Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 211 of 349
Found at i:68103097 original size:47 final size:47
Alignment explanation
Indices: 68102974--68103846 Score: 1496
Period size: 47 Copynumber: 18.3 Consensus size: 47
68102964 TACATGATAG
68102974 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG----TA
68103025 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
* *
68103072 TATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTTTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
*
68103119 TATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TA
68103168 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
*
68103215 TATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TA
*
68103264 TATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
*
68103311 TATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TA
68103360 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
*
68103407 TATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TA
*
68103456 TATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
68103503 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
*
68103550 TATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TA
*
68103599 TATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
68103646 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
68103693 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
68103740 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
*
68103787 TATATGTGATAAGG-CTGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCT-AATGGCCGATGTGATGAATGTGAAAGTGTA
*
68103834 TAAATGTGATAAG
1 TATATGTGATAAG
68103847 TCCCGAAGGG
Statistics
Matches: 793, Mismatches: 18, Indels: 26
0.95 0.02 0.03
Matches are distributed among these distances:
46 2 0.00
47 515 0.65
49 231 0.29
51 45 0.06
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (47 bp):
TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
Found at i:68103196 original size:96 final size:96
Alignment explanation
Indices: 68102974--68103846 Score: 1516
Period size: 96 Copynumber: 9.1 Consensus size: 96
68102964 TACATGATAG
68102974 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATATGTGATAAGG
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG----TATATATGTGATAAGG
*
68103039 CCTAATGGCCGATGTGATGAATGTGAAAGTG--TA
62 CCTAATGGCCGATGTGGTGAATGTGAAAGTGTATA
* *
68103072 TATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTTTATATATGTGATAAGGCCTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTA
68103137 ATGGCCGATGTGGTGAATGTGAAAGTGTATA
66 ATGGCCGATGTGGTGAATGTGAAAGTGTATA
68103168 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTA
68103233 ATGGCCGATGTGGTGAATGTGAAAGTGTATA
66 ATGGCCGATGTGGTGAATGTGAAAGTGTATA
*
68103264 TATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTA
68103329 ATGGCCGATGTGGTGAATGTGAAAGTGTATA
66 ATGGCCGATGTGGTGAATGTGAAAGTGTATA
68103360 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTA
68103425 ATGGCCGATGTGGTGAATGTGAAAGTGTATA
66 ATGGCCGATGTGGTGAATGTGAAAGTGTATA
*
68103456 TATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATATATGTGATAAGGCCTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTA
*
68103521 ATGGCCGATGTGATGAATGTGAAAGTG--TA
66 ATGGCCGATGTGGTGAATGTGAAAGTGTATA
*
68103550 TATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
68103615 TAATGGCCGATGTGGTGAATGTGAAAGTG--TA
64 TAATGGCCGATGTGGTGAATGTGAAAGTGTATA
68103646 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTA
*
68103711 ATGGCCGATGTGATGAATGTGAAAGTG--TA
66 ATGGCCGATGTGGTGAATGTGAAAGTGTATA
68103740 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGG-CTG
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT-
* *
68103804 AATGGCCAATGTGATGAATGTGAAAGTGTATA
65 AATGGCCGATGTGGTGAATGTGAAAGTGTATA
68103836 -A-ATGTGATAAG
1 TATATGTGATAAG
68103847 TCCCGAAGGG
Statistics
Matches: 755, Mismatches: 13, Indels: 18
0.96 0.02 0.02
Matches are distributed among these distances:
93 2 0.00
94 239 0.32
95 1 0.00
96 470 0.62
98 43 0.06
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (96 bp):
TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTA
ATGGCCGATGTGGTGAATGTGAAAGTGTATA
Found at i:68103232 original size:143 final size:143
Alignment explanation
Indices: 68102974--68103846 Score: 1540
Period size: 143 Copynumber: 6.1 Consensus size: 143
68102964 TACATGATAG
68102974 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATATGTGATAAGG
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATATGTGATAAGG
*
68103039 CCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGAT
64 CCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
*
68103104 GAATGTGAAAGTTTA
129 GAATGTGAAAGTGTA
*
68103119 TATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
*
68103184 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGGTGA
66 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
68103249 ATGTGAAAGTGTATA
131 ATGTGAAAGTG--TA
*
68103264 TATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
*
68103327 TAATGGCCGATGTGGTGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
66 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGAT
68103392 GAATGTGAAAGTGTA
129 GAATGTGAAAGTGTA
*
68103407 TATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
*
68103472 TAATGGCCGATGTGGTGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
66 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
68103537 ATGTGAAAGTGTA
131 ATGTGAAAGTGTA
*
68103550 TATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
*
68103615 TAATGGCCGATGTGGTGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
66 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
68103680 ATGTGAAAGTGTA
131 ATGTGAAAGTGTA
68103693 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
*
68103756 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGG-CTGAATGGCCAATGTGATG
66 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT-AATGGCCGATGTGATG
68103820 AATGTGAAAGTGTA
130 AATGTGAAAGTGTA
*
68103834 TAAATGTGATAAG
1 TATATGTGATAAG
68103847 TCCCGAAGGG
Statistics
Matches: 707, Mismatches: 14, Indels: 18
0.96 0.02 0.02
Matches are distributed among these distances:
140 2 0.00
141 103 0.15
143 420 0.59
145 182 0.26
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (143 bp):
TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
ATGTGAAAGTGTA
Found at i:68114440 original size:28 final size:28
Alignment explanation
Indices: 68114365--68114484 Score: 140
Period size: 28 Copynumber: 4.4 Consensus size: 28
68114355 GATACGAAAT
* *
68114365 TGTGCTAAGTGAAATAAGACCATGGC-A
1 TGTGCTAAGTGAAATAAGTCTATGGCAA
*
68114392 --T-CTAAGTGAAATAAGTATATGGCAA
1 TGTGCTAAGTGAAATAAGTCTATGGCAA
*
68114417 TGTGCTTAGTGAAATAAGTCTATGGCAA
1 TGTGCTAAGTGAAATAAGTCTATGGCAA
* * * *
68114445 TGTGCCAAGTGAAACAAGTCCATGGCAT
1 TGTGCTAAGTGAAATAAGTCTATGGCAA
68114473 TGTGCTAAGTGA
1 TGTGCTAAGTGA
68114485 GAAGTTTCCC
Statistics
Matches: 78, Mismatches: 11, Indels: 7
0.81 0.11 0.07
Matches are distributed among these distances:
24 19 0.24
25 2 0.03
27 1 0.01
28 56 0.72
ACGTcount: A:0.35, C:0.13, G:0.25, T:0.27
Consensus pattern (28 bp):
TGTGCTAAGTGAAATAAGTCTATGGCAA
Found at i:68114613 original size:51 final size:51
Alignment explanation
Indices: 68114508--68114704 Score: 303
Period size: 50 Copynumber: 3.9 Consensus size: 51
68114498 TGAACCTTAG
68114508 GAATAAAATAGCTTTGGACACAAGTGT-GTAC-ATTGTGAAGGCCACTTTGT
1 GAATAAAATAGCTTTGGACACAAGTGTGGTACTA-TGTGAAGGCCACTTTGT
*
68114558 GAATATAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
1 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
* *
68114609 GAATAAAATAGTTTTGGACACAA-TGTGGTACTATGTGAAGGCCACTTTAT
1 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
* *
68114659 GAATAAAATAGCTTT-GCCTACAAGGGTGGTACTATGTGAAGGCCAC
1 GAATAAAATAGCTTTGGAC-ACAAGTGTGGTACTATGTGAAGGCCAC
68114705 CATGTATCCG
Statistics
Matches: 136, Mismatches: 7, Indels: 7
0.91 0.05 0.05
Matches are distributed among these distances:
49 2 0.01
50 70 0.51
51 63 0.46
52 1 0.01
ACGTcount: A:0.32, C:0.14, G:0.24, T:0.29
Consensus pattern (51 bp):
GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
Found at i:68114688 original size:101 final size:101
Alignment explanation
Indices: 68114508--68114704 Score: 301
Period size: 101 Copynumber: 2.0 Consensus size: 101
68114498 TGAACCTTAG
* *
68114508 GAATAAAATAGCTTTGGACACAAGTGTGTACATTGTGAAGGCCACTTTGTGAATATAATAGCTTT
1 GAATAAAATAGCTTTGGACACAAGTGTGTACATTGTGAAGGCCACTTTATGAATAAAATAGCTTT
*
68114573 GGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
66 GGACACAAGGGTGGTACTATGTGAAGGCCACTTTGT
*
68114609 GAATAAAATAGTTTTGGACACAA-TGTGGTAC-TATGTGAAGGCCACTTTATGAATAAAATAGCT
1 GAATAAAATAGCTTTGGACACAAGTGT-GTACAT-TGTGAAGGCCACTTTATGAATAAAATAGCT
*
68114672 TT-GCCTACAAGGGTGGTACTATGTGAAGGCCAC
64 TTGGAC-ACAAGGGTGGTACTATGTGAAGGCCAC
68114705 CATGTATCCG
Statistics
Matches: 88, Mismatches: 5, Indels: 6
0.89 0.05 0.06
Matches are distributed among these distances:
100 6 0.07
101 82 0.93
ACGTcount: A:0.32, C:0.14, G:0.24, T:0.29
Consensus pattern (101 bp):
GAATAAAATAGCTTTGGACACAAGTGTGTACATTGTGAAGGCCACTTTATGAATAAAATAGCTTT
GGACACAAGGGTGGTACTATGTGAAGGCCACTTTGT
Found at i:68118410 original size:48 final size:48
Alignment explanation
Indices: 68118354--68118452 Score: 144
Period size: 48 Copynumber: 2.1 Consensus size: 48
68118344 GAGTATATGT
* * *
68118354 GATACATTGAGTTGGTTTCGGGCCATGATATTGGCACGTCGGGTGCGA
1 GATACATTGAGTTGGCTTCAGGCCATGATATTGGCACGTAGGGTGCGA
* * *
68118402 GATACATTGAGTTGGCTTCAGGCCGTGATATTGGCACTTAGTGTGCGA
1 GATACATTGAGTTGGCTTCAGGCCATGATATTGGCACGTAGGGTGCGA
68118450 GAT
1 GAT
68118453 TCTCGTGTAT
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
48 45 1.00
ACGTcount: A:0.20, C:0.16, G:0.33, T:0.30
Consensus pattern (48 bp):
GATACATTGAGTTGGCTTCAGGCCATGATATTGGCACGTAGGGTGCGA
Found at i:68123603 original size:53 final size:53
Alignment explanation
Indices: 68123425--68123627 Score: 165
Period size: 53 Copynumber: 3.8 Consensus size: 53
68123415 GGGGTTTAAG
* * * * * * *
68123425 GATACCAAGTAAGTCCATGCCAAGGCATGGCATTGGTAAGTTTACAAGG-TAA
1 GATACCACGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGCAAA
* * * * * * * *
68123477 GCAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAACTACGATAAGGCAAA
1 G-ATACCACGTAAGACCATGCCAAGACATGGCAATGGT-AAGTTC-ATAAGGCAAA
* * * * * *
68123533 GATCCCATGTAAGACCATGCCACGGCATGGCAATGGTGAGTTCATAAGGCAAG
1 GATACCACGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGCAAA
* *
68123586 GGTACCACGTAAGACCATGTCAAGACATGGCAATGGTAAGTT
1 GATACCACGTAAGACCATGCCAAGACATGGCAATGGTAAGTT
68123628 TTAAAAGGAA
Statistics
Matches: 116, Mismatches: 31, Indels: 7
0.75 0.20 0.05
Matches are distributed among these distances:
52 1 0.01
53 73 0.63
54 6 0.05
55 33 0.28
56 3 0.03
ACGTcount: A:0.35, C:0.19, G:0.25, T:0.21
Consensus pattern (53 bp):
GATACCACGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGCAAA
Found at i:68133605 original size:23 final size:23
Alignment explanation
Indices: 68133579--68133625 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
68133569 GCCACCAGAG
*
68133579 TTAGAAAAGATTCATTATGTGTT
1 TTAGAAAAGATTCATGATGTGTT
68133602 TTAGAAAAGATTCATGATGTGTT
1 TTAGAAAAGATTCATGATGTGTT
68133625 T
1 T
68133626 CACGTATTGA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.34, C:0.04, G:0.19, T:0.43
Consensus pattern (23 bp):
TTAGAAAAGATTCATGATGTGTT
Found at i:68135613 original size:24 final size:24
Alignment explanation
Indices: 68135580--68135625 Score: 83
Period size: 24 Copynumber: 1.9 Consensus size: 24
68135570 CTTTGTTTGC
68135580 GTTTGCATTGTTTTATAGATATGT
1 GTTTGCATTGTTTTATAGATATGT
*
68135604 GTTTGTATTGTTTTATAGATAT
1 GTTTGCATTGTTTTATAGATAT
68135626 CGAAGCTATT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.22, C:0.02, G:0.20, T:0.57
Consensus pattern (24 bp):
GTTTGCATTGTTTTATAGATATGT
Found at i:68146776 original size:18 final size:18
Alignment explanation
Indices: 68146753--68146789 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
68146743 GCTTGTAAAG
68146753 TTAGAAACGAGCCAAAAA
1 TTAGAAACGAGCCAAAAA
68146771 TTAGAAACGAGCCAAAAA
1 TTAGAAACGAGCCAAAAA
68146789 T
1 T
68146790 CACATACCAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.54, C:0.16, G:0.16, T:0.14
Consensus pattern (18 bp):
TTAGAAACGAGCCAAAAA
Found at i:68147450 original size:79 final size:79
Alignment explanation
Indices: 68147316--68147468 Score: 243
Period size: 79 Copynumber: 1.9 Consensus size: 79
68147306 CTTTTTAAAA
* * * *
68147316 CCATATTTGACTCGTAAATATTAAATAATAATATTTACAAACTTACTTGTTGGATTTATTGCCCC
1 CCATATTTGACTCGTAAATATCAAATAATAATATTTACAAACTTACTTATCGGATTTATGGCCCC
68147381 GAAACCACTATTTC
66 GAAACCACTATTTC
* * *
68147395 CCATATTTGACTTGTAAATATCAAATAATAATATTTACTAACTTACTTATCGGATTTGTGGCCCC
1 CCATATTTGACTCGTAAATATCAAATAATAATATTTACAAACTTACTTATCGGATTTATGGCCCC
68147460 GAAACCACT
66 GAAACCACT
68147469 GTCTTTGACA
Statistics
Matches: 67, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
79 67 1.00
ACGTcount: A:0.34, C:0.20, G:0.10, T:0.37
Consensus pattern (79 bp):
CCATATTTGACTCGTAAATATCAAATAATAATATTTACAAACTTACTTATCGGATTTATGGCCCC
GAAACCACTATTTC
Found at i:68159535 original size:47 final size:47
Alignment explanation
Indices: 68159484--68159823 Score: 437
Period size: 47 Copynumber: 7.1 Consensus size: 47
68159474 TTAGGATTTT
* * *
68159484 ATGTGATGGATGTGAACATGCGTATGTGTGATAAGACCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
**
68159531 ATGTGATGAATGTGAACCCGTATATATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA--C--ATGCATATGTGTGATAAGGCCGAATGGCCA
* *
68159582 ATGTGATGAATGTGAACATGCGTATGAGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
* * *
68159629 CTGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
**
68159676 ATGTGATGAATGTGAACCCGTATATATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA--C--ATGCATATGTGTGATAAGGCCGAATGGCCA
* * *
68159727 ATGTGATGGATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
* * * *
68159774 ATGTGATGAATGTGAACATGAATATATGTGGTAAGGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
68159821 ATG
1 ATG
68159824 CGAAACGTGT
Statistics
Matches: 258, Mismatches: 27, Indels: 16
0.86 0.09 0.05
Matches are distributed among these distances:
47 170 0.66
49 4 0.02
51 84 0.33
ACGTcount: A:0.31, C:0.13, G:0.30, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
Found at i:68159595 original size:98 final size:94
Alignment explanation
Indices: 68159484--68159823 Score: 446
Period size: 98 Copynumber: 3.5 Consensus size: 94
68159474 TTAGGATTTT
* * * *
68159484 ATGTGATGGATGTGAACATGCGTATGTGTGATAAGACCGAATGGCCAATGTGATGAATGTGAACC
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAA--
**
68159549 CGTATATATATGTGTGATAAGGCCGAATGGCCA
64 C--ATGCATATGTGTGATAAGGCCGAATGGCCA
* * *
68159582 ATGTGATGAATGTGAACATGCGTATGAGTGATAAGGCCGAATGGCCACTGTGATGGATGTGAACA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAACA
*
68159647 TGCGTATGTGTGATAAGGCCGAATGGCCA
66 TGCATATGTGTGATAAGGCCGAATGGCCA
**
68159676 ATGTGATGAATGTGAACCCGTATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGGATGTG
1 ATGTGATGAATGTGAA--C--ATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGGATGTG
* *
68159741 AACATGCATATATGAGATAAGGCCGAATGGCCA
62 AACATGCATATGTGTGATAAGGCCGAATGGCCA
* * * *
68159774 ATGTGATGAATGTGAACATGAATATATGTGGTAAGGCCGAATGGCTAATG
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATG
68159824 CGAAACGTGT
Statistics
Matches: 217, Mismatches: 21, Indels: 12
0.87 0.08 0.05
Matches are distributed among these distances:
94 71 0.33
96 3 0.01
98 143 0.66
ACGTcount: A:0.31, C:0.13, G:0.30, T:0.26
Consensus pattern (94 bp):
ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAACA
TGCATATGTGTGATAAGGCCGAATGGCCA
Found at i:68159634 original size:145 final size:145
Alignment explanation
Indices: 68159484--68159823 Score: 565
Period size: 145 Copynumber: 2.3 Consensus size: 145
68159474 TTAGGATTTT
*
68159484 ATGTGATGGATGTGAACATGCGTATGTGTGATAAGACCGAATGGCCAATGTGATGAATGTGAACC
1 ATGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
* *
68159549 CGTATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGA-GTGA
66 CGTATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATAT-ATGAGA
68159613 TAAGGCCGAATGGCCA
130 TAAGGCCGAATGGCCA
*
68159629 CTGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
1 ATGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
*
68159694 CGTATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAACATGCATATATGAGAT
66 CGTATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGAGAT
68159759 AAGGCCGAATGGCCA
131 AAGGCCGAATGGCCA
* ** * * *
68159774 ATGTGATGAATGTGAACATGAATATATGTGGTAAGGCCGAATGGCTAATG
1 ATGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATG
68159824 CGAAACGTGT
Statistics
Matches: 182, Mismatches: 12, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
144 1 0.01
145 181 0.99
ACGTcount: A:0.31, C:0.13, G:0.30, T:0.26
Consensus pattern (145 bp):
ATGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
CGTATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGAGAT
AAGGCCGAATGGCCA
Found at i:68159887 original size:46 final size:46
Alignment explanation
Indices: 68159797--68159887 Score: 110
Period size: 46 Copynumber: 2.0 Consensus size: 46
68159787 GAACATGAAT
* * * **
68159797 ATATGTGGTAAGGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTACAAGATGG
* * *
68159843 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTACAAGATG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTACAAGATG
68159888 TGTATATATA
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
46 37 1.00
ACGTcount: A:0.34, C:0.10, G:0.31, T:0.25
Consensus pattern (46 bp):
ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTACAAGATGG
Found at i:68160178 original size:37 final size:37
Alignment explanation
Indices: 68160034--68160177 Score: 227
Period size: 37 Copynumber: 3.9 Consensus size: 37
68160024 GGAAATATAT
68160034 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
68160071 TCTGGG-AAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
68160107 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* * * *
68160144 TCCGGGTAAGACCTGATAACTTCATGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
68160178 TCGTCTGAGC
Statistics
Matches: 99, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
36 35 0.35
37 64 0.65
ACGTcount: A:0.24, C:0.18, G:0.31, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:68169366 original size:20 final size:20
Alignment explanation
Indices: 68169328--68169366 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
68169318 CCTTAATATA
*
68169328 CCAAAATTTTTATGATGATG
1 CCAAAATTTTAATGATGATG
68169348 CCAATAATTTTAATG-TGAT
1 CCAA-AATTTTAATGATGAT
68169367 ATTAATATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.36, C:0.10, G:0.13, T:0.41
Consensus pattern (20 bp):
CCAAAATTTTAATGATGATG
Found at i:68169526 original size:19 final size:19
Alignment explanation
Indices: 68169462--68169526 Score: 53
Period size: 19 Copynumber: 3.4 Consensus size: 19
68169452 AGGTATTCAA
* **
68169462 TTAAAAA-ATTTGTATTAA
1 TTAAAAATATTTATATTTG
*
68169480 TTAAAAAT-TTTCATATCATG
1 TTAAAAATATTT-ATAT-TTG
*
68169500 TTAGAAATATTTATATTTG
1 TTAAAAATATTTATATTTG
68169519 TTAAAAAT
1 TTAAAAAT
68169527 TTTGGTATTG
Statistics
Matches: 36, Mismatches: 7, Indels: 7
0.72 0.14 0.14
Matches are distributed among these distances:
18 10 0.28
19 12 0.33
20 11 0.31
21 3 0.08
ACGTcount: A:0.45, C:0.03, G:0.06, T:0.46
Consensus pattern (19 bp):
TTAAAAATATTTATATTTG
Found at i:68169615 original size:21 final size:20
Alignment explanation
Indices: 68169589--68169633 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
68169579 GGTATTGTTT
68169589 AAAAAAATTGATAAT-ACATTA
1 AAAAAAATTG-T-ATGACATTA
*
68169610 AAAAAATTTGTATGACATTA
1 AAAAAAATTGTATGACATTA
68169630 AAAA
1 AAAA
68169634 TTTTGGTATA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
19 2 0.09
20 11 0.50
21 9 0.41
ACGTcount: A:0.60, C:0.04, G:0.07, T:0.29
Consensus pattern (20 bp):
AAAAAAATTGTATGACATTA
Found at i:68169632 original size:19 final size:19
Alignment explanation
Indices: 68169587--68169651 Score: 60
Period size: 19 Copynumber: 3.3 Consensus size: 19
68169577 TTGGTATTGT
* *
68169587 TTAAAAAAATTGATAATACA
1 TTAAAAAATTTGGT-ATACA
68169607 TTAAAAAAATTT-GTATGACA
1 TT-AAAAAATTTGGTAT-ACA
* *
68169627 TTAAAAATTTTGGTATAAA
1 TTAAAAAATTTGGTATACA
68169646 TTAAAA
1 TTAAAA
68169652 GTATTGCTTT
Statistics
Matches: 38, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
19 18 0.47
20 12 0.32
21 8 0.21
ACGTcount: A:0.54, C:0.03, G:0.08, T:0.35
Consensus pattern (19 bp):
TTAAAAAATTTGGTATACA
Found at i:68170842 original size:16 final size:17
Alignment explanation
Indices: 68170812--68170847 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
68170802 TTGAACCGAA
*
68170812 ATTTTTGAATTTTTTTT
1 ATTTTTGAATATTTTTT
68170829 ATTTTT-AATATTTTTT
1 ATTTTTGAATATTTTTT
68170845 ATT
1 ATT
68170848 CTAACGGATA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 12 0.67
17 6 0.33
ACGTcount: A:0.22, C:0.00, G:0.03, T:0.75
Consensus pattern (17 bp):
ATTTTTGAATATTTTTT
Found at i:68173580 original size:27 final size:27
Alignment explanation
Indices: 68173537--68173588 Score: 72
Period size: 27 Copynumber: 1.9 Consensus size: 27
68173527 CTCTTTATTT
68173537 ATAAAATAAATTATATCTATTCAATTAA
1 ATAAAATAAATTATATCTA-TCAATTAA
68173565 ATAAAA-AAATCT-TATCTATCAATT
1 ATAAAATAAAT-TATATCTATCAATT
68173589 TTTAAATCCG
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
26 6 0.26
27 10 0.43
28 7 0.30
ACGTcount: A:0.52, C:0.10, G:0.00, T:0.38
Consensus pattern (27 bp):
ATAAAATAAATTATATCTATCAATTAA
Found at i:68173690 original size:18 final size:18
Alignment explanation
Indices: 68173667--68173711 Score: 65
Period size: 18 Copynumber: 2.5 Consensus size: 18
68173657 AAAGAAAATA
68173667 TATTATTGTAAT-AATATT
1 TATTATT-TAATAAATATT
*
68173685 TATTATTTATTAAATATT
1 TATTATTTAATAAATATT
68173703 TATTATTTA
1 TATTATTTA
68173712 TTTTAACAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
17 3 0.12
18 22 0.88
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (18 bp):
TATTATTTAATAAATATT
Found at i:68173712 original size:18 final size:18
Alignment explanation
Indices: 68173679--68173713 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
68173669 TTATTGTAAT
68173679 AATATTTATTATTTATTA
1 AATATTTATTATTTATTA
68173697 AATATTTATTATTTATT
1 AATATTTATTATTTATT
68173714 TTAACAATCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (18 bp):
AATATTTATTATTTATTA
Found at i:68177517 original size:39 final size:39
Alignment explanation
Indices: 68177430--68177612 Score: 276
Period size: 39 Copynumber: 4.7 Consensus size: 39
68177420 GCCACTAGCT
* *
68177430 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTGACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TATAATAACTCGCA
* *
68177470 CAAATGCCTTCAGGACTTAGCCCGGCATAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTATAATAACTCGCA
*
68177509 TAAATGCCTTCGGGACTTAGCCCGGTATAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTATAATAACTCGCA
* *
68177548 TAAATGCCTTCGGGACTTAGCCCAGTATAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTATAATAACTCGCA
* *
68177587 CGAGTGCCTTCGGGACTTAGCCCGGT
1 CAAATGCCTTCGGGACTTAGCCCGGT
68177613 TATCAACCGA
Statistics
Matches: 131, Mismatches: 12, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
39 107 0.82
40 24 0.18
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGGTATAATAACTCGCA
Found at i:68180021 original size:40 final size:40
Alignment explanation
Indices: 68179839--68180061 Score: 236
Period size: 40 Copynumber: 5.6 Consensus size: 40
68179829 TCCTCGTTCA
* * * * *
68179839 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
68179878 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
68179918 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
68179958 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* ** * * * *
68179998 AAGGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
68180038 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
68180062 CAGCATTCAA
Statistics
Matches: 160, Mismatches: 20, Indels: 7
0.86 0.11 0.04
Matches are distributed among these distances:
39 37 0.23
40 115 0.72
41 8 0.05
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:68180070 original size:41 final size:41
Alignment explanation
Indices: 68179993--68180070 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
68179983 TTAGTATCTC
* * *
68179993 GCACAAAGGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
68180034 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAAGGCCTTC-GGATCTTAGCCCGGACA-CATTCA
68180071 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (41 bp):
GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:68187873 original size:40 final size:40
Alignment explanation
Indices: 68187691--68187913 Score: 236
Period size: 40 Copynumber: 5.6 Consensus size: 40
68187681 TCCTCGTTCA
* * * * *
68187691 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
68187730 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
68187770 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
68187810 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* ** * * * *
68187850 AAGGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
68187890 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
68187914 CAGCATTCAA
Statistics
Matches: 160, Mismatches: 20, Indels: 7
0.86 0.11 0.04
Matches are distributed among these distances:
39 37 0.23
40 115 0.72
41 8 0.05
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:68187922 original size:41 final size:41
Alignment explanation
Indices: 68187845--68187922 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
68187835 TTAGTATCTC
* * *
68187845 GCACAAAGGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
68187886 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAAGGCCTTC-GGATCTTAGCCCGGACA-CATTCA
68187923 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (41 bp):
GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:68189815 original size:23 final size:23
Alignment explanation
Indices: 68189782--68189825 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
68189772 AGGATAGACA
*
68189782 CATTTTTTTTCT-TTTGTTTTCAT
1 CATTTTCTTTCTCTTT-TTTTCAT
68189805 CATTTTCTTTCTCTTTTTTTC
1 CATTTTCTTTCTCTTTTTTTC
68189826 CCATTTCTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
23 16 0.84
24 3 0.16
ACGTcount: A:0.07, C:0.18, G:0.02, T:0.73
Consensus pattern (23 bp):
CATTTTCTTTCTCTTTTTTTCAT
Found at i:68190982 original size:46 final size:47
Alignment explanation
Indices: 68190785--68191094 Score: 271
Period size: 46 Copynumber: 6.6 Consensus size: 47
68190775 GGGTTATTGT
* * *
68190785 GAGCTAGTGTAAGA-CATGTCTGGGACATGCATCGGCCAC-ATTATGA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGCATCGGCCTCGA-GATGA
* *
68190831 GAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCATCGAGACT-A
1 GAGCCAGTGTAAGACCATGTCTGGGACAT-GCATCGGCCTCGAGA-TGA
* * * *
68190879 GTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGATGA
1 GAGCCAGTGTAAGACCATGTCTGGGACAT-GCATCGGCCTCGAGATGA
* * * * *
68190927 GTGCTAGTGTAAGA-CATTTCTGGGATATGCATCGGCCTCGAGACGTA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGCATCGGCCTCGAGATG-A
* *
68190974 -AGCCAGTGTAAGA-CATGTCTGGGAAATGCATCGG-CTACAAGATGA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGCATCGGCCT-CGAGATGA
* * * *
68191019 -AGTCAGTGTAAGACCATGTCTGGGGCATGGCATC-GACTTGAGAT-A
1 GAGCCAGTGTAAGACCATGTCTGGGACAT-GCATCGGCCTCGAGATGA
* * *
68191064 TGAGCCAGTGTAAAACTATGTCTGCGACATG
1 -GAGCCAGTGTAAGACCATGTCTGGGACATG
68191095 GCATTGGCAC
Statistics
Matches: 222, Mismatches: 30, Indels: 24
0.80 0.11 0.09
Matches are distributed among these distances:
45 16 0.07
46 80 0.36
47 57 0.26
48 67 0.30
49 2 0.01
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.24
Consensus pattern (47 bp):
GAGCCAGTGTAAGACCATGTCTGGGACATGCATCGGCCTCGAGATGA
Found at i:68192281 original size:21 final size:21
Alignment explanation
Indices: 68192240--68192279 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
68192230 TGTCAAAATG
68192240 TTCACACGGGCGTGTTGCCCT
1 TTCACACGGGCGTGTTGCCCT
68192261 TTCACACGGGCGTG-TGCCC
1 TTCACACGGGCGTGTTGCCC
68192280 CTGTGTTAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 5 0.26
21 14 0.74
ACGTcount: A:0.10, C:0.35, G:0.30, T:0.25
Consensus pattern (21 bp):
TTCACACGGGCGTGTTGCCCT
Found at i:68199548 original size:29 final size:28
Alignment explanation
Indices: 68199512--68199589 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
68199502 TCATGAGATT
68199512 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
*
68199542 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
68199569 TGGCACTAAGTGTGCGCGGTT
1 -GGCACTAAGTGTGCG-GGTT
68199590 GATTATTAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 5 0.12
29 35 0.81
30 3 0.07
ACGTcount: A:0.26, C:0.15, G:0.31, T:0.28
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:68199807 original size:174 final size:174
Alignment explanation
Indices: 68199542--68200042 Score: 923
Period size: 174 Copynumber: 2.9 Consensus size: 174
68199532 AAATTGTACA
*
68199542 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
68199607 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
68199672 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
* * *
68199716 GCACTAAGTGTGTGAGTTTAAAGTGCATGACACTAAGTGTGCGCGGTTGATTATTGAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
68199781 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
68199846 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
*
68199890 ACACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
* * *
68199955 TGTGCGAACTCAATATATA-TTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
68200019 TTTTGGACAGCGGAAAAGGTAAGT
131 TTTTGGACAGCGGAAAAGGTAAGT
68200043 ACCTTGAGTT
Statistics
Matches: 316, Mismatches: 11, Indels: 1
0.96 0.03 0.00
Matches are distributed among these distances:
173 67 0.21
174 249 0.79
ACGTcount: A:0.30, C:0.14, G:0.25, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:68207827 original size:28 final size:28
Alignment explanation
Indices: 68207758--68207828 Score: 108
Period size: 29 Copynumber: 2.5 Consensus size: 28
68207748 CATGAGATTG
*
68207758 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAA-TGTACA
68207787 GCACTAAGTGTGCGAGTTTAAA-GTACA
1 GCACTAAGTGTGCGAGTTTAAATGTACA
68207814 TGCACTAAGTGTGCG
1 -GCACTAAGTGTGCG
68207829 CGTTGATTAT
Statistics
Matches: 40, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
27 5 0.12
28 14 0.35
29 21 0.52
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.28
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTAAATGTACA
Found at i:68208230 original size:166 final size:167
Alignment explanation
Indices: 68207787--68208267 Score: 755
Period size: 165 Copynumber: 2.9 Consensus size: 167
68207777 AAATTGTACA
*
68207787 GCACTAAGTGTGCGAGTTTAAAGTACATGCACTAAGTGTGCGC-GTTGATTATTAAGCACTATGT
1 GCACTAAGTGTGTGAGTTTAAAGTACATGCACTAAGT-TGCGCGGTTGATTATT-AGCACTATGT
*
68207851 GTGCGAACCCAATATATATTTCTATAAATTA-TTACATTAAGGGTGCAAC-TTACCGAGTCGATT
64 GTGCGAACCCAATATATATTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGATT
68207914 TGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
129 TGGACAGCGGAAAAGGTAA--GTGCGAACTTGAAATGCATG
* * *
68207955 GCACTAA--GTGTGAGTTTAAAGTGCATGGCACTAAG-TGTGCGGTTGATTATGAGCACTATGTG
1 GCACTAAGTGTGTGAGTTTAAAGTACAT-GCACTAAGTTGCGCGGTTGATTATTAGCACTATGTG
68208017 TGCGAACCCAATATATA-TTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGATTT
65 TGCGAACCCAATATATATTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGATTT
*
68208081 GGACAGCAG-AAAGGTAAGTGCGAACTTGAAATGCATG
130 GGACAGCGGAAAAGGTAAGTGCGAACTTGAAATGCATG
68208118 GCACTAAGTGTGTGAGTTTAAAGTACATGCACTAAGTTGCGCGGTTGATTATTAGCACTATGTGT
1 GCACTAAGTGTGTGAGTTTAAAGTACATGCACTAAGTTGCGCGGTTGATTATTAGCACTATGTGT
* * *
68208183 GCGAACTCAATATATATTTTCTAT-AATTATTTACATGAAGGGTGCGACTTTACCGAGTCAATTT
66 GCGAACCCAATATATA-TTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA-TT
68208247 TGGACAGCGGAAAAGGTAAGT
129 TGGACAGCGGAAAAGGTAAGT
68208268 ACTTGAGTTC
Statistics
Matches: 289, Mismatches: 13, Indels: 22
0.89 0.04 0.07
Matches are distributed among these distances:
163 27 0.09
164 20 0.07
165 116 0.40
166 84 0.29
167 25 0.09
168 17 0.06
ACGTcount: A:0.31, C:0.15, G:0.24, T:0.30
Consensus pattern (167 bp):
GCACTAAGTGTGTGAGTTTAAAGTACATGCACTAAGTTGCGCGGTTGATTATTAGCACTATGTGT
GCGAACCCAATATATATTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGATTTG
GACAGCGGAAAAGGTAAGTGCGAACTTGAAATGCATG
Found at i:68461644 original size:15 final size:15
Alignment explanation
Indices: 68461624--68461665 Score: 66
Period size: 15 Copynumber: 2.8 Consensus size: 15
68461614 GTTGTAAATG
68461624 GGATTTCCTTATCAT
1 GGATTTCCTTATCAT
* *
68461639 GGATTTCTTTATCTT
1 GGATTTCCTTATCAT
68461654 GGATTTCCTTAT
1 GGATTTCCTTAT
68461666 TCTCGGCTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.17, C:0.17, G:0.14, T:0.52
Consensus pattern (15 bp):
GGATTTCCTTATCAT
Found at i:68464536 original size:47 final size:47
Alignment explanation
Indices: 68464418--68464622 Score: 230
Period size: 47 Copynumber: 4.5 Consensus size: 47
68464408 ATACGTGTAA
* * * *
68464418 GTGGTGCTAAGTTGATATACCACGATTACACATATTGATACATGTAAC
1 GTGGTGCTAAGTGGATATACCACGGTTACATATATTGATTCAT-TAAC
* *
68464466 GTGGTGCTATGTGGATATGCCACGGTTACATATATTGATTCATTAAC
1 GTGGTGCTAAGTGGATATACCACGGTTACATATATTGATTCATTAAC
*
68464513 GTGGTGCTAAGTGGATATACCACGGTTA-A-ACA-TG------TAAC
1 GTGGTGCTAAGTGGATATACCACGGTTACATATATTGATTCATTAAC
* * *
68464551 GTGGTGCTAAGTGGATATGCCACGTTTACATATATCGATTCATTAAC
1 GTGGTGCTAAGTGGATATACCACGGTTACATATATTGATTCATTAAC
* *
68464598 GTGGTGCTAAATGGACATACCACGG
1 GTGGTGCTAAGTGGATATACCACGG
68464623 GTAAACATGT
Statistics
Matches: 131, Mismatches: 17, Indels: 19
0.78 0.10 0.11
Matches are distributed among these distances:
38 30 0.23
39 1 0.01
40 2 0.02
41 1 0.01
44 2 0.02
45 2 0.02
46 1 0.01
47 55 0.42
48 37 0.28
ACGTcount: A:0.29, C:0.17, G:0.23, T:0.31
Consensus pattern (47 bp):
GTGGTGCTAAGTGGATATACCACGGTTACATATATTGATTCATTAAC
Found at i:68464546 original size:85 final size:85
Alignment explanation
Indices: 68464457--68464663 Score: 360
Period size: 85 Copynumber: 2.4 Consensus size: 85
68464447 ACATATTGAT
* *
68464457 ACATGTAACGTGGTGCTATGTGGATATGCCACGGTTACATATATTGATTCATTAACGTGGTGCTA
1 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATCGATTCATTAACGTGGTGCTA
* * *
68464522 AGTGGATATACCACGGTTAA
66 AATGGACATACCACGGGTAA
*
68464542 ACATGTAACGTGGTGCTAAGTGGATATGCCACGTTTACATATATCGATTCATTAACGTGGTGCTA
1 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATCGATTCATTAACGTGGTGCTA
68464607 AATGGACATACCACGGGTAA
66 AATGGACATACCACGGGTAA
68464627 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTA
1 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTA
68464664 TACATGTTAA
Statistics
Matches: 115, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
85 115 1.00
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.29
Consensus pattern (85 bp):
ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATCGATTCATTAACGTGGTGCTA
AATGGACATACCACGGGTAA
Found at i:68464560 original size:38 final size:38
Alignment explanation
Indices: 68464509--68464670 Score: 171
Period size: 38 Copynumber: 4.0 Consensus size: 38
68464499 ATTGATTCAT
68464509 TAACGTGGTGCTAAGTGGATATACCACGGTTAAACATG
1 TAACGTGGTGCTAAGTGGATATACCACGGTTAAACATG
* * *
68464547 TAACGTGGTGCTAAGTGGATATGCCACGTTTACATATATCGATTCAT
1 TAACGTGGTGCTAAGTGGATATACCACGGTT--A-A-A-C-A-T--G
* * *
68464594 TAACGTGGTGCTAAATGGACATACCACGGGTAAACATG
1 TAACGTGGTGCTAAGTGGATATACCACGGTTAAACATG
* *
68464632 TAACGTGGTGCTAAGTGGATATGCCACGGTTATACATG
1 TAACGTGGTGCTAAGTGGATATACCACGGTTAAACATG
68464670 T
1 T
68464671 TAATTTGAAA
Statistics
Matches: 101, Mismatches: 14, Indels: 18
0.76 0.11 0.14
Matches are distributed among these distances:
38 63 0.62
40 2 0.02
41 2 0.02
42 2 0.02
43 2 0.02
44 2 0.02
45 2 0.02
47 26 0.26
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (38 bp):
TAACGTGGTGCTAAGTGGATATACCACGGTTAAACATG
Found at i:68464621 original size:132 final size:132
Alignment explanation
Indices: 68464378--68464622 Score: 357
Period size: 132 Copynumber: 1.9 Consensus size: 132
68464368 GGAATGAAAA
* * *
68464378 AACGTGGTGCTAAGCGGATATACCACGGTTATACGTGTAAGTGGTGCTAAGTTGATATACCACGA
1 AACGTGGTGCTAAGCGGATATACCACGGTTAAACATGTAAGTGGTGCTAAGTGGATATACCACGA
* ** * *
68464443 TTACACATATTGATACATGTAACGTGGTGCTATGTGGATATGCCACGGTTACATATATTGATTCA
66 TTACACATATCGATACATGTAACGTGGTGCTAAATGGACATACCACGGTTACATATATTGATTCA
68464508 TT
131 TT
* *
68464510 AACGTGGTGCTAAGTGGATATACCACGGTTAAACATGTAACGTGGTGCTAAGTGGATATGCCACG
1 AACGTGGTGCTAAGCGGATATACCACGGTTAAACATGTAA-GTGGTGCTAAGTGGATATACCACG
* * *
68464575 TTTACATATATCGATTCAT-TAACGTGGTGCTAAATGGACATACCACGG
65 ATTACACATATCGATACATGTAACGTGGTGCTAAATGGACATACCACGG
68464623 GTAAACATGT
Statistics
Matches: 99, Mismatches: 13, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
132 62 0.63
133 37 0.37
ACGTcount: A:0.29, C:0.17, G:0.24, T:0.30
Consensus pattern (132 bp):
AACGTGGTGCTAAGCGGATATACCACGGTTAAACATGTAAGTGGTGCTAAGTGGATATACCACGA
TTACACATATCGATACATGTAACGTGGTGCTAAATGGACATACCACGGTTACATATATTGATTCA
TT
Found at i:68471008 original size:44 final size:44
Alignment explanation
Indices: 68470958--68471058 Score: 184
Period size: 44 Copynumber: 2.3 Consensus size: 44
68470948 AACGATCTCT
*
68470958 CACACTTAGTGCCATCACATTAAACTGTATCTATCTCGGTATCG
1 CACACTTAGTGCCATCACATTAAACTGTATCTATCTCAGTATCG
*
68471002 CACACTTAGTGCCATCACATTAAACTGTATCTATCTTAGTATCG
1 CACACTTAGTGCCATCACATTAAACTGTATCTATCTCAGTATCG
68471046 CACACTTAGTGCC
1 CACACTTAGTGCC
68471059 TCATATAGCC
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
44 55 1.00
ACGTcount: A:0.28, C:0.28, G:0.13, T:0.32
Consensus pattern (44 bp):
CACACTTAGTGCCATCACATTAAACTGTATCTATCTCAGTATCG
Found at i:68471106 original size:40 final size:40
Alignment explanation
Indices: 68471062--68471137 Score: 91
Period size: 40 Copynumber: 1.9 Consensus size: 40
68471052 TAGTGCCTCA
*
68471062 TATAGCCAAAGCTATTCT-AATTCGCACACTAAGTGCTATT
1 TATAGCCAAAGCTATTCTGAA-ACGCACACTAAGTGCTATT
*** *
68471102 TATAGTTGAAGCTATTTTGAAACGCACACTAAGTGC
1 TATAGCCAAAGCTATTCTGAAACGCACACTAAGTGC
68471138 CAAACATAGT
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
40 28 0.93
41 2 0.07
ACGTcount: A:0.33, C:0.20, G:0.16, T:0.32
Consensus pattern (40 bp):
TATAGCCAAAGCTATTCTGAAACGCACACTAAGTGCTATT
Found at i:68471731 original size:20 final size:21
Alignment explanation
Indices: 68471688--68471732 Score: 56
Period size: 20 Copynumber: 2.1 Consensus size: 21
68471678 AAGCTCAAGC
68471688 ATTCATCAATGAAAACTCACAA
1 ATTCATCAA-GAAAACTCACAA
* *
68471710 ATTCATCAA-AAAATTCAGAA
1 ATTCATCAAGAAAACTCACAA
68471730 ATT
1 ATT
68471733 AGGGTACATG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 12 0.57
22 9 0.43
ACGTcount: A:0.51, C:0.18, G:0.04, T:0.27
Consensus pattern (21 bp):
ATTCATCAAGAAAACTCACAA
Found at i:68503039 original size:7 final size:7
Alignment explanation
Indices: 68503029--68503054 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
68503019 ATAATGCCCA
68503029 ATAAATG
1 ATAAATG
68503036 ATAAATG
1 ATAAATG
68503043 ATAAATG
1 ATAAATG
68503050 ATAAA
1 ATAAA
68503055 AATGGCTTGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.62, C:0.00, G:0.12, T:0.27
Consensus pattern (7 bp):
ATAAATG
Found at i:68510872 original size:79 final size:81
Alignment explanation
Indices: 68510736--68510920 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
68510726 TTGAATGATG
*
68510736 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
68510800 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
68510815 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
68510877 ATTGTGCGAGTTACTATA
64 ATTGTGCGAGATACTATA
* *
68510895 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
68510921 AACGAGTAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.63
80 33 0.36
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
TGTGCGAGATACTATA
Found at i:68510927 original size:40 final size:40
Alignment explanation
Indices: 68510736--68510920 Score: 216
Period size: 40 Copynumber: 4.7 Consensus size: 40
68510726 TTGAATGATG
* * * *
68510736 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * * *
68510776 TCCGGACTAAGAT-CCGAAGGCAATTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
68510816 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
68510855 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
68510896 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
68510921 AACGAGTAGC
Statistics
Matches: 123, Mismatches: 17, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
39 34 0.28
40 80 0.65
41 9 0.07
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:68510942 original size:79 final size:79
Alignment explanation
Indices: 68510789--68510953 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
68510779 GGACTAAGAT
* **
68510789 CCGAAGGCAATTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
68510854 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
68510868 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
68510931 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
68510947 CCGAAGG
1 CCGAAGG
68510954 TACGTGATTT
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.64
80 25 0.33
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.24
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:68527071 original size:25 final size:25
Alignment explanation
Indices: 68527043--68527090 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
68527033 TTATAGTATG
* * *
68527043 AAAATGACTATTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
68527068 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
68527091 GTTTAATTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.35, C:0.23, G:0.15, T:0.27
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:68527152 original size:11 final size:11
Alignment explanation
Indices: 68527138--68527193 Score: 66
Period size: 11 Copynumber: 5.5 Consensus size: 11
68527128 CAATATTGAT
68527138 ATGATATGCAC
1 ATGATATGCAC
*
68527149 ATGATATGTAC
1 ATGATATGCAC
68527160 --GATATGCAC
1 ATGATATGCAC
*
68527169 ATGATATG--T
1 ATGATATGCAC
68527178 ATGATATGCAC
1 ATGATATGCAC
68527189 ATGAT
1 ATGAT
68527194 GTATTCATAA
Statistics
Matches: 37, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
9 16 0.43
11 21 0.57
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:68527165 original size:20 final size:20
Alignment explanation
Indices: 68527140--68527193 Score: 99
Period size: 20 Copynumber: 2.7 Consensus size: 20
68527130 ATATTGATAT
68527140 GATATGCACATGATATGTAC
1 GATATGCACATGATATGTAC
*
68527160 GATATGCACATGATATGTAT
1 GATATGCACATGATATGTAC
68527180 GATATGCACATGAT
1 GATATGCACATGAT
68527194 GTATTCATAA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.35, C:0.13, G:0.20, T:0.31
Consensus pattern (20 bp):
GATATGCACATGATATGTAC
Found at i:68527282 original size:26 final size:26
Alignment explanation
Indices: 68527243--68527315 Score: 128
Period size: 26 Copynumber: 2.8 Consensus size: 26
68527233 GATGAAGTGT
68527243 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
* *
68527269 AAAGGGGTTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
68527295 AAAAGGGCTTATGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
68527316 ATTAAAAGAG
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 43 1.00
ACGTcount: A:0.26, C:0.25, G:0.25, T:0.25
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTACCG
Found at i:68527578 original size:32 final size:32
Alignment explanation
Indices: 68527537--68527601 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 32
68527527 CATTTATAGT
68527537 AAAGGCTTCGGCCCAATAATATGAAATATGAA
1 AAAGGCTTCGGCCCAATAATATGAAATATGAA
** *
68527569 AAAGGCTTCGGCCCAATGTTATGCAATATGAA
1 AAAGGCTTCGGCCCAATAATATGAAATATGAA
68527601 A
1 A
68527602 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.40, C:0.17, G:0.20, T:0.23
Consensus pattern (32 bp):
AAAGGCTTCGGCCCAATAATATGAAATATGAA
Found at i:68535244 original size:11 final size:11
Alignment explanation
Indices: 68535230--68535285 Score: 66
Period size: 11 Copynumber: 5.5 Consensus size: 11
68535220 CAATATTGAT
68535230 ATGATATGCAC
1 ATGATATGCAC
*
68535241 ATGATATGTAC
1 ATGATATGCAC
68535252 --GATATGCAC
1 ATGATATGCAC
*
68535261 ATGATATG--T
1 ATGATATGCAC
68535270 ATGATATGCAC
1 ATGATATGCAC
68535281 ATGAT
1 ATGAT
68535286 GTATTCATAA
Statistics
Matches: 37, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
9 16 0.43
11 21 0.57
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:68535257 original size:20 final size:20
Alignment explanation
Indices: 68535232--68535285 Score: 99
Period size: 20 Copynumber: 2.7 Consensus size: 20
68535222 ATATTGATAT
68535232 GATATGCACATGATATGTAC
1 GATATGCACATGATATGTAC
*
68535252 GATATGCACATGATATGTAT
1 GATATGCACATGATATGTAC
68535272 GATATGCACATGAT
1 GATATGCACATGAT
68535286 GTATTCATAA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.35, C:0.13, G:0.20, T:0.31
Consensus pattern (20 bp):
GATATGCACATGATATGTAC
Found at i:68535374 original size:26 final size:26
Alignment explanation
Indices: 68535335--68535407 Score: 128
Period size: 26 Copynumber: 2.8 Consensus size: 26
68535325 GATGAAGTGT
68535335 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
* *
68535361 AAAGGGGTTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
68535387 AAAAGGGCTTATGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
68535408 ATTAAAAGAG
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 43 1.00
ACGTcount: A:0.26, C:0.25, G:0.25, T:0.25
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTACCG
Found at i:68535664 original size:31 final size:33
Alignment explanation
Indices: 68535629--68535712 Score: 109
Period size: 38 Copynumber: 2.5 Consensus size: 33
68535619 CATTTATAGT
68535629 AAAGGCTTCGGCCCA-AT-AATATGAAATATGA
1 AAAGGCTTCGGCCCATATCAATATGAAATATGA
68535660 AAAGGCTTCGGCCCAATGTTATGCAATATGAAATATGA
1 AAAGGCTTCGGCCC-A---TAT-CAATATGAAATATGA
68535698 AAAGGCTTCGGCCCA
1 AAAGGCTTCGGCCCA
68535713 GTATATGTTG
Statistics
Matches: 46, Mismatches: 0, Indels: 8
0.85 0.00 0.15
Matches are distributed among these distances:
31 14 0.30
32 1 0.02
36 2 0.04
37 1 0.02
38 28 0.61
ACGTcount: A:0.37, C:0.19, G:0.21, T:0.23
Consensus pattern (33 bp):
AAAGGCTTCGGCCCATATCAATATGAAATATGA
Found at i:68543248 original size:25 final size:25
Alignment explanation
Indices: 68543220--68543267 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
68543210 TTATAGTATG
* * *
68543220 AAAATGACTATTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
68543245 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
68543268 GTTTAATTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.35, C:0.23, G:0.15, T:0.27
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:68543709 original size:32 final size:32
Alignment explanation
Indices: 68543668--68543732 Score: 85
Period size: 32 Copynumber: 2.0 Consensus size: 32
68543658 CGTTTACAGT
68543668 AAAGGCTTCGACCCAGTAATATGAAATATGAA
1 AAAGGCTTCGACCCAGTAATATGAAATATGAA
** ** *
68543700 AAAGGCTTCGGTCCAGTGTTATGCAATATGAA
1 AAAGGCTTCGACCCAGTAATATGAAATATGAA
68543732 A
1 A
68543733 TATGAAAAAG
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.38, C:0.15, G:0.22, T:0.25
Consensus pattern (32 bp):
AAAGGCTTCGACCCAGTAATATGAAATATGAA
Found at i:68543985 original size:13 final size:13
Alignment explanation
Indices: 68543967--68543992 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
68543957 TTCTTTAAGT
68543967 TTATTTATTTTTG
1 TTATTTATTTTTG
68543980 TTATTTATTTTTG
1 TTATTTATTTTTG
68543993 GGTTGTAATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.00, G:0.08, T:0.77
Consensus pattern (13 bp):
TTATTTATTTTTG
Found at i:68545461 original size:46 final size:46
Alignment explanation
Indices: 68545394--68545562 Score: 193
Period size: 46 Copynumber: 3.7 Consensus size: 46
68545384 AACCCGCCCC
* *
68545394 TAAGTGAACTCAGACTCAACTCAACGAGCTCGGCCGTTCACATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGCCGTTCACATCCA
*
68545440 TAAGTGAACTCGGACTCAACTCAACGAGTTCAGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTC-G--GCC--GTTCACATCCA
* * * * *
68545488 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGCCGTTCACATCCA
68545533 TAAGTGAACTCGGACTCAACTCAACGAGTT
1 TAAGTGAACTCGGACTCAACTCAACGAGTT
68545563 TGGATGCTCA
Statistics
Matches: 103, Mismatches: 11, Indels: 18
0.78 0.08 0.14
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 2 0.02
46 55 0.53
47 27 0.26
48 2 0.02
49 3 0.03
50 4 0.04
51 3 0.03
ACGTcount: A:0.31, C:0.28, G:0.18, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGCCGTTCACATCCA
Found at i:68546020 original size:30 final size:30
Alignment explanation
Indices: 68545986--68546045 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
68545976 ATTTAATACG
68545986 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
68546016 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
68546046 GGCTCAGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:68571713 original size:18 final size:19
Alignment explanation
Indices: 68571690--68571727 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 19
68571680 AGCGTTTAAT
68571690 GTGTTT-TGTGTTTAATAA
1 GTGTTTATGTGTTTAATAA
68571708 GTGTTTAAATGTGTTTAATA
1 GTGTTT--ATGTGTTTAATA
68571728 TGTTTGCTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
18 6 0.35
21 11 0.65
ACGTcount: A:0.26, C:0.00, G:0.21, T:0.53
Consensus pattern (19 bp):
GTGTTTATGTGTTTAATAA
Found at i:68571722 original size:21 final size:22
Alignment explanation
Indices: 68571696--68571749 Score: 67
Period size: 23 Copynumber: 2.5 Consensus size: 22
68571686 TAATGTGTTT
68571696 TGTGTTTAATAAG-TG-TTTAAA
1 TGTGTTTAATAAGTTGCTTT-AA
*
68571717 TGTGTTTAATATGTTTGCTTTAA
1 TGTGTTTAATAAG-TTGCTTTAA
68571740 TGTGTTTAAT
1 TGTGTTTAAT
68571750 TGCAGGTGTC
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
21 12 0.41
23 14 0.48
24 3 0.10
ACGTcount: A:0.26, C:0.02, G:0.19, T:0.54
Consensus pattern (22 bp):
TGTGTTTAATAAGTTGCTTTAA
Found at i:68571730 original size:11 final size:11
Alignment explanation
Indices: 68571696--68571730 Score: 54
Period size: 11 Copynumber: 3.3 Consensus size: 11
68571686 TAATGTGTTT
68571696 TGTGTTTAATA
1 TGTGTTTAATA
*
68571707 AGTGTTTAA-A
1 TGTGTTTAATA
68571717 TGTGTTTAATA
1 TGTGTTTAATA
68571728 TGT
1 TGT
68571731 TTGCTTTAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
10 9 0.43
11 12 0.57
ACGTcount: A:0.29, C:0.00, G:0.20, T:0.51
Consensus pattern (11 bp):
TGTGTTTAATA
Found at i:68571749 original size:9 final size:9
Alignment explanation
Indices: 68571683--68571732 Score: 50
Period size: 9 Copynumber: 5.4 Consensus size: 9
68571673 TAAGTTAAGC
68571683 GTTTAATGT
1 GTTTAATGT
68571692 GTTT--TGT
1 GTTTAATGT
68571699 GTTTAATAAGT
1 GTTTAAT--GT
68571710 GTTTAAATGT
1 GTTT-AATGT
*
68571720 GTTTAATAT
1 GTTTAATGT
68571729 GTTT
1 GTTT
68571733 GCTTTAATGT
Statistics
Matches: 35, Mismatches: 1, Indels: 10
0.76 0.02 0.22
Matches are distributed among these distances:
7 7 0.20
9 13 0.37
10 6 0.17
11 6 0.17
12 3 0.09
ACGTcount: A:0.24, C:0.00, G:0.20, T:0.56
Consensus pattern (9 bp):
GTTTAATGT
Found at i:68575828 original size:40 final size:40
Alignment explanation
Indices: 68575770--68576080 Score: 471
Period size: 40 Copynumber: 7.8 Consensus size: 40
68575760 ATTTGAATTT
68575770 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATA
* * * *
68575810 TATCCGGGCTAAGTCCCGAAGGCAATTGTGCTAG-TGATTT
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-TA
68575850 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATA
*
68575890 TATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATA
*
68575930 TATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATA
* *
68575970 TATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATA
* * *
68576010 TATCCGGGCTAAGACCCGAAGGCATTCGTTCGAGTTGCTA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATA
** * *
68576050 TGCCCGGGTTAAGACCCGAAGGCAATTGTGC
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
68576081 TTGTGGTAAT
Statistics
Matches: 246, Mismatches: 23, Indels: 4
0.90 0.08 0.01
Matches are distributed among these distances:
39 3 0.01
40 240 0.98
41 3 0.01
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATA
Found at i:68584463 original size:40 final size:40
Alignment explanation
Indices: 68584405--68584756 Score: 501
Period size: 40 Copynumber: 8.8 Consensus size: 40
68584395 ATTTGGATTT
*
68584405 TATCCGGGCAAAGACCCGAAGGCATTTGTGCGAGTTGATA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATA
* * * *
68584445 TATCCGGGCTAAGTCCCGAAGGCAATTGTGCTAG-TGATTT
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-TA
68584485 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATA
*
68584525 TATCCGGGCTAAGA-CCGCAGGCATTTGTGCGAGTTGATA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATA
*
68584564 TATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATA
*
68584604 TATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATATA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG--ATA
* *
68584646 TATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATA
* * * *
68584686 TCTCCGGGCTAAGACCCGAATGCATTCGTGCGAGTTGCTA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATA
** * *
68584726 TGCCCGGGTTAAGACCCGAAGGCAATTGTGC
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
68584757 TTGTGGTAAT
Statistics
Matches: 282, Mismatches: 25, Indels: 10
0.89 0.08 0.03
Matches are distributed among these distances:
39 41 0.15
40 201 0.71
41 3 0.01
42 37 0.13
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATA
Found at i:68584635 original size:119 final size:121
Alignment explanation
Indices: 68584405--68584756 Score: 503
Period size: 119 Copynumber: 2.9 Consensus size: 121
68584395 ATTTGGATTT
* * *
68584405 TATCCGGGCAAAGACCCGAAGGCATTTGTGCGAGTTGATATATCCGGGCTAAGTCCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCAT
* *
68584470 TTGTGCTAG-TGATTTTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-ATA
66 TTGTGCGAGTTGA-TATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAATA
* *
68584525 TATCCGGGCTAAGA-CCGCAGGCATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGCAGGCAT
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCAT
*
68584589 TTGTGCGAGTTGATATATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATATA
66 TTGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-ATA
* * * *
68584646 TATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATATCTCCGGGCTAAGACCCGAATGCAT
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCAT
* * ** * *
68584711 TCGTGCGAGTTGCTATGCCCGGGTTAAGACCCGAAGGCAATTGTGC
66 TTGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGC
68584757 TTGTGGTAAT
Statistics
Matches: 207, Mismatches: 21, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
119 91 0.44
120 16 0.08
121 17 0.08
122 83 0.40
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (121 bp):
TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCAT
TTGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAATA
Found at i:68590134 original size:28 final size:28
Alignment explanation
Indices: 68590089--68590157 Score: 77
Period size: 28 Copynumber: 2.5 Consensus size: 28
68590079 TATGAGATTG
* * *
68590089 GCACTAAGTGTACGAGTTTAATT-GTATA
1 GCACTAAGTGTGCAAGTTTAATTATTA-A
*
68590117 GCACTAAGTGTGCAAGTTTGATTATTAA
1 GCACTAAGTGTGCAAGTTTAATTATTAA
*
68590145 GCACTAAGCGTGC
1 GCACTAAGTGTGC
68590158 GAACTTACTA
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
28 33 0.94
29 2 0.06
ACGTcount: A:0.30, C:0.14, G:0.23, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCAAGTTTAATTATTAA
Found at i:68591934 original size:28 final size:28
Alignment explanation
Indices: 68591883--68591949 Score: 100
Period size: 28 Copynumber: 2.4 Consensus size: 28
68591873 GTAAGTTTGT
*
68591883 ACACTTAGTGCTTAATAATCAAACTCGC
1 ACACTTAGTGCTTAACAATCAAACTCGC
*
68591911 ACACTTAGTGC-TATACAATTAAACTCGC
1 ACACTTAGTGCTTA-ACAATCAAACTCGC
68591939 ACACTTAGTGC
1 ACACTTAGTGC
68591950 CAATCTCATA
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
27 2 0.06
28 34 0.94
ACGTcount: A:0.34, C:0.25, G:0.12, T:0.28
Consensus pattern (28 bp):
ACACTTAGTGCTTAACAATCAAACTCGC
Found at i:68596560 original size:40 final size:40
Alignment explanation
Indices: 68596505--68596728 Score: 297
Period size: 40 Copynumber: 5.5 Consensus size: 40
68596495 TATTCGGATG
68596505 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
68596545 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-A--AGTTACT
* * *
68596588 ATACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
** * *
68596628 ATATCCGGGCTAAGTCCCGAAGGCATTCATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * * *
68596668 GTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
68596708 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
68596729 ATACTTGGGT
Statistics
Matches: 163, Mismatches: 18, Indels: 7
0.87 0.10 0.04
Matches are distributed among these distances:
39 13 0.08
40 112 0.69
41 1 0.01
43 37 0.23
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Found at i:68596648 original size:83 final size:80
Alignment explanation
Indices: 68596509--68596728 Score: 293
Period size: 83 Copynumber: 2.7 Consensus size: 80
68596499 CGGATGATAT
* **
68596509 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
68596574 TGCGAGTAGTTG-CTATAC
66 TGC---TAG-TGACTATAC
*
68596592 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
* *
68596657 TGCTAGTGACTGTAT
66 TGCTAGTGACTATAC
* * *
68596672 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATATCC-GGCTAAATCCCGAAG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAG-TGACTATATCCGGGCTAAGTCCCGAAG
68596729 ATACTTGGGT
Statistics
Matches: 126, Mismatches: 9, Indels: 8
0.88 0.06 0.06
Matches are distributed among these distances:
79 16 0.13
80 44 0.35
81 2 0.02
83 64 0.51
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
TGCTAGTGACTATAC
Found at i:68605597 original size:42 final size:42
Alignment explanation
Indices: 68605441--68605602 Score: 164
Period size: 42 Copynumber: 3.8 Consensus size: 42
68605431 TATCGTACCA
** * * *
68605441 ATGCCATATCCTTGATATGGTCTTACATGT-GATCTCGTATCG
1 ATGCCATATCCCAGATATGGTCTTACACGTAG-TCTCATATTG
* * * * * * *
68605483 ATACCAATAGCCCAGCTATGGTCTTACATGAAGTATCATATTA
1 ATGCC-ATATCCCAGATATGGTCTTACACGTAGTCTCATATTG
*
68605526 ATGGCATATCCCAGATATGGTCTTACACGTAGTCTCATATTG
1 ATGCCATATCCCAGATATGGTCTTACACGTAGTCTCATATTG
* *
68605568 ATGCCATATCCTAGATATGGTCTTACACGTGGTCT
1 ATGCCATATCCCAGATATGGTCTTACACGTAGTCT
68605603 TAGTAACCCT
Statistics
Matches: 97, Mismatches: 21, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
42 67 0.69
43 29 0.30
44 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.18, T:0.34
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACGTAGTCTCATATTG
Found at i:68611041 original size:37 final size:37
Alignment explanation
Indices: 68611000--68611079 Score: 151
Period size: 37 Copynumber: 2.2 Consensus size: 37
68610990 TACCATTATG
*
68611000 AATGAAATGATATTTTATGGATTTGGTGAATAATAGT
1 AATGAAATGATATTGTATGGATTTGGTGAATAATAGT
68611037 AATGAAATGATATTGTATGGATTTGGTGAATAATAGT
1 AATGAAATGATATTGTATGGATTTGGTGAATAATAGT
68611074 AATGAA
1 AATGAA
68611080 TGAGTAAATT
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 42 1.00
ACGTcount: A:0.40, C:0.00, G:0.23, T:0.38
Consensus pattern (37 bp):
AATGAAATGATATTGTATGGATTTGGTGAATAATAGT
Found at i:68613183 original size:72 final size:71
Alignment explanation
Indices: 68613067--68613210 Score: 243
Period size: 72 Copynumber: 2.0 Consensus size: 71
68613057 TGCTAGGCCA
*
68613067 TGTGAAAACCCTTGTAGGTTCGAAATAAGAAATAAATTCAATTAATTCTACACAGGTTAGGGACA
1 TGTGAAAACCCATGTAGGTTCGAAATAAGAAATAAATTCAATTAATTCTACACAGGTTAGGGACA
68613132 CAGGCG
66 CAGGCG
* *
68613138 TGTGAAAAACCCATGTAGGTTCGAAATAAGAAATAAATTCAATTAATTCTCCACGGGTTAGGGAC
1 TGTG-AAAACCCATGTAGGTTCGAAATAAGAAATAAATTCAATTAATTCTACACAGGTTAGGGAC
*
68613203 ACGGGCG
65 ACAGGCG
68613210 T
1 T
68613211 ATCCCAAAGC
Statistics
Matches: 68, Mismatches: 4, Indels: 1
0.93 0.05 0.01
Matches are distributed among these distances:
71 4 0.06
72 64 0.94
ACGTcount: A:0.37, C:0.16, G:0.22, T:0.25
Consensus pattern (71 bp):
TGTGAAAACCCATGTAGGTTCGAAATAAGAAATAAATTCAATTAATTCTACACAGGTTAGGGACA
CAGGCG
Found at i:68613873 original size:14 final size:14
Alignment explanation
Indices: 68613851--68613880 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
68613841 AAAAAATGAT
*
68613851 CCGATTGAACCGAA
1 CCGAGTGAACCGAA
68613865 CCGAGTGAACCGAA
1 CCGAGTGAACCGAA
68613879 CC
1 CC
68613881 AGCCAAGGAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.33, C:0.33, G:0.23, T:0.10
Consensus pattern (14 bp):
CCGAGTGAACCGAA
Found at i:68619316 original size:24 final size:24
Alignment explanation
Indices: 68619280--68619327 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
68619270 TGTCACCTTA
*
68619280 TAGGTTGGTCTTTGGGAAAGCCTG
1 TAGGTTGGCCTTTGGGAAAGCCTG
68619304 TAGGTTGGCCTTTGGGAAAGCCTG
1 TAGGTTGGCCTTTGGGAAAGCCTG
68619328 CCATCTACCC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.17, C:0.15, G:0.38, T:0.31
Consensus pattern (24 bp):
TAGGTTGGCCTTTGGGAAAGCCTG
Found at i:68625202 original size:40 final size:40
Alignment explanation
Indices: 68625156--68625340 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 40
68625146 CTTGTACAAG
* * *
68625156 GCCTTCGGGTCTTAGCCCGCATGTGGTCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGCATATAGTCACTAGCACAAAT
* * *
68625196 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGCATATAGTCACTAGCACAAAT
* *
68625236 GCCTTCGGGTCTTAGCCCGGATATAG-CAACTCA-CACGAAT
1 GCCTTCGGGTCTTAGCCCGCATATAGTC-ACT-AGCACAAAT
* * *
68625276 GCCTTCGGATCTTAGTCCG-ATTATAGTCACCTAGCACAAAA
1 GCCTTCGGGTCTTAGCCCGCA-TATAGTCA-CTAGCACAAAT
* *
68625317 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGCATAT
68625341 CATTCGAATA
Statistics
Matches: 122, Mismatches: 16, Indels: 13
0.81 0.11 0.09
Matches are distributed among these distances:
39 2 0.02
40 91 0.75
41 28 0.23
42 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGCATATAGTCACTAGCACAAAT
Found at i:68637190 original size:40 final size:40
Alignment explanation
Indices: 68637142--68637329 Score: 331
Period size: 40 Copynumber: 4.7 Consensus size: 40
68637132 GCAAACACAT
* * *
68637142 TTGCCTTCGGGTCTTAACCCGGACATATCAACTTGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
68637182 TTGCCTTCGGGTCTTAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
68637222 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
68637262 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
68637302 TTGCCTTCGGGTCTTAGCCCGGATATAT
1 TTGCCTTCGGGTCTTAGCCCGGATATAT
68637330 TCCAATGCTC
Statistics
Matches: 141, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 141 1.00
ACGTcount: A:0.22, C:0.27, G:0.20, T:0.31
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
Found at i:68641106 original size:47 final size:47
Alignment explanation
Indices: 68641052--68641245 Score: 271
Period size: 47 Copynumber: 4.1 Consensus size: 47
68641042 TTAGGATTTT
** * *
68641052 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
68641099 ATGTGATGAATGTGAACATGCATATATGTGATAAGGTCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
68641146 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * * *
68641193 ATATGGTGGATGTGAACATGCATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
68641240 ATGTGA
1 ATGTGA
68641246 AATATGTATG
Statistics
Matches: 129, Mismatches: 18, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
47 129 1.00
ACGTcount: A:0.32, C:0.10, G:0.30, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:68641127 original size:25 final size:25
Alignment explanation
Indices: 68641099--68641177 Score: 69
Period size: 25 Copynumber: 3.3 Consensus size: 25
68641089 CGAATGGCCA
68641099 ATGTGATGAATGTGAACATGCATAT
1 ATGTGATGAATGTGAACATGCATAT
* *
68641124 ATGTGAT-AAGGTCG-A-ATGGC-CA-
1 ATGTGATGAATGT-GAACAT-GCATAT
*
68641146 ATGTGATGAATGTGAGCATGCATAT
1 ATGTGATGAATGTGAACATGCATAT
*
68641171 GTGTGAT
1 ATGTGAT
68641178 AAGGCCGAAT
Statistics
Matches: 41, Mismatches: 6, Indels: 14
0.67 0.10 0.23
Matches are distributed among these distances:
22 8 0.20
23 9 0.22
24 10 0.24
25 14 0.34
ACGTcount: A:0.32, C:0.09, G:0.29, T:0.30
Consensus pattern (25 bp):
ATGTGATGAATGTGAACATGCATAT
Found at i:68641152 original size:22 final size:22
Alignment explanation
Indices: 68641081--68641152 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
68641071 GTATATATGA
*
68641081 GATAAGGCCGAATGGCCAATGT
1 GATAAGGTCGAATGGCCAATGT
* *
68641103 GATGAATGT-GAACAT-GCATATATGT
1 GAT-AAGGTCG-A-ATGGC-CA-ATGT
68641128 GATAAGGTCGAATGGCCAATGT
1 GATAAGGTCGAATGGCCAATGT
68641150 GAT
1 GAT
68641153 GAATGTGAGC
Statistics
Matches: 38, Mismatches: 5, Indels: 14
0.67 0.09 0.25
Matches are distributed among these distances:
22 11 0.29
23 9 0.24
24 10 0.26
25 8 0.21
ACGTcount: A:0.33, C:0.12, G:0.29, T:0.25
Consensus pattern (22 bp):
GATAAGGTCGAATGGCCAATGT
Found at i:68641274 original size:48 final size:48
Alignment explanation
Indices: 68641215--68641349 Score: 243
Period size: 48 Copynumber: 2.8 Consensus size: 48
68641205 TGAACATGCA
68641215 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
*
68641263 TATATGCGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* *
68641311 TATACGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
68641350 GGCGATGTGC
Statistics
Matches: 83, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 83 1.00
ACGTcount: A:0.35, C:0.08, G:0.27, T:0.30
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
Found at i:68641537 original size:37 final size:37
Alignment explanation
Indices: 68641487--68641586 Score: 191
Period size: 37 Copynumber: 2.7 Consensus size: 37
68641477 ATGAAATTTG
68641487 GAGATTATGTCCGGGTAAGACCCGATGACTACGTGTA
1 GAGATTATGTCCGGGTAAGACCCGATGACTACGTGTA
68641524 GAGATTATGTCCGGGTAAGACCCGATGACTACGTGTA
1 GAGATTATGTCCGGGTAAGACCCGATGACTACGTGTA
*
68641561 GAGATTTTGTCCGGGTAAGACCCGAT
1 GAGATTATGTCCGGGTAAGACCCGAT
68641587 AACTTCGTTG
Statistics
Matches: 62, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 62 1.00
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
GAGATTATGTCCGGGTAAGACCCGATGACTACGTGTA
Found at i:68650044 original size:43 final size:41
Alignment explanation
Indices: 68649942--68650044 Score: 116
Period size: 41 Copynumber: 2.5 Consensus size: 41
68649932 GTGTGATTCG
* ***
68649942 TGTAAGACCATGTCTGGGACATTGGCATCGTATATAATTTG
1 TGTAAGACCATGTCTGGGACAGTGGCATCGTATATAATACA
* * *
68649983 TGTAAGACCCTGTCTGGGACAGTGGCATCGATATGTGATAACA
1 TGTAAGACCATGTCTGGGACAGTGGCATCG-TATATAAT-ACA
*
68650026 TGTAAGACCATATCTGGGA
1 TGTAAGACCATGTCTGGGA
68650045 TATGGCGTTA
Statistics
Matches: 51, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
41 28 0.55
42 6 0.12
43 17 0.33
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.29
Consensus pattern (41 bp):
TGTAAGACCATGTCTGGGACAGTGGCATCGTATATAATACA
Found at i:68650592 original size:15 final size:15
Alignment explanation
Indices: 68650574--68650606 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
68650564 CTCGATCACG
68650574 GTATAAGCTCATTTT
1 GTATAAGCTCATTTT
68650589 GTATAAGCTCATTTT
1 GTATAAGCTCATTTT
68650604 GTA
1 GTA
68650607 AAGTATGTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.27, C:0.12, G:0.15, T:0.45
Consensus pattern (15 bp):
GTATAAGCTCATTTT
Found at i:68657093 original size:49 final size:49
Alignment explanation
Indices: 68657033--68657448 Score: 364
Period size: 49 Copynumber: 8.7 Consensus size: 49
68657023 AGGATAAGTT
*
68657033 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGTTATCATCATCGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTATCATCATCGAG
*
68657082 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATCATCGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTATCATCATCGAG
* * * * *
68657131 GCCAATGCCATGTCCCAGACAAGGTCTTATACTAGCTATCATTATCAAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTATCATCATCGAG
* * * *
68657180 GCCGATGCAATGTCCCAGACATGGTCTTATACTAGCTCTCGTAT-AT-AAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTATC--ATCATCGAG
* * * * *
68657229 TGCTGATG-CATGTCGCAGACAT-GACTTACACTAGC-A-CAAC-TCTTA-
1 -GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTATCATCATC-GAG
* * ** *
68657274 GCCGATG-CATGTCCCAGACA-CGTCTTACACTGGCTATCATTGTCGAT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTATCATCATCGAG
* * * * ** *
68657321 GCCGATG-CATGTTCCAGACAT-GTCTTGCATTGGC-ACTCATC-TTTAC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTA-TCATCATCGAG
* * *
68657367 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGC-ACTCATAAT-GTG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTA-TCATCATCGAG
*
68657415 GCCGATG-CATGTCACAGACAT-GTCTTACACTAGC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGC
68657449 ACACAAGAAA
Statistics
Matches: 308, Mismatches: 43, Indels: 35
0.80 0.11 0.09
Matches are distributed among these distances:
44 31 0.10
45 1 0.00
46 27 0.09
47 62 0.20
48 35 0.11
49 142 0.46
50 8 0.03
51 2 0.01
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.27
Consensus pattern (49 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTATCATCATCGAG
Found at i:68657419 original size:141 final size:145
Alignment explanation
Indices: 68657033--68657448 Score: 406
Period size: 141 Copynumber: 2.9 Consensus size: 145
68657023 AGGATAAGTT
* * **
68657033 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGTTA-TCATCAT-CGAG-GCCGATGCCATGT
1 GCCGATGCAATGTCCCAGACATGGTCTTACACTAG-CACTCAT-ATATAAGCGCCGATGCCATGT
* * * *
68657095 CCCAGACATGGTCTTACACTGGCTATCATCATCGAGGCCAATGCCATGTCCCAGACAAGGTCTTA
64 CCCAGACATGGTCTTACACTGGC-ATCATAATCGTGGCCGATG-CATGTCCCAGAC-ACGTCTTA
*
68657160 TACTAGCTATCATTATCAAG
126 CACTAGCTATCATTATCAAG
* * * * * *
68657180 GCCGATGCAATGTCCCAGACATGGTCTTATACTAGCTCTCGTATATAAGTGCTGATG-CATGTCG
1 GCCGATGCAATGTCCCAGACATGGTCTTACACTAGCACTCATATATAAGCGCCGATGCCATGTCC
* * * * * *
68657244 CAGACAT-GACTTACACTAGCA-CA-ACTCTTAGCCGATGCATGTCCCAGACACGTCTTACACTG
66 CAGACATGGTCTTACACTGGCATCATAATCGTGGCCGATGCATGTCCCAGACACGTCTTACACTA
* * *
68657306 GCTATCATTGTCGAT
131 GCTATCATTATCAAG
* * * * * *
68657321 GCCGATGC-ATGTTCCAGACAT-GTCTTGCATTGGCACTCATCT-TTA-CGCCGATGCCATGTCC
1 GCCGATGCAATGTCCCAGACATGGTCTTACACTAGCACTCATATATAAGCGCCGATGCCATGTCC
* *
68657382 CAGACATGGTCTTACACTGGCACTCATAAT-GTGGCCGATGCATGTCACAGACATGTCTTACACT
66 CAGACATGGTCTTACACTGGCA-TCATAATCGTGGCCGATGCATGTCCCAGACACGTCTTACACT
68657446 AGC
130 AGC
68657449 ACACAAGAAA
Statistics
Matches: 218, Mismatches: 43, Indels: 22
0.77 0.15 0.08
Matches are distributed among these distances:
137 6 0.03
138 15 0.07
139 26 0.12
140 12 0.06
141 64 0.29
142 14 0.06
143 8 0.04
144 2 0.01
145 1 0.00
146 13 0.06
147 51 0.23
148 6 0.03
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.27
Consensus pattern (145 bp):
GCCGATGCAATGTCCCAGACATGGTCTTACACTAGCACTCATATATAAGCGCCGATGCCATGTCC
CAGACATGGTCTTACACTGGCATCATAATCGTGGCCGATGCATGTCCCAGACACGTCTTACACTA
GCTATCATTATCAAG
Found at i:68658183 original size:12 final size:12
Alignment explanation
Indices: 68658166--68658190 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
68658156 CAAAAATGTA
68658166 AAAATCATCAAG
1 AAAATCATCAAG
68658178 AAAATCATCAAG
1 AAAATCATCAAG
68658190 A
1 A
68658191 TCACTTACAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.16, G:0.08, T:0.16
Consensus pattern (12 bp):
AAAATCATCAAG
Found at i:68665597 original size:26 final size:25
Alignment explanation
Indices: 68665557--68665606 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 25
68665547 ACAATTCACC
68665557 AAGCCCACGGCAACC-CTAGCTCATT
1 AAGCCCACGGCAACCAC-AGCTCATT
*
68665582 AAGCCCATTGGCAACCACAGCTCAT
1 AAGCCCA-CGGCAACCACAGCTCAT
68665607 CTAGATCACT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
25 7 0.32
26 14 0.64
27 1 0.05
ACGTcount: A:0.30, C:0.38, G:0.16, T:0.16
Consensus pattern (25 bp):
AAGCCCACGGCAACCACAGCTCATT
Found at i:68669942 original size:46 final size:48
Alignment explanation
Indices: 68669838--68669957 Score: 154
Period size: 48 Copynumber: 2.5 Consensus size: 48
68669828 TGTCTTCGAC
** * *
68669838 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATATATAAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCATATATATATAAT
* * *
68669886 ATGGGCTTACATGGCTCATTCCTGTCTCCAAAGCCATATA-A-CTGAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCATATATATATAAT
*
68669932 ATGGACTTACATGGCTCATTTCTGTC
1 ATGGACTTACATGGCTCATTCCTGTC
68669958 CTGTCCTGTC
Statistics
Matches: 63, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
46 27 0.43
47 1 0.02
48 35 0.56
ACGTcount: A:0.28, C:0.23, G:0.15, T:0.35
Consensus pattern (48 bp):
ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCATATATATATAAT
Found at i:68672926 original size:12 final size:12
Alignment explanation
Indices: 68672909--68672939 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
68672899 AATGATTTTT
68672909 TATTTTTAAAAA
1 TATTTTTAAAAA
68672921 TATTTTTAAAAA
1 TATTTTTAAAAA
68672933 TATTTTT
1 TATTTTT
68672940 TTTATTTTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (12 bp):
TATTTTTAAAAA
Found at i:68673250 original size:10 final size:9
Alignment explanation
Indices: 68673217--68673275 Score: 52
Period size: 9 Copynumber: 6.8 Consensus size: 9
68673207 AACTAAGGTC
68673217 AATTTTTAT
1 AATTTTTAT
68673226 -ATTTTTAT
1 AATTTTTAT
* *
68673234 AAATTTAAT
1 AATTTTTAT
68673243 AATTTTTAAT
1 AATTTTT-AT
* *
68673253 AACTATT-T
1 AATTTTTAT
68673261 -ATTTTTAT
1 AATTTTTAT
68673269 AATTTTT
1 AATTTTT
68673276 TAAATATTTT
Statistics
Matches: 38, Mismatches: 8, Indels: 8
0.70 0.15 0.15
Matches are distributed among these distances:
7 4 0.11
8 10 0.26
9 17 0.45
10 7 0.18
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.63
Consensus pattern (9 bp):
AATTTTTAT
Found at i:68675089 original size:10 final size:10
Alignment explanation
Indices: 68675070--68675099 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
68675060 CTTTGGTTCT
*
68675070 TTTATCTTTC
1 TTTATTTTTC
68675080 TTTATTTTTC
1 TTTATTTTTC
68675090 TTTATTTTTC
1 TTTATTTTTC
68675100 ATTCTCTTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.10, C:0.13, G:0.00, T:0.77
Consensus pattern (10 bp):
TTTATTTTTC
Found at i:68677433 original size:30 final size:30
Alignment explanation
Indices: 68677365--68677433 Score: 77
Period size: 31 Copynumber: 2.3 Consensus size: 30
68677355 TTGGTCATGA
* * *
68677365 GGTGTGAACAAGCTAAGTTGAATGGTCATT
1 GGTGTGAACAAGCTAAATCGAATAGTCATT
*
68677395 GAGTGTGAACAAG-TAAAATCGAATAGTCTTT
1 G-GTGTGAACAAGCT-AAATCGAATAGTCATT
68677426 GGTGTGAA
1 GGTGTGAA
68677434 AACCCTTTAA
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
30 9 0.27
31 24 0.73
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (30 bp):
GGTGTGAACAAGCTAAATCGAATAGTCATT
Found at i:68679008 original size:40 final size:40
Alignment explanation
Indices: 68678963--68679154 Score: 226
Period size: 40 Copynumber: 4.8 Consensus size: 40
68678953 ATAACCACAA
* * *
68678963 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
*
68679003 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
* * *
68679043 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC
* * * * *
68679083 GCATAAATGCCTTCGGGACTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC
* *
68679123 GCATAAATGCCTTCGGGACTTAGCCCGGATAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAT
68679155 CATTCAAATG
Statistics
Matches: 142, Mismatches: 9, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
39 1 0.01
40 137 0.96
41 4 0.03
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
Found at i:68679047 original size:80 final size:80
Alignment explanation
Indices: 68678934--68679153 Score: 248
Period size: 80 Copynumber: 2.8 Consensus size: 80
68678924 ACCCAAGTTT
* * * * * * * * *
68678934 CTTCGGAATTTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGGT-ATAG
1 CTTCGGGACTTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAAG
*
68678997 CAACTCGCACAAATGC
66 C-ACTAGCACAAATGC
* * *
68679013 CTTCGGGTCTTAGCCCGGAT-ATATCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAA
1 CTTCGGGACTTAGCCCGGATAAAATC-ACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAA
* *
68679077 TCACTAGCATAAATGC
65 GCACTAGCACAAATGC
* *
68679093 CTTCGGGACTTAGCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGGATA
1 CTTCGGGACTTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATA
68679154 TCATTCAAAT
Statistics
Matches: 117, Mismatches: 20, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
79 12 0.10
80 98 0.84
81 7 0.06
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAAG
CACTAGCACAAATGC
Found at i:68687128 original size:40 final size:40
Alignment explanation
Indices: 68687083--68687267 Score: 194
Period size: 40 Copynumber: 4.6 Consensus size: 40
68687073 TATAACACAA
* * *
68687083 GCACAATTGCCTTCGGGTCTTAACCCAGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCAGATATAGCAACTC
* *
68687123 GCACAAATGCCTTTGGGTCTTAGCCCAGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCAGATATAGCAACTC
* * *
68687163 GCACAAATGCCTTCGGGTCTTAGCCCAGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCAGAT-ATAGCAACTC
* * * * * *
68687203 GCATAAATGCCTTCGGGACTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCAGAT-ATAGCAACTC
* *
68687243 GCATAAATGCCTTCGGGACTTAGCC
1 GCACAAATGCCTTCGGGTCTTAGCC
68687268 TGGATATCAT
Statistics
Matches: 133, Mismatches: 11, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
40 129 0.97
41 4 0.03
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.24
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCAGATATAGCAACTC
Found at i:68687225 original size:80 final size:80
Alignment explanation
Indices: 68687082--68687267 Score: 214
Period size: 80 Copynumber: 2.3 Consensus size: 80
68687072 ATATAACACA
* * * * * * *
68687082 AGCACAATTGCCTTCGGGTCTTAACCCAGGTATAGCAACTCGCACAAATGCCTTTGGGTCTTAGC
1 AGCACAAATGCCTTCGGGTCTTAGCCCAGATAAAGCAACTAGCACAAATGCCTTCGGGACTTAGC
*
68687147 CCAGAT-ATATCAACT
66 CCAGATAAAATC-ACT
* * *
68687162 CGCACAAATGCCTTCGGGTCTTAGCCCAGATAAAATC-ACTAGCATAAATGCCTTCGGGACTTAG
1 AGCACAAATGCCTTCGGGTCTTAGCCCAGAT-AAAGCAACTAGCACAAATGCCTTCGGGACTTAG
*
68687226 CCCGGATAAAATCACT
65 CCCAGATAAAATCACT
* *
68687242 AGCATAAATGCCTTCGGGACTTAGCC
1 AGCACAAATGCCTTCGGGTCTTAGCC
68687268 TGGATATCAT
Statistics
Matches: 89, Mismatches: 15, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
80 82 0.92
81 7 0.08
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.24
Consensus pattern (80 bp):
AGCACAAATGCCTTCGGGTCTTAGCCCAGATAAAGCAACTAGCACAAATGCCTTCGGGACTTAGC
CCAGATAAAATCACT
Found at i:68687273 original size:40 final size:40
Alignment explanation
Indices: 68687127--68687267 Score: 203
Period size: 40 Copynumber: 3.5 Consensus size: 40
68687117 CAACTCGCAC
* * * * *
68687127 AAATGCCTTTGGGTCTTAGCCCAGAT-ATATCAACTCGCAC
1 AAATGCCTTCGGGACTTAGCCCAGATAAAATC-ACTAGCAT
*
68687167 AAATGCCTTCGGGTCTTAGCCCAGATAAAATCACTAGCAT
1 AAATGCCTTCGGGACTTAGCCCAGATAAAATCACTAGCAT
*
68687207 AAATGCCTTCGGGACTTAGCCCGGATAAAATCACTAGCAT
1 AAATGCCTTCGGGACTTAGCCCAGATAAAATCACTAGCAT
68687247 AAATGCCTTCGGGACTTAGCC
1 AAATGCCTTCGGGACTTAGCC
68687268 TGGATATCAT
Statistics
Matches: 94, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
40 90 0.96
41 4 0.04
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (40 bp):
AAATGCCTTCGGGACTTAGCCCAGATAAAATCACTAGCAT
Found at i:68717260 original size:22 final size:22
Alignment explanation
Indices: 68717242--68717283 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
68717232 TTCTTTTGTT
68717242 TCTTT-TTCTAACTCATTTTCTC
1 TCTTTCTTC-AACTCATTTTCTC
*
68717264 TCTTTCTTCAACTTATTTTC
1 TCTTTCTTCAACTCATTTTC
68717284 AATTTTCTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 15 0.83
23 3 0.17
ACGTcount: A:0.14, C:0.26, G:0.00, T:0.60
Consensus pattern (22 bp):
TCTTTCTTCAACTCATTTTCTC
Found at i:68721213 original size:14 final size:15
Alignment explanation
Indices: 68721194--68721222 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
68721184 CTGGGCTGTG
68721194 TGGGCCA-ATGGATA
1 TGGGCCACATGGATA
68721208 TGGGCCACATGGATA
1 TGGGCCACATGGATA
68721223 AATGTATGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.28, C:0.17, G:0.34, T:0.21
Consensus pattern (15 bp):
TGGGCCACATGGATA
Found at i:68721667 original size:27 final size:27
Alignment explanation
Indices: 68721629--68721837 Score: 167
Period size: 27 Copynumber: 7.7 Consensus size: 27
68721619 GACCCTGACA
* * *
68721629 TGTAAAATTACTAAAATACTCTTGATT
1 TGTAAAATTACTGAAATACCCCTGATT
68721656 TGTAAAATTACTGAAATACCCCTGATT
1 TGTAAAATTACTGAAATACCCCTGATT
* * * *
68721683 AGTAATATTACTGAAATACTCAC-GAGT
1 TGTAAAATTACTGAAATAC-CCCTGATT
* *
68721710 TGTAAAATTA-TCGAAATACCCCCGAGT
1 TGTAAAATTACT-GAAATACCCCTGATT
* *
68721737 TGTAAAATTA-TCGAAATAACCCCTAACT
1 TGTAAAATTACT-GAAAT-ACCCCTGATT
* * *
68721765 TGTAAAATTATTGAAATACTCTTGA-T
1 TGTAAAATTACTGAAATACCCCTGATT
* * *
68721791 TGTGAAATTATTGAAATACCTC-GATT
1 TGTAAAATTACTGAAATACCCCTGATT
* *
68721817 TGTGGAAATTACTAAAATACC
1 TGT-AAAATTACTGAAATACC
68721838 GGTAGAATTA
Statistics
Matches: 153, Mismatches: 22, Indels: 14
0.81 0.12 0.07
Matches are distributed among these distances:
25 2 0.01
26 26 0.17
27 100 0.65
28 24 0.16
29 1 0.01
ACGTcount: A:0.39, C:0.15, G:0.12, T:0.33
Consensus pattern (27 bp):
TGTAAAATTACTGAAATACCCCTGATT
Found at i:68721767 original size:28 final size:28
Alignment explanation
Indices: 68721709--68721782 Score: 105
Period size: 28 Copynumber: 2.7 Consensus size: 28
68721699 TACTCACGAG
* *
68721709 TTGTAAAATTATCGAAAT-ACCCCCGAG
1 TTGTAAAATTATCGAAATAACCCCCAAC
*
68721736 TTGTAAAATTATCGAAATAACCCCTAAC
1 TTGTAAAATTATCGAAATAACCCCCAAC
*
68721764 TTGTAAAATTATTGAAATA
1 TTGTAAAATTATCGAAATA
68721783 CTCTTGATTG
Statistics
Matches: 42, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
27 18 0.43
28 24 0.57
ACGTcount: A:0.42, C:0.16, G:0.11, T:0.31
Consensus pattern (28 bp):
TTGTAAAATTATCGAAATAACCCCCAAC
Found at i:68721799 original size:81 final size:81
Alignment explanation
Indices: 68721655--68721837 Score: 203
Period size: 81 Copynumber: 2.3 Consensus size: 81
68721645 TACTCTTGAT
* *
68721655 TTGTAAAATTACTGAAATACCCCTGATTAGTAATATTACTGAAATACTCACGAGTTGTAAAATTA
1 TTGTAAAATTACTGAAATACCCCTAATTAGTAAAATTACTGAAATACTCACGAGTTGTAAAATTA
68721720 TCGAAATACCCCCGAG
66 TCGAAATACCCCCGAG
* ** *
68721736 TTGTAAAATTA-TCGAAATAACCCCTAACTT-GTAAAATTATTGAAATACTCTTGA-TTGTGAAA
1 TTGTAAAATTACT-GAAAT-ACCCCTAA-TTAGTAAAATTACTGAAATACTCACGAGTTGTAAAA
* * *
68721798 TTATTGAAATA-CCTCGAT
63 TTATCGAAATACCCCCGAG
* *
68721816 TTGTGGAAATTACTAAAATACC
1 TTGT-AAAATTACTGAAATACC
68721838 GGTAGAATTA
Statistics
Matches: 86, Mismatches: 11, Indels: 11
0.80 0.10 0.10
Matches are distributed among these distances:
80 13 0.15
81 43 0.50
82 28 0.33
83 2 0.02
ACGTcount: A:0.39, C:0.16, G:0.13, T:0.33
Consensus pattern (81 bp):
TTGTAAAATTACTGAAATACCCCTAATTAGTAAAATTACTGAAATACTCACGAGTTGTAAAATTA
TCGAAATACCCCCGAG
Found at i:68723240 original size:46 final size:46
Alignment explanation
Indices: 68723190--68723360 Score: 204
Period size: 46 Copynumber: 3.7 Consensus size: 46
68723180 TGGTTGAGCA
*
68723190 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * * ** *
68723236 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGAATGTA-ACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACT-TATGGATGC-AAACG
*
68723282 TCCGAACTCGTTGAGTTGAGTCCGAGTTCA-TTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
68723327 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
68723361 GGGGCGGGTT
Statistics
Matches: 103, Mismatches: 17, Indels: 10
0.79 0.13 0.08
Matches are distributed among these distances:
45 35 0.34
46 68 0.66
ACGTcount: A:0.22, C:0.21, G:0.27, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:68723355 original size:91 final size:92
Alignment explanation
Indices: 68723187--68723355 Score: 295
Period size: 91 Copynumber: 1.8 Consensus size: 92
68723177 GGATGGTTGA
* *
68723187 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
68723252 TGAGTCCGAGTTCGTGAATGTAACTAG
66 TGAGTCCGAGTTCGTGAATGTAACTAG
* *
68723279 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCA-TTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
68723343 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
68723356 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
91 40 0.55
92 33 0.45
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.28
Consensus pattern (92 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAATGTAACTAG
Found at i:68723619 original size:19 final size:20
Alignment explanation
Indices: 68723584--68723621 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
68723574 ATAAGGTGGT
68723584 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
68723604 AAGAT-ATGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
68723622 TGGTGATACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.39, C:0.00, G:0.21, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:68730785 original size:46 final size:45
Alignment explanation
Indices: 68730735--68730907 Score: 188
Period size: 46 Copynumber: 3.7 Consensus size: 45
68730725 TGGTTGAGCA
*
68730735 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-CTTATGGATGCAAACG
* * * * *
68730781 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGA--AATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCCTTATGGATGCAA--A--CG
*
68730828 TCCGAACTCGTTGAGTTGAGTCCGAGTATCCTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGT-TCCTTATGGATGCAAACG
* *
68730874 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-CTTA
68730908 GGGGCGGGTT
Statistics
Matches: 105, Mismatches: 14, Indels: 16
0.78 0.10 0.12
Matches are distributed among these distances:
43 5 0.05
45 5 0.05
46 59 0.56
47 27 0.26
48 5 0.05
50 4 0.04
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCCTTATGGATGCAAACG
Found at i:68730891 original size:93 final size:93
Alignment explanation
Indices: 68730732--68730902 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
68730722 GGATGGTTGA
* *
68730732 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
68730797 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* *
68730825 GCATCCGAACTCGTTGAGTTGAGTCCGAGTATC-CTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGT-TCACTTATGGATGCAAACGCCCGAACTCGTTGAG
68730889 TTGAGTCCGAGTTC
65 TTGAGTCCGAGTTC
68730903 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
93 71 0.97
94 2 0.03
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:68731160 original size:19 final size:20
Alignment explanation
Indices: 68731132--68731169 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
68731122 ATAAGGTGGT
68731132 AAGATGATGA-ATGATGTTTA
1 AAGATGATGATAT-ATGTTTA
68731152 AAGAT-ATGATATATGTTT
1 AAGATGATGATATATGTTT
68731170 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.39, C:0.00, G:0.21, T:0.39
Consensus pattern (20 bp):
AAGATGATGATATATGTTTA
Found at i:68732147 original size:22 final size:22
Alignment explanation
Indices: 68732099--68732149 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 22
68732089 GTAATCTAAT
*
68732099 TATGGCTCTGTGCCAACCTTAA
1 TATGGCTCCGTGCCAACCTTAA
* *
68732121 AATGGCTCCGTGCC-ATCTTGAA
1 TATGGCTCCGTGCCAACCTT-AA
68732143 TATGGCT
1 TATGGCT
68732150 GTATGCCAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
21 4 0.17
22 20 0.83
ACGTcount: A:0.22, C:0.25, G:0.22, T:0.31
Consensus pattern (22 bp):
TATGGCTCCGTGCCAACCTTAA
Found at i:68733167 original size:17 final size:18
Alignment explanation
Indices: 68733137--68733177 Score: 50
Period size: 17 Copynumber: 2.3 Consensus size: 18
68733127 TTTTACTCAA
68733137 GTTTTCAAATAAAA-AGG
1 GTTTTCAAATAAAACAGG
*
68733154 GTTTTC-AATGAAAACATG
1 GTTTTCAAAT-AAAACAGG
68733172 GTTTTC
1 GTTTTC
68733178 GAAAAACACT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
16 3 0.14
17 10 0.48
18 8 0.38
ACGTcount: A:0.37, C:0.10, G:0.17, T:0.37
Consensus pattern (18 bp):
GTTTTCAAATAAAACAGG
Found at i:68735861 original size:27 final size:27
Alignment explanation
Indices: 68735824--68736058 Score: 237
Period size: 27 Copynumber: 8.7 Consensus size: 27
68735814 GTCATTAAGA
*
68735824 CCCTCGATTTGTAAAATTACTAAAATAC
1 CCCT-GATTTGTAAAATTACTGAAATAC
* *
68735852 CCCTAATTTGTAAAATTACCGAAATAC
1 CCCTGATTTGTAAAATTACTGAAATAC
* *
68735879 CCCCGATTTGTAAAATTACTAAAATAC
1 CCCTGATTTGTAAAATTACTGAAATAC
* *
68735906 CCAC-AAGTTGTAAAATTA-TCGAAATAC
1 CC-CTGATTTGTAAAATTACT-GAAATAC
** *
68735933 CCCAAACTTGTAAAATTACTGAAATAC
1 CCCTGATTTGTAAAATTACTGAAATAC
68735960 CCCTGATTTGTAAAATTA-TCGAAATAC
1 CCCTGATTTGTAAAATTACT-GAAATAC
* * * *
68735987 CCCTGACTTGTAAAGTTATTGAAATAT
1 CCCTGATTTGTAAAATTACTGAAATAC
*
68736014 CCCTGATTTGTGAAATTA-TCGAAATA-
1 CCCTGATTTGTAAAATTACT-GAAATAC
*
68736040 CCCTCGATTTGTGAAATTA
1 CCCT-GATTTGTAAAATTA
68736059 TCGGAATACC
Statistics
Matches: 179, Mismatches: 20, Indels: 17
0.83 0.09 0.08
Matches are distributed among these distances:
26 8 0.04
27 164 0.92
28 7 0.04
ACGTcount: A:0.38, C:0.20, G:0.11, T:0.31
Consensus pattern (27 bp):
CCCTGATTTGTAAAATTACTGAAATAC
Found at i:68735917 original size:54 final size:54
Alignment explanation
Indices: 68735823--68736058 Score: 294
Period size: 54 Copynumber: 4.4 Consensus size: 54
68735813 GGTCATTAAG
* *
68735823 ACCCTCGATTTGTAAAATTACTAAAATACCCCTAATTTGTAAAATTACCGAAAT
1 ACCCCCGATTTGTAAAATTACTAAAATACCCCTAATTTGTAAAATTATCGAAAT
*
68735877 ACCCCCGATTTGTAAAATTACTAAAATACCCAC-AAGTTGTAAAATTATCGAAAT
1 ACCCCCGATTTGTAAAATTACTAAAATACCC-CTAATTTGTAAAATTATCGAAAT
** * * *
68735931 ACCCCAAACTTGTAAAATTACTGAAATACCCCTGATTTGTAAAATTATCGAAAT
1 ACCCCCGATTTGTAAAATTACTAAAATACCCCTAATTTGTAAAATTATCGAAAT
* * * * * * * *
68735985 ACCCCTGACTTGTAAAGTTATTGAAATATCCCTGATTTGTGAAATTATCGAAAT
1 ACCCCCGATTTGTAAAATTACTAAAATACCCCTAATTTGTAAAATTATCGAAAT
* *
68736039 ACCCTCGATTTGTGAAATTA
1 ACCCCCGATTTGTAAAATTA
68736059 TCGGAATACC
Statistics
Matches: 160, Mismatches: 20, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
53 1 0.01
54 158 0.99
55 1 0.01
ACGTcount: A:0.39, C:0.19, G:0.11, T:0.31
Consensus pattern (54 bp):
ACCCCCGATTTGTAAAATTACTAAAATACCCCTAATTTGTAAAATTATCGAAAT
Found at i:68736085 original size:27 final size:27
Alignment explanation
Indices: 68736055--68736139 Score: 82
Period size: 27 Copynumber: 3.1 Consensus size: 27
68736045 GATTTGTGAA
* * *
68736055 ATTATCGGAATACCTCTATGGGGTAGG
1 ATTATCGAAAAACCCCTATGGGGTAGG
*
68736082 ATTATCGAAAAACCCCTTTGGGGTAGG
1 ATTATCGAAAAACCCCTATGGGGTAGG
* * * *
68736109 ATTA-CAAAAATACCCCTGTAGAGTAGG
1 ATTATCGAAAA-ACCCCTATGGGGTAGG
68736136 ATTA
1 ATTA
68736140 CTGAAATACC
Statistics
Matches: 49, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
26 5 0.10
27 44 0.90
ACGTcount: A:0.33, C:0.16, G:0.24, T:0.27
Consensus pattern (27 bp):
ATTATCGAAAAACCCCTATGGGGTAGG
Found at i:68736140 original size:27 final size:27
Alignment explanation
Indices: 68736077--68736156 Score: 81
Period size: 27 Copynumber: 3.0 Consensus size: 27
68736067 CCTCTATGGG
* * * *
68736077 GTAGGATTATCGAAAA-ACCCCTTTGGG
1 GTAGGATTA-CAAAAATACCCCTGTAGA
68736104 GTAGGATTACAAAAATACCCCTGTAGA
1 GTAGGATTACAAAAATACCCCTGTAGA
** *
68736131 GTAGGATTACTGAAATACCCTTGTAG
1 GTAGGATTACAAAAATACCCCTGTAG
68736157 GGTAAAATGC
Statistics
Matches: 45, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
26 5 0.11
27 40 0.89
ACGTcount: A:0.34, C:0.17, G:0.23, T:0.26
Consensus pattern (27 bp):
GTAGGATTACAAAAATACCCCTGTAGA
Found at i:68736213 original size:26 final size:26
Alignment explanation
Indices: 68736148--68736214 Score: 66
Period size: 26 Copynumber: 2.5 Consensus size: 26
68736138 TACTGAAATA
*
68736148 CCCTTGTAGGGTAAAATGCTCGTTTTG
1 CCCTTGTA-GGTAAAATACTCGTTTTG
**
68736175 CCC-TAAAGAGTAAAATAACT-GTTTTG
1 CCCTTGTAG-GTAAAAT-ACTCGTTTTG
68736201 CCCTTGTAGGTAAA
1 CCCTTGTAGGTAAA
68736215 TGACTGACTT
Statistics
Matches: 32, Mismatches: 5, Indels: 7
0.73 0.11 0.16
Matches are distributed among these distances:
25 1 0.03
26 23 0.72
27 8 0.25
ACGTcount: A:0.28, C:0.18, G:0.21, T:0.33
Consensus pattern (26 bp):
CCCTTGTAGGTAAAATACTCGTTTTG
Done.