Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 209 of 349
Found at i:67428225 original size:46 final size:46
Alignment explanation
Indices: 67428170--67428333 Score: 167
Period size: 46 Copynumber: 3.5 Consensus size: 46
67428160 TATTTGGGCA
*
67428170 TCCGAGCTCGTTGAGTCGAGTCTGAGTTCACTTATGGATGCGAATG
1 TCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATG
* * *
67428216 TCTGAGCTCGTTGAGTTGAGTCTGAG-T---TTGTGAGATG-TAACTAGG
1 TCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATG-GATGCGAA-T--G
* *
67428261 CATCCGAGCTCGTTGAATTGAGTCTGATTTCACTTATGGATGCGAATG
1 --TCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATG
* *
67428309 CCCGAACTCGTTGAGTTGAGTCTGA
1 TCCGAGCTCGTTGAGTTGAGTCTGA
67428334 ATTCGTGAGA
Statistics
Matches: 95, Mismatches: 12, Indels: 22
0.74 0.09 0.17
Matches are distributed among these distances:
42 6 0.06
43 5 0.05
45 2 0.02
46 46 0.48
47 23 0.24
48 2 0.02
50 5 0.05
51 6 0.06
ACGTcount: A:0.21, C:0.18, G:0.29, T:0.32
Consensus pattern (46 bp):
TCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATG
Found at i:67428282 original size:47 final size:47
Alignment explanation
Indices: 67428219--67428385 Score: 166
Period size: 47 Copynumber: 3.6 Consensus size: 47
67428209 GCGAATGTCT
67428219 GAGCTCGTTGAGTTGAGTCTGAGTTTGTGAGATGTAACTAGGCATCC
1 GAGCTCGTTGAGTTGAGTCTGAGTTTGTGAGATGTAACTAGGCATCC
* * * *
67428266 GAGCTCGTTGAATTGAGTCTGA-TTTCACTTATGGATGCGAA-T--GC--CC
1 GAGCTCGTTGAGTTGAGTCTGAGTTT--GTGA--GATG-TAACTAGGCATCC
* * * *
67428312 GAACTCGTTGAGTTGAGTCTGAATTCGTGAGATGTAACTAGGCATCT
1 GAGCTCGTTGAGTTGAGTCTGAGTTTGTGAGATGTAACTAGGCATCC
*
67428359 GAGCTCGTTGAGTTGAGTCCGAGTTTG
1 GAGCTCGTTGAGTTGAGTCTGAGTTTG
67428386 CTTATGGGCG
Statistics
Matches: 94, Mismatches: 15, Indels: 22
0.72 0.11 0.17
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 4 0.04
46 25 0.27
47 47 0.50
48 4 0.04
50 5 0.05
51 2 0.02
ACGTcount: A:0.22, C:0.16, G:0.30, T:0.32
Consensus pattern (47 bp):
GAGCTCGTTGAGTTGAGTCTGAGTTTGTGAGATGTAACTAGGCATCC
Found at i:67428325 original size:93 final size:93
Alignment explanation
Indices: 67428166--67428392 Score: 346
Period size: 93 Copynumber: 2.4 Consensus size: 93
67428156 AGGATATTTG
* * * *
67428166 GGCATCCGAGCTCGTTGAGTCGAGTCTGAGTTCACTTATGGATGCGAATGTCTGAGCTCGTTGAG
1 GGCATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAG
* *
67428231 TTGAGTCTGAGTTTGTGAGATGTAACTA
66 TTGAGTCTGAATTCGTGAGATGTAACTA
* *
67428259 GGCATCCGAGCTCGTTGAATTGAGTCTGATTTCACTTATGGATGCGAATGCCCGAACTCGTTGAG
1 GGCATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAG
67428324 TTGAGTCTGAATTCGTGAGATGTAACTA
66 TTGAGTCTGAATTCGTGAGATGTAACTA
* * **
67428352 GGCATCTGAGCTCGTTGAGTTGAGTCCGAGTTTGCTTATGG
1 GGCATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGG
67428393 GCGGGTTACA
Statistics
Matches: 120, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 120 1.00
ACGTcount: A:0.21, C:0.17, G:0.30, T:0.32
Consensus pattern (93 bp):
GGCATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAG
TTGAGTCTGAATTCGTGAGATGTAACTA
Found at i:67434020 original size:44 final size:44
Alignment explanation
Indices: 67433957--67434046 Score: 180
Period size: 44 Copynumber: 2.0 Consensus size: 44
67433947 AAATGGAGAG
67433957 AGTAAGCTACCGAGACTTCAAAATTACGAAGAACATTAAAAACA
1 AGTAAGCTACCGAGACTTCAAAATTACGAAGAACATTAAAAACA
67434001 AGTAAGCTACCGAGACTTCAAAATTACGAAGAACATTAAAAACA
1 AGTAAGCTACCGAGACTTCAAAATTACGAAGAACATTAAAAACA
67434045 AG
1 AG
67434047 GCTTGGGAGA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 46 1.00
ACGTcount: A:0.50, C:0.18, G:0.14, T:0.18
Consensus pattern (44 bp):
AGTAAGCTACCGAGACTTCAAAATTACGAAGAACATTAAAAACA
Found at i:67435097 original size:45 final size:45
Alignment explanation
Indices: 67434988--67435152 Score: 151
Period size: 45 Copynumber: 3.6 Consensus size: 45
67434978 TAATTTGTTT
*
67434988 GCCAGTGTAAGACCATGTCCGGGACATGGCATCGGTATTGAGACA-A
1 GCCAGTGTAAGACCATGTCCGGGACAT-GCATCGG-ATCGAGACATA
*
67435034 GTGCCAGTGTAAGA-CATGTCCGGGACATGCATCGGCCTCGAGACATAA
1 --GCCAGTGTAAGACCATGTCCGGGACATGCATCGG-ATCGAGACAT-A
* * * * *
67435082 G-CAGTGTAAGA-CATGTCTGAGACTTGCATCGGTTACAAGACAT-
1 GCCAGTGTAAGACCATGTCCGGGACATGCATCGGAT-CGAGACATA
* *
67435125 GTCAGTGTAAGACCATGTCTGGGACATG
1 GCCAGTGTAAGACCATGTCCGGGACATG
67435153 GCATTGACAT
Statistics
Matches: 102, Mismatches: 10, Indels: 13
0.82 0.08 0.10
Matches are distributed among these distances:
43 1 0.01
44 11 0.11
45 48 0.47
46 15 0.15
47 14 0.14
48 13 0.13
ACGTcount: A:0.28, C:0.21, G:0.29, T:0.22
Consensus pattern (45 bp):
GCCAGTGTAAGACCATGTCCGGGACATGCATCGGATCGAGACATA
Found at i:67435185 original size:50 final size:49
Alignment explanation
Indices: 67435128--67435305 Score: 161
Period size: 50 Copynumber: 3.6 Consensus size: 49
67435118 AAGACATGTC
*
67435128 AGTGTAAGACCATGTCTGGGACATGGCAT-TGACATGGATAGGCA-AGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCAG-CAT-G-TAGGCAGAGAGCT
* *
67435178 AGTGTAAGACCATGTCTGGGACATGACATCAGCATGTAGGTATGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCATGTAGGCA-GAGAGCT
* * * * * * *
67435228 AGTGTAAGAACATTTCTGGGACATGGTATCAGTC-TCG-ATG-AGGATATCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCAG-CAT-GTAGGCA-GAGAGCT
67435277 AGTGTAAGACCATGTCTGGG-CATGGCATC
1 AGTGTAAGACCATGTCTGGGACATGGCATC
67435306 GACAACTTAA
Statistics
Matches: 108, Mismatches: 15, Indels: 12
0.80 0.11 0.09
Matches are distributed among these distances:
48 13 0.12
49 24 0.22
50 68 0.63
51 3 0.03
ACGTcount: A:0.29, C:0.17, G:0.30, T:0.25
Consensus pattern (49 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCAGCATGTAGGCAGAGAGCT
Found at i:67438308 original size:43 final size:43
Alignment explanation
Indices: 67438260--67438350 Score: 182
Period size: 43 Copynumber: 2.1 Consensus size: 43
67438250 CAACAATACG
67438260 AAGTTAGAATATTACATTCGATCATCTCTTTAAGAGTTAGGAA
1 AAGTTAGAATATTACATTCGATCATCTCTTTAAGAGTTAGGAA
67438303 AAGTTAGAATATTACATTCGATCATCTCTTTAAGAGTTAGGAA
1 AAGTTAGAATATTACATTCGATCATCTCTTTAAGAGTTAGGAA
67438346 AAGTT
1 AAGTT
67438351 GATGATATCC
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 48 1.00
ACGTcount: A:0.37, C:0.11, G:0.16, T:0.35
Consensus pattern (43 bp):
AAGTTAGAATATTACATTCGATCATCTCTTTAAGAGTTAGGAA
Found at i:67446008 original size:39 final size:39
Alignment explanation
Indices: 67445949--67446027 Score: 122
Period size: 39 Copynumber: 2.0 Consensus size: 39
67445939 AATAGCCCAG
* *
67445949 CTATGGTCTTACACGAAGTCTTATATCGATGCCATATCC
1 CTATAGTCTTACACGAAGTCTCATATCGATGCCATATCC
* *
67445988 CTATAGTCTTACACGTAGTCTCATATTGATGCCATATCC
1 CTATAGTCTTACACGAAGTCTCATATCGATGCCATATCC
67446027 C
1 C
67446028 AGATATTGTC
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.25, C:0.27, G:0.14, T:0.34
Consensus pattern (39 bp):
CTATAGTCTTACACGAAGTCTCATATCGATGCCATATCC
Found at i:67448523 original size:24 final size:24
Alignment explanation
Indices: 67448496--67448550 Score: 92
Period size: 24 Copynumber: 2.3 Consensus size: 24
67448486 TTTGCTACAA
67448496 TATTGAGTGGCTTGGCCACAACGT
1 TATTGAGTGGCTTGGCCACAACGT
* *
67448520 TATTGAGTGGCTTGGCCATAATGT
1 TATTGAGTGGCTTGGCCACAACGT
67448544 TATTGAG
1 TATTGAG
67448551 CAGCATGTCC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.22, C:0.15, G:0.29, T:0.35
Consensus pattern (24 bp):
TATTGAGTGGCTTGGCCACAACGT
Found at i:67448649 original size:63 final size:63
Alignment explanation
Indices: 67448520--67448669 Score: 165
Period size: 63 Copynumber: 2.4 Consensus size: 63
67448510 GCCACAACGT
* * * * *
67448520 TATTGAGTGGCTTGGCCATAATGTTATTGAGCAGCATGTCCACAACGTGCAGCTCGTCTGTAA
1 TATTGAGTGGCTTGGCCATAACGTTATTGAGCAGCATGACCACAACGTGCAACTCATCTATAA
* * ** * * * *
67448583 TATTGAGTGACTTGGCCATAACGTTATTGAGTAGTTTGACCACAACTTTCAACTTATCTATGA
1 TATTGAGTGGCTTGGCCATAACGTTATTGAGCAGCATGACCACAACGTGCAACTCATCTATAA
* *
67448646 TATTAAGTGGCTTGGCCACAACGT
1 TATTGAGTGGCTTGGCCATAACGT
67448670 GGTGTGTCAT
Statistics
Matches: 71, Mismatches: 16, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
63 71 1.00
ACGTcount: A:0.26, C:0.19, G:0.22, T:0.33
Consensus pattern (63 bp):
TATTGAGTGGCTTGGCCATAACGTTATTGAGCAGCATGACCACAACGTGCAACTCATCTATAA
Found at i:67466803 original size:22 final size:22
Alignment explanation
Indices: 67466776--67466819 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
67466766 AAAAATGAAC
*
67466776 AAAATTAATAAAAATTTGATAT
1 AAAATTAATAAAAATTTAATAT
* *
67466798 AAAATTGATTAAAATTTAATAT
1 AAAATTAATAAAAATTTAATAT
67466820 TTTAATAATT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.57, C:0.00, G:0.05, T:0.39
Consensus pattern (22 bp):
AAAATTAATAAAAATTTAATAT
Found at i:67466839 original size:27 final size:27
Alignment explanation
Indices: 67466802--67466856 Score: 85
Period size: 27 Copynumber: 2.0 Consensus size: 27
67466792 TGATATAAAA
67466802 TTGATTAAAATTTAA-TATTTTAATAAT
1 TTGATTAAAATTTAATTATTTT-ATAAT
*
67466829 TTGATTGAAATTTAATTATTTTATAAT
1 TTGATTAAAATTTAATTATTTTATAAT
67466856 T
1 T
67466857 ATTATATTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
27 20 0.77
28 6 0.23
ACGTcount: A:0.40, C:0.00, G:0.05, T:0.55
Consensus pattern (27 bp):
TTGATTAAAATTTAATTATTTTATAAT
Found at i:67467661 original size:6 final size:6
Alignment explanation
Indices: 67467643--67467762 Score: 77
Period size: 6 Copynumber: 19.3 Consensus size: 6
67467633 AAGAAACATT
* *
67467643 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAGA ATTAG- GTGACAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA
* * * *
67467692 ATCAGA ATCAGT ATGAGGTA AT-AGA ATCAAA ATCAGA ATCAGT ATCAGGTA
1 ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A
*
67467743 A-CAGA ATCAAAA ATCAGA AT
1 ATCAGA ATC-AGA ATCAGA AT
67467763 GTGAATGCAA
Statistics
Matches: 89, Mismatches: 13, Indels: 24
0.71 0.10 0.19
Matches are distributed among these distances:
5 7 0.08
6 65 0.73
7 13 0.15
8 4 0.04
ACGTcount: A:0.48, C:0.13, G:0.18, T:0.20
Consensus pattern (6 bp):
ATCAGA
Found at i:67467688 original size:31 final size:31
Alignment explanation
Indices: 67467652--67467762 Score: 150
Period size: 31 Copynumber: 3.5 Consensus size: 31
67467642 TATCAGAACT
* * * *
67467652 AGAATCAGAATCAGAATCAGAATTAGGTGAC
1 AGAATCAAAATCAGAATCAGTATCAGGTAAC
* * *
67467683 AGAATCAGAATCAGAATCAGTATGAGGTAAT
1 AGAATCAAAATCAGAATCAGTATCAGGTAAC
67467714 AGAATCAAAATCAGAATCAGTATCAGGTAAC
1 AGAATCAAAATCAGAATCAGTATCAGGTAAC
67467745 AGAATCAAAAATCAGAAT
1 AGAATC-AAAATCAGAAT
67467763 GTGAATGCAA
Statistics
Matches: 72, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
31 61 0.85
32 11 0.15
ACGTcount: A:0.49, C:0.13, G:0.19, T:0.20
Consensus pattern (31 bp):
AGAATCAAAATCAGAATCAGTATCAGGTAAC
Found at i:67467947 original size:27 final size:27
Alignment explanation
Indices: 67467917--67467973 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
67467907 GTGATAGAGT
* *
67467917 CACCAG-AACAGATATTTGTGGCATAGC
1 CACCAGAAACAGATA-ATGTGGCAAAGC
*
67467944 CACCAGAAACAGGTAATGTGGCAAAGC
1 CACCAGAAACAGATAATGTGGCAAAGC
67467971 CAC
1 CAC
67467974 TTAACAGAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
27 19 0.73
28 7 0.27
ACGTcount: A:0.37, C:0.25, G:0.23, T:0.16
Consensus pattern (27 bp):
CACCAGAAACAGATAATGTGGCAAAGC
Found at i:67468160 original size:22 final size:21
Alignment explanation
Indices: 67468132--67468196 Score: 60
Period size: 22 Copynumber: 3.0 Consensus size: 21
67468122 GCAAATACGT
67468132 TTGGCACACAACCATAATCAGG
1 TTGGCACA-AACCATAATCAGG
* *
67468154 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACA-AACCATAAT-CAGG
*
67468176 TTGACACAAAGCCATAATCAG
1 TTGGCACAAA-CCATAATCAG
67468197 AAGGCTTTAA
Statistics
Matches: 34, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
21 3 0.09
22 29 0.85
23 2 0.06
ACGTcount: A:0.35, C:0.23, G:0.22, T:0.20
Consensus pattern (21 bp):
TTGGCACAAACCATAATCAGG
Found at i:67476536 original size:43 final size:44
Alignment explanation
Indices: 67476482--67476576 Score: 129
Period size: 43 Copynumber: 2.2 Consensus size: 44
67476472 GCCTCAGCGA
* * *
67476482 AGCAGATTGAAGTCACTAGTCTTATCTCCCTGAAGT-GCAGTAG
1 AGCAGACTGAAGTCACAAGTCTCATCTCCCTGAAGTCGCAGTAG
* * *
67476525 AGCAGACTGAAGTTACAAGTCTCATCTCCTTGAAGTCGCAGTGG
1 AGCAGACTGAAGTCACAAGTCTCATCTCCCTGAAGTCGCAGTAG
67476569 AGCAGACT
1 AGCAGACT
67476577 AAATGTATAG
Statistics
Matches: 45, Mismatches: 6, Indels: 1
0.87 0.12 0.02
Matches are distributed among these distances:
43 31 0.69
44 14 0.31
ACGTcount: A:0.28, C:0.22, G:0.24, T:0.25
Consensus pattern (44 bp):
AGCAGACTGAAGTCACAAGTCTCATCTCCCTGAAGTCGCAGTAG
Found at i:67476943 original size:44 final size:43
Alignment explanation
Indices: 67476841--67476956 Score: 115
Period size: 44 Copynumber: 2.7 Consensus size: 43
67476831 AACCACCAAG
** * *
67476841 CTTTAACCCCCTAAGCAGTAGGGTAACAAGCTGAAGTTTATAG
1 CTTTAACCCCCTAAGCAGTAGGGTAACAAGCCAAAGTTTAAAC
* * * * * *
67476884 ATATTATCGCTCTAAGCAATAGGGTAACAAGCCAAATTTTCAAAC
1 CT-TTAACCCCCTAAGCAGTAGGGTAACAAGCCAAAGTTT-AAAC
*
67476929 CTTTAACCCCCTAAGCAGTAGGATAACA
1 CTTTAACCCCCTAAGCAGTAGGGTAACA
67476957 GGTTGAGCTT
Statistics
Matches: 55, Mismatches: 16, Indels: 3
0.74 0.22 0.04
Matches are distributed among these distances:
43 1 0.02
44 51 0.93
45 3 0.05
ACGTcount: A:0.36, C:0.22, G:0.16, T:0.25
Consensus pattern (43 bp):
CTTTAACCCCCTAAGCAGTAGGGTAACAAGCCAAAGTTTAAAC
Found at i:67477145 original size:42 final size:42
Alignment explanation
Indices: 67477098--67477218 Score: 199
Period size: 41 Copynumber: 2.9 Consensus size: 42
67477088 TAAAAGCCAT
67477098 AGCAGATCTCCTTGAAGTTTCAGTGGAATTGATCGAAGCTAC
1 AGCAGATCTCCTTGAAGTTTCAGTGGAATTGATCGAAGCTAC
* *
67477140 AGCAGATCTCCTTGAAGTTTCAGTGG-ATTAAGCGAAGCTAC
1 AGCAGATCTCCTTGAAGTTTCAGTGGAATTGATCGAAGCTAC
* *
67477181 AGTAGATCTCCTTGAAGTTTCAGTGGAATTGATTGAAG
1 AGCAGATCTCCTTGAAGTTTCAGTGGAATTGATCGAAG
67477219 TCACGTGTCT
Statistics
Matches: 72, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
41 38 0.53
42 34 0.47
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.30
Consensus pattern (42 bp):
AGCAGATCTCCTTGAAGTTTCAGTGGAATTGATCGAAGCTAC
Found at i:67477197 original size:21 final size:21
Alignment explanation
Indices: 67477132--67477197 Score: 53
Period size: 21 Copynumber: 3.2 Consensus size: 21
67477122 GGAATTGATC
*
67477132 GAAGCTACAGCAGATCTCCTT
1 GAAGCTACAGTAGATCTCCTT
* * * ****
67477153 GAAGTTTCAGTGGAT-TAAGC
1 GAAGCTACAGTAGATCTCCTT
67477173 GAAGCTACAGTAGATCTCCTT
1 GAAGCTACAGTAGATCTCCTT
67477194 GAAG
1 GAAG
67477198 TTTCAGTGGA
Statistics
Matches: 29, Mismatches: 15, Indels: 2
0.63 0.33 0.04
Matches are distributed among these distances:
20 13 0.45
21 16 0.55
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (21 bp):
GAAGCTACAGTAGATCTCCTT
Found at i:67482728 original size:46 final size:46
Alignment explanation
Indices: 67482661--67482835 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
67482651 TGTAACCCGC
67482661 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
* * *
67482707 CCATAAGTGAACTCGAACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-C--GTTCGCAT
* * *
67482757 --TTCA-CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
*
67482800 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
67482836 ATGCTCAACC
Statistics
Matches: 107, Mismatches: 13, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 3 0.03
43 3 0.03
44 1 0.01
45 3 0.03
46 61 0.57
47 26 0.24
48 3 0.03
49 1 0.01
50 3 0.03
51 3 0.03
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
Found at i:67482781 original size:93 final size:93
Alignment explanation
Indices: 67482669--67482839 Score: 333
Period size: 93 Copynumber: 1.8 Consensus size: 93
67482659 GCCCATAAGT
67482669 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGAACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGAACTCAACTCAA
67482734 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
*
67482762 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGAACTCAACTCAA
67482827 CGAGTTCGGATGC
66 CGAGTTCGGATGC
67482840 TCAACCATCC
Statistics
Matches: 77, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
93 77 1.00
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGAACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:67485664 original size:12 final size:12
Alignment explanation
Indices: 67485647--67485673 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
67485637 TTTGGAACGA
67485647 CATAGCACAAGG
1 CATAGCACAAGG
67485659 CATAGCACAAGG
1 CATAGCACAAGG
67485671 CAT
1 CAT
67485674 GGAACATAGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.41, C:0.26, G:0.22, T:0.11
Consensus pattern (12 bp):
CATAGCACAAGG
Found at i:67486736 original size:2 final size:2
Alignment explanation
Indices: 67486729--67486755 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
67486719 CTGTAGTACC
67486729 GA GA GA GA GA GA GA GA GA GA GA GA GA G
1 GA GA GA GA GA GA GA GA GA GA GA GA GA G
67486756 TGACCTGGTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.52, T:0.00
Consensus pattern (2 bp):
GA
Found at i:67496206 original size:27 final size:26
Alignment explanation
Indices: 67496176--67496232 Score: 60
Period size: 26 Copynumber: 2.2 Consensus size: 26
67496166 AATACCTTTA
* * *
67496176 TAGGTGGAAAATTTACAAATTTACCCC
1 TAGGAGGAAAA-TTACAAATATACCAC
* *
67496203 TAGGAGTAAAATTACTAATATACCAC
1 TAGGAGGAAAATTACAAATATACCAC
67496229 TAGG
1 TAGG
67496233 GTTAAGGTTG
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
26 16 0.64
27 9 0.36
ACGTcount: A:0.40, C:0.16, G:0.16, T:0.28
Consensus pattern (26 bp):
TAGGAGGAAAATTACAAATATACCAC
Found at i:67507687 original size:20 final size:18
Alignment explanation
Indices: 67507644--67507688 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
67507634 AAATAACTCT
*
67507644 TTTTTTTATAATTCTGAC
1 TTTTTTTATAATTCTGTC
*
67507662 TTTTTTTATATATTCTTTC
1 TTTTTTTATA-ATTCTGTC
67507681 TTCTTTTT
1 TT-TTTTT
67507689 TACACGAATT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
18 10 0.43
19 8 0.35
20 5 0.22
ACGTcount: A:0.16, C:0.11, G:0.02, T:0.71
Consensus pattern (18 bp):
TTTTTTTATAATTCTGTC
Found at i:67510836 original size:52 final size:53
Alignment explanation
Indices: 67510774--67510979 Score: 144
Period size: 55 Copynumber: 3.8 Consensus size: 53
67510764 TTCCTTTTTA
* ** * * *
67510774 AACTTACCATTGTGATGTCTTGACATGGTCTTACGTGGTATCCTT-CCTTATG
1 AACTCACCATTGCCATGCCTTGACATGGTCTTACATGGGATCCTTGCCTTATG
* *
67510826 AACTCACCATTGCCATGCCTTGGCATGGTCTTACATGGGATCTTTGCCTTATAG
1 AACTCACCATTGCCATGCCTTGACATGGTCTTACATGGGATCCTTGCCTTAT-G
** * * *** * **** *
67510880 TAGTTTATCAACACCATGCCTTGACATGGTTTTACATAATTTCCTTGCCTTGTAG
1 -AACTCACCATTGCCATGCCTTGACATGGTCTTACATGGGATCCTTGCCTTAT-G
* * * * *
67510935 AACTTACCAATGCCATGCCTTGGCATGGTCTTACTTGGTATCCTT
1 AACTCACCATTGCCATGCCTTGACATGGTCTTACATGGGATCCTT
67510980 AAACCCTAAT
Statistics
Matches: 117, Mismatches: 34, Indels: 4
0.75 0.22 0.03
Matches are distributed among these distances:
52 37 0.32
53 6 0.05
54 35 0.30
55 39 0.33
ACGTcount: A:0.21, C:0.24, G:0.18, T:0.37
Consensus pattern (53 bp):
AACTCACCATTGCCATGCCTTGACATGGTCTTACATGGGATCCTTGCCTTATG
Found at i:67511345 original size:29 final size:30
Alignment explanation
Indices: 67511312--67511371 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
67511302 CGTTCCTTAA
67511312 CTCT-AACTTTGGCAAAATTACAATTTTGC
1 CTCTAAACTTTGGCAAAATTACAATTTTGC
* * * *
67511341 CTCTAAACTTTTGCATATTTACACTTTTGC
1 CTCTAAACTTTGGCAAAATTACAATTTTGC
67511371 C
1 C
67511372 CCAAGGCTCT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
29 4 0.15
30 22 0.85
ACGTcount: A:0.27, C:0.23, G:0.08, T:0.42
Consensus pattern (30 bp):
CTCTAAACTTTGGCAAAATTACAATTTTGC
Found at i:67515385 original size:68 final size:66
Alignment explanation
Indices: 67515313--67515484 Score: 170
Period size: 67 Copynumber: 2.6 Consensus size: 66
67515303 CATCATGTGT
* * * *
67515313 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTA-TG-TGTACACCA
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCA
67515376 TGTAG
62 TGTAG
** * *
67515381 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCA-GTGAAGGACACCATGT
67515446 AG
65 AG
* * * *
67515448 ACAAGAGAGCTACGAGATAAAT-TGGCTAGGTCACATG
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATG
67515485 GGTGGTACTG
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
64 24 0.27
65 3 0.03
66 17 0.19
67 32 0.36
68 13 0.15
ACGTcount: A:0.32, C:0.17, G:0.29, T:0.22
Consensus pattern (66 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCATGTA
G
Found at i:67515418 original size:64 final size:64
Alignment explanation
Indices: 67515337--67515520 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
67515327 AGACATTATG
* * *
67515337 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
67515401 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
67515466 AA
63 AA
* * * *
67515468 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACTATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGC
67515521 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 18 0.18
64 25 0.26
66 21 0.21
67 33 0.34
ACGTcount: A:0.29, C:0.16, G:0.31, T:0.24
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:67522998 original size:15 final size:14
Alignment explanation
Indices: 67522978--67523024 Score: 58
Period size: 15 Copynumber: 3.1 Consensus size: 14
67522968 GAAAATCGAG
67522978 TAAAGAAATCCAAGA
1 TAAAGAAA-CCAAGA
*
67522993 TAAAGAAACCCAGAA
1 TAAAGAAACCAAG-A
67523008 TAAAGAAACCTAAGA
1 TAAAGAAACC-AAGA
67523023 TA
1 TA
67523025 CAGTACTATG
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
14 4 0.14
15 22 0.79
16 2 0.07
ACGTcount: A:0.60, C:0.15, G:0.13, T:0.13
Consensus pattern (14 bp):
TAAAGAAACCAAGA
Found at i:67524091 original size:13 final size:13
Alignment explanation
Indices: 67524073--67524097 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
67524063 TAACCTTTTT
67524073 ATTTTGGTCATTC
1 ATTTTGGTCATTC
67524086 ATTTTGGTCATT
1 ATTTTGGTCATT
67524098 TTTGGTCACT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.12, G:0.16, T:0.56
Consensus pattern (13 bp):
ATTTTGGTCATTC
Found at i:67533345 original size:22 final size:21
Alignment explanation
Indices: 67533320--67533367 Score: 51
Period size: 22 Copynumber: 2.2 Consensus size: 21
67533310 TTTCACTAAA
*
67533320 ATTATTAACATATTTAATTTTT
1 ATTATT-ACATATCTAATTTTT
**
67533342 ATTAATTTTATATCTAATTTTT
1 ATT-ATTACATATCTAATTTTT
67533364 ATTA
1 ATTA
67533368 ATTTTGATCA
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
21 1 0.05
22 18 0.82
23 3 0.14
ACGTcount: A:0.35, C:0.04, G:0.00, T:0.60
Consensus pattern (21 bp):
ATTATTACATATCTAATTTTT
Found at i:67533348 original size:10 final size:10
Alignment explanation
Indices: 67533333--67533372 Score: 62
Period size: 10 Copynumber: 3.8 Consensus size: 10
67533323 ATTAACATAT
67533333 TTAATTTTTA
1 TTAATTTTTA
67533343 TTAATTTTATA
1 TTAATTTT-TA
67533354 TCTAATTTTTA
1 T-TAATTTTTA
67533365 TTAATTTT
1 TTAATTTT
67533373 GATCATTTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
10 15 0.54
11 6 0.21
12 7 0.25
ACGTcount: A:0.30, C:0.03, G:0.00, T:0.68
Consensus pattern (10 bp):
TTAATTTTTA
Found at i:67533368 original size:22 final size:22
Alignment explanation
Indices: 67533329--67533372 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
67533319 AATTATTAAC
*
67533329 ATATTTAATTTTTATTAATTTT
1 ATATCTAATTTTTATTAATTTT
67533351 ATATCTAATTTTTATTAATTTT
1 ATATCTAATTTTTATTAATTTT
67533373 GATCATTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.66
Consensus pattern (22 bp):
ATATCTAATTTTTATTAATTTT
Found at i:67541000 original size:42 final size:42
Alignment explanation
Indices: 67540941--67541025 Score: 170
Period size: 42 Copynumber: 2.0 Consensus size: 42
67540931 ATATGAAATG
67540941 TATGATTATTTTAGAAATAAGCCCGATAATGCTCCGTAATCA
1 TATGATTATTTTAGAAATAAGCCCGATAATGCTCCGTAATCA
67540983 TATGATTATTTTAGAAATAAGCCCGATAATGCTCCGTAATCA
1 TATGATTATTTTAGAAATAAGCCCGATAATGCTCCGTAATCA
67541025 T
1 T
67541026 TCAAATGTAT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.35, C:0.16, G:0.14, T:0.34
Consensus pattern (42 bp):
TATGATTATTTTAGAAATAAGCCCGATAATGCTCCGTAATCA
Found at i:67543274 original size:48 final size:48
Alignment explanation
Indices: 67543201--67543351 Score: 180
Period size: 48 Copynumber: 3.1 Consensus size: 48
67543191 AACTCAATAT
* ** *
67543201 ATATATCTCGCACCTGAAGTACTAATATCATTACCCGAACCCAAATCA
1 ATATATCTCGCACCTGAAGTGCTAATATCATGGCCCGAAACCAAATCA
* *
67543249 ATATATCTCGCACAC-GAAGTGCTAATATCATGGCCCAAAACCAAATAA
1 ATATATCTCGCAC-CTGAAGTGCTAATATCATGGCCCGAAACCAAATCA
* * *
67543297 ATGA-AGCTCGCACCTGAAGTGCCAATATCATGGCCCGAAGCCAAATCA
1 AT-ATATCTCGCACCTGAAGTGCTAATATCATGGCCCGAAACCAAATCA
*
67543345 ATGTATC
1 ATATATC
67543352 CCCTAATGAC
Statistics
Matches: 86, Mismatches: 13, Indels: 8
0.80 0.12 0.07
Matches are distributed among these distances:
47 1 0.01
48 83 0.97
49 2 0.02
ACGTcount: A:0.37, C:0.27, G:0.14, T:0.22
Consensus pattern (48 bp):
ATATATCTCGCACCTGAAGTGCTAATATCATGGCCCGAAACCAAATCA
Found at i:67545887 original size:13 final size:13
Alignment explanation
Indices: 67545869--67545897 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
67545859 AAGATACCAA
67545869 AAATGACCAAAAC
1 AAATGACCAAAAC
67545882 AAATGACCAAAAC
1 AAATGACCAAAAC
67545895 AAA
1 AAA
67545898 AAGATTGAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.66, C:0.21, G:0.07, T:0.07
Consensus pattern (13 bp):
AAATGACCAAAAC
Found at i:67554368 original size:25 final size:25
Alignment explanation
Indices: 67554339--67554463 Score: 76
Period size: 25 Copynumber: 5.2 Consensus size: 25
67554329 GAATGGCCAA
67554339 TGTGATGAATGTGAACATGCATATG
1 TGTGATGAATGTGAACATGCATATG
* *
67554364 TGTGAT-AAGGCCG-A-ATGGCCA-A--
1 TGTGATGAATG-TGAACAT-G-CATATG
67554386 TGTGATGAATGTGAACATGCATATG
1 TGTGATGAATGTGAACATGCATATG
* *
67554411 TGTGAT-AAGGCCG-A-ATGGCCA-A--
1 TGTGATGAATG-TGAACAT-G-CATATG
67554433 TGTGATGAATGTGAACATGCATATG
1 TGTGATGAATGTGAACATGCATATG
67554458 TGTGAT
1 TGTGAT
67554464 AAGGCCGAAT
Statistics
Matches: 74, Mismatches: 8, Indels: 36
0.63 0.07 0.31
Matches are distributed among these distances:
22 18 0.24
23 16 0.22
24 16 0.22
25 24 0.32
ACGTcount: A:0.31, C:0.11, G:0.30, T:0.28
Consensus pattern (25 bp):
TGTGATGAATGTGAACATGCATATG
Found at i:67554443 original size:141 final size:140
Alignment explanation
Indices: 67554291--67554617 Score: 501
Period size: 141 Copynumber: 2.3 Consensus size: 140
67554281 TTAGGATTTT
*
67554291 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAA-GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
* * *
67554356 TGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGATAAGG
65 TGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGAGAACATGCATATATGTGATAAGG
**
67554421 CCGAATGGCCA
130 CAAAATGGCCA
* * *
67554432 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAA-GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
67554497 TGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGAGAACATGCATATATGTGATAAGG
65 TGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGAGAACATGCATATATGTGATAAGG
67554562 CAAAATGGCCA
130 CAAAATGGCCA
** * * *
67554573 ATGTGACAAACGTGGAAGTGTATATATGTGGTAAAGCCGAATGGC
1 ATGTGATGAATGT-GAAGTGTATATATGTGATAAGGCCGAATGGC
67554618 TAGTGTGAAA
Statistics
Matches: 167, Mismatches: 18, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
141 164 0.98
142 3 0.02
ACGTcount: A:0.34, C:0.12, G:0.29, T:0.25
Consensus pattern (140 bp):
ATGTGATGAATGTGAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACAT
GCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGAGAACATGCATATATGTGATAAGGC
AAAATGGCCA
Found at i:67554617 original size:47 final size:47
Alignment explanation
Indices: 67554291--67554578 Score: 486
Period size: 47 Copynumber: 6.1 Consensus size: 47
67554281 TTAGGATTTT
** * *
67554291 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
67554338 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
67554385 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
67554432 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
67554479 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* **
67554526 ATGTGATGAATGAGAACATGCATATATGTGATAAGGCAAAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
67554573 ATGTGA
1 ATGTGA
67554579 CAAACGTGGA
Statistics
Matches: 232, Mismatches: 9, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 232 1.00
ACGTcount: A:0.34, C:0.11, G:0.29, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:67554653 original size:48 final size:48
Alignment explanation
Indices: 67554595--67554881 Score: 475
Period size: 48 Copynumber: 5.9 Consensus size: 48
67554585 TGGAAGTGTA
*
67554595 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
67554643 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
67554691 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* *
67554739 TATATGTGGTAAAGCCGAATGGCTAACGTGAAATATATATCTGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA--TGAGATATG
* *
67554789 TATATGTGGTAAAGCCGAATGACTAGTGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* * * *
67554837 TATATGTGGTAAAGCTGAATGGTTAGTGTGAAATATGTAGGAGAT
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAT
67554882 GTGTGTATAT
Statistics
Matches: 226, Mismatches: 11, Indels: 4
0.94 0.05 0.02
Matches are distributed among these distances:
48 182 0.81
50 44 0.19
ACGTcount: A:0.35, C:0.06, G:0.28, T:0.31
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
Found at i:67554800 original size:146 final size:144
Alignment explanation
Indices: 67554595--67554881 Score: 475
Period size: 146 Copynumber: 2.0 Consensus size: 144
67554585 TGGAAGTGTA
** *
67554595 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
1 TATATGTGGTAAAGCCGAATGGCTAACGTGAAATATATATGAGATATGTATATGTGGTAAAGCCG
*
67554660 AATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
66 AATGACTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
*
67554725 ATGTATGAGATATG
131 ATGTAGGAGATATG
67554739 TATATGTGGTAAAGCCGAATGGCTAACGTGAAATATATATCTGAGATATGTATATGTGGTAAAGC
1 TATATGTGGTAAAGCCGAATGGCTAACGTGAAATATATA--TGAGATATGTATATGTGGTAAAGC
* * * *
67554804 CGAATGACTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCTGAATGGTTAGTGTGAA
64 CGAATGACTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
67554869 ATATGTAGGAGAT
129 ATATGTAGGAGAT
67554882 GTGTGTATAT
Statistics
Matches: 132, Mismatches: 9, Indels: 2
0.92 0.06 0.01
Matches are distributed among these distances:
144 36 0.27
146 96 0.73
ACGTcount: A:0.35, C:0.06, G:0.28, T:0.31
Consensus pattern (144 bp):
TATATGTGGTAAAGCCGAATGGCTAACGTGAAATATATATGAGATATGTATATGTGGTAAAGCCG
AATGACTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
ATGTAGGAGATATG
Found at i:67555130 original size:37 final size:37
Alignment explanation
Indices: 67555022--67555130 Score: 182
Period size: 37 Copynumber: 2.9 Consensus size: 37
67555012 GGAAATATAT
*
67555022 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
67555059 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* * *
67555096 TCCGGGTAAGACCCAATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
67555131 CATCTGAGCT
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 68 1.00
ACGTcount: A:0.24, C:0.19, G:0.30, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:67558886 original size:15 final size:15
Alignment explanation
Indices: 67558866--67558896 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
67558856 ATTATGATAT
67558866 TGTATCTTAGATTTC
1 TGTATCTTAGATTTC
*
67558881 TGTATCTTGGATTTC
1 TGTATCTTAGATTTC
67558896 T
1 T
67558897 TTGTCCTGGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.16, C:0.13, G:0.16, T:0.55
Consensus pattern (15 bp):
TGTATCTTAGATTTC
Found at i:67577231 original size:42 final size:42
Alignment explanation
Indices: 67577170--67577252 Score: 139
Period size: 42 Copynumber: 2.0 Consensus size: 42
67577160 TAATGCACCG
* *
67577170 TAACCCTATTCTGGAGTTGAATACGTGTGAGGGGTGTTACAA
1 TAACCCTATTCTAGAGTTGAATACGGGTGAGGGGTGTTACAA
*
67577212 TAACCCTATTCTAGCGTTGAATACGGGTGAGGGGTGTTACA
1 TAACCCTATTCTAGAGTTGAATACGGGTGAGGGGTGTTACA
67577253 TATGTTTTAG
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 38 1.00
ACGTcount: A:0.25, C:0.16, G:0.29, T:0.30
Consensus pattern (42 bp):
TAACCCTATTCTAGAGTTGAATACGGGTGAGGGGTGTTACAA
Found at i:67585028 original size:17 final size:18
Alignment explanation
Indices: 67585006--67585043 Score: 69
Period size: 17 Copynumber: 2.2 Consensus size: 18
67584996 GGCCCATTGT
67585006 AGTGTAGTAACAGT-AAC
1 AGTGTAGTAACAGTAAAC
67585023 AGTGTAGTAACAGTAAAC
1 AGTGTAGTAACAGTAAAC
67585041 AGT
1 AGT
67585044 ATGCAAGTCC
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 14 0.70
18 6 0.30
ACGTcount: A:0.42, C:0.11, G:0.24, T:0.24
Consensus pattern (18 bp):
AGTGTAGTAACAGTAAAC
Found at i:67585402 original size:27 final size:27
Alignment explanation
Indices: 67585360--67585520 Score: 187
Period size: 27 Copynumber: 6.0 Consensus size: 27
67585350 AAAAATACAT
* * *
67585360 CACATAGGGGTAAAACAGTCATCTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
* *
67585387 CATAAAAGGGCAAAACAGTCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
*
67585414 CACATAAGGGCAAAATAGTCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
* * * *
67585441 CTCATAAGGGAAAAATAATCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
* *
67585468 CCCATAAGGGCAAAACAATCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
* * *
67585495 CCCATAAGGGAAAAATAGTCATTTTA
1 CACATAAGGGCAAAACAGTCATTTTA
67585521 TCGATTAAGG
Statistics
Matches: 117, Mismatches: 17, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 117 1.00
ACGTcount: A:0.42, C:0.19, G:0.14, T:0.25
Consensus pattern (27 bp):
CACATAAGGGCAAAACAGTCATTTTAC
Found at i:67585450 original size:54 final size:54
Alignment explanation
Indices: 67585360--67585520 Score: 207
Period size: 54 Copynumber: 3.0 Consensus size: 54
67585350 AAAAATACAT
* * * * * *
67585360 CACATAGGGGTAAAACAGTCATCTTACCAT-AAAAGGGCAAAACAGTCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTACC-TCATAAGGGAAAAATAGTCATTTTAC
* *
67585414 CACATAAGGGCAAAATAGTCATTTTACCTCATAAGGGAAAAATAATCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTACCTCATAAGGGAAAAATAGTCATTTTAC
* * *
67585468 CCCATAAGGGCAAAACAATCATTTTACCCCATAAGGGAAAAATAGTCATTTTA
1 CACATAAGGGCAAAACAGTCATTTTACCTCATAAGGGAAAAATAGTCATTTTA
67585521 TCGATTAAGG
Statistics
Matches: 93, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
53 1 0.01
54 92 0.99
ACGTcount: A:0.42, C:0.19, G:0.14, T:0.25
Consensus pattern (54 bp):
CACATAAGGGCAAAACAGTCATTTTACCTCATAAGGGAAAAATAGTCATTTTAC
Found at i:67588797 original size:18 final size:18
Alignment explanation
Indices: 67588774--67588845 Score: 92
Period size: 18 Copynumber: 4.1 Consensus size: 18
67588764 CTTGGCCCAA
*
67588774 TGCAGTAACAGTAAATAG
1 TGCAGTAACAGTAAACAG
* *
67588792 TGCAGTAATAGT-AGCAG
1 TGCAGTAACAGTAAACAG
67588809 TGCAGTAACAGTAAACAG
1 TGCAGTAACAGTAAACAG
* *
67588827 TGTAGTAATAGTAAACAG
1 TGCAGTAACAGTAAACAG
67588845 T
1 T
67588846 ATGCAAGTTC
Statistics
Matches: 46, Mismatches: 7, Indels: 2
0.84 0.13 0.04
Matches are distributed among these distances:
17 14 0.30
18 32 0.70
ACGTcount: A:0.42, C:0.11, G:0.24, T:0.24
Consensus pattern (18 bp):
TGCAGTAACAGTAAACAG
Found at i:67589178 original size:27 final size:26
Alignment explanation
Indices: 67589145--67589383 Score: 244
Period size: 27 Copynumber: 8.9 Consensus size: 26
67589135 CATACATCAC
* *
67589145 ATAAGGGTAAAACAGTCATCTTACCAT
1 ATAAGGGCAAAACAGTCATTTTACC-T
*
67589172 AAAAGGGCAAAACAGTCATTTTACCAT
1 ATAAGGGCAAAACAGTCATTTTACC-T
*
67589199 ATCAGGGCAAAACAGTCATTTTACCT
1 ATAAGGGCAAAACAGTCATTTTACCT
* * * *
67589225 CATAAGGGTAAAATAATCATTTTACCCC
1 -ATAAGGGCAAAACAGTCATTTTA-CCT
* * *
67589253 ATAAGGCCAAAATAGTCAATTTACCT
1 ATAAGGGCAAAACAGTCATTTTACCT
67589279 CATAAGGGCAAAACAGTCATTTTACCT
1 -ATAAGGGCAAAACAGTCATTTTACCT
* * *
67589306 CATAAAGGCAAAACAGTGATTTTACCAC
1 -ATAAGGGCAAAACAGTCATTTTACC-T
*
67589334 ATAAGGGCAAAACAGTCATTTTACCCC
1 ATAAGGGCAAAACAGTCATTTTA-CCT
* * *
67589361 ATAAGGGAAAAATAATCATTTTA
1 ATAAGGGCAAAACAGTCATTTTA
67589384 TTGATTAAGG
Statistics
Matches: 181, Mismatches: 26, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
26 3 0.02
27 174 0.96
28 4 0.02
ACGTcount: A:0.41, C:0.20, G:0.14, T:0.26
Consensus pattern (26 bp):
ATAAGGGCAAAACAGTCATTTTACCT
Found at i:67589250 original size:81 final size:81
Alignment explanation
Indices: 67589144--67589383 Score: 311
Period size: 81 Copynumber: 3.0 Consensus size: 81
67589134 ACATACATCA
* * * *
67589144 CATAAGGGTAAAACAGTCATCTTACCATAAAAGGGCAAAACAGTCATTTTACCAT-ATCAGGGCA
1 CATAAGGGTAAAACAGTCATTTTACCACATAAGGGCAAAACAGTCATTTTACC-TCATAAGGGCA
67589208 AAACAGTCATTTTACCT
65 AAACAGTCATTTTACCT
* * * * * *
67589225 CATAAGGGTAAAATAATCATTTTACCCCATAAGGCCAAAATAGTCAATTTACCTCATAAGGGCAA
1 CATAAGGGTAAAACAGTCATTTTACCACATAAGGGCAAAACAGTCATTTTACCTCATAAGGGCAA
67589290 AACAGTCATTTTACCT
66 AACAGTCATTTTACCT
* * * * *
67589306 CATAAAGGCAAAACAGTGATTTTACCACATAAGGGCAAAACAGTCATTTTACCCCATAAGGGAAA
1 CATAAGGGTAAAACAGTCATTTTACCACATAAGGGCAAAACAGTCATTTTACCTCATAAGGGCAA
* *
67589371 AATAATCATTTTA
66 AACAGTCATTTTA
67589384 TTGATTAAGG
Statistics
Matches: 135, Mismatches: 23, Indels: 2
0.84 0.14 0.01
Matches are distributed among these distances:
80 1 0.01
81 134 0.99
ACGTcount: A:0.41, C:0.20, G:0.14, T:0.25
Consensus pattern (81 bp):
CATAAGGGTAAAACAGTCATTTTACCACATAAGGGCAAAACAGTCATTTTACCTCATAAGGGCAA
AACAGTCATTTTACCT
Found at i:67589394 original size:54 final size:54
Alignment explanation
Indices: 67589144--67589383 Score: 293
Period size: 54 Copynumber: 4.4 Consensus size: 54
67589134 ACATACATCA
* * * *
67589144 CATAAGGGTAAAACAGTCATCTTACCAT-AAAAGGGCAAAACAGTCATTTTACCA
1 CATAAGGGCAAAACAGTCATTTTACC-TCATAAGGGCAAAACAGTCATTTTACCC
* * * * *
67589198 TATCAGGGCAAAACAGTCATTTTACCTCATAAGGGTAAAATAATCATTTTACCC
1 CATAAGGGCAAAACAGTCATTTTACCTCATAAGGGCAAAACAGTCATTTTACCC
* * * *
67589252 CATAAGGCCAAAATAGTCAATTTACCTCATAAGGGCAAAACAGTCATTTTACCT
1 CATAAGGGCAAAACAGTCATTTTACCTCATAAGGGCAAAACAGTCATTTTACCC
* * *
67589306 CATAAAGGCAAAACAGTGATTTTACCACATAAGGGCAAAACAGTCATTTTACCC
1 CATAAGGGCAAAACAGTCATTTTACCTCATAAGGGCAAAACAGTCATTTTACCC
* * *
67589360 CATAAGGGAAAAATAATCATTTTA
1 CATAAGGGCAAAACAGTCATTTTA
67589384 TTGATTAAGG
Statistics
Matches: 155, Mismatches: 30, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
53 1 0.01
54 154 0.99
ACGTcount: A:0.41, C:0.20, G:0.14, T:0.25
Consensus pattern (54 bp):
CATAAGGGCAAAACAGTCATTTTACCTCATAAGGGCAAAACAGTCATTTTACCC
Found at i:67592091 original size:68 final size:65
Alignment explanation
Indices: 67591886--67592137 Score: 217
Period size: 68 Copynumber: 3.8 Consensus size: 65
67591876 TAGAGTTCAA
* * * *
67591886 CTCTCTTGTACACATGGTGAACAC-TCAGTACCACCCATGTGACCTAGCCA-ATTTA-TCTCGTA
1 CTCTCTTGTACACATGGTGTACACAT-AGTACCACCCATGTGACCTAGCTACATATATTCTTGTA
67591948 G
65 G
* * * * * * *
67591949 CTCTCTTGT-CTACATGGTGTCCTTCACTTGGAGCCACGCATGCGACCTAGCTACATATA-TCCT
1 CTCTCTTGTAC-ACATGGTGTAC-ACA-TAGTA-CCACCCATGTGACCTAGCTACATATATTCTT
67592012 GTAG
62 GTAG
* *
67592016 CTCTCTTGTATACATGGTGTACACATAGTATCACCCATGTGACCTAGCTACATCATAATGTCTTG
1 CTCTCTTGTACACATGGTGTACACATAGTACCACCCATGTGACCTAGCTACAT-AT-AT-TCTTG
67592081 TAG
63 TAG
* * * * * **
67592084 CTCTCTTGTACACATGATGTGCACTTAGCACTATACATGTGACCTAGCTACATA
1 CTCTCTTGTACACATGGTGTACACATAGTACCACCCATGTGACCTAGCTACATA
67592138 CCATCTGTAT
Statistics
Matches: 149, Mismatches: 29, Indels: 18
0.76 0.15 0.09
Matches are distributed among these distances:
62 1 0.01
63 18 0.12
64 21 0.14
65 7 0.05
66 21 0.14
67 30 0.20
68 51 0.34
ACGTcount: A:0.25, C:0.27, G:0.17, T:0.31
Consensus pattern (65 bp):
CTCTCTTGTACACATGGTGTACACATAGTACCACCCATGTGACCTAGCTACATATATTCTTGTAG
Found at i:67592849 original size:30 final size:30
Alignment explanation
Indices: 67592815--67592875 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
67592805 TCCTTAACTC
67592815 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
67592845 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
67592875 A
1 A
67592876 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:67596348 original size:21 final size:21
Alignment explanation
Indices: 67596297--67596353 Score: 69
Period size: 21 Copynumber: 2.7 Consensus size: 21
67596287 TTTTCATCTT
* *
67596297 CAACAACTTCTTCTTTTTTAG
1 CAACAACTTCTTCTTCTATAG
* *
67596318 CAATAGCTTCTTCTTCTATAG
1 CAACAACTTCTTCTTCTATAG
67596339 CAACAACTTCCTTCT
1 CAACAACTT-CTTCT
67596354 CAACAATAGT
Statistics
Matches: 29, Mismatches: 6, Indels: 1
0.81 0.17 0.03
Matches are distributed among these distances:
21 24 0.83
22 5 0.17
ACGTcount: A:0.25, C:0.28, G:0.05, T:0.42
Consensus pattern (21 bp):
CAACAACTTCTTCTTCTATAG
Found at i:67609231 original size:25 final size:25
Alignment explanation
Indices: 67609156--67609231 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 25
67609146 GTGTATATAT
67609156 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
* * * *
67609181 ATGA-ATGTG-AGCAT-G-CATATGT-
1 GTGATAAG-GCCGAATGGCCA-ATGTG
67609203 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
67609228 GTGA
1 GTGA
67609232 ATATGAACAT
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 6 0.17
23 10 0.28
24 10 0.28
25 10 0.28
ACGTcount: A:0.29, C:0.13, G:0.34, T:0.24
Consensus pattern (25 bp):
GTGATAAGGCCGAATGGCCAATGTG
Found at i:67609272 original size:22 final size:22
Alignment explanation
Indices: 67609247--67609323 Score: 68
Period size: 22 Copynumber: 3.4 Consensus size: 22
67609237 AACATGCATA
67609247 TATGTGATAAGGCCGAATGGCC
1 TATGTGATAAGGCCGAATGGCC
* * *
67609269 TATGTGATGAATG-TGAACAT-GCATA
1 TATGTGAT-AAGGCCG-A-ATGGC--C
67609294 TATGTGATAAGGCCGAATGGCC
1 TATGTGATAAGGCCGAATGGCC
67609316 TATGTGAT
1 TATGTGAT
67609324 GAATGTGAAC
Statistics
Matches: 42, Mismatches: 6, Indels: 14
0.68 0.10 0.23
Matches are distributed among these distances:
22 17 0.40
23 8 0.19
24 8 0.19
25 9 0.21
ACGTcount: A:0.30, C:0.13, G:0.29, T:0.29
Consensus pattern (22 bp):
TATGTGATAAGGCCGAATGGCC
Found at i:67609463 original size:47 final size:47
Alignment explanation
Indices: 67609129--67609462 Score: 515
Period size: 47 Copynumber: 7.1 Consensus size: 47
67609119 TTAGGATTTT
** *
67609129 ATGTGATGAATGTGAATGTGTATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
67609176 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
67609223 ATGTGGTGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCT
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
67609270 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCT
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
67609317 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAGTGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
67609364 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * *
67609411 ATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATGGTCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
67609458 ATGTG
1 ATGTG
67609463 GAATATATAT
Statistics
Matches: 263, Mismatches: 24, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 263 1.00
ACGTcount: A:0.31, C:0.12, G:0.30, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:67609514 original size:94 final size:92
Alignment explanation
Indices: 67609150--67609519 Score: 444
Period size: 94 Copynumber: 3.9 Consensus size: 92
67609140 GTGAATGTGT
*
67609150 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAG-CATGCATATGTGTGATAAGGCC
1 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGACATGTATATGTG-G-TAAGGCC
*
67609214 GAATGGCCAATGTGGTGAATATGAACATGC
64 GAATGGCCTATGT-GTGAATATGAACATGC
* *
67609244 ATATATGTGATAAGGCCGAATGGCCTATGTGATGAATGTGA-ACATGCATATATGTGATAAGGCC
1 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGACATG--TATATGTGGTAAGGCC
*
67609308 GAATGGCCTATGTGATGAATGTGAACATGC
64 GAATGGCCTATGTG-TGAATATGAACATGC
* *
67609338 ATATATGTGATAAGGCCGAGTGGCCAATGTGATGAATGTGAG-CATGCATATGTGTGATAAGGCC
1 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGACATGTATATGTG-G-TAAGGCC
*
67609402 GAATGGCCAATGTGGTGAATATGAACATGC
64 GAATGGCCTATGT-GTGAATATGAACATGC
* * * * * * *
67609432 ATATATGTGGTAAAGCCGAATGGTCAATGTGGAATATATATATGAGATATGTATATGTGGTAAAG
1 ATATATGTGATAAGGCCGAATGGCCAATGT-G-AT-GA-ATGTGAGACATGTATATGTGGTAAGG
67609497 CCGAATGG-CTA-GTGTGAAATATG
62 CCGAATGGCCTATGTGTG-AATATG
67609520 TAGGCGATGT
Statistics
Matches: 241, Mismatches: 21, Indels: 27
0.83 0.07 0.09
Matches are distributed among these distances:
92 7 0.03
93 1 0.00
94 182 0.76
95 10 0.04
96 11 0.05
97 13 0.05
98 7 0.03
99 10 0.04
ACGTcount: A:0.32, C:0.11, G:0.29, T:0.27
Consensus pattern (92 bp):
ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGACATGTATATGTGGTAAGGCCGA
ATGGCCTATGTGTGAATATGAACATGC
Found at i:67609813 original size:37 final size:37
Alignment explanation
Indices: 67609676--67609812 Score: 211
Period size: 37 Copynumber: 3.7 Consensus size: 37
67609666 ATTCCGGTTG
67609676 AGACCCGATGACTACGTGTGGAGATTATGTCCGGGTA
1 AGACCCGATGACTACGTGTGGAGATTATGTCCGGGTA
* *
67609713 AGCCCCGATGACTACGTGTGGAGAGTATGTCCGGGTA
1 AGACCCGATGACTACGTGTGGAGATTATGTCCGGGTA
*
67609750 AGACCCGATGACTACGTGTGGAGATTTTGTCCGGGTA
1 AGACCCGATGACTACGTGTGGAGATTATGTCCGGGTA
* * * *
67609787 AAACCCAATAACTTCGTGTGGAGATT
1 AGACCCGATGACTACGTGTGGAGATT
67609813 TCGTCTGAGC
Statistics
Matches: 91, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 91 1.00
ACGTcount: A:0.25, C:0.20, G:0.31, T:0.25
Consensus pattern (37 bp):
AGACCCGATGACTACGTGTGGAGATTATGTCCGGGTA
Found at i:67615170 original size:27 final size:27
Alignment explanation
Indices: 67615139--67615316 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
67615129 TAAATTGTAC
67615139 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
67615166 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
67615192 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
67615220 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
67615248 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
67615275 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
67615302 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
67615317 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:67615253 original size:82 final size:81
Alignment explanation
Indices: 67615140--67615295 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
67615130 AAATTGTACA
* *
67615140 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
67615204 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
67615221 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
67615286 TGCGAGTTGA
65 TGCGAATTGA
67615296 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:67615307 original size:82 final size:81
Alignment explanation
Indices: 67615136--67615316 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
67615126 GATTAAATTG
* *
67615136 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
67615201 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
67615217 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
67615281 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
67615299 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
67615317 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:67623195 original size:27 final size:27
Alignment explanation
Indices: 67623164--67623341 Score: 214
Period size: 27 Copynumber: 6.6 Consensus size: 27
67623154 TAAATTGTAC
67623164 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
67623191 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
67623217 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
67623245 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
*
67623273 AGCACTAAGTGTGCGATTTGATTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
67623300 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
67623327 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
67623342 GACTCGATAT
Statistics
Matches: 131, Mismatches: 17, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
27 108 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:67623278 original size:82 final size:81
Alignment explanation
Indices: 67623165--67623320 Score: 242
Period size: 82 Copynumber: 1.9 Consensus size: 81
67623155 AAATTGTACA
*
67623165 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGTA-GCACTAAGTG
67623229 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
67623246 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTATGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGTAGCACTAAGTG
*
67623311 TGCGAGTTGA
65 TGCGAATTGA
67623321 TTATATAGCA
Statistics
Matches: 68, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
81 15 0.22
82 52 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:67623332 original size:82 final size:81
Alignment explanation
Indices: 67623161--67623341 Score: 238
Period size: 82 Copynumber: 2.2 Consensus size: 81
67623151 GATTAAATTG
*
67623161 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGATGCACTAA
67623226 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
67623242 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTATG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGAT-GCACT
* **
67623306 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
67623324 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
67623342 GACTCGATAT
Statistics
Matches: 85, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
81 18 0.21
82 67 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGATGCACTAA
GTGTGCGAATTGACCA
Found at i:67649229 original size:22 final size:21
Alignment explanation
Indices: 67649204--67649248 Score: 72
Period size: 22 Copynumber: 2.1 Consensus size: 21
67649194 AAGTAAGAAA
*
67649204 AACAATAAAAACAACTAAAAAT
1 AACAATAAAAACAA-AAAAAAT
67649226 AACAATAAAAACAAAAAAAAT
1 AACAATAAAAACAAAAAAAAT
67649247 AA
1 AA
67649249 ACTTAATGGT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 8 0.36
22 14 0.64
ACGTcount: A:0.78, C:0.11, G:0.00, T:0.11
Consensus pattern (21 bp):
AACAATAAAAACAAAAAAAAT
Found at i:67654256 original size:18 final size:18
Alignment explanation
Indices: 67654233--67654270 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
67654223 TGGTAAAGAA
67654233 TTCAACCATTGTTTAGAT
1 TTCAACCATTGTTTAGAT
67654251 TTCAACCATTGTTTAGAT
1 TTCAACCATTGTTTAGAT
67654269 TT
1 TT
67654271 GTTCCTCAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.26, C:0.16, G:0.11, T:0.47
Consensus pattern (18 bp):
TTCAACCATTGTTTAGAT
Found at i:67660993 original size:48 final size:48
Alignment explanation
Indices: 67660934--67661276 Score: 203
Period size: 48 Copynumber: 7.1 Consensus size: 48
67660924 CTATGTCTGA
67660934 GACATGGCATCGGCCA-CAACATGAGAACTAGTGTAAGACCATGTTTGG
1 GACATGGCATCGGCCATCAA-ATGAGAACTAGTGTAAGACCATGTTTGG
* * * * ** * * *
67660982 AACATGACATCGACAATGTAATAAGAGCCAGTGTAAGACCATGTTTGG
1 GACATGGCATCGGCCATCAAATGAGAACTAGTGTAAGACCATGTTTGG
* * * *
67661030 GACATGGCATCGG-CATTGATATGTGCACTAGTGTAAGACCATGTTTGG
1 GACATGGCATCGGCCA-TCAAATGAGAACTAGTGTAAGACCATGTTTGG
* * * * * * * * *
67661078 GACATAGCATCGACCATGATATGGGAGCCAATGTAAGACCATGTCTGG
1 GACATGGCATCGGCCATCAAATGAGAACTAGTGTAAGACCATGTTTGG
* * * * * * * *
67661126 GACATGGCATCGG-CATTGAGACGAGAGA-TAATATAAAACCATCTCTGG
1 GACATGGCATCGGCCA-TCAAATGAGA-ACTAGTGTAAGACCATGTTTGG
* * * * * *
67661174 GACATGGCATCGG-CATTGAGATGAGAGCTAATGTAAGACCATATATGG
1 GACATGGCATCGGCCA-TCAAATGAGAACTAGTGTAAGACCATGTTTGG
* * * * * *
67661222 GACATGGCATCAGTC-TCGACATGTGAGCTCGTGTAAGACCATGTTTGG
1 GACATGGCATCGGCCATC-AAATGAGAACTAGTGTAAGACCATGTTTGG
*
67661270 AACATGG
1 GACATGG
67661277 TATCAGCATT
Statistics
Matches: 234, Mismatches: 53, Indels: 16
0.77 0.17 0.05
Matches are distributed among these distances:
47 4 0.02
48 226 0.97
49 4 0.02
ACGTcount: A:0.31, C:0.18, G:0.27, T:0.23
Consensus pattern (48 bp):
GACATGGCATCGGCCATCAAATGAGAACTAGTGTAAGACCATGTTTGG
Found at i:67661060 original size:96 final size:96
Alignment explanation
Indices: 67660934--67661275 Score: 325
Period size: 96 Copynumber: 3.6 Consensus size: 96
67660924 CTATGTCTGA
** * *
67660934 GACATGGCATCGGCCA-CAACATGAGAACTAGTGTAAGACCATGTTTGGAACATGACATCGACAA
1 GACATGGCATCGG-CATTGACATGTGAGCTAGTGTAAGACCATGTTTGGAACATGACATCGACAA
* * *
67660998 TGTA-ATAAGAGCCAGTGTAAGACCATGTTTGG
65 TG-AGATGAGAGCCAATGTAAGACCATGTATGG
* * *
67661030 GACATGGCATCGGCATTGATATGTGCA-CTAGTGTAAGACCATGTTTGGGACAT-AGCATCGACC
1 GACATGGCATCGGCATTGACATGTG-AGCTAGTGTAAGACCATGTTTGGAACATGA-CATCGACA
* * *
67661093 ATGATATGGGAGCCAATGTAAGACCATGTCTGG
64 ATGAGATGAGAGCCAATGTAAGACCATGTATGG
* * * * * * * * * * * * *
67661126 GACATGGCATCGGCATTGAGACGAGAGATAATATAAAACCATCTCTGGGACATGGCATCGGCATT
1 GACATGGCATCGGCATTGACATGTGAGCTAGTGTAAGACCATGTTTGGAACATGACATCGACAAT
* *
67661191 GAGATGAGAGCTAATGTAAGACCATATATGG
66 GAGATGAGAGCCAATGTAAGACCATGTATGG
* * *
67661222 GACATGGCATCAGTC-TCGACATGTGAGCTCGTGTAAGACCATGTTTGGAACATG
1 GACATGGCATC-GGCATTGACATGTGAGCTAGTGTAAGACCATGTTTGGAACATG
67661276 GTATCAGCAT
Statistics
Matches: 198, Mismatches: 41, Indels: 14
0.78 0.16 0.06
Matches are distributed among these distances:
95 5 0.03
96 190 0.96
97 3 0.02
ACGTcount: A:0.31, C:0.18, G:0.27, T:0.23
Consensus pattern (96 bp):
GACATGGCATCGGCATTGACATGTGAGCTAGTGTAAGACCATGTTTGGAACATGACATCGACAAT
GAGATGAGAGCCAATGTAAGACCATGTATGG
Found at i:67661257 original size:144 final size:143
Alignment explanation
Indices: 67661027--67661286 Score: 328
Period size: 144 Copynumber: 1.8 Consensus size: 143
67661017 AGACCATGTT
* * * * *
67661027 TGGGACATGGCATCGGCATTGATATGTGCACTAGTGTAAGACCATGTTTGGGACATAGCATCGAC
1 TGGGACATGGCATCGGCATTGAGATGAGCACTAATGTAAGACCATATATGGGACATAGCATCGAC
* * *
67661092 CATGATATGGGAGCCAATGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACGAGAGATAA
66 CA-GACATGGGAGCCAATGTAAGACCATGTCTGGAACATGGCATCAGCATTGAGACGAGAGATAA
67661157 TATAAAACCATCTC
130 TATAAAACCATCTC
*
67661171 TGGGACATGGCATCGGCATTGAGATGAG-AGCTAATGTAAGACCATATATGGGACATGGCATCAG
1 TGGGACATGGCATCGGCATTGAGATGAGCA-CTAATGTAAGACCATATATGGGACATAGCATC-G
* * * * *
67661235 TCTC-GACATGTGAGCTC-GTGTAAGACCATGTTTGGAACATGGTATCAGCATT
64 AC-CAGACATGGGAGC-CAATGTAAGACCATGTCTGGAACATGGCATCAGCATT
67661287 TCACCCTCTT
Statistics
Matches: 98, Mismatches: 14, Indels: 8
0.82 0.12 0.07
Matches are distributed among these distances:
143 1 0.01
144 93 0.95
145 3 0.03
146 1 0.01
ACGTcount: A:0.30, C:0.18, G:0.28, T:0.25
Consensus pattern (143 bp):
TGGGACATGGCATCGGCATTGAGATGAGCACTAATGTAAGACCATATATGGGACATAGCATCGAC
CAGACATGGGAGCCAATGTAAGACCATGTCTGGAACATGGCATCAGCATTGAGACGAGAGATAAT
ATAAAACCATCTC
Found at i:67667767 original size:47 final size:47
Alignment explanation
Indices: 67667683--67668045 Score: 541
Period size: 47 Copynumber: 7.6 Consensus size: 47
67667673 GTATATTTGA
* *
67667683 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTG
1 ATGAATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTG
* * * *
67667732 ATGAATGTGAAAGCGTATATATGTGATAAGGCCTAATAGCCGATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTG
67667779 ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTG
67667826 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTG
1 ATGAATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTG
* *
67667875 ATGAATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTG
1 ATGAATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTG
* *
67667922 ATGAATGTGAACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTG
1 ATGAATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTG
67667969 ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTG
* * *
67668016 ATGGATGTGGAAGTGTATAAATGTGATAAG
1 ATGAATGTGAAAGTGTATATATGTGATAAG
67668046 TCCCGAAGGG
Statistics
Matches: 293, Mismatches: 17, Indels: 10
0.92 0.05 0.03
Matches are distributed among these distances:
46 1 0.00
47 232 0.79
49 59 0.20
50 1 0.00
ACGTcount: A:0.34, C:0.09, G:0.29, T:0.28
Consensus pattern (47 bp):
ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTG
Found at i:67667846 original size:143 final size:143
Alignment explanation
Indices: 67667683--67668045 Score: 563
Period size: 143 Copynumber: 2.6 Consensus size: 143
67667673 GTATATTTGA
* * *
67667683 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGCGT
1 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGT
* * * *
67667748 ATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCC
66 ATATATGTGATAAGGCCGAATAGCCAATGTGATGAATGTGAACA-TGCATATATGAGATAAGGCC
67667812 GAATGGCCAATGTG
130 GAATGGCCAATGTG
67667826 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TG
1 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-AGTG
* * *
67667890 TGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGAGATAAGGCC
65 TATATATGTGATAAGGCCGAATAGCCAATGTGATGAATGTGAACATGCATATATGAGATAAGGCC
67667955 GAATGGCCAATGTG
130 GAATGGCCAATGTG
* *
67667969 ATGAATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGGAAGTGT
1 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGT
*
67668032 ATAAATGTGATAAG
66 ATATATGTGATAAG
67668046 TCCCGAAGGG
Statistics
Matches: 202, Mismatches: 15, Indels: 8
0.90 0.07 0.04
Matches are distributed among these distances:
140 1 0.00
141 55 0.27
143 144 0.71
144 2 0.01
ACGTcount: A:0.34, C:0.09, G:0.29, T:0.28
Consensus pattern (143 bp):
ATGAATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGT
ATATATGTGATAAGGCCGAATAGCCAATGTGATGAATGTGAACATGCATATATGAGATAAGGCCG
AATGGCCAATGTG
Found at i:67673302 original size:48 final size:48
Alignment explanation
Indices: 67673153--67673471 Score: 243
Period size: 48 Copynumber: 6.6 Consensus size: 48
67673143 ATATATGTGC
* * ** * *
67673153 TAGTGTCAGACTATGTCTAAGACATGGCATCGGCCA-CGACATGAGA-A
1 TAGTGTAAGACCATGTCTGGGACATGGCATCGG-CATTGAGATGAGAGA
* * * ** * * *
67673200 CTAGTGTAAGACCATGTTTGGAACATGACATCAACAATGTA-ATAAGAGC
1 -TAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTG-AGATGAGAGA
* * * * *
67673249 CAGTGTAAGACCATATCTGGGACATGGCATCGGCATTGATATGTGCA-C
1 TAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGATGAG-AGA
* * * * * * *
67673297 TAGTGTAAGACCATGTTTGGGACATAGCATCGACCA-CGATATGGGAGC
1 TAGTGTAAGACCATGTCTGGGACATGGCATCG-GCATTGAGATGAGAGA
* * * *
67673345 CAGTGTAAGACCATGTGTAGGACATGGCATCGGCATTGAGACGAGAGA
1 TAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGATGAGAGA
* * * *
67673393 TAATATAAAACCATCTCTGGGACATGGCATCGGCATTGAGATGAGAGA
1 TAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGATGAGAGA
*
67673441 TAATGTAAGACCATGTCTGGGACATGGCATC
1 TAGTGTAAGACCATGTCTGGGACATGGCATC
67673472 AGTCTCGACA
Statistics
Matches: 213, Mismatches: 50, Indels: 16
0.76 0.18 0.06
Matches are distributed among these distances:
47 6 0.03
48 203 0.95
49 4 0.02
ACGTcount: A:0.32, C:0.18, G:0.27, T:0.23
Consensus pattern (48 bp):
TAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGATGAGAGA
Found at i:67673525 original size:144 final size:144
Alignment explanation
Indices: 67673258--67673525 Score: 353
Period size: 144 Copynumber: 1.9 Consensus size: 144
67673248 CCAGTGTAAG
* * * * *
67673258 ACCATATCTGGGACATGGCATCGGCATTGATATGTGCACTAGTGTAAGACCATGTTTGGGACATA
1 ACCATATCTGGGACATGGCATCGGCATTGAGATGAGCAATAATGTAAGACCATGTCTGGGACATA
* *
67673323 GCATCGACCACGATATGGGAGCCAGTGTAAGACCATGTGTAGGACATGGCATCGGCATTGAGACG
66 GCATCGACCACGACATGGGAGCCAGTGTAAGACCATGTGTAGGACATGGCATCAGCATTGAGACG
67673388 AGAGATAATATAAA
131 AGAGATAATATAAA
*
67673402 ACCATCTCTGGGACATGGCATCGGCATTGAGATGAG-AGATAATGTAAGACCATGTCTGGGACAT
1 ACCATATCTGGGACATGGCATCGGCATTGAGATGAGCA-ATAATGTAAGACCATGTCTGGGACAT
* * * * * * *
67673466 GGCATC-AGTCTCGACATGTGAGCCCGTGTAAGACCATGT-TTGGAACATGGTATCAGCATT
65 AGCATCGA-CCACGACATGGGAGCCAGTGTAAGACCATGTGTAGG-ACATGGCATCAGCATT
67673526 TCACCCTCTT
Statistics
Matches: 106, Mismatches: 15, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
143 5 0.05
144 101 0.95
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.24
Consensus pattern (144 bp):
ACCATATCTGGGACATGGCATCGGCATTGAGATGAGCAATAATGTAAGACCATGTCTGGGACATA
GCATCGACCACGACATGGGAGCCAGTGTAAGACCATGTGTAGGACATGGCATCAGCATTGAGACG
AGAGATAATATAAA
Found at i:67674727 original size:48 final size:48
Alignment explanation
Indices: 67674667--67674982 Score: 316
Period size: 48 Copynumber: 6.6 Consensus size: 48
67674657 TATGTGTGTT
*
67674667 AGTGTAAAACCATGTCTGGGACATGGCATCGGCCACGATATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACGATATGAGAGCC
* * * * * * * *
67674715 AGTGTAAGACCATGTTTAGAACATGGCATCAGCAATG-TAATGAGATCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACGAT-ATGAGAGCC
* * * *
67674763 AGTGTAAGACCATGTCTGGGACATGGCATC-GACATTGATATGTGCGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCA-CGATATGAGAGCC
* *
67674811 AATGTAAGACCATGTCTGGGACATGGCATCGGCCACGATATGAGAGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACGATATGAGAGCC
* * * * ** * *
67674859 AGTCTAAGGCCATGTTTGGGACATGGCATCAG-CATTAAGATGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCA-CGATATGAGAGCC
* * * *
67674907 AGTGTAAGACCATGTCTGGGACA-GGCATCGGTCTCGACATGTGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACGATATGAGAGCC
* *
67674954 AGTGTAAGACCATGTTTGGAACATGGCAT
1 AGTGTAAGACCATGTCTGGGACATGGCAT
67674983 TGGCAATTCA
Statistics
Matches: 215, Mismatches: 46, Indels: 14
0.78 0.17 0.05
Matches are distributed among these distances:
47 41 0.19
48 170 0.79
49 4 0.02
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.23
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACGATATGAGAGCC
Found at i:67674914 original size:144 final size:143
Alignment explanation
Indices: 67674669--67674982 Score: 445
Period size: 144 Copynumber: 2.2 Consensus size: 143
67674659 TGTGTGTTAG
* *
67674669 TGTAAAACCATGTCTGGGACATGGCATCGGCCACGATATGAGAGCCAGTGTAAGACCATGTTTAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCCACGATATGAGAGCCAGTCTAAGACCATGTTTAG
*
67674734 AACATGGCATCAGCAATGTAATGAGATCTAGTGTAAGACCATGTCTGGGACATGGCATC-GACAT
66 AACATGGCATCAGCAATGTAATGAGAGCTAGTGTAAGACCATGTCTGGGACA-GGCATCGGAC-T
* * *
67674798 TGATATGTGCGCCAA
129 CGACATGTGAGCCAA
* * *
67674813 TGTAAGACCATGTCTGGGACATGGCATCGGCCACGATATGAGAGTCAGTCTAAGGCCATGTTTGG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCCACGATATGAGAGCCAGTCTAAGACCATGTTTAG
* *
67674878 GACATGGCATCAGC-AT-TAAGATGAGAGCTAGTGTAAGACCATGTCTGGGACAGGCATCGGTCT
66 AACATGGCATCAGCAATGT-A-ATGAGAGCTAGTGTAAGACCATGTCTGGGACAGGCATCGGACT
*
67674941 CGACATGTGAGCCAG
129 CGACATGTGAGCCAA
* *
67674956 TGTAAGACCATGTTTGGAACATGGCAT
1 TGTAAGACCATGTCTGGGACATGGCAT
67674983 TGGCAATTCA
Statistics
Matches: 153, Mismatches: 14, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
142 1 0.01
143 46 0.30
144 106 0.69
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.24
Consensus pattern (143 bp):
TGTAAGACCATGTCTGGGACATGGCATCGGCCACGATATGAGAGCCAGTCTAAGACCATGTTTAG
AACATGGCATCAGCAATGTAATGAGAGCTAGTGTAAGACCATGTCTGGGACAGGCATCGGACTCG
ACATGTGAGCCAA
Found at i:67679313 original size:27 final size:27
Alignment explanation
Indices: 67679283--67679380 Score: 90
Period size: 27 Copynumber: 3.6 Consensus size: 27
67679273 GCAGGCTAGC
* *
67679283 ATTACTGAAATACCCTTGTAAGGTAGA
1 ATTACTGAAATACCCCTGTAAGGTAAA
* *
67679310 ATTACTGAAATGCCCCTGTAGGGTAAA
1 ATTACTGAAATACCCCTGTAAGGTAAA
** **
67679337 ATTACCAAAATACCCCTAGT-TTGTAAA
1 ATTACTGAAATACCCCT-GTAAGGTAAA
**
67679364 ATTACCAAAATACCCCT
1 ATTACTGAAATACCCCT
67679381 AGTTTGTAAA
Statistics
Matches: 61, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
27 59 0.97
28 2 0.03
ACGTcount: A:0.38, C:0.21, G:0.13, T:0.28
Consensus pattern (27 bp):
ATTACTGAAATACCCCTGTAAGGTAAA
Found at i:67679367 original size:54 final size:53
Alignment explanation
Indices: 67679309--67679431 Score: 133
Period size: 54 Copynumber: 2.3 Consensus size: 53
67679299 TGTAAGGTAG
*
67679309 AATTACTGAAATGCCCCT-GTAGGGTAAAATTACCAAAATACCCCT-AGTTTGTAA
1 AATTACTGAAATACCCCTAGT-GGGTAAAATTACCAAAA-ACCCCTGA-TTTGTAA
** ** * * *
67679363 AATTACCAAAATACCCCTAGTTTGTAAATTTACCAAAAACCTCTGATTTGTGA
1 AATTACTGAAATACCCCTAGTGGGTAAAATTACCAAAAACCCCTGATTTGTAA
67679416 AATTACTGAAATACCC
1 AATTACTGAAATACCC
67679432 TCGACCTATA
Statistics
Matches: 57, Mismatches: 10, Indels: 5
0.79 0.14 0.07
Matches are distributed among these distances:
53 25 0.44
54 30 0.53
55 2 0.04
ACGTcount: A:0.38, C:0.21, G:0.11, T:0.29
Consensus pattern (53 bp):
AATTACTGAAATACCCCTAGTGGGTAAAATTACCAAAAACCCCTGATTTGTAA
Found at i:67679412 original size:26 final size:27
Alignment explanation
Indices: 67679332--67679431 Score: 132
Period size: 27 Copynumber: 3.7 Consensus size: 27
67679322 CCCCTGTAGG
67679332 GTAAAATTACCAAAATACCCCTAGTTT
1 GTAAAATTACCAAAATACCCCTAGTTT
67679359 GTAAAATTACCAAAATACCCCTAGTTT
1 GTAAAATTACCAAAATACCCCTAGTTT
* *
67679386 GTAAATTTACCAAAA-ACCTCT-GATTT
1 GTAAAATTACCAAAATACCCCTAG-TTT
* **
67679412 GTGAAATTACTGAAATACCC
1 GTAAAATTACCAAAATACCC
67679432 TCGACCTATA
Statistics
Matches: 64, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
25 1 0.02
26 19 0.30
27 44 0.69
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (27 bp):
GTAAAATTACCAAAATACCCCTAGTTT
Found at i:67679484 original size:27 final size:26
Alignment explanation
Indices: 67679332--67679503 Score: 125
Period size: 27 Copynumber: 6.4 Consensus size: 26
67679322 CCCCTGTAGG
*
67679332 GTAAAATTACCAAAATACCCCT-AGTTT
1 GTAAAATTACC-AAATACCCTTGA-TTT
*
67679359 GTAAAATTACCAAAATACCCCT-AGTTT
1 GTAAAATTACC-AAATACCCTTGA-TTT
* *
67679386 GTAAATTTACCAAA-AACCTCTGATTT
1 GTAAAATTACCAAATACCCT-TGATTT
* * * **
67679412 GTGAAATTACTGAAATACCCTCGACCT
1 GTAAAATTAC-CAAATACCCTTGATTT
* * *
67679439 ATAAAATTACTGAAATACCCTTGACTT
1 GTAAAATTAC-CAAATACCCTTGATTT
67679466 GTAAAATTACCAAAGTACCCTTGATTT
1 GTAAAATTACCAAA-TACCCTTGATTT
**
67679493 ACAAAATTACC
1 GTAAAATTACC
67679504 GTTTTACCCT
Statistics
Matches: 121, Mismatches: 19, Indels: 10
0.81 0.13 0.07
Matches are distributed among these distances:
25 3 0.02
26 18 0.15
27 96 0.79
28 4 0.03
ACGTcount: A:0.40, C:0.22, G:0.09, T:0.30
Consensus pattern (26 bp):
GTAAAATTACCAAATACCCTTGATTT
Found at i:67679526 original size:54 final size:55
Alignment explanation
Indices: 67679467--67679581 Score: 142
Period size: 54 Copynumber: 2.1 Consensus size: 55
67679457 CCTTGACTTG
*
67679467 TAAAATTACCAAAGTACCCTTGATTTACAAAATTACCGTTTTACCCTCGATTTAC
1 TAAAATTACCAAAGTACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTAC
* **** * * *
67679522 -AAAATTATCGTTTTACCCTCGATTTATAGATTTACCGTTTTACCCTCGATTTAC
1 TAAAATTACCAAAGTACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTAC
67679576 TAAAAT
1 TAAAAT
67679582 ACCCCTGTAG
Statistics
Matches: 50, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
54 45 0.90
55 5 0.10
ACGTcount: A:0.32, C:0.22, G:0.08, T:0.38
Consensus pattern (55 bp):
TAAAATTACCAAAGTACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTAC
Found at i:67679584 original size:27 final size:27
Alignment explanation
Indices: 67679481--67679581 Score: 148
Period size: 27 Copynumber: 3.7 Consensus size: 27
67679471 ATTACCAAAG
*
67679481 TACCCTTGATTTACAAAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCGTTT
*
67679508 TACCCTCGATTTACAAAATTATCGTTT
1 TACCCTCGATTTACAAAATTACCGTTT
* * *
67679535 TACCCTCGATTTATAGATTTACCGTTT
1 TACCCTCGATTTACAAAATTACCGTTT
67679562 TACCCTCGATTTACTAAAAT
1 TACCCTCGATTTAC-AAAAT
67679582 ACCCCTGTAG
Statistics
Matches: 64, Mismatches: 9, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
27 61 0.95
28 3 0.05
ACGTcount: A:0.29, C:0.23, G:0.08, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACCGTTT
Found at i:67679602 original size:27 final size:27
Alignment explanation
Indices: 67679578--67679711 Score: 178
Period size: 27 Copynumber: 5.0 Consensus size: 27
67679568 CGATTTACTA
*
67679578 AAATACCCCTGTAGGGTAGAATTACCG
1 AAATACCCTTGTAGGGTAGAATTACCG
* *
67679605 AAATACCCCTGTAGGGTAGAATCACCG
1 AAATACCCTTGTAGGGTAGAATTACCG
* * * *
67679632 AAATACTCTTATAAGGTAGAAATACCG
1 AAATACCCTTGTAGGGTAGAATTACCG
67679659 AAATACCCTTGTAGGGTAGAATTACCG
1 AAATACCCTTGTAGGGTAGAATTACCG
* * *
67679686 AGATACCCTTGTGGGGTAAAATTACC
1 AAATACCCTTGTAGGGTAGAATTACC
67679712 ATTTTATCCC
Statistics
Matches: 93, Mismatches: 14, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 93 1.00
ACGTcount: A:0.35, C:0.20, G:0.21, T:0.24
Consensus pattern (27 bp):
AAATACCCTTGTAGGGTAGAATTACCG
Found at i:67679976 original size:27 final size:26
Alignment explanation
Indices: 67679938--67679988 Score: 75
Period size: 27 Copynumber: 1.9 Consensus size: 26
67679928 CTCGCTGCAA
*
67679938 TCTGGTGGCTTCGCCACATATATCTAT
1 TCTGGTGACTTCGCCACA-ATATCTAT
*
67679965 TCTGGTGACTTCGTCACAATATCT
1 TCTGGTGACTTCGCCACAATATCT
67679989 GGCAGCCTCG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 6 0.27
27 16 0.73
ACGTcount: A:0.20, C:0.25, G:0.18, T:0.37
Consensus pattern (26 bp):
TCTGGTGACTTCGCCACAATATCTAT
Found at i:67680241 original size:31 final size:31
Alignment explanation
Indices: 67680206--67680315 Score: 175
Period size: 31 Copynumber: 3.5 Consensus size: 31
67680196 TTGCATTCAC
* * *
67680206 ATTCTGATTTTGATTCTGTTACCTAATACTG
1 ATTCTGATTCTGATTCTGTCACCTAATTCTG
*
67680237 ATTCTGATTCTAATTCTGTCACCTAATTCTG
1 ATTCTGATTCTGATTCTGTCACCTAATTCTG
*
67680268 ATTCTGATTCTGATTCTGTCACCTGATTCTG
1 ATTCTGATTCTGATTCTGTCACCTAATTCTG
67680299 ATTCTGATTCTGATTCT
1 ATTCTGATTCTGATTCT
67680316 CATTTTGATT
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 73 1.00
ACGTcount: A:0.20, C:0.20, G:0.13, T:0.47
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTCACCTAATTCTG
Found at i:67680245 original size:6 final size:6
Alignment explanation
Indices: 67680206--67680336 Score: 90
Period size: 6 Copynumber: 21.3 Consensus size: 6
67680196 TTGCATTCAC
* * * *
67680206 ATTCTG ATTTTG ATTCTG -TTACCTA ATACTG ATTCTG ATTCTA ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * *
67680255 -TCACCTA ATTCTG ATTCTG ATTCTG ATTCTG -TCACCTG ATTCTG ATTCTG
1 AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG
* *
67680305 ATTCTG ATTCTC ATTTTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
67680337 AATGTTTCTT
Statistics
Matches: 96, Mismatches: 18, Indels: 22
0.71 0.13 0.16
Matches are distributed among these distances:
5 5 0.05
6 80 0.83
7 8 0.08
8 3 0.03
ACGTcount: A:0.20, C:0.19, G:0.13, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:67681323 original size:42 final size:43
Alignment explanation
Indices: 67681246--67681346 Score: 125
Period size: 42 Copynumber: 2.4 Consensus size: 43
67681236 TCCCTGACGT
* ** *
67681246 GGTCTTACATGTAATTCAATATCGATGCCTCTGTCCGAGACAG
1 GGTCTTACATGTAAATCAATATCGATGCCAATGTCCCAGACAG
*
67681289 GGTCTTACATG-AAATCAA-ATACGATGCCAATGTCCCAGACAT
1 GGTCTTACATGTAAATCAATAT-CGATGCCAATGTCCCAGACAG
*
67681331 GGTCTTATATGTAAAT
1 GGTCTTACATGTAAAT
67681347 ATCAATTGAG
Statistics
Matches: 50, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
41 2 0.04
42 33 0.66
43 15 0.30
ACGTcount: A:0.31, C:0.21, G:0.19, T:0.30
Consensus pattern (43 bp):
GGTCTTACATGTAAATCAATATCGATGCCAATGTCCCAGACAG
Found at i:67687770 original size:42 final size:41
Alignment explanation
Indices: 67687713--67687830 Score: 130
Period size: 42 Copynumber: 2.8 Consensus size: 41
67687703 GTAATTCAAT
* *
67687713 ATTGATGCCTCTGTCCCAGACAGGGTCTTACACAAA-ATCA
1 ATTGATGCCTATGTCCCAGACACGGTCTTACACAAATATCA
* * *
67687753 GATATGATGCCGATGTCCCAGACATGGTCTTATACATAAATATCA
1 -AT-TGATGCCTATGTCCCAGACACGGTC-T-TACACAAATATCA
* *
67687798 ATCGAGGCCTATGTCCCAGACACGGTCTTACAC
1 ATTGATGCCTATGTCCCAGACACGGTCTTACAC
67687831 GATATCTCAG
Statistics
Matches: 64, Mismatches: 9, Indels: 8
0.79 0.11 0.10
Matches are distributed among these distances:
41 6 0.09
42 23 0.36
43 22 0.34
44 9 0.14
45 4 0.06
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (41 bp):
ATTGATGCCTATGTCCCAGACACGGTCTTACACAAATATCA
Found at i:67690268 original size:28 final size:28
Alignment explanation
Indices: 67690228--67690281 Score: 108
Period size: 28 Copynumber: 1.9 Consensus size: 28
67690218 CATTCAGGTG
67690228 TTAGAATATATGTTAAGAAGCATGTGAT
1 TTAGAATATATGTTAAGAAGCATGTGAT
67690256 TTAGAATATATGTTAAGAAGCATGTG
1 TTAGAATATATGTTAAGAAGCATGTG
67690282 GTTGATTTCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.39, C:0.04, G:0.22, T:0.35
Consensus pattern (28 bp):
TTAGAATATATGTTAAGAAGCATGTGAT
Found at i:67693167 original size:30 final size:30
Alignment explanation
Indices: 67693133--67693195 Score: 117
Period size: 30 Copynumber: 2.1 Consensus size: 30
67693123 CATTCTGAGC
67693133 ATGTCCTCACAAATCACATACTTTCAGTAA
1 ATGTCCTCACAAATCACATACTTTCAGTAA
*
67693163 ATGTCCTCACTAATCACATACTTTCAGTAA
1 ATGTCCTCACAAATCACATACTTTCAGTAA
67693193 ATG
1 ATG
67693196 GAAACAGTGT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.35, C:0.25, G:0.08, T:0.32
Consensus pattern (30 bp):
ATGTCCTCACAAATCACATACTTTCAGTAA
Found at i:67693602 original size:37 final size:37
Alignment explanation
Indices: 67693552--67693625 Score: 148
Period size: 37 Copynumber: 2.0 Consensus size: 37
67693542 AATCAGCAAG
67693552 TTAATTTATCAAATATAACATGATATTTAATATTTTT
1 TTAATTTATCAAATATAACATGATATTTAATATTTTT
67693589 TTAATTTATCAAATATAACATGATATTTAATATTTTT
1 TTAATTTATCAAATATAACATGATATTTAATATTTTT
67693626 AAACAATTTT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.41, C:0.05, G:0.03, T:0.51
Consensus pattern (37 bp):
TTAATTTATCAAATATAACATGATATTTAATATTTTT
Found at i:67695885 original size:40 final size:40
Alignment explanation
Indices: 67695821--67696091 Score: 418
Period size: 40 Copynumber: 6.8 Consensus size: 40
67695811 ATTTGAATAC
* *
67695821 ATCCGGGCTAAGACCCGAACGCATTTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
*
67695861 ATCTGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
*
67695901 ATCCGAGCTAAGACCCGAAGGCATTTGTGCGAGTTGACATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG--ATAT
67695943 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
* *
67695983 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGAT-T
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
* *
67696022 ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
* * *
67696062 ACCCGGGTTAAGACCCGAAGGCAATTGTGC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
67696092 TTGTGGTTAT
Statistics
Matches: 212, Mismatches: 16, Indels: 6
0.91 0.07 0.03
Matches are distributed among these distances:
39 35 0.17
40 138 0.65
42 39 0.18
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
Found at i:67695973 original size:82 final size:80
Alignment explanation
Indices: 67695821--67696091 Score: 427
Period size: 82 Copynumber: 3.4 Consensus size: 80
67695811 ATTTGAATAC
* * *
67695821 ATCCGGGCTAAGACCCGAACGCATTTGTGCAAGTTGATATATCTGGGCTAAGACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATATATCCGGGCTAAGACCCGAAGGCATT
67695886 TGTGCGAGTTGATAT
66 TGTGCGAGTTGATAT
* * *
67695901 ATCCGAGCTAAGACCCGAAGGCATTTGTGCGAGTTGACATATATCCGGGCTAAGACCCGAAGGCA
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTG--ATATATCCGGGCTAAGACCCGAAGGCA
67695966 TTTGTGCGAGTTGATAT
64 TTTGTGCGAGTTGATAT
67695983 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGAT-TATCCGGGCTAAGACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATATATCCGGGCTAAGACCCGAAGGCATT
* *
67696047 CGTGCGAGTTGCTAT
66 TGTGCGAGTTGATAT
* *
67696062 ACCCGGGTTAAGACCCGAAGGCAATTGTGC
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGC
67696092 TTGTGGTTAT
Statistics
Matches: 178, Mismatches: 11, Indels: 5
0.92 0.06 0.03
Matches are distributed among these distances:
79 67 0.38
80 35 0.20
82 76 0.43
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATATATCCGGGCTAAGACCCGAAGGCATT
TGTGCGAGTTGATAT
Found at i:67696120 original size:79 final size:80
Alignment explanation
Indices: 67695821--67696111 Score: 406
Period size: 79 Copynumber: 3.6 Consensus size: 80
67695811 ATTTGAATAC
* * * *
67695821 ATCCGGGCTAAGACCCGAACGCATTTGTGCAAGTTGATATATCTGGGCTAAGACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGGATATATCCGGGCTAAGACCCGAAGGCATT
67695886 TGTGCGAGTTGATAT
66 TGTGCGAGTTGATAT
* * * *
67695901 ATCCGAGCTAAGACCCGAAGGCATTTGTGCGAGTTGACATATATCCGGGCTAAGACCCGAAGGCA
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAG-TG-GATATATCCGGGCTAAGACCCGAAGGCA
67695966 TTTGTGCGAGTTGATAT
64 TTTGTGCGAGTTGATAT
*
67695983 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGAT-TATCCGGGCTAAGACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGGATATATCCGGGCTAAGACCCGAAGGCATT
* *
67696047 CGTGCGAGTTGCTAT
66 TGTGCGAGTTGATAT
* * ** *
67696062 ACCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATATCC-GGCTAA
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGGATATATCCGGGCTAA
67696112 ATTCCGAAGA
Statistics
Matches: 189, Mismatches: 19, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
79 77 0.41
80 37 0.20
81 2 0.01
82 73 0.39
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGGATATATCCGGGCTAAGACCCGAAGGCATT
TGTGCGAGTTGATAT
Found at i:67700511 original size:31 final size:31
Alignment explanation
Indices: 67700476--67700537 Score: 97
Period size: 31 Copynumber: 2.0 Consensus size: 31
67700466 ACTTCTATTT
* *
67700476 TATTCACATCCAATGGCCATAATTAAGACCA
1 TATTCACATCCAATCGCCATAATTAAAACCA
*
67700507 TATTCACATCCAATCGCCGTAATTAAAACCA
1 TATTCACATCCAATCGCCATAATTAAAACCA
67700538 ACAATGTAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.39, C:0.27, G:0.08, T:0.26
Consensus pattern (31 bp):
TATTCACATCCAATCGCCATAATTAAAACCA
Found at i:67711365 original size:7 final size:7
Alignment explanation
Indices: 67711338--67711377 Score: 53
Period size: 7 Copynumber: 5.6 Consensus size: 7
67711328 ACAAACACCC
67711338 AAATTAA
1 AAATTAA
* *
67711345 ATACTTAT
1 A-AATTAA
67711353 AAATTAA
1 AAATTAA
67711360 AAATTAA
1 AAATTAA
67711367 AAATTAA
1 AAATTAA
67711374 AAAT
1 AAAT
67711378 GAAAGCAAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
7 23 0.82
8 5 0.18
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.33
Consensus pattern (7 bp):
AAATTAA
Found at i:67716672 original size:46 final size:46
Alignment explanation
Indices: 67716605--67716780 Score: 194
Period size: 46 Copynumber: 3.8 Consensus size: 46
67716595 TGTAACCCGC
* *
67716605 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
* * * * *
67716651 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGAATGCCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-TTCGCAT
* * * * *
67716697 ACATTTCA-CGAACTCGAACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCA--TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
*
67716744 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
67716781 TGCTCAACCA
Statistics
Matches: 103, Mismatches: 22, Indels: 10
0.76 0.16 0.07
Matches are distributed among these distances:
45 2 0.02
46 67 0.65
47 32 0.31
48 2 0.02
ACGTcount: A:0.31, C:0.28, G:0.19, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
Found at i:67716772 original size:93 final size:93
Alignment explanation
Indices: 67716613--67716783 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
67716603 GCCCATAAGT
* * * *
67716613 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGAACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
67716678 CGAGTTCGAATGCCTAGTTACATTTCAC
66 CGAGTTCGAATGCCTAGTTACATTTCAC
*
67716706 GAACTCGAACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCGAACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
*
67716771 CGAGTTCGGATGC
66 CGAGTTCGAATGC
67716784 TCAACCATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGAACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
CGAGTTCGAATGCCTAGTTACATTTCAC
Found at i:67719516 original size:27 final size:27
Alignment explanation
Indices: 67719485--67719539 Score: 101
Period size: 27 Copynumber: 2.0 Consensus size: 27
67719475 TCAAATTACC
*
67719485 CAAAATTTGAGCTAGTGGCCGGCCATG
1 CAAAATATGAGCTAGTGGCCGGCCATG
67719512 CAAAATATGAGCTAGTGGCCGGCCATG
1 CAAAATATGAGCTAGTGGCCGGCCATG
67719539 C
1 C
67719540 TATGGGTGGA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.27, C:0.24, G:0.29, T:0.20
Consensus pattern (27 bp):
CAAAATATGAGCTAGTGGCCGGCCATG
Found at i:67721596 original size:47 final size:47
Alignment explanation
Indices: 67721530--67721769 Score: 358
Period size: 47 Copynumber: 5.1 Consensus size: 47
67721520 GAAATGATAG
67721530 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
67721577 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG-A
67721625 TAAGGCCTAATGGCCGATGTGCATGAATGTGAAAGTGTATATATGT-A
1 TAAGGCCTAATGGCCGATGTG-ATGAATGTGAAAGTGTATATATGTGA
67721672 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*** * * * * * *
67721719 CGGGGCCGAGA-GGCCAACGTGATGGATGTGAAAGTGCATAAATGTGA
1 TAAGGCCTA-ATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
67721766 TAAG
1 TAAG
67721770 TCCCGAAGGG
Statistics
Matches: 177, Mismatches: 12, Indels: 8
0.90 0.06 0.04
Matches are distributed among these distances:
46 24 0.14
47 106 0.60
48 23 0.13
49 24 0.14
ACGTcount: A:0.32, C:0.10, G:0.31, T:0.27
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:67721693 original size:95 final size:95
Alignment explanation
Indices: 67721530--67721718 Score: 362
Period size: 95 Copynumber: 2.0 Consensus size: 95
67721520 GAAATGATAG
67721530 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
67721595 GTGATGAATGTGAAAGTGTATATATGTGAA
66 GTGATGAATGTGAAAGTGTATATATGTGAA
67721625 TAAGGCCTAATGGCCGATGTGCATGAATGTGAAAGTGTATATATGT-ATAAGGCCTAATGGCCGA
1 TAAGGCCTAATGGCCGATGTG-ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGA
67721689 TGTGATGAATGTGAAAGTGTATATATGTGA
65 TGTGATGAATGTGAAAGTGTATATATGTGA
67721719 CGGGGCCGAG
Statistics
Matches: 93, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
95 69 0.74
96 24 0.26
ACGTcount: A:0.32, C:0.09, G:0.29, T:0.30
Consensus pattern (95 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
GTGATGAATGTGAAAGTGTATATATGTGAA
Found at i:67721944 original size:36 final size:37
Alignment explanation
Indices: 67721889--67721966 Score: 122
Period size: 36 Copynumber: 2.1 Consensus size: 37
67721879 CCGAGCTCTA
* *
67721889 AAGACCCGATGACTACGTGTGG-GATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
67721925 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
67721962 AAGAC
1 AAGAC
67721967 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
36 20 0.53
37 18 0.47
ACGTcount: A:0.24, C:0.19, G:0.31, T:0.26
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:67723896 original size:29 final size:29
Alignment explanation
Indices: 67723861--67723934 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
67723851 GTTGTGAGAT
* *
67723861 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
67723890 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
67723919 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
67723935 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:67724370 original size:40 final size:40
Alignment explanation
Indices: 67724247--67724442 Score: 177
Period size: 40 Copynumber: 4.9 Consensus size: 40
67724237 TCGAATGATG
** *
67724247 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCT-AGTGA-TATA
* ** * *
67724287 TCCGGACTAAGAT-CCGAAG-GCATTGGTG-TGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGAGCATTCATGCT-AGTGA-TATA
*
67724327 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* *
67724367 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* * * *
67724407 TCCGTGCTAAATCCCGAAGAGCAATCATGCTGGTGA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
67724443 AGTGTATTCG
Statistics
Matches: 130, Mismatches: 21, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
39 1 0.01
40 111 0.85
41 17 0.13
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
Found at i:67724383 original size:80 final size:81
Alignment explanation
Indices: 67724247--67724442 Score: 213
Period size: 80 Copynumber: 2.4 Consensus size: 81
67724237 TCGAATGATG
**
67724247 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAG-GCA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCT-AGTGACCATATCCGGACTAAGATCCGAAGAGCA
* *
67724309 TTGGTG-TGAGTTACTAAA
65 TTCGTGCT-AGTGA-TAAA
** * *
67724327 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA-TGTATCCGGGCTAAGTTCCGAAGAGCAT
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGACCATATCCGGACTAAGATCCGAAGAGCAT
*
67724391 TCGTGCTAGTGATATA
66 TCGTGCTAGTGATAAA
* * * *
67724407 TCCGTGCTAAATCCCGAAGAGCAATCATGCTGGTGA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
67724443 AGTGTATTCG
Statistics
Matches: 99, Mismatches: 13, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
80 73 0.74
81 19 0.19
82 7 0.07
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGACCATATCCGGACTAAGATCCGAAGAGCAT
TCGTGCTAGTGATAAA
Found at i:67727882 original size:25 final size:25
Alignment explanation
Indices: 67727854--67727932 Score: 65
Period size: 25 Copynumber: 3.3 Consensus size: 25
67727844 CTAATGGCCG
67727854 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
* *** ****
67727879 ATGTGAT-AAGGCCTAA-TG-GCCG
1 ATGTGATGAATGTGAAAGTGTATAT
67727901 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
67727926 ATGTGAT
1 ATGTGAT
67727933 AAGGCCTAAT
Statistics
Matches: 35, Mismatches: 16, Indels: 6
0.61 0.28 0.11
Matches are distributed among these distances:
22 7 0.20
23 7 0.20
24 7 0.20
25 14 0.40
ACGTcount: A:0.33, C:0.05, G:0.29, T:0.33
Consensus pattern (25 bp):
ATGTGATGAATGTGAAAGTGTATAT
Found at i:67727904 original size:47 final size:47
Alignment explanation
Indices: 67727838--67728262 Score: 739
Period size: 47 Copynumber: 9.1 Consensus size: 47
67727828 GAAATGATAG
67727838 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
67727885 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
67727932 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
67727977 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
67728024 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
67728071 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
67728118 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
67728165 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*** * * * * * *
67728212 CGGGGCCGAAAGGCCAACGTGATGGATGTGAAAGT-TCATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT-ATATATGTGA
67728259 TAAG
1 TAAG
67728263 TCCCGAAGGG
Statistics
Matches: 363, Mismatches: 12, Indels: 6
0.95 0.03 0.02
Matches are distributed among these distances:
45 45 0.12
46 1 0.00
47 317 0.87
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.28
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:67727954 original size:22 final size:22
Alignment explanation
Indices: 67727926--67727999 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
67727916 AAGTGTATAT
67727926 ATGTGATAAGGCCTAATGGCCG
1 ATGTGATAAGGCCTAATGGCCG
* * ***
67727948 ATGTGATGAATG--TGAAAGTGTAT
1 ATGTGAT-AAGGCCT-AATG-GCCG
67727971 ATGTGATAAGGCCTAATGGCCG
1 ATGTGATAAGGCCTAATGGCCG
67727993 ATGTGAT
1 ATGTGAT
67728000 GAATGTGAAA
Statistics
Matches: 37, Mismatches: 10, Indels: 10
0.65 0.18 0.18
Matches are distributed among these distances:
21 1 0.03
22 21 0.57
23 14 0.38
24 1 0.03
ACGTcount: A:0.30, C:0.11, G:0.31, T:0.28
Consensus pattern (22 bp):
ATGTGATAAGGCCTAATGGCCG
Found at i:67728437 original size:37 final size:37
Alignment explanation
Indices: 67728381--67728459 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
67728371 CCGAGCTCTA
* *
67728381 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
67728418 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
67728455 AAGAC
1 AAGAC
67728460 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:67734841 original size:45 final size:44
Alignment explanation
Indices: 67734768--67734938 Score: 204
Period size: 45 Copynumber: 3.8 Consensus size: 44
67734758 TGTAACCCGC
* *
67734768 CCATAAGTGAACTCGACTCAACTCAACGAGCTCGGCGTTCGCAT
1 CCATAAGTGAACTCGACTCAACTCAACGAGTTCGGCATTCGCAT
*
67734812 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG-ATGC-CTAGTT
1 CCATAAGTGAACTC-GACTCAACTCAACGAGTTCGGCATTCGC-A--T
* * *
67734858 ACATTCA-CGAACTCGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCA-TAAGTGAACTCGACTCAACTCAACGAGTTCGG-CATTCGCAT
67734903 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTC-GACTCAACTCAACGAGTTCGG
67734939 ATGCTCAACC
Statistics
Matches: 107, Mismatches: 10, Indels: 18
0.79 0.07 0.13
Matches are distributed among these distances:
43 1 0.01
44 19 0.18
45 50 0.47
46 30 0.28
47 6 0.06
48 1 0.01
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (44 bp):
CCATAAGTGAACTCGACTCAACTCAACGAGTTCGGCATTCGCAT
Found at i:67734930 original size:91 final size:90
Alignment explanation
Indices: 67734776--67734942 Score: 298
Period size: 91 Copynumber: 1.8 Consensus size: 90
67734766 GCCCATAAGT
* *
67734776 GAACTCGACTCAACTCAACGAGCTCGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAACG
1 GAACTCGACTCAACTCAACGAGCTCGGCATTCGCATCCATAAGTGAACTCAGACTCAACTCAACG
67734841 AGTTCGGATGCCTAGTTACATTCAC
66 AGTTCGGATGCCTAGTTACATTCAC
*
67734866 GAACTCGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAAC
1 GAACTCGACTCAACTCAACGAGCTCGG-CATTCGCATCCATAAGTGAACTCAGACTCAACTCAAC
67734931 GAGTTCGGATGC
65 GAGTTCGGATGC
67734943 TCAACCTTCC
Statistics
Matches: 73, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
90 26 0.36
91 47 0.64
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (90 bp):
GAACTCGACTCAACTCAACGAGCTCGGCATTCGCATCCATAAGTGAACTCAGACTCAACTCAACG
AGTTCGGATGCCTAGTTACATTCAC
Found at i:67742045 original size:42 final size:42
Alignment explanation
Indices: 67741987--67742095 Score: 141
Period size: 42 Copynumber: 2.6 Consensus size: 42
67741977 GAATGCCAAA
* *
67741987 GTCCCAGACGTGGTCTTACATGTAATCAAATATCGATGCC-ACT
1 GTCCCAGACATGGTCTTACACGTAATCAAATAT-GATGCCGA-T
* * *
67742030 GTCCTAGACA-GGTCTTACAGGAAATCAAATATGATGCCGAT
1 GTCCCAGACATGGTCTTACACGTAATCAAATATGATGCCGAT
67742071 GTCCCAGACATGGTCTTACACGTAA
1 GTCCCAGACATGGTCTTACACGTAA
67742096 ATCATAAGTC
Statistics
Matches: 57, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
41 16 0.28
42 33 0.58
43 8 0.14
ACGTcount: A:0.30, C:0.24, G:0.20, T:0.26
Consensus pattern (42 bp):
GTCCCAGACATGGTCTTACACGTAATCAAATATGATGCCGAT
Found at i:67745259 original size:46 final size:46
Alignment explanation
Indices: 67745206--67745342 Score: 202
Period size: 46 Copynumber: 3.0 Consensus size: 46
67745196 TATATATACA
* * * *
67745206 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* *
67745252 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* *
67745298 TATCTCATACACATTTCGCATTAGCCATTCGGCCTTACCACATAT
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATAT
67745343 ATACATGTTC
Statistics
Matches: 81, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 81 1.00
ACGTcount: A:0.26, C:0.31, G:0.09, T:0.34
Consensus pattern (46 bp):
CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
Found at i:67745377 original size:47 final size:47
Alignment explanation
Indices: 67745270--67745464 Score: 196
Period size: 46 Copynumber: 4.1 Consensus size: 47
67745260 ACACGTTTCG
* * * * * * *
67745270 CATTAGCCATTCGGCTTTACCTCATATCTATCTCATACACATT--TCG
1 CATTAGCCATTCGGCCTTACCACATATATA-CACGTTCACATTCATCA
*
67745316 CATTAGCCATTCGGCCTTACCACATATATACATGTTCACATTCATCA
1 CATTAGCCATTCGGCCTTACCACATATATACACGTTCACATTCATCA
* *
67745363 CATTGGCCATTCGGCCTTATCACACATATATATACAGGTTCACATTCATCA
1 CATTAGCCATTCGGCCTTA-C-CAC--ATATATACACGTTCACATTCATCA
* * * *
67745414 CATTTTGCCATTCGGCCTTATCTCATATATACACATTCACATTCATCA
1 CA-TTAGCCATTCGGCCTTACCACATATATACACGTTCACATTCATCA
67745462 CAT
1 CAT
67745465 AACATCCTAA
Statistics
Matches: 127, Mismatches: 15, Indels: 13
0.82 0.10 0.08
Matches are distributed among these distances:
45 8 0.06
46 27 0.21
47 21 0.17
48 25 0.20
49 3 0.02
50 2 0.02
51 25 0.20
52 16 0.13
ACGTcount: A:0.28, C:0.29, G:0.09, T:0.34
Consensus pattern (47 bp):
CATTAGCCATTCGGCCTTACCACATATATACACGTTCACATTCATCA
Found at i:67745409 original size:51 final size:49
Alignment explanation
Indices: 67745270--67745464 Score: 192
Period size: 51 Copynumber: 4.1 Consensus size: 49
67745260 ACACGTTTCG
* * * * * *
67745270 CATTAGCCATTCGGCTTTA-CCTCATATCTATCTCA-TACACATT--TCG
1 CATTAGCCATTCGGCCTTATCCACATATATAT-ACAGTTCACATTCATCA
67745316 CATTAGCCATTCGGCCTTA-CCAC--ATATATACATGTTCACATTCATCA
1 CATTAGCCATTCGGCCTTATCCACATATATATACA-GTTCACATTCATCA
*
67745363 CATTGGCCATTCGGCCTTATCACACATATATATACAGGTTCACATTCATCA
1 CATTAGCCATTCGGCCTTATC-CACATATATATACA-GTTCACATTCATCA
* * *
67745414 CATTTTGCCATTCGGCCTTAT-CTCATATATACACA-TTCACATTCATCA
1 CA-TTAGCCATTCGGCCTTATCCACATATATATACAGTTCACATTCATCA
67745462 CAT
1 CAT
67745465 AACATCCTAA
Statistics
Matches: 129, Mismatches: 11, Indels: 17
0.82 0.07 0.11
Matches are distributed among these distances:
43 2 0.02
44 5 0.04
45 7 0.05
46 21 0.16
47 21 0.16
48 16 0.12
49 3 0.02
50 12 0.09
51 25 0.19
52 17 0.13
ACGTcount: A:0.28, C:0.29, G:0.09, T:0.34
Consensus pattern (49 bp):
CATTAGCCATTCGGCCTTATCCACATATATATACAGTTCACATTCATCA
Found at i:67745460 original size:48 final size:48
Alignment explanation
Indices: 67745321--67745464 Score: 191
Period size: 52 Copynumber: 2.9 Consensus size: 48
67745311 TTTCGCATTA
* **
67745321 GCCATTCGGCCTTACCACATATATACATGTTCACATTCATCACA-TTG
1 GCCATTCGGCCTTATCACATATATACACATTCACATTCATCACATTTG
* *
67745368 GCCATTCGGCCTTATCACACATATATATACAGGTTCACATTCATCACATTTT
1 GCCATTCGGCCTTAT--CACATATATACACA--TTCACATTCATCACATTTG
*
67745420 GCCATTCGGCCTTATCTCATATATACACATTCACATTCATCACAT
1 GCCATTCGGCCTTATCACATATATACACATTCACATTCATCACAT
67745465 AACATCCTAA
Statistics
Matches: 85, Mismatches: 7, Indels: 9
0.84 0.07 0.09
Matches are distributed among these distances:
47 14 0.16
48 16 0.19
49 11 0.13
50 12 0.14
51 15 0.18
52 17 0.20
ACGTcount: A:0.28, C:0.29, G:0.09, T:0.33
Consensus pattern (48 bp):
GCCATTCGGCCTTATCACATATATACACATTCACATTCATCACATTTG
Found at i:67745465 original size:25 final size:25
Alignment explanation
Indices: 67745385--67745465 Score: 60
Period size: 25 Copynumber: 3.2 Consensus size: 25
67745375 GGCCTTATCA
*
67745385 CACATATATATACAGGTTCACATTCAT
1 CACATATATACACA--TTCACATTCAT
* * * *
67745412 CACAT-TTTGC-CATTCGGCCTT-AT
1 CACATATATACACATTC-ACATTCAT
*
67745435 CTCATATATACACATTCACATTCAT
1 CACATATATACACATTCACATTCAT
67745460 CACATA
1 CACATA
67745466 ACATCCTAAA
Statistics
Matches: 39, Mismatches: 11, Indels: 10
0.65 0.18 0.17
Matches are distributed among these distances:
23 9 0.23
24 9 0.23
25 14 0.36
26 2 0.05
27 5 0.13
ACGTcount: A:0.32, C:0.27, G:0.06, T:0.35
Consensus pattern (25 bp):
CACATATATACACATTCACATTCAT
Found at i:67759833 original size:40 final size:39
Alignment explanation
Indices: 67759631--67759853 Score: 258
Period size: 40 Copynumber: 5.7 Consensus size: 39
67759621 TTGAATGATG
* * *
67759631 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-A
* *
67759671 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA
*
67759710 TTCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
67759749 TTCCGGGCTAA--CCCGAAGGCATTTGTGCGAGTTACTAAA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AA
* *
67759788 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-A
* *
67759828 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
67759854 AACGAGTAGC
Statistics
Matches: 162, Mismatches: 13, Indels: 16
0.85 0.07 0.08
Matches are distributed among these distances:
38 33 0.20
39 41 0.25
40 80 0.49
41 8 0.05
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
Done.