Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 203 of 349
Found at i:65592827 original size:81 final size:81
Alignment explanation
Indices: 65592720--65592967 Score: 354
Period size: 81 Copynumber: 3.1 Consensus size: 81
65592710 TTTCACAATT
* * * *
65592720 GAGGGTAAAACAGTAATTTTGTAAATTGAGGGTAAAATGATAATTTTGTAAATCGAGGGTAAAAC
1 GAGGGTAAAACGGTAATTTTGTAAATTGAGGGTAAAACGGTAATTTTATAAATCGAGGGTAAAAC
*
65592785 GGTAATTCTGTAAATC
66 GGTAATTCTATAAATC
* *
65592801 GAGGGTAAAATGGTAATTCTT-TAAATTGAGGGTAAAACGGTAATTTTATAAATCGAGGGTGAAA
1 GAGGGTAAAACGGTAATT-TTGTAAATTGAGGGTAAAACGGTAATTTTATAAATCGAGGGTAAAA
*
65592865 CGATAATTCTATAAATC
65 CGGTAATTCTATAAATC
* * * *
65592882 GAGGGTAAAACGGTAATTTTGTAAATCGAGGGTGAAACGGTAATTCTATAAATCGAGGGTAAAAT
1 GAGGGTAAAACGGTAATTTTGTAAATTGAGGGTAAAACGGTAATTTTATAAATCGAGGGTAAAAC
*
65592947 GGTAATTCTACAAATC
66 GGTAATTCTATAAATC
*
65592963 AAGGG
1 GAGGG
65592968 CATTTCAGTA
Statistics
Matches: 148, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
80 2 0.01
81 144 0.97
82 2 0.01
ACGTcount: A:0.39, C:0.08, G:0.24, T:0.29
Consensus pattern (81 bp):
GAGGGTAAAACGGTAATTTTGTAAATTGAGGGTAAAACGGTAATTTTATAAATCGAGGGTAAAAC
GGTAATTCTATAAATC
Found at i:65595257 original size:31 final size:31
Alignment explanation
Indices: 65595217--65595331 Score: 196
Period size: 31 Copynumber: 3.7 Consensus size: 31
65595207 TTAGTCTTGA
* * *
65595217 CATAT-ACTGGACTGAAGCCTTTCCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
65595247 CATATCACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
65595278 CATATCACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
65595309 CATATCACTGGGCCGAAGCCTTT
1 CATATCACTGGGCCGAAGCCTTT
65595332 ACTGTAAACG
Statistics
Matches: 81, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
30 5 0.06
31 76 0.94
ACGTcount: A:0.29, C:0.26, G:0.17, T:0.29
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTTCATAAAT
Found at i:65595402 original size:42 final size:42
Alignment explanation
Indices: 65595355--65595446 Score: 175
Period size: 42 Copynumber: 2.2 Consensus size: 42
65595345 TGGCCCTTAG
*
65595355 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
65595397 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
65595439 GCCCATTT
1 GCCCATTT
65595447 GGGGAGACTA
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 49 1.00
ACGTcount: A:0.33, C:0.21, G:0.15, T:0.32
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
Found at i:65595622 original size:25 final size:25
Alignment explanation
Indices: 65595594--65595663 Score: 106
Period size: 25 Copynumber: 2.8 Consensus size: 25
65595584 CTCTTTTAAT
*
65595594 AACTGGGGTAAAGCCC-TTTCTGATA
1 AACTGGGGCAAAGCCCTTTTC-GATA
*
65595619 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
65595644 AACTGGGGCAAAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
65595664 AGCACTTCCT
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
25 38 0.90
26 4 0.10
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.26
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:65596503 original size:27 final size:27
Alignment explanation
Indices: 65596473--65596537 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
65596463 GGGCATATTC
65596473 GTCATTTTACCATACAAGGG-TATTACG
1 GTCATTTTACCATACAAGGGCT-TTACG
* * *
65596500 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCATTTTACCATACAAGGGCTTTACG
*
65596527 GTCTTTTTACC
1 GTCATTTTACC
65596538 TATTAGGGGT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 31 0.97
28 1 0.03
ACGTcount: A:0.22, C:0.25, G:0.18, T:0.35
Consensus pattern (27 bp):
GTCATTTTACCATACAAGGGCTTTACG
Found at i:65596611 original size:27 final size:27
Alignment explanation
Indices: 65596581--65596633 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
65596571 AGGTGTTTTG
65596581 GTAAATCTACAAACCAAGGGTATTTCA
1 GTAAATCTACAAACCAAGGGTATTTCA
* * * *
65596608 GTAATTTTATAAACCAATGGTATTTC
1 GTAAATCTACAAACCAAGGGTATTTC
65596634 TATAATTTTT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.38, C:0.15, G:0.13, T:0.34
Consensus pattern (27 bp):
GTAAATCTACAAACCAAGGGTATTTCA
Found at i:65596740 original size:54 final size:54
Alignment explanation
Indices: 65596596--65596777 Score: 177
Period size: 54 Copynumber: 3.3 Consensus size: 54
65596586 TCTACAAACC
* * * *
65596596 AAGGGTATTTCAGTAATTTTATAAACCAATGGTATTTCT-ATAATTTTTAAAAAGTG
1 AAGGGTATTTCGGTAATTTTATAAACCAGTGGTATTT-TGGTAA-TTTTAAAAA-TT
* * ** * *
65596652 AAGGGTATTTCTGTAATTTTGTAAATTAGGGGTATTTTGGTAATTTTATAAATT
1 AAGGGTATTTCGGTAATTTTATAAACCAGTGGTATTTTGGTAATTTTAAAAATT
* * * * *
65596706 AAGGGTATTTCGGTAATTTCACAAACCAGTGGTATTTCGGTAATTTTACAAACT
1 AAGGGTATTTCGGTAATTTTATAAACCAGTGGTATTTTGGTAATTTTAAAAATT
* *
65596760 AGGGGTATTTTGGTAATT
1 AAGGGTATTTCGGTAATT
65596778 CTATCTTATA
Statistics
Matches: 104, Mismatches: 21, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
54 61 0.59
55 9 0.09
56 34 0.33
ACGTcount: A:0.32, C:0.07, G:0.19, T:0.42
Consensus pattern (54 bp):
AAGGGTATTTCGGTAATTTTATAAACCAGTGGTATTTTGGTAATTTTAAAAATT
Found at i:65596756 original size:27 final size:26
Alignment explanation
Indices: 65596588--65596777 Score: 119
Period size: 27 Copynumber: 7.0 Consensus size: 26
65596578 TTGGTAAATC
*
65596588 TACAAACCAAGGGTATTTCAGTAATTT
1 TACAAACC-AGGGTATTTCGGTAATTT
* * **
65596615 TATAAACCAATGGTATTTCTATAATTTT
1 TACAAACC-AGGGTATTTCGGTAA-TTT
* ** *
65596643 TAAAAAGTGAAGGGTATTTCTGTAATTT
1 TACAAA--CCAGGGTATTTCGGTAATTT
** ** *
65596671 TGTAAATTAGGGGTATTTTGGTAATTT
1 TACAAACCA-GGGTATTTCGGTAATTT
* **
65596698 TATAAATTAAGGGTATTTCGGTAATTT
1 TACAAA-CCAGGGTATTTCGGTAATTT
*
65596725 CACAAACCAGTGGTATTTCGGTAATTT
1 TACAAACCAG-GGTATTTCGGTAATTT
* *
65596752 TACAAACTAGGGGTATTTTGGTAATT
1 TACAAACCA-GGGTATTTCGGTAATT
65596778 CTATCTTATA
Statistics
Matches: 131, Mismatches: 25, Indels: 14
0.77 0.15 0.08
Matches are distributed among these distances:
26 3 0.02
27 97 0.74
28 18 0.14
29 13 0.10
ACGTcount: A:0.33, C:0.08, G:0.18, T:0.41
Consensus pattern (26 bp):
TACAAACCAGGGTATTTCGGTAATTT
Found at i:65596771 original size:81 final size:81
Alignment explanation
Indices: 65596655--65596810 Score: 217
Period size: 81 Copynumber: 1.9 Consensus size: 81
65596645 AAAAGTGAAG
* ** * * *
65596655 GGTATTTCTGTAATTTTGTAAATTAGGGGTATTTTGGTAATTTTATAAATTA-A-GGGTATTTCG
1 GGTATTTCGGTAATTTTACAAACTAGGGGTATTTTGGTAATTCTAT--ATTATAGGGGTATTTCA
65596718 GTAATTTCACAAACCAGT
64 GTAATTTCACAAACCAGT
*
65596736 GGTATTTCGGTAATTTTACAAACTAGGGGTATTTTGGTAATTCTATCTTATAGGGGTATTTCAGT
1 GGTATTTCGGTAATTTTACAAACTAGGGGTATTTTGGTAATTCTATATTATAGGGGTATTTCAGT
65596801 AATTTCACAA
66 AATTTCACAA
65596811 TCGAGGGTAA
Statistics
Matches: 66, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
79 3 0.05
80 1 0.02
81 62 0.94
ACGTcount: A:0.29, C:0.09, G:0.20, T:0.42
Consensus pattern (81 bp):
GGTATTTCGGTAATTTTACAAACTAGGGGTATTTTGGTAATTCTATATTATAGGGGTATTTCAGT
AATTTCACAAACCAGT
Found at i:65596817 original size:27 final size:26
Alignment explanation
Indices: 65596679--65596810 Score: 104
Period size: 27 Copynumber: 4.9 Consensus size: 26
65596669 TTTGTAAATT
* * * *
65596679 AGGGGTATTTTGGTAATTTTATAAATT
1 AGGGGTATTTCGGTAATTTCACAAA-C
*
65596706 AAGGGTATTTCGGTAATTTCACAAACC
1 AGGGGTATTTCGGTAATTTCACAAA-C
* *
65596733 AGTGGTATTTCGGTAATTTTACAAAC
1 AGGGGTATTTCGGTAATTTCACAAAC
* ** *
65596759 TAGGGGTATTTTGGTAA-TTCTATCTTAT
1 -AGGGGTATTTCGGTAATTTC-A-CAAAC
*
65596787 AGGGGTATTTCAGTAATTTCACAA
1 AGGGGTATTTCGGTAATTTCACAA
65596811 TCGAGGGTAA
Statistics
Matches: 82, Mismatches: 19, Indels: 9
0.75 0.17 0.08
Matches are distributed among these distances:
26 4 0.05
27 73 0.89
28 5 0.06
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.40
Consensus pattern (26 bp):
AGGGGTATTTCGGTAATTTCACAAAC
Found at i:65596843 original size:27 final size:27
Alignment explanation
Indices: 65596809--65597006 Score: 252
Period size: 27 Copynumber: 7.3 Consensus size: 27
65596799 GTAATTTCAC
* *
65596809 AATCGAGGGTAAAACGATAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTTTATA
* * *
65596836 AATTGAGGGTAAAATGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTTTATA
* *
65596863 AATTGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTTTATA
* *
65596890 AATCAAGGGTGAAACGGTAATTTTATA
1 AATCGAGGGTAAAACGGTAATTTTATA
*
65596917 AATCGAGGGTAAAATGGTAATTTTATA
1 AATCGAGGGTAAAACGGTAATTTTATA
* * *
65596944 AATAGAGGGTGAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTTTATA
* * *
65596971 AATCGAGGGTAAAATGGTAATTCTACA
1 AATCGAGGGTAAAACGGTAATTTTATA
65596998 AATCGAGGG
1 AATCGAGGG
65597007 CATTTCAGTA
Statistics
Matches: 152, Mismatches: 19, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 152 1.00
ACGTcount: A:0.39, C:0.06, G:0.25, T:0.30
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTTTATA
Found at i:65596925 original size:81 final size:81
Alignment explanation
Indices: 65596809--65597006 Score: 279
Period size: 81 Copynumber: 2.4 Consensus size: 81
65596799 GTAATTTCAC
* * * * *
65596809 AATCGAGGGTAAAACGATAATTTTGTAAATTGAGGGTAAAATGGTAATTTTGTAAATTGAGGGTA
1 AATCGAGGGTAAAACGGTAATTTTATAAATCGAGGGTAAAATGGTAATTTTATAAATAGAGGGTA
* *
65596874 AAACGGTAATTTTGTA
66 AAACGGTAATTCTATA
* * *
65596890 AATCAAGGGTGAAACGGTAATTTTATAAATCGAGGGTAAAATGGTAATTTTATAAATAGAGGGTG
1 AATCGAGGGTAAAACGGTAATTTTATAAATCGAGGGTAAAATGGTAATTTTATAAATAGAGGGTA
65596955 AAACGGTAATTCTATA
66 AAACGGTAATTCTATA
* * *
65596971 AATCGAGGGTAAAATGGTAATTCTACAAATCGAGGG
1 AATCGAGGGTAAAACGGTAATTTTATAAATCGAGGG
65597007 CATTTCAGTA
Statistics
Matches: 102, Mismatches: 15, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
81 102 1.00
ACGTcount: A:0.39, C:0.06, G:0.25, T:0.30
Consensus pattern (81 bp):
AATCGAGGGTAAAACGGTAATTTTATAAATCGAGGGTAAAATGGTAATTTTATAAATAGAGGGTA
AAACGGTAATTCTATA
Found at i:65609678 original size:15 final size:15
Alignment explanation
Indices: 65609641--65609669 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
65609631 ATTTCCTATC
65609641 TAATAATAATAATTA
1 TAATAATAATAATTA
65609656 TAATAATAATAATT
1 TAATAATAATAATT
65609670 TTATAAATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (15 bp):
TAATAATAATAATTA
Found at i:65609711 original size:25 final size:27
Alignment explanation
Indices: 65609654--65609712 Score: 70
Period size: 25 Copynumber: 2.3 Consensus size: 27
65609644 TAATAATAAT
*
65609654 TATAATAATAATAATTTTATAAATATA
1 TATAATAATAATAATTTTACAAATATA
*
65609681 TCTAATAATAA-AATTTT-CAAATATCA
1 TATAATAATAATAATTTTACAAATAT-A
65609707 -ATAATA
1 TATAATA
65609713 CAGTAAATAA
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
25 11 0.39
26 7 0.25
27 10 0.36
ACGTcount: A:0.54, C:0.05, G:0.00, T:0.41
Consensus pattern (27 bp):
TATAATAATAATAATTTTACAAATATA
Found at i:65609798 original size:19 final size:18
Alignment explanation
Indices: 65609761--65609804 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
65609751 ATACATACAG
65609761 TAAT-ATTTTTCTAATAA
1 TAATAATTTTTCTAATAA
*
65609778 TAATAATTTTATCTCATAA
1 TAATAATTTT-TCTAATAA
*
65609797 TACTAATT
1 TAATAATT
65609805 AAAATTTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 4 0.17
18 5 0.22
19 14 0.61
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATAATTTTTCTAATAA
Found at i:65611161 original size:16 final size:17
Alignment explanation
Indices: 65611140--65611172 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
65611130 CACATTGAAG
65611140 TGTTTT-TTGAAAACCA
1 TGTTTTATTGAAAACCA
65611156 TGTTTTCATTGAAAACC
1 TGTTTT-ATTGAAAACC
65611173 CTTTTTGATG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.30, C:0.15, G:0.12, T:0.42
Consensus pattern (17 bp):
TGTTTTATTGAAAACCA
Found at i:65616521 original size:25 final size:25
Alignment explanation
Indices: 65616493--65616711 Score: 296
Period size: 25 Copynumber: 8.8 Consensus size: 25
65616483 AACTTATTCA
* * *
65616493 GAAATAATAAGGGAAAATTTAACCG
1 GAAATATTAAGAGCAAATTTAACCG
65616518 GAAATATTAAGAGCAAATTTAACCG
1 GAAATATTAAGAGCAAATTTAACCG
*
65616543 AAAATATTAAGAGCAAATTTAACCG
1 GAAATATTAAGAGCAAATTTAACCG
* *
65616568 GAATTATTAAGAACAAATTTAACCG
1 GAAATATTAAGAGCAAATTTAACCG
* *
65616593 GAATTATTAAGAGCAAATTTAACTG
1 GAAATATTAAGAGCAAATTTAACCG
65616618 GAAATATTAAGAGCAAATTTAACCG
1 GAAATATTAAGAGCAAATTTAACCG
* * *
65616643 GAATTATTAAGAACAAATTTAACCA
1 GAAATATTAAGAGCAAATTTAACCG
*
65616668 GAATTATTAAGAGCAAATTTAACC-
1 GAAATATTAAGAGCAAATTTAACCG
* *
65616692 AAAATTATTAAGAACAAATT
1 GAAA-TATTAAGAGCAAATT
65616712 AACAAGCTTA
Statistics
Matches: 175, Mismatches: 18, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
24 2 0.01
25 173 0.99
ACGTcount: A:0.50, C:0.11, G:0.13, T:0.26
Consensus pattern (25 bp):
GAAATATTAAGAGCAAATTTAACCG
Found at i:65616586 original size:75 final size:75
Alignment explanation
Indices: 65616507--65616711 Score: 349
Period size: 75 Copynumber: 2.7 Consensus size: 75
65616497 TAATAAGGGA
*
65616507 AAATTTAACCGGAAATATTAAGAGCAAATTTAACCGAAAATATTAAGAGCAAATTTAACCGGAAT
1 AAATTTAACCGGAATTATTAAGAGCAAATTTAACCGAAAATATTAAGAGCAAATTTAACCGGAAT
65616572 TATTAAGAAC
66 TATTAAGAAC
* *
65616582 AAATTTAACCGGAATTATTAAGAGCAAATTTAACTGGAAATATTAAGAGCAAATTTAACCGGAAT
1 AAATTTAACCGGAATTATTAAGAGCAAATTTAACCGAAAATATTAAGAGCAAATTTAACCGGAAT
65616647 TATTAAGAAC
66 TATTAAGAAC
* *
65616657 AAATTTAACCAGAATTATTAAGAGCAAATTTAACC-AAAATTATTAAGAACAAATT
1 AAATTTAACCGGAATTATTAAGAGCAAATTTAACCGAAAA-TATTAAGAGCAAATT
65616712 AACAAGCTTA
Statistics
Matches: 122, Mismatches: 7, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
74 3 0.02
75 119 0.98
ACGTcount: A:0.49, C:0.11, G:0.12, T:0.27
Consensus pattern (75 bp):
AAATTTAACCGGAATTATTAAGAGCAAATTTAACCGAAAATATTAAGAGCAAATTTAACCGGAAT
TATTAAGAAC
Found at i:65617300 original size:21 final size:21
Alignment explanation
Indices: 65617261--65617300 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
65617251 TAAAGCCATC
*
65617261 AAATTTAATAATGCTAATTTA
1 AAATTTAATAATCCTAATTTA
65617282 AAATTTAAT-ATCCTGAATT
1 AAATTTAATAATCCT-AATT
65617301 AGGGCTTAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.45, C:0.07, G:0.05, T:0.42
Consensus pattern (21 bp):
AAATTTAATAATCCTAATTTA
Found at i:65618631 original size:46 final size:46
Alignment explanation
Indices: 65618581--65618704 Score: 230
Period size: 46 Copynumber: 2.7 Consensus size: 46
65618571 GTTGAGCATT
*
65618581 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCC
65618627 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCC
*
65618673 CGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
65618705 GGGGAGGGTT
Statistics
Matches: 76, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
46 76 1.00
ACGTcount: A:0.21, C:0.21, G:0.28, T:0.30
Consensus pattern (46 bp):
CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCC
Found at i:65621752 original size:20 final size:20
Alignment explanation
Indices: 65621729--65621767 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
65621719 TCTAGCATAA
65621729 TTCAGCTCATTTGAGCTCAT
1 TTCAGCTCATTTGAGCTCAT
**
65621749 TTCAGCTTGTTTGAGCTCA
1 TTCAGCTCATTTGAGCTCA
65621768 ACCGAGCTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.18, C:0.23, G:0.18, T:0.41
Consensus pattern (20 bp):
TTCAGCTCATTTGAGCTCAT
Found at i:65624347 original size:79 final size:82
Alignment explanation
Indices: 65624236--65624420 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
65624226 GCTACTCGTT
* * *
65624236 CAAATGCCTTCGGGTCATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
65624299 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
65624316 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
65624379 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
65624396 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
65624421 CATCATTCGA
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 55 0.60
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:65624420 original size:40 final size:40
Alignment explanation
Indices: 65624217--65624420 Score: 229
Period size: 40 Copynumber: 5.1 Consensus size: 40
65624207 CGGAATTTAA
** * *
65624217 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGTCATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
65624257 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
65624297 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
65624336 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
65624376 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
65624416 CCGGA
1 CCGGA
65624421 CATCATTCGA
Statistics
Matches: 140, Mismatches: 17, Indels: 14
0.82 0.10 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.24
40 93 0.66
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:65625910 original size:56 final size:55
Alignment explanation
Indices: 65625843--65626018 Score: 325
Period size: 56 Copynumber: 3.1 Consensus size: 55
65625833 TATTAGTTTA
65625843 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATT-TTCCATTAACACAACATGTTTCATGACATGTT
65625899 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTA-TTTTCCATTAACACAACATGTTTCATGACATGTT
65625955 TTGCCCATGCTTCTTATTTTATTTTACCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTT-CCATTAACACAACATGTTTCATGACATGTT
65626011 TTGCCCAT
1 TTGCCCAT
65626019 CATCCCTTGT
Statistics
Matches: 118, Mismatches: 0, Indels: 4
0.97 0.00 0.03
Matches are distributed among these distances:
55 4 0.03
56 112 0.95
57 2 0.02
ACGTcount: A:0.23, C:0.23, G:0.09, T:0.45
Consensus pattern (55 bp):
TTGCCCATGCTTCTTATTTTATTTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:65632000 original size:40 final size:40
Alignment explanation
Indices: 65631796--65632000 Score: 231
Period size: 40 Copynumber: 5.1 Consensus size: 40
65631786 CGGAATTTAA
** * *
65631796 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGTCATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
65631836 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
65631876 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
65631915 CCGGA-ATTAGTAATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAA-CTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
65631956 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
65631996 CCGGA
1 CCGGA
65632001 CATCATTCGA
Statistics
Matches: 142, Mismatches: 15, Indels: 16
0.82 0.09 0.09
Matches are distributed among these distances:
39 19 0.13
40 97 0.68
41 25 0.18
42 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:65633500 original size:56 final size:56
Alignment explanation
Indices: 65633427--65633602 Score: 316
Period size: 56 Copynumber: 3.1 Consensus size: 56
65633417 TATTAGTTTA
* * *
65633427 TTGCCCATGCTTGTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATATT
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
*
65633483 TTTCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
65633539 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
65633595 TTGCCCAT
1 TTGCCCAT
65633603 CATCCCTTGT
Statistics
Matches: 115, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
56 115 1.00
ACGTcount: A:0.23, C:0.22, G:0.09, T:0.46
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:65635282 original size:15 final size:17
Alignment explanation
Indices: 65635262--65635301 Score: 59
Period size: 15 Copynumber: 2.5 Consensus size: 17
65635252 TTTTTCACAA
65635262 TCTTTTTCTTTTTC-T-
1 TCTTTTTCTTTTTCTTG
65635277 TCTTTTTC-TTTTCTTG
1 TCTTTTTCTTTTTCTTG
65635293 TCTTTTTCT
1 TCTTTTTCT
65635302 CATTTTCTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
14 5 0.23
15 9 0.41
16 8 0.36
ACGTcount: A:0.00, C:0.20, G:0.03, T:0.78
Consensus pattern (17 bp):
TCTTTTTCTTTTTCTTG
Found at i:65639117 original size:21 final size:20
Alignment explanation
Indices: 65639091--65639131 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
65639081 AGGTTGTTGA
65639091 GCTCAATTCAGCTCATTTGCT
1 GCTCAA-TCAGCTCATTTGCT
* *
65639112 GCTCAATGAGCTCGTTTGCT
1 GCTCAATCAGCTCATTTGCT
65639132 CATTCCATGG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 12 0.67
21 6 0.33
ACGTcount: A:0.17, C:0.27, G:0.20, T:0.37
Consensus pattern (20 bp):
GCTCAATCAGCTCATTTGCT
Found at i:65640727 original size:30 final size:30
Alignment explanation
Indices: 65640641--65640728 Score: 81
Period size: 30 Copynumber: 2.9 Consensus size: 30
65640631 CTAGCTTACT
* *
65640641 TTCAACTCACGAGCTAAACCTTAGCTCAAC
1 TTCAGCTCACGAGCTAAAGCTTAGCTCAAC
* ** *
65640671 TTCAGCTTA-GAAG-TTTAGCCTCAGCTCAAC
1 TTCAGCTCACG-AGCTAAAG-CTTAGCTCAAC
*
65640701 TTTAGCTCACGAGCTAAAGCTTAGCTCA
1 TTCAGCTCACGAGCTAAAGCTTAGCTCA
65640729 TTTTAGTTTA
Statistics
Matches: 43, Mismatches: 11, Indels: 8
0.69 0.18 0.13
Matches are distributed among these distances:
29 3 0.07
30 36 0.84
31 4 0.09
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (30 bp):
TTCAGCTCACGAGCTAAAGCTTAGCTCAAC
Found at i:65646315 original size:19 final size:19
Alignment explanation
Indices: 65646291--65646330 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
65646281 AGCTCCCATG
65646291 TAGCTCCACACCAGCTCAT
1 TAGCTCCACACCAGCTCAT
***
65646310 TAGCTCGGGACCAGCTCAT
1 TAGCTCCACACCAGCTCAT
65646329 TA
1 TA
65646331 TCAGCTCACG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.25, C:0.35, G:0.17, T:0.23
Consensus pattern (19 bp):
TAGCTCCACACCAGCTCAT
Found at i:65649416 original size:738 final size:738
Alignment explanation
Indices: 65647959--65649435 Score: 2512
Period size: 738 Copynumber: 2.0 Consensus size: 738
65647949 TTTTGGCCAA
* * *
65647959 ACATTGCTTCATTTAACAAGGTTGGCCGAATCTACAAGTGACCATTGGATATCTTGCATTCACTT
1 ACATTGCTTCATTTAACAAGGTTGGCCGAACCTACAAGTGACCATTGGACATCATGCATTCACTT
* * * * *
65648024 TGAGTTTTCTTAAGCATGAAGATGCATTCGTCCACCATTCCCAAAACTGAATCTGGTCATGCATA
66 TGAGTTTTCTTAAGCATGAAGATGCATTCGTCCACCATTACCAAAACCGAATCTAGACATGCACA
* * * **
65648089 TTAAGAGTTATTTTTCTAGAATTTTCTTTTAATTAATGTGTAAGTATGAAAGGCCATTCGGCTAC
131 TTAAGAGTCATTTTTCTAGAATTTTCTTTTAATTAATATGTAAGCATGAAAGGCCAACCGGCTAC
*
65648154 CTAGACTTAGGCTTATAAATACTTGTTCAATTTCCATGTAAAGGACTTTTGAAACTTATGTTAAT
196 CTAGACTTAGGCCTATAAATACTTGTTCAATTTCCATGTAAAGGACTTTTGAAACTTATGTTAAT
65648219 GTTATGCTGCCGAAATTGTGAGGCAAACTTTTCTTATATTTCGTTCAAAGATTCGTTTGGCATTC
261 GTTATGCTGCCGAAATTGTGAGGCAAACTTTTCTTATATTTCGTTCAAAGATTCGTTTGGCATTC
* *
65648284 CTAGCATTCTAGTTGTGTTAATCGTGTTCTTTGTTGTACCCAAACTTATCACTATTCTTAGTGTG
326 CTAGCATTCTAGTTGTGTCAATCGTGTTCTTTGTCGTACCCAAACTTATCACTATTCTTAGTGTG
*
65648349 GCGTTCAACATACCGAGGTTTCTATCTTGTTAGATAGTGGGTCGAGGTTTTCCCTTACCAAACCA
391 GCGTTCAACATACCGAGGTTCCTATCTTGTTAGATAGTGGGTCGAGGTTTTCCCTTACCAAACCA
*
65648414 ATAACCGAACTCAAAAGGCTTAATCAACGGGTCGATACCATTTCGGTATTGGTTCTTGAAAGTAC
456 ATAACCGAACTCAAAAAGCTTAATCAACGGGTCGATACCATTTCGGTATTGGTTCTTGAAAGTAC
*
65648479 CTTTAGTAGTTCAAACCCGTTCTCTTTTTTACCTAATCGAACCTAAACCGACCAATTTGTTCATA
521 CTTTAGTAGTTCAAACCCGTTCTCTTCTTTACCTAATCGAACCTAAACCGACCAATTTGTTCATA
*
65648544 TCCTTTTGTTCCTACCCTTTCATTCCTACCATTCCATTCGTACCCCTCTTTCTACTTTGACCATA
586 TCCTTTTGTTCCTACCCTTTCATTCCTACCATTCCATTCGTACCCCTCTTTCTACTTCGACCATA
* *
65648609 CCTTCAACTCAACTAAACCTAACGTAACTTCTCGTAGATGATCGGGCAATTTACATACGACTCGA
651 CCTTCAACTCAACTAAACCTAACGTAACTTCTCGTAGACGATCGGGCAATCTACATACGACTCGA
65648674 CTCTTC-CTGAGACGGTTCATATC
716 CTCTTCTC-GAGACGGTTCATATC
65648697 ACATTGCTTCATTTAACAAGGTTGGCCGAACCTACAAGTGACCATTGGACATCATGCATTCACTT
1 ACATTGCTTCATTTAACAAGGTTGGCCGAACCTACAAGTGACCATTGGACATCATGCATTCACTT
* * * * * * *
65648762 TGAGTTTTCTTAAGCATGAAGATTCATTCATTTC-CTATTACCATAGCCGAATCTAGACTTGCAC
66 TGAGTTTTCTTAAGCATGAAGATGCATTC-GTCCACCATTACCAAAACCGAATCTAGACATGCAC
*
65648826 ATTAAGGGTCATTTTTCTAGAATTTTC-TTTAATTAATATGTAAGCATGAAAGGCCAACCGGCTA
130 ATTAAGAGTCATTTTTCTAGAATTTTCTTTTAATTAATATGTAAGCATGAAAGGCCAACCGGCTA
*
65648890 CCTAGACTTAGGCCTATAAATACTTGTTCAATTTCCATGTAAAGGACTTTTGAAACTTTTGTTAA
195 CCTAGACTTAGGCCTATAAATACTTGTTCAATTTCCATGTAAAGGACTTTTGAAACTTATGTTAA
* *
65648955 TGTTATGCTGCCGAAATTGTGAGGCATACTTTTCTTATATTTCGTTCAAAGATTCGTTTGGCGTT
260 TGTTATGCTGCCGAAATTGTGAGGCAAACTTTTCTTATATTTCGTTCAAAGATTCGTTTGGCATT
*
65649020 CCTAGCATTCTAGTTGTGTCAATCGTGTTCTTTGTCGTACCCGAACTTATCACTATTCTTAGTGT
325 CCTAGCATTCTAGTTGTGTCAATCGTGTTCTTTGTCGTACCCAAACTTATCACTATTCTTAGTGT
*
65649085 GGCGTTCAACATACCGAGGTTCCTATCTTGTTAGATAGTGGGTCGAGG-TTTCCTTTACCAAACC
390 GGCGTTCAACATACCGAGGTTCCTATCTTGTTAGATAGTGGGTCGAGGTTTTCCCTTACCAAACC
*
65649149 TATAACCGAACTCAAAAAGCTTAATCAACGGGTCGATACCATTTCGGTATTGGTTCTTGAAAGTA
455 AATAACCGAACTCAAAAAGCTTAATCAACGGGTCGATACCATTTCGGTATTGGTTCTTGAAAGTA
* *
65649214 CCTTTAGTAGTTCCAAACCCCGTTCTCTTCTTTACTTAGTCGAACCTAAACCGACCAATTTGTTC
520 CCTTTAGTAGTT-CAAA-CCCGTTCTCTTCTTTACCTAATCGAACCTAAACCGACCAATTTGTTC
*
65649279 ATATCCTTTTGTTCCTACCCTTTCGTTCCTACCATTCCATTCGTACCCCTCTTTCTACTTCGACC
583 ATATCCTTTTGTTCCTACCCTTTCATTCCTACCATTCCATTCGTACCCCTCTTTCTACTTCGACC
*
65649344 ATACCTTTAACTCAACTAAACCTAACGTAACTTCTCGTAGACGATCGGGCAATCTACATACGACT
648 ATACCTTCAACTCAACTAAACCTAACGTAACTTCTCGTAGACGATCGGGCAATCTACATACGACT
* *
65649409 TGACTCTTCTCGAGACGGTTCGTATC
713 CGACTCTTCTCGAGACGGTTCATATC
65649435 A
1 A
65649436 TCTTGGCCAC
Statistics
Matches: 693, Mismatches: 42, Indels: 8
0.93 0.06 0.01
Matches are distributed among these distances:
736 90 0.13
737 272 0.39
738 328 0.47
739 3 0.00
ACGTcount: A:0.26, C:0.23, G:0.16, T:0.36
Consensus pattern (738 bp):
ACATTGCTTCATTTAACAAGGTTGGCCGAACCTACAAGTGACCATTGGACATCATGCATTCACTT
TGAGTTTTCTTAAGCATGAAGATGCATTCGTCCACCATTACCAAAACCGAATCTAGACATGCACA
TTAAGAGTCATTTTTCTAGAATTTTCTTTTAATTAATATGTAAGCATGAAAGGCCAACCGGCTAC
CTAGACTTAGGCCTATAAATACTTGTTCAATTTCCATGTAAAGGACTTTTGAAACTTATGTTAAT
GTTATGCTGCCGAAATTGTGAGGCAAACTTTTCTTATATTTCGTTCAAAGATTCGTTTGGCATTC
CTAGCATTCTAGTTGTGTCAATCGTGTTCTTTGTCGTACCCAAACTTATCACTATTCTTAGTGTG
GCGTTCAACATACCGAGGTTCCTATCTTGTTAGATAGTGGGTCGAGGTTTTCCCTTACCAAACCA
ATAACCGAACTCAAAAAGCTTAATCAACGGGTCGATACCATTTCGGTATTGGTTCTTGAAAGTAC
CTTTAGTAGTTCAAACCCGTTCTCTTCTTTACCTAATCGAACCTAAACCGACCAATTTGTTCATA
TCCTTTTGTTCCTACCCTTTCATTCCTACCATTCCATTCGTACCCCTCTTTCTACTTCGACCATA
CCTTCAACTCAACTAAACCTAACGTAACTTCTCGTAGACGATCGGGCAATCTACATACGACTCGA
CTCTTCTCGAGACGGTTCATATC
Found at i:65650374 original size:7 final size:6
Alignment explanation
Indices: 65650347--65650397 Score: 50
Period size: 6 Copynumber: 8.0 Consensus size: 6
65650337 TTTTTCACAA
*
65650347 TCTTTT TCTTTT TCTTCTT TCTCTTT TC-TTG TCTTTT TCTCATTT TCTTTT
1 TCTTTT TCTTTT TCTT-TT TCT-TTT TCTTTT TCTTTT TCT--TTT TCTTTT
65650398 ATAATTTTTC
Statistics
Matches: 38, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
5 4 0.11
6 18 0.47
7 9 0.24
8 7 0.18
ACGTcount: A:0.02, C:0.22, G:0.02, T:0.75
Consensus pattern (6 bp):
TCTTTT
Found at i:65650392 original size:19 final size:19
Alignment explanation
Indices: 65650359--65650395 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
65650349 TTTTTCTTTT
65650359 TCTTCTTTCTCTTTTCTTG
1 TCTTCTTTCTCTTTTCTTG
65650378 TCTT-TTTCTCATTTTCTT
1 TCTTCTTTCTC-TTTTCTT
65650396 TTATAATTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.03, C:0.24, G:0.03, T:0.70
Consensus pattern (19 bp):
TCTTCTTTCTCTTTTCTTG
Found at i:65652271 original size:50 final size:49
Alignment explanation
Indices: 65652193--65652371 Score: 216
Period size: 50 Copynumber: 3.6 Consensus size: 49
65652183 ATTGTGAATA
* * *
65652193 CACATGTGCAGTACTAAGTGCAGACTACTACGTGTACCATAATGTTAAGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCA-AATGTTAGGT
* * *
65652243 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTGAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAAT-GTTAGGT
* * *
65652293 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATTGTT-GGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACC-AAATGTTAGGT
* * *
65652342 CGCATATGTAGTACTAAATGCAGGCTACTA
1 CACATGTGTAGTACTAAGTGCAGGCTACTA
65652372 TGCATATCAG
Statistics
Matches: 111, Mismatches: 16, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
49 31 0.28
50 79 0.71
51 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.28
Consensus pattern (49 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATGTTAGGT
Found at i:65652380 original size:99 final size:100
Alignment explanation
Indices: 65652197--65652383 Score: 259
Period size: 99 Copynumber: 1.9 Consensus size: 100
65652187 TGAATACACA
* * *
65652197 TGTGCAGTACTAAGTGCAGACTACTACGTGTACCATAATGTTAAGTCACATGTGTAGTACTAAGT
1 TGTGCAGTACTAAGTGCAGACTACTACGTGTACCAGAATGTTAAGTCACATATGTAGTACTAAAT
**
65652262 GCAGGCTACTACGTGTATCAGATGGTGAGGTCACG
66 GCAGGCTACTACGCATATCAGATGGTGAGGTCACG
* * * * * *
65652297 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATTGTT-GGTCGCATATGTAGTACTAAAT
1 TGTGCAGTACTAAGTGCAGACTACTACGTGTACCAGAATGTTAAGTCACATATGTAGTACTAAAT
*
65652361 GCAGGCTACTATGCATATCAGAT
66 GCAGGCTACTACGCATATCAGAT
65652384 AGCTTTGGCT
Statistics
Matches: 75, Mismatches: 12, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
99 38 0.51
100 37 0.49
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.29
Consensus pattern (100 bp):
TGTGCAGTACTAAGTGCAGACTACTACGTGTACCAGAATGTTAAGTCACATATGTAGTACTAAAT
GCAGGCTACTACGCATATCAGATGGTGAGGTCACG
Found at i:65658404 original size:24 final size:24
Alignment explanation
Indices: 65658377--65658463 Score: 104
Period size: 24 Copynumber: 3.6 Consensus size: 24
65658367 ACTCCATAAG
*
65658377 TCGTGAGAGCATACCTATTACAAC
1 TCGTGAGAGCATACCTATTACAGC
* *
65658401 TCGTGAGAGCATACCGATTATAGC
1 TCGTGAGAGCATACCTATTACAGC
*
65658425 TCATGAGAGCATA-CTGATTTACAGC
1 TCGTGAGAGCATACCT-A-TTACAGC
*
65658450 TCGTGTGAGCATAC
1 TCGTGAGAGCATAC
65658464 ATGTACTGGA
Statistics
Matches: 52, Mismatches: 8, Indels: 4
0.81 0.12 0.06
Matches are distributed among these distances:
23 1 0.02
24 34 0.65
25 17 0.33
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.26
Consensus pattern (24 bp):
TCGTGAGAGCATACCTATTACAGC
Found at i:65660964 original size:48 final size:48
Alignment explanation
Indices: 65660893--65661116 Score: 265
Period size: 48 Copynumber: 4.7 Consensus size: 48
65660883 TGATATGTGC
* * * * *
65660893 GCTAGTGTAAGACCATGTTTGGGACATCGCATCGGCCACATCATAAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCACATTATGAGA
*
65660941 GCTAGTGTAAGACCATCTCTGGGACATGGCATCAGCCACATTATGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCACATTATGAGA
* * *
65660989 GCTAGTGTAAGACCATGTCTGGGATATGGCATTAGCCACATTTTGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCACATTATGAGA
* * * *
65661037 GCCAGTGTAAGACCATGTCTGGGACATAGCATCGGCCTTGACA-TGTGA-A
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCC---ACATTATGAGA
* *
65661086 -CCAGTGTAAGACCATGTCTGAGACATGGCAT
1 GCTAGTGTAAGACCATGTCTGGGACATGGCAT
65661117 TGACTATTTA
Statistics
Matches: 155, Mismatches: 18, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
48 147 0.95
49 1 0.01
50 4 0.03
51 3 0.02
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.24
Consensus pattern (48 bp):
GCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCACATTATGAGA
Found at i:65662162 original size:27 final size:27
Alignment explanation
Indices: 65662132--65662475 Score: 350
Period size: 27 Copynumber: 12.7 Consensus size: 27
65662122 TTAGTTTACC
65662132 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
** ** *
65662159 AAATTAGTAAAATACCTTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
65662186 AAATCACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
** **
65662213 AAATTACCAAAATACCATTGGTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
65662240 AAATTACCAAAATACCCCTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * * *
65662267 AAATTACTAAAATACCCTTTGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * *
65662294 AAATTACTAAAATACCCCTAGCTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
65662321 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
65662348 AAATTATCAAAATACCCCTCGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
** *
65662375 AAATTACCAAAATACCCCTAATTTGTG
1 AAATTACCAAAATACCCCTGGTTTGTA
** ***
65662402 AAATTACTGAAATA-CCCTCGACCTGTA
1 AAATTACCAAAATACCCCT-GGTTTGTA
*** **
65662429 AAATTATTGAAATA-CCCTCGACTTGTA
1 AAATTACCAAAATACCCCT-GGTTTGTA
*
65662456 AAATTACCAAAGTACCCCTG
1 AAATTACCAAAATACCCCTG
65662476 ATTTACACAA
Statistics
Matches: 268, Mismatches: 47, Indels: 4
0.84 0.15 0.01
Matches are distributed among these distances:
26 4 0.01
27 260 0.97
28 4 0.01
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTGTA
Found at i:65662499 original size:81 final size:80
Alignment explanation
Indices: 65662292--65662527 Score: 208
Period size: 81 Copynumber: 2.9 Consensus size: 80
65662282 CCTTTGTTTA
* ** * ***
65662292 TAAAATTACTAAAATACCCCTAGCTTGTA-AAATTACCAAAATACCC-CTGGTTTGTAAAATTAT
1 TAAAATTACCAAAATACCCCTAATTTG-ACAAATTACCGAAATACCCTC-GACCTGTAAAATTAT
* *
65662355 CAAAATACCCCTCGTTTG
64 CGAAATA-CCCTCGCTTG
** * *
65662373 TAAAATTACCAAAATACCCCTAATTTGTGAAATTACTGAAATACCCTCGACCTGTAAAATTATTG
1 TAAAATTACCAAAATACCCCTAATTTGACAAATTACCGAAATACCCTCGACCTGTAAAATTATCG
65662438 AAATACCCTCGACTTG
66 AAATACCCTCG-CTTG
* * *** ** **
65662454 TAAAATTACCAAAGTACCCCTGATTT-ACACAATTACCGTTTTACCCTCGATTTACAAAATTATC
1 TAAAATTACCAAAATACCCCTAATTTGACA-AATTACCGAAATACCCTCGACCTGTAAAATTATC
65662518 GAAATACCCT
65 GAAATACCCT
65662528 TGTAGGGTAG
Statistics
Matches: 126, Mismatches: 25, Indels: 8
0.79 0.16 0.05
Matches are distributed among these distances:
80 7 0.06
81 118 0.94
82 1 0.01
ACGTcount: A:0.38, C:0.23, G:0.08, T:0.31
Consensus pattern (80 bp):
TAAAATTACCAAAATACCCCTAATTTGACAAATTACCGAAATACCCTCGACCTGTAAAATTATCG
AAATACCCTCGCTTG
Found at i:65662525 original size:27 final size:26
Alignment explanation
Indices: 65662402--65662527 Score: 74
Period size: 27 Copynumber: 4.7 Consensus size: 26
65662392 CTAATTTGTG
* **
65662402 AAATTACTGAAATACCCTCGACCTGTA
1 AAATTAC-GAAATACCCTCGACTTACA
* **
65662429 AAATTATTGAAATACCCTCGACTTGTA
1 AAATTA-CGAAATACCCTCGACTTACA
* *
65662456 AAATTACCAAAGTACCC-CTGATTTACA
1 AAATTACGAAA-TACCCTC-GACTTACA
* *** *
65662483 CAATTACCGTTTTACCCTCGATTTACA
1 AAATTA-CGAAATACCCTCGACTTACA
65662510 AAATTATCGAAATACCCT
1 AAATTA-CGAAATACCCT
65662528 TGTAGGGTAG
Statistics
Matches: 77, Mismatches: 17, Indels: 10
0.74 0.16 0.10
Matches are distributed among these distances:
26 4 0.05
27 71 0.92
28 2 0.03
ACGTcount: A:0.37, C:0.25, G:0.09, T:0.30
Consensus pattern (26 bp):
AAATTACGAAATACCCTCGACTTACA
Found at i:65662547 original size:27 final size:27
Alignment explanation
Indices: 65662517--65662729 Score: 266
Period size: 27 Copynumber: 7.9 Consensus size: 27
65662507 ACAAAATTAT
*
65662517 CGAAATACCCTTGTAGGGTAGAAATAC
1 CGAAATACCCCTGTAGGGTAGAAATAC
*
65662544 CGAAATACCCTTGTAGGGTAGAAATAC
1 CGAAATACCCCTGTAGGGTAGAAATAC
* *
65662571 CGAAATACCCCTATAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAAATAC
** * *
65662598 TAAAATACCCCTGTAGGGTAGAATTAT
1 CGAAATACCCCTGTAGGGTAGAAATAC
*
65662625 CGAAATACCCTTGTAGGGTAGAAATAC
1 CGAAATACCCCTGTAGGGTAGAAATAC
* * * *
65662652 CAAAATACCCCTGTAGGATAGGATTAC
1 CGAAATACCCCTGTAGGGTAGAAATAC
* *
65662679 TGAAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAAATAC
* *
65662706 CGAGATACCCTTGTAGGGTA-AAAT
1 CGAAATACCCCTGTAGGGTAGAAAT
65662730 TACCATTTTA
Statistics
Matches: 161, Mismatches: 25, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
26 3 0.02
27 158 0.98
ACGTcount: A:0.36, C:0.19, G:0.21, T:0.24
Consensus pattern (27 bp):
CGAAATACCCCTGTAGGGTAGAAATAC
Found at i:65662744 original size:81 final size:80
Alignment explanation
Indices: 65662518--65662734 Score: 328
Period size: 81 Copynumber: 2.7 Consensus size: 80
65662508 CAAAATTATC
* *
65662518 GAAATACCCTTGTAGGGTAGAAATACCGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCT
1 GAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAAATACC-AAATACCCCT
*
65662583 ATAGGGTAGAATTACT
65 ATAGGATAGAATTACT
* *
65662599 AAAATACCCCTGTAGGGTAGAATTATCGAAATACCCTTGTAGGGTAGAAATACCAAAATACCCCT
1 GAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAAATACC-AAATACCCCT
* *
65662664 GTAGGATAGGATTACT
65 ATAGGATAGAATTACT
*
65662680 GAAATACCCCTGTAGGGTAGAATTACCGAGATACCCTTGTAGGGTA-AAATTACCA
1 GAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAAA-TACCA
65662735 TTTTACCCCT
Statistics
Matches: 124, Mismatches: 11, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
80 4 0.03
81 120 0.97
ACGTcount: A:0.36, C:0.19, G:0.21, T:0.24
Consensus pattern (80 bp):
GAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAAATACCAAATACCCCTA
TAGGATAGAATTACT
Found at i:65663280 original size:6 final size:6
Alignment explanation
Indices: 65663249--65663336 Score: 74
Period size: 6 Copynumber: 14.3 Consensus size: 6
65663239 TTGCATTCAC
* *
65663249 ATTCTG ATTTTG ATTCTG -TTAGCTG ATACTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* *
65663298 -TCACCTG ATTCTG ATTCTG ATTCTA ATTCT- AGTTCTG AT
1 AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
65663337 AATGTTTCTT
Statistics
Matches: 67, Mismatches: 7, Indels: 16
0.74 0.08 0.18
Matches are distributed among these distances:
5 4 0.06
6 54 0.81
7 7 0.10
8 2 0.03
ACGTcount: A:0.19, C:0.17, G:0.16, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:65663284 original size:31 final size:31
Alignment explanation
Indices: 65663249--65663327 Score: 113
Period size: 31 Copynumber: 2.5 Consensus size: 31
65663239 TTGCATTCAC
* * *
65663249 ATTCTGATTTTGATTCTGTTAGCTGATACTG
1 ATTCTGATTCTGATTCTGTCACCTGATACTG
*
65663280 ATTCTGATTCTGATTCTGTCACCTGATTCTG
1 ATTCTGATTCTGATTCTGTCACCTGATACTG
*
65663311 ATTCTGATTCTAATTCT
1 ATTCTGATTCTGATTCT
65663328 AGTTCTGATA
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 43 1.00
ACGTcount: A:0.19, C:0.18, G:0.15, T:0.48
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTCACCTGATACTG
Found at i:65665295 original size:27 final size:27
Alignment explanation
Indices: 65665273--65665910 Score: 772
Period size: 27 Copynumber: 23.6 Consensus size: 27
65665263 TTAGTTTACC
*
65665273 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* ** * *
65665300 AAATTACTAAAATACCATTCGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
65665327 AAATCACCAAAATACCCTTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* **
65665354 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTA
65665381 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * * * *
65665408 AAATTACTAAAATATCCTTTGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
65665435 AAATTACCAAAATACCCCTGGTTTTTA
1 AAATTACCAAAATACCCCTGGTTTGTA
65665462 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
65665489 AAATTATCAAAATACCCCTCGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
65665516 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * ***
65665543 AAATTATCAAAATACCCCTAGTTTACC
1 AAATTACCAAAATACCCCTGGTTTGTA
** *
65665570 AAATTACCAAAATACCCCTAATTTGTG
1 AAATTACCAAAATACCCCTGGTTTGTA
** * *
65665597 AAATTACTGAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
65665624 AAATCACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* **
65665651 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
65665678 AAATTACCAAAATACCCCTGGTTTGCA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * * *
65665705 AAATTACTAAAATACCCTTTGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
**
65665732 AAATTACCAAAATACCTTTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * * *
65665759 AAATTACTAAAATACCCTTTGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
65665786 AAATTACCAAAATACCCCTGGCTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
65665813 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * *
65665840 AAATTATCAAAACACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
65665867 AAATTACCAAAATACCCCTGATTTGTG
1 AAATTACCAAAATACCCCTGGTTTGTA
**
65665894 AAATTACTGAAATACCC
1 AAATTACCAAAATACCC
65665911 TCAACCTGTA
Statistics
Matches: 524, Mismatches: 87, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 524 1.00
ACGTcount: A:0.39, C:0.21, G:0.08, T:0.32
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTGTA
Found at i:65665924 original size:27 final size:27
Alignment explanation
Indices: 65665894--65665954 Score: 104
Period size: 27 Copynumber: 2.3 Consensus size: 27
65665884 CTGATTTGTG
65665894 AAATTACTGAAATACCCTCAACCTGTA
1 AAATTACTGAAATACCCTCAACCTGTA
* *
65665921 AAATTATTGAAATACCCTCAACTTGTA
1 AAATTACTGAAATACCCTCAACCTGTA
65665948 AAATTAC
1 AAATTAC
65665955 CAAAGTACCC
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.43, C:0.21, G:0.07, T:0.30
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCAACCTGTA
Found at i:65666078 original size:27 final size:27
Alignment explanation
Indices: 65666011--65666247 Score: 255
Period size: 27 Copynumber: 8.9 Consensus size: 27
65666001 AAAATTATCA
*
65666011 AAATACCCTTGTAGGGTAGAAATA-CG
1 AAATACCCCTGTAGGGTAGAAATACCG
**
65666037 AAATACCATTGTAGGGTAGAAATACCG
1 AAATACCCCTGTAGGGTAGAAATACCG
* *
65666064 AAATACCCCTATAGGGTAGAAATATCG
1 AAATACCCCTGTAGGGTAGAAATACCG
* **
65666091 AAATACCCCTGTGGGGTA-AAATTACTA
1 AAATACCCCTGTAGGGTAGAAA-TACCG
* * *
65666118 AAATACCCTTGTAGGATAGAATTACCG
1 AAATACCCCTGTAGGGTAGAAATACCG
* *
65666145 AAATACCCTTTTAGGGTAGAAATACCG
1 AAATACCCCTGTAGGGTAGAAATACCG
* **
65666172 AAATACCCCTGTAGGGTAGAATTACTA
1 AAATACCCCTGTAGGGTAGAAATACCG
* *
65666199 AAATACCCCTATAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAAATACCG
* * *
65666226 AGATACCCTTGTGGGGTA-AAAT
1 AAATACCCCTGTAGGGTAGAAAT
65666248 TACCATTTTA
Statistics
Matches: 176, Mismatches: 32, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
26 29 0.16
27 145 0.82
28 2 0.01
ACGTcount: A:0.38, C:0.18, G:0.20, T:0.24
Consensus pattern (27 bp):
AAATACCCCTGTAGGGTAGAAATACCG
Found at i:65666243 original size:81 final size:81
Alignment explanation
Indices: 65666011--65666235 Score: 317
Period size: 81 Copynumber: 2.8 Consensus size: 81
65666001 AAAATTATCA
* * * * * *
65666011 AAATACCCTTGTAGGGTAGAAATAC-GAAATACCATTGTAGGGTAGAAATACCGAAATACCCCTA
1 AAATACCCCTGTAGGGTAGAATTACTAAAATACCCTTGTAGGGTAGAATTACCGAAATACCCTTA
*
65666075 TAGGGTAGAAATATCG
66 TAGGGTAGAAATACCG
* * * *
65666091 AAATACCCCTGTGGGGTAAAATTACTAAAATACCCTTGTAGGATAGAATTACCGAAATACCCTTT
1 AAATACCCCTGTAGGGTAGAATTACTAAAATACCCTTGTAGGGTAGAATTACCGAAATACCCTTA
65666156 TAGGGTAGAAATACCG
66 TAGGGTAGAAATACCG
* * *
65666172 AAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTATAGGGTAGAATTACCGAGATACCCTT
1 AAATACCCCTGTAGGGTAGAATTACTAAAATACCCTTGTAGGGTAGAATTACCGAAATACCCTT
65666236 GTGGGGTAAA
Statistics
Matches: 127, Mismatches: 17, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
80 21 0.17
81 106 0.83
ACGTcount: A:0.38, C:0.19, G:0.19, T:0.24
Consensus pattern (81 bp):
AAATACCCCTGTAGGGTAGAATTACTAAAATACCCTTGTAGGGTAGAATTACCGAAATACCCTTA
TAGGGTAGAAATACCG
Found at i:65666697 original size:6 final size:6
Alignment explanation
Indices: 65666666--65666753 Score: 65
Period size: 6 Copynumber: 14.3 Consensus size: 6
65666656 TTGCATTCAC
* *
65666666 ATTCTG ATTTTG ATTCT- ATTACCTG ATACTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * *
65666715 -TCACCTG ATTTTG ATTCTG ATTCTA ATTCT- AGTTCTG AT
1 AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
65666754 AATGTTTCTT
Statistics
Matches: 65, Mismatches: 9, Indels: 16
0.72 0.10 0.18
Matches are distributed among these distances:
5 5 0.08
6 51 0.78
7 6 0.09
8 3 0.05
ACGTcount: A:0.20, C:0.17, G:0.14, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:65666697 original size:25 final size:25
Alignment explanation
Indices: 65666669--65666738 Score: 83
Period size: 25 Copynumber: 2.8 Consensus size: 25
65666659 CATTCACATT
65666669 CTGATTTTGATTCT-ATTACCTGAT-A-
1 CTGATTTTGATTCTGATT--CTG-TCAC
*
65666694 CTGATTCTGATTCTGATTCTGTCAC
1 CTGATTTTGATTCTGATTCTGTCAC
65666719 CTGATTTTGATTCTGATTCT
1 CTGATTTTGATTCTGATTCT
65666739 AATTCTAGTT
Statistics
Matches: 40, Mismatches: 2, Indels: 6
0.83 0.04 0.12
Matches are distributed among these distances:
23 1 0.03
24 4 0.10
25 32 0.80
26 3 0.08
ACGTcount: A:0.19, C:0.19, G:0.14, T:0.49
Consensus pattern (25 bp):
CTGATTTTGATTCTGATTCTGTCAC
Found at i:65666701 original size:31 final size:31
Alignment explanation
Indices: 65666666--65666745 Score: 106
Period size: 31 Copynumber: 2.6 Consensus size: 31
65666656 TTGCATTCAC
* *
65666666 ATTCTGATTTTGATTCTATTACCTGATACTG
1 ATTCTGATTCTGATTCTATCACCTGATACTG
* **
65666697 ATTCTGATTCTGATTCTGTCACCTGATTTTG
1 ATTCTGATTCTGATTCTATCACCTGATACTG
*
65666728 ATTCTGATTCTAATTCTA
1 ATTCTGATTCTGATTCTA
65666746 GTTCTGATAA
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 42 1.00
ACGTcount: A:0.21, C:0.17, G:0.12, T:0.49
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTATCACCTGATACTG
Found at i:65669185 original size:40 final size:40
Alignment explanation
Indices: 65669118--65669361 Score: 262
Period size: 40 Copynumber: 6.1 Consensus size: 40
65669108 CGGAATTTAA
* *
65669118 CCGGATATAGCT-ACTCGCTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
65669158 CCGGTTAGAGTAACTCGCACAATTGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
65669198 CCGGATTTAGTAATTCGCACAAATGCCTTCGGGACGT-GC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
65669237 CCGGATATAGTAACTTGCACAAAGGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
65669277 CCGGGATATAGTAGCTCACACGAATGCCTTCGGGACTTAGC
1 CC-GGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* ** * *
65669318 CC-GAAATTAGCCACTAGCTCAAATG-CTCTCGGGACTTAGC
1 CCGGATA-TAGTAACTCGCACAAATGCCT-TCGGGACTTAGC
65669358 CCGG
1 CCGG
65669362 TTATCATCCG
Statistics
Matches: 169, Mismatches: 29, Indels: 11
0.81 0.14 0.05
Matches are distributed among these distances:
39 40 0.24
40 93 0.55
41 36 0.21
ACGTcount: A:0.25, C:0.28, G:0.25, T:0.23
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:65678035 original size:48 final size:48
Alignment explanation
Indices: 65677964--65678477 Score: 559
Period size: 48 Copynumber: 10.8 Consensus size: 48
65677954 TGATATGTGC
* *
65677964 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGACCATATTATGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGA
*
65678012 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGG
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGA
* ** *
65678060 GCCAGTGTAAGACCATGTCTGGGACATGGCATTAGCCACATTACGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGA
*** * *
65678108 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGATG-TTGA-TATGTGT
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCG--GCCACATTATGAGA
* * *
65678156 GATAGTGTAAGACAATGTCTGGGACATGGCATCGGCAACATTATGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGA
* *
65678204 GCCAGTGTAAGACCATGTCTGGGACA-GGCATTGGCCACATTATGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGA
* *
65678251 GCCAGTGTAAGACCATGT-TCGGG-CATGGCATCGGCCACATTATTAGA
1 GCTAGTGTAAGACCATGTCT-GGGACATGGCATCGGCCACATTATGAGA
* * *
65678298 GCCAATGTAAGACCATGTCTGGGACATGGCATCGG---CATTAAGACTAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATG---AGA
*
65678346 GCTAGTGTAAGGCCATGTCTGGGACATGGCATCGG---CATTGA-GACTAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATT-ATG---AGA
* * * *
65678394 GCTAGTGTAAGACCATGTCTGGGACATGGCATTGGCCTCGA-CATGTGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCAC-ATTATGAGA
* * * *
65678442 ACCAGTGTAAGACTATGTCTAGGACATGGCATCGGC
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGC
65678478 AATTTATCCT
Statistics
Matches: 403, Mismatches: 46, Indels: 34
0.83 0.10 0.07
Matches are distributed among these distances:
45 5 0.01
46 4 0.01
47 80 0.20
48 307 0.76
49 2 0.00
50 2 0.00
51 2 0.00
52 1 0.00
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (48 bp):
GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGA
Found at i:65680515 original size:43 final size:44
Alignment explanation
Indices: 65680449--65680619 Score: 203
Period size: 43 Copynumber: 4.0 Consensus size: 44
65680439 AGCTCGTACA
*
65680449 ATGCCAATGTCCCA-AAAGTGGTCTTACACGTAATCAAATATCG
1 ATGCCAATGTCCCAGAAAGTGGTCTTACACGAAATCAAATATCG
* *
65680492 ATGCCACTGTCCCAGATAG-GGTCTTACACGAAATCAAATA-CG
1 ATGCCAATGTCCCAGAAAGTGGTCTTACACGAAATCAAATATCG
*
65680534 ATGCCTATGTCCCAGAAA-TGGTCTTACACGTAAATCATAAGT-T-G
1 ATGCCAATGTCCCAGAAAGTGGTCTTACACG-AAATCA-AA-TATCG
* * *
65680578 ATGCCAATGTCCCAG-ATGTGCTCTTACATGAAATCAAATATC
1 ATGCCAATGTCCCAGAAAGTGGTCTTACACGAAATCAAATATC
65680620 AGATTCTATG
Statistics
Matches: 109, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
41 1 0.01
42 31 0.28
43 46 0.42
44 30 0.28
45 1 0.01
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.26
Consensus pattern (44 bp):
ATGCCAATGTCCCAGAAAGTGGTCTTACACGAAATCAAATATCG
Found at i:65680604 original size:86 final size:85
Alignment explanation
Indices: 65680449--65680617 Score: 229
Period size: 86 Copynumber: 2.0 Consensus size: 85
65680439 AGCTCGTACA
* *
65680449 ATGCCAATGTCCCAAAAGTGGTCTTACACGTAATCAAATATCGATGCCACTGTCCCAGATAGGGT
1 ATGCCAATGTCCCAAAAGTGGTCTTACACGTAATCAAATATCGATGCCAATGTCCCAGATAGGCT
65680514 CTTACACGAAATCAAATACG
66 CTTACACGAAATCAAATACG
*
65680534 ATGCCTATGTCCCAGAAA-TGGTCTTACACGTAAATCATAAGT-T-GATGCCAATGTCCCAGAT-
1 ATGCCAATGTCCCA-AAAGTGGTCTTACACGT-AATCA-AA-TATCGATGCCAATGTCCCAGATA
*
65680595 GTGCTCTTACATGAAATCAAATA
62 G-GCTCTTACACGAAATCAAATA
65680618 TCAGATTCTA
Statistics
Matches: 75, Mismatches: 4, Indels: 9
0.85 0.05 0.10
Matches are distributed among these distances:
85 27 0.36
86 44 0.59
87 3 0.04
88 1 0.01
ACGTcount: A:0.34, C:0.23, G:0.17, T:0.26
Consensus pattern (85 bp):
ATGCCAATGTCCCAAAAGTGGTCTTACACGTAATCAAATATCGATGCCAATGTCCCAGATAGGCT
CTTACACGAAATCAAATACG
Found at i:65684144 original size:19 final size:20
Alignment explanation
Indices: 65684120--65684157 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
65684110 ATTGAGTTAA
65684120 TATTAT-TAATTTTAATGTT
1 TATTATGTAATTTTAATGTT
*
65684139 TATTATGTTATTTTAATGT
1 TATTATGTAATTTTAATGT
65684158 AAACAGATCG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 6 0.35
20 11 0.65
ACGTcount: A:0.29, C:0.00, G:0.08, T:0.63
Consensus pattern (20 bp):
TATTATGTAATTTTAATGTT
Found at i:65684375 original size:20 final size:20
Alignment explanation
Indices: 65684350--65684404 Score: 83
Period size: 20 Copynumber: 2.8 Consensus size: 20
65684340 TGTGGTTCAA
*
65684350 CTCATTCGAGCTCAAGTTAG
1 CTCATTCGAGCTCAAGTCAG
*
65684370 CTCATTCGTGCTCAAGTCAG
1 CTCATTCGAGCTCAAGTCAG
*
65684390 CTCATTCAAGCTCAA
1 CTCATTCGAGCTCAA
65684405 TTTAACTCGT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.25, C:0.29, G:0.16, T:0.29
Consensus pattern (20 bp):
CTCATTCGAGCTCAAGTCAG
Found at i:65686215 original size:13 final size:12
Alignment explanation
Indices: 65686197--65686240 Score: 70
Period size: 12 Copynumber: 3.7 Consensus size: 12
65686187 TAAAAAAAAT
* *
65686197 AAAAAAATTTGA
1 AAAAAAAATTCA
65686209 AAAAAAAATTCA
1 AAAAAAAATTCA
65686221 AAAAAAAATTCA
1 AAAAAAAATTCA
65686233 AAAAAAAA
1 AAAAAAAA
65686241 GTTTGTATTC
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 30 1.00
ACGTcount: A:0.77, C:0.05, G:0.02, T:0.16
Consensus pattern (12 bp):
AAAAAAAATTCA
Found at i:65686223 original size:11 final size:11
Alignment explanation
Indices: 65686188--65686239 Score: 54
Period size: 12 Copynumber: 4.7 Consensus size: 11
65686178 ACGGTATTGT
65686188 AAAAAAAA-T-
1 AAAAAAAATTC
* *
65686197 AAAAAAATTTGA
1 AAAAAAAATT-C
65686209 AAAAAAAATTC
1 AAAAAAAATTC
65686220 AAAAAAAAATTC
1 -AAAAAAAATTC
65686232 AAAAAAAA
1 AAAAAAAA
65686240 AGTTTGTATT
Statistics
Matches: 36, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
9 7 0.19
10 1 0.03
11 8 0.22
12 20 0.56
ACGTcount: A:0.79, C:0.04, G:0.02, T:0.15
Consensus pattern (11 bp):
AAAAAAAATTC
Found at i:65686299 original size:13 final size:13
Alignment explanation
Indices: 65686281--65686333 Score: 54
Period size: 13 Copynumber: 3.9 Consensus size: 13
65686271 ATTTAGTATT
65686281 GAAGAAAAAAAAA
1 GAAGAAAAAAAAA
65686294 GAAGAAAAAAAAA
1 GAAGAAAAAAAAA
**
65686307 TCGGAATTAAAAAAAA
1 ---GAAGAAAAAAAAA
65686323 -AAGAAAAAAAA
1 GAAGAAAAAAAA
65686334 TCGAAATTGA
Statistics
Matches: 33, Mismatches: 4, Indels: 7
0.75 0.09 0.16
Matches are distributed among these distances:
12 9 0.27
13 13 0.39
16 11 0.33
ACGTcount: A:0.79, C:0.02, G:0.13, T:0.06
Consensus pattern (13 bp):
GAAGAAAAAAAAA
Found at i:65686327 original size:28 final size:29
Alignment explanation
Indices: 65686286--65686354 Score: 106
Period size: 27 Copynumber: 2.4 Consensus size: 29
65686276 GTATTGAAGA
*
65686286 AAAAAAAAGAAGAAAAAAAAATCGGAATT-
1 AAAAAAAA-AAGAAAAAAAAATCGAAATTG
65686315 AAAAAAAAAAG-AAAAAAAATCGAAATTG
1 AAAAAAAAAAGAAAAAAAAATCGAAATTG
65686343 AAAAAAAAAAGA
1 AAAAAAAAAAGA
65686355 GTGATTGAAA
Statistics
Matches: 37, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
27 15 0.41
28 14 0.38
29 8 0.22
ACGTcount: A:0.77, C:0.03, G:0.12, T:0.09
Consensus pattern (29 bp):
AAAAAAAAAAGAAAAAAAAATCGAAATTG
Found at i:65687222 original size:17 final size:15
Alignment explanation
Indices: 65687202--65687240 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 15
65687192 GCGAGCGAGA
65687202 AAATGAACATGAAAAAG
1 AAATGAA-A-GAAAAAG
65687219 AAATGAAAGAAAAAG
1 AAATGAAAGAAAAAG
65687234 AAGATGA
1 AA-ATGA
65687241 GTGGGAGATA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 9 0.43
16 5 0.24
17 7 0.33
ACGTcount: A:0.67, C:0.03, G:0.21, T:0.10
Consensus pattern (15 bp):
AAATGAAAGAAAAAG
Found at i:65688748 original size:20 final size:20
Alignment explanation
Indices: 65688723--65688777 Score: 83
Period size: 20 Copynumber: 2.8 Consensus size: 20
65688713 TGTGGTTCAA
*
65688723 CTCATTCGAGCTCAAGTTAG
1 CTCATTCGAGCTCAAGTCAG
*
65688743 CTCATTCGTGCTCAAGTCAG
1 CTCATTCGAGCTCAAGTCAG
*
65688763 CTCATTCAAGCTCAA
1 CTCATTCGAGCTCAA
65688778 TTTAACTCGT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.25, C:0.29, G:0.16, T:0.29
Consensus pattern (20 bp):
CTCATTCGAGCTCAAGTCAG
Found at i:65693851 original size:7 final size:7
Alignment explanation
Indices: 65693841--65693870 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
65693831 AAATATTTTG
65693841 GGGTTTA
1 GGGTTTA
65693848 GGGTTTA
1 GGGTTTA
65693855 GGGTTTA
1 GGGTTTA
*
65693862 AGGTTTA
1 GGGTTTA
65693869 GG
1 GG
65693871 ATTTTAGTGG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.17, C:0.00, G:0.43, T:0.40
Consensus pattern (7 bp):
GGGTTTA
Found at i:65695510 original size:854 final size:850
Alignment explanation
Indices: 65693078--65695554 Score: 2705
Period size: 848 Copynumber: 2.9 Consensus size: 850
65693068 AAAATCCATT
* * * * *
65693078 CATCTAGAGCCCTAGAAAAAATCAACTACTTGGAGAAACTTGGGATCCTATTTCGAATTTGTCCT
1 CATCTAGAGCCATAGAAAAAATC-ACGACTTGGACAAACTTGGGATCCTATTTCGCATGTGTCCT
* * * *
65693143 GATCAATTATTAAAATCTTTTCTTAA-TCATTTTTTCCCTTCTTGGCATCCTTAATTCGAATGTA
65 TATCAATTATTCAAATCTTTTCTTAATTGATTGTTTCCCTTCTTGGCATCCTTAATTCG-ATG-A
* * * * * * *
65693207 ATTTATCAAGAACAAGTCCTCTTCATG-GACCGACTTGATCTCGTTCATGATCCTTGTTCTTGAT
128 ATTTATCAATAACAAGTCCTCTTCATGAG-CTGACTTGATCTCCTTTAGGATCCTTATTCTTGCT
* ** * *
65693271 CGATTTACTTGTTCTTTTTCTACCACAATGAATTGAATTTATTCAATGTTCTTTAGTTATTAAAT
192 CAATTTACTTGTTCTTTTTCTAATACAATGAATTGAACTTATTCGATGTTCTTTAGTTATTAAAT
* * *
65693336 TTGAATTGGTCATTTATGAAATGACGCATGTAGTATAGGATCAAAAGTTTTTCCAAG-TGTTGGA
257 TTGAATCGGTCATTTATGAAGTGACGCATGTGGTATAGGATCAAAAGTTTTTCCAAGTTG-TGGA
* * *
65693400 TTTTACTTTATGCTCTATATGAAAGAAAGGAA-CGTTAGAGTTCAACCCCACCTGAAACTCAAAC
321 TTTTACTTT-GGCTCTAGATGAACGAAAGGAATC-TTAGAGTTCAACCCCACCTGAAACTCAAAC
* * * *
65693464 AATCCAAGTTAGAATTAACAGAGCTACAACACAAATCAAGTAACAAAAGAATAAGGAAAAC-GAA
384 AATCCAAGTTAGAATTAAAAGGGCTACAACACAAATCAAGTAATAAAAGAACAAGG-AAACTGAA
* * * *
65693528 TAAAAATTAGGGTTCTTGGAGGAGACTAGGTTGATTCATGAGGCACTTGTTTTGTATGAAATTCA
448 TAAAAATTAGGGTTCTTGGAGGAGACTAAGTTGATTAAGGAAGCACTTGTTTTGTATGAAATTCA
* *
65693593 AAGGGGTCAAGGCTACCAATTAAGTGAAAACAAACGATTGGATAGATTTGAAGAAT-AAGATCAA
513 AAGGGGTCAAGGCTACCAATTAAGTGAAAACAAACGATTGAACAGATTTGAAGAATAAAGATCAA
* * * *
65693657 AATTGATTGAAATCACAAGAAAGGTTAAAGGAAGACCCGAAC-AACAAAGAACATGAAAAATCAA
578 AATTGAATGAAATCACAAGAAAGATTAAAGGAAGACTCG-ACGAACAAAGAACATGAAGAATCAA
65693721 GTAAATTAAGATGATTTGAACCGTTCTTGGATGAAAAGAAGATGTCGAATTGAGATCTAAACAAA
642 GTAAATTAAGATGATTTGAACCGTTCTT-GATGAAAAGAAGATGTCGAATTGAGATCTAAACAAA
* * *
65693786 AGAAACAAAAC-AATTAAGGTTTTCAATTACAAGAATGAAAAAAGAAAATATTTTGGGGTTTAGG
706 AG-AACAAAACAAATT-AGATTTTTAATTAAAAGAATG-AAAAAG-AAA-A-----GGG--T---
* * * *
65693850 GTTTAGGGTTTAAGGTTTAGGATTTTAGTGGTGTGAAGATGTCATAAGGAGTCTTAGATTGTTGC
756 -TTTAGGGTTT-A-G--T-GGATTTTAGTAGCGTGAAGATGTCATAAGAAGCCTTAGATTGTTGC
* * *
65693915 ATTATTAAGATTAGTCAAAATCCAAGTTTCATCTTA
815 AATATCAAGATTACTCAAAATCCAAGTTTCATCTTA
* * * ** * * * *
65693951 CATCTAGAGCTAAAGAATAGAA-CTGTGA-TGTGGACAAATTTGGGATCCTATTCCACATGCGTC
1 CATCTAGAGCCATAGAA-AAAATC-ACGACT-TGGACAAACTTGGGATCCTATTTCGCATGTGTC
*
65694014 CTTATCAATTATTCAAATCTTTTCTTAATCGATTGCTTTCCCTTCTTGGCATCCTTAATTC----
63 CTTATCAATTATTCAAATCTTTTCTTAATTGATTG-TTTCCCTTCTTGGCATCCTTAATTCGATG
* * * * *
65694075 ------T---T--C---TCC-CTTCATGAACTGATTTGATCT-CTTTCGAGATACTTATTTTTGC
127 AATTTATCAATAACAAGTCCTCTTCATGAGCTGACTTGATCTCCTTTAG-GATCCTTATTCTTGC
* * * * * * * *
65694124 TTAGTTTACTT-TCTATTTTTCAAATAAAAAGAATAGAAC---TT-GATTTTCTTTAGTTATTAA
191 TCAATTTACTTGT-TCTTTTTCTAATACAATGAATTGAACTTATTCGATGTTCTTTAGTTATTAA
* * ** * * * ****
65694184 ATATGAATCAGTCATTTATGAAGTGTTGCATGTGGTATAGAATCAAAAATTTTTCCTAGTTACAA
255 ATTTGAATCGGTCATTTATGAAGTGACGCATGTGGTATAGGATCAAAAGTTTTTCCAAGTTGTGG
* *
65694249 ATTTTACTTTGGGCTCTAGATGAACGAAAGGAATCTTAG-GTTCGAGCCCACCTGAAACTCAAAC
320 ATTTTACTTT-GGCTCTAGATGAACGAAAGGAATCTTAGAGTTCAACCCCACCTGAAACTCAAAC
* *
65694313 AATCCAAGTTAGAATTAAAAGGGCTACAA-AAAAATAAAGTAATAAAAGAACAAGGAAACTGAAT
384 AATCCAAGTTAGAATTAAAAGGGCTACAACACAAATCAAGTAATAAAAGAACAAGGAAACTGAAT
* * ** * * * *
65694377 CAAAATTAGGGTTCTTGGAGGAGACTAACTCAATTAGGGAAGCACTTATTCTGTATGAAATTTAA
449 AAAAATTAGGGTTCTTGGAGGAGACTAAGTTGATTAAGGAAGCACTTGTTTTGTATGAAATTCAA
* * * * *
65694442 AGGGGTAAAGGCTTCGAATTAAGTGAAATCAAACGGTT-AGACAGATTTGAAGAATAAAGATCAA
514 AGGGGTCAAGGCTACCAATTAAGTGAAAACAAACGATTGA-ACAGATTTGAAGAATAAAGATCAA
* *
65694506 AACTGAATGAAATCACAAGAAAGATTAAAGGAAG-GTC--CGAACACAAAGAACATGAAGAATCA
578 AATTGAATGAAATCACAAGAAAGATTAAAGGAAGACTCGACG-A-ACAAAGAACATGAAGAATCA
65694568 AGTAAATTAAGATGATTTGAACCGTTCTTGAATGAAAAGAAGATGAT-GAATTGA-ATCTAAAAA
641 AGTAAATTAAGATGATTTGAACCGTTCTTG-ATGAAAAGAAGATG-TCGAATTGAGATCT---AA
* * **
65694631 GAAAAAAGAA-AGGAAACATATTAGATTTTTGGTTAAAAGAATGAAAAAGAAAAGGGTTTTAGGG
701 -ACAAAAGAACA--AAACAAATTAGATTTTTAATTAAAAGAATGAAAAAGAAAAGGGTTTTAGGG
* * * *
65694695 TTTAG-GG-TTTTAGTAGCGTGAAGATTTCCA-AAGAAGCCTTGGATTGTTGCAATCTCAGGATT
763 TTTAGTGGATTTTAGTAGCGTGAAGATGT-CATAAGAAGCCTTAGATTGTTGCAATATCAAGATT
**
65694757 ACT-TTAATCCAAGTTTCATCTGT-
827 ACTCAAAATCCAAGTTTCATCT-TA
* * * * * *
65694780 CGTCTAGAGCCATAGAACAAATTCACGACTTGGACAACCTTAGGATCCTTTTTCGCACGTGTCCT
1 CATCTAGAGCCATAGAA-AAAATCACGACTTGGACAAACTTGGGATCCTATTTCGCATGTGTCCT
* * *
65694845 TATCAATTATTCAAATATTTTCTTAATTGATTGTTTGCACTTCTTGACATCCTTAATTCGATTTG
65 TATCAATTATTCAAATCTTTTCTTAATTGATTGTTT-CCCTTCTTGGCATCCTTAATTCGA--TG
65694910 AATTTATCAATAACAAGTCCTCTTCATGAGCTGACTTGATCTCCTTTAGGATCCTTATTCTTGCT
127 AATTTATCAATAACAAGTCCTCTTCATGAGCTGACTTGATCTCCTTTAGGATCCTTATTCTTGCT
*
65694975 CAATTTACTTGTTCTTTTTCTATTACAATGAATTGAACTTATTCGATGTTCTTTAGTTATTAAAT
192 CAATTTACTTGTTCTTTTTCTAATACAATGAATTGAACTTATTCGATGTTCTTTAGTTATTAAAT
* * * *
65695040 TTGAATCGGTCGTTTATGAAGTGACACATGTGGTACAGGATCAAAAGTTTTTCCAAGTTGTGGGT
257 TTGAATCGGTCATTTATGAAGTGACGCATGTGGTATAGGATCAAAAGTTTTTCCAAGTTGTGGAT
* *
65695105 TTTACTTTGGACTCTAGATGAACGAAAGAAATCTTAGAGTTCAACCCCA-CTAAAAACTCAAACA
322 TTTACTTTGG-CTCTAGATGAACGAAAGGAATCTTAGAGTTCAACCCCACCT-GAAACTCAAACA
* * *
65695169 ATCCAAGTTAGAATTAAAAGGGCTGCAACACAAATCAAGTAATAAAAGAACAAGGAATCTGAATT
385 ATCCAAGTTAGAATTAAAAGGGCTACAACACAAATCAAGTAATAAAAGAACAAGGAAACTGAATA
* * * *
65695234 AAAATTAGGGTTCTTGGAAGAGACCAAGTTGATTAAGGAAGCACTTGTTTTGTAAGAAATTGAAA
450 AAAATTAGGGTTCTTGGAGGAGACTAAGTTGATTAAGGAAGCACTTGTTTTGTATGAAATTCAAA
* * * * *
65695299 GGGTTCAAGGCTGCCAGTTAAGTGAAAAAAAAACGTTTGAACAGATTTGAAGAATAAAGATCAAA
515 GGGGTCAAGGCTACCAATTAAGTG-AAAACAAACGATTGAACAGATTTGAAGAATAAAGATCAAA
*
65695364 ATTGAATGAAATCACAAGAAAGATTAAAGGAAGACTCGACGAACAAAGAACATGAAGAACCAAGT
579 ATTGAATGAAATCACAAGAAAGATTAAAGGAAGACTCGACGAACAAAGAACATGAAGAATCAAGT
* * * * * *
65695429 AAATTAAGATGAATTGGACCATTATTAGATGAAAAGAAGATGTCAAATTGAGTTCTAAACAAAAG
644 AAATTAAGATGATTTGAACCGTTCTT-GATGAAAAGAAGATGTCGAATTGAGATCTAAACAAAAG
* *
65695494 AACAAAACAAATTAGATTTTTCAATTAAAAGAATGAAAAAGAAAAGGATTTTATGGTTTAG
708 AACAAAACAAATTAGATTTTT-AATTAAAAGAATGAAAAAGAAAAGGGTTTTAGGGTTTAG
65695555 AGCTTAAGGT
Statistics
Matches: 1327, Mismatches: 207, Indels: 158
0.78 0.12 0.09
Matches are distributed among these distances:
828 3 0.00
829 112 0.08
830 47 0.04
831 4 0.00
835 1 0.00
836 1 0.00
837 10 0.01
841 2 0.00
843 3 0.00
844 1 0.00
845 1 0.00
846 1 0.00
847 10 0.01
848 197 0.15
849 97 0.07
850 170 0.13
851 36 0.03
852 3 0.00
853 7 0.01
854 175 0.13
855 93 0.07
856 109 0.08
857 68 0.05
858 68 0.05
859 5 0.00
860 2 0.00
863 1 0.00
872 1 0.00
873 68 0.05
874 6 0.00
875 25 0.02
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (850 bp):
CATCTAGAGCCATAGAAAAAATCACGACTTGGACAAACTTGGGATCCTATTTCGCATGTGTCCTT
ATCAATTATTCAAATCTTTTCTTAATTGATTGTTTCCCTTCTTGGCATCCTTAATTCGATGAATT
TATCAATAACAAGTCCTCTTCATGAGCTGACTTGATCTCCTTTAGGATCCTTATTCTTGCTCAAT
TTACTTGTTCTTTTTCTAATACAATGAATTGAACTTATTCGATGTTCTTTAGTTATTAAATTTGA
ATCGGTCATTTATGAAGTGACGCATGTGGTATAGGATCAAAAGTTTTTCCAAGTTGTGGATTTTA
CTTTGGCTCTAGATGAACGAAAGGAATCTTAGAGTTCAACCCCACCTGAAACTCAAACAATCCAA
GTTAGAATTAAAAGGGCTACAACACAAATCAAGTAATAAAAGAACAAGGAAACTGAATAAAAATT
AGGGTTCTTGGAGGAGACTAAGTTGATTAAGGAAGCACTTGTTTTGTATGAAATTCAAAGGGGTC
AAGGCTACCAATTAAGTGAAAACAAACGATTGAACAGATTTGAAGAATAAAGATCAAAATTGAAT
GAAATCACAAGAAAGATTAAAGGAAGACTCGACGAACAAAGAACATGAAGAATCAAGTAAATTAA
GATGATTTGAACCGTTCTTGATGAAAAGAAGATGTCGAATTGAGATCTAAACAAAAGAACAAAAC
AAATTAGATTTTTAATTAAAAGAATGAAAAAGAAAAGGGTTTTAGGGTTTAGTGGATTTTAGTAG
CGTGAAGATGTCATAAGAAGCCTTAGATTGTTGCAATATCAAGATTACTCAAAATCCAAGTTTCA
TCTTA
Found at i:65695595 original size:14 final size:14
Alignment explanation
Indices: 65695543--65695595 Score: 52
Period size: 14 Copynumber: 3.7 Consensus size: 14
65695533 AGAAAAGGAT
*
65695543 TTTATGGTTTAGAG
1 TTTATGGTTTAGGG
* * *
65695557 CTTAAGGTTTAGGAT
1 TTTATGGTTTAGG-G
*
65695572 TTTATTGTTTAGGG
1 TTTATGGTTTAGGG
65695586 TTTATGGTTT
1 TTTATGGTTT
65695596 TAGTGATGTG
Statistics
Matches: 29, Mismatches: 9, Indels: 2
0.73 0.22 0.05
Matches are distributed among these distances:
14 19 0.66
15 10 0.34
ACGTcount: A:0.19, C:0.02, G:0.26, T:0.53
Consensus pattern (14 bp):
TTTATGGTTTAGGG
Found at i:65696175 original size:16 final size:17
Alignment explanation
Indices: 65696154--65696189 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
65696144 GTAACGCCCT
*
65696154 AAAAATCTCTAAA-CCC
1 AAAAATCTCGAAATCCC
65696170 AAAAATCTCGAAATCCC
1 AAAAATCTCGAAATCCC
65696187 AAA
1 AAA
65696190 CTTTCTTTGT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 12 0.67
17 6 0.33
ACGTcount: A:0.53, C:0.28, G:0.03, T:0.17
Consensus pattern (17 bp):
AAAAATCTCGAAATCCC
Found at i:65697544 original size:29 final size:29
Alignment explanation
Indices: 65697508--65697599 Score: 132
Period size: 29 Copynumber: 3.2 Consensus size: 29
65697498 TGGACTTAAC
65697508 GGGCCATATAAATGTGATTTGGGCCTAAT
1 GGGCCATATAAATGTGATTTGGGCCTAAT
* *
65697537 GGGCCATATACAGGTGATTTGGGCCTAAT
1 GGGCCATATAAATGTGATTTGGGCCTAAT
* * *
65697566 GGGCCATATGAATATGA-TTGGGCTTAAT
1 GGGCCATATAAATGTGATTTGGGCCTAAT
65697594 GGGCCA
1 GGGCCA
65697600 GATACAGGTA
Statistics
Matches: 56, Mismatches: 7, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
28 16 0.29
29 40 0.71
ACGTcount: A:0.26, C:0.15, G:0.30, T:0.28
Consensus pattern (29 bp):
GGGCCATATAAATGTGATTTGGGCCTAAT
Found at i:65697595 original size:28 final size:29
Alignment explanation
Indices: 65697485--65697599 Score: 128
Period size: 29 Copynumber: 4.0 Consensus size: 29
65697475 GTGAGCATGA
* * * *
65697485 ATATGAATGTGA-CTGGACTTAACGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
65697513 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
65697542 ATAT-ACAGGTGATTTGGGCCTAATGGGCC
1 ATATGA-ATGTGATTTGGGCCTAATGGGCC
* *
65697571 ATATGAATATGA-TTGGGCTTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
65697599 A
1 A
65697600 GATACAGGTA
Statistics
Matches: 75, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
28 28 0.37
29 46 0.61
30 1 0.01
ACGTcount: A:0.28, C:0.15, G:0.29, T:0.29
Consensus pattern (29 bp):
ATATGAATGTGATTTGGGCCTAATGGGCC
Found at i:65698338 original size:21 final size:20
Alignment explanation
Indices: 65698299--65698347 Score: 62
Period size: 21 Copynumber: 2.4 Consensus size: 20
65698289 ATCAGCTCAC
* *
65698299 TTGAGCTCGTTTTATCTCGT
1 TTGAGCTCGATTTAGCTCGT
65698319 TTGAGCTCGAATTTAGCTCGT
1 TTGAGCTCG-ATTTAGCTCGT
*
65698340 TTCAGCTC
1 TTGAGCTC
65698348 ATTCCTTTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
20 9 0.36
21 16 0.64
ACGTcount: A:0.14, C:0.22, G:0.20, T:0.43
Consensus pattern (20 bp):
TTGAGCTCGATTTAGCTCGT
Found at i:65698590 original size:13 final size:13
Alignment explanation
Indices: 65698572--65698600 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
65698562 AATAGTTGTG
65698572 TGTTATTTAATTA
1 TGTTATTTAATTA
65698585 TGTTATTTAATTA
1 TGTTATTTAATTA
65698598 TGT
1 TGT
65698601 AGGTTAGCCG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.28, C:0.00, G:0.10, T:0.62
Consensus pattern (13 bp):
TGTTATTTAATTA
Found at i:65701048 original size:30 final size:30
Alignment explanation
Indices: 65700953--65701049 Score: 81
Period size: 30 Copynumber: 3.2 Consensus size: 30
65700943 AGCTCACTCC
* * *
65700953 TAGCTC-ACTTTCAACTCACAAGCTAAACCT
1 TAGCTCAACTTT-AGCTCACGAGCTAAAGCT
* * * **
65700983 TAGCTCAACTTCAGCTTAGGAG-TTTAGCCT
1 TAGCTCAACTTTAGCTCACGAGCTAAAG-CT
*
65701013 CAGCTCAACTTTAGCTCACGAGCTAAAGCT
1 TAGCTCAACTTTAGCTCACGAGCTAAAGCT
65701043 TAGCTCA
1 TAGCTCA
65701050 TTTTAGTTTA
Statistics
Matches: 49, Mismatches: 15, Indels: 6
0.70 0.21 0.09
Matches are distributed among these distances:
29 2 0.04
30 40 0.82
31 7 0.14
ACGTcount: A:0.29, C:0.29, G:0.14, T:0.28
Consensus pattern (30 bp):
TAGCTCAACTTTAGCTCACGAGCTAAAGCT
Found at i:65704953 original size:13 final size:13
Alignment explanation
Indices: 65704935--65704963 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
65704925 AATAGTTGTG
65704935 TGTTATTTAATTA
1 TGTTATTTAATTA
65704948 TGTTATTTAATTA
1 TGTTATTTAATTA
65704961 TGT
1 TGT
65704964 AGGTTAGCCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.28, C:0.00, G:0.10, T:0.62
Consensus pattern (13 bp):
TGTTATTTAATTA
Found at i:65712099 original size:24 final size:26
Alignment explanation
Indices: 65712048--65712099 Score: 65
Period size: 25 Copynumber: 2.1 Consensus size: 26
65712038 ATTTATGGCT
*
65712048 TCAAACACAAACATATATTTATATAC
1 TCAAACACAAACATATACTTATATAC
65712074 TCAAAC-C-AACATTATACTTATA-AC
1 TCAAACACAAACA-TATACTTATATAC
65712098 TC
1 TC
65712100 CATTTACAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
24 8 0.33
25 10 0.42
26 6 0.25
ACGTcount: A:0.46, C:0.23, G:0.00, T:0.31
Consensus pattern (26 bp):
TCAAACACAAACATATACTTATATAC
Found at i:65716721 original size:55 final size:54
Alignment explanation
Indices: 65716566--65716773 Score: 217
Period size: 55 Copynumber: 3.9 Consensus size: 54
65716556 TATCCTTTTG
* * * * *
65716566 GAACTTACCATTGCCATGTCTAGACATGGTCTTATATGGTATCCTTGCCTTAT-
1 GAACTTACCAATGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTATA
* * * **
65716619 GAACTCACCAATGCCATGCCTCGGCAT-GTCTTACATGGGA-CCTTTGCCTTATA
1 GAACTTACCAATGCCATGCCTTGACATGGTCTTACATGATATCC-TTGCCTTATA
* * *
65716672 GTAACTTATCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGA
1 G-AACTTACCAATGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTATA
* *
65716727 -AACTTTACCAATTTCCATGCCTTGGCATGGTCTTACATGATATCCTT
1 GAAC-TTACCAA-TGCCATGCCTTGACATGGTCTTACATGATATCCTT
65716774 AAACCCTAAT
Statistics
Matches: 129, Mismatches: 19, Indels: 12
0.81 0.12 0.08
Matches are distributed among these distances:
51 2 0.02
52 20 0.16
53 26 0.20
54 27 0.21
55 52 0.40
56 2 0.02
ACGTcount: A:0.24, C:0.25, G:0.16, T:0.35
Consensus pattern (54 bp):
GAACTTACCAATGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTATA
Found at i:65724931 original size:22 final size:22
Alignment explanation
Indices: 65724904--65724980 Score: 82
Period size: 22 Copynumber: 3.5 Consensus size: 22
65724894 CACTAAGACA
65724904 ACAGGACGGCTCAACACCGTAG
1 ACAGGACGGCTCAACACCGTAG
* * *
65724926 ATAGGACAGCTCAACGCCGTAG
1 ACAGGACGGCTCAACACCGTAG
* * * *
65724948 ACAAGATGACTCAACATCGTAG
1 ACAGGACGGCTCAACACCGTAG
*
65724970 ACAGAACGGCT
1 ACAGGACGGCT
65724981 AAAGGCCGTA
Statistics
Matches: 41, Mismatches: 14, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
22 41 1.00
ACGTcount: A:0.35, C:0.27, G:0.25, T:0.13
Consensus pattern (22 bp):
ACAGGACGGCTCAACACCGTAG
Found at i:65728108 original size:33 final size:33
Alignment explanation
Indices: 65728071--65728141 Score: 90
Period size: 33 Copynumber: 2.2 Consensus size: 33
65728061 CTCAGCCCTC
**
65728071 ATCAG-AATCAATTGGGCCTAGCCCATTCTCAAA
1 ATCAGTAA-CAATTGGGCCTAGCCCATTAACAAA
* *
65728104 ATCAGTAACAGTTGGGCCTAGCCCTTTAACAAA
1 ATCAGTAACAATTGGGCCTAGCCCATTAACAAA
65728137 ATCAG
1 ATCAG
65728142 GTGGGCCTAA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
33 31 0.94
34 2 0.06
ACGTcount: A:0.34, C:0.25, G:0.17, T:0.24
Consensus pattern (33 bp):
ATCAGTAACAATTGGGCCTAGCCCATTAACAAA
Found at i:65728313 original size:22 final size:22
Alignment explanation
Indices: 65728288--65728346 Score: 66
Period size: 22 Copynumber: 2.7 Consensus size: 22
65728278 CACTAAGTCA
*
65728288 ACAGGACGGCTCAATGGC-GTAG
1 ACAGGACGGCTCAA-CGCTGTAG
*
65728310 ACAGGATGGCTCAACGCTGTAG
1 ACAGGACGGCTCAACGCTGTAG
* *
65728332 ATAGGACGGTTCAAC
1 ACAGGACGGCTCAAC
65728347 ATCGTAGATA
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
21 2 0.06
22 29 0.94
ACGTcount: A:0.29, C:0.22, G:0.32, T:0.17
Consensus pattern (22 bp):
ACAGGACGGCTCAACGCTGTAG
Found at i:65730423 original size:19 final size:19
Alignment explanation
Indices: 65730401--65730472 Score: 71
Period size: 19 Copynumber: 3.9 Consensus size: 19
65730391 TCTCGTTTTC
*
65730401 TTTTTTCTTTCTTTTGCTA
1 TTTTTTCTTTCTTTTTCTA
**
65730420 TTTTTGGTTTCTTTTTCTCA
1 TTTTTTCTTTCTTTTTCT-A
65730440 TTTCTTT-TTTCTTTTTC-A
1 TTT-TTTCTTTCTTTTTCTA
65730458 --TTTTCTTTCTTTTTC
1 TTTTTTCTTTCTTTTTC
65730473 AACTTCATTC
Statistics
Matches: 46, Mismatches: 4, Indels: 9
0.78 0.07 0.15
Matches are distributed among these distances:
15 3 0.07
16 11 0.24
18 1 0.02
19 15 0.33
20 14 0.30
21 2 0.04
ACGTcount: A:0.04, C:0.17, G:0.04, T:0.75
Consensus pattern (19 bp):
TTTTTTCTTTCTTTTTCTA
Found at i:65730472 original size:6 final size:6
Alignment explanation
Indices: 65730345--65730465 Score: 52
Period size: 6 Copynumber: 19.3 Consensus size: 6
65730335 GCAATCAAAC
* * * *
65730345 TTTTCT TTTT-A TTTTCA TTTTCA TTTTCA TTTTCT TGTTT-T TCTTCTCT
1 TTTTCT TTTTCT TTTTCT TTTTCT TTTTCT TTTTCT T-TTTCT T-TT-TCT
* * * *
65730394 CGTTTTCT TTTT-T CTTTCT TTTGCT ATTTT-T GGTTTCT TTTTCT CATTTCTT
1 --TTTTCT TTTTCT TTTTCT TTTTCT -TTTTCT -TTTTCT TTTTCT -TTTTC-T
*
65730446 TTTTCT TTTTCA TTTTCT TT
1 TTTTCT TTTTCT TTTTCT TT
65730466 CTTTTTCAAC
Statistics
Matches: 90, Mismatches: 14, Indels: 22
0.71 0.11 0.17
Matches are distributed among these distances:
5 8 0.09
6 58 0.64
7 16 0.18
8 5 0.06
9 2 0.02
10 1 0.01
ACGTcount: A:0.06, C:0.17, G:0.04, T:0.74
Consensus pattern (6 bp):
TTTTCT
Found at i:65730483 original size:16 final size:16
Alignment explanation
Indices: 65730448--65730486 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
65730438 CATTTCTTTT
** *
65730448 TTCTTTTTCATTTTCT
1 TTCTTTTTCAACTTCA
65730464 TTCTTTTTCAACTTCA
1 TTCTTTTTCAACTTCA
65730480 TTCTTTT
1 TTCTTTT
65730487 ATTTTCCTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.10, C:0.21, G:0.00, T:0.69
Consensus pattern (16 bp):
TTCTTTTTCAACTTCA
Found at i:65731856 original size:27 final size:27
Alignment explanation
Indices: 65731797--65731973 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
65731787 TAAATTGTAC
65731797 AGCACTAAGTGTGCG-ATTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
65731823 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
65731849 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGAATTGACTATGT
* *
65731877 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-ATTGACTATGT
* * *
65731905 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
65731932 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
65731959 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
65731974 GACTCAATAT
Statistics
Matches: 129, Mismatches: 18, Indels: 7
0.84 0.12 0.05
Matches are distributed among these distances:
26 14 0.11
27 92 0.71
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAATTGACTATGT
Found at i:65731910 original size:82 final size:80
Alignment explanation
Indices: 65731798--65731952 Score: 222
Period size: 82 Copynumber: 1.9 Consensus size: 80
65731788 AAATTGTACA
* *
65731798 GCACTAAGTGTGCGATTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTGT
1 GCACTAAGTGTGCGATTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTGT
65731862 GCGAATTGACCATGCG
65 GCGAATTGACCATGCG
** *
65731878 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA--TTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
65731943 TGCGAGTTGA
64 TGCGAATTGA
65731953 TTATATAGCA
Statistics
Matches: 66, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
80 15 0.23
82 50 0.76
83 1 0.02
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (80 bp):
GCACTAAGTGTGCGATTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGTG
CGAATTGACCATGCG
Found at i:65731964 original size:82 final size:80
Alignment explanation
Indices: 65731794--65731973 Score: 218
Period size: 82 Copynumber: 2.2 Consensus size: 80
65731784 GATTAAATTG
* *
65731794 TACAGCACTAAGTGTGCGATTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAG
1 TACAGCACTAAGTGTGCGATTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAG
65731859 TGTGCGAATTGACCA
66 TGTGCGAATTGACCA
* * ** *
65731874 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA--TTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
65731938 AAGTGTGCGAGTTGATTA
63 AAGTGTGCGAATTGACCA
* *
65731956 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
65731974 GACTCAATAT
Statistics
Matches: 83, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
80 17 0.20
81 1 0.01
82 65 0.78
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (80 bp):
TACAGCACTAAGTGTGCGATTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAG
TGTGCGAATTGACCA
Found at i:65734607 original size:30 final size:30
Alignment explanation
Indices: 65734573--65734633 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
65734563 TTCCCGAGCC
65734573 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
* * * *
65734603 TAGGGGCAAAATTGTAATTTTTCAAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
65734633 T
1 T
65734634 GAGTTAAGGA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.39, C:0.07, G:0.23, T:0.31
Consensus pattern (30 bp):
TAGGGGCAAAAGTGTAAATATGCAAAAGTT
Found at i:65735291 original size:29 final size:27
Alignment explanation
Indices: 65735251--65735305 Score: 65
Period size: 28 Copynumber: 2.0 Consensus size: 27
65735241 CCGAGCCTAG
65735251 GGGCAAAGTGTAAATATGCAAAAGTTTA
1 GGGCAAAGTGT-AATATGCAAAAGTTTA
* * *
65735279 GGGCAAAATTGTAATTTTCAAAAGTTT
1 GGGC-AAAGTGTAATATGCAAAAGTTT
65735306 GAGTAAGGAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
28 17 0.74
29 6 0.26
ACGTcount: A:0.40, C:0.07, G:0.22, T:0.31
Consensus pattern (27 bp):
GGGCAAAGTGTAATATGCAAAAGTTTA
Found at i:65737955 original size:43 final size:43
Alignment explanation
Indices: 65737891--65738005 Score: 119
Period size: 43 Copynumber: 2.7 Consensus size: 43
65737881 AATTACTGAG
* * *
65737891 ATGTGATTACGTGTAAAACCAT-GTCTGGGAC-AATGGCATC-ATT
1 ATGTGATAACATGTAAGACCATAGT-TGGG-CTAATGGCATCGA-T
* *
65737934 ATGTGATATCATGTAAGACCATAGTTGGGCTATTGGCATCGAT
1 ATGTGATAACATGTAAGACCATAGTTGGGCTAATGGCATCGAT
* *
65737977 ATGTGATAACATGTAAGATCATATTTGGG
1 ATGTGATAACATGTAAGACCATAGTTGGG
65738006 ATATGGAATT
Statistics
Matches: 61, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
42 1 0.02
43 57 0.93
44 3 0.05
ACGTcount: A:0.30, C:0.13, G:0.24, T:0.32
Consensus pattern (43 bp):
ATGTGATAACATGTAAGACCATAGTTGGGCTAATGGCATCGAT
Found at i:65738310 original size:18 final size:18
Alignment explanation
Indices: 65738287--65738328 Score: 75
Period size: 18 Copynumber: 2.3 Consensus size: 18
65738277 ATTTGTATAT
65738287 GGCTTACTAAGCTTGTAA
1 GGCTTACTAAGCTTGTAA
*
65738305 GGCTTACTAAGCTTTTAA
1 GGCTTACTAAGCTTGTAA
65738323 GGCTTA
1 GGCTTA
65738329 TTCTGTGTGT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.21, T:0.36
Consensus pattern (18 bp):
GGCTTACTAAGCTTGTAA
Found at i:65739784 original size:16 final size:16
Alignment explanation
Indices: 65739735--65739784 Score: 82
Period size: 16 Copynumber: 3.1 Consensus size: 16
65739725 AGATAGGACG
*
65739735 TGGTATGTAGATGTAC
1 TGGTATGTAGATGTAA
*
65739751 TAGTATGTAGATGTAA
1 TGGTATGTAGATGTAA
65739767 TGGTATGTAGATGTAA
1 TGGTATGTAGATGTAA
65739783 TG
1 TG
65739785 ACCCTATAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 31 1.00
ACGTcount: A:0.30, C:0.02, G:0.30, T:0.38
Consensus pattern (16 bp):
TGGTATGTAGATGTAA
Found at i:65740194 original size:13 final size:14
Alignment explanation
Indices: 65740176--65740205 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
65740166 CATGCAAATT
65740176 AAAAAG-AAGAAAG
1 AAAAAGAAAGAAAG
65740189 AAAAAGAAAGAAAG
1 AAAAAGAAAGAAAG
65740203 AAA
1 AAA
65740206 GAAAGGTGGG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.38
14 10 0.62
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (14 bp):
AAAAAGAAAGAAAG
Found at i:65740418 original size:28 final size:28
Alignment explanation
Indices: 65740357--65740418 Score: 67
Period size: 27 Copynumber: 2.2 Consensus size: 28
65740347 AAATCGATTA
* *
65740357 AGATTTTAGATATTTGTTATTGTTGAAT
1 AGATTTTAGATATTAGTGATTGTTGAAT
65740385 AG-TTTTAG-TATTAGTGATTTAGTTG-AT
1 AGATTTTAGATATTAGTGA-TT-GTTGAAT
65740412 AGATTTT
1 AGATTTT
65740419 TAAGCTAGAA
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
26 7 0.24
27 12 0.41
28 10 0.34
ACGTcount: A:0.27, C:0.00, G:0.19, T:0.53
Consensus pattern (28 bp):
AGATTTTAGATATTAGTGATTGTTGAAT
Found at i:65744095 original size:19 final size:18
Alignment explanation
Indices: 65744071--65744112 Score: 59
Period size: 17 Copynumber: 2.3 Consensus size: 18
65744061 GGTAGGGGTT
*
65744071 GGGGGTTTGTGGGTGGGGG
1 GGGGGTTTGCGGG-GGGGG
65744090 GGGGG-TTGCGGGGGGGG
1 GGGGGTTTGCGGGGGGGG
65744107 GGGGGT
1 GGGGGT
65744113 CGTTTGGTTG
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
17 10 0.48
18 6 0.29
19 5 0.24
ACGTcount: A:0.00, C:0.02, G:0.79, T:0.19
Consensus pattern (18 bp):
GGGGGTTTGCGGGGGGGG
Found at i:65744106 original size:18 final size:18
Alignment explanation
Indices: 65744071--65744111 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
65744061 GGTAGGGGTT
* * *
65744071 GGGGGTTTGTGGGTGGGG
1 GGGGGGTTGCGGGGGGGG
65744089 GGGGGGTTGCGGGGGGGG
1 GGGGGGTTGCGGGGGGGG
65744107 GGGGG
1 GGGGG
65744112 TCGTTTGGTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.00, C:0.02, G:0.80, T:0.17
Consensus pattern (18 bp):
GGGGGGTTGCGGGGGGGG
Found at i:65746757 original size:18 final size:17
Alignment explanation
Indices: 65746736--65746820 Score: 62
Period size: 18 Copynumber: 4.6 Consensus size: 17
65746726 TTTTCACATC
65746736 CTTTTTCAATCTCAATTT
1 CTTTTTCAATCTC-ATTT
*
65746754 CTTTTTCCATGACACTCATTT
1 CTTTTT-CA--A-TCTCATTT
* * *
65746775 CTTTTACACTCTCGTTT
1 CTTTTTCAATCTCATTT
*
65746792 CTTTCTTCAATCTCACTCT
1 CTTT-TTCAATCTCA-TTT
65746811 CTTTTTCAAT
1 CTTTTTCAAT
65746821 TTCTTGTTCC
Statistics
Matches: 52, Mismatches: 9, Indels: 12
0.71 0.12 0.16
Matches are distributed among these distances:
17 10 0.19
18 19 0.37
19 8 0.15
20 2 0.04
21 10 0.19
22 3 0.06
ACGTcount: A:0.18, C:0.28, G:0.02, T:0.52
Consensus pattern (17 bp):
CTTTTTCAATCTCATTT
Found at i:65747824 original size:30 final size:28
Alignment explanation
Indices: 65747788--65747866 Score: 79
Period size: 30 Copynumber: 2.7 Consensus size: 28
65747778 CTTTTCACTT
65747788 TTTTTTTAACTTGATTTTTTTTTTGCTC-A
1 TTTTTTTAACTT--TTTTTTTTTTGCTCGA
**
65747817 CTTTTTTTTTCTTTCTTTTTTTTTTGCTCGA
1 -TTTTTTTAAC-TT-TTTTTTTTTTGCTCGA
*
65747848 TTTTTTTCACTTTTTTTTT
1 TTTTTTTAACTTTTTTTTT
65747867 GAATTTTTTT
Statistics
Matches: 42, Mismatches: 5, Indels: 6
0.79 0.09 0.11
Matches are distributed among these distances:
28 7 0.17
29 2 0.05
30 30 0.71
31 3 0.07
ACGTcount: A:0.08, C:0.13, G:0.05, T:0.75
Consensus pattern (28 bp):
TTTTTTTAACTTTTTTTTTTTTGCTCGA
Found at i:65747840 original size:14 final size:15
Alignment explanation
Indices: 65747803--65747854 Score: 54
Period size: 15 Copynumber: 3.5 Consensus size: 15
65747793 TTAACTTGAT
65747803 TTTTTTTTTGCTCAC
1 TTTTTTTTTGCTCAC
**
65747818 TTTTTTTTT-CTTTC
1 TTTTTTTTTGCTCAC
65747832 TTTTTTTTTTGCTCGA-
1 -TTTTTTTTTGCTC-AC
65747848 TTTTTTT
1 TTTTTTT
65747855 CACTTTTTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 6
0.75 0.10 0.15
Matches are distributed among these distances:
14 3 0.10
15 25 0.83
16 2 0.07
ACGTcount: A:0.04, C:0.13, G:0.06, T:0.77
Consensus pattern (15 bp):
TTTTTTTTTGCTCAC
Found at i:65747873 original size:11 final size:11
Alignment explanation
Indices: 65747859--65747883 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
65747849 TTTTTTCACT
65747859 TTTTTTTTGAA
1 TTTTTTTTGAA
65747870 TTTTTTTTGAA
1 TTTTTTTTGAA
65747881 TTT
1 TTT
65747884 CGATTTTTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.16, C:0.00, G:0.08, T:0.76
Consensus pattern (11 bp):
TTTTTTTTGAA
Found at i:65749390 original size:20 final size:20
Alignment explanation
Indices: 65749367--65749413 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
65749357 GGGTTAAGAT
**
65749367 TGAGCTGAATTGAGCTTGAG
1 TGAGCTGAATTGAGCTCAAG
* *
65749387 TGAGTTGACTTGAGCTCAAG
1 TGAGCTGAATTGAGCTCAAG
65749407 TGAGCTG
1 TGAGCTG
65749414 GAAACGAGCT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.23, C:0.13, G:0.34, T:0.30
Consensus pattern (20 bp):
TGAGCTGAATTGAGCTCAAG
Found at i:65752650 original size:29 final size:29
Alignment explanation
Indices: 65752617--65752676 Score: 102
Period size: 29 Copynumber: 2.1 Consensus size: 29
65752607 ATAACCAAAC
*
65752617 CTACAAAAACTTTATATCCATAAACCCAT
1 CTACAAAAACTTCATATCCATAAACCCAT
*
65752646 CTACATAAACTTCATATCCATAAACCCAT
1 CTACAAAAACTTCATATCCATAAACCCAT
65752675 CT
1 CT
65752677 TTGAATCCTT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.42, C:0.30, G:0.00, T:0.28
Consensus pattern (29 bp):
CTACAAAAACTTCATATCCATAAACCCAT
Found at i:65752669 original size:15 final size:15
Alignment explanation
Indices: 65752623--65752670 Score: 53
Period size: 15 Copynumber: 3.3 Consensus size: 15
65752613 AAACCTACAA
*
65752623 AAACTTTATATCCAT
1 AAACTTCATATCCAT
* * *
65752638 AAAC-CCATCTACAT
1 AAACTTCATATCCAT
65752652 AAACTTCATATCCAT
1 AAACTTCATATCCAT
65752667 AAAC
1 AAAC
65752671 CCATCTTTGA
Statistics
Matches: 25, Mismatches: 7, Indels: 2
0.74 0.21 0.06
Matches are distributed among these distances:
14 10 0.40
15 15 0.60
ACGTcount: A:0.44, C:0.27, G:0.00, T:0.29
Consensus pattern (15 bp):
AAACTTCATATCCAT
Found at i:65764221 original size:25 final size:25
Alignment explanation
Indices: 65764193--65764312 Score: 206
Period size: 25 Copynumber: 4.8 Consensus size: 25
65764183 CTCTTTTAAT
*
65764193 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTTGGTA
65764218 AACTGGGGCAAAG-CCTTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTT-GGTA
65764243 AACTGGGGCAAAGCCCTTTTTGGTA
1 AACTGGGGCAAAGCCCTTTTTGGTA
*
65764268 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTTGGTA
65764293 AACTGGGGCAAAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
65764313 AGCACTTCCT
Statistics
Matches: 91, Mismatches: 2, Indels: 4
0.94 0.02 0.04
Matches are distributed among these distances:
24 7 0.08
25 77 0.85
26 7 0.08
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.27
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTTGGTA
Found at i:65764550 original size:27 final size:27
Alignment explanation
Indices: 65764520--65764760 Score: 285
Period size: 27 Copynumber: 8.9 Consensus size: 27
65764510 GGCAAATTGG
* * **
65764520 TAATTTTACCCCACAAGGGTACCTCGA
1 TAATTCTACCCTACAAGGGTATTTCGA
* *
65764547 TAATTCTACCCTACAGGGGTATTTCGG
1 TAATTCTACCCTACAAGGGTATTTCGA
*
65764574 TATTTCTACCCTACAAGGGTATTTCGA
1 TAATTCTACCCTACAAGGGTATTTCGA
65764601 TAATTCTACCCTAC-AGGGATATTTC-A
1 TAATTCTACCCTACAAGGG-TATTTCGA
*
65764627 GTAATTCTACCCTAC-AGTGGTATTTCGG
1 -TAATTCTACCCTACAAG-GGTATTTCGA
* *
65764655 TAATTCTTCCCTACAGGGGTATTTC-A
1 TAATTCTACCCTACAAGGGTATTTCGA
*
65764681 GTAATTCTACCCTACAGGGGTATTTCGA
1 -TAATTCTACCCTACAAGGGTATTTCGA
65764709 TAATTCTACCCTAC-AGAGGTATTTCGA
1 TAATTCTACCCTACAAG-GGTATTTCGA
* *
65764736 TAATTTTACCCTACAGGGGTATTTC
1 TAATTCTACCCTACAAGGGTATTTC
65764761 CATATTTTAC
Statistics
Matches: 187, Mismatches: 18, Indels: 18
0.84 0.08 0.08
Matches are distributed among these distances:
26 6 0.03
27 176 0.94
28 5 0.03
ACGTcount: A:0.26, C:0.23, G:0.17, T:0.34
Consensus pattern (27 bp):
TAATTCTACCCTACAAGGGTATTTCGA
Found at i:65764655 original size:81 final size:81
Alignment explanation
Indices: 65764543--65764760 Score: 325
Period size: 81 Copynumber: 2.7 Consensus size: 81
65764533 CAAGGGTACC
* *
65764543 TCGATAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTC-GATAATTC
1 TCGATAATTCTACCCTACAGAGGTATTTCGGTATTTCTACCCTACAGGGGTATTTCAG-TAATTC
65764607 TACCCTACAGGGATATT
65 TACCCTACAGGGATATT
* * *
65764624 TC-AGTAATTCTACCCTACAGTGGTATTTCGGTAATTCTTCCCTACAGGGGTATTTCAGTAATTC
1 TCGA-TAATTCTACCCTACAGAGGTATTTCGGTATTTCTACCCTACAGGGGTATTTCAGTAATTC
*
65764688 TACCCTACAGGGGTATT
65 TACCCTACAGGGATATT
*
65764705 TCGATAATTCTACCCTACAGAGGTATTTCGATAATTT-TACCCTACAGGGGTATTTC
1 TCGATAATTCTACCCTACAGAGGTATTTCGGT-ATTTCTACCCTACAGGGGTATTTC
65764761 CATATTTTAC
Statistics
Matches: 124, Mismatches: 9, Indels: 8
0.88 0.06 0.06
Matches are distributed among these distances:
80 1 0.01
81 118 0.95
82 5 0.04
ACGTcount: A:0.25, C:0.22, G:0.17, T:0.35
Consensus pattern (81 bp):
TCGATAATTCTACCCTACAGAGGTATTTCGGTATTTCTACCCTACAGGGGTATTTCAGTAATTCT
ACCCTACAGGGATATT
Found at i:65764810 original size:27 final size:27
Alignment explanation
Indices: 65764695--65764905 Score: 162
Period size: 27 Copynumber: 7.9 Consensus size: 27
65764685 TTCTACCCTA
* **
65764695 CAGGGGTATTTCGATAATTCTAC-CCT
1 CAGGGGTATTTCGATAATTTTACAAAT
* **
65764721 ACAGAGGTATTTCGATAATTTTAC-CCT
1 -CAGGGGTATTTCGATAATTTTACAAAT
*
65764748 ACAGGGGTATTTCCAT-ATTTTACAAAT
1 -CAGGGGTATTTCGATAATTTTACAAAT
* *
65764775 C-GAGAGTATTTCGATAATTTCACAAAT
1 CAG-GGGTATTTCGATAATTTTACAAAT
* * * **
65764802 CAGGGGTATTTTGGTAATTTTCCAAGC
1 CAGGGGTATTTCGATAATTTTACAAAT
* * *
65764829 CAGGGGTATTTTGGTAATTTTACAAAC
1 CAGGGGTATTTCGATAATTTTACAAAT
* *
65764856 CAGGGGTATTT-TAGTAATTTTACAAAC
1 CAGGGGTATTTCGA-TAATTTTACAAAT
* *
65764883 CAGGGGTATTTTGGTAATTTTAC
1 CAGGGGTATTTCGATAATTTTAC
65764906 TGATCGAGGG
Statistics
Matches: 156, Mismatches: 22, Indels: 12
0.82 0.12 0.06
Matches are distributed among these distances:
25 1 0.01
26 18 0.12
27 136 0.87
28 1 0.01
ACGTcount: A:0.29, C:0.15, G:0.19, T:0.37
Consensus pattern (27 bp):
CAGGGGTATTTCGATAATTTTACAAAT
Found at i:65764916 original size:27 final size:27
Alignment explanation
Indices: 65764780--65764957 Score: 214
Period size: 27 Copynumber: 6.6 Consensus size: 27
65764770 CAAATCGAGA
* * * *
65764780 GTATTTCGATAATTTCACAAATCAGGG
1 GTATTTTGGTAATTTTACAAACCAGGG
* *
65764807 GTATTTTGGTAATTTTCCAAGCCAGGG
1 GTATTTTGGTAATTTTACAAACCAGGG
65764834 GTATTTTGGTAATTTTACAAACCAGGG
1 GTATTTTGGTAATTTTACAAACCAGGG
*
65764861 GTATTTTAGTAATTTTACAAACCAGGG
1 GTATTTTGGTAATTTTACAAACCAGGG
** *
65764888 GTATTTTGGTAATTTTACTGATC-GAGG
1 GTATTTTGGTAATTTTACAAACCAG-GG
** *
65764915 GTATTTTGGTAATTTTGTAAACCAAGG
1 GTATTTTGGTAATTTTACAAACCAGGG
*
65764942 GTATTTTAGTAATTTT
1 GTATTTTGGTAATTTT
65764958 GTAAATCGAG
Statistics
Matches: 129, Mismatches: 20, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
26 1 0.01
27 128 0.99
ACGTcount: A:0.28, C:0.10, G:0.21, T:0.40
Consensus pattern (27 bp):
GTATTTTGGTAATTTTACAAACCAGGG
Found at i:65764969 original size:27 final size:26
Alignment explanation
Indices: 65764805--65764989 Score: 163
Period size: 27 Copynumber: 6.9 Consensus size: 26
65764795 CACAAATCAG
** *
65764805 GGGTATTTTGGTAATTTTCCAAGCCA
1 GGGTATTTTGGTAATTTTATAAACCA
*
65764831 GGGGTATTTTGGTAATTTTACAAACCA
1 -GGGTATTTTGGTAATTTTATAAACCA
* *
65764858 GGGGTATTTTAGTAATTTTACAAACCA
1 -GGGTATTTTGGTAATTTTATAAACCA
* * *
65764885 GGGGTATTTTGGTAATTTTACTGATCGA
1 -GGGTATTTTGGTAATTTTA-TAAACCA
*
65764913 GGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTATAAACC-A
* * *
65764940 GGGTATTTTAGTAATTTTGTAAATCGA
1 GGGTATTTTGGTAATTTTATAAA-CCA
*** *
65764967 GGGTAAAATGGTAATTCTATAAA
1 GGGTATTTTGGTAATTTTATAAA
65764990 TTGAGGGTAA
Statistics
Matches: 135, Mismatches: 20, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
26 3 0.02
27 128 0.95
28 4 0.03
ACGTcount: A:0.30, C:0.09, G:0.23, T:0.39
Consensus pattern (26 bp):
GGGTATTTTGGTAATTTTATAAACCA
Found at i:65764971 original size:81 final size:81
Alignment explanation
Indices: 65764789--65764957 Score: 241
Period size: 81 Copynumber: 2.1 Consensus size: 81
65764779 AGTATTTCGA
* *
65764789 TAATTTCACAAATCAGGGGTATTTTGGTAATTTTCCAAGCCAGGGGTATTTTGGTAATTTTACAA
1 TAATTTTACAAACCAGGGGTATTTTGGTAATTTTCCAAGCCAGGGGTATTTTGGTAATTTTACAA
*
65764854 ACCAGGGGTATTTTAG
66 ACCAAGGGTATTTTAG
** * * **
65764870 TAATTTTACAAACCAGGGGTATTTTGGTAATTTTACTGATCGA-GGGTATTTTGGTAATTTTGTA
1 TAATTTTACAAACCAGGGGTATTTTGGTAATTTT-CCAAGCCAGGGGTATTTTGGTAATTTTACA
65764934 AACCAAGGGTATTTTAG
65 AACCAAGGGTATTTTAG
65764951 TAATTTT
1 TAATTTT
65764958 GTAAATCGAG
Statistics
Matches: 78, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
81 74 0.95
82 4 0.05
ACGTcount: A:0.28, C:0.10, G:0.21, T:0.40
Consensus pattern (81 bp):
TAATTTTACAAACCAGGGGTATTTTGGTAATTTTCCAAGCCAGGGGTATTTTGGTAATTTTACAA
ACCAAGGGTATTTTAG
Found at i:65764979 original size:81 final size:81
Alignment explanation
Indices: 65764832--65764982 Score: 205
Period size: 81 Copynumber: 1.9 Consensus size: 81
65764822 TCCAAGCCAG
* ***
65764832 GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGG
1 GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTACAAACCAGGGGTAAAATGG
65764897 TAATTTTACTGATCGA
66 TAATTTTACTGATCGA
** ** *
65764913 GGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTGTAAATC-GAGGGTAAAATG
1 GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTACAAACCAG-GGGTAAAATG
65764977 GTAATT
65 GTAATT
65764983 CTATAAATTG
Statistics
Matches: 60, Mismatches: 9, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
80 1 0.02
81 59 0.98
ACGTcount: A:0.30, C:0.07, G:0.23, T:0.40
Consensus pattern (81 bp):
GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTACAAACCAGGGGTAAAATGG
TAATTTTACTGATCGA
Found at i:65764990 original size:27 final size:27
Alignment explanation
Indices: 65764950--65765133 Score: 224
Period size: 27 Copynumber: 6.8 Consensus size: 27
65764940 GGGTATTTTA
* * *
65764950 GTAATTTTGTAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAACG
*
65764977 GTAATTCTATAAATTGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
* *
65765004 ATAATTCTATAAATCGAGGATAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
* * *
65765031 ATAATTCTATAAATTGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAACG
* * *
65765058 GTAATTTTATAAATTGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAACG
* * *
65765085 GTAATTTTGTAAATCGAGGGTAAAACA
1 GTAATTCTATAAATCGAGGGTAAAACG
*
65765112 ATAATTCTATAAATCGAGGGTA
1 GTAATTCTATAAATCGAGGGTA
65765134 CTTTGGTAAT
Statistics
Matches: 138, Mismatches: 19, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 138 1.00
ACGTcount: A:0.42, C:0.06, G:0.21, T:0.32
Consensus pattern (27 bp):
GTAATTCTATAAATCGAGGGTAAAACG
Found at i:65765009 original size:81 final size:83
Alignment explanation
Indices: 65764959--65765158 Score: 264
Period size: 81 Copynumber: 2.5 Consensus size: 83
65764949 AGTAATTTTG
* *
65764959 TAAATCGAGGGTAAAATGGTAATTCTATAAATTGAGGGTAAAACGATAATTCTATAAATCGA-GG
1 TAAATCGAGGGTAAAATGGTAATTCTATAAATTGAGGGTAAAACGATAATTTTGTAAATCGAGGG
65765023 -ATAAAACGATAATTCTA
66 TATAAAACGATAATTCTA
* * * *
65765040 TAAATTGAGGGTAAAATGGTAATTTTATAAATTGAGGGTAAAATGGTAATTTTGTAAATCGAGGG
1 TAAATCGAGGGTAAAATGGTAATTCTATAAATTGAGGGTAAAACGATAATTTTGTAAATCGAGGG
*
65765105 --TAAAACAATAATTCTA
66 TATAAAACGATAATTCTA
*** * *
65765121 TAAATCGAGGGTACTTTGGTAATTTTACAAATTGAGGG
1 TAAATCGAGGGTAAAATGGTAATTCTATAAATTGAGGG
65765159 CATTTCAGTA
Statistics
Matches: 106, Mismatches: 12, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
81 104 0.98
82 2 0.02
ACGTcount: A:0.41, C:0.07, G:0.21, T:0.32
Consensus pattern (83 bp):
TAAATCGAGGGTAAAATGGTAATTCTATAAATTGAGGGTAAAACGATAATTTTGTAAATCGAGGG
TATAAAACGATAATTCTA
Found at i:65765143 original size:27 final size:27
Alignment explanation
Indices: 65764950--65765158 Score: 220
Period size: 27 Copynumber: 7.7 Consensus size: 27
65764940 GGGTATTTTA
*
65764950 GTAATTTTGTAAATCGAGGGTAAAATG
1 GTAATTTTATAAATCGAGGGTAAAATG
* * *
65764977 GTAATTCTATAAATTGAGGGTAAAACG
1 GTAATTTTATAAATCGAGGGTAAAATG
* * * *
65765004 ATAATTCTATAAATCGAGGATAAAACG
1 GTAATTTTATAAATCGAGGGTAAAATG
* * *
65765031 ATAATTCTATAAATTGAGGGTAAAATG
1 GTAATTTTATAAATCGAGGGTAAAATG
*
65765058 GTAATTTTATAAATTGAGGGTAAAATG
1 GTAATTTTATAAATCGAGGGTAAAATG
* **
65765085 GTAATTTTGTAAATCGAGGGTAAAACA
1 GTAATTTTATAAATCGAGGGTAAAATG
* * ***
65765112 ATAATTCTATAAATCGAGGGTACTTTG
1 GTAATTTTATAAATCGAGGGTAAAATG
* *
65765139 GTAATTTTACAAATTGAGGG
1 GTAATTTTATAAATCGAGGG
65765159 CATTTCAGTA
Statistics
Matches: 154, Mismatches: 28, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 154 1.00
ACGTcount: A:0.40, C:0.06, G:0.21, T:0.33
Consensus pattern (27 bp):
GTAATTTTATAAATCGAGGGTAAAATG
Found at i:65767867 original size:43 final size:43
Alignment explanation
Indices: 65767762--65767867 Score: 117
Period size: 43 Copynumber: 2.5 Consensus size: 43
65767752 ATATCCTAGA
* * * *
65767762 TATGATCTTACATGTTATCACATATCGATTCCAATAGCCAAGC
1 TATGGTCTTACATGTAATCACATAACGATGCCAATAGCCAAGC
* *
65767805 TATGGTCTTACATGAAATCACATAACGATGCCAAT-GTCCCAGAC
1 TATGGTCTTACATGTAATCACATAACGATGCCAATAG-CCAAG-C
*
65767849 -ATGGTCTTACACGTAATCA
1 TATGGTCTTACATGTAATCA
65767868 TATCTCGATA
Statistics
Matches: 53, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
42 1 0.02
43 51 0.96
44 1 0.02
ACGTcount: A:0.33, C:0.24, G:0.14, T:0.29
Consensus pattern (43 bp):
TATGGTCTTACATGTAATCACATAACGATGCCAATAGCCAAGC
Found at i:65769126 original size:14 final size:15
Alignment explanation
Indices: 65769101--65769129 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
65769091 AAAAAGTATA
65769101 GAAAAGATAAAAAAT
1 GAAAAGATAAAAAAT
65769116 GAAAA-ATAAAAAAT
1 GAAAAGATAAAAAAT
65769130 ATTCTGTAGG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.76, C:0.00, G:0.10, T:0.14
Consensus pattern (15 bp):
GAAAAGATAAAAAAT
Found at i:65771909 original size:40 final size:40
Alignment explanation
Indices: 65771846--65772049 Score: 220
Period size: 40 Copynumber: 5.1 Consensus size: 40
65771836 CGAAATTTAA
** *
65771846 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
65771886 CCGGTTATAGTAACTTGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
65771926 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
65771965 CC-GAAATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
65772005 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
65772045 CCGGA
1 CCGGA
65772050 CATCATTCGA
Statistics
Matches: 137, Mismatches: 20, Indels: 14
0.80 0.12 0.08
Matches are distributed among these distances:
38 4 0.03
39 30 0.22
40 89 0.65
41 14 0.10
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:65772009 original size:79 final size:80
Alignment explanation
Indices: 65771867--65772047 Score: 208
Period size: 79 Copynumber: 2.3 Consensus size: 80
65771857 TACTCGTTCA
* ** *
65771867 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTTGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACTTAGCCCGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
* *
65771932 TTAGTAAC-TCGCACC
66 ATAGTAACTTAGCA-C
**
65771947 AATGCCTTCGGG-CTTAGCCCGAA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACTTAGCCCGAATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
* *
65772009 ATATGGTCACTTAGCAC
64 ATATAGTAACTTAGCAC
*
65772026 AAAGCCTTCGGGACTTAGCCCG
1 AATGCCTTCGGGACTTAGCCCG
65772048 GACATCATTC
Statistics
Matches: 86, Mismatches: 11, Indels: 8
0.82 0.10 0.08
Matches are distributed among these distances:
78 4 0.05
79 57 0.66
80 25 0.29
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (80 bp):
AATGCCTTCGGGACTTAGCCCGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
ATAGTAACTTAGCAC
Found at i:65773342 original size:24 final size:25
Alignment explanation
Indices: 65773289--65773345 Score: 73
Period size: 24 Copynumber: 2.4 Consensus size: 25
65773279 AGGATGGACA
*
65773289 CATTT-TTTTTCTTTTGTTTTCATC
1 CATTTCTTTCTCTTTTGTTTTCATC
* *
65773313 CTTTTCTTTCTCTTTTTTTTTC-TC
1 CATTTCTTTCTCTTTTGTTTTCATC
65773337 CATTTCTTT
1 CATTTCTTT
65773346 ATTACTAACT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
24 14 0.50
25 14 0.50
ACGTcount: A:0.05, C:0.21, G:0.02, T:0.72
Consensus pattern (25 bp):
CATTTCTTTCTCTTTTGTTTTCATC
Found at i:65775852 original size:24 final size:24
Alignment explanation
Indices: 65775764--65775864 Score: 150
Period size: 24 Copynumber: 4.2 Consensus size: 24
65775754 AAGTCTGTCA
*
65775764 GGAGAGGATTTAGGAGTTGATAAG
1 GGAGAGGATTTAGGAGCTGATAAG
* *
65775788 GGATAGGATTTAGGAGTTGATAAG
1 GGAGAGGATTTAGGAGCTGATAAG
*
65775812 GGATAGGATTTAGGAGCTGATAAG
1 GGAGAGGATTTAGGAGCTGATAAG
65775836 GGAGAGGATTTAGGAGCTGAGT-AG
1 GGAGAGGATTTAGGAGCTGA-TAAG
65775860 GGAGA
1 GGAGA
65775865 ACAGTGTTGG
Statistics
Matches: 73, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
24 72 0.99
25 1 0.01
ACGTcount: A:0.33, C:0.02, G:0.42, T:0.24
Consensus pattern (24 bp):
GGAGAGGATTTAGGAGCTGATAAG
Found at i:65777353 original size:54 final size:53
Alignment explanation
Indices: 65777269--65777379 Score: 150
Period size: 54 Copynumber: 2.1 Consensus size: 53
65777259 AGGAAGCGTC
* *
65777269 CTGGTGGCTATGCCACATTTATCTGATCTGGTGGCTATGCCACATATATTTATT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTATGCCACAT-TATTTATT
* * * * *
65777323 CTGGTGGCTTTGCCACAATTATCTGTTCTGGTGACTCTGTCACATTATTTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTATGCCACATTATTTATT
65777376 CTGG
1 CTGG
65777380 CAGCAATACT
Statistics
Matches: 50, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
53 11 0.22
54 39 0.78
ACGTcount: A:0.17, C:0.21, G:0.22, T:0.41
Consensus pattern (53 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTATGCCACATTATTTATT
Found at i:65777376 original size:26 final size:26
Alignment explanation
Indices: 65777269--65777379 Score: 123
Period size: 27 Copynumber: 4.2 Consensus size: 26
65777259 AGGAAGCGTC
* *
65777269 CTGGTGGCTATGCCACATTTATCTGAT
1 CTGGTGGCTATGCCACA-TTATTTGTT
*
65777296 CTGGTGGCTATGCCACATATATTTATT
1 CTGGTGGCTATGCCACAT-TATTTGTT
* *
65777323 CTGGTGGCTTTGCCACAATTATCTGTT
1 CTGGTGGCTATGCCAC-ATTATTTGTT
* * *
65777350 CTGGTGACTCTGTCACATTATTTGTT
1 CTGGTGGCTATGCCACATTATTTGTT
65777376 CTGG
1 CTGG
65777380 CAGCAATACT
Statistics
Matches: 72, Mismatches: 10, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
26 14 0.19
27 56 0.78
28 2 0.03
ACGTcount: A:0.17, C:0.21, G:0.22, T:0.41
Consensus pattern (26 bp):
CTGGTGGCTATGCCACATTATTTGTT
Found at i:65779872 original size:31 final size:31
Alignment explanation
Indices: 65779837--65780000 Score: 301
Period size: 31 Copynumber: 5.3 Consensus size: 31
65779827 ATATTTGGCT
*
65779837 GAAGCCTTTCCATAAATCATATCACTGGGCC
1 GAAGCCTTTTCATAAATCATATCACTGGGCC
65779868 GAAGCCTTTTCATAAATCATATCACTGGGCC
1 GAAGCCTTTTCATAAATCATATCACTGGGCC
65779899 GAAGCCTTTTCATAAATCATATCACTGGGCC
1 GAAGCCTTTTCATAAATCATATCACTGGGCC
* *
65779930 GAAGCCTTTTCATAAATCATATCACTGAGTC
1 GAAGCCTTTTCATAAATCATATCACTGGGCC
65779961 GAAGCCTTTTCATAAATCATATCACTGGGCC
1 GAAGCCTTTTCATAAATCATATCACTGGGCC
65779992 GAAGCCTTT
1 GAAGCCTTT
65780001 ACTCTAAACA
Statistics
Matches: 128, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 128 1.00
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.29
Consensus pattern (31 bp):
GAAGCCTTTTCATAAATCATATCACTGGGCC
Done.