Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 207 of 349
Found at i:66704671 original size:27 final size:27
Alignment explanation
Indices: 66704640--66704817 Score: 214
Period size: 27 Copynumber: 6.6 Consensus size: 27
66704630 TATATGAGTC
* * * *
66704640 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
*
66704667 CGCACACTTAGTGCTACATAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
66704694 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
66704722 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
66704749 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
66704776 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
66704803 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
66704818 GTACAATTTA
Statistics
Matches: 132, Mismatches: 16, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
27 108 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:66704779 original size:82 final size:81
Alignment explanation
Indices: 66704661--66704816 Score: 242
Period size: 82 Copynumber: 1.9 Consensus size: 81
66704651 TGCTATATAA
*
66704661 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
66704726 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
66704743 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
66704807 CACTTAGTGC
65 CACTTAGTGC
66704817 TGTACAATTT
Statistics
Matches: 68, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
81 16 0.24
82 52 0.76
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:66707617 original size:48 final size:47
Alignment explanation
Indices: 66707549--66707724 Score: 216
Period size: 48 Copynumber: 3.8 Consensus size: 47
66707539 TGTCCAGGTT
* *
66707549 TGAGAGCTAGTGTAAGACCATGTATGGGACATGGCATCGGCATTGAGA
1 TGAGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGG-ATTGAGA
*
66707597 TGAGTGCTAGTGTAAAACCATGTCTGGGACATGGCATCGGTATTGAGA
1 TGAGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGG-ATTGAGA
* * * * *
66707645 CGAGTACTAGTGTAAGA-CATGTCTGCGACAT-GCATTGGATACGAGA
1 TGAGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGAT-TGAGA
*
66707691 T-A-TGCCAGTGTAAGACCATGTCTGGGACATGGCA
1 TGAGTGCTAGTGTAAGACCATGTCTGGGACATGGCA
66707725 ACAGCACAGA
Statistics
Matches: 111, Mismatches: 14, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
44 11 0.10
45 16 0.14
46 13 0.12
47 13 0.12
48 58 0.52
ACGTcount: A:0.28, C:0.16, G:0.31, T:0.24
Consensus pattern (47 bp):
TGAGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGATTGAGA
Found at i:66709934 original size:39 final size:40
Alignment explanation
Indices: 66709889--66710060 Score: 222
Period size: 40 Copynumber: 4.3 Consensus size: 40
66709879 GCTCCTCGTT
* * *
66709889 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
*
66709929 C-AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * *
66709968 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * * *
66710008 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGG-ATTTAGTAACTCGCA
66710048 CAAATGCCTTCGG
1 CAAATGCCTTCGG
66710061 ATCTTAGTCC
Statistics
Matches: 119, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
39 35 0.29
40 80 0.67
41 4 0.03
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:66709989 original size:40 final size:39
Alignment explanation
Indices: 66709891--66710113 Score: 216
Period size: 40 Copynumber: 5.6 Consensus size: 39
66709881 TCCTCGTTCA
* * * *
66709891 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* *
66709930 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
66709969 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* * *
66710009 AAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCAC
** * * * *
66710049 AAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCAC
* *
66710090 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
66710114 CAGCATTCAA
Statistics
Matches: 157, Mismatches: 21, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
39 40 0.25
40 105 0.67
41 12 0.08
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
Found at i:66710073 original size:80 final size:79
Alignment explanation
Indices: 66709889--66710113 Score: 240
Period size: 80 Copynumber: 2.8 Consensus size: 79
66709879 GCTCCTCGTT
* * * * *
66709889 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGG-
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGT-ACTCGCACAAAGCCTTCGGGACTTAACCCGGA
66709953 ATTTAATAACTCGCA
65 ATTTAATAACTCGCA
* * *
66709968 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGGGCTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTA-CTCGCACAAA-GCCTTCGGGACTTAACCCGG
* *
66710033 AATTT-GTATCTCGCA
64 AATTTAATAACTCGCA
* * * * *
66710048 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGT-AC-TCGCACAAAGCCTTCGGGACTTAACCCG
66710112 GA
63 GA
66710114 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 18, Indels: 11
0.81 0.12 0.07
Matches are distributed among these distances:
78 1 0.01
79 39 0.32
80 69 0.57
81 13 0.11
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTACTCGCACAAAGCCTTCGGGACTTAACCCGGAA
TTTAATAACTCGCA
Found at i:66710122 original size:41 final size:41
Alignment explanation
Indices: 66710045--66710122 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
66710035 TTTGTATCTC
* * *
66710045 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
66710086 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
66710123 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:66717108 original size:9 final size:10
Alignment explanation
Indices: 66717085--66717111 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
66717075 AAGATAAAAA
66717085 AAAAATCTAT
1 AAAAATCTAT
66717095 AAAAATCTAT
1 AAAAATCTAT
66717105 AAAAATC
1 AAAAATC
66717112 AAAGAAAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.63, C:0.11, G:0.00, T:0.26
Consensus pattern (10 bp):
AAAAATCTAT
Found at i:66722189 original size:46 final size:46
Alignment explanation
Indices: 66722091--66722200 Score: 145
Period size: 43 Copynumber: 2.5 Consensus size: 46
66722081 CAGCCTTCGG
* * *
66722091 GATATTATTATGGGATATTATCTTTTAACAATTTAATTCTTACTGA
1 GATATTATTATGGGATATTATCTCTTAACAATTTAATTCCTAATGA
* * *
66722137 GATATTA-TA--AGATATTATCTCTTAGCAATTTGATTCCTAATGA
1 GATATTATTATGGGATATTATCTCTTAACAATTTAATTCCTAATGA
66722180 GATATTATTATGGGATATTAT
1 GATATTATTATGGGATATTAT
66722201 TATGATATAT
Statistics
Matches: 54, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
43 35 0.65
44 2 0.04
45 2 0.04
46 15 0.28
ACGTcount: A:0.34, C:0.08, G:0.13, T:0.45
Consensus pattern (46 bp):
GATATTATTATGGGATATTATCTCTTAACAATTTAATTCCTAATGA
Found at i:66722210 original size:13 final size:13
Alignment explanation
Indices: 66722176--66722213 Score: 58
Period size: 13 Copynumber: 2.9 Consensus size: 13
66722166 TTGATTCCTA
66722176 ATGAGATATTATT
1 ATGAGATATTATT
*
66722189 ATGGGATATTATT
1 ATGAGATATTATT
*
66722202 ATGATATATTAT
1 ATGAGATATTAT
66722214 CTTTTAGTAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.37, C:0.00, G:0.16, T:0.47
Consensus pattern (13 bp):
ATGAGATATTATT
Found at i:66723814 original size:85 final size:85
Alignment explanation
Indices: 66723710--66723888 Score: 340
Period size: 85 Copynumber: 2.1 Consensus size: 85
66723700 GGCCGGCCAT
*
66723710 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTTGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
66723775 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
66723795 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
66723860 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
*
66723880 GGGCATGGG
1 GAGCATGGG
66723889 CAATAAAATA
Statistics
Matches: 92, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
85 92 1.00
ACGTcount: A:0.37, C:0.08, G:0.27, T:0.27
Consensus pattern (85 bp):
GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
GTAAGGATTAATAAAATAAA
Found at i:66723838 original size:44 final size:44
Alignment explanation
Indices: 66723710--66723838 Score: 101
Period size: 39 Copynumber: 3.0 Consensus size: 44
66723700 GGCCGGCCAT
66723710 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAA
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAA
* ** ** * * *
66723754 CATGTTTGGGTAGTG-CATTATG-TAAGGATTAATAA-A----ATAAA
1 GA-GCATGGGT-G-GACAAGATGTTATGG-CTAAAAACATGTCATAAA
66723795 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAA
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAA
66723839 CATGTTGGGG
Statistics
Matches: 58, Mismatches: 16, Indels: 22
0.60 0.17 0.23
Matches are distributed among these distances:
38 1 0.02
39 11 0.19
40 11 0.19
41 6 0.10
44 6 0.10
45 11 0.19
46 11 0.19
47 1 0.02
ACGTcount: A:0.39, C:0.09, G:0.26, T:0.26
Consensus pattern (44 bp):
GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAA
Found at i:66725207 original size:47 final size:47
Alignment explanation
Indices: 66725153--66725890 Score: 1049
Period size: 47 Copynumber: 15.6 Consensus size: 47
66725143 TATTTGAATA
*
66725153 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
66725200 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
66725249 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
66725296 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
66725343 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
66725392 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
*
66725439 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
66725486 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
66725535 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
*
66725582 AATGTGAACA-TGCATATATGAT-ATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATG-TGATAAGGCCGAATGGCCAATGTGATG
* *
66725629 AATGTGAACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
66725676 AATGTGAACA-TGTGTATGTGTGATAAGGTCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
66725723 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
66725770 GATGTGAACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
66725817 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
66725864 GATGTGGAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
66725891 TCCCGAAGGG
Statistics
Matches: 653, Mismatches: 28, Indels: 20
0.93 0.04 0.03
Matches are distributed among these distances:
46 1 0.00
47 513 0.79
48 1 0.00
49 137 0.21
50 1 0.00
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.28
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:66725411 original size:143 final size:143
Alignment explanation
Indices: 66725153--66725890 Score: 1084
Period size: 143 Copynumber: 5.2 Consensus size: 143
66725143 TATTTGAATA
66725153 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATA
* * *
66725218 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
66 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAAT
* *
66725283 AGCCGATGTGATG
131 GGCCAATGTGATG
*
66725296 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATA
* * *
66725361 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
66 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAAT
*
66725426 GGCCGATGTGATG
131 GGCCAATGTGATG
66725439 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATA
* *
66725504 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TGTGTATGTGTGATAAGGCCGAA
66 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCGAA
66725568 TGGCCAATGTGATG
130 TGGCCAATGTGATG
* * *
66725582 AATGTGAACA-TGCATATATGAT-ATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TG--C
1 AATGTGAA-AGTGTATATATG-TGATAAGGCCTAATGGCCAATGTGATGAATGTGAA-AGTGTAT
* * * *
66725642 ATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TGTGTATGTGTGATAAGGTC
63 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCC
66725706 GAATGGCCAATGTGATG
127 GAATGGCCAATGTGATG
* * * * *
66725723 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAACA-TG--CA
1 AATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAA-AGTGTATA
*
66725784 TATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGA
64 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGA
66725849 ATGGCCAATGTGATG
129 ATGGCCAATGTGATG
* * *
66725864 GATGTGGAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
66725891 TCCCGAAGGG
Statistics
Matches: 562, Mismatches: 26, Indels: 16
0.93 0.04 0.03
Matches are distributed among these distances:
140 3 0.01
141 229 0.41
143 326 0.58
144 4 0.01
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.28
Consensus pattern (143 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATA
TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAAT
GGCCAATGTGATG
Found at i:66729616 original size:46 final size:46
Alignment explanation
Indices: 66729512--66729617 Score: 149
Period size: 46 Copynumber: 2.3 Consensus size: 46
66729502 CAAGGCTTAA
*
66729512 TATTCATGTATTCTCAAGTTTGAAACATATACAGGAGCTCAAAACC
1 TATTCATGTATTCTCAAGTCTGAAACATATACAGGAGCTCAAAACC
* * * * **
66729558 TAATCCTTTATTCTCAAGTCTGCAACATATACAGGAGCTCGGAACC
1 TATTCATGTATTCTCAAGTCTGAAACATATACAGGAGCTCAAAACC
66729604 TATTCATGTATTCT
1 TATTCATGTATTCT
66729618 TGTGTTCGCA
Statistics
Matches: 50, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
46 50 1.00
ACGTcount: A:0.32, C:0.22, G:0.13, T:0.33
Consensus pattern (46 bp):
TATTCATGTATTCTCAAGTCTGAAACATATACAGGAGCTCAAAACC
Found at i:66729629 original size:46 final size:46
Alignment explanation
Indices: 66729512--66729631 Score: 134
Period size: 46 Copynumber: 2.6 Consensus size: 46
66729502 CAAGGCTTAA
* *
66729512 TATTCATGTATTCTCAAGTTTGAAACATATACAGGAGCTCAAAACC
1 TATTCATGTATTCTCAAGTTCGCAACATATACAGGAGCTCAAAACC
* * * **
66729558 TAATCCTTTATTCTCAAG-TCTGCAACATATACAGGAGCTCGGAACC
1 TATTCATGTATTCTCAAGTTC-GCAACATATACAGGAGCTCAAAACC
***
66729604 TATTCATGTATTCTTGTGTTCGCAACAT
1 TATTCATGTATTCTCAAGTTCGCAACAT
66729632 GTAACAGCCT
Statistics
Matches: 59, Mismatches: 13, Indels: 4
0.78 0.17 0.05
Matches are distributed among these distances:
45 1 0.02
46 56 0.95
47 2 0.03
ACGTcount: A:0.31, C:0.22, G:0.14, T:0.33
Consensus pattern (46 bp):
TATTCATGTATTCTCAAGTTCGCAACATATACAGGAGCTCAAAACC
Found at i:66731421 original size:28 final size:27
Alignment explanation
Indices: 66731377--66731475 Score: 101
Period size: 28 Copynumber: 3.5 Consensus size: 27
66731367 TTAAGTGTTA
* *
66731377 AATGTGTCTT-GTTTTAATATATGTTTT
1 AATGTGTCTTAG-CTTAATACATGTTTT
66731404 AAATGTGTCTTAGCTTAAATACATGTTATT
1 -AATGTGTCTTAGCTT-AATACATGTT-TT
* *
66731434 AATATGTCTTAGCTTAAAACATGCTTTT
1 AATGTGTCTTAGCTTAATACATG-TTTT
*
66731462 AATGTGTCCTAGCT
1 AATGTGTCTTAGCT
66731476 GCTACTGAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 8
0.81 0.08 0.11
Matches are distributed among these distances:
28 33 0.54
29 26 0.43
30 2 0.03
ACGTcount: A:0.28, C:0.11, G:0.14, T:0.46
Consensus pattern (27 bp):
AATGTGTCTTAGCTTAATACATGTTTT
Found at i:66731441 original size:29 final size:28
Alignment explanation
Indices: 66731377--66731475 Score: 112
Period size: 29 Copynumber: 3.5 Consensus size: 28
66731367 TTAAGTGTTA
* * *
66731377 AATGTGTCTT-GTTTTAATATATGTTTT
1 AATGTGTCTTAGCTTAAATACATGTTTT
66731404 AAATGTGTCTTAGCTTAAATACATGTTATT
1 -AATGTGTCTTAGCTTAAATACATGTT-TT
*
66731434 AATATGTCTTAGCTTAAA-ACATGCTTTT
1 AATGTGTCTTAGCTTAAATACATG-TTTT
*
66731462 AATGTGTCCTAGCT
1 AATGTGTCTTAGCT
66731476 GCTACTGAAT
Statistics
Matches: 62, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
28 29 0.47
29 31 0.50
30 2 0.03
ACGTcount: A:0.28, C:0.11, G:0.14, T:0.46
Consensus pattern (28 bp):
AATGTGTCTTAGCTTAAATACATGTTTT
Found at i:66742494 original size:46 final size:46
Alignment explanation
Indices: 66742428--66742552 Score: 175
Period size: 46 Copynumber: 2.7 Consensus size: 46
66742418 TTTGTGTGCC
*
66742428 AGTGTAAGACATGTCTGGGACATGCATCGGCACATT-A-TGAGAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGC-CATTGAGCGAGAGCT
66742473 AGTGTAAGACCATGTCTGGGACATGGCATCGG-CATTGAGGCGAGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCATTGA-GCGAGAGCT
*
66742521 AGTGTAAGACATGTCTGAGACATGCATCGGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCC
66742553 TCGTGATGTA
Statistics
Matches: 72, Mismatches: 2, Indels: 10
0.86 0.02 0.12
Matches are distributed among these distances:
45 13 0.18
46 22 0.31
47 21 0.29
48 16 0.22
ACGTcount: A:0.27, C:0.19, G:0.31, T:0.22
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCATTGAGCGAGAGCT
Found at i:66742571 original size:46 final size:45
Alignment explanation
Indices: 66742425--66742590 Score: 169
Period size: 46 Copynumber: 3.6 Consensus size: 45
66742415 TCATTTGTGT
66742425 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCACAT-T-ATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGC-C-TCTGATGAGA
* * *
66742470 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCAT-TGAGGCGAGA
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCTGA--TGAGA
* *
66742518 GCTAGTGTAAGACATGTCTGAGACATGCATCGGCCTCGTGATGTA-A
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTC-TGATG-AGA
* *
66742564 GCCAGTGTATGACATGTCTTGGACATG
1 GCCAGTGTAAGACATGTCTGGGACATG
66742591 TCAGTGTAAG
Statistics
Matches: 103, Mismatches: 10, Indels: 15
0.80 0.08 0.12
Matches are distributed among these distances:
45 13 0.13
46 49 0.48
47 22 0.21
48 19 0.18
ACGTcount: A:0.26, C:0.19, G:0.31, T:0.24
Consensus pattern (45 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCTGATGAGA
Found at i:66742617 original size:27 final size:26
Alignment explanation
Indices: 66742566--66742617 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
66742556 TGATGTAAGC
* * *
66742566 CAGTGTATGACATGTCTTGGACATGT
1 CAGTGTAAGACATATCTGGGACATGT
66742592 CAGTGTAAGACCATATCTGGGACATG
1 CAGTGTAAGA-CATATCTGGGACATG
66742618 GCATCGGCAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 9 0.41
27 13 0.59
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (26 bp):
CAGTGTAAGACATATCTGGGACATGT
Found at i:66748585 original size:43 final size:42
Alignment explanation
Indices: 66748529--66748627 Score: 117
Period size: 43 Copynumber: 2.3 Consensus size: 42
66748519 TAGGATATTT
* **
66748529 TTATAGGATATTATATTTTAGTAATTTAAGCCCTAATGGGATA
1 TTATAGGATATTATATCTTAACAATTTAAGCCCTAAT-GGATA
* * * **
66748572 TTATAAGATATTATCTCTTAACAATTTGATTCCTAATGGATA
1 TTATAGGATATTATATCTTAACAATTTAAGCCCTAATGGATA
66748614 TTATAGGATATTAT
1 TTATAGGATATTAT
66748628 TATGGGATAT
Statistics
Matches: 47, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
42 18 0.38
43 29 0.62
ACGTcount: A:0.35, C:0.08, G:0.13, T:0.43
Consensus pattern (42 bp):
TTATAGGATATTATATCTTAACAATTTAAGCCCTAATGGATA
Found at i:66749023 original size:20 final size:20
Alignment explanation
Indices: 66748987--66749036 Score: 59
Period size: 20 Copynumber: 2.6 Consensus size: 20
66748977 ATCAAAACTT
*
66748987 TACTTTAA-TATAATATTTA
1 TACTTTAATTATAATATTCA
* *
66749006 TAGTTTAATTATATTATTCA
1 TACTTTAATTATAATATTCA
66749026 TACTTT-ATTAT
1 TACTTTAATTAT
66749037 CTTCAATTGT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
19 12 0.46
20 14 0.54
ACGTcount: A:0.36, C:0.06, G:0.02, T:0.56
Consensus pattern (20 bp):
TACTTTAATTATAATATTCA
Found at i:66750472 original size:22 final size:22
Alignment explanation
Indices: 66750447--66750525 Score: 113
Period size: 22 Copynumber: 3.6 Consensus size: 22
66750437 AAACAGGGTC
* * *
66750447 ACACGCCCCTGTGGGCATAGGG
1 ACACGCCCGTGTGGACATAAGG
66750469 ACACGCCCGTGTGGACATAAGG
1 ACACGCCCGTGTGGACATAAGG
66750491 ACACGCCCGTGTGGACATAAGG
1 ACACGCCCGTGTGGACATAAGG
* *
66750513 ACACACCCATGTG
1 ACACGCCCGTGTG
66750526 CCTTTGGCAA
Statistics
Matches: 52, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 52 1.00
ACGTcount: A:0.25, C:0.30, G:0.30, T:0.14
Consensus pattern (22 bp):
ACACGCCCGTGTGGACATAAGG
Found at i:66752440 original size:50 final size:50
Alignment explanation
Indices: 66752366--66752600 Score: 218
Period size: 50 Copynumber: 4.9 Consensus size: 50
66752356 ACATATTGAT
* * * * *
66752366 GCCGATGTCATATCCGAGATATGGTCTTACACTGGCTCTCATATATCAAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATATCAAG
* * * * **
66752416 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTTCATCTGT-TGG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATATCAAG
* * *
66752465 TGCCGATGCCATGTTCCAGACATGGTCTTACACT-G---ACACATATCAA-
1 -GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATATCAAG
* * * *
66752511 GCCGATGCCTTGTCCCAGACATGGTCTTACATTAGCTTTCATATCTC-AG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATATCAAG
* *
66752560 GCCGATG-CATGTCCTAGACAT-GTCTTACAGTAGCTCTCATA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATA
66752601 ACAGTAGTGT
Statistics
Matches: 152, Mismatches: 26, Indels: 17
0.78 0.13 0.09
Matches are distributed among these distances:
45 30 0.20
46 5 0.03
47 18 0.12
48 13 0.09
49 15 0.10
50 71 0.47
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.30
Consensus pattern (50 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATATCAAG
Found at i:66758048 original size:42 final size:42
Alignment explanation
Indices: 66757989--66758073 Score: 161
Period size: 42 Copynumber: 2.0 Consensus size: 42
66757979 AAGACCATAA
*
66757989 AGACAAACAATTCGGTAAATTCCTTAAACTCCTTAAAAAATT
1 AGACAAACAATTCGGTAAATTCCTTAAACTCATTAAAAAATT
66758031 AGACAAACAATTCGGTAAATTCCTTAAACTCATTAAAAAATT
1 AGACAAACAATTCGGTAAATTCCTTAAACTCATTAAAAAATT
66758073 A
1 A
66758074 CATATTAACT
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.47, C:0.18, G:0.07, T:0.28
Consensus pattern (42 bp):
AGACAAACAATTCGGTAAATTCCTTAAACTCATTAAAAAATT
Found at i:66759978 original size:10 final size:10
Alignment explanation
Indices: 66759957--66759994 Score: 51
Period size: 10 Copynumber: 3.8 Consensus size: 10
66759947 CTTCCCCCAC
66759957 CCCTTT-TTT
1 CCCTTTCTTT
66759966 CCCTTTCTTT
1 CCCTTTCTTT
*
66759976 CCCTTTCCTT
1 CCCTTTCTTT
66759986 CCCTCTTCT
1 CCCT-TTCT
66759995 CCCTCTACCC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
9 6 0.24
10 16 0.64
11 3 0.12
ACGTcount: A:0.00, C:0.45, G:0.00, T:0.55
Consensus pattern (10 bp):
CCCTTTCTTT
Found at i:66760510 original size:3 final size:3
Alignment explanation
Indices: 66760502--66760549 Score: 87
Period size: 3 Copynumber: 16.0 Consensus size: 3
66760492 TCTTCATTCA
*
66760502 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ACT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
66760550 TTCTATTTAT
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 43 1.00
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:66761849 original size:6 final size:6
Alignment explanation
Indices: 66761834--66761889 Score: 94
Period size: 6 Copynumber: 9.3 Consensus size: 6
66761824 ATTGAGTCCA
* *
66761834 TTTATC TTTATG TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT
1 TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT
66761882 TTTATT TT
1 TTTATT TT
66761890 GTTTTCCTGT
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 48 1.00
ACGTcount: A:0.16, C:0.02, G:0.02, T:0.80
Consensus pattern (6 bp):
TTTATT
Found at i:66769347 original size:30 final size:30
Alignment explanation
Indices: 66769313--66769373 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
66769303 TCCTTAACTC
66769313 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
66769343 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
66769373 A
1 A
66769374 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:66771720 original size:22 final size:22
Alignment explanation
Indices: 66771692--66771750 Score: 59
Period size: 22 Copynumber: 2.6 Consensus size: 22
66771682 TAATGTAAAA
*
66771692 TTTAAATTTAAATTTAAATT-TT
1 TTTAAATTT-AATATAAATTATT
66771714 TTTAAATAATTAATATAAATTATT
1 TTTAAAT--TTAATATAAATTATT
66771738 TGTTAAA-TTAATA
1 T-TTAAATTTAATA
66771751 ATAATAAAAA
Statistics
Matches: 32, Mismatches: 1, Indels: 8
0.78 0.02 0.20
Matches are distributed among these distances:
22 13 0.41
23 9 0.28
24 5 0.16
25 5 0.16
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.53
Consensus pattern (22 bp):
TTTAAATTTAATATAAATTATT
Found at i:66771749 original size:26 final size:23
Alignment explanation
Indices: 66771706--66771758 Score: 63
Period size: 25 Copynumber: 2.2 Consensus size: 23
66771696 AATTTAAATT
66771706 TAAATTTTTTTAAATAATTAAT-A
1 TAAATTTTTTTAAATAA-TAATAA
66771729 TAAATTATTTGTTAAATTAATAATAA
1 TAAATT-TTT-TTAAA-TAATAATAA
66771755 TAAA
1 TAAA
66771759 AAAGTTAAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
23 6 0.23
24 3 0.12
25 9 0.35
26 8 0.31
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (23 bp):
TAAATTTTTTTAAATAATAATAA
Found at i:66776634 original size:41 final size:41
Alignment explanation
Indices: 66776577--66776659 Score: 157
Period size: 41 Copynumber: 2.0 Consensus size: 41
66776567 CAGCTAGATG
*
66776577 TGAAGAATGCTTTCCTAAATGGGAAACTTGAAGAAGAAGTT
1 TGAAGAATGCTTTCCTAAATGGGAAACTTGAAGAAAAAGTT
66776618 TGAAGAATGCTTTCCTAAATGGGAAACTTGAAGAAAAAGTT
1 TGAAGAATGCTTTCCTAAATGGGAAACTTGAAGAAAAAGTT
66776659 T
1 T
66776660 ACATGTATCC
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.40, C:0.10, G:0.23, T:0.28
Consensus pattern (41 bp):
TGAAGAATGCTTTCCTAAATGGGAAACTTGAAGAAAAAGTT
Found at i:66777873 original size:19 final size:18
Alignment explanation
Indices: 66777844--66777893 Score: 73
Period size: 19 Copynumber: 2.7 Consensus size: 18
66777834 GTATATATTT
*
66777844 TAAATTTATTTAGGTAGA
1 TAAATTTATTTAGGAAGA
66777862 TAAATCTTATTTAGGAAGA
1 TAAAT-TTATTTAGGAAGA
66777881 TAAATTTTATTTA
1 TAAA-TTTATTTA
66777894 TAATCTAGGA
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
18 5 0.17
19 23 0.79
20 1 0.03
ACGTcount: A:0.40, C:0.02, G:0.12, T:0.46
Consensus pattern (18 bp):
TAAATTTATTTAGGAAGA
Found at i:66786320 original size:131 final size:132
Alignment explanation
Indices: 66786078--66786433 Score: 455
Period size: 131 Copynumber: 2.7 Consensus size: 132
66786068 TCATTCATTC
* * *
66786078 AAAAATTCTTCAAAACGAAGACGAGATTCGATGTTTGGTAATTCGCGGAATTGTGCCCTAACGTG
1 AAAAATTCTTCAAAACGAAGACGAGATTCGATATTTGGCAATTCGCGGAATCGTGCCCTAACGTG
* * *
66786143 TTGGGTTGCAATTTCGCGTTTGCTCGAAATAATCGAATATCACTTCAAAATTTCACTCATGTCT-
66 TTGGGTTGCAATTTCACGTTTGCTCAAAATAATCGAATATCACTTCAAAATTTCACTCATATCTC
*
66786207 TT
131 CT
* *
66786209 TAAAATTCTTCAAAACGAAGACGAGATTCGATATTTAGCAATTCGCGGAATCGTGCCCTAACGTG
1 AAAAATTCTTCAAAACGAAGACGAGATTCGATATTTGGCAATTCGCGGAATCGTGCCCTAACGTG
* * * *
66786274 TTGGGTTGCAATTTCACGTTTGCTTAAAATAATCGAGTATCCCTTCAAAATTTCATTCATATCTC
66 TTGGGTTGCAATTTCACGTTTGCTCAAAATAATCGAATATCACTTCAAAATTTCACTCATATCTC
66786339 CT
131 CT
* * * * * ** * * *
66786341 AAAAATTATTTAAAACGAAGGCAAGATTTGGCATTTGGCAATTCG-AGAATCATGCCCTATCGTG
1 AAAAATTCTTCAAAACGAAGACGAGATTCGATATTTGGCAATTCGCGGAATCGTGCCCTAACGTG
* ** *
66786405 CTGGGTTGTGATTTCCCGTTTGCTCAAAA
66 TTGGGTTGCAATTTCACGTTTGCTCAAAA
66786434 CGATCGAACA
Statistics
Matches: 194, Mismatches: 30, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
131 157 0.81
132 37 0.19
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.33
Consensus pattern (132 bp):
AAAAATTCTTCAAAACGAAGACGAGATTCGATATTTGGCAATTCGCGGAATCGTGCCCTAACGTG
TTGGGTTGCAATTTCACGTTTGCTCAAAATAATCGAATATCACTTCAAAATTTCACTCATATCTC
CT
Found at i:66786594 original size:133 final size:130
Alignment explanation
Indices: 66786374--66786704 Score: 285
Period size: 130 Copynumber: 2.5 Consensus size: 130
66786364 AGATTTGGCA
* * ** * * *
66786374 TTTGGC-AATTCGAGAATCATGCCCTATCGTGCTGGGTTGTGATTTCCCGTTTGCTCAAAACGAT
1 TTTGGCAAATT-GAGAATCGTGCCCTATCGTGCTGGGTTGTGCTTTTTCATTAGCTCAAAACAAT
* * **
66786438 CGAACATTCCTTTATATTCTCACTCATGTTTATAAAAAAAATAC-TTAAAAACGAAGACGATGTT
65 CGAACATCCCTTGATATTCTCACTCACATTT-T--AAAAAAT-CTTTAAAAACGAAGACGATGTT
66786502 CAATG
126 CAATG
** * * * *
66786507 TTTGGTGATTTGAGAATCGTGCCCTATCGTGCTGGGTTGTGCTTTTTCATTAGTTCGAAACAATT
1 TTTGGCAAATTGAGAATCGTGCCCTATCGTGCTGGGTTGTGCTTTTTCATTAGCTCAAAACAATC
** * * ** *
66786572 GAACATCCCTTCGGA-ATT-TCACTCACATTTTCTAAAATCTTTCAAAATGAAGGTGATGTTCGA
66 GAACATCCCTT--GATATTCTCACTCACATTTTAAAAAATCTTTAAAAACGAAGACGATGTTCAA
66786635 TG
129 TG
** * * * *
66786637 TTTGGCAAATTGAGAATCGAACCCTATCGTGTTGGGTTGCGCTTTTTCATTTG-TCCAAAATAAT
1 TTTGGCAAATTGAGAATCGTGCCCTATCGTGCTGGGTTGTGCTTTTTCATTAGCT-CAAAACAAT
66786701 CGAA
65 CGAA
66786705 TATTTCCTCA
Statistics
Matches: 159, Mismatches: 34, Indels: 13
0.77 0.17 0.06
Matches are distributed among these distances:
129 2 0.01
130 80 0.50
132 1 0.01
133 69 0.43
134 6 0.04
135 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.19, T:0.35
Consensus pattern (130 bp):
TTTGGCAAATTGAGAATCGTGCCCTATCGTGCTGGGTTGTGCTTTTTCATTAGCTCAAAACAATC
GAACATCCCTTGATATTCTCACTCACATTTTAAAAAATCTTTAAAAACGAAGACGATGTTCAATG
Found at i:66787190 original size:10 final size:9
Alignment explanation
Indices: 66787165--66787190 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
66787155 TTTCATTAAA
66787165 TTTAAAAAT
1 TTTAAAAAT
66787174 TTTAAAAAT
1 TTTAAAAAT
66787183 TTTAAAAA
1 TTTAAAAA
66787191 GGGTGGTTTC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (9 bp):
TTTAAAAAT
Found at i:66797892 original size:44 final size:44
Alignment explanation
Indices: 66797403--66797880 Score: 634
Period size: 44 Copynumber: 10.9 Consensus size: 44
66797393 GGCAAATCCT
* * *
66797403 GCAGATTTGGCATCTCTATATTGGCGGAGAGCAGATCGAAGATA
1 GCAGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATA
* * * *
66797447 GCAGATTTGGTGTCTCTGTATTGGCGGAGAGTAGATCGAAGGTA
1 GCAGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATA
* *
66797491 GCAGATTTGGCGTCTCTGTATTGTCAGAGGGCAGATCGAAGATA
1 GCAGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATA
* *
66797535 GCAGATTTGGCGTCTCTGTATTGTCAGAG-GACAGATCGAAGGTA
1 GCAGATTTGGCGTCTCTGTATTGGCAGAGAG-CAGATCGAAGATA
* * * *
66797579 GAAGATTTGGCGTCTCTGTATTGTCAAAGGGCAGATCGAAGATA
1 GCAGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATA
* * * *
66797623 ACAGATTTGGCATCTCTGTATCGGCAGAGAGCAGATCAAAGATA
1 GCAGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATA
* * *
66797667 GCAGATTTGGCATCTCTGTATTGGCGGAAAGCAGATCGAAGATA
1 GCAGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATA
* *
66797711 GCAGATTTGGTGTCTCTGTATTGTCAGAGAGCAGATCGAAGATA
1 GCAGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATA
* *
66797755 GCAGATTTGGTGTCTCTGTATTGGCGGAGAGCAGATCGAAGATA
1 GCAGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATA
* ** * *
66797799 GCAGATTTGGCATCTCTGTATTATCAGAGAGCGGATCGAACATA
1 GCAGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATA
* * *
66797843 GCAGATTTGGCATCTCAGTGTTGGCAGAGAGCAGATCG
1 GCAGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCG
66797881 GAAATAACAG
Statistics
Matches: 385, Mismatches: 47, Indels: 4
0.88 0.11 0.01
Matches are distributed among these distances:
43 1 0.00
44 383 0.99
45 1 0.00
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (44 bp):
GCAGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATA
Found at i:66800957 original size:131 final size:131
Alignment explanation
Indices: 66800712--66800966 Score: 357
Period size: 131 Copynumber: 1.9 Consensus size: 131
66800702 CATTCATTCA
* * *
66800712 AAAATTCTTCAAAACGAAGACGAGATTCGATGTTTGGCAATTCGCAGAATCGTGCCCTAACGTGT
1 AAAATTCTTCAAAACGAAGACGAGATTCAATATTTAGCAATTCGCAGAATCGTGCCCTAACGTGT
* * * *
66800777 TGGGTTGCAATTTCGCTTTTGCTCGAAATAGTTGAATATCACTTCAAAATTTCACTCATGTCTTT
66 TGGGTTGCAATTTCGCGTTTGCTCAAAATAATCGAATATCACTTCAAAATTTCACTCATGTCTTT
66800842 T
131 T
* * ** *
66800843 AAAATTCTTCAAAACGAAGACGAGATTCAATATTTAGCAATTTGCGGAATCGTGCTGTAATGTGT
1 AAAATTCTTCAAAACGAAGACGAGATTCAATATTTAGCAATTCGCAGAATCGTGCCCTAACGTGT
* * * * *
66800908 TGGGTTGCAATTTTGCGTTTGCTCAAAATAATCGAGTATCCCTTGAAAATTTCATTCAT
66 TGGGTTGCAATTTCGCGTTTGCTCAAAATAATCGAATATCACTTCAAAATTTCACTCAT
66800967 ATCTCCTAAA
Statistics
Matches: 107, Mismatches: 17, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
131 107 1.00
ACGTcount: A:0.30, C:0.17, G:0.18, T:0.35
Consensus pattern (131 bp):
AAAATTCTTCAAAACGAAGACGAGATTCAATATTTAGCAATTCGCAGAATCGTGCCCTAACGTGT
TGGGTTGCAATTTCGCGTTTGCTCAAAATAATCGAATATCACTTCAAAATTTCACTCATGTCTTT
T
Found at i:66803955 original size:17 final size:18
Alignment explanation
Indices: 66803918--66803955 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
66803908 GATTGAGAGT
* *
66803918 GAAAAGGAATGTGAAACA
1 GAAAAGAAATGTGAAAAA
66803936 GAAAAGAAAT-TGAAAAA
1 GAAAAGAAATGTGAAAAA
66803953 GAA
1 GAA
66803956 GTTGAAGAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 9 0.50
18 9 0.50
ACGTcount: A:0.63, C:0.03, G:0.24, T:0.11
Consensus pattern (18 bp):
GAAAAGAAATGTGAAAAA
Found at i:66803968 original size:13 final size:12
Alignment explanation
Indices: 66803937--66803991 Score: 51
Period size: 12 Copynumber: 4.6 Consensus size: 12
66803927 TGTGAAACAG
*
66803937 AAAAGAAATTGA
1 AAAAGAAGTTGA
66803949 AAAAGAAGTTGA
1 AAAAGAAGTTGA
*
66803961 AGAAAGAAG-AGA
1 A-AAAGAAGTTGA
*
66803973 AAATG-AGTTAGA
1 AAAAGAAGTT-GA
66803985 AAAAGAA
1 AAAAGAA
66803992 ACAAAAGAAA
Statistics
Matches: 34, Mismatches: 5, Indels: 7
0.74 0.11 0.15
Matches are distributed among these distances:
10 2 0.06
11 3 0.09
12 21 0.62
13 8 0.24
ACGTcount: A:0.64, C:0.00, G:0.24, T:0.13
Consensus pattern (12 bp):
AAAAGAAGTTGA
Found at i:66810448 original size:26 final size:27
Alignment explanation
Indices: 66810405--66810493 Score: 126
Period size: 27 Copynumber: 3.3 Consensus size: 27
66810395 TACTGAAATG
* * *
66810405 CCCTCGATTTATAGAATTACTGTTTTA
1 CCCTCGATTTACAAAATTACCGTTTTA
*
66810432 -CCTCGATTTACAAAATTACCATTTTA
1 CCCTCGATTTACAAAATTACCGTTTTA
*
66810458 CCCTCAATTTACAAAATTACCGTTTTA
1 CCCTCGATTTACAAAATTACCGTTTTA
66810485 CCCTCGATT
1 CCCTCGATT
66810494 GTGAAATTAT
Statistics
Matches: 54, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
26 22 0.41
27 32 0.59
ACGTcount: A:0.29, C:0.25, G:0.07, T:0.39
Consensus pattern (27 bp):
CCCTCGATTTACAAAATTACCGTTTTA
Found at i:66810555 original size:27 final size:27
Alignment explanation
Indices: 66810525--66810673 Score: 174
Period size: 27 Copynumber: 5.5 Consensus size: 27
66810515 TATAGGATAG
* *
66810525 AATTACCAAAATACCCCTAGTTTTTAA
1 AATTACCAAAATACCCCTAATTTGTAA
66810552 AATTACCAAAATACCCCTAATTTGTAA
1 AATTACCAAAATACCCCTAATTTGTAA
* * ** *
66810579 AATTACCGAAATACCACTGGTTTGTGA
1 AATTACCAAAATACCCCTAATTTGTAA
**
66810606 AATTACTGAAATA-CCCTCAATTTGTAA
1 AATTACCAAAATACCCCT-AATTTGTAA
* *
66810633 AATTACCAAAATACCCTTAATTTATAA
1 AATTACCAAAATACCCCTAATTTGTAA
*
66810660 AATTACAAAAATAC
1 AATTACCAAAATAC
66810674 ACTTGACTTT
Statistics
Matches: 103, Mismatches: 17, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
26 3 0.03
27 97 0.94
28 3 0.03
ACGTcount: A:0.44, C:0.19, G:0.06, T:0.31
Consensus pattern (27 bp):
AATTACCAAAATACCCCTAATTTGTAA
Found at i:66810566 original size:54 final size:53
Alignment explanation
Indices: 66810506--66810673 Score: 174
Period size: 54 Copynumber: 3.1 Consensus size: 53
66810496 GAAATTATTG
** * * *
66810506 AAATACCCCTATAGGATAGAATTACCAAAATACCCCTAGTTTTTAAAATTACCA
1 AAATACCCCTATTTG-TAAAATTACCAAAATACCCCTAGTTTATAAAATTACAA
* * * * * **
66810560 AAATACCCCTAATTTGTAAAATTACCGAAATACCACTGGTTTGTGAAATTACTG
1 AAATACCCCT-ATTTGTAAAATTACCAAAATACCCCTAGTTTATAAAATTACAA
* * *
66810614 AAATACCCTCAATTTGTAAAATTACCAAAATACCCTTAATTTATAAAATTACAA
1 AAATACCC-CTATTTGTAAAATTACCAAAATACCCCTAGTTTATAAAATTACAA
66810668 AAATAC
1 AAATAC
66810674 ACTTGACTTT
Statistics
Matches: 92, Mismatches: 20, Indels: 4
0.79 0.17 0.03
Matches are distributed among these distances:
54 88 0.96
55 4 0.04
ACGTcount: A:0.43, C:0.20, G:0.07, T:0.30
Consensus pattern (53 bp):
AAATACCCCTATTTGTAAAATTACCAAAATACCCCTAGTTTATAAAATTACAA
Found at i:66810729 original size:110 final size:108
Alignment explanation
Indices: 66810525--66810760 Score: 276
Period size: 110 Copynumber: 2.2 Consensus size: 108
66810515 TATAGGATAG
* * * * * * *
66810525 AATTACCAAAATACCCCTAGTTTTTAAAATTACCAAAATACCCCTAATTTGTAAAATTACCGAAA
1 AATTACCAAAATACCCTTAATTTATAAAATTACAAAAATACACCTAATTTCTAAAATTACAGAAA
*
66810590 TACCACTGGTTTGTGAAATTACTGAAATACCCTCAATTTGTAA
66 TACCACTGGTTTCTGAAATTACTGAAATACCCTCAATTTGTAA
* * *
66810633 AATTACCAAAATACCCTTAATTTATAAAATTACAAAAATACACTTGACTTTCTAAAAATTATAGA
1 AATTACCAAAATACCCTTAATTTATAAAATTACAAAAATACACCT-AATTTCT-AAAATTACAGA
* *** *
66810698 AATACCATTGGTTTACT-AAATTACTGAAATACCCTTGGTTTGTAG
64 AATACCACTGGTTT-CTGAAATTACTGAAATACCCTCAATTTGTAA
* *
66810743 ATTTACCAAAACACCCTT
1 AATTACCAAAATACCCTT
66810761 GTAGGATGAA
Statistics
Matches: 107, Mismatches: 18, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
108 39 0.36
109 5 0.05
110 62 0.58
111 1 0.01
ACGTcount: A:0.41, C:0.19, G:0.08, T:0.33
Consensus pattern (108 bp):
AATTACCAAAATACCCTTAATTTATAAAATTACAAAAATACACCTAATTTCTAAAATTACAGAAA
TACCACTGGTTTCTGAAATTACTGAAATACCCTCAATTTGTAA
Found at i:66810781 original size:110 final size:110
Alignment explanation
Indices: 66810577--66810783 Score: 238
Period size: 110 Copynumber: 1.9 Consensus size: 110
66810567 CCTAATTTGT
* *
66810577 AAAATTACCGAAATACCACTGGTTTGTGAAATTACTGAAATACCCTCAATTTGTAAAATTACCAA
1 AAAATTACAGAAATACCACTGGTTTCTGAAATTACTGAAATACCCTCAATTTGTAAAATTACCAA
* ** *
66810642 AATACCCTTAATTTATAAAATTACAAAAATACACTTGACTTTCTA
66 AACACCCTTAATGGATAAAATGACAAAAATACACTTGACTTTCTA
* * *** * *
66810687 AAAATTATAGAAATACCATTGGTTTACT-AAATTACTGAAATACCCTTGGTTTGTAGATTTACCA
1 AAAATTACAGAAATACCACTGGTTT-CTGAAATTACTGAAATACCCTCAATTTGTAAAATTACCA
* * *
66810751 AAACACCCTT-GTAGGATGAAATGACTAAAATAC
65 AAACACCCTTAAT-GGATAAAATGACAAAAATAC
66810784 CCCTAATAGG
Statistics
Matches: 79, Mismatches: 16, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
109 1 0.01
110 77 0.97
111 1 0.01
ACGTcount: A:0.42, C:0.17, G:0.10, T:0.31
Consensus pattern (110 bp):
AAAATTACAGAAATACCACTGGTTTCTGAAATTACTGAAATACCCTCAATTTGTAAAATTACCAA
AACACCCTTAATGGATAAAATGACAAAAATACACTTGACTTTCTA
Found at i:66810855 original size:27 final size:26
Alignment explanation
Indices: 66810792--66810855 Score: 67
Period size: 26 Copynumber: 2.4 Consensus size: 26
66810782 ACCCCTAATA
*
66810792 GGTAAAAAGACCGTAAAGCCCCGTAG
1 GGTAAAATGACCGTAAAGCCCCGTAG
* * *
66810818 GGTAAAGTGACCGTAATA-CCCTTGTAT
1 GGTAAAATGACCGTAA-AGCCC-CGTAG
66810845 GGTAAAATGAC
1 GGTAAAATGAC
66810856 GAATATGCCC
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
26 17 0.55
27 14 0.45
ACGTcount: A:0.36, C:0.19, G:0.25, T:0.20
Consensus pattern (26 bp):
GGTAAAATGACCGTAAAGCCCCGTAG
Found at i:66811992 original size:31 final size:31
Alignment explanation
Indices: 66811954--66812061 Score: 180
Period size: 31 Copynumber: 3.5 Consensus size: 31
66811944 CGTTTACAGT
* *
66811954 AAAGGCTTCAGCCCAGTGATATGATTTAAGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
66811985 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
* *
66812016 AAATGCTTCGGCCCAGTGATATGATTTATGG
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
66812047 AAAGGCTTCGGCCCA
1 AAAGGCTTCGGCCCA
66812062 ATATATGTCA
Statistics
Matches: 72, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 72 1.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.27
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:66814551 original size:20 final size:20
Alignment explanation
Indices: 66814526--66814566 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
66814516 ACCGTGTGGT
66814526 TACTCAGGCTCATTTTGAAA
1 TACTCAGGCTCATTTTGAAA
66814546 TACTCAGGCTCATTTTGAAA
1 TACTCAGGCTCATTTTGAAA
66814566 T
1 T
66814567 GACCCTCGAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.29, C:0.20, G:0.15, T:0.37
Consensus pattern (20 bp):
TACTCAGGCTCATTTTGAAA
Found at i:66816927 original size:28 final size:27
Alignment explanation
Indices: 66816863--66817014 Score: 232
Period size: 27 Copynumber: 5.6 Consensus size: 27
66816853 TTATTAAGTC
* *
66816863 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
66816890 CGCACACTTAGTGCTACATAATCATACT
1 CGCACACTTAGTGCTACATAATCA-ACT
*
66816918 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
66816945 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
* *
66816973 CGCACACTTAGTGCTACATATTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
66817000 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
66817015 GCACAATTTA
Statistics
Matches: 118, Mismatches: 5, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
27 66 0.56
28 52 0.44
ACGTcount: A:0.30, C:0.29, G:0.13, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:66816947 original size:55 final size:55
Alignment explanation
Indices: 66816863--66817039 Score: 246
Period size: 55 Copynumber: 3.2 Consensus size: 55
66816853 TTATTAAGTC
* * *
66816863 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCATACT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
* *
66816918 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
* * * * * *
66816973 CGCACACTTAGTGCTACATATTCAATTCGCACACTTAGTGCTGCACAATTTAAACC
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAA-TCAAACT
66817029 CGCACACTTAG
1 CGCACACTTAG
66817040 CGCCAATCTC
Statistics
Matches: 109, Mismatches: 12, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
55 93 0.85
56 16 0.15
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
Found at i:66825073 original size:28 final size:27
Alignment explanation
Indices: 66825009--66825160 Score: 232
Period size: 27 Copynumber: 5.6 Consensus size: 27
66824999 TTATTAAGTC
* *
66825009 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
66825036 CGCACACTTAGTGCTACATAATCATACT
1 CGCACACTTAGTGCTACATAATCA-ACT
*
66825064 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
66825091 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
* *
66825119 CGCACACTTAGTGCTACATATTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
66825146 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
66825161 GCACAATTTA
Statistics
Matches: 118, Mismatches: 5, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
27 66 0.56
28 52 0.44
ACGTcount: A:0.30, C:0.29, G:0.13, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:66825093 original size:55 final size:55
Alignment explanation
Indices: 66825009--66825185 Score: 246
Period size: 55 Copynumber: 3.2 Consensus size: 55
66824999 TTATTAAGTC
* * *
66825009 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCATACT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
* *
66825064 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
* * * * * *
66825119 CGCACACTTAGTGCTACATATTCAATTCGCACACTTAGTGCTGCACAATTTAAACC
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAA-TCAAACT
66825175 CGCACACTTAG
1 CGCACACTTAG
66825186 CGCCAATCTC
Statistics
Matches: 109, Mismatches: 12, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
55 93 0.85
56 16 0.15
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
Found at i:66827235 original size:43 final size:41
Alignment explanation
Indices: 66827177--66827279 Score: 125
Period size: 44 Copynumber: 2.4 Consensus size: 41
66827167 TCCTAAACAG
** * *
66827177 GGTCTTACAGGAAATCAAATACGATGCCGATGTCCCAGACAT
1 GGTCTTACACAAAATCAAAT-CGATGCCAACGTCCCAGACAT
*
66827219 GGTCTTACACATAAATCTCAAATCGATGCCAACGTCCCAGACGT
1 GGTCTTACACA-AAA--TCAAATCGATGCCAACGTCCCAGACAT
66827263 GGTCTTACACAAAATCA
1 GGTCTTACACAAAATCA
66827280 TATATCGAAA
Statistics
Matches: 53, Mismatches: 5, Indels: 7
0.82 0.08 0.11
Matches are distributed among these distances:
41 3 0.06
42 9 0.17
43 6 0.11
44 29 0.55
45 6 0.11
ACGTcount: A:0.34, C:0.26, G:0.17, T:0.22
Consensus pattern (41 bp):
GGTCTTACACAAAATCAAATCGATGCCAACGTCCCAGACAT
Found at i:66827256 original size:44 final size:44
Alignment explanation
Indices: 66827191--66827278 Score: 133
Period size: 44 Copynumber: 2.0 Consensus size: 44
66827181 TTACAGGAAA
* *
66827191 TCAAATACGATGCCGATGTCCCAGACATGGTCTTACACATAAATC
1 TCAAATACGATGCCAACGTCCCAGACATGGTCTTACACA-AAATC
*
66827236 TCAAAT-CGATGCCAACGTCCCAGACGTGGTCTTACACAAAATC
1 TCAAATACGATGCCAACGTCCCAGACATGGTCTTACACAAAATC
66827279 ATATATCGAA
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
43 5 0.12
44 29 0.73
45 6 0.15
ACGTcount: A:0.33, C:0.28, G:0.16, T:0.23
Consensus pattern (44 bp):
TCAAATACGATGCCAACGTCCCAGACATGGTCTTACACAAAATC
Found at i:66828803 original size:68 final size:69
Alignment explanation
Indices: 66828655--66828812 Score: 164
Period size: 68 Copynumber: 2.3 Consensus size: 69
66828645 CTAGCCGATT
* * * *
66828655 TATCTCGTATCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACTCATGCGACCTAGCTACA
1 TATCTCGTAGCTCTCTTGTCTACATGGTGTACATCACTTGGAATCACACATGCGACCTAGCTACA
66828720 TTTA
66 TTTA
* * *
66828724 TCTCTCACGTAGCTCTCTTGTCTACATGG-GATACATC-C-T-GTATCACACATGTGACCTAGCT
1 TATCT--CGTAGCTCTCTTGTCTACATGGTG-TACATCACTTGGAATCACACATGCGACCTAGCT
66828785 ACATTATA
63 ACATT-TA
66828793 GTATCTCGTAGC-CTTCTTGT
1 -TATCTCGTAGCTC-TCTTGT
66828813 ACACATGATG
Statistics
Matches: 75, Mismatches: 8, Indels: 13
0.78 0.08 0.14
Matches are distributed among these distances:
67 1 0.01
68 36 0.48
69 7 0.09
70 6 0.08
71 25 0.33
ACGTcount: A:0.21, C:0.27, G:0.15, T:0.37
Consensus pattern (69 bp):
TATCTCGTAGCTCTCTTGTCTACATGGTGTACATCACTTGGAATCACACATGCGACCTAGCTACA
TTTA
Found at i:66831661 original size:40 final size:44
Alignment explanation
Indices: 66831567--66831663 Score: 130
Period size: 40 Copynumber: 2.3 Consensus size: 44
66831557 ACAATTTCGT
* *
66831567 ACACTTAGTGCCATCTCAATTAACCGAAGCTATCTTGGTATCGC
1 ACACTTAGTGCCATCACAATTAACCGAAGCTATCTTGGAATCGC
* *
66831611 ACACTTAGTGCC-TCAC-A-TAACCGAAGCTAT-TTTGAATTGC
1 ACACTTAGTGCCATCACAATTAACCGAAGCTATCTTGGAATCGC
66831651 ACACTTAGTGCCA
1 ACACTTAGTGCCA
66831664 AATACACTTG
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
40 19 0.40
41 13 0.27
42 1 0.02
43 3 0.06
44 12 0.25
ACGTcount: A:0.29, C:0.27, G:0.15, T:0.29
Consensus pattern (44 bp):
ACACTTAGTGCCATCACAATTAACCGAAGCTATCTTGGAATCGC
Found at i:66834753 original size:22 final size:23
Alignment explanation
Indices: 66834728--66834773 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
66834718 CAACCAAATC
66834728 AATTCA-ACATATTT-TCAAGATA
1 AATTCATACATATTTAT-AAGATA
*
66834750 AATTCATGCATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
66834773 A
1 A
66834774 CGTCATCACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 14 0.67
24 1 0.05
ACGTcount: A:0.46, C:0.11, G:0.07, T:0.37
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:66834779 original size:23 final size:23
Alignment explanation
Indices: 66834735--66834779 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
66834725 ATCAATTCAA
*
66834735 CATATTTTCAAGATAAATTCATG
1 CATATTTTCAAGATAAAGTCATG
*
66834758 CATATTTAT-AAGATAACGTCAT
1 CATATTT-TCAAGATAAAGTCAT
66834780 CACATATCTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.38
Consensus pattern (23 bp):
CATATTTTCAAGATAAAGTCATG
Found at i:66842524 original size:22 final size:23
Alignment explanation
Indices: 66842499--66842544 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
66842489 CAACCAAATC
66842499 AATTCA-ACATATTT-TCAAGATA
1 AATTCATACATATTTAT-AAGATA
*
66842521 AATTCATGCATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
66842544 A
1 A
66842545 CGTCATCACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 14 0.67
24 1 0.05
ACGTcount: A:0.46, C:0.11, G:0.07, T:0.37
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:66842550 original size:23 final size:23
Alignment explanation
Indices: 66842506--66842550 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
66842496 ATCAATTCAA
*
66842506 CATATTTTCAAGATAAATTCATG
1 CATATTTTCAAGATAAAGTCATG
*
66842529 CATATTTAT-AAGATAACGTCAT
1 CATATTT-TCAAGATAAAGTCAT
66842551 CACATATCTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.38
Consensus pattern (23 bp):
CATATTTTCAAGATAAAGTCATG
Found at i:66856391 original size:40 final size:40
Alignment explanation
Indices: 66856344--66856528 Score: 232
Period size: 40 Copynumber: 4.6 Consensus size: 40
66856334 CTTGCACAAG
*
66856344 GCCTTCGGGTCTTAGCCCGGATAT-GATCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAG-TCACTAGCACAAAT
* *
66856384 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
*
66856424 GCCTTCGGGTCTTAGCCCGGATATAG-CAACTCA-CACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-ACT-AGCACAAAT
* * * *
66856464 GCCTTCGGATCTTAGTCCGGTTATAGTCACCTAGCACAAAA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCA-CTAGCACAAAT
*
66856505 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
66856529 CATTCAAATA
Statistics
Matches: 124, Mismatches: 15, Indels: 11
0.83 0.10 0.07
Matches are distributed among these distances:
39 1 0.01
40 93 0.75
41 30 0.24
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:66862989 original size:27 final size:27
Alignment explanation
Indices: 66862958--66863135 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
66862948 TAAATTGTAC
66862958 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
66862985 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
** * *
66863011 ATGCACTAAGTGTGCGAACTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
66863039 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
66863067 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
66863094 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
66863121 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
66863136 GACTCAATAT
Statistics
Matches: 128, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
27 106 0.83
28 22 0.17
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:66863072 original size:82 final size:81
Alignment explanation
Indices: 66862959--66863109 Score: 232
Period size: 82 Copynumber: 1.9 Consensus size: 81
66862949 AAATTGTACA
* *
66862959 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
66863023 TGCGAACTGACCATGCG
65 TGCGAACTGACCATGCG
** *
66863040 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
66863105 TGCGA
65 TGCGA
66863110 GTTGATTATA
Statistics
Matches: 63, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
81 15 0.24
82 47 0.75
83 1 0.02
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAACTGACCATGCG
Found at i:66871027 original size:39 final size:40
Alignment explanation
Indices: 66870855--66871111 Score: 299
Period size: 39 Copynumber: 6.7 Consensus size: 40
66870845 TTGAATGATG
*
66870855 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
66870893 ATCCGGACTAAGAT-CCGAAGG--TTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
66870932 TCC-GGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
66870970 TCC-GGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
66871008 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
66871047 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-TTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
66871085 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
66871112 AACGAGGAGC
Statistics
Matches: 198, Mismatches: 10, Indels: 20
0.87 0.04 0.09
Matches are distributed among these distances:
36 7 0.04
37 6 0.03
38 65 0.33
39 99 0.50
40 21 0.11
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:66871032 original size:77 final size:79
Alignment explanation
Indices: 66870855--66871111 Score: 295
Period size: 77 Copynumber: 3.3 Consensus size: 79
66870845 TTGAATGATG
* *
66870855 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AATATCCGGACTAAGATCCGAAGG--
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT-TCCGG-CTAAGACCCGAAGGCA
66870914 TTTGTGCGAGATACTAAT
62 TTTGTGCGAGATACTAAT
66870932 TCC-GGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAATTCCGGCTAAG-CCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATTCCGGCTAAGACCCGAAGGCATTTG
66870994 TGCGAGATACTAAT
66 TGCGAGATACTAAT
* * * *
66871008 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATTCC-GGCTAAGACCCGAAGGCATTT
*
66871072 GTGCGA-TTACT-AT
65 GTGCGAGATACTAAT
* *
66871085 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
66871112 AACGAGGAGC
Statistics
Matches: 161, Mismatches: 8, Indels: 20
0.85 0.04 0.11
Matches are distributed among these distances:
74 7 0.04
75 14 0.09
76 35 0.22
77 52 0.32
78 20 0.12
79 33 0.20
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (79 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATTCCGGCTAAGACCCGAAGGCATTTG
TGCGAGATACTAAT
Found at i:66871129 original size:79 final size:78
Alignment explanation
Indices: 66870907--66871144 Score: 249
Period size: 79 Copynumber: 3.1 Consensus size: 78
66870897 GGACTAAGAT
* **
66870907 CCGAAGG--TTTGTGCGAGATACTAATTCC-GGCTAAGCCCGAAGGCATTTGTGCGAGAT-ACTA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAG-TGACTA
* *
66870968 ATTCCGGCTAAG-C
65 AATCCGGTTAAGTC
* ** *
66870981 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAA
66871046 ATCCGGGTTAAGTC
66 ATCC-GGTTAAGTC
* *
66871060 CCGAAGGCATTTGTGCGA-TTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-C
* * *
66871122 TATATCCGGTTAAATT
63 TAAATCCGGTTAAGTC
66871138 CCGAAGG
1 CCGAAGG
66871145 TACGTGATTT
Statistics
Matches: 144, Mismatches: 11, Indels: 14
0.85 0.07 0.08
Matches are distributed among these distances:
74 7 0.05
76 22 0.15
77 37 0.26
78 34 0.24
79 44 0.31
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (78 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAA
ATCCGGTTAAGTC
Found at i:66888914 original size:80 final size:79
Alignment explanation
Indices: 66888830--66889001 Score: 220
Period size: 79 Copynumber: 2.2 Consensus size: 79
66888820 GGACTAAGAT
*
66888830 CCGAAGGCATTTGTGCGAGATA-CAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACT
1 CCGAAGGCATTTGTGCGAGATATCAAA-TCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACT
* *
66888894 AAATCCGGGTTAAGTC
64 AAAACCGGGCTAAGTC
* * * * * * *
66888910 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
*
66888975 AACCGGGCTATGTC
66 AACCGGGCTAAGTC
66888989 CCGAAGGCATTTG
1 CCGAAGGCATTTG
66889002 AACGAGGAGC
Statistics
Matches: 79, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
79 38 0.48
80 38 0.48
81 3 0.04
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
AACCGGGCTAAGTC
Found at i:66888981 original size:39 final size:39
Alignment explanation
Indices: 66888777--66888999 Score: 209
Period size: 40 Copynumber: 5.6 Consensus size: 39
66888767 TTGAATGCTG
* * * * *
66888777 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTA-AGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGA-T-ACTAAA
**
66888817 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATAC-AAA
1 TCCGGGTTAAG-TCCCGAAGGCA-TTGTGCGAGATACTAAA
* *
66888856 TTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
1 -TCCGGGTTAAGTCCCGAAGG-CATTGTGCGAGATACTAAA
* *
66888897 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGATACTAAA
* * *
66888937 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAA
* * *
66888976 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
66889000 TGAACGAGGA
Statistics
Matches: 157, Mismatches: 18, Indels: 17
0.82 0.09 0.09
Matches are distributed among these distances:
39 40 0.25
40 103 0.66
41 13 0.08
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAA
Found at i:66889019 original size:79 final size:80
Alignment explanation
Indices: 66888857--66889034 Score: 191
Period size: 79 Copynumber: 2.2 Consensus size: 80
66888847 AGATACAAAT
* * * *
66888857 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
** * *
66888922 GTGCGAGTTATTAAA
66 GAACGAGTGACTAAA
* * * * *
66888937 TCCGGGTTATGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
*
66889001 GAACGAG-GAGCTATA
66 GAACGAGTGA-CTAAA
*
66889016 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
66889035 TACGTGATTT
Statistics
Matches: 81, Mismatches: 16, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
78 15 0.19
79 48 0.59
80 18 0.22
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
GAACGAGTGACTAAA
Found at i:66900312 original size:13 final size:13
Alignment explanation
Indices: 66900296--66900328 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
66900286 TTTGATTAAA
*
66900296 TTAGTTAATTAGT
1 TTAGATAATTAGT
66900309 TTAGATAATTAGT
1 TTAGATAATTAGT
66900322 TTA-ATAA
1 TTAGATAA
66900329 ACAAACCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:66902930 original size:6 final size:5
Alignment explanation
Indices: 66902896--66902950 Score: 60
Period size: 5 Copynumber: 10.8 Consensus size: 5
66902886 CTTTTTATTC
*
66902896 TTTTA TTTTA TTTTA TTTTA TTTCTA TTTTCA TTTCAA TTTTA --TTA
1 TTTTA TTTTA TTTTA TTTTA TTT-TA TTTT-A TTT-TA TTTTA TTTTA
66902942 TTTTA TTTT
1 TTTTA TTTT
66902951 GAAAGACATA
Statistics
Matches: 43, Mismatches: 2, Indels: 10
0.78 0.04 0.18
Matches are distributed among these distances:
3 3 0.07
5 27 0.63
6 13 0.30
ACGTcount: A:0.20, C:0.05, G:0.00, T:0.75
Consensus pattern (5 bp):
TTTTA
Found at i:66907830 original size:17 final size:17
Alignment explanation
Indices: 66907808--66907843 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
66907798 AATAAGCATT
66907808 AATATAATTGTGTTTTA
1 AATATAATTGTGTTTTA
66907825 AATATAATTGTGTTTTA
1 AATATAATTGTGTTTTA
66907842 AA
1 AA
66907844 ATGATTTATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.39, C:0.00, G:0.11, T:0.50
Consensus pattern (17 bp):
AATATAATTGTGTTTTA
Found at i:66908525 original size:30 final size:30
Alignment explanation
Indices: 66908489--66908546 Score: 107
Period size: 30 Copynumber: 1.9 Consensus size: 30
66908479 TAGTGTAACT
66908489 GAAGCTTGCTCAAATTGGGGAGTCGTCACC
1 GAAGCTTGCTCAAATTGGGGAGTCGTCACC
*
66908519 GAAGCTTGCTCGAATTGGGGAGTCGTCA
1 GAAGCTTGCTCAAATTGGGGAGTCGTCA
66908547 GAGATCTCAT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.22, C:0.21, G:0.33, T:0.24
Consensus pattern (30 bp):
GAAGCTTGCTCAAATTGGGGAGTCGTCACC
Found at i:66914506 original size:43 final size:44
Alignment explanation
Indices: 66914407--66914514 Score: 139
Period size: 43 Copynumber: 2.5 Consensus size: 44
66914397 GGTTATCAAG
** *
66914407 ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTTA
1 ATGTGATTACATGTAAGACCATGTCTGGGACAGCGGCATCGATA
* * *
66914451 AT-TGATTTCATGTAAGACCCTGTCTGGGACAGCGGCATTGAT-
1 ATGTGATTACATGTAAGACCATGTCTGGGACAGCGGCATCGATA
*
66914493 ATGTGATAACATGTAAGACCAT
1 ATGTGATTACATGTAAGACCAT
66914515 ATCGGGATAT
Statistics
Matches: 54, Mismatches: 9, Indels: 3
0.82 0.14 0.05
Matches are distributed among these distances:
42 2 0.04
43 50 0.93
44 2 0.04
ACGTcount: A:0.29, C:0.17, G:0.24, T:0.31
Consensus pattern (44 bp):
ATGTGATTACATGTAAGACCATGTCTGGGACAGCGGCATCGATA
Found at i:66916379 original size:20 final size:20
Alignment explanation
Indices: 66916351--66916388 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
66916341 CTAGGAATTA
66916351 TGTGATCTGAGCTCATGAGT
1 TGTGATCTGAGCTCATGAGT
* *
66916371 TGTGGTCTGAGTTCATGA
1 TGTGATCTGAGCTCATGA
66916389 TATATGTGAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.18, C:0.13, G:0.32, T:0.37
Consensus pattern (20 bp):
TGTGATCTGAGCTCATGAGT
Found at i:66925365 original size:40 final size:40
Alignment explanation
Indices: 66925308--66925591 Score: 328
Period size: 40 Copynumber: 7.1 Consensus size: 40
66925298 TCGAATGATG
* * * *
66925308 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGACTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATA
*
66925348 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA
**
66925388 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
66925428 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-A
1 TCCGGACTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA
* * *
66925467 TTCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 -TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
**
66925507 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
* * * **
66925547 ACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATA
1 TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATA
66925587 TCCGG
1 TCCGG
66925592 TTAAATTCCG
Statistics
Matches: 214, Mismatches: 21, Indels: 18
0.85 0.08 0.07
Matches are distributed among these distances:
39 38 0.18
40 167 0.78
41 9 0.04
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
Found at i:66925441 original size:80 final size:80
Alignment explanation
Indices: 66925308--66925591 Score: 389
Period size: 80 Copynumber: 3.6 Consensus size: 80
66925298 TCGAATGATG
* * *
66925308 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATATCCGGACTAAGATCCGAAGGCATT
66925372 TGTGCGAGTTACTAAA
65 TGTGCGAGTTACTAAA
*
66925388 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGACTAAGATCCGAAGGCATTT
*
66925453 GTGCGAGTTACTAAT
66 GTGCGAGTTACTAAA
* * **
66925468 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGACTAAGAT-CCGAAGGCATT
66925531 TGTGCGAGTTACTATAA
65 TGTGCGAGTTACTA-AA
* **
66925548 -CCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATATCCGG
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGG
66925592 TTAAATTCCG
Statistics
Matches: 183, Mismatches: 16, Indels: 10
0.88 0.08 0.05
Matches are distributed among these distances:
78 1 0.01
79 71 0.39
80 104 0.57
81 7 0.04
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGTTACTAAA
Found at i:66925579 original size:119 final size:119
Alignment explanation
Indices: 66925361--66925579 Score: 368
Period size: 119 Copynumber: 1.8 Consensus size: 119
66925351 GGACTAAGAT
*
66925361 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA
1 CCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA
* **
66925426 TATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGC
66 TAACCGGACTAAGATCCGAAGGCATTTGAACGAGTTACTAATTCCGGGCTAAGC
66925480 CCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA
1 CCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA
* *
66925545 TAACCGGGCTATG-TCCCGAAGGCATTTGAACGAGT
66 TAACCGGACTAAGAT-CCGAAGGCATTTGAACGAGT
66925580 AGCTATATCC
Statistics
Matches: 93, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
118 1 0.01
119 92 0.99
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (119 bp):
CCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA
TAACCGGACTAAGATCCGAAGGCATTTGAACGAGTTACTAATTCCGGGCTAAGC
Found at i:66938950 original size:28 final size:27
Alignment explanation
Indices: 66938909--66938961 Score: 79
Period size: 28 Copynumber: 1.9 Consensus size: 27
66938899 GTGGATTATT
* *
66938909 ATTTGGTAATATGAAATTATGTGAATA
1 ATTTGATAATATGAAATTATCTGAATA
66938936 ATTTGATAAGTATGAAATTATCTGAA
1 ATTTGATAA-TATGAAATTATCTGAA
66938962 CTCGTTGAGT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
27 8 0.35
28 15 0.65
ACGTcount: A:0.42, C:0.02, G:0.17, T:0.40
Consensus pattern (27 bp):
ATTTGATAATATGAAATTATCTGAATA
Found at i:66948784 original size:31 final size:31
Alignment explanation
Indices: 66948746--66948810 Score: 103
Period size: 31 Copynumber: 2.1 Consensus size: 31
66948736 GTGACAGCCT
*
66948746 CTTTGATTAAATAATATTTTTTTAATTCATG
1 CTTTGATTAAATAATATTTATTTAATTCATG
* *
66948777 CTTTGATTATATAATATTTATTTGATTCATG
1 CTTTGATTAAATAATATTTATTTAATTCATG
66948808 CTT
1 CTT
66948811 ATAATGTTTC
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.29, C:0.08, G:0.08, T:0.55
Consensus pattern (31 bp):
CTTTGATTAAATAATATTTATTTAATTCATG
Found at i:66956593 original size:40 final size:40
Alignment explanation
Indices: 66956538--66956701 Score: 224
Period size: 40 Copynumber: 4.1 Consensus size: 40
66956528 CAGATGATAA
* * *
66956538 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
66956578 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
66956618 CCGGGCTAAGCCCCGAAGGCAATTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
66956658 CCGGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
66956698 CCGG
1 CCGG
66956702 TTAAATCCCA
Statistics
Matches: 112, Mismatches: 10, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
39 3 0.03
40 109 0.97
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:66958813 original size:47 final size:47
Alignment explanation
Indices: 66958707--66958972 Score: 147
Period size: 47 Copynumber: 5.7 Consensus size: 47
66958697 AGGGTAAGGT
* * *
66958707 GCCGATGCCATGTCCTAGACACGGTCCTACACTGGCTCATATCTCAA
1 GCCGATGCCATGTCCTAGACATGGTCTTACACTGACTCATATCTCAA
** *
66958754 GTTGATGCCATGTCCTAGACATGGTCTTATACTGACT-ATCATCTCATA
1 GCCGATGCCATGTCCTAGACATGGTCTTACACTGACTCAT-ATCTCA-A
* * * * * ** *
66958802 GCCGATG-CATGTCCCAAACAT-GTCTTACATTGGCTTACGTCTCGAG
1 GCCGATGCCATGTCCTAGACATGGTCTTACACTGACTCATATCTC-AA
** * * * * *
66958848 GATGATG-CATGTCCCAAACAT-GTCTTACACT-AGTCCTCGTCTCAA
1 GCCGATGCCATGTCCTAGACATGGTCTTACACTGACTCAT-ATCTCAA
* * * * *
66958893 TGCGGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAATGT--G
1 -GCCGATGCCATGTCCTAGACATGGTCTTACACT-G-ACTCAT-ATCTCAA
*
66958942 GCCGATG-CATGTCCCAGACAT-GTCTTACACT
1 GCCGATGCCATGTCCTAGACATGGTCTTACACT
66958973 AGCTCACACA
Statistics
Matches: 172, Mismatches: 36, Indels: 23
0.74 0.16 0.10
Matches are distributed among these distances:
45 2 0.01
46 65 0.38
47 78 0.45
48 22 0.13
51 5 0.03
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.29
Consensus pattern (47 bp):
GCCGATGCCATGTCCTAGACATGGTCTTACACTGACTCATATCTCAA
Found at i:66958889 original size:46 final size:45
Alignment explanation
Indices: 66958802--66958975 Score: 170
Period size: 46 Copynumber: 3.8 Consensus size: 45
66958792 TCATCTCATA
* * *
66958802 GCCGATGCATGTCCCAAACATGTCTTACATTGGCTTACGTCTCGAG
1 GCCGATGCATGTCCCAAACATGTCTTACACTAGCCT-CGTCTCGAG
** * *
66958848 GATGATGCATGTCCCAAACATGTCTTACACTAGTCCTCGTCTCAAT
1 GCCGATGCATGTCCCAAACATGTCTTACACTAG-CCTCGTCTCGAG
* * * * *
66958894 GCGGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAAT-GTG
1 GCCGATG-CATGTCCCAAACAT-GTCTTACACTAGC-CTCGT-CTCGAG
*
66958942 GCCGATGCATGTCCCAGACATGTCTTACACTAGC
1 GCCGATGCATGTCCCAAACATGTCTTACACTAGC
66958976 TCACACATGA
Statistics
Matches: 107, Mismatches: 16, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
46 54 0.50
47 30 0.28
48 22 0.21
49 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.28
Consensus pattern (45 bp):
GCCGATGCATGTCCCAAACATGTCTTACACTAGCCTCGTCTCGAG
Found at i:66963926 original size:68 final size:68
Alignment explanation
Indices: 66963817--66963954 Score: 231
Period size: 68 Copynumber: 2.0 Consensus size: 68
66963807 TCAAGGTTGA
* ** *
66963817 AGTTATTTCATGGGAAGCTTAAATCCCAATGGAAAGGACCCTATACCATCTACTGAGTTTATCCT
1 AGTTATTTCATAGGAAGCTTAAATCCCAATGGAAAAAACCCTATACCATCTACCGAGTTTATCCT
66963882 TAT
66 TAT
*
66963885 AGTTATTTCCTAGGAAGCTTAAATCCCAATGGAAAAAACCCTATACCATCTACCGAGTTTATCCT
1 AGTTATTTCATAGGAAGCTTAAATCCCAATGGAAAAAACCCTATACCATCTACCGAGTTTATCCT
66963950 TAT
66 TAT
66963953 AG
1 AG
66963955 AGCTATTGAA
Statistics
Matches: 65, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
68 65 1.00
ACGTcount: A:0.33, C:0.22, G:0.14, T:0.31
Consensus pattern (68 bp):
AGTTATTTCATAGGAAGCTTAAATCCCAATGGAAAAAACCCTATACCATCTACCGAGTTTATCCT
TAT
Found at i:66989591 original size:43 final size:43
Alignment explanation
Indices: 66989544--66989635 Score: 139
Period size: 43 Copynumber: 2.1 Consensus size: 43
66989534 TTTGGAACAA
** *
66989544 TGGCATCATTAATCGATTTCGTGTAAGAGTATGTCTGGGATAT
1 TGGCATCATTAATCGATTTCGTGTAAGACCATGTCTGGGATAG
* *
66989587 TGGCATCGTTAATCGATTTCGTGTAAGACCCTGTCTGGGATAG
1 TGGCATCATTAATCGATTTCGTGTAAGACCATGTCTGGGATAG
66989630 TGGCAT
1 TGGCAT
66989636 TGATATGTGA
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.23, C:0.15, G:0.27, T:0.35
Consensus pattern (43 bp):
TGGCATCATTAATCGATTTCGTGTAAGACCATGTCTGGGATAG
Found at i:66996712 original size:20 final size:20
Alignment explanation
Indices: 66996687--66996746 Score: 111
Period size: 20 Copynumber: 3.0 Consensus size: 20
66996677 ACATGTAGTA
66996687 GCCTGCACTTAGTACTACAC
1 GCCTGCACTTAGTACTACAC
*
66996707 GCCTGCACTTAGTACTACAT
1 GCCTGCACTTAGTACTACAC
66996727 GCCTGCACTTAGTACTACAC
1 GCCTGCACTTAGTACTACAC
66996747 ACGTGACCAA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.25, C:0.33, G:0.15, T:0.27
Consensus pattern (20 bp):
GCCTGCACTTAGTACTACAC
Found at i:66996787 original size:49 final size:51
Alignment explanation
Indices: 66996730--66996847 Score: 159
Period size: 51 Copynumber: 2.4 Consensus size: 51
66996720 ACTACATGCC
* *
66996730 TGCACTTAGTACTACACACGTGA-C-CAATTATCCGGTACACGTAGTAGCT
1 TGCACTTAGTACTACACACGTGATCACAATTATCCGGTACACATAGTAGCA
* * * * *
66996779 TGCACTTAGTACTACACACGTGATCACAGTTTTCGGGTACGCATTGTAGCA
1 TGCACTTAGTACTACACACGTGATCACAATTATCCGGTACACATAGTAGCA
66996830 TGCACTTAGTACTACACA
1 TGCACTTAGTACTACACA
66996848 TGCGACCTCA
Statistics
Matches: 60, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
49 23 0.38
50 1 0.02
51 36 0.60
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (51 bp):
TGCACTTAGTACTACACACGTGATCACAATTATCCGGTACACATAGTAGCA
Found at i:67005974 original size:43 final size:43
Alignment explanation
Indices: 67005911--67006026 Score: 146
Period size: 43 Copynumber: 2.7 Consensus size: 43
67005901 GATGTAATTA
67005911 CGTGTAAGACCTTAT-T-TGGGACAATGGCATCATTAATCGATTT
1 CGTGTAAGA-C-TATGTCTGGGACAATGGCATCATTAATCGATTT
* *
67005954 CGTGTAAGACTATGTCTGGGACATTGGCATCGTTAATCGATTT
1 CGTGTAAGACTATGTCTGGGACAATGGCATCATTAATCGATTT
** * *
67005997 CGTGTAAGACCCTGTCTGGGATAGTGGCAT
1 CGTGTAAGACTATGTCTGGGACAATGGCAT
67006027 TGATATTTGA
Statistics
Matches: 65, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
41 3 0.05
42 2 0.03
43 60 0.92
ACGTcount: A:0.24, C:0.17, G:0.26, T:0.33
Consensus pattern (43 bp):
CGTGTAAGACTATGTCTGGGACAATGGCATCATTAATCGATTT
Found at i:67008338 original size:43 final size:43
Alignment explanation
Indices: 67008254--67008403 Score: 137
Period size: 43 Copynumber: 3.5 Consensus size: 43
67008244 TCTGAGACAT
* *
67008254 CGTGTAAGACCATGTCTGGGACACAGGCCTC-A-ATTGAGATTTA
1 CGTGTAAGACCATGTCTGGGACAGAGGCATCGATATT--GATTTA
* * **
67008297 CGTATAAGACCATGTTTGGGACATTGGCATCG-TATCTGATTT-
1 CGTGTAAGACCATGTCTGGGACAGAGGCATCGATAT-TGATTTA
* * *
67008339 TGTGTAAGACCCTGTCTGGGACAGAGGCATCGATATTGAATTA
1 CGTGTAAGACCATGTCTGGGACAGAGGCATCGATATTGATTTA
* * *
67008382 CATGTAAGACCACGTCCGGGAC
1 CGTGTAAGACCATGTCTGGGAC
67008404 GTCGACATTG
Statistics
Matches: 85, Mismatches: 17, Indels: 10
0.76 0.15 0.09
Matches are distributed among these distances:
42 31 0.36
43 51 0.60
44 2 0.02
45 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.27
Consensus pattern (43 bp):
CGTGTAAGACCATGTCTGGGACAGAGGCATCGATATTGATTTA
Found at i:67013361 original size:20 final size:20
Alignment explanation
Indices: 67013336--67013375 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
67013326 ACATGTAGTA
67013336 GCCTGCACTTAGTACTACAC
1 GCCTGCACTTAGTACTACAC
67013356 GCCTGCACTTAGTACTACAC
1 GCCTGCACTTAGTACTACAC
67013376 ACGTGACCAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.25, C:0.35, G:0.15, T:0.25
Consensus pattern (20 bp):
GCCTGCACTTAGTACTACAC
Found at i:67013371 original size:69 final size:69
Alignment explanation
Indices: 67013287--67013424 Score: 213
Period size: 69 Copynumber: 2.0 Consensus size: 69
67013277 ACGCATAGTA
* * * * *
67013287 GCCTGCTCATAGTACTACACATGCGACTAATTATCCGGTACATGTAGTAGCCTGCACTTAGTACT
1 GCCTGCACATAGTACTACACACGCGACCAATTATCCGGTACACGTAGTAGCATGCACTTAGTACT
67013352 ACAC
66 ACAC
* *
67013356 GCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACGTAGTAGCATGCACTTAGTACT
1 GCCTGCACATAGTACTACACACGCGACCAATTATCCGGTACACGTAGTAGCATGCACTTAGTACT
67013421 ACAC
66 ACAC
67013425 ACGTGACCTA
Statistics
Matches: 62, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
69 62 1.00
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (69 bp):
GCCTGCACATAGTACTACACACGCGACCAATTATCCGGTACACGTAGTAGCATGCACTTAGTACT
ACAC
Found at i:67013469 original size:50 final size:49
Alignment explanation
Indices: 67013359--67013480 Score: 181
Period size: 50 Copynumber: 2.5 Consensus size: 49
67013349 ACTACACGCC
** *
67013359 TGCACTTAGTACTACACACGTGACCAATTATCCGGTACACGTAGTAGCA
1 TGCACTTAGTACTACACACGTGACCAACCATCCGATACACGTAGTAGCA
* *
67013408 TGCACTTAGTACTACACACGTGACCTAACCATCTGATACACGTAGTAGCT
1 TGCACTTAGTACTACACACGTGACC-AACCATCCGATACACGTAGTAGCA
*
67013458 TGCACTTAGTACTACATACGTGA
1 TGCACTTAGTACTACACACGTGA
67013481 TCACAGTTTT
Statistics
Matches: 66, Mismatches: 6, Indels: 1
0.90 0.08 0.01
Matches are distributed among these distances:
49 25 0.38
50 41 0.62
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (49 bp):
TGCACTTAGTACTACACACGTGACCAACCATCCGATACACGTAGTAGCA
Found at i:67018706 original size:43 final size:42
Alignment explanation
Indices: 67018624--67018767 Score: 130
Period size: 43 Copynumber: 3.4 Consensus size: 42
67018614 TGAGACATCG
** *
67018624 TGTAAGACTGTGTCTGGGACATAGGCCTCG-ATTGAGATTTACA
1 TGTAAGACCATGTCTGGGACATAGGCATCGTATT--GATTTACA
* * **
67018667 TATAAGACCATGTCTGGGACATCGGCATCGTATCTGATTT-TG
1 TGTAAGACCATGTCTGGGACATAGGCATCGTAT-TGATTTACA
* * * * *
67018709 TGTAAGACCCTGTCTAGGACAAAGGCATCATTATTGAATTACA
1 TGTAAGACCATGTCTGGGACATAGGCATC-GTATTGATTTACA
67018752 TGTAAGACCATGTCTG
1 TGTAAGACCATGTCTG
67018768 CGATGTCGGC
Statistics
Matches: 79, Mismatches: 18, Indels: 8
0.75 0.17 0.08
Matches are distributed among these distances:
42 29 0.37
43 47 0.59
44 2 0.03
45 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.31
Consensus pattern (42 bp):
TGTAAGACCATGTCTGGGACATAGGCATCGTATTGATTTACA
Found at i:67027350 original size:13 final size:13
Alignment explanation
Indices: 67027334--67027358 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
67027324 ATGCGGGCAC
67027334 GCCATGTGGTCAT
1 GCCATGTGGTCAT
67027347 GCCATGTGGTCA
1 GCCATGTGGTCA
67027359 CACATGTTCG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.24, G:0.32, T:0.28
Consensus pattern (13 bp):
GCCATGTGGTCAT
Found at i:67031816 original size:27 final size:27
Alignment explanation
Indices: 67031786--67031963 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
67031776 ATATTGAGTC
* * * *
67031786 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
67031813 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
67031840 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
67031868 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
67031895 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
67031922 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
67031949 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
67031964 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:67031925 original size:82 final size:81
Alignment explanation
Indices: 67031807--67031962 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
67031797 TGCTATATAA
* *
67031807 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
67031872 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
67031889 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
67031953 CACTTAGTGC
65 CACTTAGTGC
67031963 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:67032462 original size:12 final size:12
Alignment explanation
Indices: 67032445--67032471 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
67032435 ATGGCATACT
67032445 TATGTATATATA
1 TATGTATATATA
67032457 TATGTATATATA
1 TATGTATATATA
67032469 TAT
1 TAT
67032472 ACTTCGGAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.41, C:0.00, G:0.07, T:0.52
Consensus pattern (12 bp):
TATGTATATATA
Found at i:67039139 original size:27 final size:28
Alignment explanation
Indices: 67039123--67039357 Score: 272
Period size: 27 Copynumber: 8.7 Consensus size: 28
67039113 CTCAATTAGC
*
67039123 AAAATTACCAAAATACCC-CTGGTTTGT
1 AAAATTACCAAAATACCCTCTGATTTGT
*
67039150 AAAATTACCAAAATA-CCTCTGGTTTGT
1 AAAATTACCAAAATACCCTCTGATTTGT
67039177 AAAATTACCAAAATACCC-CT-AGTTTGT
1 AAAATTACCAAAATACCCTCTGA-TTTGT
*
67039204 GAAATTACCAAAATACCC-CTGATTTGT
1 AAAATTACCAAAATACCCTCTGATTTGT
* ** *
67039231 GAAATTACTGAAATACCCTC-GACTTGT
1 AAAATTACCAAAATACCCTCTGATTTGT
* *
67039258 AAAATTACCAAAATACCCT-TGGTTTAT
1 AAAATTACCAAAATACCCTCTGATTTGT
67039285 AAAATTACCAAAATACCC-CTGATTTGT
1 AAAATTACCAAAATACCCTCTGATTTGT
* * * * *
67039312 GAAATTACTAAAATATCCTC-AACTTGT
1 AAAATTACCAAAATACCCTCTGATTTGT
67039339 AAAATTACCAAAATACCCT
1 AAAATTACCAAAATACCCT
67039358 TGTAGGGTAG
Statistics
Matches: 179, Mismatches: 21, Indels: 16
0.83 0.10 0.07
Matches are distributed among these distances:
26 2 0.01
27 172 0.96
28 5 0.03
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (28 bp):
AAAATTACCAAAATACCCTCTGATTTGT
Found at i:67039357 original size:81 final size:80
Alignment explanation
Indices: 67039123--67039359 Score: 348
Period size: 81 Copynumber: 2.9 Consensus size: 80
67039113 CTCAATTAGC
* * * **
67039123 AAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCTCTGGTTTGTAAAATTACCAA
1 AAAATTACCAAAATACCCCTGATTTGTGAAATTACTAAAATACCTC-GACTTGTAAAATTACCAA
* * *
67039188 AATACCCCTAGTTTGT
65 AATACCCTTGGTTTAT
* *
67039204 GAAATTACCAAAATACCCCTGATTTGTGAAATTACTGAAATACCCTCGACTTGTAAAATTACCAA
1 AAAATTACCAAAATACCCCTGATTTGTGAAATTACTAAAATA-CCTCGACTTGTAAAATTACCAA
67039269 AATACCCTTGGTTTAT
65 AATACCCTTGGTTTAT
*
67039285 AAAATTACCAAAATACCCCTGATTTGTGAAATTACTAAAATATCCTCAACTTGTAAAATTACCAA
1 AAAATTACCAAAATACCCCTGATTTGTGAAATTACTAAAATA-CCTCGACTTGTAAAATTACCAA
67039350 AATACCCTTG
65 AATACCCTTG
67039360 TAGGGTAGAA
Statistics
Matches: 141, Mismatches: 14, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
81 137 0.97
82 4 0.03
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.30
Consensus pattern (80 bp):
AAAATTACCAAAATACCCCTGATTTGTGAAATTACTAAAATACCTCGACTTGTAAAATTACCAAA
ATACCCTTGGTTTAT
Found at i:67039371 original size:27 final size:27
Alignment explanation
Indices: 67039341--67039509 Score: 221
Period size: 27 Copynumber: 6.3 Consensus size: 27
67039331 CAACTTGTAA
*
67039341 AATTACCAAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* *
67039368 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
*
67039395 AGTTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
*
67039422 AAATACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* ** *
67039449 AAATAATGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* * * *
67039476 AATTATCGAGATACCCTTGTGGGGTAA
1 AATTACCGAAATACCCTTGTAGGGTAG
67039503 AATTACC
1 AATTACC
67039510 ATTTTGCCCC
Statistics
Matches: 123, Mismatches: 19, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 123 1.00
ACGTcount: A:0.35, C:0.18, G:0.22, T:0.25
Consensus pattern (27 bp):
AATTACCGAAATACCCTTGTAGGGTAG
Found at i:67039372 original size:81 final size:79
Alignment explanation
Indices: 67039125--67039386 Score: 328
Period size: 81 Copynumber: 3.2 Consensus size: 79
67039115 CAATTAGCAA
* * * **
67039125 AATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCTCTGGTTTGTAAAATTACCAAAA
1 AATTACCAAAATACCCCTGATTTGTGAAATTACTAAAATACCTC-GACTTGTAAAATTACCAAAA
*
67039190 TACCCCTAGTTTGT-G
65 TA-CCCTTGTTTGTAG
*
67039205 AAATTACCAAAATACCCCTGATTTGTGAAATTACTGAAATACCCTCGACTTGTAAAATTACCAAA
1 -AATTACCAAAATACCCCTGATTTGTGAAATTACTAAAATA-CCTCGACTTGTAAAATTACCAAA
* *
67039270 ATACCCTTGGTTTATAA
64 ATACCCTT-GTTTGTAG
*
67039287 AATTACCAAAATACCCCTGATTTGTGAAATTACTAAAATATCCTCAACTTGTAAAATTACCAAAA
1 AATTACCAAAATACCCCTGATTTGTGAAATTACTAAAATA-CCTCGACTTGTAAAATTACCAAAA
**
67039352 TACCCTTGTAGGGTAG
65 TACCCTTGT-TTGTAG
**
67039368 AATTACTGAAATACCCCTG
1 AATTACCAAAATACCCCTG
67039387 TAGGGTAGAG
Statistics
Matches: 159, Mismatches: 18, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
80 6 0.04
81 149 0.94
82 4 0.03
ACGTcount: A:0.38, C:0.21, G:0.11, T:0.30
Consensus pattern (79 bp):
AATTACCAAAATACCCCTGATTTGTGAAATTACTAAAATACCTCGACTTGTAAAATTACCAAAAT
ACCCTTGTTTGTAG
Found at i:67039407 original size:81 final size:81
Alignment explanation
Indices: 67039233--67039480 Score: 236
Period size: 81 Copynumber: 3.1 Consensus size: 81
67039223 TGATTTGTGA
* *** * **
67039233 AATTACTGAAATACCCTCGACTTGTAAAATTACCAAAATACCCTTGGT-TTATAAAATTACCAAA
1 AATTACTGAAATACCCTCAACTTGTAAAATTACCAAAATACCCTT-GTAGGGTAGAATTACTGAA
**
67039297 ATACCCCTG-ATTTGT-G
65 ATACCCCTGTA-GGGTAG
* *
67039313 AAATTACTAAAATATCCTCAACTTGTAAAATTACCAAAATACCCTTGTAGGGTAGAATTACTGAA
1 -AATTACTGAAATACCCTCAACTTGTAAAATTACCAAAATACCCTTGTAGGGTAGAATTACTGAA
67039378 ATACCCCTGTAGGGTAG
65 ATACCCCTGTAGGGTAG
* * ** ** * * *
67039395 AGTTACCGAAATACCCTTGTA-GGGTAGAAA-TACCGAAATACCCTTGTAGGGTAGAAATAATGA
1 AATTACTGAAATACCC-TCAACTTGTA-AAATTACCAAAATACCCTTGTAGGGTAGAATTACTGA
67039458 AATACCCCTGTAGGGTAG
64 AATACCCCTGTAGGGTAG
67039476 AATTA
1 AATTA
67039481 TCGAGATACC
Statistics
Matches: 139, Mismatches: 23, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
80 2 0.01
81 130 0.94
82 7 0.05
ACGTcount: A:0.38, C:0.19, G:0.16, T:0.28
Consensus pattern (81 bp):
AATTACTGAAATACCCTCAACTTGTAAAATTACCAAAATACCCTTGTAGGGTAGAATTACTGAAA
TACCCCTGTAGGGTAG
Found at i:67039490 original size:81 final size:80
Alignment explanation
Indices: 67039337--67039510 Score: 258
Period size: 81 Copynumber: 2.1 Consensus size: 80
67039327 TCCTCAACTT
* * *
67039337 GTAAAATTACCAAAATACCCTTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAGTTACC
1 GTAAAA-TACCAAAATACCCTTGTAGGGTAGAAATAATGAAATACCCCTGTAGGGTAGAATTACC
67039402 GAAATACCCTTGTAGG
65 GAAATACCCTTGTAGG
* *
67039418 GTAGAAATACCGAAATACCCTTGTAGGGTAGAAATAATGAAATACCCCTGTAGGGTAGAATTATC
1 GTA-AAATACCAAAATACCCTTGTAGGGTAGAAATAATGAAATACCCCTGTAGGGTAGAATTACC
* *
67039483 GAGATACCCTTGTGGG
65 GAAATACCCTTGTAGG
67039499 GTAAAATTACCA
1 GTAAAA-TACCA
67039511 TTTTGCCCCT
Statistics
Matches: 83, Mismatches: 8, Indels: 4
0.87 0.08 0.04
Matches are distributed among these distances:
80 3 0.04
81 77 0.93
82 3 0.04
ACGTcount: A:0.36, C:0.17, G:0.22, T:0.25
Consensus pattern (80 bp):
GTAAAATACCAAAATACCCTTGTAGGGTAGAAATAATGAAATACCCCTGTAGGGTAGAATTACCG
AAATACCCTTGTAGG
Found at i:67039771 original size:24 final size:24
Alignment explanation
Indices: 67039739--67039785 Score: 60
Period size: 25 Copynumber: 2.0 Consensus size: 24
67039729 TAGTTTACCA
**
67039739 AAAAGGGCTTTGCC-CCAGTTATT
1 AAAAGGGCTAGGCCTCCAGTTATT
67039762 AAAAGAGGCTAGGCCTCCAGTTAT
1 AAAAG-GGCTAGGCCTCCAGTTAT
67039786 ATGATAAAGC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 5 0.25
24 7 0.35
25 8 0.40
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTAGGCCTCCAGTTATT
Found at i:67043868 original size:29 final size:30
Alignment explanation
Indices: 67043802--67043856 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
67043792 CATAACATCT
*
67043802 CATATTTTTCATTATTTCACACATTTACCA
1 CATAATTTTCATTATTTCACACATTTACCA
*
67043832 CATAATTTTCATT-TTTCTCA-ATTTA
1 CATAATTTTCATTATTTCACACATTTA
67043857 ACCCCCTAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
28 5 0.22
29 6 0.26
30 12 0.52
ACGTcount: A:0.29, C:0.20, G:0.00, T:0.51
Consensus pattern (30 bp):
CATAATTTTCATTATTTCACACATTTACCA
Found at i:67050007 original size:46 final size:46
Alignment explanation
Indices: 67049940--67050109 Score: 204
Period size: 46 Copynumber: 3.7 Consensus size: 46
67049930 AACCCGCCCC
*
67049940 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
* * *
67049986 TAAGTGAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCATCCA
* * *
67050034 TCA-TGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
67050079 TAAGTGAACTCGGACTCAACTCAACGAGTTC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTC
67050110 AGATGCTCAA
Statistics
Matches: 104, Mismatches: 11, Indels: 18
0.78 0.08 0.14
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 1 0.01
45 2 0.02
46 58 0.56
47 28 0.27
48 3 0.03
49 1 0.01
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
Found at i:67050052 original size:93 final size:93
Alignment explanation
Indices: 67049944--67050115 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
67049934 CGCCCCTAAG
* *
67049944 TGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCAGACTCAACTCA
1 TGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
*
67050009 ACGAGTTCGGATGCCTAGTTACATTTCA
66 ACGAGTTCAGATGCCTAGTTACATTTCA
* *
67050037 TGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 TGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
67050102 ACGAGTTCAGATGC
66 ACGAGTTCAGATGC
67050116 TCAACCATAC
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (93 bp):
TGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
ACGAGTTCAGATGCCTAGTTACATTTCA
Found at i:67052514 original size:15 final size:15
Alignment explanation
Indices: 67052488--67052542 Score: 78
Period size: 15 Copynumber: 3.7 Consensus size: 15
67052478 CAAGGAAACC
67052488 GAATAAAGAAATCCA
1 GAATAAAGAAATCCA
*
67052503 -AGATAGAGAAAT-CA
1 GA-ATAAAGAAATCCA
67052517 GAATAAAGAAATCCA
1 GAATAAAGAAATCCA
67052532 GAATAAAGAAA
1 GAATAAAGAAA
67052543 CCCAAGATAC
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
14 12 0.34
15 23 0.66
ACGTcount: A:0.62, C:0.09, G:0.16, T:0.13
Consensus pattern (15 bp):
GAATAAAGAAATCCA
Found at i:67053626 original size:30 final size:30
Alignment explanation
Indices: 67053592--67053651 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
67053582 GGCCAAACAA
67053592 ACATAGATATTTGCATCACAATCACAACTT
1 ACATAGATATTTGCATCACAATCACAACTT
67053622 ACATAGATATTTGCATCACAATCACAACTT
1 ACATAGATATTTGCATCACAATCACAACTT
67053652 TCATTTCGTG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.40, C:0.23, G:0.07, T:0.30
Consensus pattern (30 bp):
ACATAGATATTTGCATCACAATCACAACTT
Found at i:67055701 original size:93 final size:93
Alignment explanation
Indices: 67055542--67055712 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
67055532 GCCGCTAAGT
* *
67055542 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACACAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACACAA
67055607 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
* *
67055635 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACACAA
67055700 CGAGTTCGGATGC
66 CGAGTTCGGATGC
67055713 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.29, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACACAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:67055709 original size:46 final size:46
Alignment explanation
Indices: 67055537--67055709 Score: 201
Period size: 46 Copynumber: 3.7 Consensus size: 46
67055527 AACCCGCCGC
* * *
67055537 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
* * *
67055583 TAAGTGAACTCGGACTCAACACAACGAGTTCGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
67055631 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
67055676 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
67055710 TGCTCAACCA
Statistics
Matches: 105, Mismatches: 13, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 60 0.57
47 28 0.27
48 2 0.02
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.21
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:67057513 original size:40 final size:40
Alignment explanation
Indices: 67057467--67057651 Score: 237
Period size: 40 Copynumber: 4.6 Consensus size: 40
67057457 CTTGCACAAG
* * *
67057467 GCCTTCGGGTCTTAGCCCGGATGTGGTCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
67057507 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
67057547 GCCTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAAT
* * * *
67057587 GCCTTCGGATCTTAGTCCGGTTATAGTCACCTAGCACAAAA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCA-CTAGCACAAAT
*
67057628 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
67057652 CATTCGAATA
Statistics
Matches: 123, Mismatches: 19, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
39 1 0.01
40 93 0.76
41 29 0.24
ACGTcount: A:0.23, C:0.28, G:0.25, T:0.25
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:67062893 original size:39 final size:39
Alignment explanation
Indices: 67062800--67062982 Score: 183
Period size: 39 Copynumber: 4.6 Consensus size: 39
67062790 TATTCGAATG
*
67062800 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGT-CCGAAGGCATTTGTGCTA-GTGACT
* * *
67062841 ATAAT-CGGACTAAGATCCGAAGGCATTCGT-CGAGTTG-CT
1 AT-ATCCGGGCTAAG-TCCGAAGGCATTTGTGCTAG-TGACT
* *
67062880 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCGAAGGCATTTGTGCTAGTGACT
* *
67062920 ATATCCGGGCTAAGTCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCGAAGGCATTTGTGCTAGTGACT
* * *
67062959 ACATCTGGGCTAAGACCAGAAGGC
1 ATATCCGGGCTAAGTCC-GAAGGC
67062983 CTTGTGCAAG
Statistics
Matches: 119, Mismatches: 16, Indels: 15
0.79 0.11 0.10
Matches are distributed among these distances:
38 2 0.02
39 63 0.53
40 29 0.24
41 22 0.18
42 3 0.03
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (39 bp):
ATATCCGGGCTAAGTCCGAAGGCATTTGTGCTAGTGACT
Found at i:67062973 original size:79 final size:80
Alignment explanation
Indices: 67062802--67062982 Score: 208
Period size: 79 Copynumber: 2.3 Consensus size: 80
67062792 TTCGAATGAT
* * *
67062802 ATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAATCGGACTAAGATCCGAAGGCAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGGCGACTATAATCGGACTAAGATCCGAAGGCAT
* * *
67062867 TCGTCGAGTTGCTAT
66 TCATCGAGTTGCCAC
*
67062882 ATCCGGGCTAAGACCCGAAGGCATTTGTGCTA-GCGACTAT-ATCCGGGCTAAG-TCCGAAGGCA
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGGCGACTATAAT-CGGACTAAGATCCGAAGGCA
* *
67062944 TTTATGCTAG-TGACCAC
65 TTCAT-CGAGTTG-CCAC
* *
67062961 ATCTGGGCTAAGACCAGAAGGC
1 ATCCGGGCTAAGACCCGAAGGC
67062983 CTTGTGCAAG
Statistics
Matches: 87, Mismatches: 11, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
78 17 0.20
79 40 0.46
80 30 0.34
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGGCGACTATAATCGGACTAAGATCCGAAGGCAT
TCATCGAGTTGCCAC
Found at i:67070724 original size:40 final size:40
Alignment explanation
Indices: 67070679--67070863 Score: 237
Period size: 40 Copynumber: 4.6 Consensus size: 40
67070669 CTTGCACAAG
* * *
67070679 GCCTTCGGGTCTTAGCCCGGATGTGGTCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
67070719 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
67070759 GCCTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAAT
* * * *
67070799 GCCTTCGGATCTTAGTCCGGTTATAGTCACCTAGCACAAAA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCA-CTAGCACAAAT
*
67070840 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
67070864 CATTCGAATA
Statistics
Matches: 123, Mismatches: 19, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
39 1 0.01
40 93 0.76
41 29 0.24
ACGTcount: A:0.23, C:0.28, G:0.25, T:0.25
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:67074462 original size:27 final size:26
Alignment explanation
Indices: 67074427--67074594 Score: 185
Period size: 27 Copynumber: 6.3 Consensus size: 26
67074417 GGTAAAATAG
* *
67074427 TCATCTTACCATAAAAGGGCAAAACAA
1 TCATTTTACC-TATAAGGGCAAAACAA
* * *
67074454 CCATTTTACCATATAAGGGAAAAACAG
1 TCATTTTACC-TATAAGGGCAAAACAA
* * *
67074481 TCATTTTGCCTCATAAGGGCAATACAG
1 TCATTTTACCT-ATAAGGGCAAAACAA
67074508 TCATTTTACCTATAAGGG-AAAACAA
1 TCATTTTACCTATAAGGGCAAAACAA
* *
67074533 TCATTTTACCCCATAAGGGCAAAACAG
1 TCATTTTA-CCTATAAGGGCAAAACAA
*
67074560 TCATTTTACCCCATAAGGGCAAAACAA
1 TCATTTTA-CCTATAAGGGCAAAACAA
67074587 TCATTTTA
1 TCATTTTA
67074595 TCGATTAAGG
Statistics
Matches: 123, Mismatches: 15, Indels: 6
0.85 0.10 0.04
Matches are distributed among these distances:
25 13 0.11
26 17 0.14
27 93 0.76
ACGTcount: A:0.40, C:0.21, G:0.13, T:0.26
Consensus pattern (26 bp):
TCATTTTACCTATAAGGGCAAAACAA
Found at i:67074538 original size:79 final size:81
Alignment explanation
Indices: 67074411--67074594 Score: 237
Period size: 79 Copynumber: 2.3 Consensus size: 81
67074401 ACATACATCA
* * * * *
67074411 CATAGGGGTAAAATAGTCATCTTACCATAAAAGGGCAAAACAACCATTTTACCATATAAGGGAAA
1 CATAAGGGCAAAACAGTCATTTTACCATAAAAGGGCAAAACAACCATTTTACCACATAAGGGAAA
* *
67074476 AACAGTCATTTTGCCT
66 AACAGTCATTTTACCC
* * * * *
67074492 CATAAGGGCAATACAGTCATTTTACC-TATAAGGG-AAAACAATCATTTTACCCCATAAGGGCAA
1 CATAAGGGCAAAACAGTCATTTTACCATAAAAGGGCAAAACAACCATTTTACCACATAAGGGAAA
67074555 AACAGTCATTTTACCC
66 AACAGTCATTTTACCC
*
67074571 CATAAGGGCAAAACAATCATTTTA
1 CATAAGGGCAAAACAGTCATTTTA
67074595 TCGATTAAGG
Statistics
Matches: 89, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
79 61 0.69
80 7 0.08
81 21 0.24
ACGTcount: A:0.40, C:0.20, G:0.15, T:0.25
Consensus pattern (81 bp):
CATAAGGGCAAAACAGTCATTTTACCATAAAAGGGCAAAACAACCATTTTACCACATAAGGGAAA
AACAGTCATTTTACCC
Found at i:67074548 original size:52 final size:53
Alignment explanation
Indices: 67074441--67074594 Score: 211
Period size: 52 Copynumber: 2.9 Consensus size: 53
67074431 CTTACCATAA
** * * *
67074441 AAGGGCAAAACAACCATTTTACCATATAAGGGAAAAACAGTCATTTTGCCTCAT
1 AAGGGCAAAACAGTCATTTTACC-TATAAGGGAAAAACAATCATTTTACCCCAT
*
67074495 AAGGGCAATACAGTCATTTTACCTATAAGGG-AAAACAATCATTTTACCCCAT
1 AAGGGCAAAACAGTCATTTTACCTATAAGGGAAAAACAATCATTTTACCCCAT
* *
67074547 AAGGGCAAAACAGTCATTTTACCCCATAAGGGCAAAACAATCATTTTA
1 AAGGGCAAAACAGTCATTTTA-CCTATAAGGGAAAAACAATCATTTTA
67074595 TCGATTAAGG
Statistics
Matches: 90, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
52 38 0.42
53 17 0.19
54 35 0.39
ACGTcount: A:0.40, C:0.21, G:0.14, T:0.25
Consensus pattern (53 bp):
AAGGGCAAAACAGTCATTTTACCTATAAGGGAAAAACAATCATTTTACCCCAT
Found at i:67077891 original size:18 final size:17
Alignment explanation
Indices: 67077868--67077904 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 17
67077858 CTTGGCCCAT
67077868 TGCAGTAACAGTAAACAG
1 TGCAGTAACAGTAAA-AG
67077886 TGCAGTAACAGTAAAAG
1 TGCAGTAACAGTAAAAG
67077903 TG
1 TG
67077905 TAATAATAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 4 0.21
18 15 0.79
ACGTcount: A:0.43, C:0.14, G:0.24, T:0.19
Consensus pattern (17 bp):
TGCAGTAACAGTAAAAG
Done.