Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 205 of 349
Found at i:66088252 original size:26 final size:27
Alignment explanation
Indices: 66088223--66088282 Score: 68
Period size: 27 Copynumber: 2.3 Consensus size: 27
66088213 CCACATATAT
* *
66088223 ATATCTG-TTCTGGTGGCCTAGCCACA
1 ATATCTGAATCTGGTGACCTAGCCACA
* * *
66088249 ATATCTGAATCTGGTGACTTCGTCACA
1 ATATCTGAATCTGGTGACCTAGCCACA
66088276 ATATCTG
1 ATATCTG
66088283 GCAGCCTCGC
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.23, C:0.23, G:0.20, T:0.33
Consensus pattern (27 bp):
ATATCTGAATCTGGTGACCTAGCCACA
Found at i:66093030 original size:45 final size:43
Alignment explanation
Indices: 66092978--66093110 Score: 126
Period size: 45 Copynumber: 3.0 Consensus size: 43
66092968 GTAAGCAAAC
*
66092978 ATCGATGCCACTATCCCAGACAGGGTCTTACAC-AAAATTAGATAA
1 ATCGATGCCAC-ATCCCAGACAGGGTCTTACACGAAAA--ACATAA
* * *
66093023 ATCGATGCCAACGTCCCAGACATGGTCTTACACGTAAAACATAA
1 ATCGATGCC-ACATCCCAGACAGGGTCTTACACGAAAAACATAA
* * *
66093067 ATCGATGCCAACGTCCCAGA-TGTGGTCTTACACGGAAACACATA
1 ATCGATGCC-ACATCCCAGACAG-GGTCTTACAC-GAAAAACATA
66093111 TCGGATCCTA
Statistics
Matches: 76, Mismatches: 8, Indels: 8
0.83 0.09 0.09
Matches are distributed among these distances:
44 35 0.46
45 36 0.47
46 5 0.07
ACGTcount: A:0.35, C:0.26, G:0.17, T:0.21
Consensus pattern (43 bp):
ATCGATGCCACATCCCAGACAGGGTCTTACACGAAAAACATAA
Found at i:66093081 original size:44 final size:45
Alignment explanation
Indices: 66092978--66093110 Score: 155
Period size: 44 Copynumber: 3.0 Consensus size: 45
66092968 GTAAGCAAAC
* * * *
66092978 ATCGATGCC-ACTATCCCAGACAGGGTCTTACAC-AAAATTAGATAA
1 ATCGATGCCAAC-GTCCCAGACATGGTCTTACACGTAAA-TACATAA
66093023 ATCGATGCCAACGTCCCAGACATGGTCTTACACGTAAA-ACATAA
1 ATCGATGCCAACGTCCCAGACATGGTCTTACACGTAAATACATAA
** * *
66093067 ATCGATGCCAACGTCCCAGATGTGGTCTTACACGGAAACACATA
1 ATCGATGCCAACGTCCCAGACATGGTCTTACACGTAAATACATA
66093111 TCGGATCCTA
Statistics
Matches: 78, Mismatches: 7, Indels: 6
0.86 0.08 0.07
Matches are distributed among these distances:
44 40 0.51
45 33 0.42
46 5 0.06
ACGTcount: A:0.35, C:0.26, G:0.17, T:0.21
Consensus pattern (45 bp):
ATCGATGCCAACGTCCCAGACATGGTCTTACACGTAAATACATAA
Found at i:66093518 original size:8 final size:8
Alignment explanation
Indices: 66093505--66093534 Score: 51
Period size: 8 Copynumber: 3.6 Consensus size: 8
66093495 AGTCTCTCAT
66093505 TCACAAAA
1 TCACAAAA
66093513 TCACAAAA
1 TCACAAAA
66093521 TCACAAAA
1 TCACAAAA
66093529 TACACA
1 T-CACA
66093535 TAATTTGCTT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 17 0.81
9 4 0.19
ACGTcount: A:0.60, C:0.27, G:0.00, T:0.13
Consensus pattern (8 bp):
TCACAAAA
Found at i:66095877 original size:42 final size:41
Alignment explanation
Indices: 66095713--66095879 Score: 138
Period size: 42 Copynumber: 4.0 Consensus size: 41
66095703 AATCATACCA
* * *
66095713 ATGCCATATCCCAGATATGGTCTTACATGGGATCTCATATA-G
1 ATGCCATATCCCAGATATGGTCTTACA-CGAAACTCATA-ACG
* ** ** * *
66095755 ATGCCAATAACCCACCTATGGTCTTACACGATTCTCATATCA
1 ATGCC-ATATCCCAGATATGGTCTTACACGAAACTCATAACG
* * * *
66095797 ATGCCATGTCCCAGACATGGTCTTACACAAAATATCATAACG
1 ATGCCATATCCCAGATATGGTCTTACACGAAA-CTCATAACG
* *
66095839 AGGTCATATCCCAGATATGGTCTTACACGTAAACTCATAAC
1 ATGCCATATCCCAGATATGGTCTTACACG-AAACTCATAAC
66095880 CCTAATGTCA
Statistics
Matches: 96, Mismatches: 25, Indels: 8
0.74 0.19 0.06
Matches are distributed among these distances:
41 19 0.20
42 55 0.57
43 22 0.23
ACGTcount: A:0.32, C:0.26, G:0.14, T:0.28
Consensus pattern (41 bp):
ATGCCATATCCCAGATATGGTCTTACACGAAACTCATAACG
Found at i:66100565 original size:49 final size:47
Alignment explanation
Indices: 66100332--66100693 Score: 523
Period size: 47 Copynumber: 7.6 Consensus size: 47
66100322 CCCTTCGGGA
* * *
66100332 CTTATCACATTTATACACTTCCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
66100379 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
66100426 CTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
66100473 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
*
66100520 CTTATCACATATATATACACTTTCACATTCATCACATTGGTCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * * *
66100569 CTTATCACATATATAAACTTTCACATTCATCACA-TCGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
66100615 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
66100662 CTTATCACATATATATACACTTTCACATTCAT
1 CTTATCAC--ATATATACACTTTCACATTCAT
66100694 TCAAATATAC
Statistics
Matches: 287, Mismatches: 21, Indels: 12
0.90 0.07 0.04
Matches are distributed among these distances:
46 42 0.15
47 180 0.63
49 64 0.22
50 1 0.00
ACGTcount: A:0.28, C:0.29, G:0.08, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:66104957 original size:61 final size:61
Alignment explanation
Indices: 66104838--66104957 Score: 145
Period size: 60 Copynumber: 2.0 Consensus size: 61
66104828 CTATTTAGAA
* * *
66104838 ATCAGAGTTAACTGGGCCTTAGCCCATATCAATATTAATCTGGGCCATAGCCCCTTACAGT
1 ATCAGAGTTAACTGGGCCTTAGCCCATATCAATATCAATCTGGGCCATAACCCATTACAGT
* * **
66104899 ATCAGAG-TATACTGGGCC-TAGCCCATATCAGTGTCAATCTGGGCTGTAACCCTATTACA
1 ATCAGAGTTA-ACTGGGCCTTAGCCCATATCAATATCAATCTGGGCCATAACCC-ATTACA
66104958 AGTCGAGATA
Statistics
Matches: 50, Mismatches: 7, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
60 30 0.60
61 20 0.40
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.28
Consensus pattern (61 bp):
ATCAGAGTTAACTGGGCCTTAGCCCATATCAATATCAATCTGGGCCATAACCCATTACAGT
Found at i:66105031 original size:19 final size:20
Alignment explanation
Indices: 66104989--66105032 Score: 54
Period size: 19 Copynumber: 2.2 Consensus size: 20
66104979 CCATATTAAC
** *
66104989 ACAGTTGGGCCCATTTCAAT
1 ACAGTTGGGCCCATAACAAA
66105009 ACAGTT-GGCCCATAACAAA
1 ACAGTTGGGCCCATAACAAA
66105028 ACAGT
1 ACAGT
66105033 CTCATATGAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 15 0.71
20 6 0.29
ACGTcount: A:0.34, C:0.25, G:0.18, T:0.23
Consensus pattern (20 bp):
ACAGTTGGGCCCATAACAAA
Found at i:66109803 original size:40 final size:40
Alignment explanation
Indices: 66109748--66109967 Score: 280
Period size: 40 Copynumber: 5.5 Consensus size: 40
66109738 TATTCGGATG
66109748 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* *
66109788 ATATCCGGGCTAAGTCCCGAAGGAATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-A--AGTTACT
* * *
66109831 ATACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
** * *
66109871 ATATCCGGGCTAAGTCCCGAAGGCATTCATGCCAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * * *
66109911 GTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
66109951 ATATCC-GGCTAAATCCC
1 ATATCCGGGCTAAGTCCC
66109968 AAAGATACTT
Statistics
Matches: 156, Mismatches: 21, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
39 9 0.06
40 110 0.71
41 1 0.01
43 36 0.23
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Found at i:66109891 original size:83 final size:80
Alignment explanation
Indices: 66109749--66109967 Score: 282
Period size: 83 Copynumber: 2.7 Consensus size: 80
66109739 ATTCGGATGA
*
66109749 TATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGAAT
1 TATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGAAT
** * *
66109814 TTGTGCGAGT-AGTTG
66 TCATGCCAGTGA-CTG
*
66109829 CTATACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGG
1 -TAT--CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGG
*
66109894 CATTCATGCCAGTGACTG
63 AATTCATGCCAGTGACTG
* * *
66109912 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATATCC-GGCTAAATCCC
1 TATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAG-TGACTATATCCGGGCTAAGTCCC
66109968 AAAGATACTT
Statistics
Matches: 124, Mismatches: 10, Indels: 10
0.86 0.07 0.07
Matches are distributed among these distances:
79 10 0.08
80 37 0.30
81 5 0.04
82 3 0.02
83 68 0.55
84 1 0.01
ACGTcount: A:0.23, C:0.24, G:0.27, T:0.26
Consensus pattern (80 bp):
TATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGAAT
TCATGCCAGTGACTG
Found at i:66114018 original size:25 final size:26
Alignment explanation
Indices: 66113952--66114019 Score: 66
Period size: 25 Copynumber: 2.6 Consensus size: 26
66113942 TCATAATTCG
66113952 TCATCAAACATCATAAAACACAAATAT
1 TCATCAAA-ATCATAAAACACAAATAT
**** **
66113979 TCATCAATGGAATAATTCA-AAATAT
1 TCATCAAAATCATAAAACACAAATAT
66114004 TCATCAAAATCATAAA
1 TCATCAAAATCATAAA
66114020 TTCTAGCATG
Statistics
Matches: 30, Mismatches: 11, Indels: 2
0.70 0.26 0.05
Matches are distributed among these distances:
25 17 0.57
26 6 0.20
27 7 0.23
ACGTcount: A:0.53, C:0.18, G:0.03, T:0.26
Consensus pattern (26 bp):
TCATCAAAATCATAAAACACAAATAT
Found at i:66117102 original size:17 final size:18
Alignment explanation
Indices: 66117072--66117105 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
66117062 AGCAACTCAT
66117072 TTATTAATCTAAGATGAG
1 TTATTAATCTAAGATGAG
66117090 TTATTAA-CTAAGATGA
1 TTATTAATCTAAGATGA
66117106 ACTCAATTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.41, C:0.06, G:0.15, T:0.38
Consensus pattern (18 bp):
TTATTAATCTAAGATGAG
Found at i:66117116 original size:19 final size:19
Alignment explanation
Indices: 66117092--66117143 Score: 88
Period size: 19 Copynumber: 2.7 Consensus size: 19
66117082 AAGATGAGTT
66117092 ATTAACTAAGATGAACTCA
1 ATTAACTAAGATGAACTCA
66117111 ATTAACTGAA-ATGAACTCA
1 ATTAACT-AAGATGAACTCA
66117130 ATTAACTAAGATGA
1 ATTAACTAAGATGA
66117144 GTAATTTATT
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
18 2 0.06
19 27 0.87
20 2 0.06
ACGTcount: A:0.48, C:0.13, G:0.12, T:0.27
Consensus pattern (19 bp):
ATTAACTAAGATGAACTCA
Found at i:66118372 original size:23 final size:23
Alignment explanation
Indices: 66118346--66118439 Score: 125
Period size: 23 Copynumber: 4.1 Consensus size: 23
66118336 AAGTTAGAAG
*
66118346 AGTGAAGAGACTTGAATATGAAA
1 AGTGAAAAGACTTGAATATGAAA
* *
66118369 AGTGAAAAAACTTGAATATGAAT
1 AGTGAAAAGACTTGAATATGAAA
* *
66118392 AGTGAAGAGACTTGAAGATGAAA
1 AGTGAAAAGACTTGAATATGAAA
* *
66118415 AGTTAAAAGGCTTGAATATGAAA
1 AGTGAAAAGACTTGAATATGAAA
66118438 AG
1 AG
66118440 ATACACACAT
Statistics
Matches: 60, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 60 1.00
ACGTcount: A:0.49, C:0.04, G:0.24, T:0.22
Consensus pattern (23 bp):
AGTGAAAAGACTTGAATATGAAA
Found at i:66118413 original size:46 final size:46
Alignment explanation
Indices: 66118346--66118436 Score: 146
Period size: 46 Copynumber: 2.0 Consensus size: 46
66118336 AAGTTAGAAG
*
66118346 AGTGAAGAGACTTGAATATGAAAAGTGAAAAAACTTGAATATGAAT
1 AGTGAAGAGACTTGAAGATGAAAAGTGAAAAAACTTGAATATGAAT
* **
66118392 AGTGAAGAGACTTGAAGATGAAAAGTTAAAAGGCTTGAATATGAA
1 AGTGAAGAGACTTGAAGATGAAAAGTGAAAAAACTTGAATATGAA
66118437 AAGATACACA
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 41 1.00
ACGTcount: A:0.48, C:0.04, G:0.24, T:0.23
Consensus pattern (46 bp):
AGTGAAGAGACTTGAAGATGAAAAGTGAAAAAACTTGAATATGAAT
Found at i:66122877 original size:23 final size:23
Alignment explanation
Indices: 66122851--66122944 Score: 134
Period size: 23 Copynumber: 4.1 Consensus size: 23
66122841 AAGTTAGAAG
66122851 AGTGAAGAGACTTGAATATGAAA
1 AGTGAAGAGACTTGAATATGAAA
* * *
66122874 AGTGAAAAAACTTGAATATGAAT
1 AGTGAAGAGACTTGAATATGAAA
*
66122897 AGTGAAGAGACTTGAAGATGAAA
1 AGTGAAGAGACTTGAATATGAAA
* *
66122920 AGTTAAGAGGCTTGAATATGAAA
1 AGTGAAGAGACTTGAATATGAAA
66122943 AG
1 AG
66122945 ATACACACAT
Statistics
Matches: 61, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 61 1.00
ACGTcount: A:0.48, C:0.04, G:0.26, T:0.22
Consensus pattern (23 bp):
AGTGAAGAGACTTGAATATGAAA
Found at i:66125148 original size:29 final size:29
Alignment explanation
Indices: 66125085--66125152 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
66125075 TAATCAACCG
66125085 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
66125114 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
66125143 CGCACACTTA
1 CGCACACTTA
66125153 CCTTTTCCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:66125265 original size:174 final size:174
Alignment explanation
Indices: 66124974--66125301 Score: 575
Period size: 174 Copynumber: 1.9 Consensus size: 174
66124964 AACTCAAGGT
* * * *
66124974 ACTTACCTTTTCCGTTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCAGTAAAGTCGCACCCTTAATGTAAATAATTTATA
*
66125039 GAAAATATATATTGGGTTCGCACACATAGCGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
66 GAAAATATATATTGGGTTCGCACACATAGCGCTTAATAATCAACCACGCACACTTAGTGCCATGC
66125104 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
*
66125148 ACTTACCTTTTCCGCTGTCCAAAATCGACTCAGTAAGGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCAGTAAAGTCGCACCCTTAATGTAAATAATTTATA
* *
66125213 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGCGCTTAATAATCAACCACGCACACTTAGTGCCATGC
*
66125278 ACTTTAAACTCGCACACTTAGTGC
131 ACTTTAAACTCACACACTTAGTGC
66125302 TGTACAATTT
Statistics
Matches: 145, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
174 145 1.00
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.30
Consensus pattern (174 bp):
ACTTACCTTTTCCGCTGTCCAAAATCGACTCAGTAAAGTCGCACCCTTAATGTAAATAATTTATA
GAAAATATATATTGGGTTCGCACACATAGCGCTTAATAATCAACCACGCACACTTAGTGCCATGC
ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
Found at i:66125293 original size:29 final size:30
Alignment explanation
Indices: 66125254--66125332 Score: 110
Period size: 29 Copynumber: 2.7 Consensus size: 30
66125244 CTTAATAATC
66125254 AACCACGCACACTTAGTGCCATGTAC-TTTA
1 AACC-CGCACACTTAGTGCCATGTACATTTA
*
66125284 AACTCGCACACTTAGTG-C-TGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATTTA
66125313 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
66125333 ATCTCATGAC
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 33 0.77
30 4 0.09
ACGTcount: A:0.30, C:0.30, G:0.14, T:0.25
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATTTA
Found at i:66133301 original size:29 final size:29
Alignment explanation
Indices: 66133238--66133305 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
66133228 TAATCAACCG
66133238 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
66133267 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
66133296 CGCACACTTA
1 CGCACACTTA
66133306 CCTTTTCCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:66133418 original size:174 final size:174
Alignment explanation
Indices: 66133127--66133454 Score: 586
Period size: 174 Copynumber: 1.9 Consensus size: 174
66133117 AACTCAAGGT
* *
66133127 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGTACCCTTCATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
*
66133192 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGC
66133257 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
*
66133301 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAGGTCGCACCCTT-AGTGTAAATAATTTAT
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTCA-TGTAAATAATTTAT
66133365 AGAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATG
65 AGAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATG
* *
66133430 TACTTTAAACTCGCACACTTAGTGC
130 CACTTTAAACTCACACACTTAGTGC
66133455 TGTACAATTT
Statistics
Matches: 147, Mismatches: 6, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
173 1 0.01
174 146 0.99
ACGTcount: A:0.30, C:0.24, G:0.15, T:0.30
Consensus pattern (174 bp):
ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGC
ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
Found at i:66133446 original size:29 final size:30
Alignment explanation
Indices: 66133407--66133485 Score: 110
Period size: 29 Copynumber: 2.7 Consensus size: 30
66133397 CTTAATAATC
66133407 AACCACGCACACTTAGTGCCATGTAC-TTTA
1 AACC-CGCACACTTAGTGCCATGTACATTTA
*
66133437 AACTCGCACACTTAGTG-C-TGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATTTA
66133466 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
66133486 ATCTCATGAC
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 33 0.77
30 4 0.09
ACGTcount: A:0.30, C:0.30, G:0.14, T:0.25
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATTTA
Found at i:66135617 original size:43 final size:43
Alignment explanation
Indices: 66135438--66135673 Score: 195
Period size: 43 Copynumber: 5.5 Consensus size: 43
66135428 AGAAAAACGT
* * * * * *
66135438 TGCTATAGAACATGACCTTTAGCGGTGTTTTTACTATAAATAC
1 TGCTATAGAACATGACCTTTAGCGGCGCTTTTCCCACAAACAC
** * * * *
66135481 CACTATAGAACATGACTTTTAGCGGCGTTTTTCTCACTAACAC
1 TGCTATAGAACATGACCTTTAGCGGCGCTTTTCCCACAAACAC
* * * * * **
66135524 TGCTACAAAACATGACCTTTAACGGC-ATTTTTCCACAAATGC
1 TGCTATAGAACATGACCTTTAGCGGCGCTTTTCCCACAAACAC
* * *
66135566 TTCTATAGAACAAGACCTTTAGCGGCGCTTTTCCCACAAACGC
1 TGCTATAGAACATGACCTTTAGCGGCGCTTTTCCCACAAACAC
* * ** * *
66135609 TGCTATAGAACAAGACATTTAGCAACACTTTTCTCACAAACAC
1 TGCTATAGAACATGACCTTTAGCGGCGCTTTTCCCACAAACAC
* *
66135652 CGTTATAGAACATGACCTTTAG
1 TGCTATAGAACATGACCTTTAG
66135674 TGTGCTCTCC
Statistics
Matches: 151, Mismatches: 41, Indels: 2
0.78 0.21 0.01
Matches are distributed among these distances:
42 31 0.21
43 120 0.79
ACGTcount: A:0.32, C:0.24, G:0.14, T:0.30
Consensus pattern (43 bp):
TGCTATAGAACATGACCTTTAGCGGCGCTTTTCCCACAAACAC
Found at i:66135641 original size:85 final size:86
Alignment explanation
Indices: 66135483--66135648 Score: 199
Period size: 85 Copynumber: 1.9 Consensus size: 86
66135473 ATAAATACCA
* * * * * * * *
66135483 CTATAGAACATGACTTTTAGCGGCGTTTTTCTCACTAACACTGCTACAAAACATGACCTTTAACG
1 CTATAGAACAAGACCTTTAGCGGCGCTTTTCCCACAAACACTGCTACAAAACAAGACATTTAACA
* *
66135548 GCATTTTTC-CACAAATGCTT
66 ACACTTTTCTCACAAATGCTT
* * * *
66135568 CTATAGAACAAGACCTTTAGCGGCGCTTTTCCCACAAACGCTGCTATAGAACAAGACATTTAGCA
1 CTATAGAACAAGACCTTTAGCGGCGCTTTTCCCACAAACACTGCTACAAAACAAGACATTTAACA
66135633 ACACTTTTCTCACAAA
66 ACACTTTTCTCACAAA
66135649 CACCGTTATA
Statistics
Matches: 66, Mismatches: 14, Indels: 1
0.81 0.17 0.01
Matches are distributed among these distances:
85 60 0.91
86 6 0.09
ACGTcount: A:0.32, C:0.26, G:0.13, T:0.29
Consensus pattern (86 bp):
CTATAGAACAAGACCTTTAGCGGCGCTTTTCCCACAAACACTGCTACAAAACAAGACATTTAACA
ACACTTTTCTCACAAATGCTT
Found at i:66135755 original size:42 final size:41
Alignment explanation
Indices: 66135707--66135801 Score: 120
Period size: 42 Copynumber: 2.3 Consensus size: 41
66135697 ATAGAGTACG
*
66135707 ACCTTTAGCGACACTTTTTCCACAAACGCCTCTATAAAA-TAA
1 ACCTTTAGCGACACTTTTTCCA-AAA-ACCTCTATAAAATTAA
** *
66135749 ACCTTTAGCGACACTTTTTTTAAAAACCTTTATAAAATTAA
1 ACCTTTAGCGACACTTTTTCCAAAAACCTCTATAAAATTAA
*
66135790 ACCTTTAACGAC
1 ACCTTTAGCGAC
66135802 GCCTTCCTCA
Statistics
Matches: 47, Mismatches: 5, Indels: 3
0.85 0.09 0.05
Matches are distributed among these distances:
40 10 0.21
41 17 0.36
42 20 0.43
ACGTcount: A:0.37, C:0.24, G:0.06, T:0.33
Consensus pattern (41 bp):
ACCTTTAGCGACACTTTTTCCAAAAACCTCTATAAAATTAA
Found at i:66138923 original size:18 final size:18
Alignment explanation
Indices: 66138900--66138935 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
66138890 GCATTGTAAA
66138900 ACAGATTCATGAATCGCT
1 ACAGATTCATGAATCGCT
66138918 ACAGATTCATGAATCGCT
1 ACAGATTCATGAATCGCT
66138936 TTCAGCAGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.33, C:0.22, G:0.17, T:0.28
Consensus pattern (18 bp):
ACAGATTCATGAATCGCT
Found at i:66139529 original size:35 final size:35
Alignment explanation
Indices: 66139478--66139547 Score: 113
Period size: 35 Copynumber: 2.0 Consensus size: 35
66139468 GACGAGCTTG
66139478 CTGCTTGCGAGCTGCGCAACTGACTACCGATTGCA
1 CTGCTTGCGAGCTGCGCAACTGACTACCGATTGCA
* * *
66139513 CTGCTTGCGAGTTGCGCCACTGACTACCTATTGCA
1 CTGCTTGCGAGCTGCGCAACTGACTACCGATTGCA
66139548 AGGGCTGAGT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
35 32 1.00
ACGTcount: A:0.19, C:0.31, G:0.24, T:0.26
Consensus pattern (35 bp):
CTGCTTGCGAGCTGCGCAACTGACTACCGATTGCA
Found at i:66145880 original size:47 final size:47
Alignment explanation
Indices: 66145782--66145994 Score: 145
Period size: 47 Copynumber: 4.6 Consensus size: 47
66145772 GTGCCAATGT
* **
66145782 CATGTCCCAGACATGGTCTTACACTGGCTCATATCTAAAGTTGATGC
1 CATGTCCCAGACATGGTCTTACACTGACTCATATCTAAAGCCGATGC
* *
66145829 CATGTCCCAGACATGGTCTTACACTGACT-ATCATTTCATAGCCGATG-
1 CATGTCCCAGACATGGTCTTACACTGACTCAT-ATCT-AAAGCCGATGC
* * *** * *
66145876 CATGTCCCAAACAT-GTCTTACACT-AGCTTACGCCTCGAGGCCGATG-
1 CATGTCCCAGACATGGTCTTACACTGA-CTCATATCT-AAAGCCGATGC
* * * *
66145922 CATGTCCCA-AGCAT-GTCTTACACTAGCCCTCGTCTC-AATGCCGATGC
1 CATGTCCCAGA-CATGGTCTTACACT-G-ACTCATATCTAAAGCCGATGC
* *
66145969 CATGTTCCAGACATGATCTTACACTG
1 CATGTCCCAGACATGGTCTTACACTG
66145995 GCTCTCATAA
Statistics
Matches: 132, Mismatches: 23, Indels: 22
0.75 0.13 0.12
Matches are distributed among these distances:
45 2 0.02
46 53 0.40
47 57 0.43
48 20 0.15
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.28
Consensus pattern (47 bp):
CATGTCCCAGACATGGTCTTACACTGACTCATATCTAAAGCCGATGC
Found at i:66145919 original size:46 final size:46
Alignment explanation
Indices: 66145869--66145993 Score: 153
Period size: 46 Copynumber: 2.7 Consensus size: 46
66145859 TCATTTCATA
* *
66145869 GCCGATGCATGTCCCAAACATGTCTTACACTAG-CTTACGCCTCGAG
1 GCCGATGCATGTCCCAAACATGTCTTACACTAGCCCT-CGCCTCAAG
* * *
66145915 GCCGATGCATGTCCCAAGCATGTCTTACACTAGCCCTCGTCTCAAT
1 GCCGATGCATGTCCCAAACATGTCTTACACTAGCCCTCGCCTCAAG
* *
66145961 GCCGATGCCATGTTCCAGACATGATCTTACACT
1 GCCGATG-CATGTCCCAAACATG-TCTTACACT
66145994 GGCTCTCATA
Statistics
Matches: 68, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
46 45 0.66
47 14 0.21
48 9 0.13
ACGTcount: A:0.23, C:0.33, G:0.18, T:0.26
Consensus pattern (46 bp):
GCCGATGCATGTCCCAAACATGTCTTACACTAGCCCTCGCCTCAAG
Found at i:66160891 original size:20 final size:19
Alignment explanation
Indices: 66160868--66160926 Score: 73
Period size: 20 Copynumber: 2.9 Consensus size: 19
66160858 TTAAATTCTA
66160868 AAAGATAAATACAAATAAAT
1 AAAGATAAATA-AAATAAAT
*
66160888 AAAGATAATTAAAGATAAAT
1 AAAGATAAATAAA-ATAAAT
*
66160908 AAGGATAAATAAAAATAAA
1 AAAGATAAAT-AAAATAAA
66160927 AGCTAAAATT
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
19 2 0.06
20 29 0.85
21 3 0.09
ACGTcount: A:0.69, C:0.02, G:0.08, T:0.20
Consensus pattern (19 bp):
AAAGATAAATAAAATAAAT
Found at i:66160902 original size:30 final size:30
Alignment explanation
Indices: 66160868--66160925 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
66160858 TTAAATTCTA
*
66160868 AAAGATAAATACA-AATAAATAAAGATAATT
1 AAAGATAAATA-AGAATAAATAAAAATAATT
*
66160898 AAAGATAAATAAGGATAAATAAAAATAA
1 AAAGATAAATAAGAATAAATAAAAATAA
66160926 AAGCTAAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 1 0.04
30 24 0.96
ACGTcount: A:0.69, C:0.02, G:0.09, T:0.21
Consensus pattern (30 bp):
AAAGATAAATAAGAATAAATAAAAATAATT
Found at i:66161423 original size:33 final size:32
Alignment explanation
Indices: 66161282--66161442 Score: 97
Period size: 33 Copynumber: 4.8 Consensus size: 32
66161272 ACATTCGTAG
* * *
66161282 TGCCATAACCCAGTTATGGTCTTATCGTCAGAA
1 TGCCATAACCCAGCTATGGTCTTA-CATTAGAA
* * * *
66161315 TGTCATAGCCTAGCTATGGTCTTACATATAAACA
1 TGCCATAACCCAGCTATGGTCTTACAT-TAGA-A
*** * * * * *
66161349 CTGCCATGGTCCAACCATGGTCTTACGTTTATAG
1 -TGCCATAACCCAGCTATGGTCTTAC-ATTAGAA
* *
66161383 TGTCATAACCCAGTTATGGTCTTATCATTAGAA
1 TGCCATAACCCAGCTATGGTCTTA-CATTAGAA
* *
66161416 TGCCATAACCCAACTTTGGTCTTACAT
1 TGCCATAACCCAGCTATGGTCTTACAT
66161443 AAAAACATTG
Statistics
Matches: 93, Mismatches: 30, Indels: 11
0.69 0.22 0.08
Matches are distributed among these distances:
32 5 0.05
33 63 0.68
34 2 0.02
35 22 0.24
36 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.16, T:0.33
Consensus pattern (32 bp):
TGCCATAACCCAGCTATGGTCTTACATTAGAA
Found at i:66161455 original size:101 final size:101
Alignment explanation
Indices: 66161270--66161509 Score: 354
Period size: 101 Copynumber: 2.4 Consensus size: 101
66161260 AATTCATCCT
* * * * * * * *
66161270 TTACATTCGTAGTGCCATAACCCAGTTATGGTCTTATCGTCAGAATGTCATAGCCTAGCTATGGT
1 TTACGTTCATAGTGTCATAACCCAGTTATGGTCTTATCATCAGAATGCCATAACCCAACTATGGT
*
66161335 CTTACATATAAACACTGCCATGGTCCAACCATGGTC
66 CTTACATAAAAACACTGCCATGGTCCAACCATGGTC
* * *
66161371 TTACGTTTATAGTGTCATAACCCAGTTATGGTCTTATCATTAGAATGCCATAACCCAACTTTGGT
1 TTACGTTCATAGTGTCATAACCCAGTTATGGTCTTATCATCAGAATGCCATAACCCAACTATGGT
* *
66161436 CTTACATAAAAACATTGCCATGGTCTAACCATGGTC
66 CTTACATAAAAACACTGCCATGGTCCAACCATGGTC
66161472 TTACGTTCATAGTGTCATAACCCAGTTATGGTCTTATC
1 TTACGTTCATAGTGTCATAACCCAGTTATGGTCTTATC
66161510 CGTCAATTCA
Statistics
Matches: 124, Mismatches: 15, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
101 124 1.00
ACGTcount: A:0.28, C:0.23, G:0.16, T:0.33
Consensus pattern (101 bp):
TTACGTTCATAGTGTCATAACCCAGTTATGGTCTTATCATCAGAATGCCATAACCCAACTATGGT
CTTACATAAAAACACTGCCATGGTCCAACCATGGTC
Found at i:66163467 original size:19 final size:19
Alignment explanation
Indices: 66163443--66163485 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
66163433 TTTCTTTCCT
66163443 TATATA-CTAAATAAAATAA
1 TATATATCT-AATAAAATAA
*
66163462 TATATATCTAATTAAATAA
1 TATATATCTAATAAAATAA
66163481 T-TATA
1 TATATA
66163486 AAATATCATC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
18 4 0.18
19 16 0.73
20 2 0.09
ACGTcount: A:0.56, C:0.05, G:0.00, T:0.40
Consensus pattern (19 bp):
TATATATCTAATAAAATAA
Found at i:66171656 original size:30 final size:29
Alignment explanation
Indices: 66171622--66171710 Score: 112
Period size: 26 Copynumber: 3.1 Consensus size: 29
66171612 ATAAATTTGG
66171622 ATAATTTTTTAATTATTTAAATAATGAAAA
1 ATAATTTTTT-ATTATTTAAATAATGAAAA
*
66171652 ATAATGTTATTTATTATTTAAATTAT-AAAA
1 ATAAT-TT-TTTATTATTTAAATAATGAAAA
*
66171682 AT-A-TATTTATTATTTAAATAATGAAAA
1 ATAATTTTTTATTATTTAAATAATGAAAA
66171709 AT
1 AT
66171711 TTTAGAAAAA
Statistics
Matches: 53, Mismatches: 3, Indels: 9
0.82 0.05 0.14
Matches are distributed among these distances:
26 16 0.30
27 7 0.13
29 1 0.02
30 11 0.21
31 15 0.28
32 3 0.06
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.47
Consensus pattern (29 bp):
ATAATTTTTTATTATTTAAATAATGAAAA
Found at i:66171744 original size:8 final size:8
Alignment explanation
Indices: 66171731--66171778 Score: 60
Period size: 8 Copynumber: 5.9 Consensus size: 8
66171721 AAATACATTG
66171731 TTTTTAAT
1 TTTTTAAT
66171739 TTTTTAATT
1 TTTTTAA-T
66171748 TTTTTAAT
1 TTTTTAAT
**
66171756 TTTAAAAT
1 TTTTTAAT
*
66171764 ATTTTAAT
1 TTTTTAAT
66171772 TTTTTAA
1 TTTTTAA
66171779 ATGATGAGAT
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
8 25 0.76
9 8 0.24
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (8 bp):
TTTTTAAT
Found at i:66171753 original size:17 final size:17
Alignment explanation
Indices: 66171731--66171780 Score: 66
Period size: 17 Copynumber: 3.0 Consensus size: 17
66171721 AAATACATTG
*
66171731 TTTTTAATTTTTTAATT
1 TTTTTAATTTTTTAAAT
*
66171748 TTTTTAA-TTTTAAAAT
1 TTTTTAATTTTTTAAAT
*
66171764 ATTTTAATTTTTTAAAT
1 TTTTTAATTTTTTAAAT
66171781 GATGAGATCA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
16 13 0.46
17 15 0.54
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (17 bp):
TTTTTAATTTTTTAAAT
Found at i:66181013 original size:27 final size:27
Alignment explanation
Indices: 66180979--66181070 Score: 121
Period size: 27 Copynumber: 3.4 Consensus size: 27
66180969 TGGATAAGTT
66180979 GTAGAATTACCGAAATACCCCTGTAAG
1 GTAGAATTACCGAAATACCCCTGTAAG
* *
66181006 GTAGAATTACTGAAACACCCCTGTAAG
1 GTAGAATTACCGAAATACCCCTGTAAG
* * **
66181033 GTAGAATTACCGAGATACCCTTGTGGG
1 GTAGAATTACCGAAATACCCCTGTAAG
*
66181060 GTAAAATTACC
1 GTAGAATTACC
66181071 ATTTTGCCCC
Statistics
Matches: 56, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 56 1.00
ACGTcount: A:0.35, C:0.21, G:0.21, T:0.24
Consensus pattern (27 bp):
GTAGAATTACCGAAATACCCCTGTAAG
Found at i:66181115 original size:27 final size:26
Alignment explanation
Indices: 66181071--66181124 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 26
66181061 TAAAATTACC
66181071 ATTTTGCCCCTAGGGTGTTAAATGACT
1 ATTTTGCCCCTAGGGTG-TAAATGACT
* *
66181098 ATTTTGCCCCTCGTGTGTAAATGACT
1 ATTTTGCCCCTAGGGTGTAAATGACT
66181124 A
1 A
66181125 ACTTGTGTGA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 10 0.40
27 15 0.60
ACGTcount: A:0.22, C:0.20, G:0.20, T:0.37
Consensus pattern (26 bp):
ATTTTGCCCCTAGGGTGTAAATGACT
Found at i:66184232 original size:122 final size:120
Alignment explanation
Indices: 66184017--66184240 Score: 344
Period size: 122 Copynumber: 1.9 Consensus size: 120
66184007 CCAAAATAAC
* * *
66184017 CATGAGAATGAGAATAGTAATGTAATGGGTATGAGGTTTTCCTAATCTCTATTTAACACGGAACG
1 CATGAGAATGAAAATAGTAATGTAATGGGTATGAGGTTTTCCTAATCTCAATTTAACACGAAACG
66184082 TATGATAACTAACCTAAGAATGAAAATTAAATGATAGGCATTGGCATGGTAATAG
66 TATGATAACTAACCTAAGAATGAAAATTAAATGATAGGCATTGGCATGGTAATAG
*
66184137 CATGAGAAT-AAACATAGTAATGTCATGGGTATGAGG-TTTCTCTAATAACTCAATTTAACACGA
1 CATGAGAATGAAA-ATAGTAATGTAATGGGTATGAGGTTTTC-CTAAT--CTCAATTTAACACGA
* *
66184200 AATGTATGATAACTAACCTAAGAATGCAAATTAAATGATAG
62 AACGTATGATAACTAACCTAAGAATGAAAATTAAATGATAG
66184241 AATAATGAGG
Statistics
Matches: 94, Mismatches: 6, Indels: 6
0.89 0.06 0.06
Matches are distributed among these distances:
119 6 0.06
120 36 0.38
122 52 0.55
ACGTcount: A:0.40, C:0.12, G:0.19, T:0.29
Consensus pattern (120 bp):
CATGAGAATGAAAATAGTAATGTAATGGGTATGAGGTTTTCCTAATCTCAATTTAACACGAAACG
TATGATAACTAACCTAAGAATGAAAATTAAATGATAGGCATTGGCATGGTAATAG
Found at i:66184769 original size:55 final size:55
Alignment explanation
Indices: 66184684--66184794 Score: 125
Period size: 55 Copynumber: 2.0 Consensus size: 55
66184674 CGTGTCAATC
* * * *
66184684 TAACAGGTTCGACCACGGGTGCTAGCCACGGGCGTGTCGCACGCCGGTGCTGTTT
1 TAACAGGTTCGACCACGGGTGCTACCCACGGGCATGTCACACGCCCGTGCTGTTT
* * * * *
66184739 TAACAGGTTCGCCCAC-GGTTCTTCCACACGGGCATGTCACATGCCCGTGTTGTTT
1 TAACAGGTTCGACCACGGGTGCTACC-CACGGGCATGTCACACGCCCGTGCTGTTT
66184794 T
1 T
66184795 GGCAAGCTCG
Statistics
Matches: 46, Mismatches: 9, Indels: 2
0.81 0.16 0.04
Matches are distributed among these distances:
54 6 0.13
55 40 0.87
ACGTcount: A:0.15, C:0.30, G:0.29, T:0.26
Consensus pattern (55 bp):
TAACAGGTTCGACCACGGGTGCTACCCACGGGCATGTCACACGCCCGTGCTGTTT
Found at i:66189083 original size:27 final size:27
Alignment explanation
Indices: 66189053--66189230 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
66189043 ATATTGAGTC
* * * *
66189053 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
66189080 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
66189107 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
66189135 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
66189162 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
66189189 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
66189216 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
66189231 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:66189192 original size:82 final size:81
Alignment explanation
Indices: 66189074--66189229 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
66189064 TGCTATATAA
* *
66189074 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
66189139 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
66189156 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
66189220 CACTTAGTGC
65 CACTTAGTGC
66189230 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:66198669 original size:5 final size:5
Alignment explanation
Indices: 66198659--66198688 Score: 60
Period size: 5 Copynumber: 6.0 Consensus size: 5
66198649 TTTTTCTTAC
66198659 AATTT AATTT AATTT AATTT AATTT AATTT
1 AATTT AATTT AATTT AATTT AATTT AATTT
66198689 TACTATTTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
AATTT
Found at i:66203823 original size:5 final size:5
Alignment explanation
Indices: 66203813--66203838 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
66203803 TTTTAGAAAG
66203813 TTTAT TTTAT TTTAT TTTAT TTTAT T
1 TTTAT TTTAT TTTAT TTTAT TTTAT T
66203839 ATTAATTTCG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTAT
Found at i:66222017 original size:45 final size:45
Alignment explanation
Indices: 66221953--66222126 Score: 203
Period size: 45 Copynumber: 3.8 Consensus size: 45
66221943 TGTAACCCGC
66221953 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTGCAT
*
66221998 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-C--GTTGCAT
* * * *
66222048 CTC-TCA---AACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 C-CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTT-GCAT
*
66222091 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
66222127 ATGCCCAAAA
Statistics
Matches: 111, Mismatches: 7, Indels: 21
0.80 0.05 0.15
Matches are distributed among these distances:
42 3 0.03
43 6 0.05
44 1 0.01
45 36 0.32
46 27 0.24
47 27 0.24
48 1 0.01
50 9 0.08
51 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTGCAT
Found at i:66222120 original size:93 final size:92
Alignment explanation
Indices: 66221962--66222131 Score: 295
Period size: 93 Copynumber: 1.8 Consensus size: 92
66221952 CCCATAAGTG
* *
66221962 AACTCGGACTCAACTCAACGAGCTCGGGCGTTGCATCCATAAGTGAACTCGGACTCAACTCAACG
1 AACTCGGACTCAACTCAACGAGCTCGGACATTGCATCCATAAGTGAACTCGGACTCAACTCAACG
66222027 AGCTCGGATGCCTAGTTACATCTCTCA
66 AGCTCGGATGCCTAGTTACATCTCTCA
*
66222054 AACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 AACTCGGACTCAACTCAACGAGCTCGGACATT-GCATCCATAAGTGAACTCGGACTCAACTCAAC
*
66222119 GAGTTCGGATGCC
65 GAGCTCGGATGCC
66222132 CAAAATCCTA
Statistics
Matches: 73, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
92 29 0.40
93 44 0.60
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (92 bp):
AACTCGGACTCAACTCAACGAGCTCGGACATTGCATCCATAAGTGAACTCGGACTCAACTCAACG
AGCTCGGATGCCTAGTTACATCTCTCA
Found at i:66224537 original size:15 final size:15
Alignment explanation
Indices: 66224489--66224567 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
66224479 CAAAGATAAT
*
66224489 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
66224503 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
66224518 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
66224533 AAGAAATCCAGAAT-
1 AAGAAATCCAGAATA
* *
66224547 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
66224562 AAGAAA
1 AAGAAA
66224568 CCAAGATACG
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
14 21 0.40
15 31 0.58
16 1 0.02
ACGTcount: A:0.58, C:0.14, G:0.18, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:66224567 original size:29 final size:30
Alignment explanation
Indices: 66224490--66224575 Score: 99
Period size: 29 Copynumber: 3.0 Consensus size: 30
66224480 AAAGATAATA
*
66224490 AGAAAACC-GAATAAAGAAATCCAAGATAG
1 AGAAACCCAGAATAAAGAAATCCAAGATAG
66224519 AGAAACCCAGAATAAAGAAATCC-AGAATA-
1 AGAAACCCAGAATAAAGAAATCCAAG-ATAG
* * *
66224548 AGAGATCCAGGATAAAGAAA-CCAAGATA
1 AGAAACCCAGAATAAAGAAATCCAAGATA
66224576 CGACATTATG
Statistics
Matches: 50, Mismatches: 4, Indels: 7
0.82 0.07 0.11
Matches are distributed among these distances:
28 5 0.10
29 28 0.56
30 17 0.34
ACGTcount: A:0.57, C:0.15, G:0.17, T:0.10
Consensus pattern (30 bp):
AGAAACCCAGAATAAAGAAATCCAAGATAG
Found at i:66224575 original size:14 final size:14
Alignment explanation
Indices: 66224500--66224575 Score: 57
Period size: 15 Copynumber: 5.2 Consensus size: 14
66224490 AGAAAACCGA
66224500 ATAAAGAAATCCAAG
1 ATAAAGAAA-CCAAG
* *
66224515 ATAGAGAAACCCAG
1 ATAAAGAAACCAAG
66224529 AATAAAGAAATCC-AG
1 -ATAAAGAAA-CCAAG
* *
66224544 A-ATAAGAGATCCAGG
1 ATA-AAGA-AACCAAG
66224559 ATAAAGAAACCAAG
1 ATAAAGAAACCAAG
66224573 ATA
1 ATA
66224576 CGACATTATG
Statistics
Matches: 48, Mismatches: 7, Indels: 13
0.71 0.10 0.19
Matches are distributed among these distances:
13 1 0.02
14 19 0.40
15 25 0.52
16 3 0.06
ACGTcount: A:0.57, C:0.14, G:0.17, T:0.12
Consensus pattern (14 bp):
ATAAAGAAACCAAG
Found at i:66227404 original size:92 final size:93
Alignment explanation
Indices: 66227293--66227463 Score: 299
Period size: 92 Copynumber: 1.8 Consensus size: 93
66227283 GCCCATAAGT
* *
66227293 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTC-GACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
66227357 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
*
66227385 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
66227450 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
66227464 CAAAATCCTA
Statistics
Matches: 74, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
92 49 0.66
93 25 0.34
ACGTcount: A:0.27, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:66227436 original size:46 final size:46
Alignment explanation
Indices: 66227285--66227459 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 46
66227275 TGTAACCCGC
* *
66227285 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
66227331 CCATAAGTGAACTC-GACTCAACTCAACGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** *
66227376 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
66227423 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
66227460 TGCCCAAAAT
Statistics
Matches: 109, Mismatches: 12, Indels: 16
0.80 0.09 0.12
Matches are distributed among these distances:
42 1 0.01
43 3 0.03
45 26 0.24
46 49 0.45
47 25 0.23
49 4 0.04
50 1 0.01
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:66229855 original size:15 final size:15
Alignment explanation
Indices: 66229833--66229909 Score: 70
Period size: 15 Copynumber: 5.2 Consensus size: 15
66229823 AAAAAACCGA
66229833 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
66229848 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
66229862 AATAAAG-AATCC-AG
1 -ATAAAGAAATCCAAG
* *
66229876 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
66229892 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
66229907 ATA
1 ATA
66229910 CGNNNNNNNN
Statistics
Matches: 50, Mismatches: 8, Indels: 8
0.76 0.12 0.12
Matches are distributed among these distances:
14 15 0.30
15 34 0.68
16 1 0.02
ACGTcount: A:0.56, C:0.16, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:66229890 original size:29 final size:29
Alignment explanation
Indices: 66229831--66229909 Score: 79
Period size: 29 Copynumber: 2.7 Consensus size: 29
66229821 AGAAAAAACC
*
66229831 GAATAAAGAAATCCAAGATAGAGAAACCCA
1 GAATAAAG-AATCCAAGATAAAGAAACCCA
* *
66229861 GAATAAAGAATCC-AGAATAAAGAGATCCA
1 GAATAAAGAATCCAAG-ATAAAGAAACCCA
* *
66229890 GGATAAAGAAACCCAAGATA
1 GAATAAAG-AATCCAAGATA
66229910 CGNNNNNNNN
Statistics
Matches: 41, Mismatches: 5, Indels: 6
0.79 0.10 0.12
Matches are distributed among these distances:
28 2 0.05
29 22 0.54
30 15 0.37
31 2 0.05
ACGTcount: A:0.56, C:0.15, G:0.18, T:0.11
Consensus pattern (29 bp):
GAATAAAGAATCCAAGATAAAGAAACCCA
Found at i:66231064 original size:45 final size:45
Alignment explanation
Indices: 66231015--66231187 Score: 162
Period size: 45 Copynumber: 3.8 Consensus size: 45
66231005 GATGTGGGCA
66231015 TCCGAACTCGTTGAGTT-AGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * *
66231060 TCCGAACTCGTTGAGTTGAGTCGCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTC-CGAGTTC-ACTTATG-GA-T-GCGAAG
*
66231108 TCCGAGCTCGTTGAGTTGAGTCCTG-GTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCC-GAGTTCACTTATGGATGCGAA-G
*
66231154 -CCGAGCTCG-TGAGTTGA-TCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
66231188 GCGGTTACAT
Statistics
Matches: 106, Mismatches: 11, Indels: 24
0.75 0.08 0.17
Matches are distributed among these distances:
42 1 0.01
43 16 0.15
44 11 0.10
45 27 0.25
46 8 0.08
47 12 0.11
48 26 0.25
49 1 0.01
50 3 0.03
51 1 0.01
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:66234133 original size:18 final size:20
Alignment explanation
Indices: 66234110--66234155 Score: 62
Period size: 18 Copynumber: 2.5 Consensus size: 20
66234100 TTTTTCTAGA
66234110 AGGTTCATGT-CTTAAT-TT
1 AGGTTCATGTACTTAATATT
66234128 AGGTTCAT-TACTTAATATT
1 AGGTTCATGTACTTAATATT
*
66234147 AAGTTCATG
1 AGGTTCATG
66234156 ACATGACTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
17 1 0.04
18 14 0.58
19 9 0.38
ACGTcount: A:0.28, C:0.11, G:0.15, T:0.46
Consensus pattern (20 bp):
AGGTTCATGTACTTAATATT
Found at i:66241385 original size:29 final size:28
Alignment explanation
Indices: 66241349--66241426 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
66241339 TCATGAGATT
66241349 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
*
66241379 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
66241406 TGGCACTAAGTGTGCGTGGTT
1 -GGCACTAAGTGTGCG-GGTT
66241427 GATTATTAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 5 0.12
29 35 0.81
30 3 0.07
ACGTcount: A:0.26, C:0.14, G:0.31, T:0.29
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:66241644 original size:174 final size:174
Alignment explanation
Indices: 66241379--66241706 Score: 602
Period size: 174 Copynumber: 1.9 Consensus size: 174
66241369 AAATTGTACA
*
66241379 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGTGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
* *
66241444 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACCTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACCTTACCGAGTCAA
66241509 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
* *
66241553 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
*
66241618 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACCTTACCGAGTCAA
66241683 TTTTGGACAGCGGAAAAGGTAAGT
131 TTTTGGACAGCGGAAAAGGTAAGT
66241707 ACCTTGAGTT
Statistics
Matches: 148, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
174 148 1.00
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACCTTACCGAGTCAA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:66260146 original size:23 final size:23
Alignment explanation
Indices: 66260103--66260146 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
66260093 TTAGAACAAG
* *
66260103 AAATAAAAACCATTTTGAAATGA
1 AAATAAAAACCATATTAAAATGA
66260126 AAATAAAAACC-TAATTAAAAT
1 AAATAAAAACCAT-ATTAAAAT
66260147 CCTAGTTAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 1 0.06
23 17 0.94
ACGTcount: A:0.61, C:0.09, G:0.05, T:0.25
Consensus pattern (23 bp):
AAATAAAAACCATATTAAAATGA
Found at i:66279176 original size:40 final size:40
Alignment explanation
Indices: 66279102--66279283 Score: 287
Period size: 40 Copynumber: 4.6 Consensus size: 40
66279092 AACCCAAGTA
* *
66279102 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
* *
66279141 CCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATT
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
* *
66279181 CTTTCGGGACTTAGCCCGGATATAGTTACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
66279221 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
66279261 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
66279284 CATTCAAATA
Statistics
Matches: 131, Mismatches: 10, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
39 12 0.09
40 118 0.90
41 1 0.01
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:66295621 original size:41 final size:41
Alignment explanation
Indices: 66295576--66295727 Score: 243
Period size: 41 Copynumber: 3.7 Consensus size: 41
66295566 AAAGCCTAGT
* * *
66295576 ATAATACACCGGCACAGAGCCTGCTAGGCAATATGCCTGAA
1 ATAATACACCGGCATAAAGCCTGCTAGGCAATAAGCCTGAA
66295617 ATAATACACCGGCATAAAGCCTGCTAGGCAATAAGCCTGAA
1 ATAATACACCGGCATAAAGCCTGCTAGGCAATAAGCCTGAA
*
66295658 ATAATACACCGGCATAAAGCCTGCTAGGCAATAAGCCTGAT
1 ATAATACACCGGCATAAAGCCTGCTAGGCAATAAGCCTGAA
* *
66295699 ATAATTCACCGGCAT-AAGCCTACTAGGCA
1 ATAATACACCGGCATAAAGCCTGCTAGGCA
66295728 TAAAGCTTGA
Statistics
Matches: 105, Mismatches: 6, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
40 13 0.12
41 92 0.88
ACGTcount: A:0.36, C:0.26, G:0.20, T:0.18
Consensus pattern (41 bp):
ATAATACACCGGCATAAAGCCTGCTAGGCAATAAGCCTGAA
Found at i:66302278 original size:46 final size:46
Alignment explanation
Indices: 66302210--66302346 Score: 186
Period size: 46 Copynumber: 3.0 Consensus size: 46
66302200 TATATATACA
* * * *
66302210 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* * *
66302256 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTATCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
*
66302302 TATCTCATACACATTTCGCATTAGCCATTCGGCCTTT-CCACATAT
1 CATCTCATACACATTTCGCATTAGCCATTCGG-CTTTACCACATAT
66302347 ATACATGTTC
Statistics
Matches: 79, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
46 75 0.95
47 4 0.05
ACGTcount: A:0.25, C:0.31, G:0.09, T:0.36
Consensus pattern (46 bp):
CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
Found at i:66302381 original size:47 final size:47
Alignment explanation
Indices: 66302320--66302511 Score: 278
Period size: 47 Copynumber: 4.1 Consensus size: 47
66302310 ACACATTTCG
* **
66302320 CATTAGCCATTCGGCCTT-TCCACATATATACATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTAT-CACATATACGCATGTTCACATTCATCA
* * *
66302367 CATTGGCCCTTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATACGCATGTTCACATTCATCA
* *
66302414 CATTGGCCATTCGGCCTTATCGCACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATACGCATGTTCACATTCATCA
* *
66302461 CATTGGCCATTCGGCCTTATCACACATACGCATATTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATACGCATGTTCACATTCATCA
66302508 CATT
1 CATT
66302512 AAAATCCTAA
Statistics
Matches: 134, Mismatches: 10, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
47 133 0.99
48 1 0.01
ACGTcount: A:0.25, C:0.31, G:0.11, T:0.33
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACATATACGCATGTTCACATTCATCA
Found at i:66317741 original size:20 final size:19
Alignment explanation
Indices: 66317708--66317746 Score: 51
Period size: 20 Copynumber: 2.0 Consensus size: 19
66317698 AGTAATTAGG
**
66317708 CTAAAATGGTAATTAGAGAA
1 CTAAAATGAAAATTA-AGAA
66317728 CTAAAATGAAAATTAAGAA
1 CTAAAATGAAAATTAAGAA
66317747 AAGATTAAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.56, C:0.05, G:0.15, T:0.23
Consensus pattern (19 bp):
CTAAAATGAAAATTAAGAA
Found at i:66318649 original size:41 final size:41
Alignment explanation
Indices: 66318495--66318649 Score: 159
Period size: 41 Copynumber: 3.8 Consensus size: 41
66318485 AGAACAATAA
** * * * *
66318495 TGAATTGCACATATGTGCCATTGTTTGTGCTTCAGTACCCT
1 TGAATTGCACATATGTGCCCCTATTTGTACTTCGGTACCCC
* * *
66318536 TGAATTGCACCTATGTGCCTCTATTTGTACTCCGGTACCCC
1 TGAATTGCACATATGTGCCCCTATTTGTACTTCGGTACCCC
*** * *
66318577 TGAATTGCACATGCATGCCCCTGTTTTTACTTCGGTACCCC
1 TGAATTGCACATATGTGCCCCTATTTGTACTTCGGTACCCC
*
66318618 -GTAATTGCAAATATGTGCCCCTATTTGTACTT
1 TG-AATTGCACATATGTGCCCCTATTTGTACTT
66318650 TAGTACCTCT
Statistics
Matches: 91, Mismatches: 22, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
40 1 0.01
41 90 0.99
ACGTcount: A:0.19, C:0.26, G:0.17, T:0.37
Consensus pattern (41 bp):
TGAATTGCACATATGTGCCCCTATTTGTACTTCGGTACCCC
Found at i:66323776 original size:50 final size:50
Alignment explanation
Indices: 66323722--66323950 Score: 280
Period size: 50 Copynumber: 4.6 Consensus size: 50
66323712 CTGGTATGCA
* *
66323722 TAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAATCTGGTACATG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCTAACAATCTGGTACACG
* *
66323772 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCAT-TGGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCTAACAATCTGG-TACACG
* * * * * * * *
66323822 TAGTAGCTTGCACTTAGTACTACACACGTGATCGAAGCTATCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCTAA-CAATCTGGTACACG
* * * * *
66323873 TACTAGCCTACACTTAGTACTACACATGCGACCTAACAATTTGGTACATG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCTAACAATCTGGTACACG
66323923 TAGTAGCCTGCACTTAGTACTACACACG
1 TAGTAGCCTGCACTTAGTACTACACACG
66323951 TGATCGAAGC
Statistics
Matches: 149, Mismatches: 27, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
49 3 0.02
50 108 0.72
51 36 0.24
52 2 0.01
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCTAACAATCTGGTACACG
Found at i:66323896 original size:101 final size:101
Alignment explanation
Indices: 66323722--66323980 Score: 342
Period size: 101 Copynumber: 2.6 Consensus size: 101
66323712 CTGGTATGCA
* * * * * * *** *
66323722 TAGTAGCCTGCACTTAGTACTACACATGCGACCTAA-CAATCTGGTACATGTAGTAGCCTGCACT
1 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGCTATCGGGTACGCATAGTAGCCTACACT
* *
66323786 TAGTACTACACACGTGACCTAACCA-TTGGATACACG
66 TAGTACTACACACGCGACCTAACAATTTGG-TACACG
* *
66323822 TAGTAGCTTGCACTTAGTACTACACACGTGATCGAAGCTATCGGGTACGCATACTAGCCTACACT
1 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGCTATCGGGTACGCATAGTAGCCTACACT
* *
66323887 TAGTACTACACATGCGACCTAACAATTTGGTACATG
66 TAGTACTACACACGCGACCTAACAATTTGGTACACG
*
66323923 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGCTATCGGGTATGCATAGTAGC
1 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGCTATCGGGTACGCATAGTAGC
66323981 TGTAACACCC
Statistics
Matches: 138, Mismatches: 19, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
100 31 0.22
101 103 0.75
102 4 0.03
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.26
Consensus pattern (101 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGCTATCGGGTACGCATAGTAGCCTACACT
TAGTACTACACACGCGACCTAACAATTTGGTACACG
Found at i:66325067 original size:40 final size:40
Alignment explanation
Indices: 66325023--66325210 Score: 308
Period size: 40 Copynumber: 4.7 Consensus size: 40
66325013 GCTACTTGCT
66325023 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
66325063 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
66325103 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * * * *
66325143 CAAACGCCTCCGGG-CTTAGCCCGG-AATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
66325182 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
66325211 CATCCGAATA
Statistics
Matches: 137, Mismatches: 8, Indels: 6
0.91 0.05 0.04
Matches are distributed among these distances:
38 1 0.01
39 32 0.23
40 103 0.75
41 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:66325209 original size:79 final size:80
Alignment explanation
Indices: 66325000--66325210 Score: 313
Period size: 80 Copynumber: 2.7 Consensus size: 80
66324990 CCTTCGGAAT
* *
66325000 TTAG-CCGGATATAGCT-ACTTGCTCAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 TTAGCCCGGATATAG-TAACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* *
66325063 CAAATGCCTTCGGGAC
65 CAAACGCCTCCGGGAC
* *
66325079 TTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCAC
1 TTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCAC
66325144 AAACGCCTCCGGG-C
66 AAACGCCTCCGGGAC
*
66325158 TTAGCCCGGA-ATTAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
1 TTAGCCCGGATA-TAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
66325211 CATCCGAATA
Statistics
Matches: 121, Mismatches: 8, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
78 1 0.01
79 54 0.45
80 66 0.55
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (80 bp):
TTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCAC
AAACGCCTCCGGGAC
Found at i:66328932 original size:47 final size:47
Alignment explanation
Indices: 66328869--66329415 Score: 850
Period size: 47 Copynumber: 11.6 Consensus size: 47
66328859 CCCTTCGGGA
* * *
66328869 CTTATCACATTTATACACTTCCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
66328916 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
66328963 CTTATCACACATACACA-TGTTCACA-TCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
66329009 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
66329056 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
66329103 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
66329150 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
66329197 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
66329246 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
66329293 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
66329340 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
66329389 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
66329416 TATTCAAATA
Statistics
Matches: 483, Mismatches: 10, Indels: 14
0.95 0.02 0.03
Matches are distributed among these distances:
46 47 0.10
47 343 0.71
48 1 0.00
49 92 0.19
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:66329020 original size:24 final size:24
Alignment explanation
Indices: 66328946--66329020 Score: 59
Period size: 24 Copynumber: 3.2 Consensus size: 24
66328936 TCACATTCAT
66328946 CACATTGGCCATTCGGCCTTATCA
1 CACATTGGCCATTCGGCCTTATCA
* ** **
66328970 CACA-T-ACACA-T-GTTCACATCA
1 CACATTGGC-CATTCGGCCTTATCA
66328991 TCACATTGGCCATTCGGCCTTATCA
1 -CACATTGGCCATTCGGCCTTATCA
66329016 CACAT
1 CACAT
66329021 ACACATGTTC
Statistics
Matches: 35, Mismatches: 10, Indels: 12
0.61 0.18 0.21
Matches are distributed among these distances:
21 6 0.17
22 6 0.17
23 6 0.17
24 11 0.31
25 6 0.17
ACGTcount: A:0.27, C:0.33, G:0.12, T:0.28
Consensus pattern (24 bp):
CACATTGGCCATTCGGCCTTATCA
Found at i:66329277 original size:143 final size:141
Alignment explanation
Indices: 66328869--66329415 Score: 850
Period size: 143 Copynumber: 3.9 Consensus size: 141
66328859 CCCTTCGGGA
* * * *
66328869 CTTATCACATTTATACACTTCCACATCCATCACATTGGCCATTCGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACAC
* * *
66328934 TTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACACA-TGTTCACA-TCATCACAT
66 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACACT-TTCACATTCATCACAT
66328997 TGGCCATTCGGC
130 TGGCCATTCGGC
* * * * *
66329009 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACACA
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACA
*
66329073 -TGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACA
65 CT-TTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
66329137 TTGGCCATTCGGC
129 TTGGCCATTCGGC
66329150 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCAC--ATATATAC
*
66329215 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
64 ACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
* *
66329280 TCGGCCATTAGGC
129 TTGGCCATTCGGC
*
66329293 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCAC--ATATATAC
66329358 ACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACACTTTCACATT
64 ACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACACTTTCACATT
66329416 TATTCAAATA
Statistics
Matches: 379, Mismatches: 20, Indels: 13
0.92 0.05 0.03
Matches are distributed among these distances:
139 2 0.01
140 104 0.27
141 72 0.19
142 1 0.00
143 199 0.53
144 1 0.00
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.33
Consensus pattern (141 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATT
GGCCATTCGGC
Found at i:66330808 original size:85 final size:85
Alignment explanation
Indices: 66330679--66330857 Score: 349
Period size: 85 Copynumber: 2.1 Consensus size: 85
66330669 TATTTTATTG
*
66330679 CCCATGCCCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
66330744 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
66330764 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
66330829 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
66330849 CCCATGCTC
1 CCCATGCTC
66330858 ATGGCCGGCC
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 93 1.00
ACGTcount: A:0.26, C:0.28, G:0.08, T:0.37
Consensus pattern (85 bp):
CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
TAGCCATAACATCTTGTCCA
Found at i:66332160 original size:40 final size:40
Alignment explanation
Indices: 66332125--66332372 Score: 367
Period size: 40 Copynumber: 6.3 Consensus size: 40
66332115 GCAGCATGAT
* * * *
66332125 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
** * *
66332165 TGCTCTTCGGGGTTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
66332205 TGCTCTTC-GAACTTAGCCC-GATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
66332243 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
66332283 TGCTCTTCGGGACTTAGCCTGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
66332323 TGCTCTTC-GGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
66332362 TGCTCTTCGGG
1 TGCTCTTCGGG
66332373 GCATGAATGC
Statistics
Matches: 189, Mismatches: 16, Indels: 6
0.90 0.08 0.03
Matches are distributed among these distances:
38 25 0.13
39 55 0.29
40 109 0.58
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:66332260 original size:78 final size:79
Alignment explanation
Indices: 66332125--66332372 Score: 356
Period size: 79 Copynumber: 3.1 Consensus size: 79
66332115 GCAGCATGAT
* * * * ** *
66332125 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGGGTTTAGCACGGATA
1 TGCTCTTCGGGACTTAGCCC-GATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATA
*
66332190 TATCACTAGCACGAA
65 CATCACTAGCACGAA
* *
66332205 TGCTCTTC-GAACTTAGCCCGATACATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATAC
1 TGCTCTTCGGGACTTAGCCCGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAC
*
66332269 ATCACTAGCATGAA
66 ATCACTAGCACGAA
*
66332283 TGCTCTTCGGGACTTAGCCTGGATACATCACTAGCACGAATGCTCTTC-GGACTTAGCCCGGATA
1 TGCTCTTCGGGACTTAGCC-CGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATA
66332347 CATCACTAGCACGAA
65 CATCACTAGCACGAA
66332362 TGCTCTTCGGG
1 TGCTCTTCGGG
66332373 GCATGAATGC
Statistics
Matches: 151, Mismatches: 15, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
78 58 0.38
79 59 0.39
80 34 0.23
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (79 bp):
TGCTCTTCGGGACTTAGCCCGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAC
ATCACTAGCACGAA
Found at i:66332325 original size:118 final size:119
Alignment explanation
Indices: 66332117--66332372 Score: 390
Period size: 118 Copynumber: 2.2 Consensus size: 119
66332107 ACACGTCAGC
* * **
66332117 AGCATGATTGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGGGTTTAG
1 AGCATGAATGCTCTTCGGGACCTAGCCCGGATACAACACCAGCACGAATGCTCTTCGGGACTTAG
*
66332182 CACGGATATATCACTAGCACGAATGCTCTTCGAACTTAGCCC-GATACATCACT
66 CACGGATACATCACTAGCACGAATGCTCTTCGAACTTAGCCCGGATACATCACT
* * * *
66332235 AGCATGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGACTTAG
1 AGCATGAATGCTCTTCGGGACCTAGCCCGGATACAACACCAGCACGAATGCTCTTCGGGACTTAG
*
66332300 C-CTGGATACATCACTAGCACGAATGCTCTTCGGACTTAGCCCGGATACATCACT
66 CAC-GGATACATCACTAGCACGAATGCTCTTCGAACTTAGCCCGGATACATCACT
*
66332354 AGCACGAATGCTCTTCGGG
1 AGCATGAATGCTCTTCGGG
66332373 GCATGAATGC
Statistics
Matches: 125, Mismatches: 11, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
117 1 0.01
118 95 0.76
119 29 0.23
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (119 bp):
AGCATGAATGCTCTTCGGGACCTAGCCCGGATACAACACCAGCACGAATGCTCTTCGGGACTTAG
CACGGATACATCACTAGCACGAATGCTCTTCGAACTTAGCCCGGATACATCACT
Found at i:66332409 original size:58 final size:57
Alignment explanation
Indices: 66332320--66332430 Score: 186
Period size: 58 Copynumber: 1.9 Consensus size: 57
66332310 TCACTAGCAC
*
66332320 GAATGCTCTTCGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGGCAT
1 GAATGCTCTTCGAACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGGCAT
* *
66332377 GAATGCTCTTCGAAACTTATCCCGGATACATCACTAGCATGAATGCTCTTCGGG
1 GAATGCTCTTCG-AACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGG
66332431 ACATAGTCCG
Statistics
Matches: 50, Mismatches: 3, Indels: 1
0.93 0.06 0.02
Matches are distributed among these distances:
57 12 0.24
58 38 0.76
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (57 bp):
GAATGCTCTTCGAACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGGCAT
Found at i:66332570 original size:38 final size:38
Alignment explanation
Indices: 66332501--66332575 Score: 107
Period size: 38 Copynumber: 2.0 Consensus size: 38
66332491 GAATTTTAAT
*
66332501 CCGGACATAATCTCTGTACATAGCCATCGGGTCTTTAC
1 CCGGACATAATCTCTGTACATAGCCAGCGGGTCTTTAC
* *
66332539 CCGGACATAATCTCT-TCATATAGTCAGCGGGTCTTTA
1 CCGGACATAATCTCTGT-ACATAGCCAGCGGGTCTTTA
66332576 AACTCGGATT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
37 1 0.03
38 32 0.97
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.31
Consensus pattern (38 bp):
CCGGACATAATCTCTGTACATAGCCAGCGGGTCTTTAC
Found at i:66335066 original size:47 final size:47
Alignment explanation
Indices: 66335003--66335496 Score: 827
Period size: 47 Copynumber: 10.6 Consensus size: 47
66334993 CCCTTCGGGA
* * *
66335003 CTTATCACATTTATACACTTCCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
66335050 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
66335097 CTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
66335144 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
66335191 CTTATCAC--ATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
66335236 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
66335283 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
66335330 CTTATCACATATATACACTTTCACATTCATCACA-TGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
66335376 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
66335423 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
66335470 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
66335497 TATTCAAATA
Statistics
Matches: 429, Mismatches: 13, Indels: 10
0.95 0.03 0.02
Matches are distributed among these distances:
45 42 0.10
46 48 0.11
47 339 0.79
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:66335333 original size:186 final size:185
Alignment explanation
Indices: 66335003--66335496 Score: 812
Period size: 186 Copynumber: 2.6 Consensus size: 185
66334993 CCCTTCGGGA
* *
66335003 CTTATCACATTTATACACTTCCACATCCATCACATTGGCCATTCGGCCTTATCACATATATACAC
1 CTTATCACA--TATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
* *
66335068 TTTCACATTCATCACATTGGCCATTCGGCCTTATCTCATATATGCA-TGTTCACATTCATCACAT
64 TTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACT-TTCACATTCATCACAT
* *
66335132 TGGCCATTCGGCCTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
128 TGGCCATTAGGCCTTATCACACATACACACT-TTCACATTCATCACA-TGGCCATTAGGC
66335191 CTTATCACATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTT
1 CTTATCACATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTT
66335256 TCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATTGG
66 TCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATTGG
* *
66335321 CCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATGGCCATTAGGC
131 CCATTAGGCCTTATCACACATACACACTTTCACATTCATCACATGGCCATTAGGC
* *
66335376 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCAC--ATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
*
66335441 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACACTTTCACATT
64 TTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATT
66335497 TATTCAAATA
Statistics
Matches: 291, Mismatches: 11, Indels: 9
0.94 0.04 0.03
Matches are distributed among these distances:
185 19 0.07
186 153 0.53
187 110 0.38
188 9 0.03
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.34
Consensus pattern (185 bp):
CTTATCACATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTT
TCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATTGG
CCATTAGGCCTTATCACACATACACACTTTCACATTCATCACATGGCCATTAGGC
Found at i:66336862 original size:84 final size:84
Alignment explanation
Indices: 66336751--66336927 Score: 329
Period size: 84 Copynumber: 2.1 Consensus size: 84
66336741 ATATTTATTG
*
66336751 CCCATGCCCTTTATTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATG-TTTT
1 CCCATGCTCTTTATTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTTT
66336815 AGCCATAACATCTTGTCCA
66 AGCCATAACATCTTGTCCA
66336834 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTA-TTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
66336899 TAGCCATAACATCTTGTCCA
65 TAGCCATAACATCTTGTCCA
66336919 CCCATGCTC
1 CCCATGCTC
66336928 ATGGCCGGCC
Statistics
Matches: 91, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
83 12 0.13
84 47 0.52
85 32 0.35
ACGTcount: A:0.27, C:0.28, G:0.08, T:0.37
Consensus pattern (84 bp):
CCCATGCTCTTTATTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTTT
AGCCATAACATCTTGTCCA
Found at i:66341125 original size:50 final size:49
Alignment explanation
Indices: 66340924--66341207 Score: 243
Period size: 50 Copynumber: 5.7 Consensus size: 49
66340914 AATTATACAC
* *
66340924 TCACATCCATCACATTGG-CATTCGGCCTTATCACCATATATAC-CACT-T
1 TCACATTCATCACATTGGCCATTCGGCCTTATCACCACAT-TACACA-TGT
* *
66340972 TCACCATTTCATCCACATT-GCCATTCCGCTTTATCA--ACATTACACATGT
1 TCA-CA-TTCAT-CACATTGGCCATTCGGCCTTATCACCACATTACACATGT
*
66341021 TCCACA-TCAATCACATTGGCCATTCGGCCCTATCA-CACATTACACATGGT
1 T-CACATTC-ATCACATTGGCCATTCGGCCTTATCACCACATTACACAT-GT
66341071 TCACATTCATCACGATTGGCCATTC-GCCTTCATCACCACATTCACACATG-
1 TCACATTCATCAC-ATTGGCCATTCGGCCTT-ATCACCACATT-ACACATGT
*
66341121 TCACATTCATCACACTTGGCCATTCGGCCTTATCA-CATATAATACAC-T-T
1 TCACATTCATCACA-TTGGCCATTCGGCCTTATCACCACAT--TACACATGT
** *
66341170 TCCACATTCATTTCACTGGCCATTCGCGCGCTTATCAC
1 T-CACATTCATCACATTGGCCATTCG-GC-CTTATCAC
66341208 ATAATACTAC
Statistics
Matches: 199, Mismatches: 12, Indels: 46
0.77 0.05 0.18
Matches are distributed among these distances:
47 8 0.04
48 23 0.12
49 52 0.26
50 71 0.36
51 39 0.20
52 6 0.03
ACGTcount: A:0.26, C:0.34, G:0.10, T:0.31
Consensus pattern (49 bp):
TCACATTCATCACATTGGCCATTCGGCCTTATCACCACATTACACATGT
Found at i:66341176 original size:100 final size:94
Alignment explanation
Indices: 66340924--66341180 Score: 274
Period size: 100 Copynumber: 2.6 Consensus size: 94
66340914 AATTATACAC
*
66340924 TCACATCCATCACATTGG-CATTCGGCCTTATCACCATATATACCACTTTCACCATTTCATCCAC
1 TCACATTCATCACATTGGCCATTCGGCCTTATCA-CATATATA-CACTTTCA-CA-TTCATCCAC
*
66340988 ATTGCCATTCCGCTTTATCAACATTACACATGT
62 ATTGCCATTCCGCTTCATCAACATTACACATGT
* *
66341021 TCCACA-TCAATCACATTGGCCATTCGGCCCTATCACACAT-TACACATGGTTCACATTCAT-CA
1 T-CACATTC-ATCACATTGGCCATTCGGCCTTATCACATATATACAC-T--TTCACATTCATCCA
66341083 CGATTGGCCATT-CGCCTTCATCACCACATTCACACATG-
61 C-ATT-GCCATTCCG-CTTCATCA--ACATT-ACACATGT
66341121 TCACATTCATCACACTTGGCCATTCGGCCTTATCACATATAATACACTTTCCACATTCAT
1 TCACATTCATCACA-TTGGCCATTCGGCCTTATCACATAT-ATACACTTT-CACATTCAT
66341181 TTCACTGGCC
Statistics
Matches: 137, Mismatches: 6, Indels: 31
0.79 0.03 0.18
Matches are distributed among these distances:
96 6 0.04
97 15 0.11
98 33 0.24
99 30 0.22
100 40 0.29
101 8 0.06
102 5 0.04
ACGTcount: A:0.27, C:0.33, G:0.09, T:0.31
Consensus pattern (94 bp):
TCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCCACATTG
CCATTCCGCTTCATCAACATTACACATGT
Found at i:66341221 original size:50 final size:49
Alignment explanation
Indices: 66340925--66341437 Score: 212
Period size: 50 Copynumber: 10.4 Consensus size: 49
66340915 ATTATACACT
* *
66340925 CACATCCATCACA-TTGG-CATTCGGCCTTATCACCATATATACCACTTT-
1 CACATTCATCACACTTGGCCATTCGGCCTTATCACAATA-ATA-CACTTTC
* *
66340973 CACCATTTCATC-CACATT-GCCATTCCGCTTTATCA-ACAT--TACACATGTTC
1 CA-CA-TTCATCACAC-TTGGCCATTCGGCCTTATCACA-ATAATACAC-T-TTC
*
66341023 CACA-TCAATCACA-TTGGCCATTCGGCCCTATCACACAT--TACACATGGTT-
1 CACATTC-ATCACACTTGGCCATTCGGCCTTATCACA-ATAATACAC-T--TTC
* * * *
66341072 CACATTCATCACGA-TTGGCCATTC-GCCTTCATCACCACATTCACACATGT-
1 CACATTCATCAC-ACTTGGCCATTCGGCCTT-ATCACAATAAT-ACAC-TTTC
66341122 CACATTCATCACACTTGGCCATTCGGCCTTATCACATATAATACACTTTC
1 CACATTCATCACACTTGGCCATTCGGCCTTATCACA-ATAATACACTTTC
**
66341172 CACATTCATTTCAC-TGGCCATTCGCGCGCTTATCAC-ATAATACTACTTT-
1 CACATTCATCACACTTGGCCATTCG-GC-CTTATCACAATAATAC-ACTTTC
* * *
66341221 CAC--TCATCACA-TCGGACCATTAGAGCCTTACTCACATATTCTATACACTTT-
1 CACATTCATCACACTTGG-CCATTCG-GCCTTA-TCACA-A-T-AATACACTTTC
* ** * *
66341272 CACACTTCATCACA-TCGG-CATGAGGACTCTAT-ACTCAT-ATACAGCTTT-
1 CACA-TTCATCACACTTGGCCATTCGGCCT-TATCAC-AATAATACA-CTTTC
* * * *
66341320 CACATTTCATCACA-TCGGCGATTAGGCCTTATCACACTATATACACTTT-
1 CACA-TTCATCACACTTGGCCATTCGGCCTTATCACAATA-ATACACTTTC
* * * * *
66341369 CA-AGTCATCGCA-TCGGCCATT-AGCCTTATCACTATATATGACACTTT-
1 CACATTCATCACACTTGGCCATTCGGCCTTATCACAATA-AT-ACACTTTC
*
66341416 CACATTCATCACAGTTGGCCAT
1 CACATTCATCACACTTGGCCAT
66341438 AGCCTACACA
Statistics
Matches: 377, Mismatches: 41, Indels: 93
0.74 0.08 0.18
Matches are distributed among these distances:
46 15 0.04
47 48 0.13
48 68 0.18
49 81 0.21
50 89 0.24
51 47 0.12
52 17 0.05
54 12 0.03
ACGTcount: A:0.27, C:0.32, G:0.10, T:0.31
Consensus pattern (49 bp):
CACATTCATCACACTTGGCCATTCGGCCTTATCACAATAATACACTTTC
Found at i:66341413 original size:47 final size:47
Alignment explanation
Indices: 66341127--66341437 Score: 187
Period size: 48 Copynumber: 6.3 Consensus size: 47
66341117 CATGTCACAT
* * *
66341127 TCATCACACTTGGCCATTCGGCCTTATCACA-TATAATACACTTTCCACAT
1 TCATCACA-TCGGCCATTAGGCCTTATCACACTAT-ATACACTTT-CA-AG
* *
66341177 TCATTTCAC-T-GGCCATTCGCGCGCTTATCACA-TA-ATACTACTTTC-AC
1 TCA--TCACATCGGCCATTAG-GC-CTTATCACACTATATAC-ACTTTCAAG
*
66341224 TCATCACATCGGACCATTAGAGCCTTACTCACA-TATTCTATACACTTTCACACT
1 TCATCACATCGG-CCATTAG-GCCTTA-TCACACTA---TATACACTTTCA-A-G
* * * *
66341278 TCATCACATCGG-CATGAGGACTCTAT-ACTC-ATATACAGCTTTCACATT
1 TCATCACATCGGCCATTAGGCCT-TATCACACTATATACA-CTTTCA-A-G
*
66341326 TCATCACATCGGCGATTAGGCCTTATCACACTATATACACTTTCAAG
1 TCATCACATCGGCCATTAGGCCTTATCACACTATATACACTTTCAAG
* *
66341373 TCATCGCATCGGCCATTA-GCCTTATCACTA-TATATGACACTTTCACAT
1 TCATCACATCGGCCATTAGGCCTTATCAC-ACTATAT-ACACTTTCA-AG
*
66341421 TCATCACAGTTGGCCAT
1 TCATCACA-TCGGCCAT
66341438 AGCCTACACA
Statistics
Matches: 217, Mismatches: 18, Indels: 53
0.75 0.06 0.18
Matches are distributed among these distances:
45 4 0.02
46 16 0.07
47 42 0.19
48 48 0.22
49 37 0.17
50 21 0.10
51 21 0.10
52 15 0.07
53 1 0.00
54 12 0.06
ACGTcount: A:0.28, C:0.30, G:0.11, T:0.32
Consensus pattern (47 bp):
TCATCACATCGGCCATTAGGCCTTATCACACTATATACACTTTCAAG
Found at i:66342916 original size:87 final size:86
Alignment explanation
Indices: 66342764--66342928 Score: 230
Period size: 87 Copynumber: 1.9 Consensus size: 86
66342754 ATTTTATTGC
*
66342764 CCATGCCCTTTATTTTATTACTCCTACATAATGCATACCCCAACATGTTTATGAACATGTTTTTT
1 CCATGCCCTTTATTTTAATACTCCTACATAATGCATACCCCAACATGTTTATGAACATG-TTTTT
66342829 TAG-CCATAACATCTTGCTCAT
65 TAGCCCATAACATCTTGCTCAT
*
66342850 CCATGCTCTTTATTTATAATAC-CCTTACATAATGCACTACCCCAAACATTGTTTATG-ACATG-
1 CCATGCCCTTTATTT-TAATACTCC-TACATAATGCA-TACCCC-AACA-TGTTTATGAACATGT
66342912 TTTTTAGCCCATAACAT
61 TTTTTAGCCCATAACAT
66342929 ATTGTCCACC
Statistics
Matches: 71, Mismatches: 2, Indels: 10
0.86 0.02 0.12
Matches are distributed among these distances:
86 16 0.23
87 23 0.32
88 15 0.21
89 9 0.13
90 8 0.11
ACGTcount: A:0.28, C:0.25, G:0.08, T:0.38
Consensus pattern (86 bp):
CCATGCCCTTTATTTTAATACTCCTACATAATGCATACCCCAACATGTTTATGAACATGTTTTTT
AGCCCATAACATCTTGCTCAT
Found at i:66342942 original size:88 final size:85
Alignment explanation
Indices: 66342763--66342944 Score: 228
Period size: 88 Copynumber: 2.1 Consensus size: 85
66342753 AATTTTATTG
*
66342763 CCCATGCCCTTTATTTTATTACTCCTACATAATGCATACCCCAACATGTTTATGAACATGTTTTT
1 CCCATGCCCTTTATTTTAATACTCCTACATAATGCATACCCCAACATGTTTATGAACATG-TTTT
*
66342828 TTAGCCATAACATCTTGCTCA
65 TTAGCCATAACATATTGCTCA
* *
66342849 TCCATGCTCTTTATTTATAATAC-CCTTACATAATGCACTACCCCAAACATTGTTTATG-ACATG
1 CCCATGCCCTTTATTT-TAATACTCC-TACATAATGCA-TACCCC-AACA-TGTTTATGAACATG
66342912 -TTTTTAGCCCATAACATATTG-TCCA
61 TTTTTTAG-CCATAACATATTGCT-CA
66342937 CCCATGCC
1 CCCATGCC
66342945 TCATGGCCGG
Statistics
Matches: 83, Mismatches: 6, Indels: 12
0.82 0.06 0.12
Matches are distributed among these distances:
86 16 0.19
87 24 0.29
88 26 0.31
89 9 0.11
90 8 0.10
ACGTcount: A:0.27, C:0.27, G:0.08, T:0.37
Consensus pattern (85 bp):
CCCATGCCCTTTATTTTAATACTCCTACATAATGCATACCCCAACATGTTTATGAACATGTTTTT
TAGCCATAACATATTGCTCA
Found at i:66344471 original size:44 final size:41
Alignment explanation
Indices: 66344375--66344514 Score: 167
Period size: 41 Copynumber: 3.3 Consensus size: 41
66344365 TAGCATGACG
**
66344375 ATGCGTCTGTCGGGACTTTAGCCCGGAT-ACATCACCTAC-TTGA
1 ATGC-TCT-TCGGGAC-TTAGCCCGGATAACATCA-CTACAACGA
* *
66344418 ATGCTCTTCGGGACTTAGCCCGCGATTACATCACTAGCCACGA
1 ATGCTCTTCGGGACTTAGCCCG-GATAACATCACTA-CAACGA
66344461 ATTGCTCTTCGGGACTTAGCCCGGATAACATCACTACAACGA
1 A-TGCTCTTCGGGACTTAGCCCGGATAACATCACTACAACGA
66344503 ATGCTCTTCGGG
1 ATGCTCTTCGGG
66344515 CATTGTAATG
Statistics
Matches: 88, Mismatches: 4, Indels: 12
0.85 0.04 0.12
Matches are distributed among these distances:
40 8 0.09
41 24 0.27
42 16 0.18
43 19 0.22
44 21 0.24
ACGTcount: A:0.23, C:0.29, G:0.22, T:0.26
Consensus pattern (41 bp):
ATGCTCTTCGGGACTTAGCCCGGATAACATCACTACAACGA
Found at i:66347419 original size:49 final size:45
Alignment explanation
Indices: 66347180--66347455 Score: 211
Period size: 50 Copynumber: 5.7 Consensus size: 45
66347170 CTCCACATCG
* *
66347180 CATCACATGGCCATTCGGCTTATCACATAATATACAC-TTCACATT
1 CATCACATTGCCATTCGCCTTATCACAT-ATATACACTTTCACATT
* * *
66347225 CATCACATTGGCCAGTCATGCCTTATCTCATA-ATGCA-TGTTCCACATT
1 CATCACATT-GCCATTC--GCCTTATCACATATATACACT-TT-CACATT
* *
66347273 CATCACATTGGCCCATTCGGCCTTCATC-CACACATACACATGGTTCACA-T
1 CATCACATT-G-CCATTC-GCCTT-ATCACATATATACAC-T--TTCACATT
*
66347323 CACTCAACATTGCCATTCGGCCTTATCACATAGTATGCACTTTTCACATT
1 CA-TC-ACATTGCCATTC-GCCTTATCACATA-TATACAC-TTTCACATT
*
66347373 CAATCTCAATTGACCATTCGCCTTATCACATATAGTACACTTTCACATT
1 C-ATCAC-ATTG-CCATTCGCCTTATCACATATA-TACACTTTCACATT
* *
66347422 CATCACATCGGCCATTAGCCTTATCACATATATA
1 CATCACAT-TGCCATTCGCCTTATCACATATATA
66347456 TACCACTTTC
Statistics
Matches: 191, Mismatches: 18, Indels: 43
0.76 0.07 0.17
Matches are distributed among these distances:
45 8 0.04
46 12 0.06
47 25 0.13
48 40 0.21
49 34 0.18
50 43 0.23
51 21 0.11
52 8 0.04
ACGTcount: A:0.28, C:0.30, G:0.10, T:0.32
Consensus pattern (45 bp):
CATCACATTGCCATTCGCCTTATCACATATATACACTTTCACATT
Found at i:66347637 original size:50 final size:50
Alignment explanation
Indices: 66347555--66347675 Score: 150
Period size: 51 Copynumber: 2.5 Consensus size: 50
66347545 GCCTTATCCA
66347555 AATATATA-ACTTTCA-ATTCA-TCACATCGGCCA-TTAGGCGC-TTTCAC
1 AATATATACACTTTCACATTCATTCACATCGGCCATTTAGGC-CTTTTCAC
66347601 AATATATAACACTTTCACCATTCATTCACAT-GGCCATTTAGGCCTTTTCAC
1 AATATAT-ACACTTTCA-CATTCATTCACATCGGCCATTTAGGCCTTTTCAC
*
66347652 -ATATATACAC-TTCACATTTATTCA
1 AATATATACACTTTCACATTCATTCA
66347676 ATATACTTCA
Statistics
Matches: 67, Mismatches: 1, Indels: 13
0.83 0.01 0.16
Matches are distributed among these distances:
46 7 0.10
47 10 0.15
48 11 0.16
49 4 0.06
50 17 0.25
51 18 0.27
ACGTcount: A:0.31, C:0.26, G:0.07, T:0.36
Consensus pattern (50 bp):
AATATATACACTTTCACATTCATTCACATCGGCCATTTAGGCCTTTTCAC
Found at i:66349025 original size:40 final size:40
Alignment explanation
Indices: 66348981--66349087 Score: 148
Period size: 38 Copynumber: 2.7 Consensus size: 40
66348971 GCTACTTGCT
* *
66348981 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCAGGACTTAGCCCGGTTATAGTAACTAGCA
* *
66349021 CAAATGCCTT-AGG-CTTAGCCCGG-AATTAGTCACTAGCA
1 CAAATGCCTTCAGGACTTAGCCCGGTTA-TAGTAACTAGCA
66349059 CAAATGCCTTCAGGACTTAGCCCGGTTAT
1 CAAATGCCTTCAGGACTTAGCCCGGTTAT
66349088 CATCCGAATA
Statistics
Matches: 58, Mismatches: 5, Indels: 8
0.82 0.07 0.11
Matches are distributed among these distances:
37 1 0.02
38 30 0.52
39 5 0.09
40 21 0.36
41 1 0.02
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCAGGACTTAGCCCGGTTATAGTAACTAGCA
Found at i:66349060 original size:38 final size:40
Alignment explanation
Indices: 66348948--66349083 Score: 147
Period size: 40 Copynumber: 3.5 Consensus size: 40
66348938 AAACCAAGTA
* * * *
66348948 CCTTCAGAATTTAG-CCGGATATAGCT-ACTTGCTCAAATG
1 CCTTCAGGACTTAGCCCGGATATAG-TAACTAGCACAAATG
* * *
66348987 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCAGGACTTAGCCCGGATATAGTAACTAGCACAAATG
*
66349027 CCTT-AGG-CTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCAGGACTTAGCCCGGATA-TAGTAACTAGCACAAATG
66349065 CCTTCAGGACTTAGCCCGG
1 CCTTCAGGACTTAGCCCGG
66349084 TTATCATCCG
Statistics
Matches: 82, Mismatches: 10, Indels: 9
0.81 0.10 0.09
Matches are distributed among these distances:
37 1 0.01
38 30 0.37
39 17 0.21
40 34 0.41
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (40 bp):
CCTTCAGGACTTAGCCCGGATATAGTAACTAGCACAAATG
Found at i:66353500 original size:29 final size:29
Alignment explanation
Indices: 66353465--66353525 Score: 122
Period size: 29 Copynumber: 2.1 Consensus size: 29
66353455 ATTCGGCCAT
66353465 TCATCACTCAAACCTATCAAAGCTTCATA
1 TCATCACTCAAACCTATCAAAGCTTCATA
66353494 TCATCACTCAAACCTATCAAAGCTTCATA
1 TCATCACTCAAACCTATCAAAGCTTCATA
66353523 TCA
1 TCA
66353526 AACTTCCTTG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.38, C:0.31, G:0.03, T:0.28
Consensus pattern (29 bp):
TCATCACTCAAACCTATCAAAGCTTCATA
Found at i:66359239 original size:16 final size:18
Alignment explanation
Indices: 66359220--66359252 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
66359210 CATACAAATT
66359220 CCAAAAC-ATA-ATAGTA
1 CCAAAACGATAGATAGTA
66359236 CCAAAACGATAGATAGT
1 CCAAAACGATAGATAGT
66359253 GTGATGAGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 3 0.20
18 5 0.33
ACGTcount: A:0.52, C:0.18, G:0.12, T:0.18
Consensus pattern (18 bp):
CCAAAACGATAGATAGTA
Found at i:66362042 original size:12 final size:11
Alignment explanation
Indices: 66362022--66362057 Score: 56
Period size: 12 Copynumber: 3.3 Consensus size: 11
66362012 ACATGTTGAA
66362022 TTTTAATTAAT
1 TTTTAATTAAT
66362033 TTTATAATTAAT
1 TTT-TAATTAAT
66362045 TTTT-ATTAAT
1 TTTTAATTAAT
66362055 TTT
1 TTT
66362058 GGTTGCTTTC
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
10 9 0.38
11 4 0.17
12 11 0.46
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (11 bp):
TTTTAATTAAT
Found at i:66365609 original size:63 final size:63
Alignment explanation
Indices: 66365510--66365636 Score: 254
Period size: 63 Copynumber: 2.0 Consensus size: 63
66365500 AAAAGAAGAA
66365510 GTAAGAGATTCAATTCAAGAAGTTCCTAAACGTACTCAAGCAACTCCATATCAACATCCCGCT
1 GTAAGAGATTCAATTCAAGAAGTTCCTAAACGTACTCAAGCAACTCCATATCAACATCCCGCT
66365573 GTAAGAGATTCAATTCAAGAAGTTCCTAAACGTACTCAAGCAACTCCATATCAACATCCCGCT
1 GTAAGAGATTCAATTCAAGAAGTTCCTAAACGTACTCAAGCAACTCCATATCAACATCCCGCT
66365636 G
1 G
66365637 GTTAAAGCAC
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
63 64 1.00
ACGTcount: A:0.36, C:0.27, G:0.13, T:0.24
Consensus pattern (63 bp):
GTAAGAGATTCAATTCAAGAAGTTCCTAAACGTACTCAAGCAACTCCATATCAACATCCCGCT
Found at i:66367519 original size:59 final size:59
Alignment explanation
Indices: 66367446--66367567 Score: 235
Period size: 59 Copynumber: 2.1 Consensus size: 59
66367436 CCAAAATTGC
66367446 TAAACCCTTGTGCAAATTATTAGAGAAGGACACGACCTTCAAGTTTGATGAGGAATGCT
1 TAAACCCTTGTGCAAATTATTAGAGAAGGACACGACCTTCAAGTTTGATGAGGAATGCT
*
66367505 TAAACCTTTGTGCAAATTATTAGAGAAGGACACGACCTTCAAGTTTGATGAGGAATGCT
1 TAAACCCTTGTGCAAATTATTAGAGAAGGACACGACCTTCAAGTTTGATGAGGAATGCT
66367564 TAAA
1 TAAA
66367568 GGCTTTCAAA
Statistics
Matches: 62, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
59 62 1.00
ACGTcount: A:0.35, C:0.16, G:0.21, T:0.28
Consensus pattern (59 bp):
TAAACCCTTGTGCAAATTATTAGAGAAGGACACGACCTTCAAGTTTGATGAGGAATGCT
Found at i:66369887 original size:17 final size:18
Alignment explanation
Indices: 66369867--66369902 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
66369857 TAATCTCGTT
66369867 TTAATAAATTAATA-GCA
1 TTAATAAATTAATATGCA
*
66369884 TTAATAATTTAATATGCA
1 TTAATAAATTAATATGCA
66369902 T
1 T
66369903 ATATTTGCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 13 0.76
18 4 0.24
ACGTcount: A:0.47, C:0.06, G:0.06, T:0.42
Consensus pattern (18 bp):
TTAATAAATTAATATGCA
Found at i:66371518 original size:18 final size:18
Alignment explanation
Indices: 66371487--66371525 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
66371477 TGTAACAACC
* *
66371487 TAATTTTCGGGATTTTCG
1 TAATTCTCGAGATTTTCG
*
66371505 TAATTCTCGAGATTTTGG
1 TAATTCTCGAGATTTTCG
66371523 TAA
1 TAA
66371526 ATTTTGTAAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.23, C:0.10, G:0.21, T:0.46
Consensus pattern (18 bp):
TAATTCTCGAGATTTTCG
Found at i:66373230 original size:11 final size:11
Alignment explanation
Indices: 66373204--66373268 Score: 62
Period size: 11 Copynumber: 6.1 Consensus size: 11
66373194 ATTTTGATAT
66373204 ACATGATATG-
1 ACATGATATGC
66373214 ACATGATATGC
1 ACATGATATGC
66373225 ACATGATATG-
1 ACATGATATGC
** *
66373235 TTATGAGATGC
1 ACATGATATGC
*
66373246 ACATGATATAC
1 ACATGATATGC
* *
66373257 TCATTATATGC
1 ACATGATATGC
66373268 A
1 A
66373269 TGGGTTGGGT
Statistics
Matches: 42, Mismatches: 11, Indels: 3
0.75 0.20 0.05
Matches are distributed among these distances:
10 17 0.40
11 25 0.60
ACGTcount: A:0.37, C:0.14, G:0.17, T:0.32
Consensus pattern (11 bp):
ACATGATATGC
Found at i:66373230 original size:21 final size:21
Alignment explanation
Indices: 66373204--66373254 Score: 75
Period size: 21 Copynumber: 2.4 Consensus size: 21
66373194 ATTTTGATAT
*
66373204 ACATGATATGACATGATATGC
1 ACATGATATGACATGAGATGC
**
66373225 ACATGATATGTTATGAGATGC
1 ACATGATATGACATGAGATGC
66373246 ACATGATAT
1 ACATGATAT
66373255 ACTCATTATA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.37, C:0.12, G:0.20, T:0.31
Consensus pattern (21 bp):
ACATGATATGACATGAGATGC
Found at i:66373266 original size:32 final size:31
Alignment explanation
Indices: 66373206--66373266 Score: 77
Period size: 32 Copynumber: 1.9 Consensus size: 31
66373196 TTTGATATAC
* *
66373206 ATGATATGACATGATATGCACATGATATGTT
1 ATGAGATGACATGATATACACATGATATGTT
* *
66373237 ATGAGATGCACATGATATACTCATTATATG
1 ATGAGATG-ACATGATATACACATGATATG
66373267 CATGGGTTGG
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
31 7 0.28
32 18 0.72
ACGTcount: A:0.36, C:0.11, G:0.18, T:0.34
Consensus pattern (31 bp):
ATGAGATGACATGATATACACATGATATGTT
Found at i:66373334 original size:24 final size:24
Alignment explanation
Indices: 66373302--66373348 Score: 60
Period size: 25 Copynumber: 2.0 Consensus size: 24
66373292 AGGAAGTGCA
**
66373302 AAAAGGGCTTTGCC-CCAGTTATT
1 AAAAGGGCTAGGCCTCCAGTTATT
66373325 AAAAGAGGCTAGGCCTCCAGTTAT
1 AAAAG-GGCTAGGCCTCCAGTTAT
66373349 GATAAAGCAG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 5 0.25
24 7 0.35
25 8 0.40
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTAGGCCTCCAGTTATT
Found at i:66373607 original size:30 final size:31
Alignment explanation
Indices: 66373540--66373622 Score: 111
Period size: 31 Copynumber: 2.7 Consensus size: 31
66373530 CACTTACAGT
66373540 AAAGGCTTCGGCCCAGTGATATGAATTTGGA
1 AAAGGCTTCGGCCCAGTGATATGAATTTGGA
66373571 AAAGGCTTCGGCCCAGTG-TAATGAATTAT-G-
1 AAAGGCTTCGGCCCAGTGAT-ATGAATT-TGGA
*
66373601 AAAGGCTTCAGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
66373623 TTGAGGTTGA
Statistics
Matches: 48, Mismatches: 1, Indels: 8
0.84 0.02 0.14
Matches are distributed among these distances:
29 3 0.06
30 18 0.38
31 26 0.54
32 1 0.02
ACGTcount: A:0.30, C:0.18, G:0.27, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGAATTTGGA
Found at i:66377366 original size:26 final size:27
Alignment explanation
Indices: 66377331--66377395 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
66377321 AATTAATTCA
* * *
66377331 CACACATAGTGCTTA-AATCCAACTCG
1 CACACTTAGTGCTCAGAATCAAACTCG
* *
66377357 CACACTTAGTGCTCAGTATCAAATTCG
1 CACACTTAGTGCTCAGAATCAAACTCG
66377384 CACACTTAGTGC
1 CACACTTAGTGC
66377396 ATCTCTCAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
26 13 0.39
27 20 0.61
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.26
Consensus pattern (27 bp):
CACACTTAGTGCTCAGAATCAAACTCG
Found at i:66379942 original size:25 final size:25
Alignment explanation
Indices: 66379899--66379992 Score: 118
Period size: 25 Copynumber: 3.8 Consensus size: 25
66379889 GGAAGTGCTA
* * *
66379899 AAAGGGCTCTGTCCCAGTTTA-CCG
1 AAAGGGCTTTGCCCCAGTTTATCAG
*
66379923 AAAAGGGCTTTGCCCTAGTTTATCAG
1 -AAAGGGCTTTGCCCCAGTTTATCAG
*
66379949 AAAGGGCTTTCCCCCAGTTTATCAG
1 AAAGGGCTTTGCCCCAGTTTATCAG
*
66379974 AAAGGGCTTTACCCCAGTT
1 AAAGGGCTTTGCCCCAGTT
66379993 ATTAAAAGAG
Statistics
Matches: 61, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
25 59 0.97
26 2 0.03
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (25 bp):
AAAGGGCTTTGCCCCAGTTTATCAG
Found at i:66380199 original size:42 final size:42
Alignment explanation
Indices: 66380140--66380273 Score: 241
Period size: 42 Copynumber: 3.2 Consensus size: 42
66380130 TAGTCTCCCC
*
66380140 AAATGGGCTTGCATACATTCATTGACATTACATATGATATTG
1 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
66380182 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
* *
66380224 AAATGGGCTTGTATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
66380266 AAATGGGC
1 AAATGGGC
66380274 CTAAGGGCCA
Statistics
Matches: 89, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
42 89 1.00
ACGTcount: A:0.32, C:0.14, G:0.19, T:0.34
Consensus pattern (42 bp):
AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
Found at i:66380332 original size:31 final size:31
Alignment explanation
Indices: 66380297--66380380 Score: 152
Period size: 31 Copynumber: 2.7 Consensus size: 31
66380287 AGTTTATAGT
66380297 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
66380328 AAAGGCTTCGGCCCAGTGATATGATTTATGG
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
66380359 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
66380381 TCAAGACTAA
Statistics
Matches: 52, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
30 5 0.10
31 47 0.90
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.27
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:66383137 original size:27 final size:28
Alignment explanation
Indices: 66383107--66383163 Score: 71
Period size: 28 Copynumber: 2.1 Consensus size: 28
66383097 TATTTAGTAT
* *
66383107 CAGTA-CAGTCTCGGCCTTAGCCCTATG
1 CAGTAGCAGTCTCGGCCTAAGCCCAATG
* *
66383134 CAGTAGCAGTGTGGGCCTAAGCCCAATG
1 CAGTAGCAGTCTCGGCCTAAGCCCAATG
66383162 CA
1 CA
66383164 ATCTTAGTAC
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
27 5 0.20
28 20 0.80
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.21
Consensus pattern (28 bp):
CAGTAGCAGTCTCGGCCTAAGCCCAATG
Found at i:66383354 original size:27 final size:27
Alignment explanation
Indices: 66383296--66383360 Score: 69
Period size: 27 Copynumber: 2.4 Consensus size: 27
66383286 AGCAAAGCTG
* * *
66383296 CCAGAAACAGTAAATGTGGCAAAGTCG
1 CCAGTAACAGTAAATGTGACAAAGTCA
* * *
66383323 GCAGTAACAGTGAATGTGACATAGTCA
1 CCAGTAACAGTAAATGTGACAAAGTCA
66383350 CCAGTAA-AGTA
1 CCAGTAACAGTA
66383361 CTTCCTCCAT
Statistics
Matches: 30, Mismatches: 8, Indels: 1
0.77 0.21 0.03
Matches are distributed among these distances:
26 3 0.10
27 27 0.90
ACGTcount: A:0.40, C:0.17, G:0.25, T:0.18
Consensus pattern (27 bp):
CCAGTAACAGTAAATGTGACAAAGTCA
Found at i:66383526 original size:27 final size:27
Alignment explanation
Indices: 66383496--66383695 Score: 240
Period size: 27 Copynumber: 7.4 Consensus size: 27
66383486 GGGCATAATC
* *
66383496 GTCATTTTACCATACAGGGGTATTACG
1 GTCATTTTACCCTACAGGGGCATTACG
66383523 GTCATTTTACCCTACAGGGGCATTACG
1 GTCATTTTACCCTACAGGGGCATTACG
** *
66383550 ACCATTTTATCCTACA-GGGCTATTACG
1 GTCATTTTACCCTACAGGGGC-ATTACG
66383577 GTCATTTTACCCTACAGGGGCATTACG
1 GTCATTTTACCCTACAGGGGCATTACG
* **
66383604 ATCATTTTACCCTACAGGGGCATTATA
1 GTCATTTTACCCTACAGGGGCATTACG
* * *
66383631 GTTATTTTACCCTATAGGGACATTACG
1 GTCATTTTACCCTACAGGGGCATTACG
* * * **
66383658 ATCATTTTACCCTATAGGGGTATTATA
1 GTCATTTTACCCTACAGGGGCATTACG
66383685 GTCATTTTACC
1 GTCATTTTACC
66383696 TATTTTGAGG
Statistics
Matches: 147, Mismatches: 24, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
26 4 0.03
27 139 0.95
28 4 0.03
ACGTcount: A:0.26, C:0.22, G:0.18, T:0.34
Consensus pattern (27 bp):
GTCATTTTACCCTACAGGGGCATTACG
Found at i:66383556 original size:54 final size:54
Alignment explanation
Indices: 66383497--66383695 Score: 281
Period size: 54 Copynumber: 3.7 Consensus size: 54
66383487 GGCATAATCG
* *
66383497 TCATTTTACCATACAGGGGTATTACGGTCATTTTACCCTACAGGGGCATTACGA
1 TCATTTTACCCTACAGGGGTATTACAGTCATTTTACCCTACAGGGGCATTACGA
* * * *
66383551 CCATTTTATCCTACAGGGCTATTACGGTCATTTTACCCTACAGGGGCATTACGA
1 TCATTTTACCCTACAGGGGTATTACAGTCATTTTACCCTACAGGGGCATTACGA
* * * * *
66383605 TCATTTTACCCTACAGGGGCATTATAGTTATTTTACCCTATAGGGACATTACGA
1 TCATTTTACCCTACAGGGGTATTACAGTCATTTTACCCTACAGGGGCATTACGA
* *
66383659 TCATTTTACCCTATAGGGGTATTATAGTCATTTTACC
1 TCATTTTACCCTACAGGGGTATTACAGTCATTTTACC
66383696 TATTTTGAGG
Statistics
Matches: 129, Mismatches: 16, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
54 129 1.00
ACGTcount: A:0.26, C:0.22, G:0.18, T:0.35
Consensus pattern (54 bp):
TCATTTTACCCTACAGGGGTATTACAGTCATTTTACCCTACAGGGGCATTACGA
Found at i:66383965 original size:19 final size:19
Alignment explanation
Indices: 66383930--66383967 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
66383920 ATGTGGGACC
*
66383930 CACGAGCCCATTGGGCCCA
1 CACGAGCCCATTCGGCCCA
66383949 CACGA-CCCATTTCGGCCCA
1 CACGAGCCCA-TTCGGCCCA
66383968 ACGTGGCCCA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 4 0.24
19 13 0.76
ACGTcount: A:0.21, C:0.45, G:0.21, T:0.13
Consensus pattern (19 bp):
CACGAGCCCATTCGGCCCA
Found at i:66386832 original size:8 final size:8
Alignment explanation
Indices: 66386819--66386852 Score: 68
Period size: 8 Copynumber: 4.2 Consensus size: 8
66386809 TACCAACATG
66386819 TTTTATTT
1 TTTTATTT
66386827 TTTTATTT
1 TTTTATTT
66386835 TTTTATTT
1 TTTTATTT
66386843 TTTTATTT
1 TTTTATTT
66386851 TT
1 TT
66386853 AAGGTAAAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 26 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (8 bp):
TTTTATTT
Found at i:66389516 original size:47 final size:47
Alignment explanation
Indices: 66389464--66390946 Score: 2536
Period size: 47 Copynumber: 31.3 Consensus size: 47
66389454 TACATGATAG
66389464 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
*
66389511 TATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
*
66389558 TATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
66389605 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
66389652 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
*
66389699 TATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TA
* *
66389748 TATATGTGATAAGGCCTAATGGCCAATGTGGTGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
66389795 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
*
66389842 TATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
*
66389889 TATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TA
*
66389938 TATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
66389985 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT-TA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
66390031 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
*
66390078 TATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TA
66390127 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
*
66390174 TATATGTGATAAGGCCAAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
66390221 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
*
66390268 TATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TA
* * *
66390317 TATATGTGATAAGGCCTAATGACCAATGTGGTGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
66390364 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
*
66390411 TATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
*
66390458 TATATGTGATAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTATA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TA
*
66390507 TATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
66390554 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
*
66390601 TATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
*
66390648 TATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TA
66390697 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
* *
66390744 TATATGTGATAAGGCCTAATGGCCAATGTGGTGAATGTGAAAGTGTATA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TA
* *
66390793 TATATGTGATAAGGCCTAATGGCCAATGTGGTGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
* * *
66390840 TATATGTGATAAGGCCGAATGACCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
* * * * * *
66390887 TATATGTGATAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
*
66390934 TAAATGTGATAAG
1 TATATGTGATAAG
66390947 TCCCGAAGGG
Statistics
Matches: 1379, Mismatches: 42, Indels: 30
0.95 0.03 0.02
Matches are distributed among these distances:
46 46 0.03
47 1011 0.73
49 322 0.23
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (47 bp):
TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
Found at i:66389797 original size:143 final size:141
Alignment explanation
Indices: 66389464--66390946 Score: 2536
Period size: 143 Copynumber: 10.4 Consensus size: 141
66389454 TACATGATAG
66389464 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTA
* *
66389529 ATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGGTGAAT
66 ATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
66389594 GTGAAAGTGTA
131 GTGAAAGTGTA
66389605 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTA
*
66389670 ATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGGTGAAT
66 ATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
66389735 GTGAAAGTGTATA
131 GTGAAAGTG--TA
* *
66389748 TATATGTGATAAGGCCTAATGGCCAATGTGGTGAATGTGAAAGTGTATATATGTGATAAGGCCTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTA
*
66389813 ATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAAT
66 ATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
66389878 GTGAAAGTGTA
131 GTGAAAGTGTA
*
66389889 TATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
*
66389954 TAATGGCCGATGTGGTGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
64 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
66390019 ATGTGAAAGT-TA
129 ATGTGAAAGTGTA
66390031 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTA
*
66390096 ATGGCCGATGTGGTGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
66 ATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
66390161 ATGTGAAAGTGTA
129 ATGTGAAAGTGTA
*
66390174 TATATGTGATAAGGCCAAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTA
*
66390239 ATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGGTGAAT
66 ATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
66390304 GTGAAAGTGTATA
131 GTGAAAGTG--TA
* * *
66390317 TATATGTGATAAGGCCTAATGACCAATGTGGTGAATGTGAAAGTGTATATATGTGATAAGGCCTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTA
*
66390382 ATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAAT
66 ATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
66390447 GTGAAAGTGTA
131 GTGAAAGTGTA
*
66390458 TATATGTGATAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
*
66390523 TAATGGCCGATGTGGTGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
64 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
66390588 ATGTGAAAGTGTA
129 ATGTGAAAGTGTA
*
66390601 TATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATATATGTGATAAGGCCTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTA
*
66390666 ATGGCCGATGTGGTGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
66 ATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
66390731 ATGTGAAAGTGTA
129 ATGTGAAAGTGTA
* *
66390744 TATATGTGATAAGGCCTAATGGCCAATGTGGTGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
* * * * *
66390809 TAATGGCCAATGTGGTGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGACCAATGTGATGA
64 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
66390874 ATGTGAAAGTGTA
129 ATGTGAAAGTGTA
* * * * * * *
66390887 TATATGTGATAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
66390947 TCCCGAAGGG
Statistics
Matches: 1289, Mismatches: 38, Indels: 30
0.95 0.03 0.02
Matches are distributed among these distances:
140 47 0.04
141 334 0.26
142 92 0.07
143 770 0.60
145 46 0.04
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (141 bp):
TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTA
ATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
GTGAAAGTGTA
Found at i:66389843 original size:190 final size:190
Alignment explanation
Indices: 66389464--66390946 Score: 2652
Period size: 190 Copynumber: 7.8 Consensus size: 190
66389454 TACATGATAG
66389464 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTA
* *
66389529 ATAGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGGTGA
66 ATGGCCGATGTGGTGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGGTGA
66389592 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
131 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
66389652 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTA
*
66389717 ATGGCCGATGTGGTGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGGTGA
66 ATGGCCGATGTGGTGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGGTGA
66389782 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
131 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
*
66389842 TATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTA
66389907 ATGGCCGATGTGGTGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGGTGA
66 ATGGCCGATGTGGTGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGGTGA
66389972 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT-TA
131 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
66390031 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTA
*
66390096 ATGGCCGATGTGGTGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
66 ATGGCCGATGTGGTGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGGTGA
*
66390161 ATGTGAAAGTGTATATATGTGATAAGGCCAAATGGCCGATGTGATGAATGTGAAAGTGTA
131 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
66390221 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTA
* *
66390286 ATGGCCGATGTGGTGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGACCAATGTGGTGA
66 ATGGCCGATGTGGTGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGGTGA
66390351 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
131 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
*
66390411 TATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTA
* *
66390476 ATGGCTGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGGTGA
66 ATGGCCGATGTGGTGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGGTGA
66390541 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
131 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
*
66390601 TATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATATATGTGATAAGGCCTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTA
*
66390666 ATGGCCGATGTGGTGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
66 ATGGCCGATGTGGTGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGGTGA
* *
66390731 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGGTGAATGTGAAAGTGTATA
131 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TA
* * *
66390793 TATATGTGATAAGGCCTAATGGCCAATGTGGTGAATGTGAAAGTGTATATATGTGATAAGGCCGA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTA
* * * * * * * * * *
66390858 ATGACCAATGTGATGAATGTGAAAGTG--TATATATGTGATAGGGCCGAGTGGCCAACGTGATGG
66 ATGGCCGATGTGGTGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGGTGA
*
66390921 ATGTGAAAGTGTATAAATGTGATAAG
131 ATGTGAAAGTGTATATATGTGATAAG
66390947 TCCCGAAGGG
Statistics
Matches: 1254, Mismatches: 36, Indels: 8
0.97 0.03 0.01
Matches are distributed among these distances:
188 90 0.07
189 186 0.15
190 889 0.71
192 89 0.07
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (190 bp):
TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTA
ATGGCCGATGTGGTGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGGTGA
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
Found at i:66393913 original size:32 final size:32
Alignment explanation
Indices: 66393870--66393935 Score: 114
Period size: 32 Copynumber: 2.1 Consensus size: 32
66393860 AATGAAGAAG
66393870 ATGATAGCTAATTTGGCTTATTTACCTTTTTA
1 ATGATAGCTAATTTGGCTTATTTACCTTTTTA
* *
66393902 ATGATATCTAATTTGGCTTATTTCCCTTTTTA
1 ATGATAGCTAATTTGGCTTATTTACCTTTTTA
66393934 AT
1 AT
66393936 TCTTTTAATT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.24, C:0.14, G:0.11, T:0.52
Consensus pattern (32 bp):
ATGATAGCTAATTTGGCTTATTTACCTTTTTA
Found at i:66397979 original size:45 final size:45
Alignment explanation
Indices: 66397909--66397999 Score: 137
Period size: 45 Copynumber: 2.0 Consensus size: 45
66397899 CCTGAACATG
* * *
66397909 TGTCACATACATCATGAACTTAGACCACAACTGAATGAGCTCAGA
1 TGTCACATACATCATAAACTCAGACCACAACTCAATGAGCTCAGA
* *
66397954 TGTCACATATATCATAAACTCAGACCACAACTCAATGAGTTCAGA
1 TGTCACATACATCATAAACTCAGACCACAACTCAATGAGCTCAGA
66397999 T
1 T
66398000 CACATAATTC
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.38, C:0.24, G:0.13, T:0.24
Consensus pattern (45 bp):
TGTCACATACATCATAAACTCAGACCACAACTCAATGAGCTCAGA
Found at i:66406888 original size:22 final size:22
Alignment explanation
Indices: 66406845--66406888 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
66406835 TCATGGCTAG
* *
66406845 ATTTACAAGCCAAAACATATAT
1 ATTTACAAGACAAAACAAATAT
**
66406867 ATTTACAAGACATTACAAATAT
1 ATTTACAAGACAAAACAAATAT
66406889 CCAAGATCAT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.50, C:0.16, G:0.05, T:0.30
Consensus pattern (22 bp):
ATTTACAAGACAAAACAAATAT
Done.