at i:63821268 original size:48 final size:48
Alignment explanation
Indices: 63821213--63821318 Score: 137
Period size: 48 Copynumber: 2.2 Consensus size: 48
63821203 TTGTCTTTTC
*
63821213 TTTCTTTTTCAATTT-TCTCT-TTTTCCTCACA-CTTTTGTTCAATCTCAA
1 TTTCTTTTTCAATTTCTCTCTCTTTT--TCACATCCTTT-TTCAATCTCAA
* *
63821261 TTTCTTTTTCGATTTCTTTCTCTTTTTCACATCCTTTTTCAATCTCAA
1 TTTCTTTTTCAATTTCTCTCTCTTTTTCACATCCTTTTTCAATCTCAA
63821309 TTTCTTTTTC
1 TTTCTTTTTC
63821319 CATGACACTC
Statistics
Matches: 52, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
48 40 0.77
49 8 0.15
50 4 0.08
ACGTcount: A:0.14, C:0.25, G:0.02, T:0.59
Consensus pattern (48 bp):
TTTCTTTTTCAATTTCTCTCTCTTTTTCACATCCTTTTTCAATCTCAA
Found at i:63822967 original size:20 final size:20
Alignment explanation
Indices: 63822944--63822990 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
63822934 AGGTTAAGAT
*
63822944 TGAGCTGAATTGAGCTTGAA
1 TGAGCTGAATTGAGCTCGAA
* * *
63822964 TGAGTTGACTTGAGCTCGAG
1 TGAGCTGAATTGAGCTCGAA
63822984 TGAGCTG
1 TGAGCTG
63822991 GAAACAAGCT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.23, C:0.13, G:0.34, T:0.30
Consensus pattern (20 bp):
TGAGCTGAATTGAGCTCGAA
Found at i:63825948 original size:39 final size:40
Alignment explanation
Indices: 63825744--63825966 Score: 236
Period size: 40 Copynumber: 5.6 Consensus size: 40
63825734 TTGAATGCTG
* * * * * *
63825744 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAAA
** * * *
63825784 TCCGGACTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAA
*
63825824 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
**
63825864 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* *
63825904 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* * *
63825943 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
63825967 TGAACGAGGA
Statistics
Matches: 161, Mismatches: 19, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
39 35 0.22
40 118 0.73
41 8 0.05
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
Found at i:63825986 original size:79 final size:80
Alignment explanation
Indices: 63825819--63826001 Score: 226
Period size: 79 Copynumber: 2.3 Consensus size: 80
63825809 GTGCGAGATA
* * *
63825819 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
** **
63825884 CATTCGTGCGAGTTG
66 CATTCGAACGAGGAG
* * * *
63825899 TTAAATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
*
63825963 CATTTGAACGAGGAG
66 CATTCGAACGAGGAG
* *
63825978 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
63826002 TACGTGATTT
Statistics
Matches: 87, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
78 14 0.16
79 46 0.53
80 27 0.31
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.26
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
CATTCGAACGAGGAG
Found at i:63828291 original size:12 final size:12
Alignment explanation
Indices: 63828274--63828345 Score: 74
Period size: 12 Copynumber: 5.8 Consensus size: 12
63828264 TTGGAGTAAC
63828274 AAAAAAAA-TCA
1 AAAAAAAATTCA
63828285 AAAAAAAATTCGA
1 AAAAAAAATTC-A
*
63828298 AAAAAAATTGATTGA
1 AAAAAAA---ATTCA
63828313 AAAAAAAATTCA
1 AAAAAAAATTCA
* *
63828325 AAAAAAAAGTGA
1 AAAAAAAATTCA
63828337 AAAAAAAAT
1 AAAAAAAAT
63828346 CGAGCAAAAA
Statistics
Matches: 51, Mismatches: 5, Indels: 9
0.78 0.08 0.14
Matches are distributed among these distances:
11 8 0.16
12 24 0.47
13 8 0.16
15 8 0.16
16 3 0.06
ACGTcount: A:0.74, C:0.04, G:0.07, T:0.15
Consensus pattern (12 bp):
AAAAAAAATTCA
Found at i:63828343 original size:28 final size:28
Alignment explanation
Indices: 63828284--63828344 Score: 77
Period size: 28 Copynumber: 2.2 Consensus size: 28
63828274 AAAAAAAATC
* * ***
63828284 AAAAAAAAATTCGAAAAAAAATTGATTG
1 AAAAAAAAATTCAAAAAAAAAGTGAAAA
63828312 AAAAAAAAATTCAAAAAAAAAGTGAAAA
1 AAAAAAAAATTCAAAAAAAAAGTGAAAA
63828340 AAAAA
1 AAAAA
63828345 TCGAGCAAAA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.74, C:0.03, G:0.08, T:0.15
Consensus pattern (28 bp):
AAAAAAAAATTCAAAAAAAAAGTGAAAA
Found at i:63828354 original size:15 final size:15
Alignment explanation
Indices: 63828323--63828374 Score: 58
Period size: 16 Copynumber: 3.6 Consensus size: 15
63828313 AAAAAAAATT
63828323 CAAAAAAAAAGT--G
1 CAAAAAAAAAGTGAG
63828336 -AAAAAAAAA-TCGAG
1 CAAAAAAAAAGT-GAG
63828350 CAAAAAAAAAGGTGAG
1 CAAAAAAAAA-GTGAG
63828366 CAAAAAAAA
1 CAAAAAAAA
63828375 TCAAGTTAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 9
0.79 0.00 0.21
Matches are distributed among these distances:
11 1 0.03
12 9 0.27
14 1 0.03
15 9 0.27
16 12 0.36
17 1 0.03
ACGTcount: A:0.71, C:0.08, G:0.15, T:0.06
Consensus pattern (15 bp):
CAAAAAAAAAGTGAG
Found at i:63828356 original size:24 final size:24
Alignment explanation
Indices: 63828274--63828345 Score: 83
Period size: 24 Copynumber: 2.9 Consensus size: 24
63828264 TTGGAGTAAC
*
63828274 AAAAAAAA-TCAAAAAAAAATTCGA
1 AAAAAAAAGTGAAAAAAAAATTC-A
*
63828298 AAAAAAATTGATTGAAAAAAAAATTCA
1 AAAAAAA---AGTGAAAAAAAAATTCA
63828325 AAAAAAAAGTGAAAAAAAAAT
1 AAAAAAAAGTGAAAAAAAAAT
63828346 CGAGCAAAAA
Statistics
Matches: 42, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
24 20 0.48
27 9 0.21
28 13 0.31
ACGTcount: A:0.74, C:0.04, G:0.07, T:0.15
Consensus pattern (24 bp):
AAAAAAAAGTGAAAAAAAAATTCA
Found at i:63828356 original size:40 final size:38
Alignment explanation
Indices: 63828274--63828359 Score: 86
Period size: 40 Copynumber: 2.2 Consensus size: 38
63828264 TTGGAGTAAC
* * *
63828274 AAAAAAAATCAAAAAAAAATTCGAAAAAAAATTGATTGA
1 AAAAAAAAACAAAAAAAAAGTCGAAAAAAAATCGA-TGA
* *
63828313 AAAAAAAATTCAAAAAAAAAGT-GAAAAAAAAATCGA-GC
1 AAAAAAAA-ACAAAAAAAAAGTCG-AAAAAAAATCGATGA
63828351 AAAAAAAAA
1 AAAAAAAAA
63828360 GGTGAGCAAA
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
38 9 0.22
39 9 0.22
40 23 0.56
ACGTcount: A:0.73, C:0.06, G:0.08, T:0.13
Consensus pattern (38 bp):
AAAAAAAAACAAAAAAAAAGTCGAAAAAAAATCGATGA
Found at i:63828371 original size:30 final size:28
Alignment explanation
Indices: 63828323--63828396 Score: 89
Period size: 30 Copynumber: 2.6 Consensus size: 28
63828313 AAAAAAAATT
*
63828323 CAAAAAAAAA-GTGAAAAAAAAATCGAG
1 CAAAAAAAAAGGTGAAAAAAAAATCAAG
63828350 CAAAAAAAAAGGTGAGCAAAAAAAATCAAG
1 CAAAAAAAAAGGTGA--AAAAAAAATCAAG
**
63828380 TTAAAAAAAA-GTGAAAA
1 CAAAAAAAAAGGTGAAAA
63828397 GTCTTGCGAG
Statistics
Matches: 41, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
27 13 0.32
28 4 0.10
29 4 0.10
30 20 0.49
ACGTcount: A:0.69, C:0.07, G:0.15, T:0.09
Consensus pattern (28 bp):
CAAAAAAAAAGGTGAAAAAAAAATCAAG
Found at i:63829289 original size:18 final size:18
Alignment explanation
Indices: 63829268--63829302 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
63829258 AGAAAAGAAA
63829268 ATTGA-AAAAGAAATTGAG
1 ATTGAGAAAA-AAATTGAG
63829286 ATTGAGAAAAAAATTGA
1 ATTGAGAAAAAAATTGA
63829303 AAAAGAAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.57, C:0.00, G:0.20, T:0.23
Consensus pattern (18 bp):
ATTGAGAAAAAAATTGAG
Found at i:63831024 original size:20 final size:20
Alignment explanation
Indices: 63830978--63831024 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
63830968 AGCTCGTTTC
*
63830978 CAGCTCACTCGAGCTCAAGT
1 CAGCTCACTCAAGCTCAAGT
* *
63830998 CAACTCACTCAAGCTCAATT
1 CAGCTCACTCAAGCTCAAGT
63831018 CAGCTCA
1 CAGCTCA
63831025 ATCTTAACCC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.30, C:0.36, G:0.13, T:0.21
Consensus pattern (20 bp):
CAGCTCACTCAAGCTCAAGT
Found at i:63845269 original size:13 final size:12
Alignment explanation
Indices: 63845236--63845267 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
63845226 AGGAAATTAG
63845236 AAAAAAAATTCA
1 AAAAAAAATTCA
63845248 AAAAAAAATTCA
1 AAAAAAAATTCA
63845260 AAAAAAAA
1 AAAAAAAA
63845268 ATCGAAGTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.81, C:0.06, G:0.00, T:0.12
Consensus pattern (12 bp):
AAAAAAAATTCA
Found at i:63847630 original size:21 final size:21
Alignment explanation
Indices: 63847581--63847647 Score: 71
Period size: 21 Copynumber: 3.1 Consensus size: 21
63847571 CCTCTTTGAA
* * *
63847581 CCATAACCAATTCGTACCAAATA
1 CCAT-ACCATTTCATACC-AATT
*
63847604 CCATACTATTTCATACCAATT
1 CCATACCATTTCATACCAATT
*
63847625 CCATACCATTTCGTACCAATT
1 CCATACCATTTCATACCAATT
63847646 CC
1 CC
63847648 CAAATACCAA
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
21 24 0.63
22 10 0.26
23 4 0.11
ACGTcount: A:0.34, C:0.33, G:0.03, T:0.30
Consensus pattern (21 bp):
CCATACCATTTCATACCAATT
Found at i:63852539 original size:24 final size:25
Alignment explanation
Indices: 63852486--63852539 Score: 60
Period size: 24 Copynumber: 2.2 Consensus size: 25
63852476 AACAAATTCT
* *
63852486 TTTTTTCATTTTCATCACTCGTTTC
1 TTTTTTCATTTTAATCACTCGTCTC
63852511 -TTTTTC-TTTTGAATCACTC-TCTC
1 TTTTTTCATTTT-AATCACTCGTCTC
63852534 TTTTTT
1 TTTTTT
63852540 TATCACTCAT
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
23 7 0.28
24 18 0.72
ACGTcount: A:0.11, C:0.22, G:0.04, T:0.63
Consensus pattern (25 bp):
TTTTTTCATTTTAATCACTCGTCTC
Found at i:63860272 original size:14 final size:14
Alignment explanation
Indices: 63860253--63860282 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
63860243 CAAAGTTAGA
63860253 AGTTTCTTGGGGCT
1 AGTTTCTTGGGGCT
63860267 AGTTTCTTGGGGCT
1 AGTTTCTTGGGGCT
63860281 AG
1 AG
63860283 CTGGGTATTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.10, C:0.13, G:0.37, T:0.40
Consensus pattern (14 bp):
AGTTTCTTGGGGCT
Found at i:63863216 original size:30 final size:30
Alignment explanation
Indices: 63863160--63863216 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
63863150 ATCCCGAGCC
*
63863160 TAGGGGCAAAAATGTAAATATGCAAAAGTT
1 TAGGGGCAAAAATGTAAATATCCAAAAGTT
* * *
63863190 TAGGGGCAAAATTGTAATTTTCCAAAA
1 TAGGGGCAAAAATGTAAATATCCAAAA
63863217 TTTGAGTTAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.44, C:0.09, G:0.21, T:0.26
Consensus pattern (30 bp):
TAGGGGCAAAAATGTAAATATCCAAAAGTT
Found at i:63863681 original size:46 final size:46
Alignment explanation
Indices: 63863631--63863806 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
63863621 TGGTTGAGCA
63863631 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
63863677 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
63863722 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
63863770 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
63863807 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:63863787 original size:93 final size:93
Alignment explanation
Indices: 63863628--63863799 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
63863618 GGATGGTTGA
* *
63863628 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
63863693 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
63863721 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
63863786 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
63863800 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:63865497 original size:93 final size:93
Alignment explanation
Indices: 63865389--63865561 Score: 292
Period size: 93 Copynumber: 1.9 Consensus size: 93
63865379 CGCCCATAAG
* * *
63865389 CGAACTCGAACTCAACTCAACGAGCTCGGGCGTTCGCATCCGTAAGTGAACTCGGACTCAACTCA
1 CGAACTCGAACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
63865454 ACGAGCTTGGATGCCTAGTTACATCTCA
66 ACGAGCTCGGATGCCTAGTTACATCTCA
* *
63865482 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCGACTCA
1 CGAACTCGAACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
63865547 ACGAGCTCGGATGCC
66 ACGAGCTCGGATGCC
63865562 CAAATATCCT
Statistics
Matches: 74, Mismatches: 6, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.27, C:0.31, G:0.22, T:0.20
Consensus pattern (93 bp):
CGAACTCGAACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCA
Found at i:63865557 original size:46 final size:46
Alignment explanation
Indices: 63865382--63865557 Score: 189
Period size: 46 Copynumber: 3.8 Consensus size: 46
63865372 TGTAACCCGC
* * *
63865382 CCATAAGCGAACTCGAACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* * * *
63865428 CCGTAAGTGAACTCGGACTCAACTCAACGAGCTTGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA---C-A-TTCGCAT
*
63865478 -C-TCA-CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* *
63865521 CCATAAGTGAACTCGGACTCGACTCAACGAGCTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA
63865558 TGCCCAAATA
Statistics
Matches: 107, Mismatches: 14, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 60 0.56
47 28 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.28, C:0.31, G:0.22, T:0.19
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:63868624 original size:93 final size:93
Alignment explanation
Indices: 63868462--63868633 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
63868452 GCCCATAAGT
* * * * *
63868462 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAGGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
63868527 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
* **
63868555 GAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAACTCAGACTCAACTCTT
1 GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
63868620 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
63868634 CAAATATCCT
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:63871798 original size:93 final size:93
Alignment explanation
Indices: 63871690--63871862 Score: 292
Period size: 93 Copynumber: 1.9 Consensus size: 93
63871680 CGCCCATAAG
* * *
63871690 CGAACTCGAACTCAACTCAACGAGCTCGGGCGTTCGCATCCGTAAGTGAACTCGGACTCAACTCA
1 CGAACTCGAACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
63871755 ACGAGCTTGGATGCCTAGTTACATCTCA
66 ACGAGCTCGGATGCCTAGTTACATCTCA
* *
63871783 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCGACTCA
1 CGAACTCGAACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
63871848 ACGAGCTCGGATGCC
66 ACGAGCTCGGATGCC
63871863 CAAATATCCT
Statistics
Matches: 74, Mismatches: 6, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.27, C:0.31, G:0.22, T:0.20
Consensus pattern (93 bp):
CGAACTCGAACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCA
Found at i:63871858 original size:46 final size:46
Alignment explanation
Indices: 63871683--63871858 Score: 189
Period size: 46 Copynumber: 3.8 Consensus size: 46
63871673 TGTAACCCGC
* * *
63871683 CCATAAGCGAACTCGAACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* * * *
63871729 CCGTAAGTGAACTCGGACTCAACTCAACGAGCTTGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA---C-A-TTCGCAT
*
63871779 -C-TCA-CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* *
63871822 CCATAAGTGAACTCGGACTCGACTCAACGAGCTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA
63871859 TGCCCAAATA
Statistics
Matches: 107, Mismatches: 14, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 60 0.56
47 28 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.28, C:0.31, G:0.22, T:0.19
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:63874900 original size:46 final size:46
Alignment explanation
Indices: 63874750--63874924 Score: 155
Period size: 46 Copynumber: 3.8 Consensus size: 46
63874740 TGTAACATGC
* * ***
63874750 CCATAAGTGAACTCAGACTCAACTTAACGAGCTCGGGTGTTCGCAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
63874796 CCATAGGTGAACTCAGACTCAACTCAACGAG-TCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* * * *
63874845 --TTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCAT
63874888 CCATAAGTGAACTC-GAACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCAG-ACTCAACTCAACGAGTTCGGA
63874925 TGCCCAAATA
Statistics
Matches: 103, Mismatches: 15, Indels: 22
0.74 0.11 0.16
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 7 0.07
46 78 0.76
47 6 0.06
49 3 0.03
50 2 0.02
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:63874915 original size:92 final size:93
Alignment explanation
Indices: 63874758--63874928 Score: 256
Period size: 92 Copynumber: 1.8 Consensus size: 93
63874748 GCCCATAAGT
* *** *
63874758 GAACTCAGACTCAACTTAACGAGCTCGGGTGTTCGCATCCATAGGTGAACTCAGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
63874823 CGAG-TCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
* *
63874850 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTC-GAACTCAACTCA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAG-ACTCAACTCA
63874914 ACGAGTTCGGATGCC
65 ACGAGTTCGGATGCC
63874929 CAAATATCCC
Statistics
Matches: 70, Mismatches: 7, Indels: 3
0.88 0.09 0.04
Matches are distributed among these distances:
91 1 0.01
92 60 0.86
93 9 0.13
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:63877354 original size:15 final size:14
Alignment explanation
Indices: 63877306--63877384 Score: 68
Period size: 15 Copynumber: 5.4 Consensus size: 14
63877296 CAAAGATAAC
*
63877306 AAGAAAACCGAATA
1 AAGAAATCCGAATA
*
63877320 AAGAAATCCAAGATA
1 AAGAAATCCGA-ATA
* *
63877335 GAGAAACCCGGAATA
1 AAGAAATCC-GAATA
63877350 AAGAAATCCAGAATA
1 AAGAAATCC-GAATA
* *
63877365 AAGATATCCAGGATA
1 AAGAAATCC-GAATA
63877380 AAGAA
1 AAGAA
63877385 CCTAAGATAC
Statistics
Matches: 52, Mismatches: 11, Indels: 3
0.79 0.17 0.05
Matches are distributed among these distances:
14 9 0.17
15 42 0.81
16 1 0.02
ACGTcount: A:0.57, C:0.14, G:0.18, T:0.11
Consensus pattern (14 bp):
AAGAAATCCGAATA
Found at i:63877381 original size:30 final size:30
Alignment explanation
Indices: 63877315--63877384 Score: 81
Period size: 30 Copynumber: 2.3 Consensus size: 30
63877305 CAAGAAAACC
* *
63877315 GAATAAAGAAATCCAAGATAGAGAAACCCG
1 GAATAAAGAAATCCAAGATAAAGAAACCAG
*
63877345 GAATAAAGAAATCC-AGAATAAAGATATCCAG
1 GAATAAAGAAATCCAAG-ATAAAGA-AACCAG
63877376 G-ATAAAGAA
1 GAATAAAGAA
63877385 CCTAAGATAC
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
29 2 0.06
30 28 0.80
31 5 0.14
ACGTcount: A:0.56, C:0.13, G:0.19, T:0.13
Consensus pattern (30 bp):
GAATAAAGAAATCCAAGATAAAGAAACCAG
Found at i:63883362 original size:7 final size:7
Alignment explanation
Indices: 63883350--63883400 Score: 50
Period size: 7 Copynumber: 7.1 Consensus size: 7
63883340 ACTCTCCTCA
63883350 TTCTTTT
1 TTCTTTT
63883357 TTCTTTT
1 TTCTTTT
63883364 TTCTTTT
1 TTCTTTT
**
63883371 CACTCTTT
1 TTCT-TTT
*
63883379 TT-GTTT
1 TTCTTTT
63883385 TTCTCTTT
1 TTCT-TTT
63883393 TTCTTTT
1 TTCTTTT
63883400 T
1 T
63883401 CTCGATCAAT
Statistics
Matches: 35, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
6 5 0.14
7 20 0.57
8 10 0.29
ACGTcount: A:0.02, C:0.18, G:0.02, T:0.78
Consensus pattern (7 bp):
TTCTTTT
Found at i:63883379 original size:16 final size:14
Alignment explanation
Indices: 63883350--63883399 Score: 50
Period size: 16 Copynumber: 3.5 Consensus size: 14
63883340 ACTCTCCTCA
*
63883350 TTCTTTTTTCTTTT
1 TTCTTTTCTCTTTT
63883364 TTCTTTTCACTCTTTT
1 TTCTTTT--CTCTTTT
63883380 TGT-TTTTCTC-TTT
1 T-TCTTTTCTCTTTT
63883393 TTCTTTT
1 TTCTTTT
63883400 TCTCGATCAA
Statistics
Matches: 31, Mismatches: 1, Indels: 9
0.76 0.02 0.22
Matches are distributed among these distances:
12 1 0.03
13 8 0.26
14 10 0.32
16 11 0.35
17 1 0.03
ACGTcount: A:0.02, C:0.18, G:0.02, T:0.78
Consensus pattern (14 bp):
TTCTTTTCTCTTTT
Found at i:63883401 original size:14 final size:14
Alignment explanation
Indices: 63883354--63883403 Score: 66
Period size: 14 Copynumber: 3.6 Consensus size: 14
63883344 TCCTCATTCT
63883354 TTTTTCT-TTTTTC
1 TTTTTCTCTTTTTC
* *
63883367 TTTTCACTCTTTTTG
1 TTTT-TCTCTTTTTC
63883382 TTTTTCTCTTTTTC
1 TTTTTCTCTTTTTC
63883396 TTTTTCTC
1 TTTTTCTC
63883404 GATCAATAGA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
13 4 0.13
14 18 0.58
15 9 0.29
ACGTcount: A:0.02, C:0.20, G:0.02, T:0.76
Consensus pattern (14 bp):
TTTTTCTCTTTTTC
Found at i:63885438 original size:10 final size:10
Alignment explanation
Indices: 63885423--63885452 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
63885413 TAATCACTTC
63885423 TCTTTTTTTT
1 TCTTTTTTTT
63885433 TC-TTTTTTT
1 TCTTTTTTTT
63885442 TCTTTTTTTT
1 TCTTTTTTTT
63885452 T
1 T
63885453 TTAATTCCAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
9 9 0.47
10 10 0.53
ACGTcount: A:0.00, C:0.10, G:0.00, T:0.90
Consensus pattern (10 bp):
TCTTTTTTTT
Found at i:63885440 original size:9 final size:9
Alignment explanation
Indices: 63885426--63885451 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
63885416 TCACTTCTCT
63885426 TTTTTTTTC
1 TTTTTTTTC
63885435 TTTTTTTTC
1 TTTTTTTTC
63885444 TTTTTTTT
1 TTTTTTTT
63885452 TTTAATTCCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.00, C:0.08, G:0.00, T:0.92
Consensus pattern (9 bp):
TTTTTTTTC
Found at i:63888680 original size:93 final size:93
Alignment explanation
Indices: 63888521--63888692 Score: 283
Period size: 93 Copynumber: 1.8 Consensus size: 93
63888511 GCCCATAAGT
* * *
63888521 GAACTCGGACTCAACTCAATGAGCTCGGGAGTTCGCATCCATAGGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGGAATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
63888586 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
* *
63888614 GAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCATCCATAAGTGAACTCGGGCTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTCGGGA-ATTCGCATCCATAAGTGAACTCGGACTCAACTCA
63888678 ACGAGTTCGGATGCC
65 ACGAGTTCGGATGCC
63888693 CAAATATCCC
Statistics
Matches: 73, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
92 3 0.04
93 70 0.96
ACGTcount: A:0.27, C:0.28, G:0.23, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGGAATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:63888681 original size:46 final size:46
Alignment explanation
Indices: 63888513--63888688 Score: 182
Period size: 46 Copynumber: 3.8 Consensus size: 46
63888503 TGTAACCCGC
* * *
63888513 CCATAAGTGAACTCGGACTCAACTCAATGAGCTCGGGA-GTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCAT
* *
63888559 CCATAGGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* * *
63888609 --TTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
63888652 CCATAAGTGAACTCGGGCTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
63888689 TGCCCAAATA
Statistics
Matches: 106, Mismatches: 14, Indels: 20
0.76 0.10 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 5 0.05
46 59 0.56
47 29 0.27
48 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:63894363 original size:19 final size:19
Alignment explanation
Indices: 63894339--63894378 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
63894329 AGCTCCCATG
63894339 TAGCTCCACACCAGCTCAT
1 TAGCTCCACACCAGCTCAT
***
63894358 TAGCTCGGGACCAGCTCAT
1 TAGCTCCACACCAGCTCAT
63894377 TA
1 TA
63894379 TCAGCTCACG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.25, C:0.35, G:0.17, T:0.23
Consensus pattern (19 bp):
TAGCTCCACACCAGCTCAT
Found at i:63895642 original size:14 final size:14
Alignment explanation
Indices: 63895620--63895667 Score: 60
Period size: 14 Copynumber: 3.4 Consensus size: 14
63895610 ACCTAAACCG
* *
63895620 ACCAATTTGTTCAT
1 ACCATTTTGTTCCT
63895634 ACCATTTTGTTCCT
1 ACCATTTTGTTCCT
* *
63895648 ACCCTTTCGTTCCT
1 ACCATTTTGTTCCT
63895662 ACCATT
1 ACCATT
63895668 CCATTCGTAC
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 29 1.00
ACGTcount: A:0.19, C:0.31, G:0.06, T:0.44
Consensus pattern (14 bp):
ACCATTTTGTTCCT
Found at i:63904514 original size:13 final size:13
Alignment explanation
Indices: 63904496--63904524 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
63904486 TGGCTAACCT
63904496 ACATAATTAAATA
1 ACATAATTAAATA
63904509 ACATAATTAAATA
1 ACATAATTAAATA
63904522 ACA
1 ACA
63904525 CACAACTATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.62, C:0.10, G:0.00, T:0.28
Consensus pattern (13 bp):
ACATAATTAAATA
Found at i:63904802 original size:20 final size:21
Alignment explanation
Indices: 63904748--63904803 Score: 69
Period size: 21 Copynumber: 2.7 Consensus size: 21
63904738 AAAAAGGAAT
* *
63904748 GAGCTGAAATGAGCTAAATTC
1 GAGCTCAAATGAGCTAAATAC
*
63904769 GAGCTCAAACGAGCTAAA-AC
1 GAGCTCAAATGAGCTAAATAC
*
63904789 GAGCTCAAGTGAGCT
1 GAGCTCAAATGAGCT
63904804 GATGGGAACT
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
20 14 0.47
21 16 0.53
ACGTcount: A:0.38, C:0.20, G:0.25, T:0.18
Consensus pattern (21 bp):
GAGCTCAAATGAGCTAAATAC
Found at i:63913147 original size:28 final size:28
Alignment explanation
Indices: 63913116--63913190 Score: 87
Period size: 29 Copynumber: 2.6 Consensus size: 28
63913106 GGCCCACTGA
*
63913116 GCCCAATCATATTCATATGGCCCATTAG
1 GCCCAATCACATTCATATGGCCCATTAG
** *
63913144 GCCCAAATCACATTTTTATGGCCCGTTAG
1 GCCC-AATCACATTCATATGGCCCATTAG
* *
63913173 GCCTAGTCACATTCATAT
1 GCCCAATCACATTCATAT
63913191 TCATGCTCAC
Statistics
Matches: 38, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
28 15 0.39
29 23 0.61
ACGTcount: A:0.27, C:0.28, G:0.15, T:0.31
Consensus pattern (28 bp):
GCCCAATCACATTCATATGGCCCATTAG
Found at i:63913438 original size:16 final size:16
Alignment explanation
Indices: 63913419--63913453 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
63913409 CTTTTTGACA
* *
63913419 TTTCGGCATTTCGGCT
1 TTTCAGCATTTCAGCT
63913435 TTTCAGCATTTCAGCT
1 TTTCAGCATTTCAGCT
63913451 TTT
1 TTT
63913454 GCCGATACAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.11, C:0.23, G:0.17, T:0.49
Consensus pattern (16 bp):
TTTCAGCATTTCAGCT
Found at i:63913833 original size:16 final size:16
Alignment explanation
Indices: 63913812--63913846 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
63913802 TAGAAAATTC
63913812 TGGATTTC-AGGATTTT
1 TGGATTTCGA-GATTTT
63913828 TGGATTTCGAGATTTT
1 TGGATTTCGAGATTTT
63913844 TGG
1 TGG
63913847 GGCATTACAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 17 0.94
17 1 0.06
ACGTcount: A:0.17, C:0.06, G:0.29, T:0.49
Consensus pattern (16 bp):
TGGATTTCGAGATTTT
Found at i:63919894 original size:20 final size:20
Alignment explanation
Indices: 63919869--63919908 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
63919859 GTACTTTGAA
63919869 AATGTATATATTAAAGTATG
1 AATGTATATATTAAAGTATG
63919889 AATGTATATATTAAAGTATG
1 AATGTATATATTAAAGTATG
63919909 GCATGTATAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.45, C:0.00, G:0.15, T:0.40
Consensus pattern (20 bp):
AATGTATATATTAAAGTATG
Found at i:63922262 original size:38 final size:38
Alignment explanation
Indices: 63922211--63922288 Score: 138
Period size: 38 Copynumber: 2.1 Consensus size: 38
63922201 TACTTCTGTG
*
63922211 ATTGCTTTGATAGATCCTGGGTCAACACATTCATATGT
1 ATTGCTTTGATAGATCCTGGATCAACACATTCATATGT
*
63922249 ATTGCTTTGATAGATCCTGGATCAACACATTCGTATGT
1 ATTGCTTTGATAGATCCTGGATCAACACATTCATATGT
63922287 AT
1 AT
63922289 GCATGAACAT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.27, C:0.18, G:0.18, T:0.37
Consensus pattern (38 bp):
ATTGCTTTGATAGATCCTGGATCAACACATTCATATGT
Found at i:63925663 original size:20 final size:20
Alignment explanation
Indices: 63925640--63925687 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
63925630 TCCCAACTCG
*
63925640 ATTTAGCTCACATGAGCTTA
1 ATTTAGCTCACATGAGCTCA
***
63925660 ATTTAGCTCGTTTGAGCTCA
1 ATTTAGCTCACATGAGCTCA
63925680 ATTTAGCT
1 ATTTAGCT
63925688 TACTTTAGCT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.25, C:0.19, G:0.17, T:0.40
Consensus pattern (20 bp):
ATTTAGCTCACATGAGCTCA
Found at i:63925679 original size:30 final size:30
Alignment explanation
Indices: 63925636--63925707 Score: 94
Period size: 30 Copynumber: 2.4 Consensus size: 30
63925626 TTTTTCCCAA
63925636 CTCGATTT-AGCTCACA-TGAGCTTAATTTAG
1 CTCG-TTTGAGCTCA-ATTGAGCTTAATTTAG
* *
63925666 CTCGTTTGAGCTCAATTTAGCTTACTTTAG
1 CTCGTTTGAGCTCAATTGAGCTTAATTTAG
63925696 CTCGTTTGAGCT
1 CTCGTTTGAGCT
63925708 TGGCTTAAGT
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
29 4 0.11
30 34 0.89
ACGTcount: A:0.21, C:0.21, G:0.18, T:0.40
Consensus pattern (30 bp):
CTCGTTTGAGCTCAATTGAGCTTAATTTAG
Found at i:63927148 original size:44 final size:42
Alignment explanation
Indices: 63927096--63927216 Score: 145
Period size: 44 Copynumber: 2.8 Consensus size: 42
63927086 GCGTTTTGTG
*
63927096 ATTTCGTGTAAGACCATGTCTGGGACATTGGCATCAACT-TCTG
1 ATTTCGTGTAAGACCATGTCTGGGACATTGGCATC--CTATCTA
* * *
63927139 TTTTACGTGTAAGACCATGTCTGGGACATCGGCATCGTATCTA
1 ATTT-CGTGTAAGACCATGTCTGGGACATTGGCATCCTATCTA
* * *
63927182 ATTTCGTGTAAGACCCTGTCTAGGACAGTGGCATC
1 ATTTCGTGTAAGACCATGTCTGGGACATTGGCATC
63927217 GATGTTTGAT
Statistics
Matches: 67, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
42 28 0.42
43 9 0.13
44 30 0.45
ACGTcount: A:0.23, C:0.21, G:0.24, T:0.31
Consensus pattern (42 bp):
ATTTCGTGTAAGACCATGTCTGGGACATTGGCATCCTATCTA
Found at i:63929028 original size:42 final size:43
Alignment explanation
Indices: 63928949--63929085 Score: 120
Period size: 43 Copynumber: 3.2 Consensus size: 43
63928939 TCCTTGACGT
* **
63928949 GGTCTTACATGTAATTCAATATCGATGCCTCTCTCCCAGACAG
1 GGTCTTACATGTAAATCAATATCGATGCCGATCTCCCAGACAG
* *
63928992 GGTCTTACATG-AAATCAGATAT-GATGCCGATGTCCCAGACAT
1 GGTCTTACATGTAAATCA-ATATCGATGCCGATCTCCCAGACAG
* * * * * *
63929034 GGTCTTATACGTAAAT--ATCAGTCGAGGCCTATGTCCCAGACAC
1 GGTCTTACATGTAAATCAAT-A-TCGATGCCGATCTCCCAGACAG
63929077 GGTCTTACA
1 GGTCTTACA
63929086 CGATATCTCA
Statistics
Matches: 78, Mismatches: 11, Indels: 10
0.79 0.11 0.10
Matches are distributed among these distances:
40 2 0.03
41 1 0.01
42 31 0.40
43 44 0.56
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.28
Consensus pattern (43 bp):
GGTCTTACATGTAAATCAATATCGATGCCGATCTCCCAGACAG
Found at i:63929461 original size:10 final size:10
Alignment explanation
Indices: 63929448--63929514 Score: 71
Period size: 10 Copynumber: 6.5 Consensus size: 10
63929438 AGCTCACTTG
63929448 AGCTCGTTTT
1 AGCTCGTTTT
*
63929458 AGCTCGTTTG
1 AGCTCGTTTT
*
63929468 AGCTCGAATTT
1 AGCTCG-TTTT
*
63929479 AGCTCGTTTG
1 AGCTCGTTTT
*
63929489 AGCTCGAATTT
1 AGCTCG-TTTT
*
63929500 AGCTCGTTTC
1 AGCTCGTTTT
63929510 AGCTC
1 AGCTC
63929515 ATTCCTTTTT
Statistics
Matches: 46, Mismatches: 9, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
10 30 0.65
11 16 0.35
ACGTcount: A:0.16, C:0.22, G:0.22, T:0.39
Consensus pattern (10 bp):
AGCTCGTTTT
Found at i:63929481 original size:21 final size:21
Alignment explanation
Indices: 63929445--63929514 Score: 115
Period size: 21 Copynumber: 3.4 Consensus size: 21
63929435 ATCAGCTCAC
*
63929445 TTGAGCTCG-TTTTAGCTCGT
1 TTGAGCTCGAATTTAGCTCGT
63929465 TTGAGCTCGAATTTAGCTCGT
1 TTGAGCTCGAATTTAGCTCGT
63929486 TTGAGCTCGAATTTAGCTCGT
1 TTGAGCTCGAATTTAGCTCGT
*
63929507 TTCAGCTC
1 TTGAGCTC
63929515 ATTCCTTTTT
Statistics
Matches: 47, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
20 9 0.19
21 38 0.81
ACGTcount: A:0.16, C:0.21, G:0.23, T:0.40
Consensus pattern (21 bp):
TTGAGCTCGAATTTAGCTCGT
Found at i:63929756 original size:13 final size:13
Alignment explanation
Indices: 63929738--63929766 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
63929728 AATAGTTATG
63929738 TGTTATTTAATTA
1 TGTTATTTAATTA
63929751 TGTTATTTAATTA
1 TGTTATTTAATTA
63929764 TGT
1 TGT
63929767 AGGTTAGCCG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.28, C:0.00, G:0.10, T:0.62
Consensus pattern (13 bp):
TGTTATTTAATTA
Found at i:63935793 original size:32 final size:32
Alignment explanation
Indices: 63935754--63935818 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
63935744 TTTGCCTAAT
63935754 TCTTCAGCTTTACAAGCTCGCTCAACGAGCAC
1 TCTTCAGCTTTACAAGCTCGCTCAACGAGCAC
63935786 TCTTCAGCTTTACAAGCTCGCTCAACGAGCAC
1 TCTTCAGCTTTACAAGCTCGCTCAACGAGCAC
63935818 T
1 T
63935819 ACCATTTTTT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.25, C:0.34, G:0.15, T:0.26
Consensus pattern (32 bp):
TCTTCAGCTTTACAAGCTCGCTCAACGAGCAC
Found at i:63936064 original size:17 final size:17
Alignment explanation
Indices: 63936042--63936075 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
63936032 CTGGAATTCG
63936042 GCTTGGAAGAAATCCCA
1 GCTTGGAAGAAATCCCA
63936059 GCTTGGAAGAAATCCCA
1 GCTTGGAAGAAATCCCA
63936076 AGTAACTCGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.35, C:0.24, G:0.24, T:0.18
Consensus pattern (17 bp):
GCTTGGAAGAAATCCCA
Found at i:63945205 original size:12 final size:12
Alignment explanation
Indices: 63945190--63945220 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
63945180 TTCTTTTTGC
63945190 TTTTCAAAGGCT
1 TTTTCAAAGGCT
63945202 TTTTCAAAGGCT
1 TTTTCAAAGGCT
63945214 TTTTCAA
1 TTTTCAA
63945221 GTTCTCTCAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.26, C:0.16, G:0.13, T:0.45
Consensus pattern (12 bp):
TTTTCAAAGGCT
Found at i:63945319 original size:14 final size:14
Alignment explanation
Indices: 63945268--63945308 Score: 55
Period size: 16 Copynumber: 2.8 Consensus size: 14
63945258 CTCTTGCCTC
*
63945268 TCTTTTCTTTTTATT
1 TCTTTTCTTTTT-CT
63945283 TCATTTTCTTTTTCT
1 TC-TTTTCTTTTTCT
63945298 TCTTTTCTTTT
1 TCTTTTCTTTT
63945309 CTTTGTTTTC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
14 9 0.38
15 5 0.21
16 10 0.42
ACGTcount: A:0.05, C:0.17, G:0.00, T:0.78
Consensus pattern (14 bp):
TCTTTTCTTTTTCT
Found at i:63946245 original size:11 final size:11
Alignment explanation
Indices: 63946229--63946294 Score: 96
Period size: 12 Copynumber: 5.7 Consensus size: 11
63946219 CATAAATCAC
63946229 TTTTTTTTGAA
1 TTTTTTTTGAA
63946240 TTTTTTTTGAA
1 TTTTTTTTGAA
*
63946251 TTTTTTTTCGAT
1 TTTTTTTT-GAA
63946263 TTTTTTTTGAA
1 TTTTTTTTGAA
63946274 TTTTTTTTTCGAA
1 -TTTTTTTT-GAA
63946287 TTTTTTTT
1 TTTTTTTT
63946295 TCAAACTTGT
Statistics
Matches: 50, Mismatches: 2, Indels: 5
0.88 0.04 0.09
Matches are distributed among these distances:
11 21 0.42
12 26 0.52
13 3 0.06
ACGTcount: A:0.14, C:0.03, G:0.08, T:0.76
Consensus pattern (11 bp):
TTTTTTTTGAA
Found at i:63946246 original size:12 final size:12
Alignment explanation
Indices: 63946229--63946295 Score: 102
Period size: 11 Copynumber: 5.7 Consensus size: 12
63946219 CATAAATCAC
63946229 TTTTTTTTGAA-
1 TTTTTTTTGAAT
63946240 TTTTTTTTGAAT
1 TTTTTTTTGAAT
*
63946252 TTTTTTTCG-AT
1 TTTTTTTTGAAT
63946263 TTTTTTTTGAAT
1 TTTTTTTTGAAT
63946275 TTTTTTTTCGAAT
1 TTTTTTTT-GAAT
63946288 TTTTTTTT
1 TTTTTTTT
63946296 CAAACTTGTA
Statistics
Matches: 51, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
11 21 0.41
12 18 0.35
13 12 0.24
ACGTcount: A:0.13, C:0.03, G:0.07, T:0.76
Consensus pattern (12 bp):
TTTTTTTTGAAT
Found at i:63946266 original size:23 final size:24
Alignment explanation
Indices: 63946229--63946295 Score: 102
Period size: 23 Copynumber: 2.8 Consensus size: 24
63946219 CATAAATCAC
*
63946229 TTTTTTTT-GAATTTTTTTTGAA-
1 TTTTTTTTCGATTTTTTTTTGAAT
63946251 TTTTTTTTCGATTTTTTTTTGAAT
1 TTTTTTTTCGATTTTTTTTTGAAT
63946275 TTTTTTTTCGAATTTTTTTTT
1 TTTTTTTTCG-ATTTTTTTTT
63946296 CAAACTTGTA
Statistics
Matches: 41, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
22 8 0.20
23 13 0.32
24 10 0.24
25 10 0.24
ACGTcount: A:0.13, C:0.03, G:0.07, T:0.76
Consensus pattern (24 bp):
TTTTTTTTCGATTTTTTTTTGAAT
Found at i:63952249 original size:27 final size:28
Alignment explanation
Indices: 63952219--63952369 Score: 123
Period size: 27 Copynumber: 5.5 Consensus size: 28
63952209 ATATCGAGTC
* *
63952219 CGCACACTCAGTGCTATATAATCA-ACT
1 CGCACACTTAGTGCTACATAATCAGACT
* *
63952246 CGCACACTTAGTGCTACATAGTTAGACT
1 CGCACACTTAGTGCTACATAATCAGACT
** ** *
63952274 CGCACACTTAGTGCCGCATGGTCA-ATT
1 CGCACACTTAGTGCTACATAATCAGACT
* **
63952301 CGCACACTTAGTGC-ATCATATTCA-TTT
1 CGCACACTTAGTGCTA-CATAATCAGACT
* * *
63952328 CGCACACTTAGTGCAACATAGTC-GAAT
1 CGCACACTTAGTGCTACATAATCAGACT
63952355 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
63952370 GTACAATTTA
Statistics
Matches: 103, Mismatches: 17, Indels: 8
0.80 0.13 0.06
Matches are distributed among these distances:
27 79 0.77
28 24 0.23
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.28
Consensus pattern (28 bp):
CGCACACTTAGTGCTACATAATCAGACT
Found at i:63952331 original size:82 final size:81
Alignment explanation
Indices: 63952219--63952368 Score: 212
Period size: 82 Copynumber: 1.8 Consensus size: 81
63952209 ATATCGAGTC
* *
63952219 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAGTTAGACTCGCACACTTA
1 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCAACATAG-TAGAATCGCACACTTA
63952284 GTGCCGCATGGTCAATT
65 GTGCCGCATGGTCAATT
* * ** *
63952301 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCACACTTA
1 CGCACACTCAGTGCTAT-ATAATCAACTCGCACACTTAGTGCAACATAGTAGAATCGCACACTTA
63952365 GTGC
65 GTGC
63952369 TGTACAATTT
Statistics
Matches: 60, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
81 20 0.33
82 40 0.67
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.27
Consensus pattern (81 bp):
CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCAACATAGTAGAATCGCACACTTAG
TGCCGCATGGTCAATT
Found at i:63960269 original size:27 final size:28
Alignment explanation
Indices: 63960239--63960389 Score: 123
Period size: 27 Copynumber: 5.5 Consensus size: 28
63960229 ATATCGAGTC
* *
63960239 CGCACACTCAGTGCTATATAATCA-ACT
1 CGCACACTTAGTGCTACATAATCAGACT
* *
63960266 CGCACACTTAGTGCTACATAGTTAGACT
1 CGCACACTTAGTGCTACATAATCAGACT
** ** *
63960294 CGCACACTTAGTGCCGCATGGTCA-ATT
1 CGCACACTTAGTGCTACATAATCAGACT
* **
63960321 CGCACACTTAGTGC-ATCATATTCA-TTT
1 CGCACACTTAGTGCTA-CATAATCAGACT
* * *
63960348 CGCACACTTAGTGCAACATAGTC-GAAT
1 CGCACACTTAGTGCTACATAATCAGACT
63960375 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
63960390 GTACAATTTA
Statistics
Matches: 103, Mismatches: 17, Indels: 8
0.80 0.13 0.06
Matches are distributed among these distances:
27 79 0.77
28 24 0.23
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.28
Consensus pattern (28 bp):
CGCACACTTAGTGCTACATAATCAGACT
Found at i:63973501 original size:30 final size:30
Alignment explanation
Indices: 63973467--63973563 Score: 90
Period size: 30 Copynumber: 3.2 Consensus size: 30
63973457 TAAACTAAAA
63973467 TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
1 TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
* * * * * *
63973497 TGAGCTGAGGC-TAAACTCCTAAGCTGAAGT
1 TGAGCT-AAGCTTTAGCTCGTGAGCTAAAGT
* *
63973527 TGAGCTAAGGTTTAGCTCGTGAGTTGAAAG-
1 TGAGCTAAGCTTTAGCTCGTGAGCT-AAAGT
63973557 TGAGCTA
1 TGAGCTA
63973564 GGAGTGAGCT
Statistics
Matches: 50, Mismatches: 14, Indels: 6
0.71 0.20 0.09
Matches are distributed among these distances:
29 2 0.04
30 42 0.84
31 6 0.12
ACGTcount: A:0.28, C:0.15, G:0.29, T:0.28
Consensus pattern (30 bp):
TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
Found at i:63975745 original size:30 final size:30
Alignment explanation
Indices: 63975674--63975756 Score: 89
Period size: 30 Copynumber: 2.7 Consensus size: 30
63975664 CTTTTGTTTC
* *
63975674 AATTTCTTTTTCATCTTCTTTTTCACTCTCA
1 AATTTCTTTTTCTTC-TCTTTTTCAATCTCA
63975705 AATTTC-TTTTCGTTCTCTTTTTCAATCTC-
1 AATTTCTTTTTC-TTCTCTTTTTCAATCTCA
* *
63975734 ATTTTCTTTTTCATTTTCTTTTT
1 AATTTCTTTTTC-TTCTCTTTTT
63975757 GCTTTTCAAA
Statistics
Matches: 45, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
29 5 0.11
30 32 0.71
31 8 0.18
ACGTcount: A:0.13, C:0.22, G:0.01, T:0.64
Consensus pattern (30 bp):
AATTTCTTTTTCTTCTCTTTTTCAATCTCA
Found at i:63975756 original size:18 final size:18
Alignment explanation
Indices: 63975707--63975762 Score: 51
Period size: 18 Copynumber: 3.1 Consensus size: 18
63975697 CACTCTCAAA
* *
63975707 TTTC-TTTTCGTTCTCTT
1 TTTCATTTTCATTTTCTT
* *
63975724 TTTCAATCTCATTTTCTT
1 TTTCATTTTCATTTTCTT
*
63975742 TTTCATTTTCTTTTTGCTT
1 TTTCATTTTCATTTT-CTT
63975761 TT
1 TT
63975763 CAAAGGCTTT
Statistics
Matches: 30, Mismatches: 7, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
17 4 0.13
18 21 0.70
19 5 0.17
ACGTcount: A:0.07, C:0.20, G:0.04, T:0.70
Consensus pattern (18 bp):
TTTCATTTTCATTTTCTT
Found at i:63975763 original size:12 final size:12
Alignment explanation
Indices: 63975732--63975756 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
63975722 TTTTTCAATC
63975732 TCATTTTCTTTT
1 TCATTTTCTTTT
63975744 TCATTTTCTTTT
1 TCATTTTCTTTT
63975756 T
1 T
63975757 GCTTTTCAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.16, G:0.00, T:0.76
Consensus pattern (12 bp):
TCATTTTCTTTT
Found at i:63975835 original size:5 final size:5
Alignment explanation
Indices: 63975825--63975879 Score: 53
Period size: 5 Copynumber: 11.0 Consensus size: 5
63975815 CTCTTGCCTC
*
63975825 TCTTT TCTTT T-TATT T-TTT TCTTT T-TCT TCTTT TGCTTTT TCTTT
1 TCTTT TCTTT TCT-TT TCTTT TCTTT TCTTT TCTTT T-C-TTT TCTTT
63975870 TCTTT TCTTT
1 TCTTT TCTTT
63975880 GTTTTCTCTT
Statistics
Matches: 43, Mismatches: 2, Indels: 10
0.78 0.04 0.18
Matches are distributed among these distances:
4 7 0.16
5 30 0.70
6 2 0.05
7 4 0.09
ACGTcount: A:0.02, C:0.16, G:0.02, T:0.80
Consensus pattern (5 bp):
TCTTT
Found at i:63975844 original size:14 final size:14
Alignment explanation
Indices: 63975827--63975870 Score: 61
Period size: 14 Copynumber: 3.1 Consensus size: 14
63975817 CTTGCCTCTC
*
63975827 TTTTCTTTTTATTT
1 TTTTCTTTTTCTTT
63975841 TTTTCTTTTTCTTCT
1 TTTTCTTTTTCTT-T
*
63975856 TTTGCTTTTTCTTT
1 TTTTCTTTTTCTTT
63975870 T
1 T
63975871 CTTTTCTTTG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
14 14 0.52
15 13 0.48
ACGTcount: A:0.02, C:0.14, G:0.02, T:0.82
Consensus pattern (14 bp):
TTTTCTTTTTCTTT
Found at i:63975852 original size:20 final size:19
Alignment explanation
Indices: 63975825--63975875 Score: 59
Period size: 20 Copynumber: 2.6 Consensus size: 19
63975815 CTCTTGCCTC
*
63975825 TCTTTTCTTTTTAT-TTTTT
1 TCTTTTCTTTTT-TGCTTTT
63975844 TCTTTTTCTTCTTTTGCTTTT
1 TC-TTTTCTT-TTTTGCTTTT
63975865 TCTTTTCTTTT
1 TCTTTTCTTTT
63975876 CTTTGTTTTC
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
19 4 0.14
20 15 0.54
21 9 0.32
ACGTcount: A:0.02, C:0.16, G:0.02, T:0.80
Consensus pattern (19 bp):
TCTTTTCTTTTTTGCTTTT
Found at i:63975886 original size:14 final size:14
Alignment explanation
Indices: 63975825--63975879 Score: 56
Period size: 14 Copynumber: 3.7 Consensus size: 14
63975815 CTCTTGCCTC
63975825 TCTTTTCTTTTTAT
1 TCTTTTCTTTTTAT
* *
63975839 TTTTTTCTTTTTCT
1 TCTTTTCTTTTTAT
*
63975853 TCTTTTGCTTTTTCTTT
1 TCTTTT-C-TTTT-TAT
63975870 TCTTTTCTTT
1 TCTTTTCTTT
63975880 GTTTTCTCTT
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
14 17 0.50
15 4 0.12
16 5 0.15
17 8 0.24
ACGTcount: A:0.02, C:0.16, G:0.02, T:0.80
Consensus pattern (14 bp):
TCTTTTCTTTTTAT
Found at i:63978465 original size:30 final size:30
Alignment explanation
Indices: 63978431--63978527 Score: 90
Period size: 30 Copynumber: 3.2 Consensus size: 30
63978421 TAAACTAAAA
63978431 TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
1 TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
* * * * * *
63978461 TGAGCTGAGGC-TAAACTCCTAAGCTGAAGT
1 TGAGCT-AAGCTTTAGCTCGTGAGCTAAAGT
* *
63978491 TGAGCTAAGGTTTAGCTCGTGAGTTGAAAG-
1 TGAGCTAAGCTTTAGCTCGTGAGCT-AAAGT
63978521 TGAGCTA
1 TGAGCTA
63978528 GGAGTGAGCT
Statistics
Matches: 50, Mismatches: 14, Indels: 6
0.71 0.20 0.09
Matches are distributed among these distances:
29 2 0.04
30 42 0.84
31 6 0.12
ACGTcount: A:0.28, C:0.15, G:0.29, T:0.28
Consensus pattern (30 bp):
TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
Found at i:63980226 original size:12 final size:13
Alignment explanation
Indices: 63980204--63980229 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
63980194 AAATCGTAGC
63980204 TTCGAAAAAAAAA
1 TTCGAAAAAAAAA
63980217 TTCGAAAAAAAAA
1 TTCGAAAAAAAAA
63980230 AGAAGGAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.69, C:0.08, G:0.08, T:0.15
Consensus pattern (13 bp):
TTCGAAAAAAAAA
Found at i:63982539 original size:17 final size:18
Alignment explanation
Indices: 63982500--63982541 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
63982490 AAGAAGAAAA
63982500 ACAAAA-AGATGAGTGAT
1 ACAAAAGAGATGAGTGAT
*
63982517 AAAAAAGAGA-GAGTGAT
1 ACAAAAGAGATGAGTGAT
*
63982534 TCAAAAGA
1 ACAAAAGA
63982542 AAAAGAAACG
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
17 18 0.86
18 3 0.14
ACGTcount: A:0.57, C:0.05, G:0.24, T:0.14
Consensus pattern (18 bp):
ACAAAAGAGATGAGTGAT
Found at i:63988886 original size:64 final size:64
Alignment explanation
Indices: 63988805--63988984 Score: 168
Period size: 67 Copynumber: 2.8 Consensus size: 64
63988795 AGACATTATG
* * *
63988805 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGATAGCTATGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAAAGCTATGAGATAA
* * * * * * *
63988869 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAATAAAGCTATGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAAAGCTATGAGAT
63988934 AA
63 AA
* * * *
63988936 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGA
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGA
63988985 GAGCCAAAAT
Statistics
Matches: 91, Mismatches: 20, Indels: 11
0.75 0.16 0.09
Matches are distributed among these distances:
62 1 0.01
63 14 0.15
64 21 0.23
65 8 0.09
66 16 0.18
67 29 0.32
68 2 0.02
ACGTcount: A:0.31, C:0.16, G:0.28, T:0.26
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAAAGCTATGAGATAA
Found at i:63996976 original size:14 final size:14
Alignment explanation
Indices: 63996957--63996992 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
63996947 ATCACTTTTC
63996957 TTTTTTTTC-GATT
1 TTTTTTTTCGGATT
*
63996970 TTTTTTTTCGGAAT
1 TTTTTTTTCGGATT
63996984 TTTTTTTTC
1 TTTTTTTTC
63996993 AAACTTGTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
13 9 0.43
14 12 0.57
ACGTcount: A:0.08, C:0.08, G:0.08, T:0.75
Consensus pattern (14 bp):
TTTTTTTTCGGATT
Found at i:63999192 original size:14 final size:14
Alignment explanation
Indices: 63999145--63999192 Score: 60
Period size: 14 Copynumber: 3.4 Consensus size: 14
63999135 GTACGAATGG
*
63999145 AATGGTAGGAACGA
1 AATGGTAGGAACAA
*
63999159 AAGGGTAGGAACAA
1 AATGGTAGGAACAA
*
63999173 AATGGTATGAACAA
1 AATGGTAGGAACAA
*
63999187 ATTGGT
1 AATGGT
63999193 CGGTTTAGGT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 29 1.00
ACGTcount: A:0.44, C:0.06, G:0.31, T:0.19
Consensus pattern (14 bp):
AATGGTAGGAACAA
Found at i:64000837 original size:30 final size:31
Alignment explanation
Indices: 64000803--64000898 Score: 99
Period size: 30 Copynumber: 3.2 Consensus size: 31
64000793 GCTCACTCCT
*
64000803 AGCTC-ACTTTCAACTCACGAGCTAAACCTC
1 AGCTCAACTTTCAGCTCACGAGCTAAACCTC
* * * * *
64000833 AGCTCAAC-TTCAGCTTAGGAGTTTAGCCTC
1 AGCTCAACTTTCAGCTCACGAGCTAAACCTC
* *
64000863 AGCTCAACTTT-AGCTCACGAGCTAAAGCTT
1 AGCTCAACTTTCAGCTCACGAGCTAAACCTC
64000893 AGCTCA
1 AGCTCA
64000899 TTTTAGTTTA
Statistics
Matches: 51, Mismatches: 13, Indels: 4
0.75 0.19 0.06
Matches are distributed among these distances:
30 47 0.92
31 4 0.08
ACGTcount: A:0.28, C:0.30, G:0.16, T:0.26
Consensus pattern (31 bp):
AGCTCAACTTTCAGCTCACGAGCTAAACCTC
Found at i:64001484 original size:30 final size:30
Alignment explanation
Indices: 64001448--64001510 Score: 76
Period size: 30 Copynumber: 2.1 Consensus size: 30
64001438 GCAAGCTAAT
*
64001448 TTCAAC-TCAATTCCAGCTCCCTT-AGCTCAA
1 TTCAACTTCAA-T-CAGCTCACTTGAGCTCAA
*
64001478 TTCAACTTTAATCAGCTCACTTGAGCTCAA
1 TTCAACTTCAATCAGCTCACTTGAGCTCAA
64001508 TTC
1 TTC
64001511 CACCTATTTG
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
29 9 0.31
30 17 0.59
31 3 0.10
ACGTcount: A:0.27, C:0.32, G:0.08, T:0.33
Consensus pattern (30 bp):
TTCAACTTCAATCAGCTCACTTGAGCTCAA
Found at i:64010675 original size:11 final size:12
Alignment explanation
Indices: 64010643--64010675 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
64010633 GAGCTGTAGC
64010643 AAACTTAATTAT
1 AAACTTAATTAT
*
64010655 AAACTAAATTA-
1 AAACTTAATTAT
64010666 AAACTTAATT
1 AAACTTAATT
64010676 TATTAGAATG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
11 9 0.47
12 10 0.53
ACGTcount: A:0.55, C:0.09, G:0.00, T:0.36
Consensus pattern (12 bp):
AAACTTAATTAT
Found at i:64018400 original size:11 final size:11
Alignment explanation
Indices: 64018384--64018413 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
64018374 AAAGAAATTG
64018384 AAAGAAAACAA
1 AAAGAAAACAA
*
64018395 AAAGAAAACGA
1 AAAGAAAACAA
64018406 AAAGAAAA
1 AAAGAAAA
64018414 AGAAATTGCA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.80, C:0.07, G:0.13, T:0.00
Consensus pattern (11 bp):
AAAGAAAACAA
Found at i:64018407 original size:6 final size:6
Alignment explanation
Indices: 64018384--64018475 Score: 53
Period size: 6 Copynumber: 15.3 Consensus size: 6
64018374 AAAGAAATTG
* * ** *
64018384 AAAG-A AAACAA AAAGAA AACG-A AAAGAA AAAGAA ATTGCA AAAGAA
1 AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA
** ** * *
64018430 AAAGAA ATCGAA AAAGTG AGAGAA AAAGAA AATGAAGA AAAGAA AA
1 AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA AAAG-A-A AAAGAA AA
64018476 TTGAAAAAAG
Statistics
Matches: 61, Mismatches: 22, Indels: 7
0.68 0.24 0.08
Matches are distributed among these distances:
5 7 0.11
6 48 0.79
7 2 0.03
8 4 0.07
ACGTcount: A:0.72, C:0.04, G:0.18, T:0.05
Consensus pattern (6 bp):
AAAGAA
Found at i:64018445 original size:18 final size:17
Alignment explanation
Indices: 64018387--64018443 Score: 78
Period size: 17 Copynumber: 3.3 Consensus size: 17
64018377 GAAATTGAAA
* *
64018387 GAAAACAAAAAGAAAAC
1 GAAAAGAAAAAGAAATC
*
64018404 GAAAAGAAAAAGAAATT
1 GAAAAGAAAAAGAAATC
64018421 GCAAAAGAAAAAGAAATC
1 G-AAAAGAAAAAGAAATC
64018439 GAAAA
1 GAAAA
64018444 AGTGAGAGAA
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
17 19 0.54
18 16 0.46
ACGTcount: A:0.72, C:0.07, G:0.16, T:0.05
Consensus pattern (17 bp):
GAAAAGAAAAAGAAATC
Found at i:64018472 original size:14 final size:14
Alignment explanation
Indices: 64018452--64018487 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
64018442 AAAGTGAGAG
64018452 AAAAAGAAAA-TGA
1 AAAAAGAAAATTGA
64018465 AGAAAAGAAAATTGA
1 A-AAAAGAAAATTGA
64018480 AAAAAGAA
1 AAAAAGAA
64018488 TTGAGAATGA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 1 0.05
14 16 0.76
15 4 0.19
ACGTcount: A:0.75, C:0.00, G:0.17, T:0.08
Consensus pattern (14 bp):
AAAAAGAAAATTGA
Found at i:64018515 original size:16 final size:18
Alignment explanation
Indices: 64018478--64018517 Score: 57
Period size: 16 Copynumber: 2.3 Consensus size: 18
64018468 AAAGAAAATT
*
64018478 GAAAAAAGAATTGAGAAT
1 GAAAAAAGAATTGAGAAA
64018496 GAAAAAA-AATTG-GAAA
1 GAAAAAAGAATTGAGAAA
64018512 GAAAAA
1 GAAAAA
64018518 GCGAAAAAAG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 9 0.43
17 5 0.24
18 7 0.33
ACGTcount: A:0.68, C:0.00, G:0.20, T:0.12
Consensus pattern (18 bp):
GAAAAAAGAATTGAGAAA
Found at i:64025048 original size:13 final size:13
Alignment explanation
Indices: 64025032--64025063 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
64025022 TTTTTTTCAA
64025032 TTTTTTT-GATTT
1 TTTTTTTCGATTT
64025044 TTTTTTTCGATTT
1 TTTTTTTCGATTT
64025057 TTTTTTT
1 TTTTTTT
64025064 GAATCTACAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 7 0.37
13 12 0.63
ACGTcount: A:0.06, C:0.03, G:0.06, T:0.84
Consensus pattern (13 bp):
TTTTTTTCGATTT
Found at i:64025062 original size:12 final size:12
Alignment explanation
Indices: 64025007--64025062 Score: 55
Period size: 12 Copynumber: 4.8 Consensus size: 12
64024997 ACCGTATGCA
*
64025007 ATTTTTTTTTCA
1 ATTTTTTTTTCG
*
64025019 AATTTTTTTTC-
1 ATTTTTTTTTCG
*
64025030 A-ATTTTTTT-G
1 ATTTTTTTTTCG
64025040 ATTTTTTTTTTCG
1 A-TTTTTTTTTCG
64025053 ATTTTTTTTT
1 ATTTTTTTTT
64025063 TGAATCTACA
Statistics
Matches: 37, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
10 8 0.22
11 1 0.03
12 26 0.70
13 2 0.05
ACGTcount: A:0.14, C:0.05, G:0.04, T:0.77
Consensus pattern (12 bp):
ATTTTTTTTTCG
Found at i:64026980 original size:29 final size:28
Alignment explanation
Indices: 64026944--64027021 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
64026934 TCATGAGATT
64026944 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
*
64026974 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
64027001 TGGCACTAAGTGTGCGTGGTT
1 -GGCACTAAGTGTGCG-GGTT
64027022 GATTATTAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 5 0.12
29 35 0.81
30 3 0.07
ACGTcount: A:0.26, C:0.14, G:0.31, T:0.29
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:64027239 original size:174 final size:174
Alignment explanation
Indices: 64026974--64027301 Score: 602
Period size: 174 Copynumber: 1.9 Consensus size: 174
64026964 AAATTGTACA
*
64026974 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGTGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
* *
64027039 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACCTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACCTTACCGAGTCAA
64027104 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
* *
64027148 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
*
64027213 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACCTTACCGAGTCAA
64027278 TTTTGGACAGCGGAAAAGGTAAGT
131 TTTTGGACAGCGGAAAAGGTAAGT
64027302 ACCTTGAGTT
Statistics
Matches: 148, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
174 148 1.00
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACCTTACCGAGTCAA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:64031635 original size:20 final size:20
Alignment explanation
Indices: 64031612--64031665 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 20
64031602 AGTTTTTCCC
*
64031612 AGCTCGATTTAGCTCACATG
1 AGCTCAATTTAGCTCACATG
* ***
64031632 AGCTTAATTTAGCTCGTTTG
1 AGCTCAATTTAGCTCACATG
64031652 AGCTCAATTTAGCT
1 AGCTCAATTTAGCT
64031666 TACTTTAGCT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.24, C:0.20, G:0.19, T:0.37
Consensus pattern (20 bp):
AGCTCAATTTAGCTCACATG
Found at i:64031647 original size:30 final size:30
Alignment explanation
Indices: 64031612--64031685 Score: 98
Period size: 30 Copynumber: 2.5 Consensus size: 30
64031602 AGTTTTTCCC
64031612 AGCTCGATTT-AGCTCACA-TGAGCTTAATTT
1 AGCTCG-TTTGAGCTCA-ATTGAGCTTAATTT
* *
64031642 AGCTCGTTTGAGCTCAATTTAGCTTACTTT
1 AGCTCGTTTGAGCTCAATTGAGCTTAATTT
64031672 AGCTCGTTTGAGCT
1 AGCTCGTTTGAGCT
64031686 TGGCTTAAGT
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
29 4 0.10
30 36 0.90
ACGTcount: A:0.22, C:0.20, G:0.19, T:0.39
Consensus pattern (30 bp):
AGCTCGTTTGAGCTCAATTGAGCTTAATTT
Found at i:64031675 original size:20 final size:20
Alignment explanation
Indices: 64031612--64031676 Score: 53
Period size: 20 Copynumber: 3.2 Consensus size: 20
64031602 AGTTTTTCCC
* * * *
64031612 AGCTCGATTTAGCTCACATG
1 AGCTCAATTTAGCTTACTTT
*
64031632 AGCTTAATTTAGC-T-CGTTT
1 AGCTCAATTTAGCTTAC-TTT
64031651 GAGCTCAATTTAGCTTACTTT
1 -AGCTCAATTTAGCTTACTTT
64031672 AGCTC
1 AGCTC
64031677 GTTTGAGCTT
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
18 1 0.03
19 1 0.03
20 28 0.80
21 4 0.11
22 1 0.03
ACGTcount: A:0.23, C:0.22, G:0.17, T:0.38
Consensus pattern (20 bp):
AGCTCAATTTAGCTTACTTT
Found at i:64033320 original size:11 final size:11
Alignment explanation
Indices: 64033270--64033334 Score: 51
Period size: 11 Copynumber: 5.5 Consensus size: 11
64033260 TTGGAGTAAC
64033270 AAAAAAA-TCA
1 AAAAAAATTCA
64033280 AAAAAAATTCGAA
1 AAAAAAATTC--A
*
64033293 AAAAAATTGATTGA
1 AAAAAA---ATTCA
64033307 AAAAAAATTCA
1 AAAAAAATTCA
* *
64033318 AAAAAAAGTGA
1 AAAAAAATTCA
64033329 AAAAAA
1 AAAAAA
64033335 TCGAGCAAAA
Statistics
Matches: 45, Mismatches: 4, Indels: 11
0.75 0.07 0.18
Matches are distributed among these distances:
10 7 0.16
11 21 0.47
13 7 0.16
14 7 0.16
16 3 0.07
ACGTcount: A:0.72, C:0.05, G:0.08, T:0.15
Consensus pattern (11 bp):
AAAAAAATTCA
Found at i:64034424 original size:21 final size:22
Alignment explanation
Indices: 64034398--64034440 Score: 70
Period size: 21 Copynumber: 2.0 Consensus size: 22
64034388 AAAGAGATTG
64034398 AAAAAGAAATTG-AAAGAAAAC
1 AAAAAGAAATTGAAAAGAAAAC
64034419 AAAAAGAAATTGCAAAAGAAAA
1 AAAAAGAAATTG-AAAAGAAAA
64034441 AGAAATCAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
21 12 0.60
23 8 0.40
ACGTcount: A:0.72, C:0.05, G:0.14, T:0.09
Consensus pattern (22 bp):
AAAAAGAAATTGAAAAGAAAAC
Found at i:64034479 original size:14 final size:13
Alignment explanation
Indices: 64034460--64034497 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 13
64034450 AAAAGTGAGA
64034460 GAAAAAGAAAA-T
1 GAAAAAGAAAATT
64034472 GAAGAAAAGAAAATT
1 G-A-AAAAGAAAATT
64034487 GAAAAAGAAAA
1 GAAAAAGAAAA
64034498 AGCGAAAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
12 1 0.04
13 10 0.43
14 10 0.43
15 2 0.09
ACGTcount: A:0.74, C:0.00, G:0.18, T:0.08
Consensus pattern (13 bp):
GAAAAAGAAAATT
Found at i:64034511 original size:21 final size:21
Alignment explanation
Indices: 64034461--64034511 Score: 50
Period size: 21 Copynumber: 2.4 Consensus size: 21
64034451 AAAGTGAGAG
*
64034461 AAAAAGAAAATGAAGAAAAGA
1 AAAAAGAAAAAGAAGAAAAGA
** *
64034482 AAATTGAAAAAGAA-AAAGCGA
1 AAAAAGAAAAAGAAGAAA-AGA
64034503 AAAAAGAAA
1 AAAAAGAAA
64034512 TTGAAAGAGA
Statistics
Matches: 23, Mismatches: 6, Indels: 2
0.74 0.19 0.06
Matches are distributed among these distances:
20 3 0.13
21 20 0.87
ACGTcount: A:0.75, C:0.02, G:0.18, T:0.06
Consensus pattern (21 bp):
AAAAAGAAAAAGAAGAAAAGA
Found at i:64034551 original size:33 final size:33
Alignment explanation
Indices: 64034514--64034576 Score: 85
Period size: 33 Copynumber: 1.9 Consensus size: 33
64034504 AAAAGAAATT
64034514 GAAAGAGAG-CT-TGAAAAGAAATCAAGTGAAAAA
1 GAAAGAGAGTCTGT-AAAAGAAA-CAAGTGAAAAA
*
64034547 GAAAGAGAGTCTGTAAAAGAAACGAGTGAA
1 GAAAGAGAGTCTGTAAAAGAAACAAGTGAA
64034577 GTGAGTAATC
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
33 16 0.59
34 10 0.37
35 1 0.04
ACGTcount: A:0.54, C:0.06, G:0.27, T:0.13
Consensus pattern (33 bp):
GAAAGAGAGTCTGTAAAAGAAACAAGTGAAAAA
Found at i:64036376 original size:20 final size:20
Alignment explanation
Indices: 64036353--64036406 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 20
64036343 AGTTTTTCCC
*
64036353 AGCTCGATTTAGCTCACATG
1 AGCTCAATTTAGCTCACATG
* ***
64036373 AGCTTAATTTAGCTCGTTTG
1 AGCTCAATTTAGCTCACATG
64036393 AGCTCAATTTAGCT
1 AGCTCAATTTAGCT
64036407 TACTTTAGCT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.24, C:0.20, G:0.19, T:0.37
Consensus pattern (20 bp):
AGCTCAATTTAGCTCACATG
Found at i:64036388 original size:30 final size:30
Alignment explanation
Indices: 64036353--64036426 Score: 98
Period size: 30 Copynumber: 2.5 Consensus size: 30
64036343 AGTTTTTCCC
64036353 AGCTCGATTT-AGCTCACA-TGAGCTTAATTT
1 AGCTCG-TTTGAGCTCA-ATTGAGCTTAATTT
* *
64036383 AGCTCGTTTGAGCTCAATTTAGCTTACTTT
1 AGCTCGTTTGAGCTCAATTGAGCTTAATTT
64036413 AGCTCGTTTGAGCT
1 AGCTCGTTTGAGCT
64036427 TGGCTTAAGT
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
29 4 0.10
30 36 0.90
ACGTcount: A:0.22, C:0.20, G:0.19, T:0.39
Consensus pattern (30 bp):
AGCTCGTTTGAGCTCAATTGAGCTTAATTT
Found at i:64036416 original size:20 final size:20
Alignment explanation
Indices: 64036353--64036417 Score: 53
Period size: 20 Copynumber: 3.2 Consensus size: 20
64036343 AGTTTTTCCC
* * * *
64036353 AGCTCGATTTAGCTCACATG
1 AGCTCAATTTAGCTTACTTT
*
64036373 AGCTTAATTTAGC-T-CGTTT
1 AGCTCAATTTAGCTTAC-TTT
64036392 GAGCTCAATTTAGCTTACTTT
1 -AGCTCAATTTAGCTTACTTT
64036413 AGCTC
1 AGCTC
64036418 GTTTGAGCTT
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
18 1 0.03
19 1 0.03
20 28 0.80
21 4 0.11
22 1 0.03
ACGTcount: A:0.23, C:0.22, G:0.17, T:0.38
Consensus pattern (20 bp):
AGCTCAATTTAGCTTACTTT
Found at i:64044916 original size:13 final size:13
Alignment explanation
Indices: 64044898--64044946 Score: 55
Period size: 16 Copynumber: 3.6 Consensus size: 13
64044888 AACAAAAAAT
64044898 AAAAAAAAATTCG
1 AAAAAAAAATTCG
*
64044911 AAAAAAAAATTGATTG
1 AAAAAAAAA-T--TCG
64044927 AAAAAAAAATTC-
1 AAAAAAAAATTCG
64044939 AAAAAAAA
1 AAAAAAAA
64044947 GTGAAAAAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 7
0.77 0.05 0.17
Matches are distributed among these distances:
12 8 0.26
13 10 0.32
14 1 0.03
15 1 0.03
16 11 0.35
ACGTcount: A:0.73, C:0.04, G:0.06, T:0.16
Consensus pattern (13 bp):
AAAAAAAAATTCG
Found at i:64047465 original size:10 final size:10
Alignment explanation
Indices: 64047450--64047511 Score: 52
Period size: 10 Copynumber: 5.9 Consensus size: 10
64047440 TTTGAACCGT
*
64047450 TACCAATTCG
1 TACCAATTCA
*
64047460 TACCAAATACCA
1 TACC-AAT-TCA
*
64047472 TACCATTTCA
1 TACCAATTCA
64047482 TACCAATTCCA
1 TACCAATT-CA
* *
64047493 TACCATTTCG
1 TACCAATTCA
64047503 TACCAATTC
1 TACCAATTC
64047512 CCAAATACCA
Statistics
Matches: 41, Mismatches: 8, Indels: 6
0.75 0.15 0.11
Matches are distributed among these distances:
10 22 0.54
11 14 0.34
12 5 0.12
ACGTcount: A:0.34, C:0.32, G:0.03, T:0.31
Consensus pattern (10 bp):
TACCAATTCA
Found at i:64047495 original size:21 final size:21
Alignment explanation
Indices: 64047450--64047512 Score: 90
Period size: 21 Copynumber: 3.0 Consensus size: 21
64047440 TTTGAACCGT
* *
64047450 TACCAATTCGTACCAAATACCA
1 TACCATTTCGTACC-AATTCCA
*
64047472 TACCATTTCATACCAATTCCA
1 TACCATTTCGTACCAATTCCA
64047493 TACCATTTCGTACCAATTCC
1 TACCATTTCGTACCAATTCC
64047513 CAAATACCAA
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
21 25 0.68
22 12 0.32
ACGTcount: A:0.33, C:0.33, G:0.03, T:0.30
Consensus pattern (21 bp):
TACCATTTCGTACCAATTCCA
Found at i:64055872 original size:30 final size:30
Alignment explanation
Indices: 64055838--64055934 Score: 106
Period size: 30 Copynumber: 3.2 Consensus size: 30
64055828 AGCTCACTCC
64055838 TAGCTCATA-TTCAGCTCAAGAGCTAAACCT
1 TAGCTCA-ACTTCAGCTCAAGAGCTAAACCT
* * * * *
64055868 TAGCTCAACTTCAGCTTAGGAGTTTAGCCT
1 TAGCTCAACTTCAGCTCAAGAGCTAAACCT
* * *
64055898 CAGCTCAACTTTAGCTCACGAGCTAAACCT
1 TAGCTCAACTTCAGCTCAAGAGCTAAACCT
64055928 TAGCTCA
1 TAGCTCA
64055935 TTTTAGTTTA
Statistics
Matches: 53, Mismatches: 13, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
29 1 0.02
30 52 0.98
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.28
Consensus pattern (30 bp):
TAGCTCAACTTCAGCTCAAGAGCTAAACCT
Found at i:64058479 original size:5 final size:5
Alignment explanation
Indices: 64058469--64058525 Score: 55
Period size: 5 Copynumber: 11.0 Consensus size: 5
64058459 AAGAGAAAAT
*
64058469 AAAGA AAAGA AAAGA AAGAGCA AAAGA AGA-A AAAGA AAATGA AATA-A
1 AAAGA AAAGA AAAGA AA-AG-A AAAGA AAAGA AAAGA AAA-GA AA-AGA
64058516 AAAGA AAAGA
1 AAAGA AAAGA
64058526 GAGGCAAGAG
Statistics
Matches: 44, Mismatches: 2, Indels: 12
0.76 0.03 0.21
Matches are distributed among these distances:
4 4 0.09
5 28 0.64
6 8 0.18
7 4 0.09
ACGTcount: A:0.75, C:0.02, G:0.19, T:0.04
Consensus pattern (5 bp):
AAAGA
Found at i:64058603 original size:11 final size:12
Alignment explanation
Indices: 64058573--64058603 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
64058563 TTGAGAGAAA
64058573 TTGAAAAAGCCT
1 TTGAAAAAGCCT
64058585 TTGAAAAAGCCT
1 TTGAAAAAGCCT
64058597 TTGAAAA
1 TTGAAAA
64058604 CCAAAAAGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.45, C:0.13, G:0.16, T:0.26
Consensus pattern (12 bp):
TTGAAAAAGCCT
Found at i:64058681 original size:30 final size:31
Alignment explanation
Indices: 64058629--64058688 Score: 79
Period size: 30 Copynumber: 2.0 Consensus size: 31
64058619 GCCTGAAAAA
*
64058629 GAGATTGAAAAAGAGAACG-AAAAGAAATTT
1 GAGAGTGAAAAAGAGAACGAAAAAGAAATTT
*
64058659 GAGAGTGAAAAAGA-AGATGAAAAAGAAATT
1 GAGAGTGAAAAAGAGA-ACGAAAAAGAAATT
64058689 AAAACAAAAG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
29 1 0.04
30 15 0.58
31 10 0.38
ACGTcount: A:0.58, C:0.02, G:0.25, T:0.15
Consensus pattern (31 bp):
GAGAGTGAAAAAGAGAACGAAAAAGAAATTT
Found at i:64071355 original size:15 final size:15
Alignment explanation
Indices: 64071335--64071389 Score: 69
Period size: 15 Copynumber: 3.8 Consensus size: 15
64071325 ACTCTCCTCA
*
64071335 TTCTTTTCTTTCTTT
1 TTCTTTTCTCTCTTT
*
64071350 TTCTTTTCACTCTTT
1 TTCTTTTCTCTCTTT
*
64071365 TTGTTTT-TCTCTTT
1 TTCTTTTCTCTCTTT
64071379 TTCTTTT-TCTC
1 TTCTTTTCTCTC
64071390 GATCAATAGA
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
14 16 0.46
15 19 0.54
ACGTcount: A:0.02, C:0.22, G:0.02, T:0.75
Consensus pattern (15 bp):
TTCTTTTCTCTCTTT
Found at i:64073437 original size:17 final size:17
Alignment explanation
Indices: 64073403--64073437 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
64073393 CTTTTTCTTT
*
64073403 TTTTTTTTAATTCCGAA
1 TTTTTTTTAATACCGAA
*
64073420 TTTTTTTTAATACTGAA
1 TTTTTTTTAATACCGAA
64073437 T
1 T
64073438 ACACAAAGAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.26, C:0.09, G:0.06, T:0.60
Consensus pattern (17 bp):
TTTTTTTTAATACCGAA
Found at i:64082032 original size:12 final size:12
Alignment explanation
Indices: 64082002--64082062 Score: 81
Period size: 12 Copynumber: 5.0 Consensus size: 12
64081992 AGACCGTATG
64082002 CAATTTTTTTTT
1 CAATTTTTTTTT
64082014 CAAAATTTTTTTTT
1 C--AATTTTTTTTT
64082028 CAATTTCTTTTTT
1 CAATTT-TTTTTT
64082041 CAATTTTTTTTT
1 CAATTTTTTTTT
64082053 --ATTTTTTTTT
1 CAATTTTTTTTT
64082063 GAATCTACAA
Statistics
Matches: 46, Mismatches: 0, Indels: 8
0.85 0.00 0.15
Matches are distributed among these distances:
10 10 0.22
12 12 0.26
13 12 0.26
14 12 0.26
ACGTcount: A:0.18, C:0.08, G:0.00, T:0.74
Consensus pattern (12 bp):
CAATTTTTTTTT
Found at i:64082052 original size:13 final size:13
Alignment explanation
Indices: 64082005--64082052 Score: 69
Period size: 13 Copynumber: 3.6 Consensus size: 13
64081995 CCGTATGCAA
*
64082005 TTTTTTTTTCAAAA
1 TTTTTTTTTC-AAT
64082019 TTTTTTTTTCAAT
1 TTTTTTTTTCAAT
*
64082032 TTCTTTTTTCAAT
1 TTTTTTTTTCAAT
64082045 TTTTTTTT
1 TTTTTTTT
64082053 ATTTTTTTTT
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
13 21 0.68
14 10 0.32
ACGTcount: A:0.17, C:0.08, G:0.00, T:0.75
Consensus pattern (13 bp):
TTTTTTTTTCAAT
Found at i:64085259 original size:33 final size:33
Alignment explanation
Indices: 64085221--64085283 Score: 85
Period size: 33 Copynumber: 1.9 Consensus size: 33
64085211 GATTACTCAC
64085221 TTCACTCG-TTTCTTTT-ATAGACTCTCTTTCTTT
1 TTCACTCGATTTCTTTTCA-AG-CTCTCTTTCTTT
*
64085254 TTCACTTGATTTCTTTTCAAGCTCTCTTTC
1 TTCACTCGATTTCTTTTCAAGCTCTCTTTC
64085284 AATTTCTTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
33 16 0.59
34 10 0.37
35 1 0.04
ACGTcount: A:0.13, C:0.25, G:0.06, T:0.56
Consensus pattern (33 bp):
TTCACTCGATTTCTTTTCAAGCTCTCTTTCTTT
Found at i:64085309 original size:14 final size:12
Alignment explanation
Indices: 64085301--64085331 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
64085291 TTTTTTCGCT
64085301 TTTTCTTTTTCG
1 TTTTCTTTTTCG
64085313 TTTTCTTTTT-G
1 TTTTCTTTTTCG
64085324 TTTTCTTT
1 TTTTCTTT
64085332 CAATTTCTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 9 0.47
12 10 0.53
ACGTcount: A:0.00, C:0.13, G:0.06, T:0.81
Consensus pattern (12 bp):
TTTTCTTTTTCG
Found at i:64086423 original size:42 final size:42
Alignment explanation
Indices: 64086349--64086437 Score: 112
Period size: 44 Copynumber: 2.1 Consensus size: 42
64086339 GACTTTTCAC
64086349 TTTTTTTTTCTTCTTTTTTTAACTCGATTTTTTGTTCACCCTTT
1 TTTTTTTTTCTTCTTTTTTTAACTCGATTTTTTGTTCA--CTTT
* *
64086393 TTTTTCTTTTCTT-TTTTTTT-GCTTGATTTTTT-TTCACTTT
1 TTTTT-TTTTCTTCTTTTTTTAACTCGATTTTTTGTTCACTTT
64086433 TTTTT
1 TTTTT
64086438 GAATTTTTTT
Statistics
Matches: 42, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
40 9 0.21
42 4 0.10
43 10 0.24
44 12 0.29
45 7 0.17
ACGTcount: A:0.07, C:0.15, G:0.04, T:0.74
Consensus pattern (42 bp):
TTTTTTTTTCTTCTTTTTTTAACTCGATTTTTTGTTCACTTT
Found at i:64086473 original size:10 final size:11
Alignment explanation
Indices: 64086418--64086485 Score: 55
Period size: 11 Copynumber: 5.7 Consensus size: 11
64086408 TTTTTGCTTG
64086418 ATTTTTTTTCA
1 ATTTTTTTTCA
* *
64086429 CTTTTTTTTGA
1 ATTTTTTTTCA
64086440 ATTTTTTTTTCAATCA
1 A--TTTTTTT---TCA
64086456 ATTTTTTTTCA
1 ATTTTTTTTCA
**
64086467 ATTTTTTTTTG
1 ATTTTTTTTCA
64086478 ATTTTTTT
1 ATTTTTTT
64086486 GTTACTCCAA
Statistics
Matches: 46, Mismatches: 6, Indels: 10
0.74 0.10 0.16
Matches are distributed among these distances:
11 29 0.63
13 7 0.15
14 7 0.15
16 3 0.07
ACGTcount: A:0.16, C:0.07, G:0.03, T:0.74
Consensus pattern (11 bp):
ATTTTTTTTCA
Found at i:64086475 original size:15 final size:15
Alignment explanation
Indices: 64086440--64086476 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
64086430 TTTTTTTTGA
64086440 ATTTTTTTTTCAATC
1 ATTTTTTTTTCAATC
*
64086455 AATTTTTTTTCAAT-
1 ATTTTTTTTTCAATC
64086469 -TTTTTTTT
1 ATTTTTTTT
64086477 GATTTTTTTG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
13 7 0.35
15 13 0.65
ACGTcount: A:0.19, C:0.08, G:0.00, T:0.73
Consensus pattern (15 bp):
ATTTTTTTTTCAATC
Found at i:64088504 original size:19 final size:19
Alignment explanation
Indices: 64088480--64088519 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
64088470 AGCTCCCATG
64088480 TAGCTCCACACCAGCTCAT
1 TAGCTCCACACCAGCTCAT
***
64088499 TAGCTCGGGACCAGCTCAT
1 TAGCTCCACACCAGCTCAT
64088518 TA
1 TA
64088520 TCAGCTCACG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.25, C:0.35, G:0.17, T:0.23
Consensus pattern (19 bp):
TAGCTCCACACCAGCTCAT
Found at i:64089783 original size:14 final size:14
Alignment explanation
Indices: 64089761--64089808 Score: 60
Period size: 14 Copynumber: 3.4 Consensus size: 14
64089751 ACCTAAACCG
* *
64089761 ACCAATTTGTTCAT
1 ACCATTTTGTTCCT
64089775 ACCATTTTGTTCCT
1 ACCATTTTGTTCCT
* *
64089789 ACCCTTTCGTTCCT
1 ACCATTTTGTTCCT
64089803 ACCATT
1 ACCATT
64089809 CCATTCGTAC
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 29 1.00
ACGTcount: A:0.19, C:0.31, G:0.06, T:0.44
Consensus pattern (14 bp):
ACCATTTTGTTCCT
Found at i:64090195 original size:13 final size:13
Alignment explanation
Indices: 64090177--64090207 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
64090167 TATACAAGTT
64090177 AAAAAAATCAAAA
1 AAAAAAATCAAAA
*
64090190 AAAAAATTCAAAA
1 AAAAAAATCAAAA
64090203 AAAAA
1 AAAAA
64090208 TCGAAAAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.84, C:0.06, G:0.00, T:0.10
Consensus pattern (13 bp):
AAAAAAATCAAAA
Done.