Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 213 of 349
Found at i:69202819 original size:47 final size:47
Alignment explanation
Indices: 69202750--69202959 Score: 193
Period size: 46 Copynumber: 4.5 Consensus size: 47
69202740 TAAGGTACCG
* *
69202750 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCATATCTC-AAGTCA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCT-ACATCTCGAAGCCA
* * * *
69202797 ATGCCATGTCCCAGACATGGTCTTACACTGACTACCATCTCGTAGTCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTA-CATCTCGAAGCCA
* * * * *
69202845 ACG-CATGTCTC-GAACAT-GACTTACACTGGCTTACGTCTCGAGGCCA
1 ATGCCATGTCCCAG-ACATGGTCTTACACTGGC-TACATCTCGAAGCCA
* *
69202891 ATG-CATGTCCCAGACAT-GTCTTACACTAGCTTCATCTC-AATGCCGA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTACATCTCGAA-GCC-A
69202937 A-GCCATGTCCCAGACATGGTCTT
1 ATGCCATGTCCCAGACATGGTCTT
69202960 GCGTTGGCTC
Statistics
Matches: 134, Mismatches: 20, Indels: 18
0.78 0.12 0.10
Matches are distributed among these distances:
44 1 0.01
45 10 0.07
46 61 0.46
47 56 0.42
48 6 0.04
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (47 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGGCTACATCTCGAAGCCA
Found at i:69203007 original size:139 final size:139
Alignment explanation
Indices: 69202754--69203010 Score: 299
Period size: 139 Copynumber: 1.8 Consensus size: 139
69202744 GTACCGATGC
* *
69202754 CATGTCCCAGACATGGTCTTACACTGGCTCATATCTCAAGTCAATGCCATGTCCCAGACATGGTC
1 CATGTCCCAGACATGGTCTTACACTAGCTCA-ATCTCAAGCCAATGCCATGTCCCAGACATGGTC
* * * * *
69202819 TTACACTGACTACCATCTCGTAGTCGACGCATGTCTCGAACATGACTTACACTGGCTTACGTCTC
65 TTACACTGACTACCATATCGTAGCCGACGCAAGTCCCAAACATGACTTACACTGGCTTACGTCTC
69202884 GAGGCCAATG
130 GAGGCCAATG
69202894 CATGTCCCAGACAT-GTCTTACACTAGCTTC-ATCTCAATGCCGAA-GCCATGTCCCAGACATGG
1 CATGTCCCAGACATGGTCTTACACTAGC-TCAATCTCAA-GCC-AATGCCATGTCCCAGACATGG
* ** * * * *
69202956 TCTTGCGTTGGCT-CTCATAAT-GTGGCCGATGCAAGTCCCAAACATGTCTTACACT
63 TCTTACACTGACTAC-CAT-ATCGTAGCCGACGCAAGTCCCAAACATGACTTACACT
69203011 AGCTCACACA
Statistics
Matches: 98, Mismatches: 14, Indels: 11
0.80 0.11 0.09
Matches are distributed among these distances:
138 8 0.08
139 71 0.72
140 19 0.19
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (139 bp):
CATGTCCCAGACATGGTCTTACACTAGCTCAATCTCAAGCCAATGCCATGTCCCAGACATGGTCT
TACACTGACTACCATATCGTAGCCGACGCAAGTCCCAAACATGACTTACACTGGCTTACGTCTCG
AGGCCAATG
Found at i:69205285 original size:43 final size:43
Alignment explanation
Indices: 69205237--69205407 Score: 204
Period size: 43 Copynumber: 4.0 Consensus size: 43
69205227 AGCTCGTACA
*
69205237 ATGCCAACGTCCCAGACATGGTCTTACATGTAATCAAATATCG
1 ATGCCAACGTCCCAGACATGGTCTTACATGAAATCAAATATCG
* * * *
69205280 ATGCC-ACTGTCCCAGATAGGGTCTTATATGAAATCATATA-CG
1 ATGCCAAC-GTCCCAGACATGGTCTTACATGAAATCAAATATCG
* * *
69205322 ATGCCAATGTCCCAGAAATGGTCTTACACGTAAATCACAA-ATCG
1 ATGCCAACGTCCCAGACATGGTCTTACATG-AAATCA-AATATCG
* *
69205366 ATGCCAACGTCCCAGACGTGGTCTTACATGAAATCACATATC
1 ATGCCAACGTCCCAGACATGGTCTTACATGAAATCAAATATC
69205408 AAAATCCTAT
Statistics
Matches: 106, Mismatches: 16, Indels: 12
0.79 0.12 0.09
Matches are distributed among these distances:
42 28 0.26
43 49 0.46
44 29 0.27
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACATGGTCTTACATGAAATCAAATATCG
Found at i:69205389 original size:86 final size:85
Alignment explanation
Indices: 69205237--69205401 Score: 228
Period size: 86 Copynumber: 1.9 Consensus size: 85
69205227 AGCTCGTACA
* *
69205237 ATGCCAACGTCCCAGACATGGTCTTACATGTAATCAAATATCGATGCCACTGTCCCAGATAGGGT
1 ATGCCAACGTCCCAGAAATGGTCTTACACGTAATCAAATATCGATGCCACTGTCCCAGATAGGGT
*
69205302 CTTATATGAAATCATATACG
66 CTTACATGAAATCATATACG
* *
69205322 ATGCCAATGTCCCAGAAATGGTCTTACACGTAAATCACAA-ATCGATGCCAAC-GTCCCAGA-CG
1 ATGCCAACGTCCCAGAAATGGTCTTACACGT-AATCA-AATATCGATGCC-ACTGTCCCAGATAG
69205384 TGGTCTTACATGAAATCA
63 -GGTCTTACATGAAATCA
69205402 CATATCAAAA
Statistics
Matches: 71, Mismatches: 5, Indels: 7
0.86 0.06 0.08
Matches are distributed among these distances:
85 29 0.41
86 38 0.54
87 4 0.06
ACGTcount: A:0.33, C:0.25, G:0.18, T:0.25
Consensus pattern (85 bp):
ATGCCAACGTCCCAGAAATGGTCTTACACGTAATCAAATATCGATGCCACTGTCCCAGATAGGGT
CTTACATGAAATCATATACG
Found at i:69208560 original size:27 final size:26
Alignment explanation
Indices: 69208530--69208682 Score: 110
Period size: 27 Copynumber: 5.7 Consensus size: 26
69208520 TTTAGTTTAC
69208530 TAAAATTATCGAAATACCCTCGATTTG
1 TAAAATTA-CGAAATACCCTCGATTTG
** *
69208557 TAAAATTACTGAAATACATTCGACTTG
1 TAAAATTAC-GAAATACCCTCGATTTG
* *
69208584 TAAAATTACCAAAGTACCCTCGATTTA
1 TAAAATTACGAAA-TACCCTCGATTTG
* *** *
69208611 TAGAATTACTGTTTTACCCTCGATTTA
1 TAAAATTAC-GAAATACCCTCGATTTG
* ***
69208638 CAAAATTACCGTTTTACCCTCGA-TTG
1 TAAAATTA-CGAAATACCCTCGATTTG
*
69208664 TGAAATTACCGAAATACCC
1 TAAAATTA-CGAAATACCC
69208683 CTGTAAGATA
Statistics
Matches: 101, Mismatches: 21, Indels: 9
0.77 0.16 0.07
Matches are distributed among these distances:
26 20 0.20
27 80 0.79
28 1 0.01
ACGTcount: A:0.35, C:0.21, G:0.10, T:0.33
Consensus pattern (26 bp):
TAAAATTACGAAATACCCTCGATTTG
Found at i:69208700 original size:27 final size:27
Alignment explanation
Indices: 69208667--69209212 Score: 761
Period size: 27 Copynumber: 20.3 Consensus size: 27
69208657 TCGATTGTGA
* *
69208667 AATTACCGAAATACCCCTGTAAGATAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
69208694 AACTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
69208721 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
69208748 AATTACCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
69208775 AACTACCAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
**
69208802 AATTACCGAAATACCCCTAAAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
69208829 AATTACCAAAATACCCTTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
69208856 AACTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
69208883 AACTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
69208910 AACTACCGAAATACCCTTCTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
69208937 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
69208964 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
69208991 AATTACCAAAATACCCCTGCATGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
69209018 AACTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
69209045 AAATA-CGAAATACCCTTGTAGGATAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
69209071 AATTACCGAAATACTCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
69209098 AATTACAGAAATACTCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
69209125 AATTACTGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
69209152 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
69209179 AATTACCGAAATACCCTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
69209206 AATTACC
1 AATTACC
69209213 ATTTTGCCCC
Statistics
Matches: 465, Mismatches: 53, Indels: 2
0.89 0.10 0.00
Matches are distributed among these distances:
26 24 0.05
27 441 0.95
ACGTcount: A:0.36, C:0.22, G:0.20, T:0.22
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:69209491 original size:24 final size:25
Alignment explanation
Indices: 69209415--69209484 Score: 95
Period size: 25 Copynumber: 2.8 Consensus size: 25
69209405 AGGAAGTGCT
* * * *
69209415 AAAAGGGCTATGCCCAAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTATCA
69209440 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTATCA
*
69209465 AAAAGGGCTTTGCCCTAGTT
1 AAAAGGGCTTTGCCCCAGTT
69209485 ATTAAAAGAG
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 40 1.00
ACGTcount: A:0.29, C:0.23, G:0.23, T:0.26
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTATCA
Found at i:69210997 original size:93 final size:93
Alignment explanation
Indices: 69210867--69211037 Score: 274
Period size: 93 Copynumber: 1.8 Consensus size: 93
69210857 GCCCCTAAGT
*
69210867 GAACTCGGACTCAACTCAACGAGCTCGAGTGTCCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGAATGTCCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
69210932 TGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
* *
69210960 GAACTCGGACTCAACTCAATGAGTTCGGACAT-T-CGCATCCATAAGTGAACTCGGACTCAACTC
1 GAACTCGGACTCAACTCAACGAGCTC-GA-ATGTCCGCATCCATAAGTGAACTCGGACTCAACTC
69211023 AACGAGTTCGGATGC
64 AACGAGTTCGGATGC
69211038 TCAACCATCC
Statistics
Matches: 72, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
93 68 0.94
94 3 0.04
95 1 0.01
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGAATGTCCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:69211033 original size:46 final size:46
Alignment explanation
Indices: 69210862--69211034 Score: 169
Period size: 46 Copynumber: 3.7 Consensus size: 46
69210852 AACCCGCCCC
* *
69210862 TAAGTGAACTCGGACTCAACTCAACGAGCTC-GA-GTGTCCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACAT-T-CGCATCCA
* * *
69210908 TAAGTGAACTCGGACTCAACTCAATGAGTTCGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* * *
69210956 TCA-CGAACTCGGACTCAACTCAATGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
69211001 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
69211035 TGCTCAACCA
Statistics
Matches: 104, Mismatches: 12, Indels: 22
0.75 0.09 0.16
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 57 0.55
47 31 0.30
48 2 0.02
50 3 0.03
52 1 0.01
53 1 0.01
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:69214267 original size:68 final size:68
Alignment explanation
Indices: 69214187--69214342 Score: 149
Period size: 68 Copynumber: 2.2 Consensus size: 68
69214177 CATAATGTGT
* * * * * *
69214187 ACAAGA-AGGCTACGAGATACTATATAGTAGCTAGGTCACATGTGTGA-T-ACGGGATGTATC-C
1 ACAAGAGA-GCTACGAGAGA-TAAAT-GTAGCTAGGTCACATGCGTGATTCAAGGGAAGGA-CAC
69214248 CATGTAG
62 CATGTAG
* *
69214255 ACAAGAGAGCTACGTGAGAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ACAAGAGAGCTAC--GAGAGATAAATGTAGCTAGGTCACATGCGTGATT-CAAGGGAAGGACACC
69214320 ATGTAG
63 ATGTAG
69214326 ACAAGAGAGCTACGAGA
1 ACAAGAGAGCTACGAGA
69214343 CAAATCGGCT
Statistics
Matches: 73, Mismatches: 8, Indels: 13
0.78 0.09 0.14
Matches are distributed among these distances:
68 30 0.41
69 10 0.14
70 6 0.08
71 27 0.37
ACGTcount: A:0.35, C:0.17, G:0.28, T:0.21
Consensus pattern (68 bp):
ACAAGAGAGCTACGAGAGATAAATGTAGCTAGGTCACATGCGTGATTCAAGGGAAGGACACCATG
TAG
Found at i:69218861 original size:48 final size:48
Alignment explanation
Indices: 69218790--69219073 Score: 469
Period size: 48 Copynumber: 5.9 Consensus size: 48
69218780 CAAGATAAAT
* * * *
69218790 ATATATATGTGTGGTAAAGCCGAATGGCTAGTGTGATATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
69218838 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
69218886 ATATTTATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
69218934 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
69218982 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
69219030 ATATGTATATTTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
69219074 GGAAATGTGT
Statistics
Matches: 222, Mismatches: 14, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 222 1.00
ACGTcount: A:0.35, C:0.06, G:0.26, T:0.32
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
Found at i:69219270 original size:37 final size:37
Alignment explanation
Indices: 69219220--69219322 Score: 170
Period size: 37 Copynumber: 2.8 Consensus size: 37
69219210 GGAAATATAT
*
69219220 TCCGGGTAAGACCCGATGACTATGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
69219257 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
69219294 TTCGGGTAAGACCCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
69219323 GGACTATTCG
Statistics
Matches: 62, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 62 1.00
ACGTcount: A:0.23, C:0.18, G:0.32, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:69220327 original size:27 final size:26
Alignment explanation
Indices: 69220297--69220386 Score: 108
Period size: 27 Copynumber: 3.3 Consensus size: 26
69220287 TTTAGTTTAC
69220297 TAAAATTATCGAAATACCCTCGATTTG
1 TAAAATTA-CGAAATACCCTCGATTTG
* *
69220324 TAAAATTACTGAAATACCTTCGACTTG
1 TAAAATTAC-GAAATACCCTCGATTTG
* *
69220351 TAAAATTACCAAAGTACCCTCGATTTA
1 TAAAATTACGAAA-TACCCTCGATTTG
*
69220378 TAGAATTAC
1 TAAAATTAC
69220387 TGTTTTACCC
Statistics
Matches: 54, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
26 4 0.07
27 50 0.93
ACGTcount: A:0.39, C:0.19, G:0.10, T:0.32
Consensus pattern (26 bp):
TAAAATTACGAAATACCCTCGATTTG
Found at i:69220395 original size:27 final size:27
Alignment explanation
Indices: 69220365--69220456 Score: 121
Period size: 27 Copynumber: 3.4 Consensus size: 27
69220355 ATTACCAAAG
*
69220365 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
** *
69220392 TACCCTTAATTTACAGAATTATTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* *
69220419 TACCCTCGATTTACAAAATTACCGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
69220446 TACCCTTGATT
1 TACCCTCGATT
69220457 GTGAAATTAC
Statistics
Matches: 55, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 55 1.00
ACGTcount: A:0.27, C:0.21, G:0.09, T:0.43
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACTGTTT
Found at i:69220491 original size:27 final size:27
Alignment explanation
Indices: 69220461--69221007 Score: 716
Period size: 27 Copynumber: 20.3 Consensus size: 27
69220451 TTGATTGTGA
*
69220461 AATTACCGAAATACCCCTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
69220488 AATTACCAAAATACCCTTGTAGGGCAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* ** *
69220515 AACTACCGAAATACCTTTCTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
69220542 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
69220569 AATTACTGAAATACCCCTGTAGGTTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
69220596 AATTACCAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
69220623 AACTACCAAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
69220650 AAATATCGAATTACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
69220677 AACTATCGAAATACCCTTTTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
69220704 AAATACCGAAATACCCCTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
69220731 AATTATCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
69220758 AATTACCAAAATACCCCTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
69220785 AACTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
69220812 AAATACCGAAATACACCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
69220839 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
**
69220866 AATTACTTAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
69220893 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
69220920 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
69220947 AATTACCGAAATACCCCTGTGGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * * * *
69220974 AATTATCGAGATACCCTTTTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
69221001 AATTACC
1 AATTACC
69221008 ATTTTGCCCC
Statistics
Matches: 455, Mismatches: 65, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 455 1.00
ACGTcount: A:0.35, C:0.20, G:0.20, T:0.24
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:69221280 original size:24 final size:25
Alignment explanation
Indices: 69221209--69221278 Score: 97
Period size: 25 Copynumber: 2.8 Consensus size: 25
69221199 AGGAAGTGCT
* * *
69221209 AAAAGGGCTATGCCTCAGTTTA-CTG
1 AAAAGGGCTTTGCCCCAGTTTATC-A
69221234 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTATCA
69221259 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
69221279 ATTAAAAGAG
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
25 40 0.98
26 1 0.02
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTATCA
Found at i:69221291 original size:24 final size:24
Alignment explanation
Indices: 69221208--69221303 Score: 95
Period size: 25 Copynumber: 3.9 Consensus size: 24
69221198 GAGGAAGTGC
*
69221208 TAAAAGGGCTATGCCTCAGTTTACT
1 TAAAAGGGCTATGCCCCAGTTTA-T
* *
69221233 GAAAAGGGCTTTGCCCCAGTTTAT
1 TAAAAGGGCTATGCCCCAGTTTAT
* *
69221257 CAAAAAGGGCTTTGCCCCAG-TTAT
1 -TAAAAGGGCTATGCCCCAGTTTAT
*
69221281 TAAAAGAGGCTAGGCCTCCAGTT
1 TAAAAG-GGCTATGCC-CCAGTT
69221304 ATATAATAAA
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
23 5 0.08
24 12 0.20
25 42 0.70
26 1 0.02
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.27
Consensus pattern (24 bp):
TAAAAGGGCTATGCCCCAGTTTAT
Found at i:69221302 original size:50 final size:50
Alignment explanation
Indices: 69221209--69221303 Score: 113
Period size: 50 Copynumber: 1.9 Consensus size: 50
69221199 AGGAAGTGCT
* **
69221209 AAAAGGGCTATGCCTCAGTTTACTGAAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTATGCCCCAGTTTACTGAAAAGGGCTAGGCCCCAGTTTATCA
* *
69221259 AAAAGGGCTTTGCCCCAG-TTA-TTAAAAGAGGCTAGGCCTCCAGTT
1 AAAAGGGCTATGCCCCAGTTTACTGAAAAG-GGCTAGGCC-CCAGTT
69221304 ATATAATAAA
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
48 6 0.16
49 10 0.26
50 22 0.58
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.26
Consensus pattern (50 bp):
AAAAGGGCTATGCCCCAGTTTACTGAAAAGGGCTAGGCCCCAGTTTATCA
Found at i:69227616 original size:29 final size:29
Alignment explanation
Indices: 69227574--69227631 Score: 107
Period size: 29 Copynumber: 2.0 Consensus size: 29
69227564 ATCCAAGAGG
*
69227574 TTGAATTTGGTATTGAGTTAGTGTCTGGA
1 TTGAATTTGGTATTGAGTTAGTGCCTGGA
69227603 TTGAATTTGGTATTGAGTTAGTGCCTGGA
1 TTGAATTTGGTATTGAGTTAGTGCCTGGA
69227632 ACAACTCAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.21, C:0.05, G:0.31, T:0.43
Consensus pattern (29 bp):
TTGAATTTGGTATTGAGTTAGTGCCTGGA
Found at i:69231388 original size:94 final size:94
Alignment explanation
Indices: 69231237--69231413 Score: 232
Period size: 94 Copynumber: 1.9 Consensus size: 94
69231227 AGCATATCTG
* * ** *
69231237 TACCGATGCCGTGTCCCAGACATGGTCTTACATTGACTTATGTCTCGAGGCCGATGCATGTCCCA
1 TACCGATGCCGTGTCCCAGACATGGCCTTACACTGACTTATGAATCGAGGCCAATGCATGTCCCA
*
69231302 AACATGTCTTGCACTAGCACTCGTCTCAA
66 AACATGTCTTACACTAGCACTCGTCTCAA
* * *
69231331 TACCGATGCCGTGTCCCAGACATGGCCTTACACTGGCTCTCAT-AAT-GTGGCTAATGCATGTCC
1 TACCGATGCCGTGTCCCAGACATGGCCTTACACTGACT-T-ATGAATCGAGGCCAATGCATGTCC
*
69231394 CAGACATGTCTTACACTAGC
64 CAAACATGTCTTACACTAGC
69231414 TCACAAAAAC
Statistics
Matches: 71, Mismatches: 10, Indels: 4
0.84 0.12 0.05
Matches are distributed among these distances:
94 67 0.94
95 2 0.03
96 2 0.03
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.27
Consensus pattern (94 bp):
TACCGATGCCGTGTCCCAGACATGGCCTTACACTGACTTATGAATCGAGGCCAATGCATGTCCCA
AACATGTCTTACACTAGCACTCGTCTCAA
Found at i:69233531 original size:46 final size:45
Alignment explanation
Indices: 69233464--69233638 Score: 154
Period size: 46 Copynumber: 3.8 Consensus size: 45
69233454 TGTAACCCGC
** * *
69233464 CCATAAGTGAACTTAGACTCAACTCAATGAGCTCGGGCGTTCACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTC-CAT
* **
69233510 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTT-GTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--GCATTCCAT
* *** * * * *
69233556 ACATTTCTCGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCAG
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGGCATTC-CAT
*
69233603 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
69233639 ATGCCCAAAT
Statistics
Matches: 102, Mismatches: 22, Indels: 10
0.76 0.16 0.07
Matches are distributed among these distances:
45 3 0.03
46 65 0.64
47 30 0.29
48 4 0.04
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCCAT
Found at i:69236035 original size:15 final size:15
Alignment explanation
Indices: 69236006--69236055 Score: 66
Period size: 15 Copynumber: 3.4 Consensus size: 15
69235996 CAAAGATAAC
*
69236006 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
69236020 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
69236035 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
69236050 AAGAAA
1 AAGAAA
69236056 CCCAAGATAC
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
14 8 0.26
15 23 0.74
ACGTcount: A:0.60, C:0.12, G:0.18, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:69236064 original size:15 final size:15
Alignment explanation
Indices: 69236017--69236064 Score: 53
Period size: 15 Copynumber: 3.2 Consensus size: 15
69236007 AGAAAACCGA
69236017 ATAAAGAAATCC-AG
1 ATAAAGAAATCCAAG
* *
69236031 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
69236047 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
69236062 ATA
1 ATA
69236065 CGATACTATG
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
15 26 0.96
16 1 0.04
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:69239116 original size:93 final size:93
Alignment explanation
Indices: 69239002--69239173 Score: 278
Period size: 93 Copynumber: 1.8 Consensus size: 93
69238992 GCCCATAAGT
*
69239002 GAACTCAGACTCAACTCAACGA-TCTCGGGA-GTTCGCATCCATAAGTGAACTCGGACTCAACTC
1 GAACTCAGACTCAACTCAACGAGT-TC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
69239065 AACGAGCTCGGATGCCTTGTTACATCTCTC
64 AACGAGCTCGGATGCCTTGTTACATCTCTC
69239095 GAACTC-GAACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCAG-ACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
69239159 ACGAGTTCGGATGCC
65 ACGAGCTCGGATGCC
69239174 CAAATATCCT
Statistics
Matches: 74, Mismatches: 2, Indels: 6
0.90 0.02 0.07
Matches are distributed among these distances:
92 4 0.05
93 69 0.93
94 1 0.01
ACGTcount: A:0.28, C:0.30, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTTGTTACATCTCTC
Found at i:69239163 original size:46 final size:46
Alignment explanation
Indices: 69238994--69239169 Score: 189
Period size: 46 Copynumber: 3.8 Consensus size: 46
69238984 TGTAACCCGC
* *
69238994 CCATAAGTGAACTCAGACTCAACTCAACGA-TCTCGGGA-GTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGT-TC-GGACATTCGCAT
* * *
69239040 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTT-G-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA--CATTCGCAT
* *** *
69239086 ACATCTCTCGAACTCGAACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
69239133 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
69239170 TGCCCAAATA
Statistics
Matches: 106, Mismatches: 17, Indels: 14
0.77 0.12 0.10
Matches are distributed among these distances:
45 6 0.06
46 65 0.61
47 33 0.31
48 2 0.02
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:69247642 original size:42 final size:41
Alignment explanation
Indices: 69247575--69247710 Score: 139
Period size: 44 Copynumber: 3.2 Consensus size: 41
69247565 TACATGTAAC
* *
69247575 CAAATATCGATGCCACTGTCCCAGACAGGGTCTTACACAAAAT
1 CAAATAT-GATGCCA-TGTCCCAGACATGGCCTTACACAAAAT
* **
69247618 CAAATATGATGCCGATGTCTCAGACATGGCCTTACATGTAAAT
1 CAAATATGATGCC-ATGTCCCAGACATGGCCTTACA-CAAAAT
*
69247661 CATAAGT-TGATGCCAATGTCCCAGACATGGCCTTACACGAAAT
1 CA-AA-TATGATGCC-ATGTCCCAGACATGGCCTTACACAAAAT
*
69247704 CACATAT
1 CAAATAT
69247711 TGGATCCTAT
Statistics
Matches: 78, Mismatches: 10, Indels: 11
0.79 0.10 0.11
Matches are distributed among these distances:
41 1 0.01
42 26 0.33
43 20 0.26
44 30 0.38
45 1 0.01
ACGTcount: A:0.34, C:0.25, G:0.17, T:0.24
Consensus pattern (41 bp):
CAAATATGATGCCATGTCCCAGACATGGCCTTACACAAAAT
Found at i:69247723 original size:43 final size:43
Alignment explanation
Indices: 69247541--69247712 Score: 168
Period size: 43 Copynumber: 4.0 Consensus size: 43
69247531 AGCTCATACA
* * * * * * *
69247541 ATGCCAACGTCCCAGACGTGGTCTTACATGTAACCAAATATCG
1 ATGCCAATGTCCCAGACATGGCCTTACACGAAATCAAATATTG
* * * *
69247584 ATGCCACTGTCCCAGACAGGGTCTTACACAAAATCAAATA-TG
1 ATGCCAATGTCCCAGACATGGCCTTACACGAAATCAAATATTG
* * * *
69247626 ATGCCGATGTCTCAGACATGGCCTTACATGTAAATCATAA-GTTG
1 ATGCCAATGTCCCAGACATGGCCTTACACG-AAATCA-AATATTG
*
69247670 ATGCCAATGTCCCAGACATGGCCTTACACGAAATCACATATTG
1 ATGCCAATGTCCCAGACATGGCCTTACACGAAATCAAATATTG
69247713 GATCCTATGT
Statistics
Matches: 103, Mismatches: 22, Indels: 8
0.77 0.17 0.06
Matches are distributed among these distances:
42 25 0.24
43 47 0.46
44 31 0.30
ACGTcount: A:0.32, C:0.26, G:0.18, T:0.24
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATGGCCTTACACGAAATCAAATATTG
Found at i:69251805 original size:20 final size:20
Alignment explanation
Indices: 69251780--69251825 Score: 83
Period size: 20 Copynumber: 2.3 Consensus size: 20
69251770 ATGGAAATTC
*
69251780 ATAAAAAGGTGAAATTTTCT
1 ATAAAAAGGTGAAATTTGCT
69251800 ATAAAAAGGTGAAATTTGCT
1 ATAAAAAGGTGAAATTTGCT
69251820 ATAAAA
1 ATAAAA
69251826 CAGTATCATA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.50, C:0.04, G:0.15, T:0.30
Consensus pattern (20 bp):
ATAAAAAGGTGAAATTTGCT
Found at i:69273787 original size:8 final size:8
Alignment explanation
Indices: 69273774--69273798 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
69273764 ATATAGACTA
69273774 AATAAAAT
1 AATAAAAT
69273782 AATAAAAT
1 AATAAAAT
69273790 AATAAAAT
1 AATAAAAT
69273798 A
1 A
69273799 TCTTATGAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (8 bp):
AATAAAAT
Found at i:69274363 original size:47 final size:47
Alignment explanation
Indices: 69274294--69274383 Score: 171
Period size: 47 Copynumber: 1.9 Consensus size: 47
69274284 ACACCGAATA
69274294 TGAGGTTGTCAGGCTAATGCCGAATCCTCCTTCTCCTTGTTGCAATG
1 TGAGGTTGTCAGGCTAATGCCGAATCCTCCTTCTCCTTGTTGCAATG
*
69274341 TGAGGTTGTTAGGCTAATGCCGAATCCTCCTTCTCCTTGTTGC
1 TGAGGTTGTCAGGCTAATGCCGAATCCTCCTTCTCCTTGTTGC
69274384 TGGAAACCCT
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 42 1.00
ACGTcount: A:0.16, C:0.26, G:0.23, T:0.36
Consensus pattern (47 bp):
TGAGGTTGTCAGGCTAATGCCGAATCCTCCTTCTCCTTGTTGCAATG
Found at i:69275192 original size:27 final size:27
Alignment explanation
Indices: 69275162--69275215 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
69275152 ATTGGGCCCA
69275162 TAATAGGCAAAAATGATAATTGATGCT
1 TAATAGGCAAAAATGATAATTGATGCT
69275189 TAATAGGCAAAAATGATAATTGATGCT
1 TAATAGGCAAAAATGATAATTGATGCT
69275216 ATGTCATGAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.44, C:0.07, G:0.19, T:0.30
Consensus pattern (27 bp):
TAATAGGCAAAAATGATAATTGATGCT
Found at i:69275325 original size:28 final size:28
Alignment explanation
Indices: 69275294--69275348 Score: 76
Period size: 28 Copynumber: 2.0 Consensus size: 28
69275284 ATTTCAGCCT
*
69275294 AATGGGCCACAT-AAAGGTGATTGGGCTA
1 AATGGGCCACATGAAA-GAGATTGGGCTA
*
69275322 AATGGGCCATATGAAAGAGATTGGGCT
1 AATGGGCCACATGAAAGAGATTGGGCT
69275349 TAGTGGGCTA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 21 0.88
29 3 0.12
ACGTcount: A:0.33, C:0.13, G:0.33, T:0.22
Consensus pattern (28 bp):
AATGGGCCACATGAAAGAGATTGGGCTA
Found at i:69279613 original size:23 final size:22
Alignment explanation
Indices: 69279562--69279613 Score: 54
Period size: 23 Copynumber: 2.3 Consensus size: 22
69279552 CCTCGTCTTT
*
69279562 TTCTTTTGTTTCTTTTTCTAAC
1 TTCTTTTCTTTCTTTTTCTAAC
69279584 -TCATTTTCTCTTCTTTCTTC-AAC
1 TTC-TTTTCT-TTCTTT-TTCTAAC
69279607 TTCTTTT
1 TTCTTTT
69279614 TCAATTTCTT
Statistics
Matches: 25, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 2 0.08
22 5 0.20
23 13 0.52
24 5 0.20
ACGTcount: A:0.10, C:0.23, G:0.02, T:0.65
Consensus pattern (22 bp):
TTCTTTTCTTTCTTTTTCTAAC
Found at i:69279622 original size:12 final size:12
Alignment explanation
Indices: 69279571--69279625 Score: 51
Period size: 12 Copynumber: 4.6 Consensus size: 12
69279561 TTTCTTTTGT
69279571 TTCTTTTTCTAAC
1 TTCTTTTTC-AAC
* *
69279584 -TCATTTTC-TC
1 TTCTTTTTCAAC
69279594 TTCTTTCTTCAAC
1 TTCTTT-TTCAAC
*
69279607 TTCTTTTTCAAT
1 TTCTTTTTCAAC
69279619 TTCTTTT
1 TTCTTTT
69279626 CTGTTTCACA
Statistics
Matches: 34, Mismatches: 5, Indels: 7
0.74 0.11 0.15
Matches are distributed among these distances:
10 1 0.03
11 4 0.12
12 22 0.65
13 7 0.21
ACGTcount: A:0.13, C:0.24, G:0.00, T:0.64
Consensus pattern (12 bp):
TTCTTTTTCAAC
Found at i:69279632 original size:17 final size:18
Alignment explanation
Indices: 69279607--69279644 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
69279597 TTTCTTCAAC
* *
69279607 TTCTTTTTCA-ATTTCTT
1 TTCTGTTTCACATTCCTT
69279624 TTCTGTTTCACATTCCTT
1 TTCTGTTTCACATTCCTT
69279642 TTC
1 TTC
69279645 ACTCTCAATC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 9 0.50
18 9 0.50
ACGTcount: A:0.11, C:0.24, G:0.03, T:0.63
Consensus pattern (18 bp):
TTCTGTTTCACATTCCTT
Found at i:69284373 original size:27 final size:27
Alignment explanation
Indices: 69284342--69284520 Score: 171
Period size: 27 Copynumber: 6.6 Consensus size: 27
69284332 ATATTGAGCC
* * **
69284342 CGCACACTCAGTGCTATATAATCATCT
1 CGCACACTTAGTGCTACATAATCAAAT
* *
69284369 TGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAAAT
*
69284396 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATCAAA-T
** ** *
69284424 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAAAT
* **
69284451 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAAAT
* * *
69284478 CGCACACTTAGTGCAACATAGTCATAT
1 CGCACACTTAGTGCTACATAATCAAAT
69284505 CGCACACTTAGTGCTA
1 CGCACACTTAGTGCTA
69284521 TACAATTTAA
Statistics
Matches: 129, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
27 105 0.81
28 24 0.19
ACGTcount: A:0.29, C:0.27, G:0.15, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAAAT
Found at i:69285084 original size:13 final size:13
Alignment explanation
Indices: 69285066--69285090 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
69285056 TACTAAATTT
69285066 TCATGGATTCAAG
1 TCATGGATTCAAG
69285079 TCATGGATTCAA
1 TCATGGATTCAA
69285091 TATACCATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (13 bp):
TCATGGATTCAAG
Found at i:69286714 original size:27 final size:26
Alignment explanation
Indices: 69286672--69286773 Score: 123
Period size: 27 Copynumber: 3.8 Consensus size: 26
69286662 GCTCAGTTAT
* *
69286672 CAGATATTGTGACAGAGTCACCAGATA
1 CAGATATTGTGGCAGAGCCACCAGA-A
*
69286699 CAGATATTGTGGCAGAGCCACCGGAA
1 CAGATATTGTGGCAGAGCCACCAGAA
*
69286725 CAGATATTTGTGGCATAGCCACCAGAAA
1 CAGATA-TTGTGGCAGAGCCACCAG-AA
* *
69286753 CAGATAATGTGGCAAAGCCAC
1 CAGATATTGTGGCAGAGCCAC
69286774 TTAACAGAAT
Statistics
Matches: 66, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
26 7 0.11
27 51 0.77
28 8 0.12
ACGTcount: A:0.35, C:0.22, G:0.25, T:0.19
Consensus pattern (26 bp):
CAGATATTGTGGCAGAGCCACCAGAA
Found at i:69286756 original size:54 final size:53
Alignment explanation
Indices: 69286672--69286773 Score: 141
Period size: 54 Copynumber: 1.9 Consensus size: 53
69286662 GCTCAGTTAT
* * * *
69286672 CAGATATTGTGACAGAGTCACCAGATACAGATATTGTGGCAGAGCCACCGGAA
1 CAGATATTGTGACAGAGCCACCAGAAACAGATAATGTGGCAAAGCCACCGGAA
* *
69286725 CAGATATTTGTGGCATAGCCACCAGAAACAGATAATGTGGCAAAGCCAC
1 CAGATA-TTGTGACAGAGCCACCAGAAACAGATAATGTGGCAAAGCCAC
69286774 TTAACAGAAT
Statistics
Matches: 42, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
53 6 0.14
54 36 0.86
ACGTcount: A:0.35, C:0.22, G:0.25, T:0.19
Consensus pattern (53 bp):
CAGATATTGTGACAGAGCCACCAGAAACAGATAATGTGGCAAAGCCACCGGAA
Found at i:69286960 original size:22 final size:22
Alignment explanation
Indices: 69286932--69286993 Score: 65
Period size: 22 Copynumber: 2.8 Consensus size: 22
69286922 ACAAATACGT
69286932 TTGGCACACAACCATAAT-TAGG
1 TTGGCACA-AACCATAATGTAGG
*
69286954 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACA-AACCATAATGTAGG
*
69286976 TTGACACAAAGCCATAAT
1 TTGGCACAAA-CCATAAT
69286994 CAGAAAGCTT
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
21 3 0.09
22 28 0.85
23 2 0.06
ACGTcount: A:0.35, C:0.21, G:0.21, T:0.23
Consensus pattern (22 bp):
TTGGCACAAACCATAATGTAGG
Found at i:69289649 original size:47 final size:47
Alignment explanation
Indices: 69289592--69289895 Score: 425
Period size: 47 Copynumber: 6.4 Consensus size: 47
69289582 ATTGATGTAC
* * *
69289592 AAGTATATATATGTGATAGGGCCGAGTGGCCAATGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
*
69289639 AAGTATATATATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
1 AAGTGTATATAT--GTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* *
69289688 ACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
1 A-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* *
69289735 ACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
1 A-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* *
69289782 ACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGA
1 A-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* *
69289829 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGG
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
*
69289876 AAGTGTATAAATGTGATAAG
1 AAGTGTATATATGTGATAAG
69289896 TCCCGAAGGG
Statistics
Matches: 239, Mismatches: 14, Indels: 8
0.92 0.05 0.03
Matches are distributed among these distances:
46 1 0.00
47 197 0.82
49 40 0.17
50 1 0.00
ACGTcount: A:0.33, C:0.10, G:0.31, T:0.27
Consensus pattern (47 bp):
AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
Found at i:69289773 original size:22 final size:22
Alignment explanation
Indices: 69289746--69289867 Score: 61
Period size: 22 Copynumber: 5.3 Consensus size: 22
69289736 CATGTGTATG
69289746 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* * *
69289768 TGTGATGAATG-TGAACAT-GCATATA
1 TGTGAT-AAGGCCG-A-ATGGC-CA-A
*
69289793 TGAGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* * ***
69289815 TGTGATGAATG-TGAAAGTGTATATA
1 TGTGAT-AAGGCCG-AA-TGGCCA-A
69289840 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
69289862 TGTGAT
1 TGTGAT
69289868 GGATGTGGAA
Statistics
Matches: 70, Mismatches: 18, Indels: 24
0.62 0.16 0.21
Matches are distributed among these distances:
22 21 0.30
23 17 0.24
24 17 0.24
25 15 0.21
ACGTcount: A:0.34, C:0.11, G:0.30, T:0.25
Consensus pattern (22 bp):
TGTGATAAGGCCGAATGGCCAA
Found at i:69291938 original size:27 final size:27
Alignment explanation
Indices: 69291881--69291938 Score: 62
Period size: 27 Copynumber: 2.1 Consensus size: 27
69291871 ACTTGGCAAT
* **
69291881 AAGGGCAAAATAGTCATTTAACACCTT
1 AAGGGCAAAATAGTAATTTAACACCAC
* * *
69291908 AAGGGCAAAATGGTAATTTTACCCCAC
1 AAGGGCAAAATAGTAATTTAACACCAC
69291935 AAGG
1 AAGG
69291939 TATCTCGGTA
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.40, C:0.19, G:0.19, T:0.22
Consensus pattern (27 bp):
AAGGGCAAAATAGTAATTTAACACCAC
Found at i:69291996 original size:27 final size:27
Alignment explanation
Indices: 69291919--69292085 Score: 176
Period size: 27 Copynumber: 6.3 Consensus size: 27
69291909 AGGGCAAAAT
* * * *
69291919 GGTAATTTTACCCCACA-AGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
69291945 GGTAATTCCACCCT-CAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
69291971 AGTAATTCTACTCTACAGAGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
69291998 GGTAACTCTACCCTATAGGGGTATTGC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
69292025 GATAATTCTACCCTATAGGGATATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
69292052 GGTAATTCTACCCTACAGGGGTATTCC
1 GGTAATTCTACCCTACAGGGGTATTTC
69292079 GGTAATT
1 GGTAATT
69292086 TTGTAAATCG
Statistics
Matches: 114, Mismatches: 25, Indels: 3
0.80 0.18 0.02
Matches are distributed among these distances:
25 2 0.02
26 28 0.25
27 84 0.74
ACGTcount: A:0.25, C:0.22, G:0.20, T:0.34
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:69292100 original size:27 final size:26
Alignment explanation
Indices: 69292070--69292329 Score: 125
Period size: 27 Copynumber: 9.6 Consensus size: 26
69292060 TACCCTACAG
* *
69292070 GGGTATTCCGGTAATTTTGTAAATCGA
1 GGGTATT-TGGTAATTTTATAAATCGA
* * *
69292097 GGGTATAATGGTAATTCTATAAATCAA
1 GGGTAT-TTGGTAATTTTATAAATCGA
* *
69292124 GGGTACTTTGGTAATTTTACAAGTCGA
1 GGGTA-TTTGGTAATTTTATAAATCGA
** * **
69292151 GGGTATTTCAATAATTTTACAGGTCGA
1 GGGTATTT-GGTAATTTTATAAATCGA
* * *
69292178 GGGTATTTTAGTAATTTCACAAATC-A
1 GGGTA-TTTGGTAATTTTATAAATCGA
* *
69292204 GGGGTATTTTGGTAATTTTACAAA-CTA
1 -GGGTA-TTTGGTAATTTTATAAATCGA
* * *
69292231 GGGGTATTTTGATAATTTTACAAA-CCA
1 -GGGTA-TTTGGTAATTTTATAAATCGA
* *
69292258 GGGGTATTCTGGTGATTTTATAAA-CCA
1 -GGGTATT-TGGTAATTTTATAAATCGA
* * *
69292285 GGGGTATTTTAGTAATTTTACAAA-CTA
1 -GGGTA-TTTGGTAATTTTATAAATCGA
69292312 GGGGTATTTTGGTAATTT
1 -GGGTA-TTTGGTAATTT
69292330 GGTAAACTAA
Statistics
Matches: 196, Mismatches: 29, Indels: 16
0.81 0.12 0.07
Matches are distributed among these distances:
26 7 0.04
27 183 0.93
28 6 0.03
ACGTcount: A:0.30, C:0.09, G:0.22, T:0.38
Consensus pattern (26 bp):
GGGTATTTGGTAATTTTATAAATCGA
Found at i:69292155 original size:81 final size:81
Alignment explanation
Indices: 69292070--69292226 Score: 181
Period size: 81 Copynumber: 1.9 Consensus size: 81
69292060 TACCCTACAG
** ** * *
69292070 GGGTATTCCGGTAATTTTGTAAATCGAGGGTATAATGGTAA-TTCTATAAATCAAGGGTACTTTG
1 GGGTATTCCAATAATTTTACAAATCGAGGGTATAATAGTAATTTC-ACAAATCAAGGGTACTTTG
69292134 GTAATTTTACAAGTCGA
65 GTAATTTTACAAGTCGA
* ** ** * *
69292151 GGGTATTTCAATAATTTTACAGGTCGAGGGTATTTTAGTAATTTCACAAATCAGGGGTATTTTGG
1 GGGTATTCCAATAATTTTACAAATCGAGGGTATAATAGTAATTTCACAAATCAAGGGTACTTTGG
69292216 TAATTTTACAA
66 TAATTTTACAA
69292227 ACTAGGGGTA
Statistics
Matches: 62, Mismatches: 13, Indels: 2
0.81 0.17 0.03
Matches are distributed among these distances:
81 59 0.95
82 3 0.05
ACGTcount: A:0.31, C:0.10, G:0.22, T:0.38
Consensus pattern (81 bp):
GGGTATTCCAATAATTTTACAAATCGAGGGTATAATAGTAATTTCACAAATCAAGGGTACTTTGG
TAATTTTACAAGTCGA
Found at i:69292236 original size:81 final size:81
Alignment explanation
Indices: 69292117--69292320 Score: 232
Period size: 81 Copynumber: 2.5 Consensus size: 81
69292107 GTAATTCTAT
* * * * ***
69292117 AAATCAAGGGTACTTTGGTAATTTTAC-AAGTCGAGGGTATTTCAATAATTTTACAGGTC-GAGG
1 AAATCAGGGGTATTTTGGTAATTTTACAAACTAG-GGGTATTTCAATAATTTTACAAACCAG-GG
*
69292180 GTATTTTAGTAATTTCAC
64 GTATTCTAGTAATTTCAC
**
69292198 AAATCAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGATAATTTTACAAACCAGGGGT
1 AAATCAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTCAATAATTTTACAAACCAGGGGT
* * * *
69292263 ATTCTGGTGATTTTAT
66 ATTCTAGTAATTTCAC
* *
69292279 AAACCAGGGGTATTTTAGTAATTTTACAAACTAGGGGTATTT
1 AAATCAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTT
69292321 TGGTAATTTG
Statistics
Matches: 105, Mismatches: 16, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
81 100 0.95
82 5 0.05
ACGTcount: A:0.31, C:0.10, G:0.22, T:0.38
Consensus pattern (81 bp):
AAATCAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTCAATAATTTTACAAACCAGGGGT
ATTCTAGTAATTTCAC
Found at i:69292338 original size:27 final size:27
Alignment explanation
Indices: 69292178--69292329 Score: 207
Period size: 27 Copynumber: 5.6 Consensus size: 27
69292168 TACAGGTCGA
* *
69292178 GGGTATTTTAGTAATTTCACAAA-TCAG
1 GGGTATTTTGGTAATTTTACAAACT-AG
69292205 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
* *
69292232 GGGTATTTTGATAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACTAG
* * * *
69292259 GGGTATTCTGGTGATTTTATAAACCAG
1 GGGTATTTTGGTAATTTTACAAACTAG
*
69292286 GGGTATTTTAGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
69292313 GGGTATTTTGGTAATTT
1 GGGTATTTTGGTAATTT
69292330 GGTAAACTAA
Statistics
Matches: 110, Mismatches: 14, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
27 109 0.99
28 1 0.01
ACGTcount: A:0.30, C:0.09, G:0.22, T:0.40
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACTAG
Found at i:69292782 original size:13 final size:13
Alignment explanation
Indices: 69292764--69292788 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
69292754 GTTAGCTTCC
69292764 CGATGTGGGATCT
1 CGATGTGGGATCT
69292777 CGATGTGGGATC
1 CGATGTGGGATC
69292789 CCTCCATCAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.16, G:0.40, T:0.28
Consensus pattern (13 bp):
CGATGTGGGATCT
Found at i:69294349 original size:30 final size:30
Alignment explanation
Indices: 69294303--69294398 Score: 111
Period size: 30 Copynumber: 3.2 Consensus size: 30
69294293 TATTAGAACT
* * *
69294303 AGAATCAGAATCAGAATCAAAATTAGGTGAC
1 AGAATCA-AATTAGAATCAAAATCAGGTAAC
**
69294334 AGAATCAAATTAGAATCAGTATCAGGTAAC
1 AGAATCAAATTAGAATCAAAATCAGGTAAC
* **
69294364 AAAATCAAATTAGAATCAGTATCAGGTAAC
1 AGAATCAAATTAGAATCAAAATCAGGTAAC
69294394 AGAAT
1 AGAAT
69294399 AAAAAATCAG
Statistics
Matches: 58, Mismatches: 7, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
30 51 0.88
31 7 0.12
ACGTcount: A:0.49, C:0.12, G:0.17, T:0.22
Consensus pattern (30 bp):
AGAATCAAATTAGAATCAAAATCAGGTAAC
Found at i:69294579 original size:27 final size:26
Alignment explanation
Indices: 69294548--69294676 Score: 150
Period size: 27 Copynumber: 4.8 Consensus size: 26
69294538 ACTCAGTTAT
* *
69294548 CAGATATTGTGACAGAGTCACCAAATA
1 CAGATATTGTGGCAGAGCCACCAAA-A
* *
69294575 TAGATATTGTGGCAGAGCCACCAGAA
1 CAGATATTGTGGCAGAGCCACCAAAA
*
69294601 CAGATATTTGTGGCAGAGCCACCAGAA
1 CAGATA-TTGTGGCAGAGCCACCAAAA
*
69294628 CAGATATTTGTGGCATAGCCACCAGAAA
1 CAGATA-TTGTGGCAGAGCCACCA-AAA
* *
69294656 CAGATAATGTGGCAAAGCCAC
1 CAGATATTGTGGCAGAGCCAC
69294677 TTAACAGAAT
Statistics
Matches: 91, Mismatches: 9, Indels: 4
0.88 0.09 0.04
Matches are distributed among these distances:
26 6 0.07
27 77 0.85
28 8 0.09
ACGTcount: A:0.36, C:0.21, G:0.23, T:0.19
Consensus pattern (26 bp):
CAGATATTGTGGCAGAGCCACCAAAA
Found at i:69294863 original size:22 final size:22
Alignment explanation
Indices: 69294835--69294899 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
69294825 GCAAATACGT
*
69294835 TTGGCACACAGCCATAATCAGG
1 TTGGCACAAAGCCATAATCAGG
* *
69294857 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAGG
*
69294879 TTGACACAAAGCCATAATCAG
1 TTGGCACAAAGCCATAATCAG
69294900 AAGGCTTTAA
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 2 0.06
22 32 0.89
23 2 0.06
ACGTcount: A:0.34, C:0.23, G:0.23, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:69295384 original size:27 final size:27
Alignment explanation
Indices: 69295326--69295547 Score: 232
Period size: 27 Copynumber: 8.3 Consensus size: 27
69295316 GGGGCAAAAT
* * * *
69295326 GGTAATTTTACCCCACA-AGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
69295352 GGTAATTCCACCCTACAGGGGTGTTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
69295379 AGTAATTCTACCCTACAGGGGTGTTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
69295406 AGTAGTTCTACCCTACAGCGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
69295433 GGTAATTCTACCTTACAGGTGTATTGT-
1 GGTAATTCTACCCTACAGGGGTATT-TC
* * *
69295460 GATAATTCTACCCTATAGGGATATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
69295487 GGTAATTCTACCCTAGAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
69295514 GGTAATTCTACCCTACAGGGGTATTCC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
69295541 AGTAATT
1 GGTAATT
69295548 TTGTAAATCA
Statistics
Matches: 164, Mismatches: 29, Indels: 5
0.83 0.15 0.03
Matches are distributed among these distances:
26 15 0.09
27 148 0.90
28 1 0.01
ACGTcount: A:0.24, C:0.21, G:0.21, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:69295689 original size:27 final size:27
Alignment explanation
Indices: 69295579--69295791 Score: 214
Period size: 27 Copynumber: 7.9 Consensus size: 27
69295569 GTAATTCTGT
* *
69295579 AAATCAAGGGTACTTTGGTAATTTTAC
1 AAATCAGGGGTATTTTGGTAATTTTAC
* * ***
69295606 AAGTC-GAGGATATTTCAATAATTTTAC
1 AAATCAG-GGGTATTTTGGTAATTTTAC
** * * *
69295633 AGGTCAAGGGTATTTTAGTAATTTCAC
1 AAATCAGGGGTATTTTGGTAATTTTAC
69295660 AAATCAGGGGTATTTTGGTAATTTTAC
1 AAATCAGGGGTATTTTGGTAATTTTAC
*
69295687 AAA-CTAGGGGTATTTTGATAATTTTAC
1 AAATC-AGGGGTATTTTGGTAATTTTAC
* * *
69295714 AAACCAGGGGTATTTTGGTGATTTTAT
1 AAATCAGGGGTATTTTGGTAATTTTAC
* * *
69295741 AAACCAAGGGTATTTTAGTAATTTTAC
1 AAATCAGGGGTATTTTGGTAATTTTAC
*
69295768 AAACCAGGGGTATTTTGGTAATTT
1 AAATCAGGGGTATTTTGGTAATTT
69295792 GGTAAACTAG
Statistics
Matches: 154, Mismatches: 28, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
26 1 0.01
27 152 0.99
28 1 0.01
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.38
Consensus pattern (27 bp):
AAATCAGGGGTATTTTGGTAATTTTAC
Found at i:69295783 original size:81 final size:81
Alignment explanation
Indices: 69295578--69295791 Score: 241
Period size: 81 Copynumber: 2.6 Consensus size: 81
69295568 GGTAATTCTG
* ** * ** ***
69295578 TAAATCAAGGGTACTTTGGTAATTTTACAAGTC-GAGGATATTTCAATAATTTTACAGGTCAAGG
1 TAAATCAAGGGTATTTTGGTAATTTTACAAACCAG-GGGTATTTTGATAATTTTACAAACCAAGG
69295642 GTATTTTAGTAATTTCA
65 GTATTTTAGTAATTTCA
* * * *
69295659 CAAATCAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGATAATTTTACAAACCAGGGG
1 TAAATCAAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGATAATTTTACAAACCAAGGG
* * *
69295724 TATTTTGGTGATTTTA
66 TATTTTAGTAATTTCA
* * *
69295740 TAAACCAAGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTT
1 TAAATCAAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGATAATTT
69295792 GGTAAACTAG
Statistics
Matches: 110, Mismatches: 22, Indels: 2
0.82 0.16 0.01
Matches are distributed among these distances:
81 109 0.99
82 1 0.01
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.39
Consensus pattern (81 bp):
TAAATCAAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGATAATTTTACAAACCAAGGG
TATTTTAGTAATTTCA
Found at i:69295798 original size:27 final size:27
Alignment explanation
Indices: 69295640--69295791 Score: 223
Period size: 27 Copynumber: 5.6 Consensus size: 27
69295630 TACAGGTCAA
* * *
69295640 GGGTATTTTAGTAATTTCACAAATCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
*
69295667 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
*
69295694 GGGTATTTTGATAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* * *
69295721 GGGTATTTTGGTGATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
*
69295748 GGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
69295775 GGGTATTTTGGTAATTT
1 GGGTATTTTGGTAATTT
69295792 GGTAAACTAG
Statistics
Matches: 110, Mismatches: 15, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 110 1.00
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.40
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACCAG
Found at i:69301059 original size:30 final size:30
Alignment explanation
Indices: 69300993--69301086 Score: 125
Period size: 30 Copynumber: 3.1 Consensus size: 30
69300983 AAATGTGATA
* * * * *
69300993 TTGATAATATAATTTGGTTTAGTTTAATTACG
1 TTGATAATATCA-TTGGGTT-GTTTATTTGCT
69301025 TTGATAATATCATTGGGTTGTTTATTTGCT
1 TTGATAATATCATTGGGTTGTTTATTTGCT
69301055 TTGATAATATCATTGGGTTGTTTATTTGCT
1 TTGATAATATCATTGGGTTGTTTATTTGCT
69301085 TT
1 TT
69301087 TGGCTTACAA
Statistics
Matches: 57, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
30 40 0.70
31 6 0.11
32 11 0.19
ACGTcount: A:0.23, C:0.05, G:0.18, T:0.53
Consensus pattern (30 bp):
TTGATAATATCATTGGGTTGTTTATTTGCT
Found at i:69309262 original size:49 final size:49
Alignment explanation
Indices: 69309209--69309440 Score: 232
Period size: 49 Copynumber: 4.7 Consensus size: 49
69309199 CTGGTACGCA
*
69309209 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGGTACACG
* ** ** * *
69309258 TAGTAGCCTGTACTTAGTACTACACACATGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACC-AATTATCCGGTACACG
* * * ** * *
69309308 TAGTAGCCTGCACTCAGTACTACACACGTGATCGAAGTTATTGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-TTATCCGGTACACG
* * *
69309359 TAATAGCC-GACACTTAGTACTACAAATGCGACCAATTATCCGGTACACG
1 TAGTAGCCTG-CACTTAGTACTACACACGCGACCAATTATCCGGTACACG
* * *
69309408 TAATAGCCTACACTTAGTACTACACACGTGACC
1 TAGTAGCCTGCACTTAGTACTACACACGCGACC
69309441 TCACAATAGA
Statistics
Matches: 145, Mismatches: 33, Indels: 10
0.77 0.18 0.05
Matches are distributed among these distances:
49 67 0.46
50 46 0.32
51 32 0.22
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGGTACACG
Found at i:69309316 original size:50 final size:49
Alignment explanation
Indices: 69309209--69309334 Score: 162
Period size: 50 Copynumber: 2.6 Consensus size: 49
69309199 CTGGTACGCA
** ** *
69309209 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACACGACCAACCATCCGATACACG
* * *
69309258 TAGTAGCCTGTACTTAGTACTACACACATGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACACGACC-AACCATCCGATACACG
*
69309308 TAGTAGCCTGCACTCAGTACTACACAC
1 TAGTAGCCTGCACTTAGTACTACACAC
69309335 GTGATCGAAG
Statistics
Matches: 66, Mismatches: 10, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
49 29 0.44
50 37 0.56
ACGTcount: A:0.30, C:0.29, G:0.16, T:0.25
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACACGACCAACCATCCGATACACG
Found at i:69311155 original size:27 final size:27
Alignment explanation
Indices: 69311123--69311241 Score: 134
Period size: 27 Copynumber: 4.4 Consensus size: 27
69311113 GGGCATAATC
* *
69311123 GTCATTTTACCATATAGGGGTATTACG
1 GTCATTTTACCCTACAGGGGTATTACG
* * *
69311150 GCCATTTTACCCTAC-GAGGGCATTACT
1 GTCATTTTACCCTACAG-GGGTATTACG
* *
69311177 GTCATTTTATCCTACATGGGTATTACG
1 GTCATTTTACCCTACAGGGGTATTACG
*
69311204 GTCATTTTACCCTACAAGGGTATTA-G
1 GTCATTTTACCCTACAGGGGTATTACG
69311230 GATCATTTTACC
1 G-TCATTTTACC
69311242 TATTTTGGGG
Statistics
Matches: 77, Mismatches: 12, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
26 3 0.04
27 74 0.96
ACGTcount: A:0.24, C:0.21, G:0.18, T:0.36
Consensus pattern (27 bp):
GTCATTTTACCCTACAGGGGTATTACG
Found at i:69311198 original size:54 final size:54
Alignment explanation
Indices: 69311123--69311241 Score: 152
Period size: 54 Copynumber: 2.2 Consensus size: 54
69311113 GGGCATAATC
* *
69311123 GTCATTTTACCATATAGGGGTATTACGGCCATTTTACCCTACGAGGGCATTACT
1 GTCATTTTACCATACAGGGGTATTACGGCCATTTTACCCTACAAGGGCATTACT
* * * *
69311177 GTCATTTTATCC-TACATGGGTATTACGGTCATTTTACCCTACAAGGGTATTA-G
1 GTCATTTTA-CCATACAGGGGTATTACGGCCATTTTACCCTACAAGGGCATTACT
69311230 GATCATTTTACC
1 G-TCATTTTACC
69311242 TATTTTGGGG
Statistics
Matches: 57, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
53 3 0.05
54 52 0.91
55 2 0.04
ACGTcount: A:0.24, C:0.21, G:0.18, T:0.36
Consensus pattern (54 bp):
GTCATTTTACCATACAGGGGTATTACGGCCATTTTACCCTACAAGGGCATTACT
Found at i:69316241 original size:30 final size:30
Alignment explanation
Indices: 69316207--69316268 Score: 124
Period size: 30 Copynumber: 2.1 Consensus size: 30
69316197 TTTAATTACG
69316207 TTGATAATATCATTGGGTTGTTTATTTGCT
1 TTGATAATATCATTGGGTTGTTTATTTGCT
69316237 TTGATAATATCATTGGGTTGTTTATTTGCT
1 TTGATAATATCATTGGGTTGTTTATTTGCT
69316267 TT
1 TT
69316269 TGGCTTACTA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.19, C:0.06, G:0.19, T:0.55
Consensus pattern (30 bp):
TTGATAATATCATTGGGTTGTTTATTTGCT
Found at i:69324999 original size:40 final size:40
Alignment explanation
Indices: 69324955--69325216 Score: 319
Period size: 39 Copynumber: 6.7 Consensus size: 40
69324945 GCTCCTCGTT
* *
69324955 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
69324995 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
69325035 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
69325074 CAAATGCCTTCGGG-CTTAGCTCGGAATTAGTATCTCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
69325113 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
69325152 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
69325193 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
69325217 CATCATTCAA
Statistics
Matches: 201, Mismatches: 13, Indels: 17
0.87 0.06 0.07
Matches are distributed among these distances:
38 2 0.01
39 124 0.62
40 64 0.32
41 11 0.05
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:69325200 original size:117 final size:119
Alignment explanation
Indices: 69324955--69325216 Score: 324
Period size: 118 Copynumber: 2.2 Consensus size: 119
69324945 GCTCCTCGTT
* * *
69324955 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCACAAATGCCTTCGGGACTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGGACAAATGCCTTCGGGACTTAACCC
* *
69325018 GGATTTAGTAACTCGCACAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
64 GGAATTAGTAACTCGCACAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTAGCA
* *
69325074 CAAATGCCTTCGGG-CTTAGCTCGGAATTAGTATCTCGGACAAATGCCTTCGGG-CTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGGACAAATGCCTTCGGGACTTAACCCGG
* * *
69325137 AATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGGATATT-GTCA-CTTAGCA
66 AATTAGTAACTCGCACAAATGCCTTCGG-GCTTAGCCCGGA-ATTAGT-ATC-TAGCA
69325193 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
69325217 CATCATTCAA
Statistics
Matches: 125, Mismatches: 11, Indels: 15
0.83 0.07 0.10
Matches are distributed among these distances:
117 46 0.37
118 55 0.44
119 24 0.19
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (119 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGGACAAATGCCTTCGGGACTTAACCCGG
AATTAGTAACTCGCACAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTAGCA
Found at i:69329488 original size:27 final size:26
Alignment explanation
Indices: 69329432--69329488 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
69329422 CAACCTTAAC
* * *
69329432 CCTAGGGGTATATCAGTAATTTTGCT
1 CCTAGGGGTAAATCAGTAATTTTCCA
*
69329458 CCTAGGGGTAAATCTGTAAATTTTCCA
1 CCTAGGGGTAAATCAGT-AATTTTCCA
69329485 CCTA
1 CCTA
69329489 TAAAGGTATT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
26 15 0.58
27 11 0.42
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.35
Consensus pattern (26 bp):
CCTAGGGGTAAATCAGTAATTTTCCA
Found at i:69331747 original size:22 final size:22
Alignment explanation
Indices: 69331722--69331765 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
69331712 CTCTGAGTTA
*
69331722 CCGCTACCCGAGGTTAGCAGAC
1 CCGCTACCCGAAGTTAGCAGAC
*
69331744 CCGCTACCCGAAGTTGGCAGAC
1 CCGCTACCCGAAGTTAGCAGAC
69331766 TTTGCTTCCC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.23, C:0.36, G:0.27, T:0.14
Consensus pattern (22 bp):
CCGCTACCCGAAGTTAGCAGAC
Found at i:69337137 original size:32 final size:33
Alignment explanation
Indices: 69337091--69337154 Score: 87
Period size: 33 Copynumber: 2.0 Consensus size: 33
69337081 AACAGCGGGT
69337091 ACTGGGCCGAAG-CCCTTTTCAGAAT-ACAGTAA
1 ACTGGGCCGAAGCCCCTTTTCA-AATAACAGTAA
**
69337123 ACTGGGCCTTAGCCCCTTTTCAAATAACAGTA
1 ACTGGGCCGAAGCCCCTTTTCAAATAACAGTA
69337155 TGGCCTATAG
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
32 13 0.46
33 15 0.54
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.25
Consensus pattern (33 bp):
ACTGGGCCGAAGCCCCTTTTCAAATAACAGTAA
Found at i:69346077 original size:48 final size:48
Alignment explanation
Indices: 69346025--69346290 Score: 282
Period size: 48 Copynumber: 5.5 Consensus size: 48
69346015 ATCGGTGCCC
* * * *
69346025 ATGCCATGGCCCAGACATGGTCTTACACTACCACACTTATCATA-GCCG
1 ATGCCATGTCCCAAACATGGTCTTACACTAGCACACATATCA-ACGCCG
* * *
69346073 ATGCCATGTCCCAAACATGGTCTTACACTGGCACACAAATCAACACCG
1 ATGCCATGTCCCAAACATGGTCTTACACTAGCACACATATCAACGCCG
* * *
69346121 ATGCCATGTCCCAAACATTGTCTTACACTAGCACAGATATCAACTCCG
1 ATGCCATGTCCCAAACATGGTCTTACACTAGCACACATATCAACGCCG
* * * * * * *
69346169 ATGCGATGTCCTAGACATGGTTTTACATTGGCATACATATCAACGCCG
1 ATGCCATGTCCCAAACATGGTCTTACACTAGCACACATATCAACGCCG
* * * * *
69346217 ATGCCATGTCCCAAACATAGTCTTACACTAGCTCTCATCTCGAATGCCG
1 ATGCCATGTCCCAAACATGGTCTTACACTAGCACACATATC-AACGCCG
* * *
69346266 ATGCCAAGTCCTAGACATGGTCTTA
1 ATGCCATGTCCCAAACATGGTCTTA
69346291 TACAGGATGT
Statistics
Matches: 178, Mismatches: 38, Indels: 3
0.81 0.17 0.01
Matches are distributed among these distances:
47 1 0.01
48 150 0.84
49 27 0.15
ACGTcount: A:0.29, C:0.30, G:0.16, T:0.25
Consensus pattern (48 bp):
ATGCCATGTCCCAAACATGGTCTTACACTAGCACACATATCAACGCCG
Found at i:69349436 original size:30 final size:30
Alignment explanation
Indices: 69349390--69349449 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
69349380 TTCCCGAGCC
69349390 TAGGGGAAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGAAAAAGTGTAATTATGCAAAAGTT
* *
69349420 TAGGGGTAAAAA-TGTAATTTTGCCAAAGTT
1 TAGGGG-AAAAAGTGTAATTATGCAAAAGTT
69349450 CGTATTAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
30 22 0.81
31 5 0.19
ACGTcount: A:0.40, C:0.05, G:0.25, T:0.30
Consensus pattern (30 bp):
TAGGGGAAAAAGTGTAATTATGCAAAAGTT
Found at i:69353080 original size:21 final size:21
Alignment explanation
Indices: 69353054--69353096 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
69353044 ACAGTGGTTG
69353054 AACTCATTGCCACGAAGTTCA
1 AACTCATTGCCACGAAGTTCA
69353075 AACTCATTGCCACGAAGTTCA
1 AACTCATTGCCACGAAGTTCA
69353096 A
1 A
69353097 TCACTACTAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.35, C:0.28, G:0.14, T:0.23
Consensus pattern (21 bp):
AACTCATTGCCACGAAGTTCA
Found at i:69355582 original size:27 final size:26
Alignment explanation
Indices: 69355534--69355593 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
69355524 GCGAGGCTGC
*
69355534 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * * *
69355561 CAGATATTGTGGCTAGGCCACCCGAA
1 CAGATATTGTGACGAAGCCACCAGAA
69355587 CAGATAT
1 CAGATAT
69355594 ATATATGTGG
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 8 0.29
27 20 0.71
ACGTcount: A:0.33, C:0.22, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:69356339 original size:27 final size:27
Alignment explanation
Indices: 69356309--69356535 Score: 215
Period size: 27 Copynumber: 8.4 Consensus size: 27
69356299 AGGGGAAAAT
* * *
69356309 GGTAATTTTACCCCACGAGGGTATCTC
1 GGTAATTTTACCCTACAAGGGTATTTC
* *
69356336 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
*
69356363 AGT-ATTTCTACCCTACAAGGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTC
69356390 GGTAATTCTT-CCCTACAAGGGTATTTC
1 GGTAATT-TTACCCTACAAGGGTATTTC
* * *
69356417 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
* * ** *
69356444 AGTAATTCTACGTTACAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
* * * *
69356471 AGTAATTCTATCCTACAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
* * * * *
69356498 GGTAATTCTACCTTATAGGGGTATTTT
1 GGTAATTTTACCCTACAAGGGTATTTC
69356525 GGTAATTTTAC
1 GGTAATTTTAC
69356536 AAACCAGGGG
Statistics
Matches: 173, Mismatches: 23, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
26 4 0.02
27 164 0.95
28 4 0.02
29 1 0.01
ACGTcount: A:0.24, C:0.19, G:0.20, T:0.37
Consensus pattern (27 bp):
GGTAATTTTACCCTACAAGGGTATTTC
Found at i:69356530 original size:54 final size:54
Alignment explanation
Indices: 69356310--69356558 Score: 295
Period size: 54 Copynumber: 4.6 Consensus size: 54
69356300 GGGGAAAATG
* * * *
69356310 GTAATTTTACCCCAC-GAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAG-GGGTATTTCGGTAATTCTACCTTACAGGGGTATTTCA
* * * * *
69356364 GTATTTCTACCCTACAAGGGTATTTCGGTAATTCTTCCCTACAAGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCTTACAGGGGTATTTCA
* *
69356418 GTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACGTTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCTTACAGGGGTATTTCA
* * **
69356472 GTAATTCTATCCTACAGGGGTATTTCGGTAATTCTACCTTATAGGGGTATTTTG
1 GTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCTTACAGGGGTATTTCA
* ** *
69356526 GTAATTTTA-CAAACCAGGGGTATTTTGGTAATT
1 GTAATTCTACCCTA-CAGGGGTATTTCGGTAATT
69356559 TTGCTAATAG
Statistics
Matches: 169, Mismatches: 24, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
53 2 0.01
54 167 0.99
ACGTcount: A:0.25, C:0.18, G:0.20, T:0.37
Consensus pattern (54 bp):
GTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCTTACAGGGGTATTTCA
Found at i:69356531 original size:81 final size:81
Alignment explanation
Indices: 69356326--69356523 Score: 290
Period size: 81 Copynumber: 2.4 Consensus size: 81
69356316 TTACCCCACG
* * *
69356326 AGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTCAGTATTTCTACCCTACAAGGGTATTTCG
1 AGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCA
69356391 GTAATTCTTCCCTACA
66 GTAATTCTTCCCTACA
* ** *
69356407 AGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACGTTACAGGGGTATTTCA
1 AGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCA
69356472 GTAATTCTAT-CCTACA
66 GTAATTCT-TCCCTACA
* * *
69356488 GGGGTATTTCGGTAATTCTACCTTATAGGGGTATTT
1 AGGGTATTTCGGTAATTCTACCCTACAGGGGTATTT
69356524 TGGTAATTTT
Statistics
Matches: 105, Mismatches: 11, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
81 104 0.99
82 1 0.01
ACGTcount: A:0.24, C:0.19, G:0.20, T:0.36
Consensus pattern (81 bp):
AGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCA
GTAATTCTTCCCTACA
Found at i:69356544 original size:27 final size:26
Alignment explanation
Indices: 69356431--69356613 Score: 134
Period size: 27 Copynumber: 6.8 Consensus size: 26
69356421 ATTCTACCCT
** * * *
69356431 ACAGGGGTATTTCAGTAATTCTACGTT
1 ACAGGGGTATTTTGGTAATTTTGC-TA
** *
69356458 ACAGGGGTATTTCAGTAATTCTATCCT-
1 ACAGGGGTATTTTGGTAATT-T-TGCTA
* ** *
69356485 ACAGGGGTATTTCGGTAATTCTACCTT
1 ACAGGGGTATTTTGGTAATT-TTGCTA
* * *
69356512 ATAGGGGTATTTTGGTAATTTTACAA
1 ACAGGGGTATTTTGGTAATTTTGCTA
69356538 ACCAGGGGTATTTTGGTAATTTTGCTA
1 A-CAGGGGTATTTTGGTAATTTTGCTA
*
69356565 ATAGAGGGTATTTTGGTAATTTTGCTA
1 ACAG-GGGTATTTTGGTAATTTTGCTA
* *
69356592 ATCAAGGGTATTTGGGTAATTT
1 A-CAGGGGTATTTTGGTAATTT
69356614 GGTAAACTAA
Statistics
Matches: 133, Mismatches: 17, Indels: 12
0.82 0.10 0.07
Matches are distributed among these distances:
26 8 0.06
27 121 0.91
28 2 0.02
29 2 0.02
ACGTcount: A:0.26, C:0.11, G:0.23, T:0.40
Consensus pattern (26 bp):
ACAGGGGTATTTTGGTAATTTTGCTA
Found at i:69356574 original size:54 final size:53
Alignment explanation
Indices: 69356432--69356613 Score: 159
Period size: 54 Copynumber: 3.4 Consensus size: 53
69356422 TTCTACCCTA
* * * * ** * **
69356432 CAGGGGTATTTCAGTAATTCTACGTTACAGGGGTATTTCAGTAATTCTATCCTA-
1 CAGGGGTATTTCGGTAATT-TACCTAATAGGGGTATTTTGGTAATTTTA-CAAAC
*
69356486 CAGGGGTATTTCGGTAATTCTACCTTATAGGGGTATTTTGGTAATTTTACAAAC
1 CAGGGGTATTTCGGTAATT-TACCTAATAGGGGTATTTTGGTAATTTTACAAAC
* ** * * *
69356540 CAGGGGTATTTTGGTAATTTTGCTAATAGAGGGTATTTTGGTAATTTTGCTAAT
1 CAGGGGTATTTCGGTAATTTACCTAATAG-GGGTATTTTGGTAATTTTACAAAC
* *
69356594 CAAGGGTATTTGGGTAATTT
1 CAGGGGTATTTCGGTAATTT
69356614 GGTAAACTAA
Statistics
Matches: 109, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
53 9 0.08
54 100 0.92
ACGTcount: A:0.25, C:0.11, G:0.24, T:0.40
Consensus pattern (53 bp):
CAGGGGTATTTCGGTAATTTACCTAATAGGGGTATTTTGGTAATTTTACAAAC
Found at i:69356574 original size:81 final size:80
Alignment explanation
Indices: 69356325--69356585 Score: 287
Period size: 81 Copynumber: 3.2 Consensus size: 80
69356315 TTTACCCCAC
* * *
69356325 GAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTCAGT-ATTTCTACCCTACAAGGGTATTT
1 GAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTT-TA-CATACAGGGGTATTT
69356389 CGGTAATTCTTCCCTACA
64 CGGTAATTCTT-CCTACA
* * *
69356407 -AGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACGTTACAGGGGTATTTC
1 GAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTTTAC-ATACAGGGGTATTTC
*
69356471 AGTAATTCTATCCTACA
65 GGTAATTCT-TCCTACA
* * ** * *
69356488 G-GGGTATTTCGGTAATTCTACCTTATAGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTT
1 GAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTTTACATA-CAGGGGTATTTC
* *
69356552 GGTAATT-TTGCTAATA
65 GGTAATTCTTCCT-ACA
*
69356568 GAGGGTATTTTGGTAATT
1 GAGGGTATTTCGGTAATT
69356586 TTGCTAATCA
Statistics
Matches: 153, Mismatches: 19, Indels: 15
0.82 0.10 0.08
Matches are distributed among these distances:
79 3 0.02
80 6 0.04
81 140 0.92
82 4 0.03
ACGTcount: A:0.25, C:0.16, G:0.21, T:0.38
Consensus pattern (80 bp):
GAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTTTACATACAGGGGTATTTCG
GTAATTCTTCCTACA
Found at i:69365867 original size:43 final size:43
Alignment explanation
Indices: 69365813--69365926 Score: 176
Period size: 43 Copynumber: 2.7 Consensus size: 43
69365803 GATACTATCG
* * *
69365813 ATGCCACTGTCCCAGAAAGGGTCTTACACGCAATCAT-AATACA
1 ATGCCAATGTCCCAGACATGGTCTTACACGCAATC-TCAATACA
*
69365856 ATGCCAATGTCCCAGACATGGTCTCACACGCAATCTCAATACA
1 ATGCCAATGTCCCAGACATGGTCTTACACGCAATCTCAATACA
69365899 ATGCCAATGTCCCAGACATGGTCTTACA
1 ATGCCAATGTCCCAGACATGGTCTTACA
69365927 TGTAATCACA
Statistics
Matches: 65, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
42 1 0.02
43 64 0.98
ACGTcount: A:0.32, C:0.30, G:0.16, T:0.22
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATGGTCTTACACGCAATCTCAATACA
Found at i:69366522 original size:30 final size:30
Alignment explanation
Indices: 69366486--69366542 Score: 105
Period size: 30 Copynumber: 1.9 Consensus size: 30
69366476 CCCAATACAA
69366486 AACATATTAACCCAACAAATATCTTTCGTT
1 AACATATTAACCCAACAAATATCTTTCGTT
*
69366516 AACATATTAACCCAACACATATCTTTC
1 AACATATTAACCCAACAAATATCTTTC
69366543 CTTTTTCATC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.40, C:0.26, G:0.02, T:0.32
Consensus pattern (30 bp):
AACATATTAACCCAACAAATATCTTTCGTT
Found at i:69373142 original size:70 final size:70
Alignment explanation
Indices: 69373029--69373169 Score: 264
Period size: 70 Copynumber: 2.0 Consensus size: 70
69373019 AGCTGTGAGG
*
69373029 TTTGAGGCCAGAGTGCCTGCTAGATCCTACGCTATTTGCGCTCACGAAGAAACGTCATTTCCAGA
1 TTTGAGGCCAGAGCGCCTGCTAGATCCTACGCTATTTGCGCTCACGAAGAAACGTCATTTCCAGA
69373094 TGTTA
66 TGTTA
*
69373099 TTTGAGGCCAGAGCGCCTGCTAGATCCTACGCTATTTGCGCTCACGAAGAAGCGTCATTTCCAGA
1 TTTGAGGCCAGAGCGCCTGCTAGATCCTACGCTATTTGCGCTCACGAAGAAACGTCATTTCCAGA
69373164 TGTTA
66 TGTTA
69373169 T
1 T
69373170 CACTAGTAAT
Statistics
Matches: 69, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
70 69 1.00
ACGTcount: A:0.23, C:0.25, G:0.23, T:0.28
Consensus pattern (70 bp):
TTTGAGGCCAGAGCGCCTGCTAGATCCTACGCTATTTGCGCTCACGAAGAAACGTCATTTCCAGA
TGTTA
Found at i:69378013 original size:17 final size:16
Alignment explanation
Indices: 69377991--69378022 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
69377981 ACTCATTTTA
69377991 GTAAAAAGTACTAAATT
1 GTAAAAAGTAC-AAATT
69378008 GTAAAAAGTACAAAT
1 GTAAAAAGTACAAAT
69378023 GTTGAGTTCT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.56, C:0.06, G:0.12, T:0.25
Consensus pattern (16 bp):
GTAAAAAGTACAAATT
Found at i:69379192 original size:20 final size:20
Alignment explanation
Indices: 69379167--69379213 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 20
69379157 CGACAATGTT
69379167 TATGTTGTGAAAGACTATGG
1 TATGTTGTGAAAGACTATGG
*
69379187 TATGTTGTGAAAGATTATGG
1 TATGTTGTGAAAGACTATGG
*
69379207 TAAGTTG
1 TATGTTG
69379214 CAAGTTGGTA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.30, C:0.02, G:0.30, T:0.38
Consensus pattern (20 bp):
TATGTTGTGAAAGACTATGG
Found at i:69386747 original size:20 final size:20
Alignment explanation
Indices: 69386722--69386760 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
69386712 CAATGTTTAA
69386722 GTTGTGAAAGACTATGGTAT
1 GTTGTGAAAGACTATGGTAT
* *
69386742 GTTGTGTAAGATTATGGTA
1 GTTGTGAAAGACTATGGTA
69386761 AGTTTCAAGT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.28, C:0.03, G:0.31, T:0.38
Consensus pattern (20 bp):
GTTGTGAAAGACTATGGTAT
Found at i:69395701 original size:38 final size:38
Alignment explanation
Indices: 69395658--69395733 Score: 136
Period size: 38 Copynumber: 2.0 Consensus size: 38
69395648 TTCATCCTTT
69395658 TTCATTTCTTTTGG-CTGAAAATTCTAAGGAAGGAGGAA
1 TTCATTTCTTTTGGTC-GAAAATTCTAAGGAAGGAGGAA
69395696 TTCATTTCTTTTGGTCGAAAATTCTAAGGAAGGAGGAA
1 TTCATTTCTTTTGGTCGAAAATTCTAAGGAAGGAGGAA
69395734 GGAGTTCTTG
Statistics
Matches: 37, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
38 36 0.97
39 1 0.03
ACGTcount: A:0.32, C:0.11, G:0.24, T:0.34
Consensus pattern (38 bp):
TTCATTTCTTTTGGTCGAAAATTCTAAGGAAGGAGGAA
Found at i:69397016 original size:40 final size:40
Alignment explanation
Indices: 69396922--69397066 Score: 184
Period size: 40 Copynumber: 3.6 Consensus size: 40
69396912 TACTCGAATG
*
69396922 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* * *
69396963 ACATCCGGACTAAGAT-CTGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * *
69397003 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
* *
69397043 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
69397067 CTTGTGCGAG
Statistics
Matches: 90, Mismatches: 12, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
39 1 0.01
40 61 0.68
41 27 0.30
42 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:69409339 original size:42 final size:39
Alignment explanation
Indices: 69409292--69409398 Score: 128
Period size: 42 Copynumber: 2.7 Consensus size: 39
69409282 ACTCAATGAT
*
69409292 ATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGGCGACTAC
1 ATCCGGGCTAAGT-CCGAAGGCATTTGTGCT-A-GCGACTAC
* * *
69409334 ATCCGGACTAAGATCTGAAGGCATTTGTGCTAGCGACTAT
1 ATCCGGGCTAAG-TCCGAAGGCATTTGTGCTAGCGACTAC
69409374 ATCC-GGCTAAG-CCGAAGGCATTTGT
1 ATCCGGGCTAAGTCCGAAGGCATTTGT
69409399 ATGCTAGTGA
Statistics
Matches: 58, Mismatches: 6, Indels: 7
0.82 0.08 0.10
Matches are distributed among these distances:
37 13 0.22
39 6 0.10
40 11 0.19
41 1 0.02
42 26 0.45
43 1 0.02
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.25
Consensus pattern (39 bp):
ATCCGGGCTAAGTCCGAAGGCATTTGTGCTAGCGACTAC
Found at i:69409404 original size:39 final size:39
Alignment explanation
Indices: 69409290--69409433 Score: 132
Period size: 39 Copynumber: 3.6 Consensus size: 39
69409280 TTACTCAATG
* *
69409290 ATATCCGGGCTAAGTCCCGAAGGCTTTTG-TGCTAAGGCGACT
1 ATATCC-GGCTAAG-ACCGAAGGCATTTGTTGCT-A-GCGACT
* *
69409332 ACATCCGGACTAAGATCTGAAGGCATTTG-TGCTAGCGACT
1 ATATCCGG-CTAAGA-CCGAAGGCATTTGTTGCTAGCGACT
* *
69409372 ATATCCGGCTAAG-CCGAAGGCATTTGTATGCTAGTGACC
1 ATATCCGGCTAAGACCGAAGGCATTTGT-TGCTAGCGACT
*
69409411 ATATCCGGTTAAGACCCGAAGGC
1 ATATCCGGCTAAGA-CCGAAGGC
69409434 CTTGTGCGAG
Statistics
Matches: 87, Mismatches: 9, Indels: 13
0.80 0.08 0.12
Matches are distributed among these distances:
37 12 0.14
39 26 0.30
40 13 0.15
41 11 0.13
42 25 0.29
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (39 bp):
ATATCCGGCTAAGACCGAAGGCATTTGTTGCTAGCGACT
Found at i:69410239 original size:16 final size:17
Alignment explanation
Indices: 69410207--69410240 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
69410197 AAATCACTAA
*
69410207 AAATAGTAGAATGAATT
1 AAATAGTAGAATAAATT
69410224 AAATAGT-GAATAAATT
1 AAATAGTAGAATAAATT
69410240 A
1 A
69410241 TGTAAACTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 9 0.56
17 7 0.44
ACGTcount: A:0.56, C:0.00, G:0.15, T:0.29
Consensus pattern (17 bp):
AAATAGTAGAATAAATT
Found at i:69759035 original size:39 final size:40
Alignment explanation
Indices: 69758990--69759157 Score: 106
Period size: 40 Copynumber: 4.2 Consensus size: 40
69758980 CGGGGTTTAG
* * *
69758990 CCGGATATAACCACTCGCA-CAAGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
*** * *
69759029 CCGGATATGGTCACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
** * * * **
69759069 CCGGATATAGTCGCTAGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGA-CTTAAC
* ** * * * *
69759109 CCGGATGTAGTCGCTTAGCACAAAAGCCTTCGGGACTTAGC
1 CCGGATATAACCAC-TAGCATAAAGGCCTTCGGGACTTAAC
69759150 CCGGATAT
1 CCGGATAT
69759158 CATTCGAGTA
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
39 18 0.17
40 61 0.56
41 27 0.25
42 3 0.03
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (40 bp):
CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
Found at i:69759140 original size:41 final size:40
Alignment explanation
Indices: 69759013--69759157 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
69759003 CTCGCACAAG
* * * * *
69759013 GCCTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
69759053 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* * *
69759093 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
69759134 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
69759158 CATTCGAGTA
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 3 0.03
40 59 0.64
41 27 0.29
42 3 0.03
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:69760386 original size:38 final size:38
Alignment explanation
Indices: 69760344--69760419 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
69760334 CAAGAACTCC
69760344 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
1 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
69760382 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
1 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
69760420 AAAGGATGAA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.32, C:0.24, G:0.13, T:0.32
Consensus pattern (38 bp):
TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
Found at i:69767219 original size:65 final size:64
Alignment explanation
Indices: 69767144--69767273 Score: 233
Period size: 65 Copynumber: 2.0 Consensus size: 64
69767134 AGTCCCATAC
69767144 ATCAGATAATAATAACATGGCATGCAGTAAATAGTAACAGTCAAACATGCATTCAGGTCAACCTT
1 ATCAGATAATAATAACATGGCATGCAGTAAATAGTAACA-TCAAACATGCATTCAGGTCAACCTT
* *
69767209 ATCAGATAATAATAACATGGCATGTAGTAAATAGTAACATCAAACATGCATTTAGGTCAACCTT
1 ATCAGATAATAATAACATGGCATGCAGTAAATAGTAACATCAAACATGCATTCAGGTCAACCTT
69767273 A
1 A
69767274 ACCCTAGGGG
Statistics
Matches: 63, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
64 25 0.40
65 38 0.60
ACGTcount: A:0.42, C:0.17, G:0.15, T:0.26
Consensus pattern (64 bp):
ATCAGATAATAATAACATGGCATGCAGTAAATAGTAACATCAAACATGCATTCAGGTCAACCTT
Found at i:69769125 original size:93 final size:93
Alignment explanation
Indices: 69769013--69769183 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
69769003 GCCCATAAGT
* * *
69769013 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
*
69769078 TGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
*
69769106 GAACTCGGACTCAACTCAACGAGTTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
*
69769171 CGAGTTCGGATGC
66 CGAGCTCGGATGC
69769184 TCAACCATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:69769180 original size:46 final size:46
Alignment explanation
Indices: 69769005--69769180 Score: 200
Period size: 46 Copynumber: 3.8 Consensus size: 46
69768995 TGTAACCCGC
* * *
69769005 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCACAT
*
69769051 CCATAAGTGAACTCGGACTCAACTCAATGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA---C-A-TTCACAT
* *
69769101 CTC-T---CGAACTCGGACTCAACTCAACGAGTTCGGACATTCACAT
1 C-CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCACAT
*
69769144 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
69769181 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 8, Indels: 22
0.79 0.06 0.16
Matches are distributed among these distances:
42 3 0.03
43 7 0.06
44 1 0.01
46 64 0.58
47 27 0.24
49 1 0.01
50 5 0.05
51 3 0.03
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCACAT
Found at i:69772035 original size:19 final size:18
Alignment explanation
Indices: 69771998--69772041 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
69771988 ATACATACAG
69771998 TAAT-ATTTTTCTAATAA
1 TAATAATTTTTCTAATAA
*
69772015 TAATAATTTTATCTCATAA
1 TAATAATTTT-TCTAATAA
*
69772034 TACTAATT
1 TAATAATT
69772042 AAAATTTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 4 0.17
18 5 0.22
19 14 0.61
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATAATTTTTCTAATAA
Found at i:69775819 original size:32 final size:32
Alignment explanation
Indices: 69775783--69775849 Score: 116
Period size: 32 Copynumber: 2.1 Consensus size: 32
69775773 ACGGGCGTGC
*
69775783 CCCACGGCCGTATGCCCCAAAATCTATATAAA
1 CCCACGCCCGTATGCCCCAAAATCTATATAAA
*
69775815 CCCACGCCCGTGTGCCCCAAAATCTATATAAA
1 CCCACGCCCGTATGCCCCAAAATCTATATAAA
69775847 CCC
1 CCC
69775850 CTCACTATTC
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.31, C:0.39, G:0.12, T:0.18
Consensus pattern (32 bp):
CCCACGCCCGTATGCCCCAAAATCTATATAAA
Found at i:69780015 original size:48 final size:48
Alignment explanation
Indices: 69779943--69780037 Score: 127
Period size: 48 Copynumber: 2.0 Consensus size: 48
69779933 TATGAACTAA
* ** * * *
69779943 ACCCCCTAAATACCTAAGGGGAATGAAACCTAATACGGATCTTGTTAG
1 ACCCCCTAAATACCAAAGAAGAATGAAACCTAAGACAGATATTGTTAG
*
69779991 ACCCCCTAAATACCAAAGAAGAATGAAATCTAAGACAGATATTGTTA
1 ACCCCCTAAATACCAAAGAAGAATGAAACCTAAGACAGATATTGTTA
69780038 TTATTATCTG
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
48 40 1.00
ACGTcount: A:0.41, C:0.21, G:0.16, T:0.22
Consensus pattern (48 bp):
ACCCCCTAAATACCAAAGAAGAATGAAACCTAAGACAGATATTGTTAG
Found at i:69782683 original size:40 final size:39
Alignment explanation
Indices: 69782646--69782830 Score: 194
Period size: 40 Copynumber: 4.6 Consensus size: 39
69782636 GCTACTCGTT
*
69782646 CAAATGCCTTCGGGTCATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGATT-TAGTAACTCGCA
*
69782686 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGATTTAGTAACTCGCA
* * *
69782726 CAAATGCCTTCGGGCTTAGCCCAGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGATTTAGTAACTCGCA
* * * * * *
69782765 CAAATGCCTTCGGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGG-GCTTAGCCCGGATTTAGTAAC-TCGCA
*
69782806 CAAA-GCCTTCGGCACTTAGCCCGGA
1 CAAATGCCTTCGG-GCTTAGCCCGGA
69782831 CATCATTCGA
Statistics
Matches: 123, Mismatches: 19, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
39 34 0.28
40 79 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAGCCCGGATTTAGTAACTCGCA
Found at i:69782790 original size:79 final size:80
Alignment explanation
Indices: 69782646--69782828 Score: 203
Period size: 79 Copynumber: 2.3 Consensus size: 80
69782636 GCTACTCGTT
* **
69782646 CAAATGCCTTCGGGTCATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGG-CTTAGCCCGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
* *
69782711 ATTTAGTAAC-TCGCA
65 ATATAGTAACTTAGCA
* **
69782726 CAAATGCCTTCGGGCTTAGCCCAGAAT-TAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCG
1 CAAATGCCTTCGGGCTTAGCCC-GAATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCG
* *
69782789 GATATGGTCACTTAGCA
64 GATATAGTAACTTAGCA
*
69782806 CAAA-GCCTTCGGCACTTAGCCCG
1 CAAATGCCTTCGG-GCTTAGCCCG
69782829 GACATCATTC
Statistics
Matches: 88, Mismatches: 11, Indels: 9
0.81 0.10 0.08
Matches are distributed among these distances:
78 3 0.03
79 53 0.60
80 32 0.36
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.25
Consensus pattern (80 bp):
CAAATGCCTTCGGGCTTAGCCCGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
TATAGTAACTTAGCA
Found at i:69784026 original size:56 final size:56
Alignment explanation
Indices: 69783959--69784134 Score: 343
Period size: 56 Copynumber: 3.1 Consensus size: 56
69783949 TATTAGTTTA
*
69783959 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
69784015 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
69784071 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
69784127 TTGCCCAT
1 TTGCCCAT
69784135 CATCCCTTGT
Statistics
Matches: 119, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
56 119 1.00
ACGTcount: A:0.23, C:0.23, G:0.09, T:0.45
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:69787885 original size:48 final size:48
Alignment explanation
Indices: 69787814--69787911 Score: 187
Period size: 48 Copynumber: 2.0 Consensus size: 48
69787804 AACTATGAAC
69787814 TAAACCCCCTAAATACCTAAGGGGAATGAAACCTAAGACGGATCTTGT
1 TAAACCCCCTAAATACCTAAGGGGAATGAAACCTAAGACGGATCTTGT
*
69787862 TAAACCCCCTAAATACCTAAGGGGAATGAAACCTAAGATGGATCTTGT
1 TAAACCCCCTAAATACCTAAGGGGAATGAAACCTAAGACGGATCTTGT
69787910 TA
1 TA
69787912 TTATTATCTA
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 49 1.00
ACGTcount: A:0.38, C:0.21, G:0.18, T:0.22
Consensus pattern (48 bp):
TAAACCCCCTAAATACCTAAGGGGAATGAAACCTAAGACGGATCTTGT
Found at i:69798946 original size:25 final size:24
Alignment explanation
Indices: 69798859--69798922 Score: 101
Period size: 24 Copynumber: 2.7 Consensus size: 24
69798849 AAGGCTATGC
** *
69798859 GGCACTATGTGTGCGAGATTACAT
1 GGCACTATGTGTGCGAGAAAACGT
69798883 GGCACTATGTGTGCGAGAAAACGT
1 GGCACTATGTGTGCGAGAAAACGT
69798907 GGCACTATGTGTGCGA
1 GGCACTATGTGTGCGA
69798923 ATAAGTAAGA
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
24 37 1.00
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.25
Consensus pattern (24 bp):
GGCACTATGTGTGCGAGAAAACGT
Found at i:69801530 original size:40 final size:40
Alignment explanation
Indices: 69801499--69801629 Score: 201
Period size: 40 Copynumber: 3.3 Consensus size: 40
69801489 GGACTAAGAT
69801499 CCGAAGGCATTTGTGCGAGTTATTAATTCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGTTATTAATTCCGGGTTAAGTC
* * *
69801539 CCGAAGGCCTTTGTGCGAGATACTAATTCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGTTATTAATTCCGGGTTAAGTC
* *
69801579 CCGAAGGCATTCGTGCGAGTT-TTAAAATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGTTATT-AATTCCGGGTTAAGTC
69801619 CCGAAGGCATT
1 CCGAAGGCATT
69801630 GTATGAGTTA
Statistics
Matches: 82, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 81 0.99
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGTTATTAATTCCGGGTTAAGTC
Found at i:69801650 original size:39 final size:38
Alignment explanation
Indices: 69801499--69801666 Score: 167
Period size: 40 Copynumber: 4.2 Consensus size: 38
69801489 GGACTAAGAT
* *
69801499 CCGAAGGCATTTGTGCGAGTTATTAATTCCGGGTTAAGTC
1 CCGAAGGCA-TTGTGCGAGTTACTAA-ACCGGGTTAAGTC
* * *
69801539 CCGAAGGCCTTTGTGCGAGATACTAATTCCGGGTTAAGTC
1 CCGAAGG-CATTGTGCGAGTTACTAA-ACCGGGTTAAGTC
*
69801579 CCGAAGGCATTCGTGCGAGTT-TTAAAATCCGGGTTAAGTC
1 CCGAAGGCATT-GTGCGAGTTACT-AAA-CCGGGTTAAGTC
** * *
69801619 CCGAAGGCATTGTATGAGTTACTATAACCGGGCTATGTC
1 CCGAAGGCATTGTGCGAGTTACTA-AACCGGGTTAAGTC
69801658 CCGAAGGCA
1 CCGAAGGCA
69801667 CTTGAACGAG
Statistics
Matches: 110, Mismatches: 12, Indels: 13
0.81 0.09 0.10
Matches are distributed among these distances:
39 31 0.28
40 78 0.71
41 1 0.01
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.27
Consensus pattern (38 bp):
CCGAAGGCATTGTGCGAGTTACTAAACCGGGTTAAGTC
Found at i:69809410 original size:40 final size:39
Alignment explanation
Indices: 69809360--69809455 Score: 140
Period size: 40 Copynumber: 2.4 Consensus size: 39
69809350 ATATCTGGAC
*
69809360 TAAGATCCGAAGGCATTTGTGCGAGTTATT-AATTCCGGGT
1 TAAG-TCCGAAGGCATTTGTGCGAGTT-TTAAAATCCGGGT
*
69809400 TAAGTCCCGAAGGCCTTTGTGCGAGTTTTAAAATCCGGGT
1 TAAGT-CCGAAGGCATTTGTGCGAGTTTTAAAATCCGGGT
69809440 TAAGTCCGAAGGCATT
1 TAAGTCCGAAGGCATT
69809456 GTATGAGTTA
Statistics
Matches: 51, Mismatches: 3, Indels: 5
0.86 0.05 0.08
Matches are distributed among these distances:
39 13 0.25
40 38 0.75
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (39 bp):
TAAGTCCGAAGGCATTTGTGCGAGTTTTAAAATCCGGGT
Found at i:69816816 original size:39 final size:39
Alignment explanation
Indices: 69816639--69816805 Score: 271
Period size: 39 Copynumber: 4.3 Consensus size: 39
69816629 CGAGACTTTA
*
69816639 AGCCCGGATATAATACCAGCACGAATGCCTTCGGGACTT
1 AGCCCGGATATAACACCAGCACGAATGCCTTCGGGACTT
* *
69816678 AGTCCGGATATAACGCCAGCACGAATGCCTTCGGGACTT
1 AGCCCGGATATAACACCAGCACGAATGCCTTCGGGACTT
* *
69816717 AGCCCGGATATAGCACCAGCACGAATGCCTTCAGGACTT
1 AGCCCGGATATAACACCAGCACGAATGCCTTCGGGACTT
*
69816756 AGCCCGGATATAATACCAGCACGAATGCCTTCGGGACTT
1 AGCCCGGATATAACACCAGCACGAATGCCTTCGGGACTT
*
69816795 AGCCCAGATAT
1 AGCCCGGATAT
69816806 TTTTCCAGCA
Statistics
Matches: 117, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 117 1.00
ACGTcount: A:0.28, C:0.29, G:0.23, T:0.20
Consensus pattern (39 bp):
AGCCCGGATATAACACCAGCACGAATGCCTTCGGGACTT
Found at i:69816841 original size:78 final size:78
Alignment explanation
Indices: 69816639--69816922 Score: 258
Period size: 78 Copynumber: 3.6 Consensus size: 78
69816629 CGAGACTTTA
* * * * **
69816639 AGCCCGGATATAATACCAGCACGAATGCCTTCGGGAC-TT-AGTCCGGATATAACGCCAGCACGA
1 AGCCCGGATATATTTCCAGCACTAA-GCCTGC-GGACTTTAAGTCCGGATATAATACCAGCACGA
69816702 ATGCCTTCGGGACTT
64 ATGCCTTCGGGACTT
*** * * *
69816717 AGCCCGGATATAGCACCAGCACGAATGCCTTCAGGAC-TT-AGCCCGGATATAATACCAGCACGA
1 AGCCCGGATATATTTCCAGCACTAA-GCCTGC-GGACTTTAAGTCCGGATATAATACCAGCACGA
69816780 ATGCCTTCGGGACTT
64 ATGCCTTCGGGACTT
* * * * * * *
69816795 AGCCCAGATATTTTTCCAGCACTTAGCCTGCGGACTTTAAGTCCGGATATATTTCCAGCA-TAAA
1 AGCCCGGATATATTTCCAGCACTAAGCCTGCGGACTTTAAGTCCGGATATAATACCAGCACGAAT
*
69816859 GCCTGC-GGACTT
66 GCCTTCGGGACTT
* *
69816871 CAAGTCCGGATATATTTCCAGCA-TAAAGCCTGCGGACTTCAAGTCCGGATAT
1 --AGCCCGGATATATTTCCAGCACT-AAGCCTGCGGACTTTAAGTCCGGATAT
69816923 TTTTCCAATA
Statistics
Matches: 176, Mismatches: 25, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
76 10 0.06
77 15 0.09
78 151 0.86
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.23
Consensus pattern (78 bp):
AGCCCGGATATATTTCCAGCACTAAGCCTGCGGACTTTAAGTCCGGATATAATACCAGCACGAAT
GCCTTCGGGACTT
Found at i:69816844 original size:39 final size:39
Alignment explanation
Indices: 69816801--69816929 Score: 206
Period size: 39 Copynumber: 3.3 Consensus size: 39
69816791 ACTTAGCCCA
* * *
69816801 GATATTTTTCCAGCACT-TAGCCTGCGGACTTTAAGTCCG
1 GATATATTTCCAGCA-TAAAGCCTGCGGACTTCAAGTCCG
69816840 GATATATTTCCAGCATAAAGCCTGCGGACTTCAAGTCCG
1 GATATATTTCCAGCATAAAGCCTGCGGACTTCAAGTCCG
69816879 GATATATTTCCAGCATAAAGCCTGCGGACTTCAAGTCCG
1 GATATATTTCCAGCATAAAGCCTGCGGACTTCAAGTCCG
*
69816918 GATATTTTTCCA
1 GATATATTTCCA
69816930 ATACCATGCA
Statistics
Matches: 85, Mismatches: 4, Indels: 2
0.93 0.04 0.02
Matches are distributed among these distances:
38 1 0.01
39 84 0.99
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (39 bp):
GATATATTTCCAGCATAAAGCCTGCGGACTTCAAGTCCG
Found at i:69819296 original size:27 final size:27
Alignment explanation
Indices: 69819266--69819443 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
69819256 ATATTGAGTC
* * * *
69819266 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
69819293 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
69819320 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
69819348 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
69819375 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
69819402 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
69819429 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
69819444 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:69819405 original size:82 final size:81
Alignment explanation
Indices: 69819287--69819442 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
69819277 TGCTATATAA
* *
69819287 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
69819352 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
69819369 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
69819433 CACTTAGTGC
65 CACTTAGTGC
69819443 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:69827354 original size:27 final size:27
Alignment explanation
Indices: 69827324--69827501 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
69827314 ATATTGAGTC
* * * *
69827324 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
69827351 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
69827378 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
69827406 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
69827433 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
69827460 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
69827487 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
69827502 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:69827463 original size:82 final size:81
Alignment explanation
Indices: 69827345--69827500 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
69827335 TGCTATATAA
* *
69827345 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
69827410 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
69827427 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
69827491 CACTTAGTGC
65 CACTTAGTGC
69827501 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:69837499 original size:40 final size:39
Alignment explanation
Indices: 69837415--69837599 Score: 194
Period size: 40 Copynumber: 4.6 Consensus size: 39
69837405 TCGAATGATG
* * * *
69837415 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
69837455 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
* *
69837495 TCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
*
69837534 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AA
* *
69837575 -CCAGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
69837600 AACGAGTAGC
Statistics
Matches: 123, Mismatches: 18, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
39 34 0.28
40 79 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:69837551 original size:79 final size:81
Alignment explanation
Indices: 69837415--69837597 Score: 214
Period size: 79 Copynumber: 2.3 Consensus size: 81
69837405 TCGAATGATG
* *
69837415 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
69837479 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
69837494 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
69837556 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* * *
69837574 ACCAGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
69837598 TGAACGAGTA
Statistics
Matches: 88, Mismatches: 11, Indels: 8
0.82 0.10 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.65
80 30 0.34
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:69837621 original size:79 final size:79
Alignment explanation
Indices: 69837468--69837632 Score: 192
Period size: 79 Copynumber: 2.1 Consensus size: 79
69837458 GGACTAAGAT
* * **
69837468 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCAGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
69837533 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * *
69837547 CCGAAGGCATTTGTGCGAGTTACT-ATAACCAGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCAGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
69837610 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
69837626 CCGAAGG
1 CCGAAGG
69837633 TACGTGATTC
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 24 0.33
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCAGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:69846313 original size:43 final size:43
Alignment explanation
Indices: 69846247--69846403 Score: 176
Period size: 43 Copynumber: 3.7 Consensus size: 43
69846237 AGCTCGTACA
* * *
69846247 ATGCCAACGTCCCAAATGTGGTCTTACAAGTAATCAAATATCG
1 ATGCCAATGTCCCAGACGTGGTCTTACAAGTAATCAAATATCG
* * *
69846290 ATGCCACTGTCCCAGACAG-GGTCTTACATGAAATCAAATA-CG
1 ATGCCAATGTCCCAGAC-GTGGTCTTACAAGTAATCAAATATCG
* * *
69846332 ATGCCAATGTCCCAAACGTGGTCTTACACGTAAATCATAA-GTCG
1 ATGCCAATGTCCCAGACGTGGTCTTACAAGT-AATCA-AATATCG
*
69846376 ATGCCAATGTCCCAGACGTAGTCTTACA
1 ATGCCAATGTCCCAGACGTGGTCTTACA
69846404 CGATAACACA
Statistics
Matches: 96, Mismatches: 13, Indels: 9
0.81 0.11 0.08
Matches are distributed among these distances:
41 1 0.01
42 27 0.28
43 37 0.39
44 31 0.32
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.24
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACGTGGTCTTACAAGTAATCAAATATCG
Found at i:69846400 original size:86 final size:85
Alignment explanation
Indices: 69846247--69846403 Score: 219
Period size: 86 Copynumber: 1.8 Consensus size: 85
69846237 AGCTCGTACA
* * *
69846247 ATGCCAACGTCCCAAATGTGGTCTTACAAGTAATCAAATATCGATGCCACTGTCCCAGACAGGGT
1 ATGCCAACGTCCCAAACGTGGTCTTACAAGTAATCAAATATCGATGCCAATGTCCCAGACAGAGT
69846312 CTTACATGAAATCAAATACG
66 CTTACATGAAATCAAATACG
* * *
69846332 ATGCCAATGTCCCAAACGTGGTCTTACACGTAAATCATAA-GTCGATGCCAATGTCCCAGAC-GT
1 ATGCCAACGTCCCAAACGTGGTCTTACAAGT-AATCA-AATATCGATGCCAATGTCCCAGACAG-
69846395 AGTCTTACA
63 AGTCTTACA
69846404 CGATAACACA
Statistics
Matches: 63, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
85 29 0.46
86 32 0.51
87 2 0.03
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.24
Consensus pattern (85 bp):
ATGCCAACGTCCCAAACGTGGTCTTACAAGTAATCAAATATCGATGCCAATGTCCCAGACAGAGT
CTTACATGAAATCAAATACG
Found at i:69848230 original size:92 final size:93
Alignment explanation
Indices: 69848130--69848314 Score: 302
Period size: 92 Copynumber: 2.0 Consensus size: 93
69848120 GAGCTGCCAG
*
69848130 GAAATAATAGAAAAAAGATGAATAAACAATTAAACCCAAAACAAAATCTCTAATCA-AACTTCAG
1 GAAATAATAGAAAAAAGATGAATAAACAATTAAACCCAAAACAAAATCTCTAATCAGAAC-TCAC
69848194 TCCTAAC-AAAGTAAATAAAGGCGAAGAA
65 TCCTAACAAAAGTAAATAAAGGCGAAGAA
* * *
69848222 GAAATAATAGAAAAAAGATGAATCAACAATTAAACCTAAAACAAAATCTCTAATCAGAGCTCACT
1 GAAATAATAGAAAAAAGATGAATAAACAATTAAACCCAAAACAAAATCTCTAATCAGAACTCACT
*
69848287 CCTAACAAAAGTAAATAAAGGCTAAGAA
66 CCTAACAAAAGTAAATAAAGGCGAAGAA
69848315 AAGGATTGCT
Statistics
Matches: 86, Mismatches: 5, Indels: 3
0.91 0.05 0.03
Matches are distributed among these distances:
92 64 0.74
93 22 0.26
ACGTcount: A:0.56, C:0.16, G:0.11, T:0.18
Consensus pattern (93 bp):
GAAATAATAGAAAAAAGATGAATAAACAATTAAACCCAAAACAAAATCTCTAATCAGAACTCACT
CCTAACAAAAGTAAATAAAGGCGAAGAA
Found at i:69852850 original size:27 final size:27
Alignment explanation
Indices: 69852820--69852997 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
69852810 ATATTGAGTC
* * * *
69852820 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
69852847 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
69852874 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
69852902 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
69852929 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
69852956 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
69852983 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
69852998 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:69852959 original size:82 final size:81
Alignment explanation
Indices: 69852841--69852996 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
69852831 TGCTATATAA
* *
69852841 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
69852906 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
69852923 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
69852987 CACTTAGTGC
65 CACTTAGTGC
69852997 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Done.