Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 208 of 349
Found at i:67078303 original size:27 final size:27
Alignment explanation
Indices: 67078197--67078319 Score: 120
Period size: 27 Copynumber: 4.6 Consensus size: 27
67078187 ACATAGAGGT
* * * * *
67078197 AAAACAATCATCTTACCATAAAAGGGC
1 AAAACAGTCATTTTACCACATAAGGGA
**
67078224 AAAACAACCATTTTACCACATAAGGGA
1 AAAACAGTCATTTTACCACATAAGGGA
* * * *
67078251 AAAATAGTCATTTTTCCTCATAAGGGC
1 AAAACAGTCATTTTACCACATAAGGGA
* *
67078278 AAAACAGTCATTTTACCCCATTAGGGA
1 AAAACAGTCATTTTACCACATAAGGGA
*
67078305 AAAATAGTCATTTTA
1 AAAACAGTCATTTTA
67078320 TCAATTAAGG
Statistics
Matches: 79, Mismatches: 17, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 79 1.00
ACGTcount: A:0.42, C:0.20, G:0.12, T:0.26
Consensus pattern (27 bp):
AAAACAGTCATTTTACCACATAAGGGA
Found at i:67078330 original size:27 final size:26
Alignment explanation
Indices: 67078244--67078330 Score: 79
Period size: 27 Copynumber: 3.2 Consensus size: 26
67078234 TTTTACCACA
*
67078244 TAAGGGAAAAATAGTCATTTT-TCCT
1 TAAGGGAAAAATAGTCATTTTATCAT
* * *
67078269 CATAAGGGCAAAACAGTCATTTTACCCCAT
1 --TAAGGGAAAAATAGTCATTTTA--TCAT
67078299 T-AGGGAAAAATAGTCATTTTATCAAT
1 TAAGGGAAAAATAGTCATTTTATC-AT
67078325 TAAGGG
1 TAAGGG
67078331 TCCAGGTACG
Statistics
Matches: 48, Mismatches: 7, Indels: 10
0.74 0.11 0.15
Matches are distributed among these distances:
25 1 0.02
26 3 0.06
27 41 0.85
28 1 0.02
30 2 0.04
ACGTcount: A:0.38, C:0.15, G:0.17, T:0.30
Consensus pattern (26 bp):
TAAGGGAAAAATAGTCATTTTATCAT
Found at i:67078330 original size:54 final size:53
Alignment explanation
Indices: 67078213--67078318 Score: 149
Period size: 54 Copynumber: 2.0 Consensus size: 53
67078203 ATCATCTTAC
*
67078213 CATAAAAGGGCAAAACAACCATTTTACCACATAAGGGAAAAATAGTCATTTTT
1 CATATAAGGGCAAAACAACCATTTTACCACATAAGGGAAAAATAGTCATTTTT
* ** * *
67078266 CCTCATAAGGGCAAAACAGTCATTTTACCCCATTAGGGAAAAATAGTCATTTT
1 CAT-ATAAGGGCAAAACAACCATTTTACCACATAAGGGAAAAATAGTCATTTT
67078319 ATCAATTAAG
Statistics
Matches: 46, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
53 2 0.04
54 44 0.96
ACGTcount: A:0.41, C:0.19, G:0.14, T:0.26
Consensus pattern (53 bp):
CATATAAGGGCAAAACAACCATTTTACCACATAAGGGAAAAATAGTCATTTTT
Found at i:67079726 original size:27 final size:27
Alignment explanation
Indices: 67079691--67079805 Score: 124
Period size: 27 Copynumber: 4.3 Consensus size: 27
67079681 GGTAAAGCAA
* * *
67079691 TCATCTTACCATAAAAGGGCAAAACAA
1 TCATTTTACCATATAAGGGCAAAACAG
* * *
67079718 CCATTTTACCACATAAGGGAAAAACAG
1 TCATTTTACCATATAAGGGCAAAACAG
*
67079745 TCATTTTACC-TCATAAGGGCAAACCAG
1 TCATTTTACCAT-ATAAGGGCAAAACAG
* * *
67079772 TCATTTTACCCTACAAGGGCAAAATAG
1 TCATTTTACCATATAAGGGCAAAACAG
67079799 TCATTTT
1 TCATTTT
67079806 TTCAATTAAG
Statistics
Matches: 73, Mismatches: 13, Indels: 4
0.81 0.14 0.04
Matches are distributed among these distances:
27 72 0.99
28 1 0.01
ACGTcount: A:0.39, C:0.23, G:0.13, T:0.25
Consensus pattern (27 bp):
TCATTTTACCATATAAGGGCAAAACAG
Found at i:67089664 original size:29 final size:29
Alignment explanation
Indices: 67089622--67089679 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
67089612 TTGTCGTCGC
67089622 CTACACCTAGTTTTTTCATCTCTTTCTTT
1 CTACACCTAGTTTTTTCATCTCTTTCTTT
67089651 CTACACCTAGTTTTTTCATCTCTTTCTTT
1 CTACACCTAGTTTTTTCATCTCTTTCTTT
67089680 TTTTCTTTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.14, C:0.28, G:0.03, T:0.55
Consensus pattern (29 bp):
CTACACCTAGTTTTTTCATCTCTTTCTTT
Found at i:67095968 original size:79 final size:81
Alignment explanation
Indices: 67095834--67096016 Score: 220
Period size: 79 Copynumber: 2.3 Consensus size: 81
67095824 TGAATGATGT
67095834 CCGGGCTAAGTCCCGAAGG--TTTGTGCTAAGTGACAATATCCGGACTAAGATCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACAATATCCGGACTAAGATCCGAAGGCATTT
*
67095897 GTGCGAGA-TACTAATTA
66 GTGCGA-ATTACT-ATAA
* * **
67095914 -CGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAA-ATCCGGGTTAAG-TCCCGAAGGCAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGAC-AATATCCGGACTAAGAT-CCGAAGGCAT
67095974 TTGTGCGAATTACTATAA
64 TTGTGCGAATTACTATAA
*
67095992 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
67096017 AACGAGGAGC
Statistics
Matches: 90, Mismatches: 6, Indels: 14
0.82 0.05 0.13
Matches are distributed among these distances:
78 13 0.14
79 54 0.60
80 23 0.26
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (81 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACAATATCCGGACTAAGATCCGAAGGCATTT
GTGCGAATTACTATAA
Found at i:67095978 original size:40 final size:40
Alignment explanation
Indices: 67095833--67096016 Score: 209
Period size: 40 Copynumber: 4.7 Consensus size: 40
67095823 TTGAATGATG
* *
67095833 TCCGGGCTAAGTCCCGAAGG--TTTGTGCTAAGTGAC-AATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAA-A
* * *
67095872 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
67095912 TACGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
67095951 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
67095992 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
67096017 AACGAGGAGC
Statistics
Matches: 124, Mismatches: 14, Indels: 13
0.82 0.09 0.09
Matches are distributed among these distances:
39 51 0.41
40 62 0.50
41 11 0.09
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:67096038 original size:79 final size:79
Alignment explanation
Indices: 67095885--67096049 Score: 194
Period size: 79 Copynumber: 2.1 Consensus size: 79
67095875 GGACTAAGAT
* ** *
67095885 CCGAAGGCATTTGTGCGAGATACTAATTACGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATAACGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAA
*
67095950 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
*
67095964 CCGAAGGCATTTGTGCGA-ATTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAG
1 CCGAAGGCATTTGTGCGAGA-TACTAATAA-CGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-
* *
67096026 CTATATCC-GGTTAAATT
62 CTAAATCCGGGTTAAATC
67096043 CCGAAGG
1 CCGAAGG
67096050 TACGTGATTT
Statistics
Matches: 74, Mismatches: 8, Indels: 8
0.82 0.09 0.09
Matches are distributed among these distances:
78 4 0.05
79 45 0.61
80 25 0.34
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATAACGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAA
ATCCGGGTTAAATC
Found at i:67097531 original size:46 final size:46
Alignment explanation
Indices: 67097373--67097540 Score: 198
Period size: 46 Copynumber: 3.6 Consensus size: 46
67097363 GGGTGTTACA
* *
67097373 CGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACT
1 CGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACT
* * * *
67097419 CGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCATCCGAACT
1 CGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--ACGC--CCGAACT
* * *
67097466 CGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACGCCCGAGCT
1 CGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACT
67097512 CGTTGAGTTGAGTCCGAGTTCACTTATGG
1 CGTTGAGTTGAGTCCGAGTTCACTTATGG
67097541 GCGGGTTACA
Statistics
Matches: 103, Mismatches: 12, Indels: 14
0.80 0.09 0.11
Matches are distributed among these distances:
43 6 0.06
45 4 0.04
46 55 0.53
47 28 0.27
48 5 0.05
50 5 0.05
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
CGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACT
Found at i:67102197 original size:21 final size:21
Alignment explanation
Indices: 67102172--67102222 Score: 75
Period size: 21 Copynumber: 2.4 Consensus size: 21
67102162 ATTTTGTTAT
*
67102172 ACATGATATGACATGATATGC
1 ACATGATATGACATGAGATGC
**
67102193 ACATGATATGTTATGAGATGC
1 ACATGATATGACATGAGATGC
67102214 ACATGATAT
1 ACATGATAT
67102223 ACTCATTATA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.37, C:0.12, G:0.20, T:0.31
Consensus pattern (21 bp):
ACATGATATGACATGAGATGC
Found at i:67102198 original size:11 final size:11
Alignment explanation
Indices: 67102172--67102236 Score: 62
Period size: 11 Copynumber: 6.1 Consensus size: 11
67102162 ATTTTGTTAT
67102172 ACATGATATG-
1 ACATGATATGC
67102182 ACATGATATGC
1 ACATGATATGC
67102193 ACATGATATG-
1 ACATGATATGC
** *
67102203 TTATGAGATGC
1 ACATGATATGC
*
67102214 ACATGATATAC
1 ACATGATATGC
* *
67102225 TCATTATATGC
1 ACATGATATGC
67102236 A
1 A
67102237 TGGGTTGGGT
Statistics
Matches: 42, Mismatches: 11, Indels: 3
0.75 0.20 0.05
Matches are distributed among these distances:
10 17 0.40
11 25 0.60
ACGTcount: A:0.37, C:0.14, G:0.17, T:0.32
Consensus pattern (11 bp):
ACATGATATGC
Found at i:67102234 original size:32 final size:31
Alignment explanation
Indices: 67102174--67102234 Score: 77
Period size: 32 Copynumber: 1.9 Consensus size: 31
67102164 TTTGTTATAC
* *
67102174 ATGATATGACATGATATGCACATGATATGTT
1 ATGAGATGACATGATATACACATGATATGTT
* *
67102205 ATGAGATGCACATGATATACTCATTATATG
1 ATGAGATG-ACATGATATACACATGATATG
67102235 CATGGGTTGG
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
31 7 0.28
32 18 0.72
ACGTcount: A:0.36, C:0.11, G:0.18, T:0.34
Consensus pattern (31 bp):
ATGAGATGACATGATATACACATGATATGTT
Found at i:67102327 original size:24 final size:24
Alignment explanation
Indices: 67102270--67102341 Score: 76
Period size: 25 Copynumber: 3.0 Consensus size: 24
67102260 AGGAAGTGCA
67102270 AAAAG-GGCTTTGCCCCAGTTTATC
1 AAAAGAGGCTTTGCCCCAG-TTATC
*
67102294 AAAA-AGGGCTTTGCCCCAGTTATT
1 AAAAGA-GGCTTTGCCCCAGTTATC
**
67102318 AAAAGAGGCTAGGCCTCCAGTTAT
1 AAAAGAGGCTTTGCC-CCAGTTAT
67102342 GATAAAGTAG
Statistics
Matches: 41, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
24 19 0.46
25 22 0.54
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.26
Consensus pattern (24 bp):
AAAAGAGGCTTTGCCCCAGTTATC
Found at i:67102600 original size:30 final size:31
Alignment explanation
Indices: 67102533--67102615 Score: 116
Period size: 31 Copynumber: 2.7 Consensus size: 31
67102523 CGCTTACAGT
* *
67102533 AAAGGCTTCGGCCTAGTGATATGAATTTTGA
1 AAAGGCTTCGGCCCAGTGATATGAATTATGA
*
67102564 AAAGGCTTCGGCCCAGTGTTATGAATTATG-
1 AAAGGCTTCGGCCCAGTGATATGAATTATGA
*
67102594 AAAGGCTTCAGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
67102616 TTGAGACTGA
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
29 4 0.09
30 16 0.34
31 27 0.57
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGAATTATGA
Found at i:67104815 original size:39 final size:40
Alignment explanation
Indices: 67104720--67104981 Score: 310
Period size: 39 Copynumber: 6.7 Consensus size: 40
67104710 TTGAATGATG
*
67104720 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
67104758 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
67104799 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
67104838 TTCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
67104877 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
67104916 TCCAGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* * *
67104955 AACCAGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
67104982 AACGAGGAGC
Statistics
Matches: 200, Mismatches: 14, Indels: 17
0.87 0.06 0.07
Matches are distributed among these distances:
39 129 0.64
40 59 0.29
41 11 0.05
42 1 0.00
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:67105004 original size:79 final size:79
Alignment explanation
Indices: 67104772--67105014 Score: 246
Period size: 78 Copynumber: 3.1 Consensus size: 79
67104762 GGACTAAGAT
* * **
67104772 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGAT-ACTA
1 CCGAAGGCATTTGTGCGAGATACTAATACCAGGCTAAGCCCGAAGGCATTTGAACGAG-TGACTA
* * * *
67104836 ATTTCGGGCTAAG-C
65 AATCCAGGTTAAGTC
* * ** *
67104850 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCAGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAA
67104915 ATCCAGGTTAAGTC
66 ATCCAGGTTAAGTC
*
67104929 CCGAAGGCATTTGTGCGA-ATTACT-ATAACCAGGCTATGTCCCGAAGGCATTTGAACGAG-GAG
1 CCGAAGGCATTTGTGCGAGA-TACTAAT-ACCAGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-
* * *
67104991 CTATATCCA-GTTAAATT
62 CTAAATCCAGGTTAAGTC
67105008 CCGAAGG
1 CCGAAGG
67105015 TACGTGATTT
Statistics
Matches: 146, Mismatches: 13, Indels: 11
0.86 0.08 0.06
Matches are distributed among these distances:
77 1 0.01
78 74 0.51
79 45 0.31
80 26 0.18
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCAGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAA
ATCCAGGTTAAGTC
Found at i:67113307 original size:11 final size:10
Alignment explanation
Indices: 67113275--67113311 Score: 58
Period size: 10 Copynumber: 3.7 Consensus size: 10
67113265 CATGAGATTT
67113275 TGATAT-ACA
1 TGATATGACA
67113284 TGATATGACA
1 TGATATGACA
67113294 TGATATGCACA
1 TGATATG-ACA
67113305 TGATATG
1 TGATATG
67113312 TTATCAGATG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
9 6 0.23
10 10 0.38
11 10 0.38
ACGTcount: A:0.38, C:0.11, G:0.19, T:0.32
Consensus pattern (10 bp):
TGATATGACA
Found at i:67113307 original size:21 final size:21
Alignment explanation
Indices: 67113281--67113331 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
67113271 ATTTTGATAT
* *
67113281 ACATGATATGACATGATATGC
1 ACATGATATGACATCAGATGC
**
67113302 ACATGATATGTTATCAGATGC
1 ACATGATATGACATCAGATGC
67113323 ACATGATAT
1 ACATGATAT
67113332 ACTCACTATA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (21 bp):
ACATGATATGACATCAGATGC
Found at i:67113436 original size:24 final size:24
Alignment explanation
Indices: 67113379--67113450 Score: 76
Period size: 25 Copynumber: 3.0 Consensus size: 24
67113369 AGGAAGTGCA
67113379 AAAAG-GGCTTTGCCCCAGTTTATC
1 AAAAGAGGCTTTGCCCCAG-TTATC
*
67113403 AAAA-AGGGCTTTGCCCCAGTTATT
1 AAAAGA-GGCTTTGCCCCAGTTATC
**
67113427 AAAAGAGGCTAGGCCTCCAGTTAT
1 AAAAGAGGCTTTGCC-CCAGTTAT
67113451 GATAAAGCAG
Statistics
Matches: 41, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
24 19 0.46
25 22 0.54
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.26
Consensus pattern (24 bp):
AAAAGAGGCTTTGCCCCAGTTATC
Found at i:67113709 original size:30 final size:31
Alignment explanation
Indices: 67113642--67113724 Score: 107
Period size: 31 Copynumber: 2.7 Consensus size: 31
67113632 CGCTTACAGT
* *
67113642 AAAGGCTTCGGCCTAGTGATATGAATTTTGA
1 AAAGGCTTCGGCCCAGTGATATGAATTATGA
*
67113673 AAAGGCTTCGGCCCAGTGTTATGAATTATG-
1 AAAGGCTTCGGCCCAGTGATATGAATTATGA
* *
67113703 AAAGGCTTCAGTCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
67113725 TTGAGACTGA
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
29 4 0.09
30 15 0.33
31 27 0.59
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.30
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGAATTATGA
Found at i:67125429 original size:29 final size:28
Alignment explanation
Indices: 67125367--67125431 Score: 76
Period size: 29 Copynumber: 2.3 Consensus size: 28
67125357 TAAAAAAATA
*
67125367 ATTAATTTCATTTTCATTTTTAATAATG
1 ATTAAATTCATTTTCATTTTTAATAATG
* * **
67125395 AATAAATTCAATTTTCATTTTTTATTTTG
1 ATTAAATTC-ATTTTCATTTTTAATAATG
67125424 ATTAAATT
1 ATTAAATT
67125432 AGTTAAATGT
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
28 7 0.23
29 23 0.77
ACGTcount: A:0.34, C:0.06, G:0.03, T:0.57
Consensus pattern (28 bp):
ATTAAATTCATTTTCATTTTTAATAATG
Found at i:67130703 original size:47 final size:47
Alignment explanation
Indices: 67130649--67130842 Score: 298
Period size: 47 Copynumber: 4.1 Consensus size: 47
67130639 TTAGGATTTT
** * *
67130649 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
67130696 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
67130743 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * *
67130790 ATGTGGTGAATGTGAACATGCATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
67130837 ATGTGA
1 ATGTGA
67130843 AATATGTATG
Statistics
Matches: 134, Mismatches: 13, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 134 1.00
ACGTcount: A:0.32, C:0.11, G:0.30, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:67130749 original size:22 final size:22
Alignment explanation
Indices: 67130678--67130749 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
67130668 GTATATATGA
67130678 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
* * *
67130700 GATGAATG-TGAACAT-GCATATATGT
1 GAT-AAGGCCG-A-ATGGC-CA-ATGT
67130725 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
67130747 GAT
1 GAT
67130750 GAATGTGAGC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 11 0.30
23 9 0.24
24 9 0.24
25 8 0.22
ACGTcount: A:0.33, C:0.14, G:0.29, T:0.24
Consensus pattern (22 bp):
GATAAGGCCGAATGGCCAATGT
Found at i:67130798 original size:25 final size:25
Alignment explanation
Indices: 67130723--67130798 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 25
67130713 ATGCATATAT
67130723 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
* * * *
67130748 ATGA-ATGTG-AGCAT-G-CATATGT-
1 GTGATAAG-GCCGAATGGCCA-ATGTG
67130770 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
67130795 GTGA
1 GTGA
67130799 ATGTGAACAT
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 6 0.17
23 10 0.28
24 10 0.28
25 10 0.28
ACGTcount: A:0.29, C:0.13, G:0.34, T:0.24
Consensus pattern (25 bp):
GTGATAAGGCCGAATGGCCAATGTG
Found at i:67130875 original size:48 final size:48
Alignment explanation
Indices: 67130812--67130946 Score: 252
Period size: 48 Copynumber: 2.8 Consensus size: 48
67130802 TGAACATGCA
67130812 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
67130860 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* *
67130908 TATATGTGGTAAAACCGAATGGCTAGTGTGAAATATGTA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
67130947 GGCGATGTGC
Statistics
Matches: 85, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 85 1.00
ACGTcount: A:0.36, C:0.07, G:0.27, T:0.31
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
Found at i:67131238 original size:37 final size:37
Alignment explanation
Indices: 67131095--67131237 Score: 241
Period size: 37 Copynumber: 3.9 Consensus size: 37
67131085 AAATATATTA
*
67131095 CGGGTAAGACCCGATGACTACGTGTGGTGATTATGTC
1 CGGGTAAGACCCGATGACTACGTGTGGAGATTATGTC
67131132 CGGGTAAGACCCGATGACTACGTGTGGAGATTATGTC
1 CGGGTAAGACCCGATGACTACGTGTGGAGATTATGTC
*
67131169 CGGGTAAGACCCGATGACTACGTGTGGAGATTTTGTC
1 CGGGTAAGACCCGATGACTACGTGTGGAGATTATGTC
* * *
67131206 CGGGTAAGACTCGATAACTTCGTGTGGAGATT
1 CGGGTAAGACCCGATGACTACGTGTGGAGATT
67131238 TCGTCTGAGC
Statistics
Matches: 101, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 101 1.00
ACGTcount: A:0.23, C:0.18, G:0.32, T:0.27
Consensus pattern (37 bp):
CGGGTAAGACCCGATGACTACGTGTGGAGATTATGTC
Found at i:67132589 original size:27 final size:27
Alignment explanation
Indices: 67132551--67132603 Score: 97
Period size: 27 Copynumber: 2.0 Consensus size: 27
67132541 GTTGTACATA
*
67132551 GAGGGGTTGCTATGTGCTGATTCCCCC
1 GAGGGGTTGCTAAGTGCTGATTCCCCC
67132578 GAGGGGTTGCTAAGTGCTGATTCCCC
1 GAGGGGTTGCTAAGTGCTGATTCCCC
67132604 GATTCATTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.13, C:0.25, G:0.34, T:0.28
Consensus pattern (27 bp):
GAGGGGTTGCTAAGTGCTGATTCCCCC
Found at i:67132672 original size:77 final size:76
Alignment explanation
Indices: 67132580--67132756 Score: 282
Period size: 77 Copynumber: 2.3 Consensus size: 76
67132570 ATTCCCCCGA
* * *
67132580 GGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTATGTACGATATCCACCGTATCTTT
1 GGGGTTGCTATGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTACGATATCCACCGTATCTCT
**
67132645 GAAATGTGAAAG
66 GAAAT-AAAAAG
* *
67132657 GGGGTTGCTATGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCTCT
1 GGGGTTGCTATGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTACGATATCCACCGTATCTCT
67132722 GAAATAAAAAG
66 GAAATAAAAAG
67132733 GGGGTTGCTATGTGCTGATTCCCC
1 GGGGTTGCTATGTGCTGATTCCCC
67132757 CAAGGGGTTG
Statistics
Matches: 93, Mismatches: 7, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
76 28 0.30
77 65 0.70
ACGTcount: A:0.20, C:0.20, G:0.28, T:0.32
Consensus pattern (76 bp):
GGGGTTGCTATGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTACGATATCCACCGTATCTCT
GAAATAAAAAG
Found at i:67134974 original size:16 final size:16
Alignment explanation
Indices: 67134953--67134983 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
67134943 CACACATTAT
*
67134953 AAATGCTGAAAAGCCG
1 AAATGCCGAAAAGCCG
67134969 AAATGCCGAAAAGCC
1 AAATGCCGAAAAGCC
67134984 AAAAGTTTGG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.45, C:0.23, G:0.23, T:0.10
Consensus pattern (16 bp):
AAATGCCGAAAAGCCG
Found at i:67135247 original size:29 final size:29
Alignment explanation
Indices: 67135210--67135286 Score: 100
Period size: 29 Copynumber: 2.7 Consensus size: 29
67135200 TGAATATGAC
* *
67135210 TGGGCCTAACGGGCCATATAAATGTGATT
1 TGGGCCTAATGGGCCATATAAAGGTGATT
* * *
67135239 TGGTCCTAATGAGCCATATATAGGTGATT
1 TGGGCCTAATGGGCCATATAAAGGTGATT
*
67135268 TGGGCCTAATGGGCTATAT
1 TGGGCCTAATGGGCCATAT
67135287 GAATACGATT
Statistics
Matches: 40, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
29 40 1.00
ACGTcount: A:0.26, C:0.16, G:0.27, T:0.31
Consensus pattern (29 bp):
TGGGCCTAATGGGCCATATAAAGGTGATT
Found at i:67140418 original size:17 final size:18
Alignment explanation
Indices: 67140385--67140419 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
67140375 TTTTAAGAAG
67140385 GGTTTTCAATGAAAACAC
1 GGTTTTCAATGAAAACAC
*
67140403 GGTTTTCACT-AAAACAC
1 GGTTTTCAATGAAAACAC
67140420 TTTAATGTGA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.37, C:0.20, G:0.14, T:0.29
Consensus pattern (18 bp):
GGTTTTCAATGAAAACAC
Found at i:67141226 original size:28 final size:28
Alignment explanation
Indices: 67141186--67141300 Score: 135
Period size: 28 Copynumber: 4.1 Consensus size: 28
67141176 AAACACGACA
*
67141186 GAAAAGAATAGCCTTTTTGGAAAACTCT
1 GAAAAGAATAGCCTTTTTGGCAAACTCT
*
67141214 GAAAAGAATAGCCTTTTTGGCGAACTCT
1 GAAAAGAATAGCCTTTTTGGCAAACTCT
* *
67141242 -AAAAGGAATAGCCTTTATGGCAAACTCA
1 GAAAA-GAATAGCCTTTTTGGCAAACTCT
* * *
67141270 GAAAAGGAAT-GTCTTTGTGGCGAACTCT
1 GAAAA-GAATAGCCTTTTTGGCAAACTCT
67141298 GAA
1 GAA
67141301 TAGATCAGCT
Statistics
Matches: 76, Mismatches: 9, Indels: 4
0.85 0.10 0.04
Matches are distributed among these distances:
27 4 0.05
28 63 0.83
29 9 0.12
ACGTcount: A:0.37, C:0.16, G:0.22, T:0.26
Consensus pattern (28 bp):
GAAAAGAATAGCCTTTTTGGCAAACTCT
Found at i:67141274 original size:56 final size:55
Alignment explanation
Indices: 67141187--67141297 Score: 152
Period size: 56 Copynumber: 2.0 Consensus size: 55
67141177 AACACGACAG
* * *
67141187 AAAAGAATAGCCTTTTTGGAAAACTCTGAAAA-GAATAGCCTTTTTGGCGAACTCT
1 AAAAGAATAGCCTTTATGGAAAACTCAGAAAAGGAAT-GCCTTTGTGGCGAACTCT
* *
67141242 AAAAGGAATAGCCTTTATGGCAAACTCAGAAAAGGAATGTCTTTGTGGCGAACTCT
1 AAAA-GAATAGCCTTTATGGAAAACTCAGAAAAGGAATGCCTTTGTGGCGAACTCT
67141298 GAATAGATCA
Statistics
Matches: 49, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
55 4 0.08
56 41 0.84
57 4 0.08
ACGTcount: A:0.36, C:0.16, G:0.21, T:0.27
Consensus pattern (55 bp):
AAAAGAATAGCCTTTATGGAAAACTCAGAAAAGGAATGCCTTTGTGGCGAACTCT
Found at i:67141651 original size:24 final size:24
Alignment explanation
Indices: 67141593--67141642 Score: 91
Period size: 24 Copynumber: 2.1 Consensus size: 24
67141583 ATGAAAACTG
67141593 AGGGTGTAATGCCCCAAAATTTTA
1 AGGGTGTAATGCCCCAAAATTTTA
*
67141617 AGGGTGTAATGCCCTAAAATTTTA
1 AGGGTGTAATGCCCCAAAATTTTA
67141641 AG
1 AG
67141643 TTTCGAATGG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.34, C:0.14, G:0.22, T:0.30
Consensus pattern (24 bp):
AGGGTGTAATGCCCCAAAATTTTA
Found at i:67144348 original size:53 final size:54
Alignment explanation
Indices: 67144279--67144485 Score: 211
Period size: 53 Copynumber: 3.8 Consensus size: 54
67144269 TTCCTTTTTA
* * * **
67144279 AACTTACCATTTCCATGTCTTGACATGGTCTTATGTGGTATCCTTGCCTTAT-G
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* * * *
67144332 AACTCACCATTGCCATGCCTTCG-CATGGTCTTACATGGGATCTTTGCCTTATAG
1 AACTTACCAATGCCATGCCTT-GACATGGTCTTACATGGTATCCTTGCCTTATAG
** * * * * *
67144386 TAGTTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCCTGCCTTATAG
1 -AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* * *
67144441 AACATACCAATGCCATGCCTTGGCATGGTCTTACTTGGTATCCTT
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTT
67144486 AAACCCTAAT
Statistics
Matches: 122, Mismatches: 28, Indels: 7
0.78 0.18 0.04
Matches are distributed among these distances:
53 43 0.35
54 38 0.31
55 41 0.34
ACGTcount: A:0.21, C:0.25, G:0.17, T:0.37
Consensus pattern (54 bp):
AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
Found at i:67144417 original size:55 final size:53
Alignment explanation
Indices: 67144291--67144485 Score: 169
Period size: 55 Copynumber: 3.6 Consensus size: 53
67144281 CTTACCATTT
** * *
67144291 CCATGTCTTGACATGGTCTTATGTGGTATCCTTGCCTTATGAACTCACCATTG
1 CCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATGAACTCACCAATG
* * ** * *
67144344 CCATGCCTTCG-CATGGTCTTACATGGGATCTTTGCCTTATAGTAGTTTATCAATG
1 CCATGTCTT-GACATGGTCTTACATGGGATCCTTGCCTTAT-G-AACTCACCAATG
*** *
67144399 CCATGTCTTGACATGGTCTTACATGATTTCCCTGCCTTATAGAACAT-ACCAATG
1 CCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTAT-GAAC-TCACCAATG
* * * *
67144453 CCATGCCTTGGCATGGTCTTACTTGGTATCCTT
1 CCATGTCTTGACATGGTCTTACATGGGATCCTT
67144486 AAACCCTAAT
Statistics
Matches: 112, Mismatches: 25, Indels: 9
0.77 0.17 0.06
Matches are distributed among these distances:
53 33 0.29
54 37 0.33
55 42 0.38
ACGTcount: A:0.20, C:0.25, G:0.18, T:0.37
Consensus pattern (53 bp):
CCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATGAACTCACCAATG
Found at i:67146288 original size:856 final size:856
Alignment explanation
Indices: 67144636--67146351 Score: 3405
Period size: 856 Copynumber: 2.0 Consensus size: 856
67144626 ACATCATTAA
67144636 TTATAAATAATAAAACGTTGCATTTATTTACCACAAACTTACCTTGATACAAAATATGATCAAAT
1 TTATAAATAATAAAACGTTGCATTTATTTACCACAAACTTACCTTGATACAAAATATGATCAAAT
67144701 ATTTTGATTTAGTCCTCAACATTTTTCTTTCCTCGGTCTAACCCTGAATTTTGTTCTTCTTGATC
66 ATTTTGATTTAGTCCTCAACATTTTTCTTTCCTCGGTCTAACCCTGAATTTTGTTCTTCTTGATC
67144766 TATAATAGCAAATTGAACTTATTTAATATTCACATTTATCAAAACAGTCCTTTGGAAAAATTACG
131 TATAATAGCAAATTGAACTTATTTAATATTCACATTTATCAAAACAGTCCTTTGGAAAAATTACG
67144831 ATTTTGCCCCTAAACTTTTGTATATTTACACTTTTGCCCCAAGGCTCAGAAATGAAACTTTATCC
196 ATTTTGCCCCTAAACTTTTGTATATTTACACTTTTGCCCCAAGGCTCAGAAATGAAACTTTATCC
* *
67144896 CTAATTCTTATGTTTTATGACATGCTGATCATTTATTTACCTGCGGCAACATCAAATTCCCACTA
261 CTAATTCTTATGTTTTATGACATGCTGATCATTTATTTACCTACGGCAACATAAAATTCCCACTA
67144961 TAACATGTACTTATGACCATTAGGTATTTTTACCGATTATGTCGTTTTACTCGTTTTTGTTTAAA
326 TAACATGTACTTATGACCATTAGGTATTTTTACCGATTATGTCGTTTTACTCGTTTTTGTTTAAA
67145026 ATCGCTTAGCTCAAGTCGTTCAACATAATTTCAAGCTTCATATTCTACCATAAAACATAAAAATA
391 ATCGCTTAGCTCAAGTCGTTCAACATAATTTCAAGCTTCATATTCTACCATAAAACATAAAAATA
67145091 AACACATTTCACCTATGGGTATTTTTCCAAATATGAACCCTAGGTTAAATTATTGCTAGAATAAG
456 AACACATTTCACCTATGGGTATTTTTCCAAATATGAACCCTAGGTTAAATTATTGCTAGAATAAG
67145156 CTAAATCAAGTTACCGGGACTTTAAAAACGTAAAGAACATTAAAAACGAGGCTTGGAATCACTTA
521 CTAAATCAAGTTACCGGGACTTTAAAAACGTAAAGAACATTAAAAACGAGGCTTGGAATCACTTA
67145221 CTATGAAGCTTGGAAGCTTGAAAAAACCCTAGCTATGAAGAACCCTTGAAATTTCAGCCTAATAA
586 CTATGAAGCTTGGAAGCTTGAAAAAACCCTAGCTATGAAGAACCCTTGAAATTTCAGCCTAATAA
67145286 AGAAGATGGGCACATTTTGCCATCTTTTTCCCTTTTTTAATCTTTTAATTACCAAAGGACTAAAA
651 AGAAGATGGGCACATTTTGCCATCTTTTTCCCTTTTTTAATCTTTTAATTACCAAAGGACTAAAA
*
67145351 TACCCTGCATTAAAACTTTACGTATTTTTATCTATGTATGTCCATTTTTGTCCATGAAAACCTAA
716 TACCCTACATTAAAACTTTACGTATTTTTATCTATGTATGTCCATTTTTGTCCATGAAAACCTAA
67145416 TGGTCTAATCACCATTTAAGGACCTTTACTTCAATTATACTCTTCAATTTAATCCTTTAGCATCT
781 TGGTCTAATCACCATTTAAGGACCTTTACTTCAATTATACTCTTCAATTTAATCCTTTAGCATCT
67145481 AAAACCCATAT
846 AAAACCCATAT
67145492 TTATAAATAATAAAACGTTGCATTTATTTACCACAAACTTACCTTGATACAAAATATGATCAAAT
1 TTATAAATAATAAAACGTTGCATTTATTTACCACAAACTTACCTTGATACAAAATATGATCAAAT
67145557 ATTTTGATTTAGTCCTCAACATTTTTCTTTCCTCGGTCTAACCCTGAATTTTGTTCTTCTTGATC
66 ATTTTGATTTAGTCCTCAACATTTTTCTTTCCTCGGTCTAACCCTGAATTTTGTTCTTCTTGATC
67145622 TATAATAGCAAATTGAACTTATTTAATATTCACATTTATCAAAACAGTCCTTTGGAAAAATTACG
131 TATAATAGCAAATTGAACTTATTTAATATTCACATTTATCAAAACAGTCCTTTGGAAAAATTACG
67145687 ATTTTGCCCCTAAACTTTTGTATATTTACACTTTTGCCCCAAGGCTCAGAAATGAAACTTTATCC
196 ATTTTGCCCCTAAACTTTTGTATATTTACACTTTTGCCCCAAGGCTCAGAAATGAAACTTTATCC
67145752 CTAATTCTTATGTTTTATGACATGCTGATCATTTATTTACCTACGGCAACATAAAATTCCCACTA
261 CTAATTCTTATGTTTTATGACATGCTGATCATTTATTTACCTACGGCAACATAAAATTCCCACTA
67145817 TAACATGTACTTATGACCATTAGGTATTTTTACCGATTATGTCGTTTTACTCGTTTTTGTTTAAA
326 TAACATGTACTTATGACCATTAGGTATTTTTACCGATTATGTCGTTTTACTCGTTTTTGTTTAAA
67145882 ATCGCTTAGCTCAAGTCGTTCAACATAATTTCAAGCTTCATATTCTACCATAAAACATAAAAATA
391 ATCGCTTAGCTCAAGTCGTTCAACATAATTTCAAGCTTCATATTCTACCATAAAACATAAAAATA
67145947 AACACATTTCACCTATGGGTATTTTTCCAAATATGAACCCTAGGTTAAATTATTGCTAGAATAAG
456 AACACATTTCACCTATGGGTATTTTTCCAAATATGAACCCTAGGTTAAATTATTGCTAGAATAAG
67146012 CTAAATCAAGTTACCGGGACTTTAAAAACGTAAAGAACATTAAAAACGAGGCTTGGAATCACTTA
521 CTAAATCAAGTTACCGGGACTTTAAAAACGTAAAGAACATTAAAAACGAGGCTTGGAATCACTTA
67146077 CTATGAAGCTTGGAAGCTTGAAAAAACCCTAGCTATGAAGAACCCTTGAAATTTCAGCCTAATAA
586 CTATGAAGCTTGGAAGCTTGAAAAAACCCTAGCTATGAAGAACCCTTGAAATTTCAGCCTAATAA
67146142 AGAAGATGGGCACATTTTGCCATCTTTTTCCCTTTTTTAATCTTTTAATTACCAAAGGACTAAAA
651 AGAAGATGGGCACATTTTGCCATCTTTTTCCCTTTTTTAATCTTTTAATTACCAAAGGACTAAAA
67146207 TACCCTACATTAAAACTTTACGTATTTTTATCTATGTATGTCCATTTTTGTCCATGAAAACCTAA
716 TACCCTACATTAAAACTTTACGTATTTTTATCTATGTATGTCCATTTTTGTCCATGAAAACCTAA
67146272 TGGTCTAATCACCATTTAAGGACCTTTACTTCAATTATACTCTTCAATTTAATCCTTTAGCATCT
781 TGGTCTAATCACCATTTAAGGACCTTTACTTCAATTATACTCTTCAATTTAATCCTTTAGCATCT
67146337 AAAACCCATAT
846 AAAACCCATAT
67146348 TTAT
1 TTAT
67146352 CAACTTTTGC
Statistics
Matches: 857, Mismatches: 3, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
856 857 1.00
ACGTcount: A:0.33, C:0.19, G:0.11, T:0.36
Consensus pattern (856 bp):
TTATAAATAATAAAACGTTGCATTTATTTACCACAAACTTACCTTGATACAAAATATGATCAAAT
ATTTTGATTTAGTCCTCAACATTTTTCTTTCCTCGGTCTAACCCTGAATTTTGTTCTTCTTGATC
TATAATAGCAAATTGAACTTATTTAATATTCACATTTATCAAAACAGTCCTTTGGAAAAATTACG
ATTTTGCCCCTAAACTTTTGTATATTTACACTTTTGCCCCAAGGCTCAGAAATGAAACTTTATCC
CTAATTCTTATGTTTTATGACATGCTGATCATTTATTTACCTACGGCAACATAAAATTCCCACTA
TAACATGTACTTATGACCATTAGGTATTTTTACCGATTATGTCGTTTTACTCGTTTTTGTTTAAA
ATCGCTTAGCTCAAGTCGTTCAACATAATTTCAAGCTTCATATTCTACCATAAAACATAAAAATA
AACACATTTCACCTATGGGTATTTTTCCAAATATGAACCCTAGGTTAAATTATTGCTAGAATAAG
CTAAATCAAGTTACCGGGACTTTAAAAACGTAAAGAACATTAAAAACGAGGCTTGGAATCACTTA
CTATGAAGCTTGGAAGCTTGAAAAAACCCTAGCTATGAAGAACCCTTGAAATTTCAGCCTAATAA
AGAAGATGGGCACATTTTGCCATCTTTTTCCCTTTTTTAATCTTTTAATTACCAAAGGACTAAAA
TACCCTACATTAAAACTTTACGTATTTTTATCTATGTATGTCCATTTTTGTCCATGAAAACCTAA
TGGTCTAATCACCATTTAAGGACCTTTACTTCAATTATACTCTTCAATTTAATCCTTTAGCATCT
AAAACCCATAT
Found at i:67150699 original size:54 final size:54
Alignment explanation
Indices: 67150565--67150748 Score: 235
Period size: 54 Copynumber: 3.4 Consensus size: 54
67150555 TACATCAAAT
* * * *
67150565 AGGGCAAAGCAGTCATCTTACCATATAAGAGCAAAATAGTCATTTTACCACAT-
1 AGGGCAAAACAGTCATTTTACCATATAAGGGAAAAATAGTCATTTTACCACATA
* * *
67150618 AGGGAAAAACAATCATTTTACCATATAAGGGAAAAATAGTCATTTTACCATATA
1 AGGGCAAAACAGTCATTTTACCATATAAGGGAAAAATAGTCATTTTACCACATA
** * * *
67150672 AAAGCGAAACAGTCATTTTACCATATAAAGGAAAAACAGTCATTTTACCACATA
1 AGGGCAAAACAGTCATTTTACCATATAAGGGAAAAATAGTCATTTTACCACATA
* *
67150726 TGGGCAAAACAGTTATTTTACCA
1 AGGGCAAAACAGTCATTTTACCA
67150749 CATAGGGGGT
Statistics
Matches: 110, Mismatches: 20, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
53 46 0.42
54 64 0.58
ACGTcount: A:0.43, C:0.17, G:0.14, T:0.26
Consensus pattern (54 bp):
AGGGCAAAACAGTCATTTTACCATATAAGGGAAAAATAGTCATTTTACCACATA
Found at i:67150752 original size:27 final size:27
Alignment explanation
Indices: 67150565--67150748 Score: 208
Period size: 27 Copynumber: 6.9 Consensus size: 27
67150555 TACATCAAAT
* *
67150565 AGGGCAAAGCAGTCATCTTACCATATA
1 AGGGCAAAACAGTCATTTTACCATATA
* * *
67150592 AGAGCAAAATAGTCATTTTACCACAT-
1 AGGGCAAAACAGTCATTTTACCATATA
* *
67150618 AGGGAAAAACAATCATTTTACCATATA
1 AGGGCAAAACAGTCATTTTACCATATA
* *
67150645 AGGGAAAAATAGTCATTTTACCATATA
1 AGGGCAAAACAGTCATTTTACCATATA
** *
67150672 AAAGCGAAACAGTCATTTTACCATATA
1 AGGGCAAAACAGTCATTTTACCATATA
* * *
67150699 AAGGAAAAACAGTCATTTTACCACATA
1 AGGGCAAAACAGTCATTTTACCATATA
* *
67150726 TGGGCAAAACAGTTATTTTACCA
1 AGGGCAAAACAGTCATTTTACCA
67150749 CATAGGGGGT
Statistics
Matches: 131, Mismatches: 25, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
26 21 0.16
27 110 0.84
ACGTcount: A:0.43, C:0.17, G:0.14, T:0.26
Consensus pattern (27 bp):
AGGGCAAAACAGTCATTTTACCATATA
Found at i:67155174 original size:28 final size:28
Alignment explanation
Indices: 67155126--67155245 Score: 125
Period size: 28 Copynumber: 4.2 Consensus size: 28
67155116 AAGTCTACAA
* * *
67155126 ACATGCATATGGCTCACTAGGCCCAATC
1 ACATTCATATGGCCCATTAGGCCCAATC
*
67155154 TCATTCATATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCC-AATC
* * * *
67155183 ACATTCATATAGCACA-TCGGCCTTAATC
1 ACATTCATATGGCCCATTAGGCC-CAATC
* *
67155211 ACATTCATATGGCCCATCAGCCCCAATC
1 ACATTCATATGGCCCATTAGGCCCAATC
67155239 ACATTCA
1 ACATTCA
67155246 CATTCATGCA
Statistics
Matches: 74, Mismatches: 15, Indels: 6
0.78 0.16 0.06
Matches are distributed among these distances:
28 54 0.73
29 20 0.27
ACGTcount: A:0.30, C:0.33, G:0.12, T:0.25
Consensus pattern (28 bp):
ACATTCATATGGCCCATTAGGCCCAATC
Found at i:67163138 original size:46 final size:47
Alignment explanation
Indices: 67163032--67163153 Score: 147
Period size: 46 Copynumber: 2.6 Consensus size: 47
67163022 TGTCTTCGAC
** * *
67163032 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATATATCTAAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCC--A-ATATATCTAAT
* *
67163082 ATGGGCTTACATGGCTCATTCCTGTCTCCAAAGCC-ATATATCTGAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATCTAAT
*
67163128 ATGGACTTACATGGCTCATTTCTGTC
1 ATGGACTTACATGGCTCATTCCTGTC
67163154 CTATCCTGTC
Statistics
Matches: 64, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
46 34 0.53
50 30 0.47
ACGTcount: A:0.26, C:0.23, G:0.15, T:0.36
Consensus pattern (47 bp):
ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATCTAAT
Found at i:67163749 original size:28 final size:28
Alignment explanation
Indices: 67163709--67163764 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
67163699 TAAACACTTT
67163709 TCACCTATGGGTATTTTTCCAAATATGA
1 TCACCTATGGGTATTTTTCCAAATATGA
67163737 TCACCTATGGGTATTTTTCCAAATATGA
1 TCACCTATGGGTATTTTTCCAAATATGA
67163765 ACCCTAACTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.29, C:0.18, G:0.14, T:0.39
Consensus pattern (28 bp):
TCACCTATGGGTATTTTTCCAAATATGA
Found at i:67166032 original size:57 final size:56
Alignment explanation
Indices: 67165968--67166083 Score: 137
Period size: 57 Copynumber: 2.1 Consensus size: 56
67165958 ACATACATGT
*
67165968 ATATGGCCCACTAGG-CCCAGTC-TCATTCATATGGCCCATTAGGCCCAAATCACATTC
1 ATATGGCCCA-TAGGCCCCAATCAT-ATTCATATGGCCCA-TAGGCCCAAATCACATTC
* * * * *
67166025 ATATGGCCCATCGGCCCCAATCATATTCATATTGTCCATCGGCCCCAATCACATTC
1 ATATGGCCCATAGGCCCCAATCATATTCATATGGCCCATAGGCCCAAATCACATTC
67166081 ATA
1 ATA
67166084 GTCATGCAAT
Statistics
Matches: 51, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
56 22 0.43
57 28 0.55
58 1 0.02
ACGTcount: A:0.27, C:0.34, G:0.14, T:0.26
Consensus pattern (56 bp):
ATATGGCCCATAGGCCCCAATCATATTCATATGGCCCATAGGCCCAAATCACATTC
Found at i:67166033 original size:29 final size:28
Alignment explanation
Indices: 67165968--67166083 Score: 135
Period size: 28 Copynumber: 4.1 Consensus size: 28
67165958 ACATACATGT
* *
67165968 ATATGGCCCACTAGG-CCCAGTCTCATTC
1 ATATGGCCCA-TAGGCCCCAATCACATTC
*
67165996 ATATGGCCCATTAGGCCCAAATCACATTC
1 ATATGGCCCA-TAGGCCCCAATCACATTC
* *
67166025 ATATGGCCCATCGGCCCCAATCATATTC
1 ATATGGCCCATAGGCCCCAATCACATTC
* * *
67166053 ATATTGTCCATCGGCCCCAATCACATTC
1 ATATGGCCCATAGGCCCCAATCACATTC
67166081 ATA
1 ATA
67166084 GTCATGCAAT
Statistics
Matches: 77, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
28 57 0.74
29 20 0.26
ACGTcount: A:0.27, C:0.34, G:0.14, T:0.26
Consensus pattern (28 bp):
ATATGGCCCATAGGCCCCAATCACATTC
Found at i:67166311 original size:16 final size:16
Alignment explanation
Indices: 67166290--67166321 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
67166280 CCAAACTTCT
67166290 AGCTTTTCGGCATTTC
1 AGCTTTTCGGCATTTC
*
67166306 AGCTTTTCGGTATTTC
1 AGCTTTTCGGCATTTC
67166322 GAGATTTTGC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.12, C:0.22, G:0.19, T:0.47
Consensus pattern (16 bp):
AGCTTTTCGGCATTTC
Found at i:67169491 original size:80 final size:80
Alignment explanation
Indices: 67169355--67169638 Score: 353
Period size: 80 Copynumber: 3.6 Consensus size: 80
67169345 TCGAATGATG
* * * *
67169355 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATATCCGGACTAAGGTCCGAAGGCATT
*
67169419 TGTGCGAGTTATTAAA
65 TGTGCGAGTTACTAAA
* *
67169435 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTAATATATCCGGACTAAGGTCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGACTAAGGTCCGAAGGCATTT
*
67169500 GTGCGAGTTACTAAT
66 GTGCGAGTTACTAAA
* * * **
67169515 TCCGGGCTAAG-CCCAAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAA-GTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGACTAAGGT-CCGAAGGCATT
67169578 TGTGCGAGTTACTATAA
65 TGTGCGAGTTACTA-AA
* **
67169595 -CCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATATCCGG
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGG
67169639 TTAAATTCCG
Statistics
Matches: 177, Mismatches: 22, Indels: 10
0.85 0.11 0.05
Matches are distributed among these distances:
78 2 0.01
79 68 0.38
80 100 0.56
81 7 0.04
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGACTAAGGTCCGAAGGCATTT
GTGCGAGTTACTAAA
Found at i:67169626 original size:40 final size:39
Alignment explanation
Indices: 67169356--67169619 Score: 284
Period size: 40 Copynumber: 6.6 Consensus size: 39
67169346 CGAATGATGT
* * * *
67169356 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-AA
* *
67169396 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTATTAAA
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
67169435 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTAATATAT
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
67169476 CCGGACTAAGGT-CCGAAGGCATTTGTGCGAGTTACTAATT
1 CCGGGCTAA-GTCCCGAAGGCATTTGTGCGAGTTACTAA-A
* *
67169516 CCGGGCTAAG-CCCAAAGGCATTGGTGCGAGTTACTAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
67169554 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
67169595 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
67169620 AACGAGTAGC
Statistics
Matches: 191, Mismatches: 22, Indels: 22
0.81 0.09 0.09
Matches are distributed among these distances:
39 37 0.19
40 141 0.74
41 13 0.07
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:67169626 original size:119 final size:119
Alignment explanation
Indices: 67169411--67169626 Score: 344
Period size: 119 Copynumber: 1.8 Consensus size: 119
67169401 CTAAGATCCG
* * *
67169411 AAGGCATTTGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTAATATAT
1 AAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTAATATAA
**
67169476 CCGGACTAAGGTCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCA
66 CCGGACTAAGGTCCGAAGGCATTTGAACGAGTTACTAATTCCGGGCTAAGCCCA
*
67169530 AAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 AAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTAATATAA
* *
67169595 CCGGGCT-ATGTCCCGAAGGCATTTGAACGAGT
66 CCGGACTAAGGT-CCGAAGGCATTTGAACGAGT
67169627 AGCTATATCC
Statistics
Matches: 88, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
118 3 0.03
119 85 0.97
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.27
Consensus pattern (119 bp):
AAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTAATATAA
CCGGACTAAGGTCCGAAGGCATTTGAACGAGTTACTAATTCCGGGCTAAGCCCA
Found at i:67169638 original size:119 final size:120
Alignment explanation
Indices: 67169392--67169638 Score: 340
Period size: 119 Copynumber: 2.1 Consensus size: 120
67169382 CTAAGTGACC
* * * *
67169392 ATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCA
1 ATATCCGGACTAAGACCCAAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCA
* **
67169457 TTTGTGCGAGTTAATATATCCGGACTAAGGTCCGAAGGCATTTGTGCGAGTTACT
66 TTTGTGCGAGTTAATATAACCGGACTAAGGTCCGAAGGCATTTGAACGAGTTACT
*
67169512 A-ATTCCGGGCTAAG-CCCAAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGC
1 ATA-TCCGGACTAAGACCCAAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGC
* * *
67169575 ATTTGTGCGAGTTACTATAACCGGGCT-ATGTCCCGAAGGCATTTGAACGAG-TAGCT
65 ATTTGTGCGAGTTAATATAACCGGACTAAGGT-CCGAAGGCATTTGAACGAGTTA-CT
67169631 ATATCCGG
1 ATATCCGG
67169639 TTAAATTCCG
Statistics
Matches: 112, Mismatches: 11, Indels: 9
0.85 0.08 0.07
Matches are distributed among these distances:
118 5 0.04
119 95 0.85
120 12 0.11
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.26
Consensus pattern (120 bp):
ATATCCGGACTAAGACCCAAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCA
TTTGTGCGAGTTAATATAACCGGACTAAGGTCCGAAGGCATTTGAACGAGTTACT
Found at i:67172824 original size:16 final size:16
Alignment explanation
Indices: 67172803--67172839 Score: 65
Period size: 16 Copynumber: 2.3 Consensus size: 16
67172793 TTTTAAAAGG
67172803 AAAAAAAATGAATCTT
1 AAAAAAAATGAATCTT
*
67172819 AAAAAAAATGAGTCTT
1 AAAAAAAATGAATCTT
67172835 AAAAA
1 AAAAA
67172840 CATAATGAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.65, C:0.05, G:0.08, T:0.22
Consensus pattern (16 bp):
AAAAAAAATGAATCTT
Found at i:67184750 original size:56 final size:57
Alignment explanation
Indices: 67184680--67184790 Score: 145
Period size: 57 Copynumber: 2.0 Consensus size: 57
67184670 TACCTATATA
* *
67184680 TGGCCCACCAGGCCC-AATCTCTTTAATATGGCCCATTAAGCCC-AATCACATTTATG
1 TGGCCCACCAGGCCCAAATCACCTTAATATGG-CCATTAAGCCCAAATCACATTTATG
** * *
67184736 TGGCCCATTAGGCCCAAATCACCTTCATATGGCCATTAGGCCCAAATCACATTTA
1 TGGCCCACCAGGCCCAAATCACCTTAATATGGCCATTAAGCCCAAATCACATTTA
67184791 CAGTCATGCT
Statistics
Matches: 47, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
56 23 0.49
57 24 0.51
ACGTcount: A:0.28, C:0.32, G:0.14, T:0.26
Consensus pattern (57 bp):
TGGCCCACCAGGCCCAAATCACCTTAATATGGCCATTAAGCCCAAATCACATTTATG
Found at i:67184756 original size:29 final size:29
Alignment explanation
Indices: 67184676--67184790 Score: 130
Period size: 28 Copynumber: 4.1 Consensus size: 29
67184666 CACATACCTA
** *
67184676 TATATGGCCCACCAGGCCC-AATCTC-TT
1 TATATGGCCCATTAGGCCCAAATCACATT
*
67184703 TAATATGGCCCATTAAGCCC-AATCACATT
1 T-ATATGGCCCATTAGGCCCAAATCACATT
* *
67184732 TATGTGGCCCATTAGGCCCAAATCACCTT
1 TATATGGCCCATTAGGCCCAAATCACATT
*
67184761 CATATGG-CCATTAGGCCCAAATCACATT
1 TATATGGCCCATTAGGCCCAAATCACATT
67184789 TA
1 TA
67184791 CAGTCATGCT
Statistics
Matches: 74, Mismatches: 11, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
27 1 0.01
28 57 0.77
29 16 0.22
ACGTcount: A:0.29, C:0.30, G:0.14, T:0.27
Consensus pattern (29 bp):
TATATGGCCCATTAGGCCCAAATCACATT
Found at i:67186269 original size:15 final size:16
Alignment explanation
Indices: 67186243--67186281 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
67186233 AAAAGAAAAA
*
67186243 TTTGGGATTTTGAGATT
1 TTTGGG-TTTGGAGATT
*
67186260 TTTGGGTTTGGGGATT
1 TTTGGGTTTGGAGATT
67186276 TTTGGG
1 TTTGGG
67186282 GCGTTACAGG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 14 0.70
17 6 0.30
ACGTcount: A:0.10, C:0.00, G:0.38, T:0.51
Consensus pattern (16 bp):
TTTGGGTTTGGAGATT
Found at i:67187261 original size:12 final size:13
Alignment explanation
Indices: 67187238--67187266 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
67187228 ATCTTCCACC
67187238 AAAAAAGAAAAAG
1 AAAAAAGAAAAAG
67187251 AAAAAAG-AAAAG
1 AAAAAAGAAAAAG
67187263 AAAA
1 AAAA
67187267 CCTAGTCATG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 9 0.56
13 7 0.44
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (13 bp):
AAAAAAGAAAAAG
Found at i:67188191 original size:25 final size:25
Alignment explanation
Indices: 67188135--67188193 Score: 75
Period size: 25 Copynumber: 2.4 Consensus size: 25
67188125 TTACAACTCT
*
67188135 TATGAGCTTACCGATTCATAGCCCG
1 TATGAGCATACCGATTCATAGCCCG
* *
67188160 -AGAGAGCATACCGATTCATAGCTCG
1 TA-TGAGCATACCGATTCATAGCCCG
67188185 TATGAGCAT
1 TATGAGCAT
67188194 TCATGTATAT
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
24 1 0.04
25 26 0.93
26 1 0.04
ACGTcount: A:0.29, C:0.24, G:0.22, T:0.25
Consensus pattern (25 bp):
TATGAGCATACCGATTCATAGCCCG
Found at i:67188708 original size:17 final size:17
Alignment explanation
Indices: 67188683--67188716 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
67188673 GGTTAATTTG
67188683 GCCAATGTTGGCATATA
1 GCCAATGTTGGCATATA
*
67188700 GCCAGTGTTGGCATATA
1 GCCAATGTTGGCATATA
67188717 AGTGTCTTGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.29
Consensus pattern (17 bp):
GCCAATGTTGGCATATA
Found at i:67192736 original size:11 final size:11
Alignment explanation
Indices: 67192722--67192797 Score: 83
Period size: 11 Copynumber: 7.5 Consensus size: 11
67192712 CAATATTGAT
67192722 ATGATATGCAC
1 ATGATATGCAC
*
67192733 ATGATAT--AT
1 ATGATATGCAC
67192742 ATGATATGCAC
1 ATGATATGCAC
*
67192753 ATGATATGTAC
1 ATGATATGCAC
67192764 --GATATGCAC
1 ATGATATGCAC
*
67192773 ATGATATG--T
1 ATGATATGCAC
67192782 ATGATATGCAC
1 ATGATATGCAC
67192793 ATGAT
1 ATGAT
67192798 GTATTCATAA
Statistics
Matches: 53, Mismatches: 6, Indels: 12
0.75 0.08 0.17
Matches are distributed among these distances:
9 24 0.45
11 29 0.55
ACGTcount: A:0.37, C:0.12, G:0.18, T:0.33
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:67192768 original size:25 final size:21
Alignment explanation
Indices: 67192718--67192797 Score: 130
Period size: 20 Copynumber: 4.0 Consensus size: 21
67192708 TATACAATAT
67192718 TGATATGATATGCACATGATA
1 TGATATGATATGCACATGATA
67192739 T-ATATGATATGCACATGATA
1 TGATATGATATGCACATGATA
*
67192759 TG-TACGATATGCACATGATA
1 TGATATGATATGCACATGATA
67192779 TG-TATGATATGCACATGAT
1 TGATATGATATGCACATGAT
67192798 GTATTCATAA
Statistics
Matches: 56, Mismatches: 2, Indels: 3
0.92 0.03 0.05
Matches are distributed among these distances:
20 55 0.98
21 1 0.02
ACGTcount: A:0.36, C:0.11, G:0.19, T:0.34
Consensus pattern (21 bp):
TGATATGATATGCACATGATA
Found at i:67193126 original size:32 final size:32
Alignment explanation
Indices: 67193089--67193153 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 32
67193079 CGTTTACAGT
67193089 AAAGGCTTCGGCCCAGTAATATGAAATATGAA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGAA
** *
67193121 AAAGGCTTCGGCCCAGTGTTATGCAATATGAA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGAA
67193153 A
1 A
67193154 TATGTAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.37, C:0.17, G:0.23, T:0.23
Consensus pattern (32 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGAA
Found at i:67201068 original size:6 final size:6
Alignment explanation
Indices: 67201059--67201125 Score: 64
Period size: 6 Copynumber: 10.8 Consensus size: 6
67201049 TTGCATTCAC
* * *
67201059 ATTCTG ATTCTG ATTCTG TTATCTG ATACTG ATTCTG ATTCTG -TCACCTG
1 ATTCTG ATTCTG ATTCTG AT-TCTG ATTCTG ATTCTG ATTCTG AT--TCTG
*
67201109 ATTCTG ATTTTG ATTCT
1 ATTCTG ATTCTG ATTCT
67201126 CATTTTCATT
Statistics
Matches: 49, Mismatches: 8, Indels: 8
0.75 0.12 0.12
Matches are distributed among these distances:
5 1 0.02
6 39 0.80
7 8 0.16
8 1 0.02
ACGTcount: A:0.18, C:0.18, G:0.15, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:67201092 original size:25 final size:25
Alignment explanation
Indices: 67201062--67201125 Score: 92
Period size: 25 Copynumber: 2.6 Consensus size: 25
67201052 CATTCACATT
* *
67201062 CTGATTCTGATTCTGTTATCTGATA
1 CTGATTCTGATTCTGTCACCTGATA
*
67201087 CTGATTCTGATTCTGTCACCTGATT
1 CTGATTCTGATTCTGTCACCTGATA
*
67201112 CTGATTTTGATTCT
1 CTGATTCTGATTCT
67201126 CATTTTCATT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 35 1.00
ACGTcount: A:0.17, C:0.19, G:0.16, T:0.48
Consensus pattern (25 bp):
CTGATTCTGATTCTGTCACCTGATA
Found at i:67203150 original size:27 final size:26
Alignment explanation
Indices: 67203120--67203269 Score: 176
Period size: 27 Copynumber: 5.6 Consensus size: 26
67203110 TTAGTTTACC
* *
67203120 AAATCACCAAAATACACCTGGTTTGTA
1 AAATTACCAAAATAC-CCTGGTTTATA
* *
67203147 AAATTATCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCC-TGGTTTATA
67203174 AAATTACCAAAATACCCCTGGTTTAT-
1 AAATTACCAAAATA-CCCTGGTTTATA
*
67203200 AAATTACCAAAATACCCTTGGTTTGTA
1 AAATTACCAAAATACCC-TGGTTTATA
* *
67203227 AAATTACCAAAATACCCCTGATTTATG
1 AAATTACCAAAATA-CCCTGGTTTATA
*
67203254 AAATTACCGAAATACC
1 AAATTACCAAAATACC
67203270 TTTAGTTTGC
Statistics
Matches: 107, Mismatches: 11, Indels: 11
0.83 0.09 0.09
Matches are distributed among these distances:
25 3 0.03
26 25 0.23
27 73 0.68
28 6 0.06
ACGTcount: A:0.41, C:0.21, G:0.09, T:0.29
Consensus pattern (26 bp):
AAATTACCAAAATACCCTGGTTTATA
Found at i:67203185 original size:54 final size:54
Alignment explanation
Indices: 67203113--67203325 Score: 223
Period size: 54 Copynumber: 4.0 Consensus size: 54
67203103 GAATACTTTA
* * * * * *
67203113 GTTTACCAAATCACCAAAATACACCTGGTTTGTAAAATTATCAAAATACCCTTG
1 GTTTACAAAATTACCAAAATACCCCTGATTTATAAAATTACCAAAATACCCTTG
*
67203167 GTTTACAAAATTACCAAAATACCCCTGGTTTAT-AAATTACCAAAATACCCTTG
1 GTTTACAAAATTACCAAAATACCCCTGATTTATAAAATTACCAAAATACCCTTG
** * * * *
67203220 GTTTGTAAAATTACCAAAATACCCCTGATTTATGAAATTACCGAAATACCTTTA
1 GTTTACAAAATTACCAAAATACCCCTGATTTATAAAATTACCAAAATACCCTTG
* ** * * **
67203274 GTTTGCAAAATTACTGAAATA-CCCTCGACTTGTAAAATTACTGAAATACCCT
1 GTTTACAAAATTACCAAAATACCCCT-GATTTATAAAATTACCAAAATACCCT
67203326 CGACTTGTAA
Statistics
Matches: 138, Mismatches: 19, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
53 53 0.38
54 85 0.62
ACGTcount: A:0.38, C:0.21, G:0.09, T:0.31
Consensus pattern (54 bp):
GTTTACAAAATTACCAAAATACCCCTGATTTATAAAATTACCAAAATACCCTTG
Found at i:67203211 original size:53 final size:54
Alignment explanation
Indices: 67203113--67203297 Score: 228
Period size: 54 Copynumber: 3.4 Consensus size: 54
67203103 GAATACTTTA
* * * * *
67203113 GTTTACCAAATCACCAAAATACACCTGGTTTGTAAAATTATCAAAATACCCTTG
1 GTTTACAAAATTACCAAAATACCCCTGGTTTATAAAATTACCAAAATACCCTTG
67203167 GTTTACAAAATTACCAAAATACCCCTGGTTTAT-AAATTACCAAAATACCCTTG
1 GTTTACAAAATTACCAAAATACCCCTGGTTTATAAAATTACCAAAATACCCTTG
** * * * * *
67203220 GTTTGTAAAATTACCAAAATACCCCTGATTTATGAAATTACCGAAATACCTTTA
1 GTTTACAAAATTACCAAAATACCCCTGGTTTATAAAATTACCAAAATACCCTTG
* **
67203274 GTTTGCAAAATTACTGAAATACCC
1 GTTTACAAAATTACCAAAATACCC
67203298 TCGACTTGTA
Statistics
Matches: 116, Mismatches: 14, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
53 49 0.42
54 67 0.58
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.31
Consensus pattern (54 bp):
GTTTACAAAATTACCAAAATACCCCTGGTTTATAAAATTACCAAAATACCCTTG
Found at i:67203238 original size:80 final size:80
Alignment explanation
Indices: 67203120--67203269 Score: 221
Period size: 80 Copynumber: 1.9 Consensus size: 80
67203110 TTAGTTTACC
* * *
67203120 AAATCACCAAAATACACCTGGTTTGTAAAATTATCAAAATACCCTTGGTTTACAAAATTACCAAA
1 AAATCACCAAAATACACCTGGTTTGTAAAATTACCAAAATACCCCTGATTTACAAAATTACCAAA
67203185 ATACCCCTGGTTTAT
66 ATACCCCTGGTTTAT
* ** *
67203200 AAATTACCAAAATAC-CCTTGGTTTGTAAAATTACCAAAATACCCCTGATTTATGAAATTACCGA
1 AAATCACCAAAATACACC-TGGTTTGTAAAATTACCAAAATACCCCTGATTTACAAAATTACCAA
67203264 AATACC
65 AATACC
67203270 TTTAGTTTGC
Statistics
Matches: 62, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
79 2 0.03
80 60 0.97
ACGTcount: A:0.41, C:0.21, G:0.09, T:0.29
Consensus pattern (80 bp):
AAATCACCAAAATACACCTGGTTTGTAAAATTACCAAAATACCCCTGATTTACAAAATTACCAAA
ATACCCCTGGTTTAT
Found at i:67203284 original size:27 final size:26
Alignment explanation
Indices: 67203120--67203345 Score: 170
Period size: 27 Copynumber: 8.4 Consensus size: 26
67203110 TTAGTTTACC
*
67203120 AAATCACCAAAATACACC-TGGTTTGTA
1 AAATTACCAAAATAC-CCTTGGTTTG-A
* *
67203147 AAATTATCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCTTGGTTT-GA
*
67203174 AAATTACCAAAATACCCCTGGTTT-A
1 AAATTACCAAAATACCCTTGGTTTGA
67203199 TAAATTACCAAAATACCCTTGGTTTGTA
1 -AAATTACCAAAATACCCTTGGTTTG-A
* *
67203227 AAATTACCAAAATACCCCTGATTT-A
1 AAATTACCAAAATACCCTTGGTTTGA
* * *
67203252 TGAAATTACCGAAATACCTTTAGTTTGCA
1 --AAATTACCAAAATACCCTTGGTTTG-A
** * **
67203281 AAATTACTGAAATACCCTCGACTTGTA
1 AAATTACCAAAATACCCTTGGTTTG-A
** * **
67203308 AAATTACTGAAATACCCTCGACTTGTA
1 AAATTACCAAAATACCCTTGGTTTG-A
67203335 AAATTACCAAA
1 AAATTACCAAA
67203346 GCACCCTCGA
Statistics
Matches: 168, Mismatches: 22, Indels: 18
0.81 0.11 0.09
Matches are distributed among these distances:
25 2 0.01
26 25 0.15
27 139 0.83
28 1 0.01
29 1 0.01
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (26 bp):
AAATTACCAAAATACCCTTGGTTTGA
Found at i:67203351 original size:27 final size:27
Alignment explanation
Indices: 67203280--67203355 Score: 100
Period size: 27 Copynumber: 2.8 Consensus size: 27
67203270 TTTAGTTTGC
* *
67203280 AAAATTACTGAAATACCCTCGACTTGT
1 AAAATTACTCAAACACCCTCGACTTGT
* *
67203307 AAAATTACTGAAATACCCTCGACTTGT
1 AAAATTACTCAAACACCCTCGACTTGT
67203334 AAAATTAC-CAAAGCACCCTCGA
1 AAAATTACTCAAA-CACCCTCGA
67203356 TTTACAGAAT
Statistics
Matches: 46, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
26 3 0.07
27 43 0.93
ACGTcount: A:0.39, C:0.25, G:0.11, T:0.25
Consensus pattern (27 bp):
AAAATTACTCAAACACCCTCGACTTGT
Found at i:67203420 original size:27 final size:27
Alignment explanation
Indices: 67203398--67204408 Score: 554
Period size: 27 Copynumber: 37.0 Consensus size: 27
67203388 AAAATTATTA
67203398 AAATACACC-TGTAGGGTAGAATTACCG
1 AAATAC-CCTTGTAGGGTAGAATTACCG
* **
67203425 AAATACCCTTGTAGGATAGAATTATTG
1 AAATACCCTTGTAGGGTAGAATTACCG
* **
67203452 AAATACCCCTGTAGGGTAGAATTATTG
1 AAATACCCTTGTAGGGTAGAATTACCG
* * *
67203479 AAATACCCTTGTAAGGTAGAAATATCG
1 AAATACCCTTGTAGGGTAGAATTACCG
* **
67203506 AAATACCCTTGTAGGGTAGAAATACAT
1 AAATACCCTTGTAGGGTAGAATTACCG
*
67203533 AAATACCCTTGTAGGGTAGAAATACCG
1 AAATACCCTTGTAGGGTAGAATTACCG
* *
67203560 AAATACCAC-TATAGGATAGAATTACCG
1 AAATACC-CTTGTAGGGTAGAATTACCG
**
67203587 AAATACCCTTGTAGGGTAGAATTACTA
1 AAATACCCTTGTAGGGTAGAATTACCG
** * *
67203614 AAATACTGTTGTAGGGTAAAAATACCG
1 AAATACCCTTGTAGGGTAGAATTACCG
*
67203641 AAATACCCTTGTAGGGTAGAAATACCG
1 AAATACCCTTGTAGGGTAGAATTACCG
* ** * * *
67203668 AAATACCCCTATTTAGAATACTTTAGTTTACCAAATCACCA
1 AAATA-CCCT-TGTAGGGTA---GA-ATT--------ACCG
* * ** * * *
67203709 AAATACCCCT-AATTTGTAAAAATACCA
1 AAATACCCTTGTA-GGGTAGAATTACCG
** * *
67203736 AAATACCCTTGGT-TTGTAAAATTACCA
1 AAATACCCTT-GTAGGGTAGAATTACCG
** * *
67203763 AAATACCCTTGGT-TTGTAAAATTACCA
1 AAATACCCTT-GTAGGGTAGAATTACCG
** * *
67203790 AAATACCCTTAGT-TTGTAAAATTACCA
1 AAATACCCTT-GTAGGGTAGAATTACCG
* ** ***
67203817 AAATACCCCTG-ATTTGT-GAAATTATTA
1 AAATACCCTTGTA-GGGTAG-AATTACCG
* ** * **
67203844 AAATACCCTCG-ATTTGTAAAATTATTG
1 AAATACCCTTGTA-GGGTAGAATTACCG
** *
67203871 AAATA-CCTTCG-ACTTGTAAAATTACC-
1 AAATACCCTT-GTA-GGGTAGAATTACCG
67203897 AAAGTACCCCCAATT-TA---TAGAATTACCG
1 AAA-TA--CCC--TTGTAGGGTAGAATTACCG
*** * ***
67203925 TTTTA-CCTTCGATTA--CTA-AATTATTA
1 AAATACCCTT-G--TAGGGTAGAATTACCG
* *
67203951 AAATACCCCTGTAGGGTAGAATTACCT
1 AAATACCCTTGTAGGGTAGAATTACCG
* *
67203978 AAATACCTTTGTAGGGTAGAAATACCG
1 AAATACCCTTGTAGGGTAGAATTACCG
* *
67204005 AAATACCCCTGTAGGGTAGAATTACTG
1 AAATACCCTTGTAGGGTAGAATTACCG
** **
67204032 AAATACCGC-TGTACAGTAGAATTATTG
1 AAATACC-CTTGTAGGGTAGAATTACCG
* *
67204059 AAATACCCTTGTAGGGTAAAAATACCG
1 AAATACCCTTGTAGGGTAGAATTACCG
*
67204086 AAATACCCTTGTAGGGTAGAAATACCG
1 AAATACCCTTGTAGGGTAGAATTACCG
* * ***
67204113 AAATACCCCTATAGGGTAGAATTATTA
1 AAATACCCTTGTAGGGTAGAATTACCG
* *
67204140 AAATACCCTTGTATGGTAGAAATACCG
1 AAATACCCTTGTAGGGTAGAATTACCG
* * *
67204167 AAATACCCCTATAGGGTAGAATTACCA
1 AAATACCCTTGTAGGGTAGAATTACCG
* * *
67204194 AAATACCCCTGTAAGGTAGAATTATCG
1 AAATACCCTTGTAGGGTAGAATTACCG
* *
67204221 AAATACCCTTGTAGAGTAGAAATACCG
1 AAATACCCTTGTAGGGTAGAATTACCG
*
67204248 AAATACCCTTGTAGGGTAGAAATACCG
1 AAATACCCTTGTAGGGTAGAATTACCG
*
67204275 AAATACTCC-TGTAGGGTAGAATTACTG
1 AAATAC-CCTTGTAGGGTAGAATTACCG
* * *
67204302 AAATACCCCTGTAGCGTAGAATTATCG
1 AAATACCCTTGTAGGGTAGAATTACCG
** * *
67204329 AAATACCCTTGTAAAGTAGAAATACTG
1 AAATACCCTTGTAGGGTAGAATTACCG
*
67204356 AAATACCCCTGTAGGGTAGAATTACCG
1 AAATACCCTTGTAGGGTAGAATTACCG
* * * *
67204383 AGATACCCTTATGGGGTAAAATTACC
1 AAATACCCTTGTAGGGTAGAATTACC
67204409 ATTTTGTCCC
Statistics
Matches: 794, Mismatches: 144, Indels: 92
0.77 0.14 0.09
Matches are distributed among these distances:
22 2 0.00
24 4 0.01
26 25 0.03
27 725 0.91
28 8 0.01
29 6 0.01
30 2 0.00
31 1 0.00
32 3 0.00
33 1 0.00
35 1 0.00
36 1 0.00
38 1 0.00
39 3 0.00
40 3 0.00
41 8 0.01
ACGTcount: A:0.38, C:0.18, G:0.16, T:0.28
Consensus pattern (27 bp):
AAATACCCTTGTAGGGTAGAATTACCG
Found at i:67205199 original size:27 final size:26
Alignment explanation
Indices: 67205151--67205223 Score: 101
Period size: 27 Copynumber: 2.8 Consensus size: 26
67205141 TAAGTGGTTT
* *
67205151 TGCCACATTATCTGTTCTGGTGGCTC
1 TGCCACAATATCTGTTCTGGTGACTC
*
67205177 TGCCACAATATTTGTATCTGGTGACTC
1 TGCCACAATATCTGT-TCTGGTGACTC
*
67205204 TGTCACAATATCTGTTCTGG
1 TGCCACAATATCTGTTCTGG
67205224 CAGCCATGTT
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
26 18 0.44
27 23 0.56
ACGTcount: A:0.18, C:0.23, G:0.21, T:0.38
Consensus pattern (26 bp):
TGCCACAATATCTGTTCTGGTGACTC
Found at i:67205350 original size:6 final size:6
Alignment explanation
Indices: 67205341--67205388 Score: 62
Period size: 6 Copynumber: 7.8 Consensus size: 6
67205331 TTGCATTCAC
*
67205341 ATTCTG ATTCTG ATTCTG ATTCTG -TCACCTG ATTCTG ATTCTG ATTCT
1 ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCT
67205389 CATTTTCATT
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
5 1 0.03
6 32 0.86
7 3 0.08
8 1 0.03
ACGTcount: A:0.17, C:0.21, G:0.15, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:67211853 original size:39 final size:39
Alignment explanation
Indices: 67211766--67212021 Score: 327
Period size: 39 Copynumber: 6.6 Consensus size: 39
67211756 AGGATTTTAA
* * * *
67211766 CCGGGCTAAGACCCGCAGGC-TTTGTG-TGAGATTTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTGATA-TTATAT
67211804 CCGGGCTAAGTCCCGAAGGCATTCGTGCTGATATTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTGATATTATAT
* * * * *
67211843 CCAGGATAAGTCCCGAATGCATTTGTGCTGATATTGTAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTGATATTATAT
* * *
67211882 CTGGGTTAAGTCCCGAAGGCATTCGTGCTGGTATTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTGATATTATAT
* *
67211921 CCGGGCTAAGTCTCGAAGGCATTTGTGCTGATATTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTGATATTATAT
* *
67211960 CCGGGCAAAGTCCCGAAGGCATTCGTGCTGATGTTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTGATATTATAT
* *
67211999 CTGGGCTAAGTTCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATT
67212022 TGGGTTGGAA
Statistics
Matches: 188, Mismatches: 28, Indels: 3
0.86 0.13 0.01
Matches are distributed among these distances:
38 18 0.10
39 166 0.88
40 4 0.02
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCTGATATTATAT
Found at i:67213810 original size:25 final size:25
Alignment explanation
Indices: 67213720--67213835 Score: 108
Period size: 25 Copynumber: 4.6 Consensus size: 25
67213710 GCAGACACAC
* *
67213720 CACAGCTCGTATAAGCTTCCCGATT
1 CACAGCTCGTATGAGCTTACCGATT
* * *
67213745 GACAGGTCGTATGAGCTTCCCGATT
1 CACAGCTCGTATGAGCTTACCGATT
** *
67213770 TGCAGCTCTTATGAGCTTACCGATT
1 CACAGCTCGTATGAGCTTACCGATT
* * *
67213795 CACAGCTCGTGA-GAGCATATCAATT
1 CACAGCTCGT-ATGAGCTTACCGATT
*
67213820 CATAGCTCGTATGAGC
1 CACAGCTCGTATGAGC
67213836 ATTCATGAAT
Statistics
Matches: 74, Mismatches: 15, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
24 1 0.01
25 72 0.97
26 1 0.01
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (25 bp):
CACAGCTCGTATGAGCTTACCGATT
Found at i:67217636 original size:47 final size:47
Alignment explanation
Indices: 67217483--67217659 Score: 157
Period size: 47 Copynumber: 3.8 Consensus size: 47
67217473 TCATTTGTTA
* * *
67217483 GAGCTAGTGTAAGACCATGTCTAGGACATGGCATTGGAATTGAGACGA-
1 GAGCTAGTGTAAGACCATGTCTAGGACATGGCA-TCGACTTGAGA-TAT
* * * * *
67217531 GGGCTAGTGTAAGA-CATGTTTGGGACAT-GCATCGGCTACGAGATAAT
1 GAGCTAGTGTAAGACCATGTCTAGGACATGGCATCGACT-TGAGAT-AT
** * *
67217578 -AG-TCAAAGTAAGACCATGTATGGGACATGGCATCGACTTGAGATAT
1 GAGCT-AGTGTAAGACCATGTCTAGGACATGGCATCGACTTGAGATAT
*
67217624 GAGCTAGTGTAAGACCGTGTCTAGGACATGGCATCG
1 GAGCTAGTGTAAGACCATGTCTAGGACATGGCATCG
67217660 GCACCTTACC
Statistics
Matches: 102, Mismatches: 19, Indels: 17
0.74 0.14 0.12
Matches are distributed among these distances:
45 4 0.04
46 18 0.18
47 58 0.57
48 22 0.22
ACGTcount: A:0.30, C:0.16, G:0.31, T:0.24
Consensus pattern (47 bp):
GAGCTAGTGTAAGACCATGTCTAGGACATGGCATCGACTTGAGATAT
Found at i:67223649 original size:209 final size:209
Alignment explanation
Indices: 67223289--67223711 Score: 747
Period size: 209 Copynumber: 2.0 Consensus size: 209
67223279 TGCATATGTG
* *
67223289 ATTGATTCGAGAGTGTCAGAAAAGAAAATTGAATTAGTCCCTATTGTGTGTGAGTTCCCTAATGT
1 ATTGATTCGAGAGTGTCAGAAAAGAAAATTGAATCAGTCCCTATTGTCTGTGAGTTCCCTAATGT
67223354 ATATCCTGAAGAACTTCTGGGTTTACCTCCGATTAGAGAAGTAGAGTTTGACATTGAATTGGTAC
66 ATATCCTGAAGAACTTCTGGGTTTACCTCCGATTAGAGAAGTAGAGTTTGACATTGAATTGGTAC
* * ** *
67223419 CTGGTACTACTCTGGTTTCAATAGCTCTGTATAGAATGGCTTCGATTGAACTGATAGAATTAAAG
131 ATGGTACTACTCTGATTTCAATAGCTCTGTATAGAATGGCTTCGACCGAACTGAAAGAATTAAAG
67223484 TCTCAGTTGCAAGA
196 TCTCAGTTGCAAGA
* * * *
67223498 ATTGATTCGAGAGTGTCAGAAAAGAAAGTTGAATCAGTGCTTATTGTCTGTGAGTTCCCTGATGT
1 ATTGATTCGAGAGTGTCAGAAAAGAAAATTGAATCAGTCCCTATTGTCTGTGAGTTCCCTAATGT
67223563 ATATCCTGAAGAACTTCTGGGTTTACCTCCGATTAGAGAAGTAGAGTTTGACATTGAATTGGTAC
66 ATATCCTGAAGAACTTCTGGGTTTACCTCCGATTAGAGAAGTAGAGTTTGACATTGAATTGGTAC
67223628 ATGGTACTACTCTGATTTCAATAGCTCTGTATAGAATGGCTTCGACCGAACTGAAAGAATTAAAG
131 ATGGTACTACTCTGATTTCAATAGCTCTGTATAGAATGGCTTCGACCGAACTGAAAGAATTAAAG
67223693 TCTCAGTTGCAAGA
196 TCTCAGTTGCAAGA
67223707 ATTGA
1 ATTGA
67223712 CTGATAGAGG
Statistics
Matches: 203, Mismatches: 11, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
209 203 1.00
ACGTcount: A:0.30, C:0.15, G:0.23, T:0.32
Consensus pattern (209 bp):
ATTGATTCGAGAGTGTCAGAAAAGAAAATTGAATCAGTCCCTATTGTCTGTGAGTTCCCTAATGT
ATATCCTGAAGAACTTCTGGGTTTACCTCCGATTAGAGAAGTAGAGTTTGACATTGAATTGGTAC
ATGGTACTACTCTGATTTCAATAGCTCTGTATAGAATGGCTTCGACCGAACTGAAAGAATTAAAG
TCTCAGTTGCAAGA
Found at i:67227947 original size:262 final size:265
Alignment explanation
Indices: 67227482--67228009 Score: 981
Period size: 262 Copynumber: 2.0 Consensus size: 265
67227472 ACTCTTTCAT
67227482 AGAGTCTTCTAGCTCCCAAGTAGCCTCTTCTACTCCATGTTTGACCCATAATACTTTTACTAAAG
1 AGAGTCTTCTAGCTCCCAAGTAGCCTCTTCTACTCCATGTTTGACCCATAATACTTTTACTAAAG
67227547 AAATCTTCTTATTCCGCATTTCTTTCACTTCCTGAGCTAAGATACGGATCGGTTCTTCTTCATAG
66 AAATCTTCTTATTCCGCATTTCTTTCACTTCCTGAGCTAAGATACGGATCGGTTCTTCTTCATAG
67227612 CTCAAATCCGATTGAATCTCAATTTCAGATGGACTAACCACATGTGAAGGATCAGATCTATACCG
131 CTCAAATCCGATTGAATCTCAATTTCAGATGGACTAACCACATGTGAAGGATCAGATCTATACCG
67227677 TCTAAGCATCGATACATGGAAT-A-A-AATCTTTGCGAGTTCATGTGGCAGAACCAATCTATAAG
196 TCTAAGCATCGATACATGGAATAATAGAATCTTTGCGAGTTCATGTGGCAGAACCAATCTATAAG
67227739 CAAAA
261 CAAAA
67227744 AGAGTCTTCTAGCTCCCAAGTAGCCTCTTCTACTCCATGTTTGACCCATAATACTTTTACTAAAG
1 AGAGTCTTCTAGCTCCCAAGTAGCCTCTTCTACTCCATGTTTGACCCATAATACTTTTACTAAAG
*
67227809 AAATCTTCTTATTCCGCATTTCTTTCACTTCCTGAGCTAAGATACGGATTGGTTCTTCTTCATAG
66 AAATCTTCTTATTCCGCATTTCTTTCACTTCCTGAGCTAAGATACGGATCGGTTCTTCTTCATAG
*
67227874 CTCAAATCTGATTGAATCTCAATTTCAGATGGACTAACCACATGTGAAGGATCAGATCTATACCG
131 CTCAAATCCGATTGAATCTCAATTTCAGATGGACTAACCACATGTGAAGGATCAGATCTATACCG
*
67227939 TCTAAGCATCGATACATGGAATACATTATGAATCTTTGCGAGTTCATGTGGCCGAACCAATCTAT
196 TCTAAGCATCGATACATGGAATA-A-TA-GAATCTTTGCGAGTTCATGTGGCAGAACCAATCTAT
67228004 AAGCAA
258 AAGCAA
67228010 CCGGTCCTAT
Statistics
Matches: 257, Mismatches: 3, Indels: 6
0.97 0.01 0.02
Matches are distributed among these distances:
262 215 0.84
264 1 0.00
266 1 0.00
268 40 0.16
ACGTcount: A:0.30, C:0.23, G:0.15, T:0.32
Consensus pattern (265 bp):
AGAGTCTTCTAGCTCCCAAGTAGCCTCTTCTACTCCATGTTTGACCCATAATACTTTTACTAAAG
AAATCTTCTTATTCCGCATTTCTTTCACTTCCTGAGCTAAGATACGGATCGGTTCTTCTTCATAG
CTCAAATCCGATTGAATCTCAATTTCAGATGGACTAACCACATGTGAAGGATCAGATCTATACCG
TCTAAGCATCGATACATGGAATAATAGAATCTTTGCGAGTTCATGTGGCAGAACCAATCTATAAG
CAAAA
Found at i:67236262 original size:15 final size:15
Alignment explanation
Indices: 67236234--67236266 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
67236224 TGATGTTGGA
*
67236234 TTTATATGTGTTGTC
1 TTTATATATGTTGTC
67236249 TTTATATATGTTGTC
1 TTTATATATGTTGTC
67236264 TTT
1 TTT
67236267 GAATTTTTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.15, C:0.06, G:0.15, T:0.64
Consensus pattern (15 bp):
TTTATATATGTTGTC
Found at i:67242113 original size:46 final size:45
Alignment explanation
Indices: 67242062--67242186 Score: 196
Period size: 46 Copynumber: 2.7 Consensus size: 45
67242052 GGTTGAGCAT
*
67242062 CCGAACTCGTTGAGTTGAGTCAGAGTTCACTTATGGATGCGAATG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
67242107 TTCGAACTCGTTGAGTTGAGTCCGAGGTCACTTATGGATGCGAATG
1 -CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
*
67242153 CCTGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 CC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTA
67242187 GGGGCGGGTT
Statistics
Matches: 72, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
45 1 0.01
46 71 0.99
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.30
Consensus pattern (45 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:67248735 original size:46 final size:46
Alignment explanation
Indices: 67248685--67248856 Score: 201
Period size: 46 Copynumber: 3.7 Consensus size: 46
67248675 TGGTTGAGCA
67248685 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
67248731 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
67248776 CATCCGAACTCGTTGAGTTGAGT-CGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
67248823 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
67248857 GGGGCGGGTT
Statistics
Matches: 105, Mismatches: 11, Indels: 20
0.77 0.08 0.15
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 22 0.21
46 48 0.46
47 24 0.23
49 3 0.03
50 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:67248840 original size:92 final size:93
Alignment explanation
Indices: 67248682--67248851 Score: 306
Period size: 92 Copynumber: 1.8 Consensus size: 93
67248672 GGATGGTTGA
* *
67248682 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
67248747 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
*
67248775 GCATCCGAACTCGTTGAGTTGAGT-CGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
67248839 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
67248852 ACTTAGGGGC
Statistics
Matches: 74, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
92 50 0.68
93 24 0.32
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:67249761 original size:20 final size:21
Alignment explanation
Indices: 67249724--67249764 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
67249714 TTCTGACTTT
*
67249724 AAAAATTCATAATAAATTTTA
1 AAAAATTAATAATAAATTTTA
* *
67249745 AAAAATTAATTATAATTTTT
1 AAAAATTAATAATAAATTTT
67249765 TATTTATATG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (21 bp):
AAAAATTAATAATAAATTTTA
Found at i:67261547 original size:96 final size:95
Alignment explanation
Indices: 67261341--67261627 Score: 310
Period size: 96 Copynumber: 3.0 Consensus size: 95
67261331 AAAGGGTAAG
* * * * * * * *
67261341 ATGCCGATGTCATGTCCCAGACATGTTCTTACACTAGCTCTCATATATCG-GTGCCAATGCCATG
1 ATGCCGAGGCCATGTTCCAAACATGGTCTTACACT-G-GCTCACATATCGAG-GCCGATGCCATG
* * *
67261405 TTCCAGACATGGTCTTATACTGGCTCAT-ACAATA
63 -TCCAGACATGGTCTTACACTGGCTC-TCATAACA
*
67261439 ATGCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATATCGAGGCCGATGCCATGTCC
1 ATGCCGAGGCCATGTTCCAAACATGGTCTTACACTGGCTCACATATCGAGGCCGATGCCATGTCC
*
67261504 TAGACATGGTCTTACACTAGCTCTCATAACA
66 -AGACATGGTCTTACACTGGCTCTCATAACA
* * **
67261535 ATGTCGAGGCCATGTTTCAAATGTGGTCTTACACTGGCTCACATAAT-GAGGCCGATGCCATGTC
1 ATGCCGAGGCCATGTTCCAAACATGGTCTTACACTGGCTCACAT-ATCGAGGCCGATGCCATGT-
* *
67261599 CCAAACATGGTCTTACACTGGCTCACATA
64 CCAGACATGGTCTTACACTGGCTCTCATA
67261628 TAACCCTAGT
Statistics
Matches: 165, Mismatches: 19, Indels: 12
0.84 0.10 0.06
Matches are distributed among these distances:
95 4 0.02
96 124 0.75
97 6 0.04
98 31 0.19
ACGTcount: A:0.26, C:0.27, G:0.19, T:0.28
Consensus pattern (95 bp):
ATGCCGAGGCCATGTTCCAAACATGGTCTTACACTGGCTCACATATCGAGGCCGATGCCATGTCC
AGACATGGTCTTACACTGGCTCTCATAACA
Found at i:67261605 original size:144 final size:146
Alignment explanation
Indices: 67261343--67261628 Score: 396
Period size: 144 Copynumber: 2.0 Consensus size: 146
67261333 AGGGTAAGAT
* * ** *
67261343 GCCGATGTCATGTCCCAGACATGTTCTTACACTAGCTCTCATATATCGGTGCCAATGCCATGTTC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATATCAATGCCAAGGCCATGTTC
* * * * *
67261408 CAGACATGGTCTTATACTGGCTCATACAATAATGCCGATGCCATGTTCCAAACATGGTCTTACAC
66 CAAACATGGTCTTACACTGGCTCACACAATAAGGCCGATGCCATGTCCCAAACATGGTCTTACAC
67261473 TGGCTCACATATCGAG
131 TGGCTCACATATCGAG
* * * *
67261489 GCCGATGCCATGTCCTAGACATGGTCTTACACTAGCTCTCATA-A-CAATGTCGAGGCCATGTTT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATATCAATGCCAAGGCCATGTTC
** * *
67261552 CAAATGTGGTCTTACACTGGCTCACATAATGAGGCCGATGCCATGTCCCAAACATGGTCTTACAC
66 CAAACATGGTCTTACACTGGCTCACACAATAAGGCCGATGCCATGTCCCAAACATGGTCTTACAC
67261617 TGGCTCACATAT
131 TGGCTCACATAT
67261629 AACCCTAGTA
Statistics
Matches: 122, Mismatches: 18, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
144 81 0.66
145 1 0.01
146 40 0.33
ACGTcount: A:0.26, C:0.27, G:0.19, T:0.28
Consensus pattern (146 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATATCAATGCCAAGGCCATGTTC
CAAACATGGTCTTACACTGGCTCACACAATAAGGCCGATGCCATGTCCCAAACATGGTCTTACAC
TGGCTCACATATCGAG
Found at i:67261624 original size:48 final size:48
Alignment explanation
Indices: 67261343--67261627 Score: 277
Period size: 48 Copynumber: 5.9 Consensus size: 48
67261333 AGGGTAAGAT
* * * * *
67261343 GCCGATGTCATGTCCCAGACATGTTCTTACACTAGCTCTCATATATCG-G
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATA-AT-GAG
* * * * * * * *
67261392 TGCCAATGCCATGTTCCAGACATGGTCTTATACTGGCTCATACAATAAT
1 -GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATAATGAG
*
67261441 GCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACAT-ATCGAG
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATAAT-GAG
* * * * ** *
67261489 GCCGATGCCATGTCCTAGACATGGTCTTACACTAGCTCTCATAACAAT
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATAATGAG
* * ** **
67261537 GTCGAGGCCATGTTTCAAATGTGGTCTTACACTGGCTCACATAATGAG
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATAATGAG
67261585 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATA
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATA
67261628 TAACCCTAGT
Statistics
Matches: 187, Mismatches: 45, Indels: 8
0.78 0.19 0.03
Matches are distributed among these distances:
47 2 0.01
48 148 0.79
49 3 0.02
50 34 0.18
ACGTcount: A:0.26, C:0.27, G:0.19, T:0.28
Consensus pattern (48 bp):
GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATAATGAG
Found at i:67265859 original size:40 final size:40
Alignment explanation
Indices: 67265785--67265966 Score: 305
Period size: 40 Copynumber: 4.6 Consensus size: 40
67265775 AACCCAAGTA
* *
67265785 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
*
67265824 CCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
67265864 CCTTCGGGACTTAGCCCGGATATAGTTACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
67265904 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
67265944 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
67265967 CATTCGAATA
Statistics
Matches: 135, Mismatches: 6, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
39 12 0.09
40 122 0.90
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:67269222 original size:21 final size:21
Alignment explanation
Indices: 67269198--67269245 Score: 69
Period size: 21 Copynumber: 2.3 Consensus size: 21
67269188 AGCACGGACG
*
67269198 TGTCCCAAGGTTACACGAGCA
1 TGTCCCAAGGTCACACGAGCA
* *
67269219 TGTCCCAAGGTCACACGGGCG
1 TGTCCCAAGGTCACACGAGCA
67269240 TGTCCC
1 TGTCCC
67269246 TTGGACCACA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.21, C:0.33, G:0.27, T:0.19
Consensus pattern (21 bp):
TGTCCCAAGGTCACACGAGCA
Found at i:67270661 original size:43 final size:43
Alignment explanation
Indices: 67270614--67270757 Score: 152
Period size: 43 Copynumber: 3.3 Consensus size: 43
67270604 CCAAATATCA
* * *
67270614 TCTTACATGTTATCACATATAAATGCCACTGTCCCAGAC-TGGG
1 TCTTACACGTAATCACATATAAATGCCAATGTCCCAGACAT-GG
*
67270657 TCTTACACGAAATCA-AT-TAACGATGCCAATGTCCCAGACATGG
1 TCTTACACGTAATCACATATAA--ATGCCAATGTCCCAGACATGG
* * *
67270700 CCTTACACGTAATCTCA-ATACAATGCCAATGTCCCAAACATGG
1 TCTTACACGTAATCACATATA-AATGCCAATGTCCCAGACATGG
*
67270743 TCTTACATGTAATCA
1 TCTTACACGTAATCA
67270758 TATCTCGATA
Statistics
Matches: 84, Mismatches: 11, Indels: 12
0.79 0.10 0.11
Matches are distributed among these distances:
41 3 0.04
42 2 0.02
43 74 0.88
44 4 0.05
45 1 0.01
ACGTcount: A:0.33, C:0.26, G:0.14, T:0.27
Consensus pattern (43 bp):
TCTTACACGTAATCACATATAAATGCCAATGTCCCAGACATGG
Found at i:67283658 original size:19 final size:19
Alignment explanation
Indices: 67283634--67283677 Score: 88
Period size: 19 Copynumber: 2.3 Consensus size: 19
67283624 AAGTGGGCCC
67283634 TTGGCCCATTGGCCCGTTT
1 TTGGCCCATTGGCCCGTTT
67283653 TTGGCCCATTGGCCCGTTT
1 TTGGCCCATTGGCCCGTTT
67283672 TTGGCC
1 TTGGCC
67283678 TATTAAGCCT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.05, C:0.32, G:0.27, T:0.36
Consensus pattern (19 bp):
TTGGCCCATTGGCCCGTTT
Found at i:67290706 original size:27 final size:26
Alignment explanation
Indices: 67290658--67290717 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
67290648 GCGAGGCTGC
*
67290658 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
67290685 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
*
67290711 CATATAT
1 CAGATAT
67290718 ATATATGTGG
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.35, C:0.20, G:0.22, T:0.23
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:67302576 original size:15 final size:15
Alignment explanation
Indices: 67302558--67302592 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
67302548 GAAAGCTTGA
67302558 TGTTGGATTTATATG
1 TGTTGGATTTATATG
**
67302573 TGTTGTCTTTATATG
1 TGTTGGATTTATATG
67302588 TGTTG
1 TGTTG
67302593 TCTTTGAATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.14, C:0.03, G:0.26, T:0.57
Consensus pattern (15 bp):
TGTTGGATTTATATG
Found at i:67302593 original size:15 final size:15
Alignment explanation
Indices: 67302565--67302597 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
67302555 TGATGTTGGA
67302565 TTTATATGTGTTGTC
1 TTTATATGTGTTGTC
67302580 TTTATATGTGTTGTC
1 TTTATATGTGTTGTC
67302595 TTT
1 TTT
67302598 GAATTTTTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.12, C:0.06, G:0.18, T:0.64
Consensus pattern (15 bp):
TTTATATGTGTTGTC
Found at i:67316458 original size:46 final size:47
Alignment explanation
Indices: 67316339--67316467 Score: 215
Period size: 47 Copynumber: 2.8 Consensus size: 47
67316329 GGTTGAGCAT
* *
67316339 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAGTGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAGCGC
67316386 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-CGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAGCGC
* *
67316432 CCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
67316468 GCGGGTTACA
Statistics
Matches: 78, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
46 35 0.45
47 43 0.55
ACGTcount: A:0.19, C:0.22, G:0.30, T:0.29
Consensus pattern (47 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAGCGC
Found at i:67326134 original size:46 final size:46
Alignment explanation
Indices: 67326076--67326230 Score: 258
Period size: 46 Copynumber: 3.3 Consensus size: 46
67326066 CAGCTAACAT
67326076 GCATGGACGGCATTAATGATGCTAGTGAAGCCTTAAAGAAAAGCAA
1 GCATGGACGGCATTAATGATGCTAGTGAAGCCTTAAAGAAAAGCAA
*
67326122 GCATGGATGGCATTAATGATGCTAGTGAAGCCTTAAAGAAAAGCAA
1 GCATGGACGGCATTAATGATGCTAGTGAAGCCTTAAAGAAAAGCAA
*
67326168 GCATGGACGGCATTAATGATGCT-GCTGAAGCCTTAAAGAAAAAGCAT
1 GCATGGACGGCATTAATGATGCTAG-TGAAGCCTTAAAG-AAAAGCAA
*
67326215 GCATGGACAGCATTAA
1 GCATGGACGGCATTAA
67326231 AGGAGCTACT
Statistics
Matches: 103, Mismatches: 4, Indels: 3
0.94 0.04 0.03
Matches are distributed among these distances:
45 1 0.01
46 80 0.78
47 22 0.21
ACGTcount: A:0.38, C:0.15, G:0.26, T:0.21
Consensus pattern (46 bp):
GCATGGACGGCATTAATGATGCTAGTGAAGCCTTAAAGAAAAGCAA
Found at i:67329002 original size:42 final size:42
Alignment explanation
Indices: 67328897--67329053 Score: 124
Period size: 43 Copynumber: 3.7 Consensus size: 42
67328887 CCAAACCCCA
* * * * *
67328897 AACGTCCCA-AATATGGTATTACATGTAATCAAATATCGAT-AC
1 AACGTCCCAGAA-GTGGTCTTACACGAAATCAAATAT-GATGCC
67328939 AACTGTCCCAGATAG-GGTCTTACACGAAATCAAATATGATGCC
1 AAC-GTCCCAGA-AGTGGTCTTACACGAAATCAAATATGATGCC
* * * *
67328982 AACGTCCCAGACGTGGTCTTACATGTAAATTATAAGT-CGATGCC
1 AACGTCCCAGAAGTGGTCTTACACG-AAATCA-AA-TATGATGCC
* *
67329026 AACGTCCCAGATGTAGTCTTACACGAAA
1 AACGTCCCAGAAGTGGTCTTACACGAAA
67329054 ACACATATCG
Statistics
Matches: 95, Mismatches: 12, Indels: 15
0.78 0.10 0.12
Matches are distributed among these distances:
41 1 0.01
42 24 0.25
43 37 0.39
44 31 0.33
45 2 0.02
ACGTcount: A:0.35, C:0.22, G:0.17, T:0.25
Consensus pattern (42 bp):
AACGTCCCAGAAGTGGTCTTACACGAAATCAAATATGATGCC
Found at i:67334974 original size:39 final size:39
Alignment explanation
Indices: 67334920--67335098 Score: 225
Period size: 39 Copynumber: 4.5 Consensus size: 39
67334910 TAATGGAGCA
*
67334920 TTATATCCGGGCTAAGTCCTGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
** *
67334959 TTATATCTAGGCTAAGTCCCGAAGGCATTCGTACTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* *
67334998 TTATATCCGGGTTAAGCCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* * * * *
67335037 TTATATCCGGGTTAAAGTCCCGCAGGC-TTTGTGATGGTA
1 TTATATCCGGGCT-AAGTCCCGAAGGCATTCGTGCTGGTG
67335076 TTATATCCGGGCTTAAAGTCCCG
1 TTATATCCGGGC-T-AAGTCCCG
67335099 CTTGCTTTGT
Statistics
Matches: 123, Mismatches: 15, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
39 102 0.83
40 21 0.17
ACGTcount: A:0.20, C:0.21, G:0.28, T:0.31
Consensus pattern (39 bp):
TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
Found at i:67341675 original size:40 final size:39
Alignment explanation
Indices: 67341489--67341664 Score: 237
Period size: 39 Copynumber: 4.5 Consensus size: 39
67341479 AATGGAGAAT
*
67341489 TATCCGGGCTAAGTCCTGAAGGCATTCGTGCTGGTGTTA
1 TATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTA
*
67341528 TATCCGGGCTAAGTCTCGAAGGCATTCGTGCTGGTGTTA
1 TATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTA
* * * *
67341567 TATCTGGGTTAAGCCCCAAAGGCATTCGTGCTGGTGTTA
1 TATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTA
* * *
67341606 TATCCGGGCTAAAGTCCCGCAGGC-TTTGTGCTGGTATTA
1 TATCCGGGCT-AAGTCCCGAAGGCATTCGTGCTGGTGTTA
67341645 TATCCGGGCTTAAAGTCCCG
1 TATCCGGGC-T-AAGTCCCG
67341665 CATGCTTTGT
Statistics
Matches: 121, Mismatches: 14, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
39 101 0.83
40 20 0.17
ACGTcount: A:0.19, C:0.22, G:0.29, T:0.30
Consensus pattern (39 bp):
TATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTA
Found at i:67354397 original size:68 final size:68
Alignment explanation
Indices: 67354325--67354500 Score: 166
Period size: 68 Copynumber: 2.6 Consensus size: 68
67354315 CATCATGTGT
** * *
67354325 ACAAGAGAGCTATGAGATACTATGTAGTAGCTAGGTCACATGTGTGA-T-ACGGGATGTAAC-CC
1 ACAAGAGAGCTATGAGATA-TAAAT-GTAGCTAGGTCACATGTGTGATTCAAGGGAAG-AACACC
67354387 ATGTAG
63 ATGTAG
* * * * *
67354393 ACAAGAGAGCTACGGGAGAGATAAATGTAGCTAGGTCGCATGTGTGATTCCAAGTGAAGGACACC
1 ACAAGAGAGCTA--TGAGATATAAATGTAGCTAGGTCACATGTGTGATT-CAAGGGAAGAACACC
67354458 ATGTAG
63 ATGTAG
*
67354464 ACAAGAGAGCTATGAG--ATAAAT-TGGCTAGGTCACATG
1 ACAAGAGAGCTATGAGATATAAATGTAGCTAGGTCACATG
67354501 GGTGGTACTA
Statistics
Matches: 90, Mismatches: 12, Indels: 14
0.78 0.10 0.12
Matches are distributed among these distances:
66 13 0.14
67 6 0.07
68 32 0.36
69 7 0.08
70 7 0.08
71 25 0.28
ACGTcount: A:0.34, C:0.15, G:0.29, T:0.22
Consensus pattern (68 bp):
ACAAGAGAGCTATGAGATATAAATGTAGCTAGGTCACATGTGTGATTCAAGGGAAGAACACCATG
TAG
Found at i:67359218 original size:16 final size:16
Alignment explanation
Indices: 67359194--67359248 Score: 83
Period size: 16 Copynumber: 3.4 Consensus size: 16
67359184 TGAATTATTG
* *
67359194 ATTATAGCTCTATTCC
1 ATTACAGCTCTATTCA
67359210 ATTACAGCTCTATTCA
1 ATTACAGCTCTATTCA
*
67359226 ATTACAGCCCTATTCA
1 ATTACAGCTCTATTCA
67359242 ATTACAG
1 ATTACAG
67359249 GGAACCAAAC
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 36 1.00
ACGTcount: A:0.31, C:0.25, G:0.07, T:0.36
Consensus pattern (16 bp):
ATTACAGCTCTATTCA
Found at i:67360891 original size:15 final size:15
Alignment explanation
Indices: 67360871--67360920 Score: 57
Period size: 15 Copynumber: 3.4 Consensus size: 15
67360861 TTTTTAAATT
67360871 TTTAAATGCAAAGCA
1 TTTAAATGCAAAGCA
* **
67360886 TTTAAAT-TAAATAA
1 TTTAAATGCAAAGCA
*
67360900 ATTAAATGCAAAGCA
1 TTTAAATGCAAAGCA
67360915 TTTAAA
1 TTTAAA
67360921 GGATAATGTT
Statistics
Matches: 26, Mismatches: 8, Indels: 2
0.72 0.22 0.06
Matches are distributed among these distances:
14 10 0.38
15 16 0.62
ACGTcount: A:0.52, C:0.08, G:0.08, T:0.32
Consensus pattern (15 bp):
TTTAAATGCAAAGCA
Found at i:67362339 original size:10 final size:9
Alignment explanation
Indices: 67362326--67362377 Score: 50
Period size: 10 Copynumber: 5.3 Consensus size: 9
67362316 TTAAAAAAAT
67362326 TAATTTCTTA
1 TAATTT-TTA
*
67362336 TAATTCTTAA
1 TAATT-TTTA
67362346 TAATTTTATA
1 TAATTTT-TA
67362356 TATATTTTTA
1 TA-ATTTTTA
*
67362366 TAAATTTTA
1 TAATTTTTA
67362375 TAA
1 TAA
67362378 CAATTTAAAA
Statistics
Matches: 36, Mismatches: 3, Indels: 7
0.78 0.07 0.15
Matches are distributed among these distances:
9 11 0.31
10 19 0.53
11 6 0.17
ACGTcount: A:0.38, C:0.04, G:0.00, T:0.58
Consensus pattern (9 bp):
TAATTTTTA
Found at i:67363692 original size:17 final size:16
Alignment explanation
Indices: 67363639--67363683 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 16
67363629 TTTATTGTGA
* * *
67363639 TTTAAATTATTTCAAG
1 TTTAAATAATTTTAGG
*
67363655 TTAAAATAATTTTAGG
1 TTTAAATAATTTTAGG
67363671 TTTAAATAATTTT
1 TTTAAATAATTTT
67363684 GGAATTTAAG
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.40, C:0.02, G:0.07, T:0.51
Consensus pattern (16 bp):
TTTAAATAATTTTAGG
Found at i:67370412 original size:93 final size:93
Alignment explanation
Indices: 67370305--67370475 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
67370295 GCCCCTAAGT
* *
67370305 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
67370370 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * *
67370398 GAACTCGGACTCAACTCAACGAGTTCGGATATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
67370463 CGAGTTCGGATGC
66 CGAGTTCGGATGC
67370476 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:67370491 original size:46 final size:46
Alignment explanation
Indices: 67370300--67370477 Score: 209
Period size: 46 Copynumber: 3.8 Consensus size: 46
67370290 AACTCGCCCC
* ** *
67370300 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCGCATCCA
* *
67370346 TAAGTGAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATG-CTCG---CATCCA
* * **
67370394 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGATATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCGCATCCA
67370439 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC
67370478 AACCATCCTA
Statistics
Matches: 109, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 66 0.61
47 31 0.28
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCGCATCCA
Found at i:67370929 original size:30 final size:30
Alignment explanation
Indices: 67370895--67370954 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
67370885 ATTTAATACG
67370895 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
67370925 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
67370955 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:67388929 original size:39 final size:39
Alignment explanation
Indices: 67388843--67389038 Score: 177
Period size: 39 Copynumber: 5.0 Consensus size: 39
67388833 ACTTGAAACC
** *
67388843 AATTACCAGCAC-AAGCCTGCGGGAATTTAAACCCGG-TAT
1 AATT-CCAGCACGAAGCCTGC-GGACCTTAAGCCCGGATAT
* * * *
67388882 AATACCAGCTCGAAGCCTGCGGGA-CTTTAGCCCGGACAT
1 AATTCCAGCACGAAGCCTGC-GGACCTTAAGCCCGGATAT
* * * *
67388921 ATTTCCAGCACGTAGCCTACGGACCTTAAGTCCGGATAT
1 AATTCCAGCACGAAGCCTGCGGACCTTAAGCCCGGATAT
*
67388960 AATTCCAGCAC-ATAGCCTGCGGACCTTAAGTCCGGATAT
1 AATTCCAGCACGA-AGCCTGCGGACCTTAAGCCCGGATAT
* * *
67388999 AATTCCAGCAC-ATAGTCTGCGGACCCTAAGTCCGGATAT
1 AATTCCAGCACGA-AGCCTGCGGACCTTAAGCCCGGATAT
67389038 A
1 A
67389039 CATCACTGAA
Statistics
Matches: 134, Mismatches: 19, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
38 17 0.13
39 117 0.87
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (39 bp):
AATTCCAGCACGAAGCCTGCGGACCTTAAGCCCGGATAT
Found at i:67388968 original size:78 final size:78
Alignment explanation
Indices: 67388875--67389038 Score: 199
Period size: 78 Copynumber: 2.1 Consensus size: 78
67388865 GAATTTAAAC
* * * *
67388875 CCGG-TATAATACCAGCTCGA-AGCCTGCGGGA-CTTTAGCCCGGACATATTTCCAGCACGTAGC
1 CCGGATATAATACCAGCAC-ATAGCCTGC-GGACCTTAAGCCCGGACATAATTCCAGCACATAGC
*
67388937 CTACGGACCTTAAGT
64 CTACGGACCCTAAGT
* * * *
67388952 CCGGATATAATTCCAGCACATAGCCTGCGGACCTTAAGTCCGGATATAATTCCAGCACATAGTCT
1 CCGGATATAATACCAGCACATAGCCTGCGGACCTTAAGCCCGGACATAATTCCAGCACATAGCCT
*
67389017 GCGGACCCTAAGT
66 ACGGACCCTAAGT
67389030 CCGGATATA
1 CCGGATATA
67389039 CATCACTGAA
Statistics
Matches: 74, Mismatches: 10, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
77 8 0.11
78 66 0.89
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.23
Consensus pattern (78 bp):
CCGGATATAATACCAGCACATAGCCTGCGGACCTTAAGCCCGGACATAATTCCAGCACATAGCCT
ACGGACCCTAAGT
Found at i:67390893 original size:52 final size:50
Alignment explanation
Indices: 67390773--67390895 Score: 149
Period size: 50 Copynumber: 2.4 Consensus size: 50
67390763 GCATTTAAAA
* * *
67390773 AAGTCATGCATTATGTAACTCTCTTGTTAGTTAAGTTTTCACCATACATT
1 AAGTCATGCATTATGTAACTCCCATGTTAGTTAAGTTTGCACCATACATT
* * *
67390823 ATGACATGCATTATGTAACTCCCATGTTAGTTAAAGTTTGCATCATTA-ATTT
1 AAGTCATGCATTATGTAACTCCCATGTTAGTT-AAGTTTGCACCA-TACA-TT
*
67390875 AAGTCATGCATTAAGTAACTC
1 AAGTCATGCATTATGTAACTC
67390896 ATTTGTTCAT
Statistics
Matches: 61, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
50 28 0.46
51 11 0.18
52 22 0.36
ACGTcount: A:0.31, C:0.17, G:0.13, T:0.39
Consensus pattern (50 bp):
AAGTCATGCATTATGTAACTCCCATGTTAGTTAAGTTTGCACCATACATT
Found at i:67394024 original size:25 final size:25
Alignment explanation
Indices: 67393993--67394042 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
67393983 TTTAACTACA
*
67393993 AAGTTTCCACATTTCACAATTTAAT
1 AAGTTTCCACATTGCACAATTTAAT
67394018 AAGTTTCCACATTGCACAATTTAAT
1 AAGTTTCCACATTGCACAATTTAAT
67394043 CCCTAATTTG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.36, C:0.20, G:0.06, T:0.38
Consensus pattern (25 bp):
AAGTTTCCACATTGCACAATTTAAT
Found at i:67394114 original size:21 final size:20
Alignment explanation
Indices: 67394086--67394124 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
67394076 CAAAACTTGT
67394086 ATAACTATCATCAAACATTC
1 ATAACTATCATCAAACATTC
*
67394106 ATAATCTATCATTAAACAT
1 ATAA-CTATCATCAAACAT
67394125 CAAAATACTC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.46, C:0.21, G:0.00, T:0.33
Consensus pattern (20 bp):
ATAACTATCATCAAACATTC
Found at i:67395755 original size:46 final size:45
Alignment explanation
Indices: 67395618--67395755 Score: 138
Period size: 46 Copynumber: 3.0 Consensus size: 45
67395608 GGGCTATTGT
*
67395618 GAGCTAGTGTAAGACATGTCTGGGAC-TGCATCGGCCAC-ATTG-TGA
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGG-CACGA--GACGA
* *
67395663 GAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCACTGAGACGA
1 GAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCAC-GAGACGA
* * *
67395711 GTGCTAGTGTGAGACATGTCTGGGACATGCATCGGCTTCGAGACG
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGC-ACGAGACG
67395756 TAAGTCAATG
Statistics
Matches: 78, Mismatches: 8, Indels: 13
0.79 0.08 0.13
Matches are distributed among these distances:
45 13 0.17
46 25 0.32
47 19 0.24
48 20 0.26
49 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.33, T:0.22
Consensus pattern (45 bp):
GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCACGAGACGA
Found at i:67406407 original size:125 final size:126
Alignment explanation
Indices: 67406184--67406434 Score: 441
Period size: 125 Copynumber: 2.0 Consensus size: 126
67406174 ATAAATCATA
*
67406184 ATTACACTCTAATATCAATAACATAAAGACCTTAAAGTAGACACCGTACTTTCTTTCGCCTTCCT
1 ATTACACTCTAATATCAATAACATAAAGACCTTAAAGTAGACACCGTACTTTCTTCCGCCTTCCT
* *
67406249 AACCTCTTCAAGGTAGAGAAGTCAGTTCATCTTCTAATGTTTGGTCTCACCACAACAAAAG
66 AACCTCTTCAAGGTAGACAAGTCAGTTCATCTTCTAATATTTGGTCTCACCACAACAAAAG
* * *
67406310 ATTACACTCTAATATCAATAACATAAAGATC-TGAAGTAGACACCTTACTTTCTTCCGCCTTCCT
1 ATTACACTCTAATATCAATAACATAAAGACCTTAAAGTAGACACCGTACTTTCTTCCGCCTTCCT
67406374 AACCTCTTCAAGGTAGACAAGTCAGTTCATCTTCTAATATTTGGTCTCACCACAACAAAAG
66 AACCTCTTCAAGGTAGACAAGTCAGTTCATCTTCTAATATTTGGTCTCACCACAACAAAAG
67406435 CTCTTACTTT
Statistics
Matches: 119, Mismatches: 6, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
125 89 0.75
126 30 0.25
ACGTcount: A:0.33, C:0.25, G:0.11, T:0.30
Consensus pattern (126 bp):
ATTACACTCTAATATCAATAACATAAAGACCTTAAAGTAGACACCGTACTTTCTTCCGCCTTCCT
AACCTCTTCAAGGTAGACAAGTCAGTTCATCTTCTAATATTTGGTCTCACCACAACAAAAG
Found at i:67406702 original size:36 final size:36
Alignment explanation
Indices: 67406655--67406729 Score: 150
Period size: 36 Copynumber: 2.1 Consensus size: 36
67406645 TTGCTTTACT
67406655 AATTTCGCTCATGTTAAAATTACAGACAAATTGACA
1 AATTTCGCTCATGTTAAAATTACAGACAAATTGACA
67406691 AATTTCGCTCATGTTAAAATTACAGACAAATTGACA
1 AATTTCGCTCATGTTAAAATTACAGACAAATTGACA
67406727 AAT
1 AAT
67406730 GCTATCTAAT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 39 1.00
ACGTcount: A:0.43, C:0.16, G:0.11, T:0.31
Consensus pattern (36 bp):
AATTTCGCTCATGTTAAAATTACAGACAAATTGACA
Found at i:67407938 original size:23 final size:22
Alignment explanation
Indices: 67407899--67407951 Score: 65
Period size: 22 Copynumber: 2.4 Consensus size: 22
67407889 TAAAAAATAA
67407899 ATATTATTTAAATATTTAAATT
1 ATATTATTTAAATATTTAAATT
*
67407921 ATATT-TTATAAATAATTTATATT
1 ATATTATT-TAAAT-ATTTAAATT
67407944 AT-TTATTT
1 ATATTATTT
67407952 TTTGTATATA
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
21 2 0.07
22 13 0.48
23 12 0.44
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (22 bp):
ATATTATTTAAATATTTAAATT
Found at i:67413002 original size:32 final size:31
Alignment explanation
Indices: 67412946--67413005 Score: 84
Period size: 32 Copynumber: 1.9 Consensus size: 31
67412936 ATATTCTATC
*
67412946 AATTTAATTTTATTATATAAAAAATTTAATA
1 AATTTAATTTTAATATATAAAAAATTTAATA
* *
67412977 AATTTAACTTTTAATATTTACAAAATTTA
1 AATTTAA-TTTTAATATATAAAAAATTTA
67413006 TCACTTTAAC
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
31 7 0.28
32 18 0.72
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (31 bp):
AATTTAATTTTAATATATAAAAAATTTAATA
Found at i:67417252 original size:21 final size:21
Alignment explanation
Indices: 67417226--67417269 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
67417216 CCAATATGTC
67417226 CCTTTCATCTCGAGTATTCCT
1 CCTTTCATCTCGAGTATTCCT
67417247 CCTTTCATCTCGAGTATTCCT
1 CCTTTCATCTCGAGTATTCCT
67417268 CC
1 CC
67417270 ATTTGAGTAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.14, C:0.36, G:0.09, T:0.41
Consensus pattern (21 bp):
CCTTTCATCTCGAGTATTCCT
Found at i:67417442 original size:46 final size:45
Alignment explanation
Indices: 67417375--67417549 Score: 199
Period size: 46 Copynumber: 3.8 Consensus size: 45
67417365 TGTAACCCGC
67417375 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGC-TTCGCAT
* * *
67417421 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--GCTTCGCAT
* *** * * *
67417467 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTTGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGGC-TTCGCAT
*
67417514 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
67417550 ATGCCCAAAT
Statistics
Matches: 106, Mismatches: 18, Indels: 10
0.79 0.13 0.07
Matches are distributed among these distances:
45 1 0.01
46 70 0.66
47 33 0.31
48 2 0.02
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCTTCGCAT
Found at i:67417495 original size:93 final size:93
Alignment explanation
Indices: 67417383--67417554 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
67417373 GCCCATAAGT
* *
67417383 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
67417448 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
* *
67417476 GAACTCGGACTCAACTCAACGAGTTTGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
67417541 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
67417555 CAAATATCCT
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:67417569 original size:46 final size:44
Alignment explanation
Indices: 67417380--67417569 Score: 118
Period size: 46 Copynumber: 4.1 Consensus size: 44
67417370 CCCGCCCATA
* ** ** **
67417380 AGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATCC-T
* *
67417425 AAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA---A-ATC-CT
* * * *
67417475 --CGAACTCGGACTCAACTCAACGAGTTTGGACATTCGC--ATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCCCAAATCC-T
67417518 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCC-AA-ATCCT
67417565 AGTGA
1 AGTGA
67417570 CATGTCACTT
Statistics
Matches: 112, Mismatches: 17, Indels: 30
0.70 0.11 0.19
Matches are distributed among these distances:
42 1 0.01
43 4 0.04
44 4 0.04
46 64 0.57
47 27 0.24
48 4 0.04
49 3 0.03
50 4 0.04
51 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.22
Consensus pattern (44 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATCCT
Found at i:67421945 original size:37 final size:37
Alignment explanation
Indices: 67421886--67422031 Score: 238
Period size: 37 Copynumber: 3.9 Consensus size: 37
67421876 AGCTCAGACG
* *
67421886 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
67421923 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* * *
67421960 TAATCTCCACATGTAGTCATCAGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
67421997 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
67422032 ATATATTTCC
Statistics
Matches: 102, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 102 1.00
ACGTcount: A:0.27, C:0.31, G:0.18, T:0.24
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:67422245 original size:47 final size:47
Alignment explanation
Indices: 67422194--67422426 Score: 367
Period size: 47 Copynumber: 5.0 Consensus size: 47
67422184 TTTCACACTA
* * * *
67422194 GCCATTCAGCTTTACCACATATATGCATGTTCATATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
* *
67422241 GCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
67422288 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
67422335 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
* * * **
67422382 GCCATTCGGCCTTGTCTCATATATACACATTCACATTCATCACAT
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACAT
67422427 AAAATCCTAA
Statistics
Matches: 173, Mismatches: 13, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 173 1.00
ACGTcount: A:0.26, C:0.29, G:0.12, T:0.33
Consensus pattern (47 bp):
GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
Found at i:67422258 original size:22 final size:22
Alignment explanation
Indices: 67422232--67422354 Score: 67
Period size: 22 Copynumber: 5.3 Consensus size: 22
67422222 GTTCATATTC
67422232 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* *
67422254 ATCACACATAT-G-CATGCTC-ACATT
1 AT--CACAT-TGGCCAT--TCGGCCTT
67422278 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
* * *
67422301 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
67422325 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
67422348 ATCACAT
1 ATCACAT
67422355 ATATGCATGT
Statistics
Matches: 75, Mismatches: 10, Indels: 32
0.64 0.09 0.27
Matches are distributed among these distances:
22 22 0.29
23 19 0.25
24 19 0.25
25 15 0.20
ACGTcount: A:0.25, C:0.30, G:0.13, T:0.32
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Done.