Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 214 of 349
Found at i:69855386 original size:45 final size:46
Alignment explanation
Indices: 69855322--69855496 Score: 216
Period size: 45 Copynumber: 3.8 Consensus size: 46
69855312 TGTAACCCGC
*
69855322 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGG-CGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
* *
69855367 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C--GTTCGCAT
* *
69855417 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
*
69855460 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
69855497 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 9, Indels: 19
0.80 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 36 0.32
46 29 0.26
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
Found at i:69855487 original size:93 final size:92
Alignment explanation
Indices: 69855329--69855499 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 92
69855319 CGCCCATAAG
*
69855329 CGAACTCGGACTCAACTCAACGAGCTCGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 CGAACTCGGACTCAACTCAACGAGCTCGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
69855394 CGAGTTCGGATGCCTAGTTACATCTCA
66 CGAGTTCGGATGCCTAGTTACATCTCA
*
69855421 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGG-CATTCGCATCCATAAGTGAACTCGGACTCAACTCA
69855486 ACGAGTTCGGATGC
65 ACGAGTTCGGATGC
69855500 TCAACCATCC
Statistics
Matches: 76, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
92 28 0.37
93 48 0.63
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (92 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCA
Found at i:69862978 original size:93 final size:93
Alignment explanation
Indices: 69862865--69863036 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
69862855 CGCCCATAAG
* *
69862865 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
69862930 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
69862958 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
69863023 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
69863037 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:69863033 original size:46 final size:46
Alignment explanation
Indices: 69862858--69863033 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
69862848 TGTAACCCGC
* * *
69862858 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
69862904 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
69862954 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
69862997 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
69863034 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:69865179 original size:31 final size:30
Alignment explanation
Indices: 69865140--69865205 Score: 114
Period size: 31 Copynumber: 2.2 Consensus size: 30
69865130 TGGGCTTATA
69865140 TGAAACTATGAAAATTTGGCTAGGCAAGTG
1 TGAAACTATGAAAATTTGGCTAGGCAAGTG
*
69865170 TGAACACTATGAAAATTTGGCTAGGCAGGTG
1 TGAA-ACTATGAAAATTTGGCTAGGCAAGTG
69865201 TGAAA
1 TGAAA
69865206 GGAAATTATG
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
30 5 0.15
31 29 0.85
ACGTcount: A:0.36, C:0.11, G:0.27, T:0.26
Consensus pattern (30 bp):
TGAAACTATGAAAATTTGGCTAGGCAAGTG
Found at i:69865780 original size:43 final size:43
Alignment explanation
Indices: 69865644--69865792 Score: 112
Period size: 43 Copynumber: 3.5 Consensus size: 43
69865634 TATGCGTTCT
* ** *
69865644 CATGTAAGACCAC-GTCTGGGACGTTAGCGTCG-ACTTATGATTTA
1 CATGTAAGACCACTGTCTGGGACATCGGCATCGTA-TT-TGA-TTA
* * * *
69865688 TATGTACGAACA-TGTCTGGGACATCGGCATCGTATTTGATTT
1 CATGTAAGACCACTGTCTGGGACATCGGCATCGTATTTGATTA
** *
69865730 TGTGTAAGACC-CTGTCTGGGCCAGT-GGCATCGATATTTGATTA
1 CATGTAAGACCACTGTCTGGGACA-TCGGCATCG-TATTTGATTA
69865773 CATGTAAGACCAC-GTCTGGG
1 CATGTAAGACCACTGTCTGGG
69865793 GCATTGGAAT
Statistics
Matches: 84, Mismatches: 15, Indels: 13
0.75 0.13 0.12
Matches are distributed among these distances:
42 27 0.32
43 29 0.35
44 27 0.32
45 1 0.01
ACGTcount: A:0.23, C:0.19, G:0.26, T:0.31
Consensus pattern (43 bp):
CATGTAAGACCACTGTCTGGGACATCGGCATCGTATTTGATTA
Found at i:69869263 original size:7 final size:7
Alignment explanation
Indices: 69869251--69869278 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
69869241 AATATCGATG
69869251 CCCTAAA
1 CCCTAAA
69869258 CCCTAAA
1 CCCTAAA
69869265 CCCTAAA
1 CCCTAAA
69869272 CCCTAAA
1 CCCTAAA
69869279 TGGCTACGAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.43, C:0.43, G:0.00, T:0.14
Consensus pattern (7 bp):
CCCTAAA
Found at i:69878763 original size:20 final size:20
Alignment explanation
Indices: 69878740--69878800 Score: 59
Period size: 20 Copynumber: 3.0 Consensus size: 20
69878730 TTGCCTGTAA
69878740 TACTGGTGGCTTGTCCATAT
1 TACTGGTGGCTTGTCCATAT
*** * * *
69878760 TACTGACAGCTTGTCTACAA
1 TACTGGTGGCTTGTCCATAT
*
69878780 TACTAGTGGCTTGTCCATAT
1 TACTGGTGGCTTGTCCATAT
69878800 T
1 T
69878801 TATGGTGGTT
Statistics
Matches: 28, Mismatches: 13, Indels: 0
0.68 0.32 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.21, C:0.21, G:0.20, T:0.38
Consensus pattern (20 bp):
TACTGGTGGCTTGTCCATAT
Found at i:69879161 original size:20 final size:21
Alignment explanation
Indices: 69879136--69879177 Score: 68
Period size: 20 Copynumber: 2.0 Consensus size: 21
69879126 AGCTAAATTT
*
69879136 TAATAATTTTTCT-TGGACTA
1 TAATAATTTTTATATGGACTA
69879156 TAATAATTTTTATATGGACTA
1 TAATAATTTTTATATGGACTA
69879177 T
1 T
69879178 GGCATGGGAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
20 12 0.60
21 8 0.40
ACGTcount: A:0.33, C:0.07, G:0.10, T:0.50
Consensus pattern (21 bp):
TAATAATTTTTATATGGACTA
Found at i:69881389 original size:42 final size:42
Alignment explanation
Indices: 69881332--69881457 Score: 137
Period size: 43 Copynumber: 3.0 Consensus size: 42
69881322 AGGGTTACTG
* **
69881332 AGATTACGTGTAAGACCATATCAGGGATATGGCATCGATATG
1 AGATTACGTGTAAGACCATATCTGGGATATGGCATCGATACA
* * * *
69881374 AGACTT-TGTGTAAGACCATAGCTGGGCTATTGGCAACGATACA
1 AGA-TTACGTGTAAGACCATATCTGGGATA-TGGCATCGATACA
* * *
69881417 AGATTACATGTAAGACCATATCTGGGATATGACATTGATAC
1 AGATTACGTGTAAGACCATATCTGGGATATGGCATCGATAC
69881458 GGTACTGTGT
Statistics
Matches: 67, Mismatches: 14, Indels: 6
0.77 0.16 0.07
Matches are distributed among these distances:
42 33 0.49
43 34 0.51
ACGTcount: A:0.33, C:0.16, G:0.24, T:0.27
Consensus pattern (42 bp):
AGATTACGTGTAAGACCATATCTGGGATATGGCATCGATACA
Found at i:69888064 original size:12 final size:12
Alignment explanation
Indices: 69888047--69888073 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
69888037 CACACACCCG
69888047 TGTGCTAGGCCA
1 TGTGCTAGGCCA
69888059 TGTGCTAGGCCA
1 TGTGCTAGGCCA
69888071 TGT
1 TGT
69888074 AAAAACTGTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.15, C:0.22, G:0.33, T:0.30
Consensus pattern (12 bp):
TGTGCTAGGCCA
Found at i:69891498 original size:53 final size:53
Alignment explanation
Indices: 69891315--69891569 Score: 245
Period size: 55 Copynumber: 4.8 Consensus size: 53
69891305 ATTAGGGTTT
* * *
69891315 AAGGATACCGTGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTC-TAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGG-CATTGGTAA-G-TTCATAAGGC
* * * *
69891370 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTT-C-ATAAGGC
* * *
69891425 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCATAAGGC
* * *
69891478 AAGGCTACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTT--TCAA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCAT-AAGGC
* * * *
69891527 AAGGATACCACGTAAGACCATGACAAGTCATGGCAATGGTAAG
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAG
69891570 GTACCCGTGT
Statistics
Matches: 171, Mismatches: 23, Indels: 18
0.81 0.11 0.08
Matches are distributed among these distances:
49 39 0.23
51 1 0.01
52 8 0.05
53 44 0.26
54 8 0.05
55 67 0.39
56 4 0.02
ACGTcount: A:0.36, C:0.18, G:0.25, T:0.21
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCATAAGGC
Found at i:69891521 original size:108 final size:110
Alignment explanation
Indices: 69891325--69891522 Score: 303
Period size: 108 Copynumber: 1.8 Consensus size: 110
69891315 AAGGATACCG
*
69891325 TGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGCAAGGAAATCATGTAAGACCA
1 TGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGACCA
*
69891390 TGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTCCCA
66 TGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTCCCA
* * **
69891435 TGTAAGACCATGCCAAGGCATGG-CATTGGTGA-G-TTCATAAGGCAAGGCTACCATGTAAGACC
1 TGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTC-TAAGGCAAGGAAACCATGTAAGACC
*
69891497 ATGTCAAGACATGGCAATGGTAAGTT
65 ATGTCAAGACATGGCAATGATAAGTT
69891523 TCAAAAGGAT
Statistics
Matches: 80, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
107 3 0.04
108 47 0.59
109 7 0.09
110 23 0.29
ACGTcount: A:0.34, C:0.17, G:0.26, T:0.23
Consensus pattern (110 bp):
TGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGACCA
TGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTCCCA
Found at i:69891782 original size:16 final size:16
Alignment explanation
Indices: 69891761--69891791 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
69891751 ATAACTTTGA
69891761 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
69891777 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
69891792 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:69899006 original size:56 final size:53
Alignment explanation
Indices: 69898902--69899105 Score: 205
Period size: 53 Copynumber: 3.8 Consensus size: 53
69898892 GGTTTAAGAA
* * *
69898902 TACCGTGTAAGACCATGCCAAGACATGGAAATTGGTAAGGTT-TCTAAGGCAAGG
1 TACCATGTAAGACCATGCCAAGACATGG-CATTGGTAA-GTTCTATAAGGCAAGG
* * * *
69898956 AAATCATGTAAGACCATGTCAAAGACATGGCATTGATAAGTTACTATAAGGCAAAGG
1 -TACCATGTAAGACCATG-CCAAGACATGGCATTGGTAAGTT-CTATAAGGC-AAGG
* * * *
69899013 TCCCATGTAAGATCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGCAAGG
1 TACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCTATAAGGCAAGG
* * *
69899065 CTACCATGTAAGACCATGTCAAGACATGCCAATGGTAAGTT
1 -TACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTT
69899106 TCAAAAGGAT
Statistics
Matches: 122, Mismatches: 22, Indels: 12
0.78 0.14 0.08
Matches are distributed among these distances:
52 4 0.03
53 40 0.33
54 4 0.03
55 40 0.33
56 30 0.25
57 4 0.03
ACGTcount: A:0.35, C:0.18, G:0.25, T:0.23
Consensus pattern (53 bp):
TACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCTATAAGGCAAGG
Found at i:69899365 original size:16 final size:16
Alignment explanation
Indices: 69899344--69899374 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
69899334 ATAAATTTGA
69899344 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
69899360 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
69899375 ACTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:69907793 original size:40 final size:40
Alignment explanation
Indices: 69907739--69908083 Score: 557
Period size: 40 Copynumber: 8.6 Consensus size: 40
69907729 CATTTGAATG
69907739 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
*
69907779 ATATCCGGGTTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
*
69907819 ATATCCGGGCTAAGACCTGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
*
69907859 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
* *
69907899 ATATCCGGGATAAGACCCGAAGGCATTTGTGCGAACTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
* *
69907939 ATATCCGGGCTAAGACCCGACGGCGTTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
*
69907979 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-AAGTTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAA-TTGAT
* * *
69908019 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
* *
69908059 ATACCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCA
69908084 ATTGAGCTTG
Statistics
Matches: 282, Mismatches: 21, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
39 2 0.01
40 279 0.99
41 1 0.00
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
Found at i:69913721 original size:16 final size:16
Alignment explanation
Indices: 69913700--69913731 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
69913690 AAGAAAGGAG
69913700 AAAAAAATGTGTTCAT
1 AAAAAAATGTGTTCAT
69913716 AAAAAAATGTGTTCAT
1 AAAAAAATGTGTTCAT
69913732 CCTTTTTCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.06, G:0.12, T:0.31
Consensus pattern (16 bp):
AAAAAAATGTGTTCAT
Found at i:69915390 original size:40 final size:40
Alignment explanation
Indices: 69915336--69915680 Score: 548
Period size: 40 Copynumber: 8.6 Consensus size: 40
69915326 CATTTGAATG
*
69915336 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAACTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
*
69915376 ATATCCGGGTTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
*
69915416 ATATCCGGGCTAAGACCTGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
*
69915456 ATATCCGGGCTAAGACCCAAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
* *
69915496 ATATCCGGGATAAGACCCGAAGGCATTTGTGCGAACTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
* *
69915536 ATATCCGGGCTAAGACCCGACGGCGTTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
*
69915576 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-AAGTTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAA-TTGAT
* * *
69915616 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
* *
69915656 ATACCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCA
69915681 ATTGAGCTTG
Statistics
Matches: 281, Mismatches: 22, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
39 2 0.01
40 278 0.99
41 1 0.00
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
Found at i:69920622 original size:45 final size:45
Alignment explanation
Indices: 69920558--69920734 Score: 238
Period size: 45 Copynumber: 4.0 Consensus size: 45
69920548 ATTATTGTAC
69920558 GACACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGA
1 GACACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGA
*
69920603 GACACTATTCGGGCCTTTGAGCCTAGCAGGCTACAATGCCGGTGA
1 GACACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGA
* *
69920648 GATACTATTCGGG-CTTTCGAGCCTAGCAGGCTATAATACCGGTGA
1 GACACTATTCGGGCCTTT-GAGCCTAGCAGGCTATAATGCCGGTGA
** * *
69920693 -A-AGGATATCGGGCC-TCGAGCCTAGCAGGC-AAAATGCCGGTGA
1 GACACTAT-TCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGA
69920735 ATGAATTCGG
Statistics
Matches: 120, Mismatches: 9, Indels: 9
0.87 0.07 0.07
Matches are distributed among these distances:
42 11 0.09
43 16 0.13
44 11 0.09
45 82 0.68
ACGTcount: A:0.24, C:0.24, G:0.29, T:0.22
Consensus pattern (45 bp):
GACACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGA
Found at i:69922128 original size:17 final size:16
Alignment explanation
Indices: 69922082--69922129 Score: 53
Period size: 16 Copynumber: 2.9 Consensus size: 16
69922072 TCAAGGTTCT
69922082 TTTTAATTTTTA-TTC
1 TTTTAATTTTTATTTC
**
69922097 TATTTTGTTTTTATTTC
1 T-TTTAATTTTTATTTC
69922114 TTTTAATTTTCTATTT
1 TTTTAATTTT-TATTT
69922130 AACTTTTTTT
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
15 1 0.04
16 16 0.62
17 9 0.35
ACGTcount: A:0.17, C:0.06, G:0.02, T:0.75
Consensus pattern (16 bp):
TTTTAATTTTTATTTC
Found at i:69924415 original size:25 final size:24
Alignment explanation
Indices: 69924370--69924419 Score: 57
Period size: 24 Copynumber: 2.0 Consensus size: 24
69924360 CAGCAGTTTT
*
69924370 AAATTGCTTTTGAGAGCAAAGGAAA
1 AAATTGCTTTTGAGAG-AAAAGAAA
*
69924395 AAATTGC-TTTGAAGGGAAAAGAAA
1 AAATTGCTTTTG-AGAGAAAAGAAA
69924419 A
1 A
69924420 GTCAAACCCT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
24 12 0.55
25 10 0.45
ACGTcount: A:0.48, C:0.06, G:0.24, T:0.22
Consensus pattern (24 bp):
AAATTGCTTTTGAGAGAAAAGAAA
Found at i:69926928 original size:134 final size:134
Alignment explanation
Indices: 69926759--69927030 Score: 535
Period size: 134 Copynumber: 2.0 Consensus size: 134
69926749 ATTATAATAT
69926759 AAGATAAATATAATTTTGAGAGAATCTTGATTCACATATTAAGTGGGTAATATTGACTGTATCCA
1 AAGATAAATATAATTTTGAGAGAATCTTGATTCACATATTAAGTGGGTAATATTGACTGTATCCA
69926824 ATGTTACATATCACATAATCTTGGTCATAAAAGTTTCCTACAATTTAGAGGGGAATTAGATAACC
66 ATGTTACATATCACATAATCTTGGTCATAAAAGTTTCCTACAATTTAGAGGGGAATTAGATAACC
69926889 CTCC
131 CTCC
69926893 AAGATAAATATAATTTTGAGAGAATCTTGATTCACATATTAAGTGGGTAATATTGACTGTATCCA
1 AAGATAAATATAATTTTGAGAGAATCTTGATTCACATATTAAGTGGGTAATATTGACTGTATCCA
*
69926958 ATGTTACATATCACATAATCTTGGTCATAAAAGTTTCCTACAATTTAGATGGGAATTAGATAACC
66 ATGTTACATATCACATAATCTTGGTCATAAAAGTTTCCTACAATTTAGAGGGGAATTAGATAACC
69927023 CTCC
131 CTCC
69927027 AAGA
1 AAGA
69927031 CAATGATCTG
Statistics
Matches: 137, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
134 137 1.00
ACGTcount: A:0.37, C:0.14, G:0.15, T:0.33
Consensus pattern (134 bp):
AAGATAAATATAATTTTGAGAGAATCTTGATTCACATATTAAGTGGGTAATATTGACTGTATCCA
ATGTTACATATCACATAATCTTGGTCATAAAAGTTTCCTACAATTTAGAGGGGAATTAGATAACC
CTCC
Found at i:69927226 original size:74 final size:74
Alignment explanation
Indices: 69927112--69927259 Score: 296
Period size: 74 Copynumber: 2.0 Consensus size: 74
69927102 TATCTCATAA
69927112 ATCTAAGTTTCTTGACCATACATCTAATTCAGATTCAAAATGCCTTTCCCTTCCCTGCTAACAGA
1 ATCTAAGTTTCTTGACCATACATCTAATTCAGATTCAAAATGCCTTTCCCTTCCCTGCTAACAGA
69927177 AGAAATATT
66 AGAAATATT
69927186 ATCTAAGTTTCTTGACCATACATCTAATTCAGATTCAAAATGCCTTTCCCTTCCCTGCTAACAGA
1 ATCTAAGTTTCTTGACCATACATCTAATTCAGATTCAAAATGCCTTTCCCTTCCCTGCTAACAGA
69927251 AGAAATATT
66 AGAAATATT
69927260 CTCCCTATAG
Statistics
Matches: 74, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
74 74 1.00
ACGTcount: A:0.32, C:0.24, G:0.09, T:0.34
Consensus pattern (74 bp):
ATCTAAGTTTCTTGACCATACATCTAATTCAGATTCAAAATGCCTTTCCCTTCCCTGCTAACAGA
AGAAATATT
Found at i:69937628 original size:291 final size:291
Alignment explanation
Indices: 69937104--69937687 Score: 1168
Period size: 291 Copynumber: 2.0 Consensus size: 291
69937094 AACAAAACAT
69937104 GCCTTAAAACTTTGTAGTTAATAACTTAGACTACCGTATGATTTCAATTAGGTAGGTATCCAGCA
1 GCCTTAAAACTTTGTAGTTAATAACTTAGACTACCGTATGATTTCAATTAGGTAGGTATCCAGCA
69937169 AAAAGTATAACTAGGTTCAAAAATAAATCCCAATGAATAGAAAGAAAGCTAAATTTCAATCATGT
66 AAAAGTATAACTAGGTTCAAAAATAAATCCCAATGAATAGAAAGAAAGCTAAATTTCAATCATGT
69937234 TTTATGCACTCCTAAATTACACTATGTGCAATAAACAAATGAATAATGCAATTATATAAAAAGGG
131 TTTATGCACTCCTAAATTACACTATGTGCAATAAACAAATGAATAATGCAATTATATAAAAAGGG
69937299 AACCTGATAATCAACACTAGAAGATGGGCCCATCATAGGCTCTATTTGTTTACAAACACTAGCTT
196 AACCTGATAATCAACACTAGAAGATGGGCCCATCATAGGCTCTATTTGTTTACAAACACTAGCTT
69937364 TGATTATCATATCATATAAAGAAAGAGCCCC
261 TGATTATCATATCATATAAAGAAAGAGCCCC
69937395 GCCTTAAAACTTTGTAGTTAATAACTTAGACTACCGTATGATTTCAATTAGGTAGGTATCCAGCA
1 GCCTTAAAACTTTGTAGTTAATAACTTAGACTACCGTATGATTTCAATTAGGTAGGTATCCAGCA
69937460 AAAAGTATAACTAGGTTCAAAAATAAATCCCAATGAATAGAAAGAAAGCTAAATTTCAATCATGT
66 AAAAGTATAACTAGGTTCAAAAATAAATCCCAATGAATAGAAAGAAAGCTAAATTTCAATCATGT
69937525 TTTATGCACTCCTAAATTACACTATGTGCAATAAACAAATGAATAATGCAATTATATAAAAAGGG
131 TTTATGCACTCCTAAATTACACTATGTGCAATAAACAAATGAATAATGCAATTATATAAAAAGGG
69937590 AACCTGATAATCAACACTAGAAGATGGGCCCATCATAGGCTCTATTTGTTTACAAACACTAGCTT
196 AACCTGATAATCAACACTAGAAGATGGGCCCATCATAGGCTCTATTTGTTTACAAACACTAGCTT
69937655 TGATTATCATATCATATAAAGAAAGAGCCCC
261 TGATTATCATATCATATAAAGAAAGAGCCCC
69937686 GC
1 GC
69937688 TATTATAAAT
Statistics
Matches: 293, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
291 293 1.00
ACGTcount: A:0.40, C:0.17, G:0.14, T:0.28
Consensus pattern (291 bp):
GCCTTAAAACTTTGTAGTTAATAACTTAGACTACCGTATGATTTCAATTAGGTAGGTATCCAGCA
AAAAGTATAACTAGGTTCAAAAATAAATCCCAATGAATAGAAAGAAAGCTAAATTTCAATCATGT
TTTATGCACTCCTAAATTACACTATGTGCAATAAACAAATGAATAATGCAATTATATAAAAAGGG
AACCTGATAATCAACACTAGAAGATGGGCCCATCATAGGCTCTATTTGTTTACAAACACTAGCTT
TGATTATCATATCATATAAAGAAAGAGCCCC
Found at i:69940432 original size:36 final size:36
Alignment explanation
Indices: 69940385--69940457 Score: 146
Period size: 36 Copynumber: 2.0 Consensus size: 36
69940375 ACTTATAGAG
69940385 TAAACTATCAAGAGACGTTTGCCCCTGTTGCCAAAA
1 TAAACTATCAAGAGACGTTTGCCCCTGTTGCCAAAA
69940421 TAAACTATCAAGAGACGTTTGCCCCTGTTGCCAAAA
1 TAAACTATCAAGAGACGTTTGCCCCTGTTGCCAAAA
69940457 T
1 T
69940458 GAACACCATC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.33, C:0.25, G:0.16, T:0.26
Consensus pattern (36 bp):
TAAACTATCAAGAGACGTTTGCCCCTGTTGCCAAAA
Found at i:69941428 original size:30 final size:31
Alignment explanation
Indices: 69941392--69941454 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
69941382 ACTTATTTTA
*
69941392 TTGTTAA-TTTTGTTATTATTTTAAAGGCAT
1 TTGTTAATTTTTGTTATTATTTTAAAGACAT
* *
69941422 TTGTTAATTTTTTTTATTATTTTAGAGACAT
1 TTGTTAATTTTTGTTATTATTTTAAAGACAT
69941453 TT
1 TT
69941455 TCTTGTTAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
30 7 0.24
31 22 0.76
ACGTcount: A:0.25, C:0.03, G:0.11, T:0.60
Consensus pattern (31 bp):
TTGTTAATTTTTGTTATTATTTTAAAGACAT
Found at i:69942897 original size:21 final size:20
Alignment explanation
Indices: 69942858--69942903 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
69942848 TTTTAGAATT
* *
69942858 TTTTTAAAAGAATTTTATAA
1 TTTTTAAAAAAATTATATAA
69942878 TTTTTAAAAAAATATATATAAA
1 TTTTTAAAAAAAT-TATAT-AA
69942900 TTTT
1 TTTT
69942904 GGAATTTTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 12 0.55
21 4 0.18
22 6 0.27
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (20 bp):
TTTTTAAAAAAATTATATAA
Found at i:69943284 original size:18 final size:20
Alignment explanation
Indices: 69943261--69943298 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
69943251 ATAAAAATAT
69943261 CAAATA-TATAT-AAATTCA
1 CAAATATTATATAAAATTCA
69943279 CAAATATTATATAAAATTCA
1 CAAATATTATATAAAATTCA
69943299 AAAAACATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 6 0.33
19 5 0.28
20 7 0.39
ACGTcount: A:0.55, C:0.11, G:0.00, T:0.34
Consensus pattern (20 bp):
CAAATATTATATAAAATTCA
Found at i:69943309 original size:20 final size:21
Alignment explanation
Indices: 69943262--69943309 Score: 55
Period size: 20 Copynumber: 2.3 Consensus size: 21
69943252 TAAAAATATC
69943262 AAATATATATAAATTCACAAA
1 AAATATATATAAATTCACAAA
* *
69943283 TATTATATA-AAATTCA-AAA
1 AAATATATATAAATTCACAAA
69943302 AACATATA
1 AA-ATATA
69943310 AGTACTATAA
Statistics
Matches: 22, Mismatches: 4, Indels: 3
0.76 0.14 0.10
Matches are distributed among these distances:
19 4 0.18
20 11 0.50
21 7 0.32
ACGTcount: A:0.60, C:0.08, G:0.00, T:0.31
Consensus pattern (21 bp):
AAATATATATAAATTCACAAA
Found at i:69947600 original size:17 final size:16
Alignment explanation
Indices: 69947575--69947609 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 16
69947565 GTATACTTTG
69947575 TTTTCCTTTTCTTTTTT
1 TTTTCCTTTT-TTTTTT
*
69947592 TTTTTCTTTTTTTTTT
1 TTTTCCTTTTTTTTTT
69947608 TT
1 TT
69947610 CCTTTTTACA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 8 0.47
17 9 0.53
ACGTcount: A:0.00, C:0.11, G:0.00, T:0.89
Consensus pattern (16 bp):
TTTTCCTTTTTTTTTT
Found at i:69947609 original size:13 final size:13
Alignment explanation
Indices: 69947581--69947616 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
69947571 TTTGTTTTCC
69947581 TTTTC-TTTTTTT
1 TTTTCTTTTTTTT
69947593 TTTTCTTTTTTTT
1 TTTTCTTTTTTTT
69947606 TTTTCCTTTTT
1 TTTT-CTTTTT
69947617 ACAACACATA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
12 5 0.23
13 11 0.50
14 6 0.27
ACGTcount: A:0.00, C:0.11, G:0.00, T:0.89
Consensus pattern (13 bp):
TTTTCTTTTTTTT
Found at i:69947616 original size:12 final size:12
Alignment explanation
Indices: 69947581--69947608 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
69947571 TTTGTTTTCC
69947581 TTTTCTTTTTTT
1 TTTTCTTTTTTT
69947593 TTTTCTTTTTTT
1 TTTTCTTTTTTT
69947605 TTTT
1 TTTT
69947609 TCCTTTTTAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.00, C:0.07, G:0.00, T:0.93
Consensus pattern (12 bp):
TTTTCTTTTTTT
Found at i:69949982 original size:89 final size:89
Alignment explanation
Indices: 69949832--69950020 Score: 276
Period size: 89 Copynumber: 2.1 Consensus size: 89
69949822 CTTAAGGGTG
69949832 TAAAAA-GCCCTCAAAATTTTTCAAAAAACACAATTAAGCCCCTGCTTTTTTTTGCACTCAATTG
1 TAAAAAGGCCCTCAAAATTTTTCAAAAAACACAATTAAGCCCCTGCTTTTTTTTGCACTCAATTG
* *
69949896 AGTACTTGAACTTTCAAAATGCAT
66 AGTACTTGAACTATCAAAAAGCAT
* *
69949920 TAAAAAGGCCCTCAAACTTTTTCAAAAAA-AGCAATTAAGCCCTTG-TTTTTTTCTGCACTCAAT
1 TAAAAAGGCCCTCAAAATTTTTCAAAAAACA-CAATTAAGCCCCTGCTTTTTTT-TGCACTCAAT
*
69949983 TGGGTACTTGAACTATCAAAAAGCAT
64 TGAGTACTTGAACTATCAAAAAGCAT
* *
69950009 CAAAAAGACCCT
1 TAAAAAGGCCCT
69950021 TTAACCATTA
Statistics
Matches: 91, Mismatches: 7, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
88 14 0.15
89 77 0.85
ACGTcount: A:0.37, C:0.22, G:0.11, T:0.31
Consensus pattern (89 bp):
TAAAAAGGCCCTCAAAATTTTTCAAAAAACACAATTAAGCCCCTGCTTTTTTTTGCACTCAATTG
AGTACTTGAACTATCAAAAAGCAT
Found at i:69953274 original size:16 final size:17
Alignment explanation
Indices: 69953247--69953294 Score: 53
Period size: 18 Copynumber: 2.8 Consensus size: 17
69953237 AATGTACAAC
* *
69953247 ATTATAATATAAATCAA
1 ATTATTATATAAATAAA
*
69953264 A-TATTATATAATTTAAA
1 ATTATTATATAA-ATAAA
69953281 ATTATTATATAAAT
1 ATTATTATATAAAT
69953295 GTATTTTTAC
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
16 9 0.36
17 6 0.24
18 10 0.40
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (17 bp):
ATTATTATATAAATAAA
Found at i:69953291 original size:34 final size:36
Alignment explanation
Indices: 69953228--69953294 Score: 93
Period size: 34 Copynumber: 1.9 Consensus size: 36
69953218 AATTTATTGT
69953228 ATATAATATAATGTACAACATTATAATATAAATCAA
1 ATATAATATAATGTACAACATTATAATATAAATCAA
* * *
69953264 ATATTATATAATTTA-AA-ATTATTATATAAAT
1 ATATAATATAATGTACAACATTATAATATAAAT
69953295 GTATTTTTAC
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
34 13 0.46
35 2 0.07
36 13 0.46
ACGTcount: A:0.54, C:0.04, G:0.01, T:0.40
Consensus pattern (36 bp):
ATATAATATAATGTACAACATTATAATATAAATCAA
Found at i:69958089 original size:13 final size:13
Alignment explanation
Indices: 69958071--69958103 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
69958061 AGTTTTGAAC
*
69958071 TGTTTTCAAGATA
1 TGTTTTAAAGATA
69958084 TGTTTTAAAGATA
1 TGTTTTAAAGATA
69958097 TGTTTTA
1 TGTTTTA
69958104 CACGTGCTCC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.30, C:0.03, G:0.15, T:0.52
Consensus pattern (13 bp):
TGTTTTAAAGATA
Found at i:69962171 original size:48 final size:48
Alignment explanation
Indices: 69962100--69963012 Score: 1423
Period size: 48 Copynumber: 19.0 Consensus size: 48
69962090 CAAGACAAAT
* * *
69962100 ATATATATGTGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
69962148 ATATGTATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTTTGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
69962196 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
**
69962244 ATATGTATATGTGGTAAAGCCGAATGGCTAACATGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* * * * *
69962292 ATATATATGTGTGGTAAGGCCGAATGGCTAGTGTGAAATATGTATGAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* * *
69962340 ATATGTATATGTGGCAAAGCCGAATGGCTAATATGAAATATGTTTGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* * *
69962388 ATATATATTTGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
**
69962436 ATATGTATATGTGGTAAAGCCGAATGGCTAACATGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
69962484 ATATATATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
69962532 ATATGTATATGTGGTAAAGCC-AATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
69962579 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* * *
69962627 ATATGTATATGTGGTAAAGTCGAATGGCTAATATGAAATATGTATAAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
69962675 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
**
69962723 ATATGTATATGTGGTAAAGCCGAATGGCTAACATGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
69962771 ATATATATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
69962819 ATACGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
69962867 ATATGTATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* * * *
69962915 ATATATATATGTGGTAAATCTGAATGGCTAATGTGAAATATGCATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
69962963 ATATGTATATTTGGTAAAGCCGAATGGCTAATGTGAAATATGTAGGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
69963011 AT
1 AT
69963013 GTGTGTATAT
Statistics
Matches: 787, Mismatches: 77, Indels: 2
0.91 0.09 0.00
Matches are distributed among these distances:
47 47 0.06
48 740 0.94
ACGTcount: A:0.36, C:0.07, G:0.26, T:0.31
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
Found at i:69963203 original size:37 final size:37
Alignment explanation
Indices: 69963153--69963254 Score: 177
Period size: 37 Copynumber: 2.8 Consensus size: 37
69963143 GGAAATATAT
69963153 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
69963190 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* * *
69963227 TTCGGGTAAGACCCGATAACTACATGTG
1 TCCGGGTAAGACCCGATGACTACGTGTG
69963255 AATATGATGT
Statistics
Matches: 62, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 62 1.00
ACGTcount: A:0.24, C:0.20, G:0.30, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:69967695 original size:35 final size:35
Alignment explanation
Indices: 69967630--69967697 Score: 100
Period size: 35 Copynumber: 1.9 Consensus size: 35
69967620 ATTGCTAGGG
*
69967630 CAAACACCTAGTAGTACTACTTCAAGTGTGCTTAA
1 CAAACACCTAGTAGTACTACCTCAAGTGTGCTTAA
* * *
69967665 CAAACACCTATTAGTACTACCTCTATTGTGCTT
1 CAAACACCTAGTAGTACTACCTCAAGTGTGCTT
69967698 GCACATTCAT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
35 29 1.00
ACGTcount: A:0.31, C:0.25, G:0.12, T:0.32
Consensus pattern (35 bp):
CAAACACCTAGTAGTACTACCTCAAGTGTGCTTAA
Found at i:69967831 original size:9 final size:9
Alignment explanation
Indices: 69967813--69967843 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
69967803 AGAATTACAG
*
69967813 TAAAGTAAA
1 TAAAGAAAA
69967822 TAAAGAAAA
1 TAAAGAAAA
69967831 TAAAGAAAA
1 TAAAGAAAA
69967840 TAAA
1 TAAA
69967844 ACATGAAAGA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.74, C:0.00, G:0.10, T:0.16
Consensus pattern (9 bp):
TAAAGAAAA
Found at i:69974380 original size:20 final size:21
Alignment explanation
Indices: 69974337--69974382 Score: 62
Period size: 20 Copynumber: 2.3 Consensus size: 21
69974327 ACTGTTTTGT
69974337 TATGGG-CCAACTGTATTGAA
1 TATGGGCCCAACTGTATTGAA
*
69974357 -ATGGGCCCAACTGTGTT-AA
1 TATGGGCCCAACTGTATTGAA
69974376 TATGGGC
1 TATGGGC
69974383 AAGGCCCAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 7 0.30
20 16 0.70
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (21 bp):
TATGGGCCCAACTGTATTGAA
Found at i:69978237 original size:30 final size:27
Alignment explanation
Indices: 69978178--69978231 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
69978168 CTAAGCATGA
69978178 CAACCATTTTTCGATTAATCTAATGGT
1 CAACCATTTTTCGATTAATCTAATGGT
69978205 CAACCATTTTTCGATTAATCTAATGGT
1 CAACCATTTTTCGATTAATCTAATGGT
69978232 GGTCAATCCT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.30, C:0.19, G:0.11, T:0.41
Consensus pattern (27 bp):
CAACCATTTTTCGATTAATCTAATGGT
Found at i:69984599 original size:40 final size:40
Alignment explanation
Indices: 69984548--69985092 Score: 930
Period size: 40 Copynumber: 13.6 Consensus size: 40
69984538 CATTTGAATG
69984548 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
69984588 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
* *
69984628 ATATCCGGGTTAGGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
* *
69984668 ATATCCGGGTTAAGACCCGAAGGCATTTGTGCGAACTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
*
69984708 ATATCCGGGTTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
69984748 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
69984788 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
*
69984828 ATATCCGGGATAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
*
69984868 ATATCCGGGATAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
* *
69984908 ATATCCGGGATAAGACCCGAAGGCATTTGTGCGAACTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
* *
69984948 ATATCCGGGCTAAGACCCGACGGCGTTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
* * *
69984988 ATATCCGGGCTAAAACCCGAAGGTAATTGTGC-AAGTTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAA-TTGAT
69985028 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
* *
69985068 ATACCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCA
69985093 ATTGAGCTTG
Statistics
Matches: 481, Mismatches: 22, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
39 2 0.00
40 477 0.99
41 2 0.00
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
Found at i:69990631 original size:40 final size:40
Alignment explanation
Indices: 69990580--69991084 Score: 843
Period size: 40 Copynumber: 12.6 Consensus size: 40
69990570 CATTTGAATG
*
69990580 ATATCCGGGCTAAGACACGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
69990620 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
* * *
69990660 ATATCCGGGTTAGGACCCGAAGGCATTTGTGTGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
* *
69990700 ATATCCGGGTTAAGACCCGAAGGCATTTGTGCGAACTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
*
69990740 ATATCCGGGTTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
69990780 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
69990820 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
*
69990860 ATATCCGGGATAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
* *
69990900 ATATCCGGGATAAGACCCGAAGGCATTTGTGCGAACTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
* *
69990940 ATATCCGGGCTAAGACCCGACGGCATTTATGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
*
69990980 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-AAGTTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAA-TTGAT
69991020 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
* *
69991060 ATACCCGAG-TAAAGACCCGAAGGCA
1 ATATCCGGGCT-AAGACCCGAAGGCA
69991085 ATTGAGCTTG
Statistics
Matches: 441, Mismatches: 21, Indels: 6
0.94 0.04 0.01
Matches are distributed among these distances:
39 3 0.01
40 436 0.99
41 2 0.00
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
Found at i:69995470 original size:20 final size:20
Alignment explanation
Indices: 69995447--69995496 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
69995437 CCCTTGTTCG
* *
69995447 CACTTTGGTG-ATCTTGTTTA
1 CACTTTGGTGCAAC-TGTATA
*
69995467 CACTTTTGTGCAACTGTATA
1 CACTTTGGTGCAACTGTATA
69995487 CACTTTGGTG
1 CACTTTGGTG
69995497 TCCCTATTTG
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
20 23 0.92
21 2 0.08
ACGTcount: A:0.18, C:0.18, G:0.20, T:0.44
Consensus pattern (20 bp):
CACTTTGGTGCAACTGTATA
Found at i:69995551 original size:20 final size:20
Alignment explanation
Indices: 69995526--69995563 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
69995516 GCCACTATTC
69995526 GCATTTCAGTGTCCCTGTAT
1 GCATTTCAGTGTCCCTGTAT
*
69995546 GCATTTCGGTGTCCCTGT
1 GCATTTCAGTGTCCCTGT
69995564 TTGAACGTCT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.11, C:0.26, G:0.24, T:0.39
Consensus pattern (20 bp):
GCATTTCAGTGTCCCTGTAT
Found at i:69995576 original size:60 final size:60
Alignment explanation
Indices: 69995480--69995601 Score: 149
Period size: 60 Copynumber: 2.0 Consensus size: 60
69995470 TTTTGTGCAA
* *
69995480 CTGTATACACTTTGGTGTCCCTATTTGCACGACTGTGCCACT-ATTCGCATTTCAGTGTCC
1 CTGTATACACTTTGGTGTCCCTATTTGAACGACTGTGCCACTGATT-GCACTTCAGTGTCC
* * * * *
69995540 CTGTATGCA-TTTCGGTGTCCCTGTTTGAACGTCTGTGCCCCTGGTTGCACTTCAGTGTCC
1 CTGTATACACTTT-GGTGTCCCTATTTGAACGACTGTGCCACTGATTGCACTTCAGTGTCC
69995600 CT
1 CT
69995602 AGCTACACGT
Statistics
Matches: 53, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
59 3 0.06
60 48 0.91
61 2 0.04
ACGTcount: A:0.13, C:0.29, G:0.21, T:0.37
Consensus pattern (60 bp):
CTGTATACACTTTGGTGTCCCTATTTGAACGACTGTGCCACTGATTGCACTTCAGTGTCC
Found at i:69995601 original size:20 final size:20
Alignment explanation
Indices: 69995530--69995601 Score: 65
Period size: 20 Copynumber: 3.6 Consensus size: 20
69995520 CTATTCGCAT
*
69995530 TTCAGTGTCCCT-GTATGCAT
1 TTCAGTGTCCCTGGT-TGCAC
* * *
69995550 TTCGGTGTCCCTGTTTGAAC
1 TTCAGTGTCCCTGGTTGCAC
* * *
69995570 GTCTGTGCCCCTGGTTGCAC
1 TTCAGTGTCCCTGGTTGCAC
69995590 TTCAGTGTCCCT
1 TTCAGTGTCCCT
69995602 AGCTACACGT
Statistics
Matches: 39, Mismatches: 12, Indels: 2
0.74 0.23 0.04
Matches are distributed among these distances:
20 38 0.97
21 1 0.03
ACGTcount: A:0.10, C:0.29, G:0.24, T:0.38
Consensus pattern (20 bp):
TTCAGTGTCCCTGGTTGCAC
Found at i:69998326 original size:27 final size:26
Alignment explanation
Indices: 69998282--69998333 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
69998272 CTCGCTGCAA
*
69998282 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
69998309 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
69998334 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:70000944 original size:27 final size:27
Alignment explanation
Indices: 70000913--70001090 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
70000903 TAAATTGTAC
70000913 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
70000940 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
70000966 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
70000994 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
70001022 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
70001049 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
70001076 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
70001091 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:70001027 original size:82 final size:81
Alignment explanation
Indices: 70000914--70001069 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
70000904 AAATTGTACA
* *
70000914 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
70000978 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
70000995 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
70001060 TGCGAGTTGA
65 TGCGAATTGA
70001070 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:70001081 original size:82 final size:81
Alignment explanation
Indices: 70000910--70001090 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
70000900 GATTAAATTG
* *
70000910 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
70000975 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
70000991 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
70001055 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
70001073 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
70001091 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:70007388 original size:79 final size:79
Alignment explanation
Indices: 70007257--70007418 Score: 324
Period size: 79 Copynumber: 2.1 Consensus size: 79
70007247 GACAGAAGTC
70007257 ATATGTAGATTTAAAGCGCAAGGAAATTGAGTACTCTGTGGGTGATATGGTCTTCTTGAAGGTTT
1 ATATGTAGATTTAAAGCGCAAGGAAATTGAGTACTCTGTGGGTGATATGGTCTTCTTGAAGGTTT
70007322 CGTCTTGGAAGAAA
66 CGTCTTGGAAGAAA
70007336 ATATGTAGATTTAAAGCGCAAGGAAATTGAGTACTCTGTGGGTGATATGGTCTTCTTGAAGGTTT
1 ATATGTAGATTTAAAGCGCAAGGAAATTGAGTACTCTGTGGGTGATATGGTCTTCTTGAAGGTTT
70007401 CGTCTTGGAAGAAA
66 CGTCTTGGAAGAAA
70007415 ATAT
1 ATAT
70007419 TAAGGTTTGG
Statistics
Matches: 83, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
79 83 1.00
ACGTcount: A:0.30, C:0.10, G:0.27, T:0.33
Consensus pattern (79 bp):
ATATGTAGATTTAAAGCGCAAGGAAATTGAGTACTCTGTGGGTGATATGGTCTTCTTGAAGGTTT
CGTCTTGGAAGAAA
Found at i:70009093 original size:47 final size:47
Alignment explanation
Indices: 70009022--70009524 Score: 799
Period size: 47 Copynumber: 10.6 Consensus size: 47
70009012 CCCTTCGGGA
* * * * * * *
70009022 CTTATCACATTTATACACTTTCACATCCATCACGTTGACCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
70009069 CCTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70009116 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
70009163 CTTATCACATATATATACAGTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70009212 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
70009259 CTTATCACATATGTACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70009306 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
70009353 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
70009402 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70009449 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70009496 CTTATCACATATATATACACTTTCACATT
1 CTTATCAC--ATATATACACTTTCACATT
70009525 TATTCAAATA
Statistics
Matches: 427, Mismatches: 23, Indels: 10
0.93 0.05 0.02
Matches are distributed among these distances:
47 319 0.75
49 108 0.25
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:70009291 original size:143 final size:142
Alignment explanation
Indices: 70009022--70009524 Score: 803
Period size: 143 Copynumber: 3.5 Consensus size: 142
70009012 CCCTTCGGGA
* * * * * * * *
70009022 CTTATCACATTTATACACTTTCACATCCATCACGTTGACCACTCGGCCCTATCAC-ATATATACA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATACA
70009086 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACAT
66 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACAT
70009151 CGGCCATTAGGC
131 CGGCCATTAGGC
* * *
70009163 CTTATCACATATATATACAGTTTCACATTCATCACATTGGCCATTCGGCCTTATCAC-ATATATA
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATA
*
70009227 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATGTACACTTTCACATTCATCAC
64 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCAC
*
70009292 ATCGGCTATTAGGC
129 ATCGGCCATTAGGC
70009306 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA-ATATATAC
* *
70009371 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACA
65 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
* *
70009436 TTGGCCATTCGGC
130 TCGGCCATTAGGC
70009449 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA-ATATATAC
70009514 ACTTTCACATT
65 ACTTTCACATT
70009525 TATTCAAATA
Statistics
Matches: 340, Mismatches: 18, Indels: 6
0.93 0.05 0.02
Matches are distributed among these distances:
141 52 0.15
143 288 0.85
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.33
Consensus pattern (142 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATACA
CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACAT
CGGCCATTAGGC
Found at i:70009345 original size:190 final size:190
Alignment explanation
Indices: 70009022--70009524 Score: 889
Period size: 190 Copynumber: 2.6 Consensus size: 190
70009012 CCCTTCGGGA
* * * * * *
70009022 CTTATCACATTTATACACTTTCACATCCATCACGTTGACCACTCGGCCCTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
70009087 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
*
70009152 GGCCATTAGGCCTTATCACATATATATACAGTTTCACATTCATCACATTGGCCATTCGGC
131 GGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
70009212 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATGTACAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
*
70009277 TTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
70009342 GGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
131 GGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
70009402 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
70009467 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATT
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATT
70009525 TATTCAAATA
Statistics
Matches: 296, Mismatches: 15, Indels: 2
0.95 0.05 0.01
Matches are distributed among these distances:
190 277 0.94
192 19 0.06
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.33
Consensus pattern (190 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
GGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:70009411 original size:22 final size:22
Alignment explanation
Indices: 70009383--70009458 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
70009373 TTTCACATTC
70009383 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
** * * *
70009405 ATCACATATATACACTTTC-ACATT
1 ATCACAT-T-GGC-CATTCGGCCTT
70009429 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
70009452 ATCACAT
1 ATCACAT
70009459 ATATACACTT
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 18 0.46
23 5 0.13
24 5 0.13
25 11 0.28
ACGTcount: A:0.26, C:0.30, G:0.11, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:70013264 original size:19 final size:19
Alignment explanation
Indices: 70013240--70013285 Score: 83
Period size: 19 Copynumber: 2.4 Consensus size: 19
70013230 TTTTGGGCTT
*
70013240 AATGGGCCGAAAATAGGCC
1 AATGGGCCGAAAACAGGCC
70013259 AATGGGCCGAAAACAGGCC
1 AATGGGCCGAAAACAGGCC
70013278 AATGGGCC
1 AATGGGCC
70013286 AACGGGCCCA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.35, C:0.24, G:0.33, T:0.09
Consensus pattern (19 bp):
AATGGGCCGAAAACAGGCC
Found at i:70018362 original size:6 final size:6
Alignment explanation
Indices: 70018351--70018472 Score: 244
Period size: 6 Copynumber: 20.3 Consensus size: 6
70018341 GCATATGTTG
70018351 GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT
1 GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT
70018399 GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT
1 GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT
70018447 GTATAT GTATAT GTATAT GTATAT GT
1 GTATAT GTATAT GTATAT GTATAT GT
70018473 GGTTATTCTC
Statistics
Matches: 116, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 116 1.00
ACGTcount: A:0.33, C:0.00, G:0.17, T:0.50
Consensus pattern (6 bp):
GTATAT
Found at i:70025307 original size:6 final size:6
Alignment explanation
Indices: 70025277--70025364 Score: 65
Period size: 6 Copynumber: 14.3 Consensus size: 6
70025267 AAGAAACATT
* * * *
70025277 ATCAGA AGT-AGA ATCAAA ATGAGA ATTAGA ATCAGA ATCAG- GTGACAGA
1 ATCAGA A-TCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA
*
70025326 ATCAGA ATCAGT ATCAGTTA A-CAGA ATCAGA ATCAGA AT
1 ATCAGA ATCAGA ATCAG--A ATCAGA ATCAGA ATCAGA AT
70025365 GTGAATGCAA
Statistics
Matches: 65, Mismatches: 9, Indels: 16
0.72 0.10 0.18
Matches are distributed among these distances:
5 4 0.06
6 52 0.80
7 7 0.11
8 2 0.03
ACGTcount: A:0.48, C:0.12, G:0.19, T:0.20
Consensus pattern (6 bp):
ATCAGA
Found at i:70025332 original size:25 final size:25
Alignment explanation
Indices: 70025298--70025364 Score: 98
Period size: 25 Copynumber: 2.7 Consensus size: 25
70025288 AATCAAAATG
* *
70025298 AGAATTAGAATCAGAATCAGGTGAC
1 AGAATCAGAATCAGAATCAGGTAAC
* *
70025323 AGAATCAGAATCAGTATCAGTTAAC
1 AGAATCAGAATCAGAATCAGGTAAC
70025348 AGAATCAGAATCAGAAT
1 AGAATCAGAATCAGAAT
70025365 GTGAATGCAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 37 1.00
ACGTcount: A:0.46, C:0.13, G:0.19, T:0.21
Consensus pattern (25 bp):
AGAATCAGAATCAGAATCAGGTAAC
Found at i:70025579 original size:27 final size:27
Alignment explanation
Indices: 70025482--70025589 Score: 112
Period size: 27 Copynumber: 4.0 Consensus size: 27
70025472 AGCATGGCTG
** * *
70025482 CCAG-AACAGATATTGTGATAGAGTCA
1 CCAGAAACAGATATTGTGGCAAAGCCA
* *
70025508 CCAGATACAGATATTGTGGCAGAGCCA
1 CCAGAAACAGATATTGTGGCAAAGCCA
*
70025535 CCAG-AACAGATATTTGTGGCATAGCCA
1 CCAGAAACAGATA-TTGTGGCAAAGCCA
* *
70025562 CCAGAAACATATAATGTGGCAAAGCCA
1 CCAGAAACAGATATTGTGGCAAAGCCA
70025589 C
1 C
70025590 TTAACAGAAT
Statistics
Matches: 70, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
26 11 0.16
27 52 0.74
28 7 0.10
ACGTcount: A:0.37, C:0.21, G:0.22, T:0.19
Consensus pattern (27 bp):
CCAGAAACAGATATTGTGGCAAAGCCA
Found at i:70025580 original size:54 final size:53
Alignment explanation
Indices: 70025482--70025589 Score: 135
Period size: 54 Copynumber: 2.0 Consensus size: 53
70025472 AGCATGGCTG
* * * * *
70025482 CCAGAACAGATATTGTGATAGAGTCACCAGATACAGATATTGTGGCAGAGCCA
1 CCAGAACAGATATTGTGACAGAGCCACCAGAAACAGATAATGTGGCAAAGCCA
* * *
70025535 CCAGAACAGATATTTGTGGCATAGCCACCAGAAACATATAATGTGGCAAAGCCA
1 CCAGAACAGATA-TTGTGACAGAGCCACCAGAAACAGATAATGTGGCAAAGCCA
70025589 C
1 C
70025590 TTAACAGAAT
Statistics
Matches: 46, Mismatches: 8, Indels: 1
0.84 0.15 0.02
Matches are distributed among these distances:
53 12 0.26
54 34 0.74
ACGTcount: A:0.37, C:0.21, G:0.22, T:0.19
Consensus pattern (53 bp):
CCAGAACAGATATTGTGACAGAGCCACCAGAAACAGATAATGTGGCAAAGCCA
Found at i:70025776 original size:22 final size:22
Alignment explanation
Indices: 70025748--70025811 Score: 67
Period size: 22 Copynumber: 2.9 Consensus size: 22
70025738 GCAAATACGT
*
70025748 TTGGCACACAGCCATAATCAAG
1 TTGGCACAAAGCCATAATCAAG
* * *
70025770 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAAG
*
70025792 TTGACACAAAGCCATAATCA
1 TTGGCACAAAGCCATAATCA
70025812 GAAGGCTTTA
Statistics
Matches: 34, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
21 2 0.06
22 30 0.88
23 2 0.06
ACGTcount: A:0.36, C:0.23, G:0.20, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAAG
Found at i:70026258 original size:27 final size:27
Alignment explanation
Indices: 70026228--70026335 Score: 137
Period size: 27 Copynumber: 4.0 Consensus size: 27
70026218 AGGGCAAAAT
* * **
70026228 GGTAATTTTACCCCACAAGGGTATCCC
1 GGTAATTCTACCCTACAAGGGTATTTC
70026255 GGTAATTCTACCCTAC-AGGCGTATTTC
1 GGTAATTCTACCCTACAAGG-GTATTTC
*
70026282 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
70026309 GGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
70026336 AATAATTTTG
Statistics
Matches: 71, Mismatches: 8, Indels: 4
0.86 0.10 0.05
Matches are distributed among these distances:
26 3 0.04
27 65 0.92
28 3 0.04
ACGTcount: A:0.23, C:0.24, G:0.19, T:0.33
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:70026294 original size:54 final size:53
Alignment explanation
Indices: 70026232--70026335 Score: 154
Period size: 54 Copynumber: 1.9 Consensus size: 53
70026222 CAAAATGGTA
70026232 ATTTTACCCCACAAGGGTATCCCGGTAATTCTACCCTACAGGCGTATTTCGGT
1 ATTTTACCCCACAAGGGTATCCCGGTAATTCTACCCTACAGGCGTATTTCGGT
* ** * *
70026285 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTATAGGGGTATTTC
1 ATTT-TACCCCACAAGGGTATCCCGGTAATTCTACCCTACAGGCGTATTTC
70026336 AATAATTTTG
Statistics
Matches: 45, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
53 4 0.09
54 41 0.91
ACGTcount: A:0.23, C:0.25, G:0.18, T:0.34
Consensus pattern (53 bp):
ATTTTACCCCACAAGGGTATCCCGGTAATTCTACCCTACAGGCGTATTTCGGT
Found at i:70026465 original size:26 final size:27
Alignment explanation
Indices: 70026327--70026715 Score: 368
Period size: 27 Copynumber: 14.6 Consensus size: 27
70026317 TACCCTATAG
* **
70026327 GGGTATTTCAATAATTTTGTAAATCGA
1 GGGTATTTCAGTAATTTTACAAATCGA
*** * * * *
70026354 GGGTAAAACGGTAATTCTATAAATCGG
1 GGGTATTTCAGTAATTTTACAAATCGA
*
70026381 GGGTACTTTGA-TAATTTTACAAATCGA
1 GGGTA-TTTCAGTAATTTTACAAATCGA
70026408 GGGTATTTCAGTAATTTTACAAATCGA
1 GGGTATTTCAGTAATTTTACAAATCGA
70026435 GGGTATTTCAGTAATTTTAC-AATCGA
1 GGGTATTTCAGTAATTTTACAAATCGA
*
70026461 CGGTATTTC-GATAATTTTACAAATCGA
1 GGGTATTTCAG-TAATTTTACAAATCGA
* ** * * *
70026488 GGATATTTGGGTAATTTTATAAACCGG
1 GGGTATTTCAGTAATTTTACAAATCGA
* *
70026515 GGGTA-TT-GGTAATTTTACAAGTCGA
1 GGGTATTTCAGTAATTTTACAAATCGA
*
70026540 GGGTA-TTCAGTCATTTTACAAATCGA
1 GGGTATTTCAGTAATTTTACAAATCGA
*
70026566 GGGTATTTCAGTAATTTTGCAAA-CTGA
1 GGGTATTTCAGTAATTTTACAAATC-GA
*
70026593 GGGTATTTCGGTAATTTTACAAATCGA
1 GGGTATTTCAGTAATTTTACAAATCGA
* *
70026620 GGGTATTTTAATAATTTTAC-AATCGA
1 GGGTATTTCAGTAATTTTACAAATCGA
* * * *
70026646 CGGTATTTC-GATAATTTTATAAACCGG
1 GGGTATTTCAG-TAATTTTACAAATCGA
* * *
70026673 GGGTACTTT-GGTAATTTTACAACT-GG
1 GGGTA-TTTCAGTAATTTTACAAATCGA
70026699 GGGTATTTCAGTAATTT
1 GGGTATTTCAGTAATTT
70026716 GGTAAACTAA
Statistics
Matches: 298, Mismatches: 50, Indels: 29
0.79 0.13 0.08
Matches are distributed among these distances:
25 25 0.08
26 85 0.29
27 182 0.61
28 6 0.02
ACGTcount: A:0.31, C:0.11, G:0.21, T:0.37
Consensus pattern (27 bp):
GGGTATTTCAGTAATTTTACAAATCGA
Found at i:70026479 original size:53 final size:54
Alignment explanation
Indices: 70026327--70026715 Score: 352
Period size: 53 Copynumber: 7.3 Consensus size: 54
70026317 TACCCTATAG
* ** *** * * * *
70026327 GGGTATTTCAATAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGG
1 GGGTATTTCAGTAATTTTACAAATCGAGGGTATTTCGATAATTTTACAAATCGA
*
70026381 GGGTACTTTGA-TAATTTTACAAATCGAGGGTATTTC-AGTAATTTTACAAATCGA
1 GGGTA-TTTCAGTAATTTTACAAATCGAGGGTATTTCGA-TAATTTTACAAATCGA
*
70026435 GGGTATTTCAGTAATTTTAC-AATCGACGGTATTTCGATAATTTTACAAATCGA
1 GGGTATTTCAGTAATTTTACAAATCGAGGGTATTTCGATAATTTTACAAATCGA
* ** * * * * *
70026488 GGATATTTGGGTAATTTTATAAACCGGGGGTA-TT-GGTAATTTTACAAGTCGA
1 GGGTATTTCAGTAATTTTACAAATCGAGGGTATTTCGATAATTTTACAAATCGA
* *
70026540 GGGTA-TTCAGTCATTTTACAAATCGAGGGTATTTC-AGTAATTTTGCAAA-CTGA
1 GGGTATTTCAGTAATTTTACAAATCGAGGGTATTTCGA-TAATTTTACAAATC-GA
* **
70026593 GGGTATTTCGGTAATTTTACAAATCGAGGGTATTTTAATAATTTTAC-AATCGA
1 GGGTATTTCAGTAATTTTACAAATCGAGGGTATTTCGATAATTTTACAAATCGA
* * * * * * *
70026646 CGGTATTTC-GATAATTTTATAAACCGGGGGTACTTT-GGTAATTTTACAACT-GG
1 GGGTATTTCAG-TAATTTTACAAATCGAGGGTA-TTTCGATAATTTTACAAATCGA
70026699 GGGTATTTCAGTAATTT
1 GGGTATTTCAGTAATTT
70026716 GGTAAACTAA
Statistics
Matches: 275, Mismatches: 44, Indels: 33
0.78 0.12 0.09
Matches are distributed among these distances:
51 20 0.07
52 24 0.09
53 123 0.45
54 103 0.37
55 5 0.02
ACGTcount: A:0.31, C:0.11, G:0.21, T:0.37
Consensus pattern (54 bp):
GGGTATTTCAGTAATTTTACAAATCGAGGGTATTTCGATAATTTTACAAATCGA
Found at i:70026502 original size:80 final size:79
Alignment explanation
Indices: 70026375--70026715 Score: 374
Period size: 80 Copynumber: 4.3 Consensus size: 79
70026365 TAATTCTATA
* *
70026375 AATCGGGGGTACTTT-GATAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAATCGAGGGT
1 AATCGAGGGTA-TTTCGATAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAACCGAGGGT
*
70026439 ATTTCAGTAATTTTAC
65 ATTT-GGTAATTTTAC
* * ** * *
70026455 AATCGACGGTATTTCGATAATTTTACAAATCGAGGATATTTGGGTAATTTTATAAACCGGGGGTA
1 AATCGAGGGTATTTCGATAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAACCGAGGGTA
70026520 -TTGGTAATTTTAC
66 TTTGGTAATTTTAC
* * *
70026533 AAGTCGAGGGTA-TTC-AGTCATTTTACAAATCGAGGGTATTTCAGTAATTTTGCAAACTGAGGG
1 AA-TCGAGGGTATTTCGA-TAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAACCGAGGG
70026596 TATTTCGGTAATTTTAC
64 TATTT-GGTAATTTTAC
** * * *
70026613 AAATCGAGGGTATTTTAATAATTTTAC-AATCGACGGTATTTC-GATAATTTTATAAACCGGGGG
1 -AATCGAGGGTATTTCGATAATTTTACAAATCGAGGGTATTTCAG-TAATTTTACAAACCGAGGG
70026676 TACTTTGGTAATTTTAC
64 TA-TTTGGTAATTTTAC
*
70026693 AA-CTGGGGGTATTTC-AGTAATTT
1 AATC-GAGGGTATTTCGA-TAATTT
70026716 GGTAAACTAA
Statistics
Matches: 222, Mismatches: 27, Indels: 25
0.81 0.10 0.09
Matches are distributed among these distances:
77 1 0.00
78 57 0.26
79 33 0.15
80 115 0.52
81 15 0.07
82 1 0.00
ACGTcount: A:0.30, C:0.11, G:0.21, T:0.38
Consensus pattern (79 bp):
AATCGAGGGTATTTCGATAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAACCGAGGGTA
TTTGGTAATTTTAC
Found at i:70026571 original size:105 final size:104
Alignment explanation
Indices: 70026392--70026652 Score: 321
Period size: 105 Copynumber: 2.5 Consensus size: 104
70026382 GGTACTTTGA
*
70026392 TAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAA
1 TAATTTTACAAACCGAGGGTATTT-AGTAATTTTAC-AATCGAGGGTA-TTCAGTAATTTTACAA
*
70026457 TCGACGGTATTTC-GATAATTTTACAAA-TCGAGGATATTTGGG
63 TCGACGGTATTTCAG-TAATTTTACAAACT-GAGGATATTTCGG
* * * *
70026499 TAATTTTATAAACCGGGGGTA-TTGGTAATTTTACAAGTCGAGGGTATTCAGTCATTTTACAAAT
1 TAATTTTACAAACCGAGGGTATTTAGTAATTTTACAA-TCGAGGGTATTCAGTAATTTTAC-AAT
* * *
70026563 CGAGGGTATTTCAGTAATTTTGCAAACTGAGGGTATTTCGG
64 CGACGGTATTTCAGTAATTTTACAAACTGAGGATATTTCGG
* * *
70026604 TAATTTTACAAATCGAGGGTATTTTAATAATTTTACAATCGACGGTATT
1 TAATTTTACAAACCGAGGGTA-TTTAGTAATTTTACAATCGAGGGTATT
70026653 TCGATAATTT
Statistics
Matches: 133, Mismatches: 15, Indels: 13
0.83 0.09 0.08
Matches are distributed among these distances:
104 15 0.11
105 73 0.55
106 14 0.11
107 31 0.23
ACGTcount: A:0.31, C:0.11, G:0.20, T:0.38
Consensus pattern (104 bp):
TAATTTTACAAACCGAGGGTATTTAGTAATTTTACAATCGAGGGTATTCAGTAATTTTACAATCG
ACGGTATTTCAGTAATTTTACAAACTGAGGATATTTCGG
Found at i:70026800 original size:27 final size:27
Alignment explanation
Indices: 70026762--70026813 Score: 95
Period size: 27 Copynumber: 1.9 Consensus size: 27
70026752 GAATGGGCTT
70026762 AAGCCCTTCTCGGCCCAAATCGGCCTA
1 AAGCCCTTCTCGGCCCAAATCGGCCTA
*
70026789 AAGCCCTTCTCGGCCCAAATGGGCC
1 AAGCCCTTCTCGGCCCAAATCGGCC
70026814 CACACGCTCG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.21, C:0.40, G:0.21, T:0.17
Consensus pattern (27 bp):
AAGCCCTTCTCGGCCCAAATCGGCCTA
Found at i:70030029 original size:19 final size:18
Alignment explanation
Indices: 70029989--70030029 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 18
70029979 AATATTATAC
*
70029989 ATTTCAATTTCACATTAA
1 ATTTCAATTTCACACTAA
*
70030007 ATTTCAATTTTCACACTAT
1 ATTTCAA-TTTCACACTAA
70030026 ATTT
1 ATTT
70030030 TGCTTATTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 7 0.35
19 13 0.65
ACGTcount: A:0.34, C:0.17, G:0.00, T:0.49
Consensus pattern (18 bp):
ATTTCAATTTCACACTAA
Found at i:70035553 original size:50 final size:50
Alignment explanation
Indices: 70035427--70035624 Score: 189
Period size: 50 Copynumber: 3.9 Consensus size: 50
70035417 TTGTGTTCAA
** * * * * *
70035427 AACCATCTATTACACATAGTGGCCTGCACTTAGTACCACACATGTGATCG
1 AACCATCTGGTACACATAGTAGCTTGCACTTAGTACTACACATGTGACCT
* * ** * *
70035477 AAGCTATCGGGTATGCATAGTAGCTTGCACTTAGTACTACATATGCGACCT
1 AA-CCATCTGGTACACATAGTAGCTTGCACTTAGTACTACACATGTGACCT
* *
70035528 AACCATCTGGTACACATAGTAGCTTGCCCTTAGTACTACACACGTGACCT
1 AACCATCTGGTACACATAGTAGCTTGCACTTAGTACTACACATGTGACCT
* *** *
70035578 AAAACCATTTTAAACACATAGTAGCTTGCACATAGTACTACACATGT
1 --AACCATCTGGTACACATAGTAGCTTGCACTTAGTACTACACATGT
70035625 TCTCACAATG
Statistics
Matches: 117, Mismatches: 28, Indels: 4
0.79 0.19 0.03
Matches are distributed among these distances:
50 42 0.36
51 37 0.32
52 38 0.32
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.27
Consensus pattern (50 bp):
AACCATCTGGTACACATAGTAGCTTGCACTTAGTACTACACATGTGACCT
Found at i:70035604 original size:52 final size:50
Alignment explanation
Indices: 70035492--70035621 Score: 161
Period size: 52 Copynumber: 2.6 Consensus size: 50
70035482 ATCGGGTATG
* * **
70035492 CATAGTAGCTTGCACTTAGTACTACATATGCGACCTAACCATCTGGTACA
1 CATAGTAGCTTGCACTTAGTACTACACACGCGACCTAACCATCTGAAACA
* * * *
70035542 CATAGTAGCTTGCCCTTAGTACTACACACGTGACCTAAAACCATTTTAAACA
1 CATAGTAGCTTGCACTTAGTACTACACACGCGACCT--AACCATCTGAAACA
*
70035594 CATAGTAGCTTGCACATAGTACTACACA
1 CATAGTAGCTTGCACTTAGTACTACACA
70035622 TGTTCTCACA
Statistics
Matches: 68, Mismatches: 10, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
50 32 0.47
52 36 0.53
ACGTcount: A:0.33, C:0.26, G:0.14, T:0.27
Consensus pattern (50 bp):
CATAGTAGCTTGCACTTAGTACTACACACGCGACCTAACCATCTGAAACA
Found at i:70039080 original size:37 final size:37
Alignment explanation
Indices: 70039029--70039103 Score: 123
Period size: 37 Copynumber: 2.0 Consensus size: 37
70039019 TTGCTTATAT
* * *
70039029 TTTTCTAGACTTAATTTGAGTTTTTGGACCCTTCTAA
1 TTTTCTAGAATTAATTTGAGTTTTTGAACCCTCCTAA
70039066 TTTTCTAGAATTAATTTGAGTTTTTGAACCCTCCTAA
1 TTTTCTAGAATTAATTTGAGTTTTTGAACCCTCCTAA
70039103 T
1 T
70039104 AATCTTTTAA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.24, C:0.16, G:0.12, T:0.48
Consensus pattern (37 bp):
TTTTCTAGAATTAATTTGAGTTTTTGAACCCTCCTAA
Found at i:70047542 original size:79 final size:81
Alignment explanation
Indices: 70047406--70047588 Score: 223
Period size: 79 Copynumber: 2.3 Consensus size: 81
70047396 TCGAATGATG
* *
70047406 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
70047470 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
70047485 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
70047547 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
70047565 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
70047589 TGAACGAGTA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.65
80 30 0.34
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:70047604 original size:40 final size:40
Alignment explanation
Indices: 70047407--70047590 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
70047397 CGAATGATGT
* * * *
70047407 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
70047447 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
*
70047487 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
70047525 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
70047566 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
70047591 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 34 0.27
40 80 0.65
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:70047612 original size:79 final size:79
Alignment explanation
Indices: 70047459--70047623 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
70047449 GGACTAAGAT
* **
70047459 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
70047524 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * *
70047538 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
70047601 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
70047617 CCGAAGG
1 CCGAAGG
70047624 TACGTGATTC
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.65
80 24 0.32
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:70055714 original size:79 final size:81
Alignment explanation
Indices: 70055578--70055760 Score: 223
Period size: 79 Copynumber: 2.3 Consensus size: 81
70055568 TCGAATGATG
* *
70055578 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
70055642 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
70055657 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
70055719 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
70055737 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
70055761 TGAACGAGTA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.65
80 30 0.34
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:70055776 original size:40 final size:40
Alignment explanation
Indices: 70055579--70055762 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
70055569 CGAATGATGT
* * * *
70055579 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
70055619 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
*
70055659 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
70055697 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
70055738 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
70055763 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 34 0.27
40 80 0.65
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:70055784 original size:79 final size:79
Alignment explanation
Indices: 70055631--70055795 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
70055621 GGACTAAGAT
* **
70055631 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
70055696 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * *
70055710 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
70055773 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
70055789 CCGAAGG
1 CCGAAGG
70055796 TACGTGATTC
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.65
80 24 0.32
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:70065873 original size:77 final size:80
Alignment explanation
Indices: 70065739--70065919 Score: 212
Period size: 77 Copynumber: 2.3 Consensus size: 80
70065729 TCGAATGATG
* *
70065739 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
70065803 TGTGCGA-TACTA-A
66 TGTGCGAGTACTATA
* * * **
70065816 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
70065878 TTTGTGCGAGTTACTATA
64 TTTGTGCGAG-TACTATA
* *
70065896 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
70065920 TGAACGAGTA
Statistics
Matches: 88, Mismatches: 9, Indels: 10
0.82 0.08 0.09
Matches are distributed among these distances:
76 1 0.01
77 43 0.49
78 17 0.19
79 14 0.16
80 13 0.15
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGTACTATA
Found at i:70065928 original size:40 final size:40
Alignment explanation
Indices: 70065739--70065921 Score: 216
Period size: 40 Copynumber: 4.7 Consensus size: 40
70065729 TCGAATGATG
* * * *
70065739 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
70065779 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGA--TACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
70065817 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
70065856 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
70065897 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
70065922 AACGAGTAGC
Statistics
Matches: 123, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
37 17 0.14
38 13 0.11
39 16 0.13
40 67 0.54
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:70065952 original size:79 final size:77
Alignment explanation
Indices: 70065791--70065954 Score: 190
Period size: 79 Copynumber: 2.1 Consensus size: 77
70065781 CGGACTAAGA
* **
70065791 TCCGAAGGCATTTGTGCGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGAAGGCATTTGTGCGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAA
*
70065856 TCCGGGTTAAGT
66 TCCGGGTTAAAT
* * *
70065868 CCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAG
1 TCCGAAGGCATTTGTGCGA--TACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-
*
70065931 CTATATCC-GGTTAAAT
61 CTAAATCCGGGTTAAAT
70065947 TCCGAAGG
1 TCCGAAGG
70065955 TACGTGATTC
Statistics
Matches: 73, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
77 18 0.25
78 2 0.03
79 29 0.40
80 24 0.33
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (77 bp):
TCCGAAGGCATTTGTGCGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAA
TCCGGGTTAAAT
Found at i:70074019 original size:79 final size:81
Alignment explanation
Indices: 70073883--70074065 Score: 223
Period size: 79 Copynumber: 2.3 Consensus size: 81
70073873 TCGAATGATG
* *
70073883 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
70073947 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
70073962 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
70074024 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
70074042 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
70074066 TGAACGAGTA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.65
80 30 0.34
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:70074081 original size:40 final size:40
Alignment explanation
Indices: 70073884--70074067 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
70073874 CGAATGATGT
* * * *
70073884 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
70073924 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
*
70073964 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
70074002 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
70074043 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
70074068 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 34 0.27
40 80 0.65
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:70074089 original size:79 final size:79
Alignment explanation
Indices: 70073936--70074100 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
70073926 GGACTAAGAT
* **
70073936 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
70074001 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * *
70074015 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
70074078 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
70074094 CCGAAGG
1 CCGAAGG
70074101 TACGTGATTC
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.65
80 24 0.32
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:70088323 original size:27 final size:27
Alignment explanation
Indices: 70088271--70088323 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
70088261 GACCCCGATT
**
70088271 TGTAAAATTATCGAAATACCTTTGTAG
1 TGTAAAATTATCGAAATACCCCTGTAG
*
70088298 TGTAAAATTATCGTAATACCCCTGTA
1 TGTAAAATTATCGAAATACCCCTGTA
70088324 TGGTAGAATG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.36, C:0.15, G:0.13, T:0.36
Consensus pattern (27 bp):
TGTAAAATTATCGAAATACCCCTGTAG
Found at i:70104277 original size:28 final size:28
Alignment explanation
Indices: 70104237--70104292 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
70104227 CAATAAGGAG
*
70104237 TTTCCAATCATGGTACTTCTTCTGGACT
1 TTTCCAATCATGGTACTTCTTCTAGACT
70104265 TTTCCAATCATGGTACTTCTTCTAGACT
1 TTTCCAATCATGGTACTTCTTCTAGACT
70104293 GACTCCATGA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.20, C:0.25, G:0.12, T:0.43
Consensus pattern (28 bp):
TTTCCAATCATGGTACTTCTTCTAGACT
Found at i:70105342 original size:13 final size:13
Alignment explanation
Indices: 70105324--70105348 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
70105314 TTTTTGACTC
70105324 AAAAGTGCTTTTT
1 AAAAGTGCTTTTT
70105337 AAAAGTGCTTTT
1 AAAAGTGCTTTT
70105349 CAACCCAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.08, G:0.16, T:0.44
Consensus pattern (13 bp):
AAAAGTGCTTTTT
Found at i:70106622 original size:137 final size:138
Alignment explanation
Indices: 70106465--70106747 Score: 460
Period size: 138 Copynumber: 2.1 Consensus size: 138
70106455 AAGAAGATAG
* *
70106465 ATATAATTAATATATCAATTTGATTCATACAAAATATCAATTGTATATATTTTACTGGA-TTATT
1 ATATAATTAATATATCAATTTGATTCATACAAAATATCAATTGTATATATTTTACCGAATTTATT
* *
70106529 AATATAAACAGTTATATTAATTAATTTCAGTCAAAATATAAAAGACATGGAAATTAATATTCTCT
66 AATATAAAAAATTATATTAATTAATTTCAGTCAAAATATAAAAGACATGGAAATTAATATTCTCT
70106594 TGGAAAGA
131 TGGAAAGA
* * *
70106602 ATATAATTACTATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCGAATTTATT
1 ATATAATTAATATATCAATTTGATTCATACAAAATATCAATTGTATATATTTTACCGAATTTATT
* * *
70106667 AATATAAAAAATTATATTAATTAATTTCTGTCAAAATATAAAAGACGTGGAAATTAATATTCTTT
66 AATATAAAAAATTATATTAATTAATTTCAGTCAAAATATAAAAGACATGGAAATTAATATTCTCT
*
70106732 TTGAAAGA
131 TGGAAAGA
70106740 ATATAATT
1 ATATAATT
70106748 CATTTTTCTA
Statistics
Matches: 134, Mismatches: 11, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
137 54 0.40
138 80 0.60
ACGTcount: A:0.45, C:0.07, G:0.08, T:0.40
Consensus pattern (138 bp):
ATATAATTAATATATCAATTTGATTCATACAAAATATCAATTGTATATATTTTACCGAATTTATT
AATATAAAAAATTATATTAATTAATTTCAGTCAAAATATAAAAGACATGGAAATTAATATTCTCT
TGGAAAGA
Found at i:70106815 original size:75 final size:75
Alignment explanation
Indices: 70106729--70106872 Score: 261
Period size: 75 Copynumber: 1.9 Consensus size: 75
70106719 ATTAATATTC
*
70106729 TTTTTGAAAGAATATAATTCATTTTTCTAACTTTCCATTTGTCTTCTCTATTAATAAGAGAATAA
1 TTTTGGAAAGAATATAATTCATTTTTCTAACTTTCCATTTGTCTTCTCTATTAATAAGAGAATAA
70106794 TCCTATAATA
66 TCCTATAATA
* *
70106804 TTTTGGAAAGAATATAATTCATTTTTCTAACTTTCCATTTGTGTTCTCTATTAATAAGGGAATAA
1 TTTTGGAAAGAATATAATTCATTTTTCTAACTTTCCATTTGTCTTCTCTATTAATAAGAGAATAA
70106869 TCCT
66 TCCT
70106873 GGTTTTCCTC
Statistics
Matches: 66, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
75 66 1.00
ACGTcount: A:0.33, C:0.13, G:0.09, T:0.45
Consensus pattern (75 bp):
TTTTGGAAAGAATATAATTCATTTTTCTAACTTTCCATTTGTCTTCTCTATTAATAAGAGAATAA
TCCTATAATA
Found at i:70109378 original size:27 final size:27
Alignment explanation
Indices: 70109348--70109423 Score: 107
Period size: 27 Copynumber: 2.8 Consensus size: 27
70109338 TCTCTTATGA
70109348 ACCTTGTGTTTAGTGTCTCGATGGACT
1 ACCTTGTGTTTAGTGTCTCGATGGACT
*
70109375 ACCTTGTGTTTAGTGTCTCGGTGGACT
1 ACCTTGTGTTTAGTGTCTCGATGGACT
** * *
70109402 ACCTCATGTTTATTGTCCCGAT
1 ACCTTGTGTTTAGTGTCTCGAT
70109424 AAGCTATTCT
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 43 1.00
ACGTcount: A:0.14, C:0.21, G:0.24, T:0.41
Consensus pattern (27 bp):
ACCTTGTGTTTAGTGTCTCGATGGACT
Found at i:70113627 original size:51 final size:50
Alignment explanation
Indices: 70113558--70113680 Score: 151
Period size: 49 Copynumber: 2.5 Consensus size: 50
70113548 CCGGTGGCTG
*
70113558 CACATAGTACCACCCTTGTAGTCAAAGCTACCTTCTTCACAAAGTGGCATT
1 CACATAGTACCACACTTGTAGTCAAAGCTACC-TCTTCACAAAGTGGCATT
* * * * * *
70113609 CACATAGTATCACACTTGT-GACCAAGCTATCTCTTCTCAAAGTGGCCTT
1 CACATAGTACCACACTTGTAGTCAAAGCTACCTCTTCACAAAGTGGCATT
*
70113658 CAGATAGTACCACACTTG-AGTCA
1 CACATAGTACCACACTTGTAGTCA
70113681 CTAGTGATAT
Statistics
Matches: 60, Mismatches: 11, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
49 34 0.57
50 9 0.15
51 17 0.28
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.28
Consensus pattern (50 bp):
CACATAGTACCACACTTGTAGTCAAAGCTACCTCTTCACAAAGTGGCATT
Found at i:70118580 original size:54 final size:54
Alignment explanation
Indices: 70118417--70118583 Score: 210
Period size: 54 Copynumber: 3.1 Consensus size: 54
70118407 AGCATGGCTG
* * * *
70118417 CCAGATACAGATA-ATGTGACAGAGTCACCAGATACAGATAATTGTGGCAGAGCCA
1 CCAGA-ACAGATATATGTGGCAGAGCCACCAGAT-TAGATAATTGTGGCATAGCCA
* * ** * * *
70118472 ACATAACTTATATATGTGGTAGAGCCACCAGATTAAATAATCGTGGCATAGCCA
1 CCAGAACAGATATATGTGGCAGAGCCACCAGATTAGATAATTGTGGCATAGCCA
70118526 CCAGAACAGATATATGTGGCAGAGCCACCAGATTAGATAATTGTGGCATAGCCA
1 CCAGAACAGATATATGTGGCAGAGCCACCAGATTAGATAATTGTGGCATAGCCA
70118580 CCAG
1 CCAG
70118584 GACGCTTCCT
Statistics
Matches: 93, Mismatches: 18, Indels: 3
0.82 0.16 0.03
Matches are distributed among these distances:
54 73 0.78
55 20 0.22
ACGTcount: A:0.37, C:0.20, G:0.22, T:0.21
Consensus pattern (54 bp):
CCAGAACAGATATATGTGGCAGAGCCACCAGATTAGATAATTGTGGCATAGCCA
Found at i:70118583 original size:27 final size:27
Alignment explanation
Indices: 70118425--70118583 Score: 137
Period size: 27 Copynumber: 5.9 Consensus size: 27
70118415 TGCCAGATAC
* * *
70118425 AGATAA-TGTGACAGAGTCACCAGATAC
1 AGATAATTGTGGCAGAGCCACCAGAT-T
* *
70118452 AGATAATTGTGGCAGAGCCAACATAACTT
1 AGATAATTGTGGCAGAGCCACCA-GA-TT
* *
70118481 ATAT-A-TGTGGTAGAGCCACCAGATT
1 AGATAATTGTGGCAGAGCCACCAGATT
* * * **
70118506 AAATAATCGTGGCATAGCCACCAGAAC
1 AGATAATTGTGGCAGAGCCACCAGATT
70118533 AGAT-ATATGTGGCAGAGCCACCAGATT
1 AGATAAT-TGTGGCAGAGCCACCAGATT
*
70118560 AGATAATTGTGGCATAGCCACCAG
1 AGATAATTGTGGCAGAGCCACCAG
70118584 GACGCTTCCT
Statistics
Matches: 104, Mismatches: 21, Indels: 14
0.75 0.15 0.10
Matches are distributed among these distances:
25 5 0.05
26 4 0.04
27 74 0.71
28 16 0.15
29 4 0.04
30 1 0.01
ACGTcount: A:0.36, C:0.19, G:0.23, T:0.21
Consensus pattern (27 bp):
AGATAATTGTGGCAGAGCCACCAGATT
Found at i:70129779 original size:43 final size:42
Alignment explanation
Indices: 70129718--70129872 Score: 165
Period size: 43 Copynumber: 3.7 Consensus size: 42
70129708 GGGGTGTTAC
* *
70129718 AGACCATGTTTGGGACATTGGCATTGTATTGTTATTACGTGTA
1 AGACCATGTCTGGGACATTGGCATTGTATTG-TATTACATGTA
*
70129761 AGACCATGTCTGGGACATTGGCATCAT-TATATG-ATTTCATGTA
1 AGACCATGTCTGGGACATTGGCAT--TGTAT-TGTATTACATGTA
* * *
70129804 AGACCATGTCTGGGACATTGGTATCG-ATTGTGATAACATGTA
1 AGACCATGTCTGGGACATTGGCATTGTATTGT-ATTACATGTA
* *
70129846 AGACCATATCTGGGATA-TGGCATTGTA
1 AGACCATGTCTGGGACATTGGCATTGTA
70129873 CGAGCTATAT
Statistics
Matches: 94, Mismatches: 11, Indels: 15
0.78 0.09 0.12
Matches are distributed among these distances:
40 2 0.02
41 8 0.09
42 24 0.26
43 54 0.57
44 3 0.03
45 3 0.03
ACGTcount: A:0.27, C:0.14, G:0.25, T:0.34
Consensus pattern (42 bp):
AGACCATGTCTGGGACATTGGCATTGTATTGTATTACATGTA
Found at i:70131499 original size:40 final size:40
Alignment explanation
Indices: 70131422--70131558 Score: 163
Period size: 40 Copynumber: 3.5 Consensus size: 40
70131412 ACCCAAGTAT
70131422 CTTCGGGAT-TTAG-CCGGATATAACAACTCGCACAAATGC
1 CTTCGGG-TCTTAGCCCGGATATAACAACTCGCACAAATGC
* *
70131461 CTTCGGGTCTTAGCCCGGATATAATC-ACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATATAA-CAACTCGCACAAATGC
* * * *
70131501 CTTCGGGACATAGCCCGGATATAGCAACTCGCACGAATGC
1 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGC
* *
70131541 CTTCGGATCTTAGTCCGG
1 CTTCGGGTCTTAGCCCGG
70131559 TTATCATCTG
Statistics
Matches: 82, Mismatches: 12, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
38 1 0.01
39 12 0.15
40 68 0.83
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGC
Found at i:70144879 original size:52 final size:52
Alignment explanation
Indices: 70144819--70144926 Score: 198
Period size: 52 Copynumber: 2.1 Consensus size: 52
70144809 GAATTGGATT
70144819 TTTAGACCATACTTAAATAAGTTTGTGGTTGTGTTTATCGATAATATTTTGA
1 TTTAGACCATACTTAAATAAGTTTGTGGTTGTGTTTATCGATAATATTTTGA
* *
70144871 TTTAGACCATACTTAAATAAGTTTGTGGTTGTGTTTGTCGATTATATTTTGA
1 TTTAGACCATACTTAAATAAGTTTGTGGTTGTGTTTATCGATAATATTTTGA
70144923 TTTA
1 TTTA
70144927 TTCTCAAAAT
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 54 1.00
ACGTcount: A:0.27, C:0.07, G:0.18, T:0.48
Consensus pattern (52 bp):
TTTAGACCATACTTAAATAAGTTTGTGGTTGTGTTTATCGATAATATTTTGA
Found at i:70146635 original size:12 final size:12
Alignment explanation
Indices: 70146618--70146642 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
70146608 TGACATCTCG
70146618 TATGATATTTGA
1 TATGATATTTGA
70146630 TATGATATTTGA
1 TATGATATTTGA
70146642 T
1 T
70146643 GCATTTCAAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.00, G:0.16, T:0.52
Consensus pattern (12 bp):
TATGATATTTGA
Found at i:70146938 original size:28 final size:27
Alignment explanation
Indices: 70146898--70146967 Score: 97
Period size: 28 Copynumber: 2.5 Consensus size: 27
70146888 ATAGTAAGTC
70146898 CGCACACTTAGTGCTTAATAC-TCAAACT
1 CGCACACTTAGTGC-T-ATACATCAAACT
*
70146926 CGCACACTTAGTGCTATACAATTAAACT
1 CGCACACTTAGTGCTATAC-ATCAAACT
70146954 CGCACACTTAGTGC
1 CGCACACTTAGTGC
70146968 CAATCTCATT
Statistics
Matches: 39, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
26 4 0.10
27 1 0.03
28 34 0.87
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTATACATCAAACT
Found at i:70158621 original size:48 final size:48
Alignment explanation
Indices: 70158466--70158838 Score: 356
Period size: 48 Copynumber: 7.7 Consensus size: 48
70158456 AAAGGTTAAG
* *
70158466 ATGCCGATGCCATGCCCCAAACATGGTCTTACACTGGCTCTCATAT--
1 ATGCCGATGCCATGTCCCAAACATGGTCTTACACTCGCTCTCATATCA
* * * * * * * *
70158512 ATCGGCACCGATACCATGTTCCAAACATGGTCTTACACTAGCCCACGTGTCG
1 AT--G--CCGATGCCATGTCCCAAACATGGTCTTACACTCGCTCTCATATCA
* * * * * *
70158564 AGGCTGATGCCATGTCCCAGATATAGTCTTACATTCGCTCTCATATCA
1 ATGCCGATGCCATGTCCCAAACATGGTCTTACACTCGCTCTCATATCA
* ** * * *
70158612 ATGCCGATGCCATGTTCCAAACATGGTCTTACGTTGGCTCACATATCG
1 ATGCCGATGCCATGTCCCAAACATGGTCTTACACTCGCTCTCATATCA
* * *
70158660 AGGCTGATGCCATGTCCCAAACATGGTCTTACACTCGCTTTCATATCA
1 ATGCCGATGCCATGTCCCAAACATGGTCTTACACTCGCTCTCATATCA
* * * * *
70158708 ATACCGATGCCATGTTCCAAACATGGTCTTGCACTGGCT-TACATATCG
1 ATGCCGATGCCATGTCCCAAACATGGTCTTACACTCGCTCT-CATATCA
* * * *
70158756 AGGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTTATATCA
1 ATGCCGATGCCATGTCCCAAACATGGTCTTACACTCGCTCTCATATCA
* *
70158804 ATGCCGATGTCATGTTCCAAACATGGTCTTACACT
1 ATGCCGATGCCATGTCCCAAACATGGTCTTACACT
70158839 GGATCACATA
Statistics
Matches: 259, Mismatches: 60, Indels: 14
0.78 0.18 0.04
Matches are distributed among these distances:
46 2 0.01
47 1 0.00
48 218 0.84
49 1 0.00
50 36 0.14
52 1 0.00
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (48 bp):
ATGCCGATGCCATGTCCCAAACATGGTCTTACACTCGCTCTCATATCA
Found at i:70158637 original size:96 final size:96
Alignment explanation
Indices: 70158471--70158848 Score: 499
Period size: 96 Copynumber: 3.9 Consensus size: 96
70158461 TTAAGATGCC
* * * *
70158471 GATGCCATGCCCCAAACATGGTCTTACACTGGCTCTCATAT--ATCGGCACCGATACCATGTTCC
1 GATGCCATGTCCCAGACATGGTCTTACACTCGCTCTCATATCAAT--G--CCGATGCCATGTTCC
* * * *
70158534 AAACATGGTCTTACACTAGCCCACGTGTCGAGGCT
62 AAACATGGTCTTACACTGGCTCACATATCGAGGCT
* * *
70158569 GATGCCATGTCCCAGATATAGTCTTACATTCGCTCTCATATCAATGCCGATGCCATGTTCCAAAC
1 GATGCCATGTCCCAGACATGGTCTTACACTCGCTCTCATATCAATGCCGATGCCATGTTCCAAAC
**
70158634 ATGGTCTTACGTTGGCTCACATATCGAGGCT
66 ATGGTCTTACACTGGCTCACATATCGAGGCT
* * *
70158665 GATGCCATGTCCCAAACATGGTCTTACACTCGCTTTCATATCAATACCGATGCCATGTTCCAAAC
1 GATGCCATGTCCCAGACATGGTCTTACACTCGCTCTCATATCAATGCCGATGCCATGTTCCAAAC
* * *
70158730 ATGGTCTTGCACTGGCTTACATATCGAGGCC
66 ATGGTCTTACACTGGCTCACATATCGAGGCT
* * *
70158761 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTTATATCAATGCCGATGTCATGTTCCAAAC
1 GATGCCATGTCCCAGACATGGTCTTACACTCGCTCTCATATCAATGCCGATGCCATGTTCCAAAC
*
70158826 ATGGTCTTACACTGGATCACATA
66 ATGGTCTTACACTGGCTCACATA
70158849 ACCCTAGTAT
Statistics
Matches: 245, Mismatches: 33, Indels: 6
0.86 0.12 0.02
Matches are distributed among these distances:
96 207 0.84
98 36 0.15
100 2 0.01
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (96 bp):
GATGCCATGTCCCAGACATGGTCTTACACTCGCTCTCATATCAATGCCGATGCCATGTTCCAAAC
ATGGTCTTACACTGGCTCACATATCGAGGCT
Found at i:70166340 original size:48 final size:48
Alignment explanation
Indices: 70166185--70166556 Score: 322
Period size: 48 Copynumber: 7.7 Consensus size: 48
70166175 AAAAGGGTAA
* *
70166185 GATGTCGATTCCATGTCCCAAACATGGTCTTACACTGACTCTCATATATC
1 GATGTCGATGCCATGTCCCAAACATGGTCTTACACTTACTCTC--ATATC
* * * * * * * * *
70166235 AATGTCGATTCTATGTTCCAAACATGGTCTTACAC-TAGCCCACTTGTT
1 GATGTCGATGCCATGTCCCAAACATGGTCTTACACTTA-CTCTCATATC
* * *
70166283 GAGGTCGATGCCATGTCCCAAATATAGTCTTACACTTACTCTCATATC
1 GATGTCGATGCCATGTCCCAAACATGGTCTTACACTTACTCTCATATC
* * * *
70166331 GATGCCGATGCCATG-CTCCAAACATGGTCTTATA-TTGGCTCACATATC
1 GATGTCGATGCCATGTC-CCAAACATGGTCTTACACTT-ACTCTCATATC
* * *
70166379 GAGGCCGATGCCATGTCCCAGACATGGTCTTACAC-TAGCTCTCATATC
1 GATGTCGATGCCATGTCCCAAACATGGTCTTACACTTA-CTCTCATATC
* * * ** ** * *
70166427 AATGCCAATGCCATGTTTCAAACATGGTCTTACACTGGCTCACATGTC
1 GATGTCGATGCCATGTCCCAAACATGGTCTTACACTTACTCTCATATC
* * * *
70166475 GAGGGCGATGCCATATCCCAAACATGGTCTTACAC-TAGCTCTCTTATC
1 GATGTCGATGCCATGTCCCAAACATGGTCTTACACTTA-CTCTCATATC
* *
70166523 AATGTCGATGCCATGTTCCAAACATGGTCTTACA
1 GATGTCGATGCCATGTCCCAAACATGGTCTTACA
70166557 GTGGATCACA
Statistics
Matches: 253, Mismatches: 60, Indels: 20
0.76 0.18 0.06
Matches are distributed among these distances:
47 3 0.01
48 211 0.83
49 4 0.02
50 35 0.14
ACGTcount: A:0.26, C:0.27, G:0.17, T:0.30
Consensus pattern (48 bp):
GATGTCGATGCCATGTCCCAAACATGGTCTTACACTTACTCTCATATC
Found at i:70166394 original size:96 final size:96
Alignment explanation
Indices: 70166190--70166568 Score: 474
Period size: 96 Copynumber: 3.9 Consensus size: 96
70166180 GGTAAGATGT
* * * *
70166190 CGATTCCATGTCCCAAACATGGTCTTACACT-GACTCTCATATATCAATGTCGATTCTATGTTCC
1 CGATGCCATGTCCCAAACATGGTCTTACACTAG-CTCTC--ATATCAATGCCGATGCCATGTTCC
* * * * * *
70166254 AAACATGGTCTTACACTAGCCCACTTGTTGAGGT
63 AAACATGGTCTTACACTGGCTCACATATCGAGGC
* * * *
70166288 CGATGCCATGTCCCAAATATAGTCTTACACTTA-CTCTCATATCGATGCCGATGCCATGCTCCAA
1 CGATGCCATGTCCCAAACATGGTCTTACAC-TAGCTCTCATATCAATGCCGATGCCATGTTCCAA
* *
70166352 ACATGGTCTTATATTGGCTCACATATCGAGGC
65 ACATGGTCTTACACTGGCTCACATATCGAGGC
* * *
70166384 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCAATGCCAATGCCATGTTTCAAA
1 CGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATCAATGCCGATGCCATGTTCCAAA
* *
70166449 CATGGTCTTACACTGGCTCACATGTCGAGGG
66 CATGGTCTTACACTGGCTCACATATCGAGGC
* * *
70166480 CGATGCCATATCCCAAACATGGTCTTACACTAGCTCTCTTATCAATGTCGATGCCATGTTCCAAA
1 CGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATCAATGCCGATGCCATGTTCCAAA
* *
70166545 CATGGTCTTACAGTGGATCACATA
66 CATGGTCTTACACTGGCTCACATA
70166569 ACCCTAATGT
Statistics
Matches: 242, Mismatches: 36, Indels: 8
0.85 0.13 0.03
Matches are distributed among these distances:
95 2 0.01
96 207 0.86
98 32 0.13
99 1 0.00
ACGTcount: A:0.26, C:0.27, G:0.17, T:0.30
Consensus pattern (96 bp):
CGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATCAATGCCGATGCCATGTTCCAAA
CATGGTCTTACACTGGCTCACATATCGAGGC
Found at i:70166707 original size:21 final size:19
Alignment explanation
Indices: 70166666--70166708 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
70166656 AACAAAATCG
* *
70166666 ATAATTTCATGCAATATCA
1 ATAATTTAATGCAATAACA
70166685 ATAATTTAATGCATAATAACA
1 ATAATTTAATGC--AATAACA
70166706 ATA
1 ATA
70166709 GAGTTGTAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 11 0.55
21 9 0.45
ACGTcount: A:0.49, C:0.12, G:0.05, T:0.35
Consensus pattern (19 bp):
ATAATTTAATGCAATAACA
Found at i:70170257 original size:15 final size:15
Alignment explanation
Indices: 70170237--70170288 Score: 50
Period size: 15 Copynumber: 3.2 Consensus size: 15
70170227 ACTACAAAAC
70170237 ATTTATTATTAATAT
1 ATTTATTATTAATAT
*
70170252 ATTTATAATAGTAATAAAT
1 ATTTAT--TATTAAT--AT
*
70170271 ATTTATTATTAAAAT
1 ATTTATTATTAATAT
70170286 ATT
1 ATT
70170289 AATATTGAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
15 11 0.37
17 11 0.37
19 8 0.27
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (15 bp):
ATTTATTATTAATAT
Found at i:70170355 original size:19 final size:19
Alignment explanation
Indices: 70170321--70170360 Score: 64
Period size: 19 Copynumber: 2.1 Consensus size: 19
70170311 ATGTGAATAA
70170321 TATTATTTAAAATTATTAT
1 TATTATTTAAAATTATTAT
70170340 TATT-TTTAAAATTTATTAT
1 TATTATTTAAAA-TTATTAT
70170359 TA
1 TA
70170361 AAATAAAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 7 0.35
19 13 0.65
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (19 bp):
TATTATTTAAAATTATTAT
Found at i:70186058 original size:18 final size:18
Alignment explanation
Indices: 70186035--70186074 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
70186025 TCATTGTCGA
70186035 GTTTATCCTTGATAAAAT
1 GTTTATCCTTGATAAAAT
* **
70186053 GTTTATCTTTTTTAAAAT
1 GTTTATCCTTGATAAAAT
70186071 GTTT
1 GTTT
70186075 GATTCTTTCA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.28, C:0.07, G:0.10, T:0.55
Consensus pattern (18 bp):
GTTTATCCTTGATAAAAT
Found at i:70193244 original size:3 final size:3
Alignment explanation
Indices: 70193236--70193270 Score: 52
Period size: 3 Copynumber: 11.7 Consensus size: 3
70193226 CTGTGGTGAA
* *
70193236 ATT ATT ATT ATT ATT ATT ATT ATT GTT ATC ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
70193271 CATTTTTGCA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.31, C:0.03, G:0.03, T:0.63
Consensus pattern (3 bp):
ATT
Found at i:70205930 original size:82 final size:83
Alignment explanation
Indices: 70205784--70205952 Score: 295
Period size: 82 Copynumber: 2.0 Consensus size: 83
70205774 TCAATGATAT
70205784 ATTTCCTCCTAAACAAGAACATACCTTTCTTACTCCTAGTAACTTCAACTCCAATAACATATCTC
1 ATTTCCTCCTAAACAAGAACATACCTTTCTTACTCCTAGTAACTTCAACTCCAATAACATATCTC
*
70205849 ATCTACCATAAATCATTA
66 AACTACCATAAATCATTA
*
70205867 ATTT-CTCTTAAACAAGAACATACCTTTCTTACTCCTAGTAACTTCAACTCCAATAACATATCTC
1 ATTTCCTCCTAAACAAGAACATACCTTTCTTACTCCTAGTAACTTCAACTCCAATAACATATCTC
* *
70205931 AACTACCTTAAATCATTC
66 AACTACCATAAATCATTA
70205949 ATTT
1 ATTT
70205953 GAAAATAAGT
Statistics
Matches: 82, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
82 78 0.95
83 4 0.05
ACGTcount: A:0.36, C:0.28, G:0.02, T:0.34
Consensus pattern (83 bp):
ATTTCCTCCTAAACAAGAACATACCTTTCTTACTCCTAGTAACTTCAACTCCAATAACATATCTC
AACTACCATAAATCATTA
Found at i:70212083 original size:16 final size:16
Alignment explanation
Indices: 70212052--70212101 Score: 66
Period size: 16 Copynumber: 3.1 Consensus size: 16
70212042 AGATTTAATT
* *
70212052 TTGTAATCTTACAAGA
1 TTGTAATATTAGAAGA
70212068 TCT-TAATATTAGAAGA
1 T-TGTAATATTAGAAGA
70212084 TTGTAATATTAGAAGA
1 TTGTAATATTAGAAGA
70212100 TT
1 TT
70212102 TGATTTTGTA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
15 1 0.03
16 28 0.93
17 1 0.03
ACGTcount: A:0.40, C:0.06, G:0.14, T:0.40
Consensus pattern (16 bp):
TTGTAATATTAGAAGA
Found at i:70217634 original size:31 final size:31
Alignment explanation
Indices: 70217599--70217662 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
70217589 TCGGTCGTGC
* *
70217599 TCACTGTTGTTGTCCGCTTCTATTCTTTCTT
1 TCACTGTTGTTGCCCCCTTCTATTCTTTCTT
70217630 TCACTGTTGTTGCCCCCTTCTATTCTTTCTT
1 TCACTGTTGTTGCCCCCTTCTATTCTTTCTT
70217661 TC
1 TC
70217663 TTTATTTGTT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.06, C:0.30, G:0.11, T:0.53
Consensus pattern (31 bp):
TCACTGTTGTTGCCCCCTTCTATTCTTTCTT
Found at i:70223373 original size:21 final size:22
Alignment explanation
Indices: 70223336--70223376 Score: 59
Period size: 21 Copynumber: 1.9 Consensus size: 22
70223326 TAGAAGATCC
70223336 ATTTGCTGGAGCAGATGAAGAT
1 ATTTGCTGGAGCAGATGAAGAT
70223358 ATTTG-TGGAG-ACGATGAAG
1 ATTTGCTGGAGCA-GATGAAG
70223377 TGGAGTTGGC
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 1 0.06
21 12 0.67
22 5 0.28
ACGTcount: A:0.32, C:0.07, G:0.34, T:0.27
Consensus pattern (22 bp):
ATTTGCTGGAGCAGATGAAGAT
Found at i:70238908 original size:15 final size:16
Alignment explanation
Indices: 70238872--70238914 Score: 52
Period size: 15 Copynumber: 2.8 Consensus size: 16
70238862 CACATATACA
*
70238872 CATAATCTCATGAGTT
1 CATAATCACATGAGTT
70238888 CATAATCACAT-AGTT
1 CATAATCACATGAGTT
* *
70238903 CCTAATGACATG
1 CATAATCACATG
70238915 TCACATTGTA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
15 13 0.57
16 10 0.43
ACGTcount: A:0.35, C:0.21, G:0.12, T:0.33
Consensus pattern (16 bp):
CATAATCACATGAGTT
Found at i:70240986 original size:47 final size:46
Alignment explanation
Indices: 70240872--70241002 Score: 181
Period size: 47 Copynumber: 2.8 Consensus size: 46
70240862 GTGCGAATGA
* * *
70240872 TACCTTGATTTGGCTACGGGCCATGGTATAGGTATTTCAATGAGGAGT
1 TACCTTGATTT-GCTACGGGCCATGGTATAGGTA-CTCAAGGAGAAGT
* *
70240920 TACCTTGATTTAGCTACGGGCCATGGTATAGGTACTCCAGGATAAGT
1 TACCTTGATTT-GCTACGGGCCATGGTATAGGTACTCAAGGAGAAGT
70240967 TACCTTGATTTGCCTACGGGCCATGGTATAGGTACT
1 TACCTTGATTTG-CTACGGGCCATGGTATAGGTACT
70241003 TATTGATTGT
Statistics
Matches: 76, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
46 1 0.01
47 42 0.55
48 33 0.43
ACGTcount: A:0.23, C:0.18, G:0.27, T:0.32
Consensus pattern (46 bp):
TACCTTGATTTGCTACGGGCCATGGTATAGGTACTCAAGGAGAAGT
Found at i:70241020 original size:47 final size:46
Alignment explanation
Indices: 70240869--70241021 Score: 145
Period size: 47 Copynumber: 3.2 Consensus size: 46
70240859 TGAGTGCGAA
* *
70240869 TGATACCTTGATTTGGCTACGGGCCATGGTATAGGTATTTCAATGAGGAG
1 TGATACCTTGATTT-GCTACGGGCCATGGTATAGGTACTT--ATGA-TAG
* *
70240919 T--TACCTTGATTTAGCTACGGGCCATGGTATAGGTACTCCAGGATAAG
1 TGATACCTTGATTT-GCTACGGGCCATGGTATAGGTACT-TATGAT-AG
*
70240966 T--TACCTTGATTTGCCTACGGGCCATGGTATAGGTACTTATTGATTG
1 TGATACCTTGATTTG-CTACGGGCCATGGTATAGGTACTTA-TGATAG
70241012 TGAT-CCTTGA
1 TGATACCTTGA
70241022 GTATCTGACT
Statistics
Matches: 89, Mismatches: 8, Indels: 15
0.79 0.07 0.13
Matches are distributed among these distances:
46 4 0.04
47 49 0.55
48 35 0.39
50 1 0.01
ACGTcount: A:0.23, C:0.17, G:0.26, T:0.34
Consensus pattern (46 bp):
TGATACCTTGATTTGCTACGGGCCATGGTATAGGTACTTATGATAG
Found at i:70245350 original size:15 final size:15
Alignment explanation
Indices: 70245318--70245346 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
70245308 ATTTTCTATG
70245318 TTTATTATGTGTGAA
1 TTTATTATGTGTGAA
70245333 TTTA-TATGTGTGAA
1 TTTATTATGTGTGAA
70245347 ATTTTCGTGC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.28, C:0.00, G:0.21, T:0.52
Consensus pattern (15 bp):
TTTATTATGTGTGAA
Found at i:70252910 original size:97 final size:91
Alignment explanation
Indices: 70252736--70252956 Score: 212
Period size: 93 Copynumber: 2.4 Consensus size: 91
70252726 AGGGTACGAT
* *
70252736 GCCGACGCCATGTTCCAAACATGGTCTTACACTGGCTCTCACATCTAAGTCAGTGCCATGTCCCA
1 GCCGATGCCATGTCCCAAACA-GGTCTTACACTGGCTCTCACATCTAAGTCAGTGCCATGTCCCA
** * * *
70252801 GACAGGTTTTACACTGACTTCCATACGTCAA
65 GACAAATCTTACACTGA----CACACCTCAA
* * **
70252832 GGCC-ATGCCATGTCCCAGACAGGTCTTACACTGGCTCTCATTTATCTGTGTC-GATGCCATGTC
1 -GCCGATGCCATGTCCCAAACAGGTCTTACACTGGCTCTCA--CATCTAAGTCAG-TGCCATGTC
* *
70252895 TCAGACAAATCTTACATTGACACACCTCAA
62 CCAGACAAATCTTACACTGACACACCTCAA
* *
70252925 GCCGATGCCATATCCCATACAGGTCTTACACT
1 GCCGATGCCATGTCCCAAACAGGTCTTACACT
70252957 AGCTTATATA
Statistics
Matches: 105, Mismatches: 15, Indels: 12
0.80 0.11 0.09
Matches are distributed among these distances:
92 3 0.03
93 34 0.32
95 19 0.18
96 15 0.14
97 34 0.32
ACGTcount: A:0.25, C:0.31, G:0.17, T:0.27
Consensus pattern (91 bp):
GCCGATGCCATGTCCCAAACAGGTCTTACACTGGCTCTCACATCTAAGTCAGTGCCATGTCCCAG
ACAAATCTTACACTGACACACCTCAA
Done.