Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 210 of 349
Found at i:67763098 original size:40 final size:40
Alignment explanation
Indices: 67763043--67763205 Score: 265
Period size: 40 Copynumber: 4.1 Consensus size: 40
67763033 CGGATGATAA
67763043 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
67763083 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
67763123 CTGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
67763163 CCGGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
67763203 CCG
1 CCG
67763206 ATTAAATCCC
Statistics
Matches: 115, Mismatches: 7, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
39 2 0.02
40 113 0.98
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:67771108 original size:40 final size:40
Alignment explanation
Indices: 67771053--67771227 Score: 255
Period size: 40 Copynumber: 4.4 Consensus size: 40
67771043 GATGATAACC
67771053 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
67771093 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
* * *
67771133 GGCTAAGTCTCGAACGCAATTGTGCGAGTTACTATATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
* * *
67771173 GGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATATCC-
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCG
* *
67771212 GGTTAAATCCCGAAGG
1 GGCTAAGTCCCGAAGG
67771228 TACTTGGCTT
Statistics
Matches: 122, Mismatches: 12, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
39 15 0.12
40 107 0.88
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
Found at i:67773068 original size:40 final size:40
Alignment explanation
Indices: 67772985--67773246 Score: 316
Period size: 40 Copynumber: 6.6 Consensus size: 40
67772975 TTGAATGCTG
* * * * * *
67772985 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
67773025 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
67773065 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
67773105 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
67773145 TCCGGGTTAAGTCCCGAAGGCA-TCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
67773184 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
67773223 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
67773247 TGAACGAGGA
Statistics
Matches: 199, Mismatches: 19, Indels: 9
0.88 0.08 0.04
Matches are distributed among these distances:
39 72 0.36
40 119 0.60
41 8 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:67773270 original size:78 final size:79
Alignment explanation
Indices: 67772986--67773281 Score: 262
Period size: 80 Copynumber: 3.7 Consensus size: 79
67772976 TGAATGCTGT
* * * * * * *
67772986 CCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGA-ATATATCCGGATTAAGAT-CCGAAGGCCTT
1 CCGGGCTAAGTCCCGAAGGCATCGTGC-GAG-GAGCTAAATCCGGGTTAAG-TCCCGAAGGCATT
* * *
67773049 TGTGCGAGATACTAAAT
63 CGTGCGAGTTACTAAAA
* * *
67773066 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTA-TTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 CCGGGCTAAGTCCCGAAGGCA-TCGTGCGAG-GAGCTAAATCCGGGTTAAGTCCCGAAGGCATTC
* *
67773130 GTGCGAGTTATTAAAT
64 GTGCGAGTTACTAAAA
* ** * *
67773146 CCGGGTTAAGTCCCGAAGGCATCGTGCGAGTTGTTAAATCCGGGTTATGTCCCGAAGGCATT-GT
1 CCGGGCTAAGTCCCGAAGGCATCGTGCGAGGAGCTAAATCCGGGTTAAGTCCCGAAGGCATTCGT
*
67773210 GTGAGTTACTAAAA
66 GCGAGTTACTAAAA
* * * *
67773224 CCGGGCTATGTCCCGAAGGCAT-TTGAACGAGGAGCTATATCC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATCGTG--CGAGGAGCTAAATCCGGGTTAAGTCCCGAAGG
67773282 TACGTGATTT
Statistics
Matches: 185, Mismatches: 26, Indels: 12
0.83 0.12 0.05
Matches are distributed among these distances:
77 2 0.01
78 48 0.26
79 49 0.26
80 81 0.44
81 5 0.03
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGGGCTAAGTCCCGAAGGCATCGTGCGAGGAGCTAAATCCGGGTTAAGTCCCGAAGGCATTCGT
GCGAGTTACTAAAA
Found at i:67781003 original size:40 final size:40
Alignment explanation
Indices: 67780920--67781181 Score: 316
Period size: 40 Copynumber: 6.6 Consensus size: 40
67780910 TTGAATGCTG
* * * * * *
67780920 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
67780960 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
67781000 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
67781040 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
67781080 TCCGGGTTAAGTCCCGAAGGCA-TCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
67781119 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
67781158 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
67781182 TGAACGAGGA
Statistics
Matches: 199, Mismatches: 19, Indels: 9
0.88 0.08 0.04
Matches are distributed among these distances:
39 72 0.36
40 119 0.60
41 8 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:67781205 original size:78 final size:79
Alignment explanation
Indices: 67780921--67781216 Score: 262
Period size: 80 Copynumber: 3.7 Consensus size: 79
67780911 TGAATGCTGT
* * * * * * *
67780921 CCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGA-ATATATCCGGATTAAGAT-CCGAAGGCCTT
1 CCGGGCTAAGTCCCGAAGGCATCGTGC-GAG-GAGCTAAATCCGGGTTAAG-TCCCGAAGGCATT
* * *
67780984 TGTGCGAGATACTAAAT
63 CGTGCGAGTTACTAAAA
* * *
67781001 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTA-TTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 CCGGGCTAAGTCCCGAAGGCA-TCGTGCGAG-GAGCTAAATCCGGGTTAAGTCCCGAAGGCATTC
* *
67781065 GTGCGAGTTATTAAAT
64 GTGCGAGTTACTAAAA
* ** * *
67781081 CCGGGTTAAGTCCCGAAGGCATCGTGCGAGTTGTTAAATCCGGGTTATGTCCCGAAGGCATT-GT
1 CCGGGCTAAGTCCCGAAGGCATCGTGCGAGGAGCTAAATCCGGGTTAAGTCCCGAAGGCATTCGT
*
67781145 GTGAGTTACTAAAA
66 GCGAGTTACTAAAA
* * * *
67781159 CCGGGCTATGTCCCGAAGGCAT-TTGAACGAGGAGCTATATCC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATCGTG--CGAGGAGCTAAATCCGGGTTAAGTCCCGAAGG
67781217 TACGTGATTT
Statistics
Matches: 185, Mismatches: 26, Indels: 12
0.83 0.12 0.05
Matches are distributed among these distances:
77 2 0.01
78 48 0.26
79 49 0.26
80 81 0.44
81 5 0.03
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGGGCTAAGTCCCGAAGGCATCGTGCGAGGAGCTAAATCCGGGTTAAGTCCCGAAGGCATTCGT
GCGAGTTACTAAAA
Found at i:67784316 original size:13 final size:13
Alignment explanation
Indices: 67784294--67784326 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
67784284 AAGGGTTTGT
67784294 TTAT-TAAACTAA
1 TTATCTAAACTAA
67784306 TTATCTAAACTAA
1 TTATCTAAACTAA
*
67784319 TTAACTAA
1 TTATCTAA
67784327 TTTAATTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:67785547 original size:56 final size:56
Alignment explanation
Indices: 67785461--67785580 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
67785451 ACAAGGGATG
67785461 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
67785517 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
67785573 ATGGGCAA
1 ATGGGCAA
67785581 TAAACTAATA
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:67786847 original size:78 final size:78
Alignment explanation
Indices: 67786708--67786930 Score: 288
Period size: 78 Copynumber: 2.8 Consensus size: 78
67786698 TCGAATGATG
* * * * * *
67786708 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTGTGC-GAGTTACTAAATCCGGGCTAAG-TCCGAAGGCATTT
*
67786773 GTGCGAGATACTAAT
64 GTGCGAGATACTAAA
*
67786788 TCCGGGCTAAG-CCCGAAGGCATTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCGAGTTACTAAATCCGGGCTAAGT-CCGAAGGCATTTG
*
67786852 TGCGAGTTACTAAA
65 TGCGAGATACTAAA
* *
67786866 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATGTCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCA-TTGTGCGAGTTACTA-AATCCGGGCTAAGTCCGAAGGCATTT
67786930 G
64 G
67786931 AACGAGTAGC
Statistics
Matches: 127, Mismatches: 12, Indels: 9
0.86 0.08 0.06
Matches are distributed among these distances:
77 1 0.01
78 51 0.40
79 38 0.30
80 35 0.28
81 2 0.02
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (78 bp):
TCCGGGCTAAGTCCCGAAGGCATTGTGCGAGTTACTAAATCCGGGCTAAGTCCGAAGGCATTTGT
GCGAGATACTAAA
Found at i:67786944 original size:39 final size:40
Alignment explanation
Indices: 67786708--67786930 Score: 287
Period size: 40 Copynumber: 5.7 Consensus size: 40
67786698 TCGAATGATG
* * * *
67786708 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
67786748 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
67786788 TCCGGGCTAAG-CCCGAAGGCA-TTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
67786826 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
67786866 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
67786907 -CCGGGCTATGT-CCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
67786931 AACGAGTAGC
Statistics
Matches: 164, Mismatches: 13, Indels: 13
0.86 0.07 0.07
Matches are distributed among these distances:
38 25 0.15
39 32 0.20
40 97 0.59
41 10 0.06
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:67786953 original size:118 final size:118
Alignment explanation
Indices: 67786708--67786928 Score: 295
Period size: 118 Copynumber: 1.9 Consensus size: 118
67786698 TCGAATGATG
* *
67786708 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
*
67786773 GTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGTGCGAGTTACTAAA
66 GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGTGCGAGTTACTAAA
* * * **
67786826 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
* * *
67786889 TTGTGCGAGTTACT-ATAACCGGGCTATGTCCGAAGGCATT
64 TTGTGCGAGATACTAAT-ACCGGGCTAAGCCCGAAGGCATT
67786929 TGAACGAGTA
Statistics
Matches: 89, Mismatches: 11, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
117 3 0.03
118 79 0.89
119 7 0.08
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (118 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGTGCGAGTTACTAAA
Found at i:67786960 original size:39 final size:40
Alignment explanation
Indices: 67786708--67786963 Score: 231
Period size: 40 Copynumber: 6.5 Consensus size: 40
67786698 TCGAATGATG
* * * * * *
67786708 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGTTAAATCCCGAAGGCATTTGTGC-GAGTTACTAAA
** * *
67786748 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGTTAA-ATCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
67786788 TCCGGGCT-AAGCCCGAAGGCA-TTGTGCGAGTTACTAAA
1 TCCGGGTTAAATCCCGAAGGCATTTGTGCGAGTTACTAAA
*
67786826 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAATCCCGAAGGCATTTGTGCGAGTTACTAAA
*
67786866 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGTTAAATCCCGAAGGCATTTGTGCGAGTTACTA-AA
* ** ** *
67786907 -CCGGGCTATGT-CCGAAGGCATTTGAACGAG-TAGCTATA
1 TCCGGGTTAAATCCCGAAGGCATTTGTGCGAGTTA-CTAAA
*
67786945 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAATCCCGAAGG
67786964 TACGTGATTT
Statistics
Matches: 184, Mismatches: 23, Indels: 19
0.81 0.10 0.08
Matches are distributed among these distances:
38 31 0.17
39 50 0.27
40 93 0.51
41 10 0.05
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGTTAAATCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:67790368 original size:6 final size:5
Alignment explanation
Indices: 67790339--67790418 Score: 56
Period size: 6 Copynumber: 14.8 Consensus size: 5
67790329 TATGTCTTTC
* *
67790339 AAAAT AAAAT --AAT AAAATT GAAAT GAAAATT AAAAT CAAAAGA AAAAT
1 AAAAT AAAAT AAAAT AAAA-T AAAAT -AAAA-T AAAAT -AAAA-T AAAAT
67790387 CAAAAT AAAAT AAAAT AAAAAT AAGAAT AAAA
1 -AAAAT AAAAT AAAAT -AAAAT AA-AAT AAAA
67790419 AAATAGGAGG
Statistics
Matches: 61, Mismatches: 4, Indels: 20
0.72 0.05 0.24
Matches are distributed among these distances:
3 3 0.05
5 23 0.38
6 34 0.56
7 1 0.02
ACGTcount: A:0.74, C:0.03, G:0.05, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:67794203 original size:48 final size:48
Alignment explanation
Indices: 67794142--67794288 Score: 222
Period size: 48 Copynumber: 3.1 Consensus size: 48
67794132 CAAGATAAAT
* * *
67794142 ATATATATGTGTGGTAAGGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* * * *
67794190 ATATGTATATGTGGTAAAGACGAATGGCTAATATGAAATATGTTTGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
67794238 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
67794286 ATA
1 ATA
67794289 AAGCCGAATG
Statistics
Matches: 87, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
48 87 1.00
ACGTcount: A:0.37, C:0.05, G:0.26, T:0.32
Consensus pattern (48 bp):
ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
Found at i:67794291 original size:35 final size:35
Alignment explanation
Indices: 67794240--67794323 Score: 123
Period size: 35 Copynumber: 2.4 Consensus size: 35
67794230 TGTTTGAGAT
* * **
67794240 ATATATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATATGAGATAAAGCCGAATGGCTAACATGAA
67794275 ATATATATGAGATAAAGCCGAATGGCTAACATGAA
1 ATATATATGAGATAAAGCCGAATGGCTAACATGAA
*
67794310 ATATGTATGAGATA
1 ATATATATGAGATA
67794324 TATATGTGTG
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
35 44 1.00
ACGTcount: A:0.42, C:0.08, G:0.23, T:0.27
Consensus pattern (35 bp):
ATATATATGAGATAAAGCCGAATGGCTAACATGAA
Found at i:67794297 original size:83 final size:83
Alignment explanation
Indices: 67794195--67794371 Score: 264
Period size: 83 Copynumber: 2.1 Consensus size: 83
67794185 ATGAGATATG
* * * *
67794195 TATATGTGGTAAAGACGAATGGCTAATATGAAATATGTTTGAGATATATATATGTGGTAAAGCCG
1 TATATGAGATAAAGACGAATGGCTAACATGAAATATGTATGAGATATATATATGTGGTAAAGCCG
67794260 AATGGCTAATGTGAAATA
66 AATGGCTAATGTGAAATA
* * *
67794278 TATATGAGATAAAGCCGAATGGCTAACATGAAATATGTATGAGATATATATGTGTGGTAAGGCCG
1 TATATGAGATAAAGACGAATGGCTAACATGAAATATGTATGAGATATATATATGTGGTAAAGCCG
*
67794343 AATGGCTAGTGTGAAATA
66 AATGGCTAATGTGAAATA
* *
67794361 TGTATAAGATA
1 TATATGAGATA
67794372 TGTATATGTG
Statistics
Matches: 84, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
83 84 1.00
ACGTcount: A:0.38, C:0.07, G:0.25, T:0.30
Consensus pattern (83 bp):
TATATGAGATAAAGACGAATGGCTAACATGAAATATGTATGAGATATATATATGTGGTAAAGCCG
AATGGCTAATGTGAAATA
Found at i:67794327 original size:48 final size:48
Alignment explanation
Indices: 67794278--67795234 Score: 1473
Period size: 48 Copynumber: 19.9 Consensus size: 48
67794268 ATGTGAAATA
* * ** *
67794278 TATATGAGATAAAGCCGAATGGCTAACATGAAATATGTATGAGATATA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* * * *
67794326 TATGTGTGGTAAGGCCGAATGGCTAGTGTGAAATATGTATAAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
*
67794374 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* * *
67794422 TATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTTTGAGATATA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
*
67794470 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
** * *
67794518 TATATGTGGTAAAGCCGAATGGCTAACATGAAATATGTATGCGATATA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* * *
67794566 TATGTGTGGTAAGGCCGAATGGCTAGTGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* * *
67794614 TATATGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGAGATATA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
*
67794662 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
** *
67794710 TATATGTGGTAAAGCCGAATGGCTAAAATGAAATATGTATGAGATATA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
*
67794758 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* *
67794806 TATATGTGGTAAAGCCGAATGGCTAGTGAGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* *
67794854 TATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAGATATA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
*
67794902 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* * ** *
67794950 TTTATGTGGTAAATCCGAATGGCTAACATGAAATATGTATGAGATATA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* *
67794998 TTTATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
*
67795046 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* *
67795094 TATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAGATATA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* *
67795142 TATATGTGGTAAATCCGAATGGCTAATGTGAAATATGCATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* * *
67795190 TATATTTGGTAAAGCCGAATGACTAATGTGAAATATGTAGGAGAT
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAT
67795235 GTGTTTATAT
Statistics
Matches: 829, Mismatches: 80, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 829 1.00
ACGTcount: A:0.36, C:0.07, G:0.26, T:0.31
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
Found at i:67795425 original size:37 final size:38
Alignment explanation
Indices: 67795375--67795477 Score: 174
Period size: 37 Copynumber: 2.8 Consensus size: 38
67795365 GGAAATATAT
67795375 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG-
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTGA
67795412 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTGA
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTGA
* *
67795450 T-CGGGTAAGAACCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
67795478 GGACTATTCG
Statistics
Matches: 63, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
37 62 0.98
38 1 0.02
ACGTcount: A:0.24, C:0.18, G:0.32, T:0.25
Consensus pattern (38 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTGA
Found at i:67796737 original size:40 final size:40
Alignment explanation
Indices: 67796682--67797047 Score: 525
Period size: 40 Copynumber: 9.2 Consensus size: 40
67796672 GAGAATTGAG
67796682 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
67796722 AGTGATATATCCGGGCTAAGTCCCAAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
67796762 AGTGATATACCCGGGCTAAGTCTCGAAGAGCATTCGCGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
67796802 AGAGTTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
67796842 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * **
67796882 AGTGATATACCCGGGCTAAGTCTCGAAGAGCATTCACGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
67796922 AGAGTTATATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * * *
67796962 AGAGTTATATCAGGGTTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * * * *
67797002 GGTGTTATATCCGGGCTAGGTCCCGAAGAGCAATCATGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
67797042 GGTGAT
1 AGTGAT
67797048 GTGTATTCGG
Statistics
Matches: 294, Mismatches: 32, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 294 1.00
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:67796842 original size:23 final size:23
Alignment explanation
Indices: 67796816--67796882 Score: 56
Period size: 23 Copynumber: 3.2 Consensus size: 23
67796806 TTATATCCGG
67796816 GCTAAGTCCCGAAGAGCATTCGT
1 GCTAAGTCCCGAAGAGCATTCGT
* * * *
67796839 GCT-AGT---G-ATA-TATCCGG
1 GCTAAGTCCCGAAGAGCATTCGT
67796856 GCTAAGTCCCGAAGAGCATTCGT
1 GCTAAGTCCCGAAGAGCATTCGT
67796879 GCTA
1 GCTA
67796883 GTGATATACC
Statistics
Matches: 30, Mismatches: 8, Indels: 12
0.60 0.16 0.24
Matches are distributed among these distances:
17 7 0.23
18 5 0.17
19 1 0.03
21 1 0.03
22 5 0.17
23 11 0.37
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (23 bp):
GCTAAGTCCCGAAGAGCATTCGT
Found at i:67796900 original size:120 final size:120
Alignment explanation
Indices: 67796687--67797033 Score: 586
Period size: 120 Copynumber: 2.9 Consensus size: 120
67796677 TTGAGAGTGA
*
67796687 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCAAAGAG
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGAG
*
67796752 CATTCGTGCTAGTGATATACCCGGGCTAAGTCTCGAAGAGCATTCGCGCTAGAGT
66 CATTCGTGCTAGTGATATACCCGGGCTAAGTCTCGAAGAGCATTCACGCTAGAGT
67796807 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGAG
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGAG
67796872 CATTCGTGCTAGTGATATACCCGGGCTAAGTCTCGAAGAGCATTCACGCTAGAGT
66 CATTCGTGCTAGTGATATACCCGGGCTAAGTCTCGAAGAGCATTCACGCTAGAGT
* * * * *
67796927 TATATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTAGAGTTATATCAGGGTTAAGTCCCGAAGAG
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGAG
* * * * *
67796992 CATTCGTGCTGGTGTTATATCCGGGCTAGGTCCCGAAGAGCA
66 CATTCGTGCTAGTGATATACCCGGGCTAAGTCTCGAAGAGCA
67797034 ATCATGCTGG
Statistics
Matches: 215, Mismatches: 12, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
120 215 1.00
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (120 bp):
TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGAG
CATTCGTGCTAGTGATATACCCGGGCTAAGTCTCGAAGAGCATTCACGCTAGAGT
Found at i:67800773 original size:48 final size:48
Alignment explanation
Indices: 67800712--67801581 Score: 1308
Period size: 48 Copynumber: 18.0 Consensus size: 48
67800702 CAAGATAAAT
* * * *
67800712 ATATATATGTGTGGTAAGGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* * *
67800760 ATATGTGTATGTGGTAAAGCCGAATGGCTAATATGAAATATGTTTGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
67800808 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* * **
67800856 ATATGTAGATGTGGTAAAGCTGAATGGCTAACATGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* * * * *
67800904 ATATATATGTGTTGTAAGGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
67800952 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* * *
67801000 ATATATATATATGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
**
67801048 ATATGTATATGTGGTAAAGCCGAATGGCTAACATGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
67801096 ATATATATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
67801144 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
67801192 ATATGTATATGTGGTCAAGCCGAATGGCTAATATGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
67801240 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* * **
67801288 ATATGTATATGTGGTAAATCCGTATGGCTAACATGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
67801336 ATATATATATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 --ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
67801386 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGTG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
67801434 ATATGTATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* * *
67801482 ATATATATAAATGTGGTAAATCCGAATGGCTAATGTGAAATATGCATGAG
1 ATATGTAT--ATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
67801532 ATATGTATATTTGGTAAAGCCGAATGGCTAATGTGAAATATGTAGGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
67801580 AT
1 AT
67801582 GTGTGTATAT
Statistics
Matches: 742, Mismatches: 76, Indels: 8
0.90 0.09 0.01
Matches are distributed among these distances:
48 656 0.88
50 86 0.12
ACGTcount: A:0.36, C:0.07, G:0.26, T:0.31
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
Found at i:67801777 original size:37 final size:37
Alignment explanation
Indices: 67801722--67801824 Score: 179
Period size: 37 Copynumber: 2.8 Consensus size: 37
67801712 GGAAATATAT
67801722 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
*
67801759 TCCGAGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
67801796 TTCGGGTAAGACCCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
67801825 GGACTATTCG
Statistics
Matches: 62, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 62 1.00
ACGTcount: A:0.23, C:0.19, G:0.31, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:67805446 original size:93 final size:93
Alignment explanation
Indices: 67805287--67805457 Score: 270
Period size: 93 Copynumber: 1.8 Consensus size: 93
67805277 GGATGGTTGA
* *
67805287 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGTCTGAACTCATTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGCCCGAACTCATTGAGT
67805352 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * * * *
67805380 GCATCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGCCCGAACTCATTGAGT
*
67805445 TGAGTCTGAGTTC
66 TGAGTCCGAGTTC
67805458 ACTTATGGAT
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGCCCGAACTCATTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:67805506 original size:46 final size:46
Alignment explanation
Indices: 67805291--67805508 Score: 237
Period size: 46 Copynumber: 4.7 Consensus size: 46
67805281 GGTTGAGCAT
* * *
67805291 CCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* * * * *
67805337 CTGAACTCATTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---GC
* * *
67805382 ATCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* *
67805430 CCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
*
67805476 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
67805509 GGGGCAGGTT
Statistics
Matches: 144, Mismatches: 19, Indels: 18
0.80 0.10 0.10
Matches are distributed among these distances:
42 2 0.01
43 4 0.03
45 2 0.01
46 99 0.69
47 27 0.19
48 4 0.03
50 4 0.03
51 2 0.01
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
Found at i:67819072 original size:42 final size:42
Alignment explanation
Indices: 67819020--67819101 Score: 119
Period size: 42 Copynumber: 2.0 Consensus size: 42
67819010 CAAAACTAAA
* * *
67819020 AAAAATACTTAACAAATTAATTTTTTAACATACCTAAGCTAC
1 AAAAATACTTAAAAAATTAATATTTAAACATACCTAAGCTAC
* *
67819062 AAAATTACTTAAAAAATTAATATTTAAACATATCTAAGCT
1 AAAAATACTTAAAAAATTAATATTTAAACATACCTAAGCT
67819102 TATAATCAAA
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 35 1.00
ACGTcount: A:0.50, C:0.13, G:0.02, T:0.34
Consensus pattern (42 bp):
AAAAATACTTAAAAAATTAATATTTAAACATACCTAAGCTAC
Found at i:67823962 original size:41 final size:41
Alignment explanation
Indices: 67823917--67824047 Score: 113
Period size: 41 Copynumber: 3.1 Consensus size: 41
67823907 GCATTACGTC
* *
67823917 TGCTAGGCTCGGGGCCCGATAATATTCACCAACTTAAAGCT
1 TGCTAGGCTCGGAGCCTGATAATATTCACCAACTTAAAGCT
* *** * ** * *
67823958 TGCTAGACCTTTAAGTCTGAT-ATCATTTCACCGGCATT-ATGCC
1 TGCTAG-GCTCGGAGCCTGATAAT-A-TTCACCAAC-TTAAAGCT
67824001 TGCTAGGCTCGGAGCCTGATAATATTCACCAACTTAAAGCT
1 TGCTAGGCTCGGAGCCTGATAATATTCACCAACTTAAAGCT
67824042 TGCTAG
1 TGCTAG
67824048 ACCTTTAAGT
Statistics
Matches: 64, Mismatches: 20, Indels: 12
0.67 0.21 0.12
Matches are distributed among these distances:
40 2 0.03
41 24 0.38
42 18 0.28
43 18 0.28
44 2 0.03
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.29
Consensus pattern (41 bp):
TGCTAGGCTCGGAGCCTGATAATATTCACCAACTTAAAGCT
Found at i:67823974 original size:84 final size:84
Alignment explanation
Indices: 67823869--67824103 Score: 389
Period size: 84 Copynumber: 2.8 Consensus size: 84
67823859 CATCGGCAAT
* * * * *
67823869 AAGCCTGCTAGACCTTTAAGTCCGATATTATTTCACCGGCATTACGTCTGCTAGGCTCGGGGCCC
1 AAGCTTGCTAGACCTTTAAGTCTGATATCATTTCACCGGCATTACGCCTGCTAGGCTCGGAGCCC
67823934 GATAATATTCACCAACTTA
66 GATAATATTCACCAACTTA
* *
67823953 AAGCTTGCTAGACCTTTAAGTCTGATATCATTTCACCGGCATTATGCCTGCTAGGCTCGGAGCCT
1 AAGCTTGCTAGACCTTTAAGTCTGATATCATTTCACCGGCATTACGCCTGCTAGGCTCGGAGCCC
67824018 GATAATATTCACCAACTTA
66 GATAATATTCACCAACTTA
**
67824037 AAGCTTGCTAGACCTTTAAGTCTGATATCATTTCACCGGCATTACGCCTGCTAGGCTCAAAGCCC
1 AAGCTTGCTAGACCTTTAAGTCTGATATCATTTCACCGGCATTACGCCTGCTAGGCTCGGAGCCC
67824102 GA
66 GA
67824104 AAATCATCAT
Statistics
Matches: 140, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
84 140 1.00
ACGTcount: A:0.26, C:0.27, G:0.19, T:0.29
Consensus pattern (84 bp):
AAGCTTGCTAGACCTTTAAGTCTGATATCATTTCACCGGCATTACGCCTGCTAGGCTCGGAGCCC
GATAATATTCACCAACTTA
Found at i:67824062 original size:42 final size:42
Alignment explanation
Indices: 67823934--67824063 Score: 131
Period size: 42 Copynumber: 3.1 Consensus size: 42
67823924 CTCGGGGCCC
67823934 GATAATATTCACCAACTTAAAGCTTGCTAGACCTTTAAGTCT
1 GATAATATTCACCAACTTAAAGCTTGCTAGACCTTTAAGTCT
** * * * *** *
67823976 GAT-ATCATTTCACCGGCATT-ATGCCTGCTAG-GCTCGGAGCCT
1 GATAAT-A-TTCACCAAC-TTAAAGCTTGCTAGACCTTTAAGTCT
67824018 GATAATATTCACCAACTTAAAGCTTGCTAGACCTTTAAGTCT
1 GATAATATTCACCAACTTAAAGCTTGCTAGACCTTTAAGTCT
67824060 GATA
1 GATA
67824064 TCATTTCACC
Statistics
Matches: 64, Mismatches: 18, Indels: 12
0.68 0.19 0.13
Matches are distributed among these distances:
40 2 0.03
41 18 0.28
42 24 0.38
43 18 0.28
44 2 0.03
ACGTcount: A:0.29, C:0.23, G:0.16, T:0.32
Consensus pattern (42 bp):
GATAATATTCACCAACTTAAAGCTTGCTAGACCTTTAAGTCT
Found at i:67827513 original size:27 final size:27
Alignment explanation
Indices: 67827483--67827660 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
67827473 ATATTGAGTC
* * * *
67827483 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
67827510 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
67827537 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
67827565 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
67827592 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
67827619 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
67827646 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
67827661 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:67827622 original size:82 final size:81
Alignment explanation
Indices: 67827504--67827659 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
67827494 TGCTATATAA
* *
67827504 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
67827569 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
67827586 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
67827650 CACTTAGTGC
65 CACTTAGTGC
67827660 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:67834723 original size:27 final size:27
Alignment explanation
Indices: 67834693--67834869 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
67834683 ATATTGAGTC
* * * *
67834693 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
67834720 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
67834747 CGCA-ACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
67834774 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
67834801 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
67834828 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
67834855 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
67834870 GTACAATTTA
Statistics
Matches: 128, Mismatches: 18, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
26 19 0.15
27 91 0.71
28 18 0.14
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:67834831 original size:81 final size:81
Alignment explanation
Indices: 67834714--67834868 Score: 224
Period size: 81 Copynumber: 1.9 Consensus size: 81
67834704 TGCTATATAA
* *
67834714 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCA-ACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
67834778 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
67834795 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
67834859 CACTTAGTGC
65 CACTTAGTGC
67834869 TGTACAATTT
Statistics
Matches: 66, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
80 1 0.02
81 45 0.68
82 20 0.30
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:67837017 original size:119 final size:119
Alignment explanation
Indices: 67836799--67837019 Score: 297
Period size: 119 Copynumber: 1.9 Consensus size: 119
67836789 ATTCGGATTG
* * * *
67836799 ATAACCGGGCTAAGTCCTGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGCCTGAAGGCAT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGCCCGAAGGCAT
* *
67836864 TTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
66 TTGAGCGAGTTACTATATCCGGGCTAACTCCCGAAGGCATTTGTGCGAGTTACT
* *
67836918 ATAACCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTAAGTCCCGAAGGC
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAT-ACCGGGCTAAG-CCCGAAGGC
*
67836982 ATTTGAGCTAG-TAGCTATATCC-GGCTAAACT-CCGAAGG
64 ATTTGAGCGAGTTA-CTATATCCGGGCT-AACTCCCGAAGG
67837020 TACTTGGTTT
Statistics
Matches: 89, Mismatches: 9, Indels: 8
0.84 0.08 0.08
Matches are distributed among these distances:
118 2 0.02
119 59 0.66
120 28 0.31
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (119 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGCCCGAAGGCAT
TTGAGCGAGTTACTATATCCGGGCTAACTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:67837019 original size:39 final size:40
Alignment explanation
Indices: 67836803--67837009 Score: 287
Period size: 40 Copynumber: 5.2 Consensus size: 40
67836793 GGATTGATAA
* * *
67836803 CCGGGCTAAGTCCTGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
*
67836843 CCGGGCTAAG-CCTGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
67836882 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
67836922 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
67836962 CCGGGCTAAGTCCCGAAGGCATTTGAGCTAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
67837002 CC-GGCTAA
1 CCGGGCTAA
67837010 ACTCCGAAGG
Statistics
Matches: 155, Mismatches: 9, Indels: 7
0.91 0.05 0.04
Matches are distributed among these distances:
39 43 0.28
40 112 0.72
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:67843170 original size:353 final size:353
Alignment explanation
Indices: 67842524--67843224 Score: 1393
Period size: 353 Copynumber: 2.0 Consensus size: 353
67842514 TAAGATGGCG
67842524 CCTTACGAGGCTTTGTACGGTCGAAAATGCCATACACCATTGTTTTGGACCGAGCTCGGTGAAAG
1 CCTTACGAGGCTTTGTACGGTCGAAAATGCCATACACCATTGTTTTGGACCGAGCTCGGTGAAAG
67842589 TAAAATTTTCGGAGTTGATTTGATTAAAGATGCTGAACAGAAAGTAAAAGTAATCCGTGAAAGTC
66 TAAAATTTTCGGAGTTGATTTGATTAAAGATGCTGAACAGAAAGTAAAAGTAATCCGTGAAAGTC
*
67842654 TGAAGGCAGCCACAGATCATCAGAAATCGTATGTGGATTTGAAACGAAAAGGCATTGAATATCAG
131 TGAAGGCAGCCACAGATCATCAGAAATCGTATGTGGATTTGAAACGAAAAGACATTGAATATCAG
67842719 GTGGGAGATAAAGTGTTTCTTAAAGTTTCACCTTGGAAAAAGATACTCAGATTTGGCCGTAGGGG
196 GTGGGAGATAAAGTGTTTCTTAAAGTTTCACCTTGGAAAAAGATACTCAGATTTGGCCGTAGGGG
67842784 CAAGTTGAGTCCGAGATTCATTGGGCCGTACGAAATCTCCGAACGAGTTGGTCCAGTTGCGTATA
261 CAAGTTGAGTCCGAGATTCATTGGGCCGTACGAAATCTCCGAACGAGTTGGTCCAGTTGCGTATA
67842849 GATTGATTTTGCCCCCTGAACTTTGCCC
326 GATTGATTTTGCCCCCTGAACTTTGCCC
67842877 CCTTACGAGGCTTTGTACGGTCGAAAATGCCATACACCATTGTTTTGGACCGAGCTCGGTGAAAG
1 CCTTACGAGGCTTTGTACGGTCGAAAATGCCATACACCATTGTTTTGGACCGAGCTCGGTGAAAG
67842942 TAAAATTTTCGGAGTTGATTTGATTAAAGATGCTGAACAGAAAGTAAAAGTAATCCGTGAAAGTC
66 TAAAATTTTCGGAGTTGATTTGATTAAAGATGCTGAACAGAAAGTAAAAGTAATCCGTGAAAGTC
67843007 TGAAGGCAGCCACAGATCATCAGAAATCGTATGTGGATTTGAAACGAAAAGACATTGAATATCAG
131 TGAAGGCAGCCACAGATCATCAGAAATCGTATGTGGATTTGAAACGAAAAGACATTGAATATCAG
67843072 GTGGGAGATAAAGTGTTTCTTAAAGTTTCACCTTGGAAAAAGATACTCAGATTTGGCCGTAGGGG
196 GTGGGAGATAAAGTGTTTCTTAAAGTTTCACCTTGGAAAAAGATACTCAGATTTGGCCGTAGGGG
67843137 CAAGTTGAGTCCGAGATTCATTGGGCCGTACGAAATCTCCGAACGAGTTGGTCCAGTTGCGTATA
261 CAAGTTGAGTCCGAGATTCATTGGGCCGTACGAAATCTCCGAACGAGTTGGTCCAGTTGCGTATA
67843202 GATTGATTTTGCCCCCTGAACTT
326 GATTGATTTTGCCCCCTGAACTT
67843225 GAAAAGATTC
Statistics
Matches: 347, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
353 347 1.00
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.27
Consensus pattern (353 bp):
CCTTACGAGGCTTTGTACGGTCGAAAATGCCATACACCATTGTTTTGGACCGAGCTCGGTGAAAG
TAAAATTTTCGGAGTTGATTTGATTAAAGATGCTGAACAGAAAGTAAAAGTAATCCGTGAAAGTC
TGAAGGCAGCCACAGATCATCAGAAATCGTATGTGGATTTGAAACGAAAAGACATTGAATATCAG
GTGGGAGATAAAGTGTTTCTTAAAGTTTCACCTTGGAAAAAGATACTCAGATTTGGCCGTAGGGG
CAAGTTGAGTCCGAGATTCATTGGGCCGTACGAAATCTCCGAACGAGTTGGTCCAGTTGCGTATA
GATTGATTTTGCCCCCTGAACTTTGCCC
Found at i:67845260 original size:40 final size:40
Alignment explanation
Indices: 67845059--67845246 Score: 254
Period size: 40 Copynumber: 4.7 Consensus size: 40
67845049 ATTCGGATTG
* * * *
67845059 ATAACCGCGCTAAGTCCCGAAGGTATTTGTGCTAGTGACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
67845099 A-ATTCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACT
1 ATA-ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
** **
67845138 ATATTCGGGCTAAGTTTCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
67845178 ATAACTGGGCTAAGTCCTGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
67845218 ATAACCGGGCTAAGTCCCGAAGGCATTTG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTG
67845247 AGCTAGTAGC
Statistics
Matches: 129, Mismatches: 16, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
39 34 0.26
40 95 0.74
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.28
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:67845260 original size:80 final size:80
Alignment explanation
Indices: 67845059--67845269 Score: 254
Period size: 80 Copynumber: 2.7 Consensus size: 80
67845049 ATTCGGATTG
* * *
67845059 ATAACCGCGCTAAGTCCCGAAGGTATTTGTGCTAGT-GACTA-ATTCCGGGCTAAGCCCGAAGGC
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTAG-CTATATACCGGGCTAAGCCCGAAGGC
67845122 ATTTGTGCGAGTTACT
65 ATTTGTGCGAGTTACT
** ** * * *
67845138 ATATTCGGGCTAAGTTTCGAAGGCATTTGTGCGAGTTA-CTATA-ACTGGGCTAAGTCCTGAAGG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TAGCTATATACCGGGCTAAG-CCCGAAGG
67845201 CATTTGTGCGAGTTACT
64 CATTTGTGCGAGTTACT
*
67845218 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTAGCTATAT-CC-GGCTAA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTAGCTATATACCGGGCTAA
67845270 ACTTCGAAGG
Statistics
Matches: 109, Mismatches: 17, Indels: 12
0.79 0.12 0.09
Matches are distributed among these distances:
79 48 0.44
80 61 0.56
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.28
Consensus pattern (80 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTAGCTATATACCGGGCTAAGCCCGAAGGCA
TTTGTGCGAGTTACT
Found at i:67850125 original size:41 final size:41
Alignment explanation
Indices: 67850080--67850210 Score: 122
Period size: 41 Copynumber: 3.1 Consensus size: 41
67850070 GCATTACGCC
67850080 TGCTAGGCTCGGAGCCCGATAATATTCACCAGCTTAAAGCT
1 TGCTAGGCTCGGAGCCCGATAATATTCACCAGCTTAAAGCT
* *** * * * * *
67850121 TGCTAGACCTTTAAGTCTGAT-ATCATTTCACCGGCATT-ATGCC
1 TGCTAG-GCTCGGAGCCCGATAAT-A-TTCACCAGC-TTAAAGCT
*
67850164 TGCTAGGCTCGGAACCCGATAATATTCACCAGCTTAAAGCT
1 TGCTAGGCTCGGAGCCCGATAATATTCACCAGCTTAAAGCT
67850205 TGCTAG
1 TGCTAG
67850211 ACCTTTAACT
Statistics
Matches: 65, Mismatches: 19, Indels: 12
0.68 0.20 0.12
Matches are distributed among these distances:
40 2 0.03
41 25 0.38
42 17 0.26
43 19 0.29
44 2 0.03
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (41 bp):
TGCTAGGCTCGGAGCCCGATAATATTCACCAGCTTAAAGCT
Found at i:67850159 original size:84 final size:84
Alignment explanation
Indices: 67850064--67850266 Score: 352
Period size: 84 Copynumber: 2.4 Consensus size: 84
67850054 CCTGATTTCA
67850064 TCACCGGCATTACGCCTGCTAGGCTCGGAGCCCGATAATATTCACCAGCTTAAAGCTTGCTAGAC
1 TCACCGGCATTACGCCTGCTAGGCTCGGAGCCCGATAATATTCACCAGCTTAAAGCTTGCTAGAC
* *
67850129 CTTTAAGTCTGATATCATT
66 CTTTAACTCCGATATCATT
* *
67850148 TCACCGGCATTATGCCTGCTAGGCTCGGAACCCGATAATATTCACCAGCTTAAAGCTTGCTAGAC
1 TCACCGGCATTACGCCTGCTAGGCTCGGAGCCCGATAATATTCACCAGCTTAAAGCTTGCTAGAC
67850213 CTTTAACTCCGATATCATT
66 CTTTAACTCCGATATCATT
**
67850232 TCACCGGCATTACGCCTGCTAGGCTCAAAGCCCGA
1 TCACCGGCATTACGCCTGCTAGGCTCGGAGCCCGA
67850267 AATTCATAAC
Statistics
Matches: 111, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
84 111 1.00
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.27
Consensus pattern (84 bp):
TCACCGGCATTACGCCTGCTAGGCTCGGAGCCCGATAATATTCACCAGCTTAAAGCTTGCTAGAC
CTTTAACTCCGATATCATT
Found at i:67850252 original size:43 final size:43
Alignment explanation
Indices: 67850116--67850253 Score: 124
Period size: 43 Copynumber: 3.3 Consensus size: 43
67850106 CACCAGCTTA
* * *
67850116 AAGCTTGCTAGACCTTTAAGTCTGATATCATTTCACCGGCATT
1 AAGCCTGCTAGACCTTTAACTCCGATATCATTTCACCGGCATT
* * ** *
67850159 ATGCCTGCTAG-GCTCGGAAC-CCGATA--ATATTCACCAGC-TT
1 AAGCCTGCTAGACCT-TTAACTCCGATATCAT-TTCACCGGCATT
*
67850199 AAAGCTTGCTAGACCTTTAACTCCGATATCATTTCACCGGCATT
1 -AAGCCTGCTAGACCTTTAACTCCGATATCATTTCACCGGCATT
*
67850243 ACGCCTGCTAG
1 AAGCCTGCTAG
67850254 GCTCAAAGCC
Statistics
Matches: 71, Mismatches: 16, Indels: 16
0.69 0.16 0.16
Matches are distributed among these distances:
40 4 0.06
41 20 0.28
42 15 0.21
43 28 0.39
44 4 0.06
ACGTcount: A:0.25, C:0.28, G:0.17, T:0.30
Consensus pattern (43 bp):
AAGCCTGCTAGACCTTTAACTCCGATATCATTTCACCGGCATT
Found at i:67856301 original size:131 final size:131
Alignment explanation
Indices: 67856147--67856404 Score: 498
Period size: 131 Copynumber: 2.0 Consensus size: 131
67856137 AGTGCGGAAT
67856147 TTGACATACAAGTCCACATTTTTTTTAAACCATGCATTATTTGACCACTATAATTTAACCTATCA
1 TTGACATACAAGTCCACATTTTTTTTAAACCATGCATTATTTGACCACTATAATTTAACCTATCA
67856212 CATTTTCAAAGTTTCACACATAAGTCCTTTTTAATAATTTCACATCCAAATGACAAAATTAAGAA
66 CATTTTCAAAGTTTCACACATAAGTCCTTTTTAATAATTTCACATCCAAATGACAAAATTAAGAA
67856277 A
131 A
* *
67856278 TTGACATGCAAGTGCACATTTTTTTTAAACCATGCATTATTTGACCACTATAATTTAACCTATCA
1 TTGACATACAAGTCCACATTTTTTTTAAACCATGCATTATTTGACCACTATAATTTAACCTATCA
67856343 CATTTTCAAAGTTTCACACATAAGTCCTTTTTAATAATTTCACATCCAAATGACAAAATTAA
66 CATTTTCAAAGTTTCACACATAAGTCCTTTTTAATAATTTCACATCCAAATGACAAAATTAA
67856405 TACATCATAC
Statistics
Matches: 125, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
131 125 1.00
ACGTcount: A:0.37, C:0.20, G:0.07, T:0.36
Consensus pattern (131 bp):
TTGACATACAAGTCCACATTTTTTTTAAACCATGCATTATTTGACCACTATAATTTAACCTATCA
CATTTTCAAAGTTTCACACATAAGTCCTTTTTAATAATTTCACATCCAAATGACAAAATTAAGAA
A
Found at i:67868140 original size:18 final size:19
Alignment explanation
Indices: 67868097--67868146 Score: 50
Period size: 18 Copynumber: 2.7 Consensus size: 19
67868087 TAGCAGTGGT
*
67868097 AGTAGTCAATGCAGTAACC
1 AGTAATCAATGCAGTAACC
* *
67868116 A-TGATCAATGCAGT-AGC
1 AGTAATCAATGCAGTAACC
*
67868133 AGTAATCAGTGCAG
1 AGTAATCAATGCAG
67868147 AATGCAAATA
Statistics
Matches: 25, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
17 3 0.12
18 21 0.84
19 1 0.04
ACGTcount: A:0.36, C:0.18, G:0.24, T:0.22
Consensus pattern (19 bp):
AGTAATCAATGCAGTAACC
Found at i:67868571 original size:27 final size:27
Alignment explanation
Indices: 67868541--67868713 Score: 160
Period size: 27 Copynumber: 6.6 Consensus size: 27
67868531 TATTTCGGTT
* **
67868541 ATTTTATCACATAAAGGCAAAATTGTC
1 ATTTTATCACATAAGGGCAAAATCATC
* *
67868568 ATTTTATCACATTAGGGAAAAATCATC
1 ATTTTATCACATAAGGGCAAAATCATC
* *
67868595 ATTTTATCATATAAGGGAAAAATCATC
1 ATTTTATCACATAAGGGCAAAATCATC
* *
67868622 ATTTTATCACGTTAGGGC--AA--A--
1 ATTTTATCACATAAGGGCAAAATCATC
* * * **
67868643 ATTGTATCACGTGAGGGCAAAATTGTC
1 ATTTTATCACATAAGGGCAAAATCATC
*
67868670 ATTTTATCACATGAGGGCAAAATCATC
1 ATTTTATCACATAAGGGCAAAATCATC
*
67868697 ATTTTATCACATGAGGG
1 ATTTTATCACATAAGGG
67868714 TTCAAGTATG
Statistics
Matches: 122, Mismatches: 18, Indels: 12
0.80 0.12 0.08
Matches are distributed among these distances:
21 16 0.13
23 3 0.02
25 2 0.02
27 101 0.83
ACGTcount: A:0.37, C:0.14, G:0.16, T:0.32
Consensus pattern (27 bp):
ATTTTATCACATAAGGGCAAAATCATC
Found at i:67868652 original size:21 final size:21
Alignment explanation
Indices: 67868626--67868668 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
67868616 ATCATCATTT
*
67868626 TATCACGTTAGGGCAAAATTG
1 TATCACGTGAGGGCAAAATTG
67868647 TATCACGTGAGGGCAAAATTG
1 TATCACGTGAGGGCAAAATTG
67868668 T
1 T
67868669 CATTTTATCA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.28
Consensus pattern (21 bp):
TATCACGTGAGGGCAAAATTG
Found at i:67870651 original size:5 final size:5
Alignment explanation
Indices: 67870641--67870674 Score: 59
Period size: 5 Copynumber: 6.6 Consensus size: 5
67870631 TATAATGTGT
67870641 AATAA AATAA AATAA AATAA AATAA ACATAA AAT
1 AATAA AATAA AATAA AATAA AATAA A-ATAA AAT
67870675 GCCCATGCAT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 23 0.82
6 5 0.18
ACGTcount: A:0.76, C:0.03, G:0.00, T:0.21
Consensus pattern (5 bp):
AATAA
Found at i:67871602 original size:41 final size:43
Alignment explanation
Indices: 67871500--67871614 Score: 119
Period size: 44 Copynumber: 2.7 Consensus size: 43
67871490 AGATATCGTG
* * *
67871500 TAAGACCGTGTCTGGGACATAGGCCTCGATTTGAGATTTACGTC
1 TAAGACCATGTCTGGGACATAGGCATCGATTT-AGATTTACATC
*
67871544 TAAGACCATGTCTGGGACATCGGCATCGTATTT-GATTT-CAT-
1 TAAGACCATGTCTGGGACATAGGCATCG-ATTTAGATTTACATC
* * * *
67871585 TAAGACCCTGTCAGGGACAGAGGTATCGAT
1 TAAGACCATGTCTGGGACATAGGCATCGAT
67871615 ACTGAATTAC
Statistics
Matches: 61, Mismatches: 9, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
40 2 0.03
41 23 0.38
42 2 0.03
43 5 0.08
44 25 0.41
45 4 0.07
ACGTcount: A:0.25, C:0.20, G:0.26, T:0.29
Consensus pattern (43 bp):
TAAGACCATGTCTGGGACATAGGCATCGATTTAGATTTACATC
Found at i:67879873 original size:27 final size:27
Alignment explanation
Indices: 67879843--67880198 Score: 471
Period size: 27 Copynumber: 13.2 Consensus size: 27
67879833 AACACCCTAG
** *
67879843 GGGTAAAATGGTAATTTTATAAATCGA
1 GGGTAAAACAGTAATTCTATAAATCGA
* *
67879870 GGGTAAAACGGTAATTCTACAAATCGA
1 GGGTAAAACAGTAATTCTATAAATCGA
* *
67879897 GGGTAAAATAGTAATTCTGTAAATCGA
1 GGGTAAAACAGTAATTCTATAAATCGA
**
67879924 GGGTAAAATGGTAATTCTATAAATCGA
1 GGGTAAAACAGTAATTCTATAAATCGA
* *
67879951 GGGTAAAATAGTAATTTTATAAATCGA
1 GGGTAAAACAGTAATTCTATAAATCGA
** * *
67879978 GGGTAAAATGGTAATTTTGTAAATCGA
1 GGGTAAAACAGTAATTCTATAAATCGA
*
67880005 GGGTAAAACGGTAATTCTATAAATCGA
1 GGGTAAAACAGTAATTCTATAAATCGA
* * *
67880032 GGGTAAAACAATAATTTTATAAATCTA
1 GGGTAAAACAGTAATTCTATAAATCGA
* * *
67880059 GGGTAAAATAGTAATTCTGTAAATTGA
1 GGGTAAAACAGTAATTCTATAAATCGA
67880086 GGGTAAAACAGTAATTCTATAAATCGA
1 GGGTAAAACAGTAATTCTATAAATCGA
*
67880113 GGGTAAAACAATAATTCTATAAATCGA
1 GGGTAAAACAGTAATTCTATAAATCGA
*
67880140 GGGTAAAACAGTAATTCTGTAAATCGA
1 GGGTAAAACAGTAATTCTATAAATCGA
*
67880167 GGGTAAAAC-GATAATTCTGTAAATCGA
1 GGGTAAAACAG-TAATTCTATAAATCGA
67880194 GGGTA
1 GGGTA
67880199 TTTTGGTAAT
Statistics
Matches: 296, Mismatches: 32, Indels: 2
0.90 0.10 0.01
Matches are distributed among these distances:
26 1 0.00
27 295 1.00
ACGTcount: A:0.42, C:0.08, G:0.21, T:0.29
Consensus pattern (27 bp):
GGGTAAAACAGTAATTCTATAAATCGA
Found at i:67880209 original size:81 final size:81
Alignment explanation
Indices: 67879843--67880198 Score: 550
Period size: 81 Copynumber: 4.4 Consensus size: 81
67879833 AACACCCTAG
* * * *
67879843 GGGTAAAATGGTAATTTTATAAATCGAGGGTAAAACGGTAATTCTACAAATCGAGGGTAAAATAG
1 GGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAATAG
67879908 TAATTCTGTAAATCGA
66 TAATTCTGTAAATCGA
* * * *
67879924 GGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATAGTAATTTTATAAATCGAGGGTAAAATGG
1 GGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAATAG
*
67879989 TAATTTTGTAAATCGA
66 TAATTCTGTAAATCGA
* * *
67880005 GGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACAATAATTTTATAAATCTAGGGTAAAATAG
1 GGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAATAG
*
67880070 TAATTCTGTAAATTGA
66 TAATTCTGTAAATCGA
* * *
67880086 GGGTAAAACAGTAATTCTATAAATCGAGGGTAAAACAATAATTCTATAAATCGAGGGTAAAACAG
1 GGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAATAG
67880151 TAATTCTGTAAATCGA
66 TAATTCTGTAAATCGA
* *
67880167 GGGTAAAACGATAATTCTGTAAATCGAGGGTA
1 GGGTAAAACGGTAATTCTATAAATCGAGGGTA
67880199 TTTTGGTAAT
Statistics
Matches: 253, Mismatches: 22, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
81 253 1.00
ACGTcount: A:0.42, C:0.08, G:0.21, T:0.29
Consensus pattern (81 bp):
GGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAATAG
TAATTCTGTAAATCGA
Found at i:67886281 original size:18 final size:18
Alignment explanation
Indices: 67886260--67886296 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
67886250 GCGAGATGAC
67886260 TATAAACCTACTGATGGG
1 TATAAACCTACTGATGGG
67886278 TATAAACCTACTGATGGG
1 TATAAACCTACTGATGGG
67886296 T
1 T
67886297 CAGTAAGTGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.32, C:0.16, G:0.22, T:0.30
Consensus pattern (18 bp):
TATAAACCTACTGATGGG
Found at i:67891560 original size:39 final size:39
Alignment explanation
Indices: 67891498--67891676 Score: 261
Period size: 39 Copynumber: 4.5 Consensus size: 39
67891488 TAATGGAGAA
*
67891498 TTATATCCGGGCTGAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
*
67891537 TTATATCCGGGCTAAGTCTCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* *
67891576 TTATATCTGGGCTAAGTCCCGAAGGCATTCGTGCTAGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* * *
67891615 TTATATCCGGGCTAAAGTCCCGCAGGC-TTTGTGCTGGTA
1 TTATATCCGGGCT-AAGTCCCGAAGGCATTCGTGCTGGTG
67891654 TTATATCCGGGCTTAAAGTCCCG
1 TTATATCCGGGC-T-AAGTCCCG
67891677 CATGCTTTGT
Statistics
Matches: 128, Mismatches: 10, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
39 106 0.83
40 22 0.17
ACGTcount: A:0.18, C:0.22, G:0.29, T:0.30
Consensus pattern (39 bp):
TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
Found at i:67896499 original size:67 final size:65
Alignment explanation
Indices: 67896372--67896567 Score: 193
Period size: 67 Copynumber: 3.0 Consensus size: 65
67896362 TCGCTTGTAC
* * * * * *
67896372 ACATGGTGAACACTTAGTACCACCCATGTGACCTAGC--CAGT-TTATCTCGTAGCTCTCTTGTC
1 ACATGGTGTACACATAGAACCACCCATGCGACCTAGCTACA-TCATATCTTGTAGCTCTCTTGTC
67896434 T
65 T
* * * *
67896435 ACATGGTGTCCTTCACTTGGAACCACGCATGCGACCTAGCTACAT-ATATCTTGTAGCTCTCTTG
1 ACATGGTG---TACACATAGAACCACCCATGCGACCTAGCTACATCATATCTTGTAGCTCTCTTG
67896499 TCT
63 TCT
* *
67896502 ACATGGTGTACACATAGTATCACCCATGCGACCTAGCTACATCATAATGTCTTGTAGCTCTCTTG
1 ACATGGTGTACACATAGAACCACCCATGCGACCTAGCTACATCAT-A--TCTTGTAGCTCTCTTG
67896567 T
63 T
67896568 ACACATGATG
Statistics
Matches: 110, Mismatches: 14, Indels: 13
0.80 0.10 0.09
Matches are distributed among these distances:
63 8 0.07
64 28 0.25
65 2 0.02
66 24 0.22
67 29 0.26
68 19 0.17
ACGTcount: A:0.23, C:0.28, G:0.17, T:0.32
Consensus pattern (65 bp):
ACATGGTGTACACATAGAACCACCCATGCGACCTAGCTACATCATATCTTGTAGCTCTCTTGTCT
Found at i:67897303 original size:30 final size:30
Alignment explanation
Indices: 67897269--67897329 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
67897259 TCCTTAACTC
67897269 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
67897299 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
67897329 A
1 A
67897330 GGCTCGAGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:67907577 original size:17 final size:16
Alignment explanation
Indices: 67907551--67907593 Score: 59
Period size: 17 Copynumber: 2.6 Consensus size: 16
67907541 TAGGTGTGGA
*
67907551 AAGAAAGAAGAAAATG
1 AAGAATGAAGAAAATG
67907567 AGAGAATGAAGAAAATG
1 A-AGAATGAAGAAAATG
67907584 AATGAATGAA
1 AA-GAATGAA
67907594 TGATGAATGA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
16 2 0.08
17 22 0.92
ACGTcount: A:0.63, C:0.00, G:0.26, T:0.12
Consensus pattern (16 bp):
AAGAATGAAGAAAATG
Found at i:67910707 original size:30 final size:30
Alignment explanation
Indices: 67910671--67910731 Score: 113
Period size: 30 Copynumber: 2.0 Consensus size: 30
67910661 TCCAACAAGA
67910671 TAGTAAACATGTGATTTTGTGTGTTGCATG
1 TAGTAAACATGTGATTTTGTGTGTTGCATG
*
67910701 TAGTAAACATTTGATTTTGTGTGTTGCATG
1 TAGTAAACATGTGATTTTGTGTGTTGCATG
67910731 T
1 T
67910732 GTGGACTGAT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.23, C:0.07, G:0.25, T:0.46
Consensus pattern (30 bp):
TAGTAAACATGTGATTTTGTGTGTTGCATG
Found at i:67914617 original size:110 final size:110
Alignment explanation
Indices: 67914419--67914636 Score: 409
Period size: 110 Copynumber: 2.0 Consensus size: 110
67914409 AAAACAACAT
67914419 ATATACATTCATGATAAAACCCTATACTTTTAACAGTTTTACAAATTAGTCCCCGGGCTAGCTAG
1 ATATACATTCATGATAAAACCCTATACTTTTAACAGTTTTACAAATTAGTCCCCGGGCTAGCTAG
67914484 ATTAAGCTACAACAACTTCAGAAACATAGAAATCATTAAAAACCA
66 ATTAAGCTACAACAACTTCAGAAACATAGAAATCATTAAAAACCA
* *
67914529 ATATACATTCATGATAAAGCCCTATACTTTTAGCAGTTTTACAAATTAGTCCCCGGGCTAGCTAG
1 ATATACATTCATGATAAAACCCTATACTTTTAACAGTTTTACAAATTAGTCCCCGGGCTAGCTAG
*
67914594 ATTAAGCTACAACAACTTTAGAAACATAGAAATCATTAAAAAC
66 ATTAAGCTACAACAACTTCAGAAACATAGAAATCATTAAAAAC
67914637 AAGATGAAAA
Statistics
Matches: 105, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
110 105 1.00
ACGTcount: A:0.41, C:0.20, G:0.11, T:0.28
Consensus pattern (110 bp):
ATATACATTCATGATAAAACCCTATACTTTTAACAGTTTTACAAATTAGTCCCCGGGCTAGCTAG
ATTAAGCTACAACAACTTCAGAAACATAGAAATCATTAAAAACCA
Found at i:67918274 original size:40 final size:40
Alignment explanation
Indices: 67918207--67918478 Score: 436
Period size: 40 Copynumber: 6.8 Consensus size: 40
67918197 ATAACCACAA
* * * * *
67918207 GCACAATTGCCTTTGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* * *
67918247 GCACGAATGCCTTCGGGTCTTAGCCCGGATAAATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
67918287 GCACAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
67918327 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATGTCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATA--TCAACTC
67918369 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
67918409 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
67918449 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
67918479 GTATTCAAAT
Statistics
Matches: 216, Mismatches: 14, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
40 176 0.81
42 40 0.19
ACGTcount: A:0.24, C:0.29, G:0.22, T:0.26
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
Found at i:67918397 original size:122 final size:122
Alignment explanation
Indices: 67918207--67918486 Score: 449
Period size: 122 Copynumber: 2.3 Consensus size: 122
67918197 ATAACCACAA
* * * * *
67918207 GCACAATTGCCTTTGGGTCTTAACCCGGGTATA-G-CAACTCGCACGAATGCCTTCGGGTCTTAG
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATGTCAACTCGCACAAATGCCTTCGGGTCTTAG
* *
67918270 CCCGGATAAATCAACTTGCACAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTC
66 CCCGGATAAATCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
67918327 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATGTCAACTCGCACAAATGCCTTCGGGTCTTAG
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATGTCAACTCGCACAAATGCCTTCGGGTCTTAG
* *
67918392 CCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
66 CCCGGATAAATCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
67918449 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAT-TCAA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATGTCAA
67918487 ATGCTCATGC
Statistics
Matches: 148, Mismatches: 10, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
120 29 0.20
121 5 0.03
122 114 0.77
ACGTcount: A:0.24, C:0.28, G:0.21, T:0.26
Consensus pattern (122 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATGTCAACTCGCACAAATGCCTTCGGGTCTTAG
CCCGGATAAATCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
Found at i:67926646 original size:40 final size:40
Alignment explanation
Indices: 67926594--67926864 Score: 445
Period size: 40 Copynumber: 6.8 Consensus size: 40
67926584 ATAACCACAA
* * * *
67926594 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
67926634 GCACGAATGCCTTCGGGTCTTAGCCCGGATA-ATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
67926673 GCACAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
67926713 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATGTCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATA--TCAACTC
67926755 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
67926795 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
67926835 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
67926865 GTATTCAAAT
Statistics
Matches: 217, Mismatches: 11, Indels: 6
0.93 0.05 0.03
Matches are distributed among these distances:
39 35 0.16
40 142 0.65
42 40 0.18
ACGTcount: A:0.23, C:0.29, G:0.22, T:0.26
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
Found at i:67926785 original size:82 final size:80
Alignment explanation
Indices: 67926594--67926864 Score: 454
Period size: 82 Copynumber: 3.4 Consensus size: 80
67926584 ATAACCACAA
* * * * *
67926594 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCC
67926659 CGGATA-ATCAACTT
66 CGGATATATCAACTT
*
67926673 GCACAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCC
*
67926738 CGGATATATGTCAACTC
66 CGGATATA--TCAACTT
67926755 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCC
67926820 CGGATATATCAACTT
66 CGGATATATCAACTT
67926835 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
67926865 GTATTCAAAT
Statistics
Matches: 182, Mismatches: 7, Indels: 5
0.94 0.04 0.03
Matches are distributed among these distances:
79 67 0.37
80 37 0.20
82 78 0.43
ACGTcount: A:0.23, C:0.29, G:0.22, T:0.26
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCC
CGGATATATCAACTT
Found at i:67926824 original size:122 final size:121
Alignment explanation
Indices: 67926594--67926872 Score: 456
Period size: 122 Copynumber: 2.3 Consensus size: 121
67926584 ATAACCACAA
* * * *
67926594 GCACAATTGCCTTCGGGTCTTAACCCGGGTATA-G-CAACTCGCACGAATGCCTTCGGGTCTTAG
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATGTCAACTCGCACAAATGCCTTCGGGTCTTAG
* *
67926657 CCCGGATAATCAACTTGCACAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTC
66 CCCGGATAATCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
67926713 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATGTCAACTCGCACAAATGCCTTCGGGTCTTAG
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATGTCAACTCGCACAAATGCCTTCGGGTCTTAG
*
67926778 CCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
66 CCCGGATA-ATCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
67926835 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAT-TCAA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATGTCAA
67926873 ATGCTCATGC
Statistics
Matches: 149, Mismatches: 8, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
119 30 0.20
120 1 0.01
121 40 0.27
122 78 0.52
ACGTcount: A:0.24, C:0.29, G:0.22, T:0.26
Consensus pattern (121 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATGTCAACTCGCACAAATGCCTTCGGGTCTTAG
CCCGGATAATCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
Found at i:67934458 original size:19 final size:19
Alignment explanation
Indices: 67934434--67934472 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
67934424 AAGCTAAAGT
67934434 AAGCCAACACATTTGGCCA
1 AAGCCAACACATTTGGCCA
67934453 AAGCCAACACATTTGGCCA
1 AAGCCAACACATTTGGCCA
67934472 A
1 A
67934473 TTAACAATGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.38, C:0.31, G:0.15, T:0.15
Consensus pattern (19 bp):
AAGCCAACACATTTGGCCA
Found at i:67936058 original size:27 final size:27
Alignment explanation
Indices: 67936028--67936205 Score: 115
Period size: 27 Copynumber: 6.6 Consensus size: 27
67936018 ATATTGAGCC
* * *
67936028 CGCACACTCAGTGCTATACAATCAACT
1 CGCACACTTAGTGCTACACAATCAAAT
* **
67936055 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACACAATCAAAT
* * * *
67936082 CGCACACTTAGTGCTACATAGTTAGACT
1 CGCACACTTAGTGCTACACAATCA-AAT
** *** *
67936110 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACACAATCAAAT
* * **
67936137 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CACAATCAAAT
* * * *
67936164 CGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTACACAATCAAAT
67936191 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
67936206 GTACAATTTA
Statistics
Matches: 123, Mismatches: 25, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
27 100 0.81
28 23 0.19
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACACAATCAAAT
Found at i:67936121 original size:55 final size:55
Alignment explanation
Indices: 67936028--67936205 Score: 204
Period size: 54 Copynumber: 3.3 Consensus size: 55
67936018 ATATTGAGCC
* * *
67936028 CGCACACTCAGTGCTATACA-A-TCAACTCGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTAT-CATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
* * *
67936082 CGCACACTTAGTGCTA-CATAGTT-AGACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTATCATA-TTCA-ACTCGCACACTTAGTGCCACATAGTCAAAT
** * *
67936137 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
67936191 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
67936206 GTACAATTTA
Statistics
Matches: 104, Mismatches: 13, Indels: 13
0.80 0.10 0.10
Matches are distributed among these distances:
52 2 0.02
53 1 0.01
54 56 0.54
55 45 0.43
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (55 bp):
CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
Found at i:67936167 original size:82 final size:81
Alignment explanation
Indices: 67936049--67936204 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
67936039 TGCTATACAA
* * *
67936049 TCAACTCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCTACATAGTTAGACTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAG-TAGAATCGCA
67936114 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * ** *
67936131 TCAATTCGCACACTTAGTG-CATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCGCA
67936195 CACTTAGTGC
65 CACTTAGTGC
67936205 TGTACAATTT
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 20 0.31
82 45 0.69
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCGCAC
ACTTAGTGCCGCATGG
Found at i:67954332 original size:39 final size:39
Alignment explanation
Indices: 67954277--67954406 Score: 172
Period size: 39 Copynumber: 3.3 Consensus size: 39
67954267 TGTATAGATT
*
67954277 GAAAATATATCCGGACATGAGGTCTGCAGGCTACATGCTG
1 GAAAA-ATATCCGGACATGAGGTCCGCAGGCTACATGCTG
* * *
67954317 GAAAAATATCCGGACATGAGATCCGCAGGCTATATGCTA
1 GAAAAATATCCGGACATGAGGTCCGCAGGCTACATGCTG
* * * *
67954356 GAAATAT-TCCGGACTTGAGGTCCGCAGGCTACTTACTG
1 GAAAAATATCCGGACATGAGGTCCGCAGGCTACATGCTG
67954394 GAAAAATATCCGG
1 GAAAAATATCCGG
67954407 GTTAAAGACC
Statistics
Matches: 77, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
38 31 0.40
39 41 0.53
40 5 0.06
ACGTcount: A:0.32, C:0.21, G:0.25, T:0.22
Consensus pattern (39 bp):
GAAAAATATCCGGACATGAGGTCCGCAGGCTACATGCTG
Found at i:67954420 original size:77 final size:77
Alignment explanation
Indices: 67954279--67954432 Score: 204
Period size: 77 Copynumber: 2.0 Consensus size: 77
67954269 TATAGATTGA
* * * *
67954279 AAATATATCCGGACATGAGGTCTGCAGGCTACATGCTGGAAAAATATCCGGACATGAGATCCGCA
1 AAATATATCCGGACATGAGGTCCGCAGGCTACATACTGGAAAAATATCCGGACATAAGACCCGCA
67954344 GGCTATATGCTAG
66 GGCT-TATGCTAG
* * **
67954357 AAATAT-TCCGGACTTGAGGTCCGCAGGCTACTTACTGGAAAAATATCCGG-GTTAAAGACCCGC
1 AAATATATCCGGACATGAGGTCCGCAGGCTACATACTGGAAAAATATCCGGACAT-AAGACCCGC
67954420 AGGCTTATGCTAG
65 AGGCTTATGCTAG
67954433 TAATGTATTC
Statistics
Matches: 67, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
76 9 0.13
77 52 0.78
78 6 0.09
ACGTcount: A:0.31, C:0.21, G:0.25, T:0.23
Consensus pattern (77 bp):
AAATATATCCGGACATGAGGTCCGCAGGCTACATACTGGAAAAATATCCGGACATAAGACCCGCA
GGCTTATGCTAG
Found at i:67956432 original size:47 final size:47
Alignment explanation
Indices: 67956314--67956482 Score: 176
Period size: 46 Copynumber: 3.7 Consensus size: 47
67956304 GGATGGTTGA
*
67956314 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGA-GGATGCGAAT
* *
67956362 G--TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA-GATG-TAACT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGAGGATGCGAA-T
*
67956405 AGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-
1 --GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGA-GGATGCGAAT
* *
67956454 -C-GCCGAGCTCGTTGAGTTGAGT-CGAGTTC
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTC
67956483 GCTTATGGGC
Statistics
Matches: 104, Mismatches: 8, Indels: 22
0.78 0.06 0.16
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
44 7 0.07
45 22 0.21
46 30 0.29
47 29 0.28
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (47 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGAGGATGCGAAT
Found at i:67963426 original size:30 final size:30
Alignment explanation
Indices: 67963370--67963426 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
67963360 ATCCCGAGCC
*
67963370 TAGGGGCAAAAATGTAAATATGCAAAAGTT
1 TAGGGGCAAAAATGTAAATATCCAAAAGTT
* * *
67963400 TAGGGGCAAAATTGTAATTTTCCAAAA
1 TAGGGGCAAAAATGTAAATATCCAAAA
67963427 TTTGAGTTAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.44, C:0.09, G:0.21, T:0.26
Consensus pattern (30 bp):
TAGGGGCAAAAATGTAAATATCCAAAAGTT
Found at i:67974361 original size:17 final size:17
Alignment explanation
Indices: 67974329--67974362 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
67974319 TATATACATG
*
67974329 TTTAACCATGTATTCAA
1 TTTAACCAAGTATTCAA
*
67974346 TTTAACCAAGTGTTCAA
1 TTTAACCAAGTATTCAA
67974363 CTAACTTATA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.35, C:0.18, G:0.09, T:0.38
Consensus pattern (17 bp):
TTTAACCAAGTATTCAA
Found at i:67975302 original size:25 final size:24
Alignment explanation
Indices: 67975274--67975340 Score: 82
Period size: 25 Copynumber: 2.8 Consensus size: 24
67975264 GCAAAAAAAT
67975274 GGTAAGCTCATACGAGCTAAGAACC
1 GGTAAGCTCATACGAGCTAA-AACC
*
67975299 GGTAAGCTC-TCACGAGCTAAAATC
1 GGTAAGCTCAT-ACGAGCTAAAACC
* *
67975323 GGTAAACTCATATGAGCT
1 GGTAAGCTCATACGAGCT
67975341 GTGGTGTGTC
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
24 18 0.49
25 19 0.51
ACGTcount: A:0.34, C:0.22, G:0.22, T:0.21
Consensus pattern (24 bp):
GGTAAGCTCATACGAGCTAAAACC
Found at i:67975339 original size:24 final size:24
Alignment explanation
Indices: 67975269--67975340 Score: 85
Period size: 24 Copynumber: 3.0 Consensus size: 24
67975259 CATGAGCAAA
67975269 AAAAT-GGTAAGCTCATACGAGCT
1 AAAATCGGTAAGCTCATACGAGCT
*
67975292 AAGAACCGGTAAGCTC-TCACGAGCT
1 AA-AATCGGTAAGCTCAT-ACGAGCT
* *
67975317 AAAATCGGTAAACTCATATGAGCT
1 AAAATCGGTAAGCTCATACGAGCT
67975341 GTGGTGTGTC
Statistics
Matches: 41, Mismatches: 4, Indels: 7
0.79 0.08 0.13
Matches are distributed among these distances:
23 2 0.05
24 20 0.49
25 19 0.46
ACGTcount: A:0.38, C:0.21, G:0.21, T:0.21
Consensus pattern (24 bp):
AAAATCGGTAAGCTCATACGAGCT
Found at i:67976212 original size:16 final size:18
Alignment explanation
Indices: 67976181--67976213 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
67976171 TTGTTTTATT
67976181 TATTTTATCATTAATTAC
1 TATTTTATCATTAATTAC
67976199 TATTTTA-C-TTAATTA
1 TATTTTATCATTAATTA
67976214 ACCTTTATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 1 0.07
18 7 0.47
ACGTcount: A:0.33, C:0.09, G:0.00, T:0.58
Consensus pattern (18 bp):
TATTTTATCATTAATTAC
Found at i:67984197 original size:16 final size:16
Alignment explanation
Indices: 67984176--67984212 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
67984166 CGGCAAATCC
*
67984176 CGAAATGCTAAAAAGT
1 CGAAATGCCAAAAAGT
67984192 CGAAATGCCAAAAAGT
1 CGAAATGCCAAAAAGT
*
67984208 TGAAA
1 CGAAA
67984213 GTTCGGCTAC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.51, C:0.14, G:0.19, T:0.16
Consensus pattern (16 bp):
CGAAATGCCAAAAAGT
Found at i:67984464 original size:29 final size:29
Alignment explanation
Indices: 67984422--67984510 Score: 144
Period size: 29 Copynumber: 3.1 Consensus size: 29
67984412 GAAAGCATGT
67984422 ATACGAATGTGATTTGGGCCTAATGGGCC
1 ATACGAATGTGATTTGGGCCTAATGGGCC
67984451 ATACGAATGTGATTTGGGCCTAATGGGCC
1 ATACGAATGTGATTTGGGCCTAATGGGCC
* * *
67984480 ATATGAATGAGA-TTGGGCCTAGTGGGCC
1 ATACGAATGTGATTTGGGCCTAATGGGCC
67984508 ATA
1 ATA
67984511 TGCATGTATG
Statistics
Matches: 57, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
28 18 0.32
29 39 0.68
ACGTcount: A:0.26, C:0.16, G:0.31, T:0.27
Consensus pattern (29 bp):
ATACGAATGTGATTTGGGCCTAATGGGCC
Found at i:67992549 original size:27 final size:27
Alignment explanation
Indices: 67992422--67992645 Score: 184
Period size: 27 Copynumber: 8.3 Consensus size: 27
67992412 TTAGTTTACC
* * *
67992422 AAATTACCAAAATA-CCCTCAATTAGCA
1 AAATTACCAAAATACCCCT-GATTTGTA
* * *
67992449 AAATTACCAAAATACCCTTAATTTATA
1 AAATTACCAAAATACCCCTGATTTGTA
*
67992476 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGATTTGTA
*
67992503 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGATTTGTA
* *
67992530 AAATTACCAAAATACCCCTGATTTTTG
1 AAATTACCAAAATACCCCTGATTTGTA
** * **
67992557 AAATTACTGAAATA-CCTTCGACCTGTA
1 AAATTACCAAAATACCCCT-GATTTGTA
*** * *
67992584 AAATTATTGAAATA-CTCTCGACTTGTA
1 AAATTACCAAAATACCCCT-GATTTGTA
* * *
67992611 AAATTACCAAAGTACCCTTGATTTATA
1 AAATTACCAAAATACCCCTGATTTGTA
*
67992638 GAATTACC
1 AAATTACC
67992646 GTTTTACCCT
Statistics
Matches: 163, Mismatches: 31, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
26 3 0.02
27 155 0.95
28 5 0.03
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGATTTGTA
Found at i:67992696 original size:27 final size:27
Alignment explanation
Indices: 67992674--67992725 Score: 104
Period size: 27 Copynumber: 1.9 Consensus size: 27
67992664 AAAATTATTG
67992674 AAATACCCCTGTAGGGTAGAATTACTA
1 AAATACCCCTGTAGGGTAGAATTACTA
67992701 AAATACCCCTGTAGGGTAGAATTAC
1 AAATACCCCTGTAGGGTAGAATTAC
67992726 CGAGATACCC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.37, C:0.19, G:0.19, T:0.25
Consensus pattern (27 bp):
AAATACCCCTGTAGGGTAGAATTACTA
Found at i:67992733 original size:27 final size:27
Alignment explanation
Indices: 67992674--67992754 Score: 99
Period size: 27 Copynumber: 3.0 Consensus size: 27
67992664 AAAATTATTG
*
67992674 AAATACCCCTGTAGGGTAGAATTACTA
1 AAATACCCCTGTAGGGTAGAATTACCA
*
67992701 AAATACCCCTGTAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCA
* * * * *
67992728 AGATACCCTTATGGGGTAAAATTACCA
1 AAATACCCCTGTAGGGTAGAATTACCA
67992755 TTTTGCCCCT
Statistics
Matches: 46, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 46 1.00
ACGTcount: A:0.36, C:0.20, G:0.20, T:0.25
Consensus pattern (27 bp):
AAATACCCCTGTAGGGTAGAATTACCA
Found at i:67993318 original size:22 final size:22
Alignment explanation
Indices: 67993266--67993326 Score: 70
Period size: 22 Copynumber: 2.8 Consensus size: 22
67993256 GCCAATTATT
*
67993266 CTGATTATGGCTTTGCGACAAC
1 CTGATTATGGCTTTGTGACAAC
* *
67993288 CT-ACATATGGCTTTGTGCCAAC
1 CTGA-TTATGGCTTTGTGACAAC
*
67993310 CTGATTATGGCTGTGTG
1 CTGATTATGGCTTTGTG
67993327 TCGTTATTGT
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
21 1 0.03
22 30 0.94
23 1 0.03
ACGTcount: A:0.20, C:0.21, G:0.25, T:0.34
Consensus pattern (22 bp):
CTGATTATGGCTTTGTGACAAC
Found at i:67993604 original size:6 final size:6
Alignment explanation
Indices: 67993595--67993735 Score: 74
Period size: 6 Copynumber: 22.8 Consensus size: 6
67993585 TTGCATTCAC
* * * * *
67993595 ATTCTG ATTCTA ATTCTG -TTACCTG ATACTG ATTCTG ACTCTG -TCACCTA
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG AT--TCTG
* * * *
67993645 ATACTG ATTCTG ATTCTA ATTCTA ATTCTG -TTACCTG ATACTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG
* * *
67993694 ATTCTG -TCACCTG ATTCTG ATTCTG ATTCTC ATTTTG ATTCT
1 ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCT
67993736 AGTTTTGATA
Statistics
Matches: 102, Mismatches: 21, Indels: 24
0.69 0.14 0.16
Matches are distributed among these distances:
5 5 0.05
6 82 0.80
7 11 0.11
8 4 0.04
ACGTcount: A:0.21, C:0.21, G:0.12, T:0.45
Consensus pattern (6 bp):
ATTCTG
Found at i:67993626 original size:25 final size:25
Alignment explanation
Indices: 67993598--67993661 Score: 92
Period size: 25 Copynumber: 2.6 Consensus size: 25
67993588 CATTCACATT
* * *
67993598 CTGATTCTAATTCTGTTACCTGATA
1 CTGATTCTGATTCTGTCACCTAATA
*
67993623 CTGATTCTGACTCTGTCACCTAATA
1 CTGATTCTGATTCTGTCACCTAATA
67993648 CTGATTCTGATTCT
1 CTGATTCTGATTCT
67993662 AATTCTAATT
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 34 1.00
ACGTcount: A:0.22, C:0.23, G:0.12, T:0.42
Consensus pattern (25 bp):
CTGATTCTGATTCTGTCACCTAATA
Found at i:67993658 original size:37 final size:37
Alignment explanation
Indices: 67993617--67993695 Score: 104
Period size: 37 Copynumber: 2.1 Consensus size: 37
67993607 ATTCTGTTAC
* *
67993617 CTGATACTGATTCTGACTCTGTCACCTAATACTGATT
1 CTGATACTAATTCTAACTCTGTCACCTAATACTGATT
* * * *
67993654 CTGATTCTAATTCTAATTCTGTTACCTGATACTGATT
1 CTGATACTAATTCTAACTCTGTCACCTAATACTGATT
67993691 CTGAT
1 CTGAT
67993696 TCTGTCACCT
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.24, C:0.22, G:0.13, T:0.42
Consensus pattern (37 bp):
CTGATACTAATTCTAACTCTGTCACCTAATACTGATT
Found at i:67993683 original size:25 final size:25
Alignment explanation
Indices: 67993654--67993723 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 25
67993644 AATACTGATT
* * *
67993654 CTGATTCTAATTCTAATTCTGTTAC
1 CTGATTCTGATTCTGATTCTGTCAC
*
67993679 CTGATACTGATTCTGATTCTGTCAC
1 CTGATTCTGATTCTGATTCTGTCAC
67993704 CTGATTCTGATTCTGATTCT
1 CTGATTCTGATTCTGATTCT
67993724 CATTTTGATT
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 40 1.00
ACGTcount: A:0.20, C:0.21, G:0.13, T:0.46
Consensus pattern (25 bp):
CTGATTCTGATTCTGATTCTGTCAC
Found at i:67993735 original size:62 final size:62
Alignment explanation
Indices: 67993595--67993723 Score: 222
Period size: 62 Copynumber: 2.1 Consensus size: 62
67993585 TTGCATTCAC
*
67993595 ATTCTGATTCTAATTCTGTTACCTGATACTGATTCTGACTCTGTCACCTAATACTGATTCTG
1 ATTCTAATTCTAATTCTGTTACCTGATACTGATTCTGACTCTGTCACCTAATACTGATTCTG
* * *
67993657 ATTCTAATTCTAATTCTGTTACCTGATACTGATTCTGATTCTGTCACCTGATTCTGATTCTG
1 ATTCTAATTCTAATTCTGTTACCTGATACTGATTCTGACTCTGTCACCTAATACTGATTCTG
67993719 ATTCT
1 ATTCT
67993724 CATTTTGATT
Statistics
Matches: 63, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
62 63 1.00
ACGTcount: A:0.22, C:0.22, G:0.12, T:0.44
Consensus pattern (62 bp):
ATTCTAATTCTAATTCTGTTACCTGATACTGATTCTGACTCTGTCACCTAATACTGATTCTG
Found at i:67995808 original size:27 final size:26
Alignment explanation
Indices: 67995709--67995806 Score: 133
Period size: 27 Copynumber: 3.7 Consensus size: 26
67995699 TTTAGTTTAC
* * *
67995709 AAAATTACCAAAATACCCTCGATTAGC
1 AAAATTACCAAAATACCCT-GGTTTGT
*
67995736 AAAATTACCAAAATACCATGGTTTGT
1 AAAATTACCAAAATACCCTGGTTTGT
67995762 AAAATTACCAAAATACCCCTGGTTTGT
1 AAAATTACCAAAATA-CCCTGGTTTGT
*
67995789 GAAATTACCAAAATACCC
1 AAAATTACCAAAATACCC
67995807 CTAATTTTTT
Statistics
Matches: 64, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
26 22 0.34
27 42 0.66
ACGTcount: A:0.43, C:0.22, G:0.09, T:0.26
Consensus pattern (26 bp):
AAAATTACCAAAATACCCTGGTTTGT
Found at i:67995886 original size:27 final size:27
Alignment explanation
Indices: 67995709--67995887 Score: 100
Period size: 27 Copynumber: 6.7 Consensus size: 27
67995699 TTTAGTTTAC
**
67995709 AAAATTACCAAAATACCCTCGA-TTAGC
1 AAAATTACCAAAATACCCTCGACTT-TT
* *
67995736 AAAATTACCAAAATACCAT-G-GTTTGT
1 AAAATTACCAAAATACCCTCGACTTT-T
*
67995762 AAAATTACCAAAATACCC-CTG-GTTTGT
1 AAAATTACCAAAATACCCTC-GACTTT-T
* * *
67995789 GAAATTACCAAAATACCC-CTAATTTTT
1 AAAATTACCAAAATACCCTC-GACTTTT
* *** * * *
67995816 TAAATTATTGAAAGACCCTCAACTTGT
1 AAAATTACCAAAATACCCTCGACTTTT
***
67995843 AAAATTATTGAAATACCCTCGACTTTT
1 AAAATTACCAAAATACCCTCGACTTTT
*
67995870 AAAATTACCAAAGTACCC
1 AAAATTACCAAAATACCC
67995888 CTAATTTATA
Statistics
Matches: 124, Mismatches: 22, Indels: 12
0.78 0.14 0.08
Matches are distributed among these distances:
26 20 0.16
27 100 0.81
28 4 0.03
ACGTcount: A:0.41, C:0.21, G:0.08, T:0.30
Consensus pattern (27 bp):
AAAATTACCAAAATACCCTCGACTTTT
Found at i:67995956 original size:27 final size:27
Alignment explanation
Indices: 67995926--67996051 Score: 148
Period size: 27 Copynumber: 4.7 Consensus size: 27
67995916 CGGTTTACAA
*
67995926 AATTATTGAAATACCCTTGTAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAG
* *
67995953 AATTACT-AGAATACCCCTGTTGGGTAG
1 AATTACTGA-AATACCCTTGTAGGGTAG
*
67995980 AATTACTGAAATACCCTTGTAAGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAG
* *
67996007 AAATACCGAAATA-CCTCTGTAGGGTAG
1 AATTACTGAAATACCCT-TGTAGGGTAG
* *
67996034 AATTACCGAGATACCCTT
1 AATTACTGAAATACCCTT
67996052 TTGGGATAAA
Statistics
Matches: 84, Mismatches: 11, Indels: 8
0.82 0.11 0.08
Matches are distributed among these distances:
26 4 0.05
27 76 0.90
28 4 0.05
ACGTcount: A:0.34, C:0.17, G:0.20, T:0.29
Consensus pattern (27 bp):
AATTACTGAAATACCCTTGTAGGGTAG
Found at i:67995968 original size:54 final size:54
Alignment explanation
Indices: 67995896--67996008 Score: 120
Period size: 54 Copynumber: 2.1 Consensus size: 54
67995886 CCCTAATTTA
*** * * *
67995896 TAGAATTACTATTTTACCCTCGGTT-TACAAAATTATTGAAATACCCTTGTAGGG
1 TAGAATTACTAGAATACCC-CGGTTGGACAAAATTACTGAAATACCCTTGTAAGG
* ** *
67995950 TAGAATTACTAGAATACCCCTGTTGGGTAGAATTACTGAAATACCCTTGTAAGG
1 TAGAATTACTAGAATACCCCGGTTGGACAAAATTACTGAAATACCCTTGTAAGG
67996004 TAGAA
1 TAGAA
67996009 ATACCGAAAT
Statistics
Matches: 48, Mismatches: 10, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
53 4 0.08
54 44 0.92
ACGTcount: A:0.34, C:0.16, G:0.18, T:0.33
Consensus pattern (54 bp):
TAGAATTACTAGAATACCCCGGTTGGACAAAATTACTGAAATACCCTTGTAAGG
Found at i:67996020 original size:54 final size:54
Alignment explanation
Indices: 67995926--67996051 Score: 164
Period size: 54 Copynumber: 2.3 Consensus size: 54
67995916 CGGTTTACAA
* * * * *
67995926 AATTATTGAAATACCCTTGTAGGGTAGAATTACTAGAATACCCCTGTTGGGTAG
1 AATTACTGAAATACCCTTGTAAGGTAGAAATACGAGAATACCCCTGTAGGGTAG
*
67995980 AATTACTGAAATACCCTTGTAAGGTAGAAATACCGA-AATACCTCTGTAGGGTAG
1 AATTACTGAAATACCCTTGTAAGGTAGAAATA-CGAGAATACCCCTGTAGGGTAG
* *
67996034 AATTACCGAGATACCCTT
1 AATTACTGAAATACCCTT
67996052 TTGGGATAAA
Statistics
Matches: 63, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
54 61 0.97
55 2 0.03
ACGTcount: A:0.34, C:0.17, G:0.20, T:0.29
Consensus pattern (54 bp):
AATTACTGAAATACCCTTGTAAGGTAGAAATACGAGAATACCCCTGTAGGGTAG
Found at i:67996642 original size:21 final size:22
Alignment explanation
Indices: 67996581--67996642 Score: 74
Period size: 22 Copynumber: 2.9 Consensus size: 22
67996571 GCCAATTATT
*
67996581 CTGATTATGGCTTTGCGCCAAC
1 CTGATTATGGCTTTGTGCCAAC
*
67996603 CT-ACATATGGCTTTGTGCCAAC
1 CTGA-TTATGGCTTTGTGCCAAC
*
67996625 CTGATTAT-GCTATGTGCC
1 CTGATTATGGCTTTGTGCC
67996643 GTTATTGTGG
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
21 10 0.29
22 23 0.68
23 1 0.03
ACGTcount: A:0.19, C:0.26, G:0.21, T:0.34
Consensus pattern (22 bp):
CTGATTATGGCTTTGTGCCAAC
Found at i:67996759 original size:27 final size:26
Alignment explanation
Indices: 67996729--67996807 Score: 104
Period size: 27 Copynumber: 3.0 Consensus size: 26
67996719 ATTCTGTTAA
* *
67996729 GTGGCTTTGCCACATTATCTGATTCTG
1 GTGGCTCTGCCACAATATCTG-TTCTG
67996756 GTGGCTCTGCCACAATATCTGTATCTG
1 GTGGCTCTGCCACAATATCTGT-TCTG
* *
67996783 GTGACTCTGTCACAATATCTGTTCT
1 GTGGCTCTGCCACAATATCTGTTCT
67996808 AGCCATGCTG
Statistics
Matches: 47, Mismatches: 4, Indels: 3
0.87 0.07 0.06
Matches are distributed among these distances:
26 4 0.09
27 43 0.91
ACGTcount: A:0.18, C:0.24, G:0.20, T:0.38
Consensus pattern (26 bp):
GTGGCTCTGCCACAATATCTGTTCTG
Found at i:67996933 original size:6 final size:6
Alignment explanation
Indices: 67996924--67997042 Score: 59
Period size: 6 Copynumber: 19.3 Consensus size: 6
67996914 TTGCATTCAC
* * * *
67996924 ATTCTG ATTCTG ATTCT- ATTACTTG ATACTG ATTTTG ATTCTG -TCACCTA
1 ATTCTG ATTCTG ATTCTG ATT-C-TG ATTCTG ATTCTG ATTCTG AT--TCTG
* * *
67996974 ATAT-TG ATTCTG ATTCTG ATTCTG -TCACCTG ATTCTG ATTTTG ATTCTC
1 AT-TCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG
*
67997023 ATTTTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG A-TTCTG AT
67997043 AATTTTTCTT
Statistics
Matches: 85, Mismatches: 16, Indels: 24
0.68 0.13 0.19
Matches are distributed among these distances:
5 7 0.08
6 65 0.76
7 9 0.11
8 4 0.05
ACGTcount: A:0.20, C:0.17, G:0.13, T:0.50
Consensus pattern (6 bp):
ATTCTG
Found at i:67997006 original size:25 final size:25
Alignment explanation
Indices: 67996924--67997021 Score: 88
Period size: 25 Copynumber: 3.7 Consensus size: 25
67996914 TTGCATTCAC
* * *
67996924 ATTCTGATTCTGATTCTATTACTTG
1 ATTCTGATTCTGATTCTGTCACCTG
* *
67996949 ATACTGATTTTGATTCTGTCACCTAATATTG
1 ATTCTGATTCTGATTCTGTCACC------TG
67996980 ATTCTGATTCTGATTCTGTCACCTG
1 ATTCTGATTCTGATTCTGTCACCTG
*
67997005 ATTCTGATTTTGATTCT
1 ATTCTGATTCTGATTCT
67997022 CATTTTGATT
Statistics
Matches: 59, Mismatches: 8, Indels: 12
0.75 0.10 0.15
Matches are distributed among these distances:
25 36 0.61
31 23 0.39
ACGTcount: A:0.20, C:0.17, G:0.13, T:0.49
Consensus pattern (25 bp):
ATTCTGATTCTGATTCTGTCACCTG
Found at i:67997013 original size:31 final size:31
Alignment explanation
Indices: 67996946--67997021 Score: 100
Period size: 31 Copynumber: 2.5 Consensus size: 31
67996936 ATTCTATTAC
* *
67996946 TTGATACTGATTTTGATTCTGTCACCTAATA
1 TTGATTCTGATTCTGATTCTGTCACCTAATA
*
67996977 TTGATTCTGATTCTGATTCTGTCACCTGAT-
1 TTGATTCTGATTCTGATTCTGTCACCTAATA
*
67997007 TCTGATTTTGATTCT
1 T-TGATTCTGATTCT
67997022 CATTTTGATT
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
30 1 0.03
31 39 0.98
ACGTcount: A:0.20, C:0.17, G:0.14, T:0.49
Consensus pattern (31 bp):
TTGATTCTGATTCTGATTCTGTCACCTAATA
Found at i:67998376 original size:27 final size:27
Alignment explanation
Indices: 67998346--67998412 Score: 80
Period size: 27 Copynumber: 2.4 Consensus size: 27
67998336 ATATATATAC
*
67998346 ATCACATAGGGGAAAAATAGTCATCTT
1 ATCACATAAGGGAAAAATAGTCATCTT
* * *
67998373 ATCATATAAGGGCAAAATAGTCATTTT
1 ATCACATAAGGGAAAAATAGTCATCTT
*
67998400 ATCATATATAGGG
1 ATCACATA-AGGG
67998413 GGTCTGGGTA
Statistics
Matches: 35, Mismatches: 4, Indels: 1
0.88 0.10 0.03
Matches are distributed among these distances:
27 31 0.89
28 4 0.11
ACGTcount: A:0.40, C:0.12, G:0.18, T:0.30
Consensus pattern (27 bp):
ATCACATAAGGGAAAAATAGTCATCTT
Found at i:67998389 original size:28 final size:28
Alignment explanation
Indices: 67998359--67998412 Score: 92
Period size: 27 Copynumber: 2.0 Consensus size: 28
67998349 ACATAGGGGA
67998359 AAAATAGTCATCTTATCATATA-AGGGC
1 AAAATAGTCATCTTATCATATATAGGGC
*
67998386 AAAATAGTCATTTTATCATATATAGGG
1 AAAATAGTCATCTTATCATATATAGGG
67998413 GGTCTGGGTA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
27 21 0.84
28 4 0.16
ACGTcount: A:0.41, C:0.11, G:0.15, T:0.33
Consensus pattern (28 bp):
AAAATAGTCATCTTATCATATATAGGGC
Found at i:68017385 original size:18 final size:18
Alignment explanation
Indices: 68017362--68017398 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
68017352 AACCGGAGTT
68017362 TTAACAATGAACAAGATA
1 TTAACAATGAACAAGATA
68017380 TTAACAATGAACAAGATA
1 TTAACAATGAACAAGATA
68017398 T
1 T
68017399 CTTGACTTGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.54, C:0.11, G:0.11, T:0.24
Consensus pattern (18 bp):
TTAACAATGAACAAGATA
Found at i:68025102 original size:40 final size:40
Alignment explanation
Indices: 68025044--68025119 Score: 116
Period size: 40 Copynumber: 1.9 Consensus size: 40
68025034 CACGTATATA
*
68025044 TAGCCAAAGCTATCTCAAATTGCACACCAAGTGCCACATT
1 TAGCCAAAGCTATCTCAAACTGCACACCAAGTGCCACATT
* * *
68025084 TAGCCGAAGCTATTTCAAACTGCACACTAAGTGCCA
1 TAGCCAAAGCTATCTCAAACTGCACACCAAGTGCCA
68025120 TTCTTAATTG
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 32 1.00
ACGTcount: A:0.34, C:0.29, G:0.14, T:0.22
Consensus pattern (40 bp):
TAGCCAAAGCTATCTCAAACTGCACACCAAGTGCCACATT
Found at i:68030479 original size:17 final size:18
Alignment explanation
Indices: 68030449--68030483 Score: 63
Period size: 17 Copynumber: 2.0 Consensus size: 18
68030439 ACACTCTAGT
68030449 TAGTGAATACTGAAACTG
1 TAGTGAATACTGAAACTG
68030467 TAGTGAA-ACTGAAACTG
1 TAGTGAATACTGAAACTG
68030484 ATAAAGACAG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 10 0.59
18 7 0.41
ACGTcount: A:0.40, C:0.11, G:0.23, T:0.26
Consensus pattern (18 bp):
TAGTGAATACTGAAACTG
Found at i:68040589 original size:13 final size:12
Alignment explanation
Indices: 68040566--68040596 Score: 53
Period size: 13 Copynumber: 2.5 Consensus size: 12
68040556 TAGAGCAAGG
68040566 GTATTGATATTC
1 GTATTGATATTC
68040578 GTATTCGATATTC
1 GTATT-GATATTC
68040591 GTATTG
1 GTATTG
68040597 TAAAATCAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 6 0.33
13 12 0.67
ACGTcount: A:0.23, C:0.10, G:0.19, T:0.48
Consensus pattern (12 bp):
GTATTGATATTC
Found at i:68046739 original size:48 final size:48
Alignment explanation
Indices: 68046662--68046841 Score: 175
Period size: 48 Copynumber: 3.9 Consensus size: 48
68046652 GTCCCAGACA
* * *
68046662 TGGCTTACACTTAACGATACCGATGCCATGTCCCAGATATGGTCTTACAC
1 TGGCTTACA--TAACGATGCTGATGCCATGTCCCAGACATGGTCTTACAC
* *
68046712 TGGCTTACATAACAATGCTGATGCCATGTCCTAGACA------T--A-
1 TGGCTTACATAACGATGCTGATGCCATGTCCCAGACATGGTCTTACAC
*
68046751 T--CTTACATAACGATGTTGATGCCATGTCCCAGACATGGTCTTACAC
1 TGGCTTACATAACGATGCTGATGCCATGTCCCAGACATGGTCTTACAC
* ** *
68046797 TGGCTCACATAACGACACCGATGCCATGTCCCAGACATGGTCTTA
1 TGGCTTACATAACGATGCTGATGCCATGTCCCAGACATGGTCTTA
68046842 TATAGGATCA
Statistics
Matches: 106, Mismatches: 13, Indels: 24
0.74 0.09 0.17
Matches are distributed among these distances:
37 31 0.29
39 1 0.01
40 1 0.01
42 1 0.01
43 1 0.01
45 1 0.01
46 1 0.01
48 60 0.57
50 9 0.08
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.27
Consensus pattern (48 bp):
TGGCTTACATAACGATGCTGATGCCATGTCCCAGACATGGTCTTACAC
Found at i:68046771 original size:37 final size:38
Alignment explanation
Indices: 68046715--68046795 Score: 119
Period size: 37 Copynumber: 2.2 Consensus size: 38
68046705 CTTACACTGG
*
68046715 CTTACATAACAATGCTGATGCCATGTCCTAGACAT-AT
1 CTTACATAACAATGCTGATGCCATGTCCCAGACATGAT
* * *
68046752 CTTACATAACGATGTTGATGCCATGTCCCAGACATGGT
1 CTTACATAACAATGCTGATGCCATGTCCCAGACATGAT
68046790 CTTACA
1 CTTACA
68046796 CTGGCTCACA
Statistics
Matches: 39, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
37 32 0.82
38 7 0.18
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.30
Consensus pattern (38 bp):
CTTACATAACAATGCTGATGCCATGTCCCAGACATGAT
Found at i:68046782 original size:85 final size:86
Alignment explanation
Indices: 68046646--68046834 Score: 254
Period size: 85 Copynumber: 2.2 Consensus size: 86
68046636 CTCATGCCGT
* *
68046646 TGCCATGTCCCAGACATGGCTTACACTTAACGATACCGATGCCATGTCCCAGATATGGTCTTACA
1 TGCCATGTCCCAGACATAGCTTACAC-TAACGATACCGATGCCATGTCCCAGACATGGTCTTACA
* ** *
68046711 CTGGCTTACATAACAATGCTGA
65 CTGGCTCACATAACAACACCGA
* * ***
68046733 TGCCATGTCCTAGACATATCTTACA-TAACGATGTTGATGCCATGTCCCAGACATGGTCTTACAC
1 TGCCATGTCCCAGACATAGCTTACACTAACGATACCGATGCCATGTCCCAGACATGGTCTTACAC
*
68046797 TGGCTCACATAACGACACCGA
66 TGGCTCACATAACAACACCGA
68046818 TGCCATGTCCCAGACAT
1 TGCCATGTCCCAGACAT
68046835 GGTCTTATAT
Statistics
Matches: 89, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
85 67 0.75
87 22 0.25
ACGTcount: A:0.28, C:0.29, G:0.18, T:0.26
Consensus pattern (86 bp):
TGCCATGTCCCAGACATAGCTTACACTAACGATACCGATGCCATGTCCCAGACATGGTCTTACAC
TGGCTCACATAACAACACCGA
Found at i:68048160 original size:125 final size:125
Alignment explanation
Indices: 68047938--68048194 Score: 514
Period size: 125 Copynumber: 2.1 Consensus size: 125
68047928 CTAGTAGAAC
68047938 ATAATTTTCACTCTTTATGCGATTTAATTCTTTTTCAAAATCAAGCATGCAACTGCTAAAATTAA
1 ATAATTTTCACTCTTTATGCGATTTAATTCTTTTTCAAAATCAAGCATGCAACTGCTAAAATTAA
68048003 TTCACCAAACTTTTCAAATATCTATAAAATCATGCTATAACACATAAAATAATATCAAAA
66 TTCACCAAACTTTTCAAATATCTATAAAATCATGCTATAACACATAAAATAATATCAAAA
68048063 ATAATTTTCACTCTTTATGCGATTTAATTCTTTTTCAAAATCAAGCATGCAACTGCTAAAATTAA
1 ATAATTTTCACTCTTTATGCGATTTAATTCTTTTTCAAAATCAAGCATGCAACTGCTAAAATTAA
68048128 TTCACCAAACTTTTCAAATATCTATAAAATCATGCTATAACACATAAAATAATATCAAAA
66 TTCACCAAACTTTTCAAATATCTATAAAATCATGCTATAACACATAAAATAATATCAAAA
68048188 ATAATTT
1 ATAATTT
68048195 CATCGACCTC
Statistics
Matches: 132, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
125 132 1.00
ACGTcount: A:0.42, C:0.17, G:0.05, T:0.36
Consensus pattern (125 bp):
ATAATTTTCACTCTTTATGCGATTTAATTCTTTTTCAAAATCAAGCATGCAACTGCTAAAATTAA
TTCACCAAACTTTTCAAATATCTATAAAATCATGCTATAACACATAAAATAATATCAAAA
Found at i:68050561 original size:37 final size:37
Alignment explanation
Indices: 68050506--68050606 Score: 112
Period size: 37 Copynumber: 2.7 Consensus size: 37
68050496 CGTTTACTTG
* *
68050506 ATGCCATAGTCCAACTATGGTCTTACACAAAATCACA
1 ATGCCATAGCCCAGCTATGGTCTTACACAAAATCACA
**** * *
68050543 ATGCCATAGCCCAGCTATGGTCTTACATGTCATTACG
1 ATGCCATAGCCCAGCTATGGTCTTACACAAAATCACA
* *
68050580 ATGCCATAGCCTAGCTGTGGTCTTACA
1 ATGCCATAGCCCAGCTATGGTCTTACA
68050607 TTCCATACTT
Statistics
Matches: 54, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
37 54 1.00
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.28
Consensus pattern (37 bp):
ATGCCATAGCCCAGCTATGGTCTTACACAAAATCACA
Found at i:68054425 original size:16 final size:16
Alignment explanation
Indices: 68054391--68054435 Score: 54
Period size: 16 Copynumber: 2.7 Consensus size: 16
68054381 TATTTCATTG
*
68054391 AATCCCTAACAATCTTCA
1 AATCCCT-A-AATCCTCA
68054409 AATCCCTAAATCCTCA
1 AATCCCTAAATCCTCA
*
68054425 AATACCTAAAT
1 AATCCCTAAAT
68054436 TATTAGTATT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
16 17 0.68
17 1 0.04
18 7 0.28
ACGTcount: A:0.42, C:0.31, G:0.00, T:0.27
Consensus pattern (16 bp):
AATCCCTAAATCCTCA
Found at i:68055525 original size:22 final size:22
Alignment explanation
Indices: 68055495--68055539 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
68055485 TAAGCATATG
* *
68055495 ATTTGGATAAATGTACTTTACA
1 ATTTCGATAAATGTACTTCACA
68055517 ATTTCGATAAATGTACTTCACA
1 ATTTCGATAAATGTACTTCACA
68055539 A
1 A
68055540 AAGCATATGA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.38, C:0.13, G:0.11, T:0.38
Consensus pattern (22 bp):
ATTTCGATAAATGTACTTCACA
Found at i:68058263 original size:51 final size:51
Alignment explanation
Indices: 68058205--68058356 Score: 214
Period size: 51 Copynumber: 3.0 Consensus size: 51
68058195 TACGTGCAGT
* * * *
68058205 AGCAACATTATCCAGTCCATTTGATGTTGGAAAATCACCAGCGTATTCATC
1 AGCAACATTATCCACTCCATCTGATGTTGCAAAATCACCAGCATATTCATC
* * * * *
68058256 AGGAACATTATCAACTTCATCTGATGTTACAAAATCACCAACATATTCATC
1 AGCAACATTATCCACTCCATCTGATGTTGCAAAATCACCAGCATATTCATC
*
68058307 AGCAACATTATCCACTCCATCTGATGTTGTAAAATCACCAGCATATTCAT
1 AGCAACATTATCCACTCCATCTGATGTTGCAAAATCACCAGCATATTCAT
68058357 TACCAGCAAC
Statistics
Matches: 86, Mismatches: 15, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
51 86 1.00
ACGTcount: A:0.35, C:0.24, G:0.11, T:0.30
Consensus pattern (51 bp):
AGCAACATTATCCACTCCATCTGATGTTGCAAAATCACCAGCATATTCATC
Found at i:68059311 original size:117 final size:117
Alignment explanation
Indices: 68059181--68059391 Score: 325
Period size: 117 Copynumber: 1.8 Consensus size: 117
68059171 GGTACTAGAA
* *
68059181 ATCAACATCATCGGGACCACAAGT-GCATCACAAATCGACAAAACAAACCCTACATTCTAGCACT
1 ATCAACAACATCGGGACCACAA-TCGCATCAAAAATCGACAAAACAAACCCTACATTCTAGCACT
* *
68059245 GAAATTGCAATAATAAATCACAATTAACCATCTACAATTTTTACAACAGTTTT
65 CAAATTGCAATAATAAATCACAAATAACCATCTACAATTTTTACAACAGTTTT
* * * *
68059298 ATCAACAACATCGGGACCACTATCGCATCAAAAATCGAGAAAACAAACCCTACATTGTCGCACTC
1 ATCAACAACATCGGGACCACAATCGCATCAAAAATCGACAAAACAAACCCTACATTCTAGCACTC
*
68059363 AAATTGCAATACTAAATCACAAATAACCA
66 AAATTGCAATAATAAATCACAAATAACCA
68059392 ACAAATCAAA
Statistics
Matches: 84, Mismatches: 9, Indels: 2
0.88 0.09 0.02
Matches are distributed among these distances:
116 1 0.01
117 83 0.99
ACGTcount: A:0.43, C:0.26, G:0.09, T:0.22
Consensus pattern (117 bp):
ATCAACAACATCGGGACCACAATCGCATCAAAAATCGACAAAACAAACCCTACATTCTAGCACTC
AAATTGCAATAATAAATCACAAATAACCATCTACAATTTTTACAACAGTTTT
Found at i:68059600 original size:16 final size:16
Alignment explanation
Indices: 68059579--68059613 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
68059569 AATGCTAACA
*
68059579 ATTTAGGTATTTAAAG
1 ATTTAGGGATTTAAAG
*
68059595 ATTTAGGGATTTGAAG
1 ATTTAGGGATTTAAAG
68059611 ATT
1 ATT
68059614 GTTAGAGATT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.34, C:0.00, G:0.23, T:0.43
Consensus pattern (16 bp):
ATTTAGGGATTTAAAG
Found at i:68067271 original size:48 final size:47
Alignment explanation
Indices: 68067131--68067295 Score: 171
Period size: 48 Copynumber: 3.6 Consensus size: 47
68067121 TCGGCGTGTT
* * * *
68067131 GATGCCATGTCCCAAACA-GGTCTTATACGGGATCACATAATGATGCC
1 GATGCCATGTCCCAGACATGGTCTTACA-TGGATCACATAACGATGCC
* * *
68067178 GACGCCATGTCCCAGACATGGTATTACACTGGCTCACATAACGATGCC
1 GATGCCATGTCCCAGACATGGTCTTACA-TGGATCACATAACGATGCC
*
68067226 GATGCCATGTCCCAGACATGGTCTTACATGG-T---ATTAC-ATGCC
1 GATGCCATGTCCCAGACATGGTCTTACATGGATCACATAACGATGCC
* * *
68067268 GATGCCATATCCCAAATATGGTCTTACA
1 GATGCCATGTCCCAGACATGGTCTTACA
68067296 CGGTTACACA
Statistics
Matches: 104, Mismatches: 13, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
42 30 0.29
43 4 0.04
46 1 0.01
47 19 0.18
48 50 0.48
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.25
Consensus pattern (47 bp):
GATGCCATGTCCCAGACATGGTCTTACATGGATCACATAACGATGCC
Found at i:68068481 original size:44 final size:44
Alignment explanation
Indices: 68068431--68068515 Score: 136
Period size: 44 Copynumber: 1.9 Consensus size: 44
68068421 TATATATGAG
*
68068431 GCATCCGAGC-TCATTGAGTCGGTCCGAGTTGATTATGGATGCGA
1 GCATCCGAGCTTC-TTGAGTCGGTCCGAGTTCATTATGGATGCGA
*
68068475 GCATCCGAGCTTCTTGAGTTGGTCCGAGTTCATTATGGATG
1 GCATCCGAGCTTCTTGAGTCGGTCCGAGTTCATTATGGATG
68068516 TGATAAATGT
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
44 36 0.95
45 2 0.05
ACGTcount: A:0.19, C:0.20, G:0.31, T:0.31
Consensus pattern (44 bp):
GCATCCGAGCTTCTTGAGTCGGTCCGAGTTCATTATGGATGCGA
Found at i:68070878 original size:49 final size:48
Alignment explanation
Indices: 68070822--68071002 Score: 165
Period size: 49 Copynumber: 3.7 Consensus size: 48
68070812 TGTTGTGTGT
* **
68070822 CAGTGTAAGACCTCTCTATGACATGGCATCGACATTGATAGATGATAGC
1 CAGTGTAAGACCTATCTGGGACATGGCATCGACATTGATAGATGA-AGC
* * * * *
68070871 CAGTGTAAGACCTGTTTGGGACATGACATC-AGC-TTCGATATATGAAAGT
1 CAGTGTAAGACCTATCTGGGACATGGCATCGA-CATT-GATAGATG-AAGC
68070920 CAGTGTAAGACCTATCTGGGACATGGCATCGA-ATTTGAT-G-TGCAAGC
1 CAGTGTAAGACCTATCTGGGACATGGCATCGACA-TTGATAGATG-AAGC
* * *
68070967 CAGTGTAAGACCATGTTTGGGACATGGCGTCGACAT
1 CAGTGTAAGACC-TATCTGGGACATGGCATCGACAT
68071003 CTTATCCCAT
Statistics
Matches: 108, Mismatches: 16, Indels: 17
0.77 0.11 0.12
Matches are distributed among these distances:
47 17 0.16
48 21 0.19
49 66 0.61
50 4 0.04
ACGTcount: A:0.29, C:0.19, G:0.26, T:0.27
Consensus pattern (48 bp):
CAGTGTAAGACCTATCTGGGACATGGCATCGACATTGATAGATGAAGC
Found at i:68073159 original size:19 final size:19
Alignment explanation
Indices: 68073127--68073173 Score: 76
Period size: 19 Copynumber: 2.5 Consensus size: 19
68073117 TGGAGGACAG
68073127 GGGCGTGTCAAGAGCACAC
1 GGGCGTGTCAAGAGCACAC
* *
68073146 GGGTGTGTCGAGAGCACAC
1 GGGCGTGTCAAGAGCACAC
68073165 GGGCGTGTC
1 GGGCGTGTC
68073174 CTCTGTCTCA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.19, C:0.23, G:0.43, T:0.15
Consensus pattern (19 bp):
GGGCGTGTCAAGAGCACAC
Found at i:68077772 original size:28 final size:28
Alignment explanation
Indices: 68077740--68077867 Score: 175
Period size: 29 Copynumber: 4.5 Consensus size: 28
68077730 ATAGTAAGTC
*
68077740 CGCACACTTAGTGTTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
68077768 CGCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGC-TATATAATCAAACT
68077797 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* ** * *
68077825 TGCACACTTAGTGCTATGCAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
68077854 CGCACACTTAGTGC
1 CGCACACTTAGTGC
68077868 CAATCTCATG
Statistics
Matches: 89, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
28 44 0.49
29 45 0.51
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:68077830 original size:57 final size:57
Alignment explanation
Indices: 68077739--68077867 Score: 188
Period size: 57 Copynumber: 2.3 Consensus size: 57
68077729 TATAGTAAGT
*
68077739 CCGCACACTTAGTGTTATATAATCAAACTCGCACACTTAGTGCT-TACATAATCAAAC
1 CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATACA-AATCAAAC
* * * * *
68077796 TCGCACACTTAGTGCTATATAATCAAACTTGCACACTTAGTGCTATGCAATTTAAAC
1 CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATACAAATCAAAC
68077853 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
68077868 CAATCTCATG
Statistics
Matches: 64, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
57 61 0.95
58 3 0.05
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29
Consensus pattern (57 bp):
CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATACAAATCAAAC
Found at i:68085822 original size:28 final size:28
Alignment explanation
Indices: 68085790--68085887 Score: 133
Period size: 28 Copynumber: 3.5 Consensus size: 28
68085780 TAGTAAGTCT
*
68085790 GCACACTTAGTGTTATATAATCAAACTC
1 GCACACTTAGTGCTATATAATCAAACTC
*
68085818 GCACACTTAGTGCTATATAATCAAACTT
1 GCACACTTAGTGCTATATAATCAAACTC
** * *
68085846 GCACACTTAGTGCTATGCAATTTAAACCC
1 GCACACTTAGTGCTATATAA-TCAAACTC
68085875 GCACACTTAGTGC
1 GCACACTTAGTGC
68085888 CAATCTCATG
Statistics
Matches: 62, Mismatches: 7, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
28 44 0.71
29 18 0.29
ACGTcount: A:0.33, C:0.24, G:0.13, T:0.30
Consensus pattern (28 bp):
GCACACTTAGTGCTATATAATCAAACTC
Found at i:68088955 original size:93 final size:93
Alignment explanation
Indices: 68088847--68089019 Score: 258
Period size: 93 Copynumber: 1.9 Consensus size: 93
68088837 CGCCCATAAG
* * * * * * *
68088847 CGAACTCAGACTCAACTCAACGAGCTC-AGGCGTTCGCATCTATAAGTGAACTCGGACTCAACTG
1 CGAACTCAGACTCAACTCAACAAGCTCGA-ACATTCGCATCCATAAGTAAACTCAGACTCAACTC
68088911 AACGAGCTCGGATGCCTAGTTACATCTCA
65 AACGAGCTCGGATGCCTAGTTACATCTCA
*
68088940 CGAACTCAGACTCAACTCAACAAGCTCGAACATTCGCATCCATAAGTAAACTCAGACTCGACTCA
1 CGAACTCAGACTCAACTCAACAAGCTCGAACATTCGCATCCATAAGTAAACTCAGACTCAACTCA
68089005 ACGAGCTCGGATGCC
66 ACGAGCTCGGATGCC
68089020 CAAATATCTT
Statistics
Matches: 71, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
93 70 0.99
94 1 0.01
ACGTcount: A:0.31, C:0.31, G:0.18, T:0.20
Consensus pattern (93 bp):
CGAACTCAGACTCAACTCAACAAGCTCGAACATTCGCATCCATAAGTAAACTCAGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCA
Found at i:68093616 original size:44 final size:43
Alignment explanation
Indices: 68093516--68093639 Score: 142
Period size: 44 Copynumber: 2.8 Consensus size: 43
68093506 TTAGAAATCT
* *
68093516 GAACTCATTGAGTTGGTCC-AGTTTCGTGATATGTATGAGGCATCC
1 GAACTCATTGAGTTGGTCCGAG-TTCAT--TATGGATGAGGCATCC
* * * *
68093561 GAGCTCGTTGAGTTGGTCCGAGTTCATTAGGGATGCGAGCATCC
1 GAACTCATTGAGTTGGTCCGAGTTCATTATGGATGAG-GCATCC
*
68093605 GAACTCATTGAGTTGGTTCGAGTTCATTATGGATG
1 GAACTCATTGAGTTGGTCCGAGTTCATTATGGATG
68093640 TGATAAATGT
Statistics
Matches: 67, Mismatches: 10, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
43 7 0.10
44 37 0.55
45 21 0.31
46 2 0.03
ACGTcount: A:0.21, C:0.17, G:0.30, T:0.32
Consensus pattern (43 bp):
GAACTCATTGAGTTGGTCCGAGTTCATTATGGATGAGGCATCC
Found at i:68095934 original size:48 final size:48
Alignment explanation
Indices: 68095878--68095976 Score: 144
Period size: 48 Copynumber: 2.1 Consensus size: 48
68095868 GAGTATATGT
* * *
68095878 GATACATTGAGTTGGTTTCGGGCCATGATATTGGCACGTCGGGTGCGA
1 GATACATTGAGTTGGCTTCAGGCCATGATATTGGCACGTAGGGTGCGA
* * *
68095926 GATACATTGAGTTGGCTTCAGGCCGTGATATTGGCACTTAGTGTGCGA
1 GATACATTGAGTTGGCTTCAGGCCATGATATTGGCACGTAGGGTGCGA
68095974 GAT
1 GAT
68095977 TCCCGTGTAT
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
48 45 1.00
ACGTcount: A:0.20, C:0.16, G:0.33, T:0.30
Consensus pattern (48 bp):
GATACATTGAGTTGGCTTCAGGCCATGATATTGGCACGTAGGGTGCGA
Done.