Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 215 of 349
Found at i:70252982 original size:93 final size:93
Alignment explanation
Indices: 70252828--70253003 Score: 205
Period size: 93 Copynumber: 1.9 Consensus size: 93
70252818 CTTCCATACG
* * * * * *
70252828 TCAAGGCCATGCCATGTCCCAGACAGGTCTTACACTGGCTCTCATTTATCTGTGTCGATGCCATG
1 TCAAGGCCATGCCATATCCCAGACAGGTCTTACACTAGCTCTCATATATCTGGGCCAATGCCATG
*
70252893 TCTCAGACAAATCTTACATTGACACACC
66 TCCCAGACAAATCTTACATTGACACACC
*
70252921 TCAA-GCCGATGCCATATCCCATACAGGTCTTACACTAGCT-T-ATATATCTTGAGGCCAATGCC
1 TCAAGGCC-ATGCCATATCCCAGACAGGTCTTACACTAGCTCTCATATATC-TG-GGCCAATGCC
* **
70252983 GTGTCCCAGACATGTCTTACA
63 ATGTCCCAGACAAATCTTACA
70253004 CTGGCTCTCA
Statistics
Matches: 69, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
91 6 0.09
92 6 0.09
93 57 0.83
ACGTcount: A:0.26, C:0.30, G:0.17, T:0.28
Consensus pattern (93 bp):
TCAAGGCCATGCCATATCCCAGACAGGTCTTACACTAGCTCTCATATATCTGGGCCAATGCCATG
TCCCAGACAAATCTTACATTGACACACC
Found at i:70252990 original size:49 final size:49
Alignment explanation
Indices: 70252929--70253057 Score: 147
Period size: 49 Copynumber: 2.6 Consensus size: 49
70252919 CCTCAAGCCG
* *
70252929 ATGCCATATCCCATACAGGTCTTACACTAGCT-T-ATATATCTTGAG-GCCA
1 ATGCCATGTCCCAAACAGGTCTTACACTAGCTCTCATATATC--G-GTGCCA
* * * * *
70252978 ATGCCGTGTCCCAGACATGTCTTACACTGGCTCTCATATATCGGTGCCG
1 ATGCCATGTCCCAAACAGGTCTTACACTAGCTCTCATATATCGGTGCCA
70253027 ATGCCATGTCCCAAACAGGTCTTACACTAGC
1 ATGCCATGTCCCAAACAGGTCTTACACTAGC
70253058 ACACACATCA
Statistics
Matches: 67, Mismatches: 10, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
48 1 0.01
49 58 0.87
50 1 0.01
51 7 0.10
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (49 bp):
ATGCCATGTCCCAAACAGGTCTTACACTAGCTCTCATATATCGGTGCCA
Found at i:70257804 original size:46 final size:46
Alignment explanation
Indices: 70257754--70257926 Score: 199
Period size: 46 Copynumber: 3.7 Consensus size: 46
70257744 TGGTTGAGCA
*
70257754 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
70257800 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* *
70257847 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * *
70257893 CCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
70257927 GGGGCGGGTT
Statistics
Matches: 106, Mismatches: 14, Indels: 14
0.79 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 60 0.57
47 29 0.27
48 3 0.03
50 5 0.05
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:70257910 original size:93 final size:93
Alignment explanation
Indices: 70257751--70257921 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
70257741 GGATGGTTGA
* * *
70257751 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCATTGAGT
70257816 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
70257844 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGCCCGAGCTCATTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCATTGAGT
70257909 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
70257922 ACTTAGGGGC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCATTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:70258188 original size:19 final size:20
Alignment explanation
Indices: 70258151--70258188 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
70258141 ATAAGGTGGT
70258151 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
70258171 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
70258189 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:70265629 original size:24 final size:24
Alignment explanation
Indices: 70265549--70265631 Score: 80
Period size: 24 Copynumber: 3.5 Consensus size: 24
70265539 ATTTGTCTCT
*
70265549 CATGAGCTTCCCAAT-TTGGCTCT
1 CATGAGCTTCCCAATATTGGCTCA
* * *
70265572 CATGAGCTTTCCGATTAATGGCTCA
1 CATGAGC-TTCCCAATATTGGCTCA
* *
70265597 C-TAGTGCTTCCCAATATTGGCTCG
1 CAT-GAGCTTCCCAATATTGGCTCA
70265621 CATGAGCTTCC
1 CATGAGCTTCC
70265632 TGATTACGGC
Statistics
Matches: 46, Mismatches: 10, Indels: 7
0.73 0.16 0.11
Matches are distributed among these distances:
23 7 0.15
24 28 0.61
25 11 0.24
ACGTcount: A:0.19, C:0.29, G:0.19, T:0.33
Consensus pattern (24 bp):
CATGAGCTTCCCAATATTGGCTCA
Found at i:70265654 original size:48 final size:48
Alignment explanation
Indices: 70265545--70265655 Score: 129
Period size: 48 Copynumber: 2.3 Consensus size: 48
70265535 CGTTATTTGT
* * *
70265545 CTCTCATGAGCTTCCCAATTTGGCTCTCATGAGCTTTCCGATTAATGG
1 CTCTTATGAGCTTCCCAATTTGGCTCGCATGAGCTTTCCGATTAACGG
* *
70265593 CTCACTA-GTGCTTCCCAATATTGGCTCGCATGAGC-TTCCTGATT-ACGG
1 CTC-TTATGAGCTTCCCAAT-TTGGCTCGCATGAGCTTTCC-GATTAACGG
70265641 CTCTTATGAGCTTCC
1 CTCTTATGAGCTTCC
70265656 TTTTGCATGG
Statistics
Matches: 52, Mismatches: 7, Indels: 8
0.78 0.10 0.12
Matches are distributed among these distances:
47 2 0.04
48 31 0.60
49 19 0.37
ACGTcount: A:0.18, C:0.29, G:0.19, T:0.34
Consensus pattern (48 bp):
CTCTTATGAGCTTCCCAATTTGGCTCGCATGAGCTTTCCGATTAACGG
Found at i:70269508 original size:16 final size:16
Alignment explanation
Indices: 70269487--70269520 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
70269477 AAGGCCCATC
70269487 TACAAAGCATGGCCAA
1 TACAAAGCATGGCCAA
70269503 TACAAAGCATGGCCAA
1 TACAAAGCATGGCCAA
70269519 TA
1 TA
70269521 TAGAATGCAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.44, C:0.24, G:0.18, T:0.15
Consensus pattern (16 bp):
TACAAAGCATGGCCAA
Found at i:70271132 original size:68 final size:64
Alignment explanation
Indices: 70270918--70271134 Score: 215
Period size: 64 Copynumber: 3.3 Consensus size: 64
70270908 GATAATTTTG
* * *
70270918 GCTCTCTTGTACACATGGTGTACACATAGTATCACCCATGTGACCTAGCCACTT-TATCTCGTA
1 GCTCTCTTGTACACATGGTGTATACATAGTATCACCCATGCGACCTAGCTACTTCTATCTCGTA
* ** * * * * * *
70270981 GCTCTCTTATTTACATGGTGTCCTTTACCT-GTAACCACACATGCAACCTAGCTACATCTATCTC
1 GCTCTCTTGTACACATGGTG---TATACATAGT-ATCACCCATGCGACCTAGCTACTTCTATCTC
70271045 GTA
62 GTA
70271048 GCTCTCTTGT-CTACATGGTGTATACATAGTATCACCCATGCGACCTAGCTACTTCATAATGTCT
1 GCTCTCTTGTAC-ACATGGTGTATACATAGTATCACCCATGCGACCTAGCTACTTC-T-A--TCT
70271112 CGTA
61 CGTA
*
70271116 GCTCTTTTGTACACATGGT
1 GCTCTCTTGTACACATGGT
70271135 ATACATCTCG
Statistics
Matches: 121, Mismatches: 21, Indels: 19
0.75 0.13 0.12
Matches are distributed among these distances:
63 17 0.14
64 26 0.21
65 5 0.04
66 23 0.19
67 26 0.21
68 23 0.19
69 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.15, T:0.34
Consensus pattern (64 bp):
GCTCTCTTGTACACATGGTGTATACATAGTATCACCCATGCGACCTAGCTACTTCTATCTCGTA
Found at i:70271167 original size:68 final size:68
Alignment explanation
Indices: 70270918--70271134 Score: 179
Period size: 67 Copynumber: 3.3 Consensus size: 68
70270908 GATAATTTTG
* * * *
70270918 GCTCTCTTGTAC-ACATGGTGTACACATAGTATCACCCATGTGACCTAGCCACTT--T-A--TCT
1 GCTCTCTTGT-CTACATGGTGTATACATAGTATCACACATGCGACCTAGCTACTTCATAATGTCT
70270977 CGTA
65 CGTA
* * * * * * *
70270981 GCTCTCTTATTTACATGGTGTCCTTTACCT-GTAACCACACATGCAACCTAGCTACATC-T-A--
1 GCTCTCTTGTCTACATGGTG---TATACATAGT-ATCACACATGCGACCTAGCTACTTCATAATG
70271041 TCTCGTA
62 TCTCGTA
*
70271048 GCTCTCTTGTCTACATGGTGTATACATAGTATCACCCATGCGACCTAGCTACTTCATAATGTCTC
1 GCTCTCTTGTCTACATGGTGTATACATAGTATCACACATGCGACCTAGCTACTTCATAATGTCTC
70271113 GTA
66 GTA
*
70271116 GCTCTTTTGTAC-ACATGGT
1 GCTCTCTTGT-CTACATGGT
70271135 ATACATCTCG
Statistics
Matches: 122, Mismatches: 20, Indels: 19
0.76 0.12 0.12
Matches are distributed among these distances:
63 17 0.14
64 26 0.21
65 5 0.04
66 23 0.19
67 27 0.22
68 23 0.19
69 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.15, T:0.34
Consensus pattern (68 bp):
GCTCTCTTGTCTACATGGTGTATACATAGTATCACACATGCGACCTAGCTACTTCATAATGTCTC
GTA
Found at i:70273064 original size:26 final size:26
Alignment explanation
Indices: 70272998--70273070 Score: 101
Period size: 26 Copynumber: 2.8 Consensus size: 26
70272988 TATTTTCCCC
*
70272998 AAATTTTATCAAGGTTAAAATTGTCA
1 AAATTTTATCAAGGGTAAAATTGTCA
* *
70273024 AACTTTTACCAAGGGTAAAATTGTCA
1 AAATTTTATCAAGGGTAAAATTGTCA
**
70273050 AAATTTTATTTAGGGTAAAAT
1 AAATTTTATCAAGGGTAAAAT
70273071 AGGGATAGGA
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 40 1.00
ACGTcount: A:0.41, C:0.08, G:0.14, T:0.37
Consensus pattern (26 bp):
AAATTTTATCAAGGGTAAAATTGTCA
Found at i:70274853 original size:29 final size:29
Alignment explanation
Indices: 70274820--70274893 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
70274810 GTTGTGAGAT
* *
70274820 TGGCACTAGGTGTGCGAACTTGAAA-TGCA
1 TGGCACTAAGTGTGCG-ACTTGAAAGTACA
* *
70274849 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGACTTGAAAGTACA
70274878 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
70274894 CAGTTGATTA
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
28 6 0.15
29 34 0.85
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGACTTGAAAGTACA
Found at i:70277593 original size:16 final size:16
Alignment explanation
Indices: 70277572--70277605 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
70277562 ATCTTTGAGC
70277572 TTGTGTTAGACTATGT
1 TTGTGTTAGACTATGT
70277588 TTGTGTTAGACTATGT
1 TTGTGTTAGACTATGT
70277604 TT
1 TT
70277606 TTCAATTGCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.18, C:0.06, G:0.24, T:0.53
Consensus pattern (16 bp):
TTGTGTTAGACTATGT
Found at i:70277685 original size:17 final size:18
Alignment explanation
Indices: 70277663--70277704 Score: 59
Period size: 17 Copynumber: 2.4 Consensus size: 18
70277653 TTTCTAATAA
70277663 TTTTTATAAATTTA-ATT
1 TTTTTATAAATTTATATT
**
70277680 TTTTTATATTTTTATATT
1 TTTTTATAAATTTATATT
70277698 TTTTTAT
1 TTTTTAT
70277705 GATTGGAATT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 12 0.55
18 10 0.45
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (18 bp):
TTTTTATAAATTTATATT
Found at i:70281580 original size:13 final size:13
Alignment explanation
Indices: 70281561--70281626 Score: 63
Period size: 13 Copynumber: 5.5 Consensus size: 13
70281551 TAGATTTTTT
70281561 CTAAATATTATCA
1 CTAAATATTATCA
* *
70281574 TTAAATA--A-CC
1 CTAAATATTATCA
70281584 CTAAATATTATCA
1 CTAAATATTATCA
*
70281597 CTAAATA--AT-T
1 CTAAATATTATCA
70281607 CTAAATATTATCA
1 CTAAATATTATCA
70281620 CTAAATA
1 CTAAATA
70281627 ATTCAAAATT
Statistics
Matches: 41, Mismatches: 6, Indels: 12
0.69 0.10 0.20
Matches are distributed among these distances:
10 14 0.34
11 3 0.07
12 3 0.07
13 21 0.51
ACGTcount: A:0.48, C:0.15, G:0.00, T:0.36
Consensus pattern (13 bp):
CTAAATATTATCA
Found at i:70281628 original size:23 final size:23
Alignment explanation
Indices: 70281559--70281635 Score: 118
Period size: 23 Copynumber: 3.3 Consensus size: 23
70281549 GTTAGATTTT
*
70281559 TTCTAAATATTATCATTAAATAA
1 TTCTAAATATTATCACTAAATAA
**
70281582 CCCTAAATATTATCACTAAATAA
1 TTCTAAATATTATCACTAAATAA
70281605 TTCTAAATATTATCACTAAATAA
1 TTCTAAATATTATCACTAAATAA
*
70281628 TTCAAAAT
1 TTCTAAAT
70281636 TTAAAAATTA
Statistics
Matches: 48, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 48 1.00
ACGTcount: A:0.48, C:0.14, G:0.00, T:0.38
Consensus pattern (23 bp):
TTCTAAATATTATCACTAAATAA
Found at i:70284364 original size:18 final size:18
Alignment explanation
Indices: 70284314--70284364 Score: 75
Period size: 18 Copynumber: 2.8 Consensus size: 18
70284304 AATGGTTTAT
*
70284314 GAGTTGTCAGCTTAGTGG
1 GAGTTGTTAGCTTAGTGG
*
70284332 GAGTTGTTGGCTTAGTGG
1 GAGTTGTTAGCTTAGTGG
*
70284350 GAGTTGTTAGTTTAG
1 GAGTTGTTAGCTTAG
70284365 CCTCCTGTTC
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.16, C:0.06, G:0.39, T:0.39
Consensus pattern (18 bp):
GAGTTGTTAGCTTAGTGG
Found at i:70286369 original size:20 final size:20
Alignment explanation
Indices: 70286332--70286371 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
70286322 TATAGGCAGC
*
70286332 CAAATATATCAATTCATACA
1 CAAATATATCAATCCATACA
70286352 CAAATCATATC-ATCCATACA
1 CAAAT-ATATCAATCCATACA
70286372 TAACCATTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 13 0.72
21 5 0.28
ACGTcount: A:0.47, C:0.25, G:0.00, T:0.28
Consensus pattern (20 bp):
CAAATATATCAATCCATACA
Found at i:70287123 original size:43 final size:42
Alignment explanation
Indices: 70287076--70287158 Score: 96
Period size: 42 Copynumber: 2.0 Consensus size: 42
70287066 TCTTACATGT
*
70287076 AATCAAATATTGATGC-CATTGTCCCAAACAGGGTCTTACACAA
1 AATCAAATA-CGATGCTCA-TGTCCCAAACAGGGTCTTACACAA
* * * *
70287119 AATCATATACGATGCTGATGTCCCAGACATGGTCTTACAC
1 AATCAAATACGATGCTCATGTCCCAAACAGGGTCTTACAC
70287159 GTAAATCTCA
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
42 25 0.74
43 9 0.26
ACGTcount: A:0.34, C:0.24, G:0.16, T:0.27
Consensus pattern (42 bp):
AATCAAATACGATGCTCATGTCCCAAACAGGGTCTTACACAA
Found at i:70289796 original size:23 final size:23
Alignment explanation
Indices: 70289770--70289822 Score: 63
Period size: 23 Copynumber: 2.3 Consensus size: 23
70289760 CTAATATCCT
*
70289770 TAAATAAC-CTTAAATATTATCAC
1 TAAATAACTC-TAAATATCATCAC
* *
70289793 TAAATAATTCTAAATATCATCGC
1 TAAATAACTCTAAATATCATCAC
70289816 TAAATAA
1 TAAATAA
70289823 TTCAAAATTT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
23 25 0.96
24 1 0.04
ACGTcount: A:0.49, C:0.15, G:0.02, T:0.34
Consensus pattern (23 bp):
TAAATAACTCTAAATATCATCAC
Found at i:70289823 original size:23 final size:23
Alignment explanation
Indices: 70289780--70289830 Score: 75
Period size: 23 Copynumber: 2.2 Consensus size: 23
70289770 TAAATAACCT
*
70289780 TAAATATTATCACTAAATAATTC
1 TAAATATCATCACTAAATAATTC
*
70289803 TAAATATCATCGCTAAATAATTC
1 TAAATATCATCACTAAATAATTC
*
70289826 AAAAT
1 TAAAT
70289831 TTAAAAATCA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.49, C:0.14, G:0.02, T:0.35
Consensus pattern (23 bp):
TAAATATCATCACTAAATAATTC
Found at i:70290201 original size:19 final size:22
Alignment explanation
Indices: 70290169--70290208 Score: 59
Period size: 19 Copynumber: 2.0 Consensus size: 22
70290159 TTTTTAATTG
70290169 ATTAATGAATTTTTAA-AAAAT
1 ATTAATGAATTTTTAACAAAAT
70290190 ATTAAT-AA-TTTTAACAAAA
1 ATTAATGAATTTTTAACAAAA
70290209 ACTAATGTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 6 0.33
20 6 0.33
21 6 0.33
ACGTcount: A:0.55, C:0.03, G:0.03, T:0.40
Consensus pattern (22 bp):
ATTAATGAATTTTTAACAAAAT
Found at i:70290208 original size:21 final size:21
Alignment explanation
Indices: 70290169--70290209 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
70290159 TTTTTAATTG
*
70290169 ATTAATGAATTTTTAAAAAAT
1 ATTAATGAATTTTAAAAAAAT
70290190 ATTAAT-AATTTTAACAAAAA
1 ATTAATGAATTTTAA-AAAAA
70290210 CTAATGTTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 7 0.39
21 11 0.61
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.39
Consensus pattern (21 bp):
ATTAATGAATTTTAAAAAAAT
Found at i:70298558 original size:40 final size:41
Alignment explanation
Indices: 70298464--70298684 Score: 219
Period size: 40 Copynumber: 5.6 Consensus size: 41
70298454 TATTCGAATG
* *
70298464 ATATCCGGGCTAAG-TCCCAAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTA-GTGACT
* * * *
70298505 ATAACCGGACTAAGAT-CCGAAGGCATTCGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAG-TGACT
* *
70298545 ATATCCGGGCTAAGA-CCCGAAGGCATTTGTGCTAGCGATT
1 ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAGTGACT
* *
70298585 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAGTGACT
* * * *
70298625 ACATCCGGGCTAAGA-CCCGAAGGC-CTTGTGCAAGT-AGTT
1 ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAGTGA-CT
70298664 ATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGATCCCGAAG
70298685 ATTTCTTGAG
Statistics
Matches: 149, Mismatches: 23, Indels: 19
0.78 0.12 0.10
Matches are distributed among these distances:
37 1 0.01
38 14 0.09
39 14 0.09
40 91 0.61
41 28 0.19
42 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (41 bp):
ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAGTGACT
Found at i:70300435 original size:21 final size:23
Alignment explanation
Indices: 70300382--70300437 Score: 64
Period size: 22 Copynumber: 2.5 Consensus size: 23
70300372 GACACATATG
70300382 CATGGTATATATATAAAAATGTA
1 CATGGTATATATATAAAAATGTA
* *
70300405 TA-AGTA-ATATAATAAAAAT-TA
1 CATGGTATATAT-ATAAAAATGTA
70300426 CATGGTATATAT
1 CATGGTATATAT
70300438 GTGTTAGTAA
Statistics
Matches: 26, Mismatches: 4, Indels: 6
0.72 0.11 0.17
Matches are distributed among these distances:
21 7 0.27
22 14 0.54
23 5 0.19
ACGTcount: A:0.50, C:0.04, G:0.11, T:0.36
Consensus pattern (23 bp):
CATGGTATATATATAAAAATGTA
Found at i:70302445 original size:21 final size:21
Alignment explanation
Indices: 70302419--70302464 Score: 83
Period size: 21 Copynumber: 2.2 Consensus size: 21
70302409 GTTTTGGGGT
*
70302419 TAGGTTTATTTAGGTTTGGGC
1 TAGGTTTATTTAGGTTTAGGC
70302440 TAGGTTTATTTAGGTTTAGGC
1 TAGGTTTATTTAGGTTTAGGC
70302461 TAGG
1 TAGG
70302465 GGCCAAACGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.17, C:0.04, G:0.33, T:0.46
Consensus pattern (21 bp):
TAGGTTTATTTAGGTTTAGGC
Found at i:70304402 original size:13 final size:13
Alignment explanation
Indices: 70304370--70304394 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
70304360 TTGACTTGAT
70304370 CCGTGTGACACGC
1 CCGTGTGACACGC
70304383 CCGTGTGACACG
1 CCGTGTGACACG
70304395 TCTGTGTGTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.36, G:0.32, T:0.16
Consensus pattern (13 bp):
CCGTGTGACACGC
Found at i:70304996 original size:32 final size:32
Alignment explanation
Indices: 70304873--70304999 Score: 148
Period size: 32 Copynumber: 3.9 Consensus size: 32
70304863 TTTCTGAGTG
* * **
70304873 GTACACACAAAGTATACCTTTCCTTTTCATA-T
1 GTACACACAAAGTGTACATAACCTTTTCA-AGT
* * * *
70304905 GGTATACACAAAGTATACCTAACCTTTCCAAGT
1 -GTACACACAAAGTGTACATAACCTTTTCAAGT
70304938 GTACACACAAAGTGTACATAACCTTTTCAAGT
1 GTACACACAAAGTGTACATAACCTTTTCAAGT
*
70304970 GTACACATAAAGTGTACATAACCTTTTCAA
1 GTACACACAAAGTGTACATAACCTTTTCAA
70305000 ATTGTACCAT
Statistics
Matches: 84, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
32 58 0.69
33 26 0.31
ACGTcount: A:0.36, C:0.23, G:0.10, T:0.31
Consensus pattern (32 bp):
GTACACACAAAGTGTACATAACCTTTTCAAGT
Found at i:70305006 original size:65 final size:65
Alignment explanation
Indices: 70304873--70305006 Score: 146
Period size: 65 Copynumber: 2.1 Consensus size: 65
70304863 TTTCTGAGTG
* ** * * *
70304873 GTACACACAAAGTATACCTTTCCTTTTCATATGGTATACACAAAGTATACCTAACCTTTCCAAGT
1 GTACACACAAAGTATACATAACCTTTTCATATGGTACACACAAAGTATACATAACCTTTCAAAGT
* * *
70304938 GTACACACAAAGTGTACATAACCTTTTCA-A-GTGTACACATAAAGTGTACATAACCTTTTCAAA
1 GTACACACAAAGTATACATAACCTTTTCATATG-GTACACACAAAGTATACATAACC-TTTCAAA
*
70305001 TT
64 GT
70305003 GTAC
1 GTAC
70305007 CATTTGGGTA
Statistics
Matches: 57, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
63 1 0.02
64 20 0.35
65 36 0.63
ACGTcount: A:0.36, C:0.22, G:0.10, T:0.31
Consensus pattern (65 bp):
GTACACACAAAGTATACATAACCTTTTCATATGGTACACACAAAGTATACATAACCTTTCAAAGT
Found at i:70311379 original size:32 final size:32
Alignment explanation
Indices: 70311293--70311382 Score: 144
Period size: 32 Copynumber: 2.8 Consensus size: 32
70311283 CATATGGTAT
* * *
70311293 ACACAAAGTATACCTAACCTTTCCAAGTGTAC
1 ACACAAAGTGTACATAACCTTTTCAAGTGTAC
*
70311325 ACACAAATTGTACATAACCTTTTCAAGTGTAC
1 ACACAAAGTGTACATAACCTTTTCAAGTGTAC
70311357 ACACAAAGTGTACATAACCTTTTCAA
1 ACACAAAGTGTACATAACCTTTTCAA
70311383 ATTGTACCAT
Statistics
Matches: 53, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
32 53 1.00
ACGTcount: A:0.39, C:0.24, G:0.09, T:0.28
Consensus pattern (32 bp):
ACACAAAGTGTACATAACCTTTTCAAGTGTAC
Found at i:70313875 original size:31 final size:31
Alignment explanation
Indices: 70313840--70313898 Score: 118
Period size: 31 Copynumber: 1.9 Consensus size: 31
70313830 TACTTTCCAA
70313840 ATTTTAAAATTTAAATTCAATTGTTAATCAG
1 ATTTTAAAATTTAAATTCAATTGTTAATCAG
70313871 ATTTTAAAATTTAAATTCAATTGTTAAT
1 ATTTTAAAATTTAAATTCAATTGTTAAT
70313899 AATGTTAAAC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.42, C:0.05, G:0.05, T:0.47
Consensus pattern (31 bp):
ATTTTAAAATTTAAATTCAATTGTTAATCAG
Found at i:70318250 original size:18 final size:19
Alignment explanation
Indices: 70318227--70318262 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
70318217 TTCACCTTAC
70318227 AAAGCACT-CTCTTTTTCA
1 AAAGCACTCCTCTTTTTCA
*
70318245 AAAGCATTCCTCTTTTTC
1 AAAGCACTCCTCTTTTTC
70318263 CCTTGCATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 7 0.44
19 9 0.56
ACGTcount: A:0.25, C:0.28, G:0.06, T:0.42
Consensus pattern (19 bp):
AAAGCACTCCTCTTTTTCA
Found at i:70319793 original size:46 final size:48
Alignment explanation
Indices: 70319739--70319864 Score: 193
Period size: 46 Copynumber: 2.6 Consensus size: 48
70319729 TGATATGTGT
* *
70319739 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCATTGAGA-CGA-GA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCATTGAGATAGACAA
* *
70319785 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTTGAGATATACAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCATTGAGATAGACAA
70319833 GCTAGTGTAAGACATGTCTGGGACATGGCATC
1 GCTAGTGTAAGACATGTCTGGGACAT-GCATC
70319865 AGCTTGTTGT
Statistics
Matches: 73, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
46 40 0.55
47 1 0.01
48 27 0.37
49 5 0.07
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.24
Consensus pattern (48 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCATTGAGATAGACAA
Found at i:70319951 original size:49 final size:49
Alignment explanation
Indices: 70319879--70320007 Score: 140
Period size: 49 Copynumber: 2.6 Consensus size: 49
70319869 TGTTGTGTGT
* *
70319879 CAGTGTAAGACCTG-TCTGGGACATGGCATC-GACAC-CGATAGATGAGAGC
1 CAGTGTAAGACTTGCT-TGGGACATGGCATCAG-C-CTCGATAGATGAAAGC
* * *
70319928 CAGTGTAAGACTTGCTTAGGACATGGCATCAGCCTCGATATATGAAAGT
1 CAGTGTAAGACTTGCTTGGGACATGGCATCAGCCTCGATAGATGAAAGC
*
70319977 CAGTGTAAGACCTTTC-TGGGACATGGCATCA
1 CAGTGTAAGA-CTTGCTTGGGACATGGCATCA
70320008 ACTTTGATGT
Statistics
Matches: 69, Mismatches: 7, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
48 1 0.01
49 62 0.90
50 6 0.09
ACGTcount: A:0.29, C:0.21, G:0.27, T:0.23
Consensus pattern (49 bp):
CAGTGTAAGACTTGCTTGGGACATGGCATCAGCCTCGATAGATGAAAGC
Found at i:70320004 original size:142 final size:139
Alignment explanation
Indices: 70319733--70320051 Score: 360
Period size: 142 Copynumber: 2.2 Consensus size: 139
70319723 ATTGGGTGAT
* * ** *
70319733 ATGTGTGCTAGTGTAAGACATGTCTGGGACAT-GCATCGGCATTGAGACGAGAGCTAGTGTAAGA
1 ATGTGTGC-AGTGTAAGACCTGTCTGGGACATGGCATCGACACCGAGACGAGAGCCAGTGTAAGA
* * *
70319797 CATGTCTGGGACATGCATCGGCCTTGAGATATACAAGCTAGTGTAAGACATGTCTGGGACATGGC
65 CATGTCTAGGACATGCATCAGCCTCGAGATATACAAGCTAGTGTAAGACATGTCTGGGACATGGC
*
70319862 ATCAGC-TTG
130 ATCAACTTTG
* *
70319871 TTGTGTGTCAGTGTAAGACCTGTCTGGGACATGGCATCGACACCGATAGATGAGAGCCAGTGTAA
1 ATGTGTG-CAGTGTAAGACCTGTCTGGGACATGGCATCGACACCG--AGACGAGAGCCAGTGTAA
* * * *
70319936 GACTTG-CTTAGGACATGGCATCAGCCTCGATATATGA-AAG-TCAGTGTAAGACCTTTCTGGGA
63 GACATGTC-TAGGACAT-GCATCAGCCTCGAGATAT-ACAAGCT-AGTGTAAGACATGTCTGGGA
70319998 CATGGCATCAACTTTG
124 CATGGCATCAACTTTG
70320014 ATGTGTTAGCCAGTGTAAGACCATGTCTGGGACATGGC
1 ATGTG-T-G-CAGTGTAAGACC-TGTCTGGGACATGGC
70320052 GTCGGCATCT
Statistics
Matches: 152, Mismatches: 17, Indels: 16
0.82 0.09 0.09
Matches are distributed among these distances:
138 28 0.18
139 10 0.07
140 1 0.01
141 29 0.19
142 47 0.31
143 8 0.05
144 1 0.01
145 13 0.09
146 15 0.10
ACGTcount: A:0.26, C:0.18, G:0.29, T:0.26
Consensus pattern (139 bp):
ATGTGTGCAGTGTAAGACCTGTCTGGGACATGGCATCGACACCGAGACGAGAGCCAGTGTAAGAC
ATGTCTAGGACATGCATCAGCCTCGAGATATACAAGCTAGTGTAAGACATGTCTGGGACATGGCA
TCAACTTTG
Found at i:70337923 original size:22 final size:22
Alignment explanation
Indices: 70337896--70337970 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
70337886 CATGTGTATG
70337896 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* * *
70337918 TGTGATAAAGG-TGAACATGTG-TATG
1 TGTGAT-AAGGCCG-A-ATG-GCCA-A
70337943 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
70337965 TGTGAT
1 TGTGAT
70337971 GAATGTGAAC
Statistics
Matches: 40, Mismatches: 6, Indels: 14
0.67 0.10 0.23
Matches are distributed among these distances:
22 14 0.35
23 9 0.22
24 9 0.22
25 8 0.20
ACGTcount: A:0.31, C:0.12, G:0.32, T:0.25
Consensus pattern (22 bp):
TGTGATAAGGCCGAATGGCCAA
Found at i:70337967 original size:24 final size:24
Alignment explanation
Indices: 70337893--70337968 Score: 63
Period size: 24 Copynumber: 3.2 Consensus size: 24
70337883 GAACATGTGT
70337893 ATGTGTGATAAGGCCGAATGGCCA
1 ATGTGTGATAAGGCCGAATGGCCA
* *
70337917 A--TGTGATAAAGG-TGAACATGTG--T
1 ATGTGTGAT-AAGGCCG-A-ATG-GCCA
70337940 ATGTGTGATAAGGCCGAATGGCCA
1 ATGTGTGATAAGGCCGAATGGCCA
70337964 ATGTG
1 ATGTG
70337969 ATGAATGTGA
Statistics
Matches: 39, Mismatches: 4, Indels: 18
0.64 0.07 0.30
Matches are distributed among these distances:
22 8 0.21
23 9 0.23
24 14 0.36
25 8 0.21
ACGTcount: A:0.30, C:0.12, G:0.33, T:0.25
Consensus pattern (24 bp):
ATGTGTGATAAGGCCGAATGGCCA
Found at i:70338220 original size:47 final size:47
Alignment explanation
Indices: 70337753--70338204 Score: 726
Period size: 47 Copynumber: 9.6 Consensus size: 47
70337743 AGTATATATA
* * * * *
70337753 TGTGATAGGGCCGAGTGGCCAATGTGATGAATGTGAAAGTATATATATG
1 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTG-AA-CATGTGTATG
*
70337802 CGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTATG
1 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTATG
70337849 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTATG
1 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTATG
* *
70337896 TGTGATAAGGCCGAATGGCCAATGTGATAAAGGTGAACATGTGTATG
1 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTATG
70337943 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTATG
1 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTATG
70337990 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTATG
1 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTATG
70338037 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTATG
1 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTATG
* ** *
70338084 TGTGATAAGGCCGAATGACCAATGTGATGAATGTGAACATGCATATA
1 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTATG
* * *
70338131 TGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-AGTGTATATA
1 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TGTGTATG
*
70338178 TGTGATACGGCCGAATGGCCAATGTGA
1 TGTGATAAGGCCGAATGGCCAATGTGA
70338205 CGGATGTGGA
Statistics
Matches: 382, Mismatches: 20, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
46 1 0.00
47 347 0.91
48 2 0.01
49 32 0.08
ACGTcount: A:0.31, C:0.11, G:0.31, T:0.27
Consensus pattern (47 bp):
TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTATG
Found at i:70342715 original size:17 final size:16
Alignment explanation
Indices: 70342695--70342735 Score: 55
Period size: 17 Copynumber: 2.5 Consensus size: 16
70342685 TTTTCAAAGG
70342695 CCCAAATTAACCCTAAA
1 CCCAAATTAACCCT-AA
**
70342712 CCCAAACAAACCCTAA
1 CCCAAATTAACCCTAA
70342728 CCCAAATT
1 CCCAAATT
70342736 GGTCCAAAAT
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
16 8 0.40
17 12 0.60
ACGTcount: A:0.46, C:0.39, G:0.00, T:0.15
Consensus pattern (16 bp):
CCCAAATTAACCCTAA
Found at i:70343108 original size:39 final size:39
Alignment explanation
Indices: 70343055--70343136 Score: 157
Period size: 39 Copynumber: 2.1 Consensus size: 39
70343045 TGATTGTGGT
70343055 TCTT-ATCTTCTTTATTTTTTGCTTTATTTTTGAGGTTA
1 TCTTAATCTTCTTTATTTTTTGCTTTATTTTTGAGGTTA
70343093 TCTTAATCTTCTTTATTTTTTGCTTTATTTTTGAGGTTA
1 TCTTAATCTTCTTTATTTTTTGCTTTATTTTTGAGGTTA
70343132 TCTTA
1 TCTTA
70343137 CAAAGATAAA
Statistics
Matches: 43, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
38 4 0.09
39 39 0.91
ACGTcount: A:0.15, C:0.11, G:0.10, T:0.65
Consensus pattern (39 bp):
TCTTAATCTTCTTTATTTTTTGCTTTATTTTTGAGGTTA
Found at i:70343160 original size:13 final size:14
Alignment explanation
Indices: 70343138--70343172 Score: 54
Period size: 13 Copynumber: 2.6 Consensus size: 14
70343128 GTTATCTTAC
*
70343138 AAAGATAAAAAA-A
1 AAAGAAAAAAAAGA
70343151 AAAGAAAAAAAAGA
1 AAAGAAAAAAAAGA
70343165 AAAGAAAA
1 AAAGAAAA
70343173 GTTTACTTAC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 11 0.55
14 9 0.45
ACGTcount: A:0.86, C:0.00, G:0.11, T:0.03
Consensus pattern (14 bp):
AAAGAAAAAAAAGA
Found at i:70345728 original size:40 final size:39
Alignment explanation
Indices: 70345659--70345866 Score: 229
Period size: 40 Copynumber: 5.2 Consensus size: 39
70345649 CGGGATTGAG
* * *
70345659 CCGGATATAACTACTTGCAC-AAGGCCTTCGGGTCTTAGC
1 CCGGATATATC-ACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
70345698 CCGGATGTGATCACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATAT-ATCACTAGCACAAATGCCTTCGGGTCTTAGC
70345738 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
70345778 CCGGATATAGCAACTCGCACGAATGCCTTCGGATCTTAGT
1 CCGGATATATC-ACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
70345818 CCGGTTATAGTCACCTAGCACAAAAGCCTTCGGGACTTAGC
1 CCGGATATA-TCA-CTAGCACAAATGCCTTCGGGTCTTAGC
70345859 CCGGATAT
1 CCGGATAT
70345867 CATTCGAATA
Statistics
Matches: 140, Mismatches: 24, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
39 15 0.11
40 96 0.69
41 29 0.21
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (39 bp):
CCGGATATATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:70353918 original size:39 final size:39
Alignment explanation
Indices: 70353866--70354032 Score: 271
Period size: 39 Copynumber: 4.3 Consensus size: 39
70353856 TATGAGATTG
*
70353866 AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTGGA
1 AAAATATCCGGACATGAGGTCCGCAGGCTACATGCTGGA
*
70353905 AAAATATCCGGACATGAGATCCGCAGGCTACATGCTGGA
1 AAAATATCCGGACATGAGGTCCGCAGGCTACATGCTGGA
* *
70353944 AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTAGA
1 AAAATATCCGGACATGAGGTCCGCAGGCTACATGCTGGA
* * *
70353983 AATATATCCGGACTTGAGGTCCGCAGGCTACGTGCTGGA
1 AAAATATCCGGACATGAGGTCCGCAGGCTACATGCTGGA
70354022 AAAATATCCGG
1 AAAATATCCGG
70354033 GTTAAAGACC
Statistics
Matches: 117, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 117 1.00
ACGTcount: A:0.31, C:0.22, G:0.27, T:0.20
Consensus pattern (39 bp):
AAAATATCCGGACATGAGGTCCGCAGGCTACATGCTGGA
Found at i:70354046 original size:78 final size:78
Alignment explanation
Indices: 70353866--70354058 Score: 237
Period size: 78 Copynumber: 2.5 Consensus size: 78
70353856 TATGAGATTG
* ** *
70353866 AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTGGAAAAATATCCGGACATGAGATCCGCAG
1 AAAATATCCGGACATAAGACCCGCAGGCTATATGCTAGAAAAATATCCGGACATGAGATCCGCAG
70353931 GCTACATGCTGGA
66 GCTACATGCTGGA
* ** * * *
70353944 AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTAGAAATATATCCGGACTTGAGGTCCGCAG
1 AAAATATCCGGACATAAGACCCGCAGGCTATATGCTAGAAAAATATCCGGACATGAGATCCGCAG
*
70354009 GCTACGTGCTGGA
66 GCTACATGCTGGA
** *
70354022 AAAATATCCGG-GTTAAAGACCCGCAGGCT-TACGCTAG
1 AAAATATCCGGACAT-AAGACCCGCAGGCTATATGCTAG
70354059 TAATGTATTC
Statistics
Matches: 103, Mismatches: 11, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
77 8 0.08
78 95 0.92
ACGTcount: A:0.31, C:0.22, G:0.27, T:0.20
Consensus pattern (78 bp):
AAAATATCCGGACATAAGACCCGCAGGCTATATGCTAGAAAAATATCCGGACATGAGATCCGCAG
GCTACATGCTGGA
Found at i:70357892 original size:37 final size:37
Alignment explanation
Indices: 70357830--70357975 Score: 220
Period size: 37 Copynumber: 3.9 Consensus size: 37
70357820 AGCTCAGACG
* * * *
70357830 AAATCTCCACACGAAGTTATTGGGTCCTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
70357867 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* *
70357904 TAATCTCCACATGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* *
70357941 TAATCTCCACACGTAGTCATCGGTTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
70357976 ATATATTTCC
Statistics
Matches: 101, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 101 1.00
ACGTcount: A:0.26, C:0.31, G:0.18, T:0.25
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:70358189 original size:47 final size:47
Alignment explanation
Indices: 70358138--70358464 Score: 546
Period size: 47 Copynumber: 7.0 Consensus size: 47
70358128 TTTCACACTA
* * *
70358138 GCCATTCGGCTTTACCACATATATGCATGTTCATATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
* *
70358185 GCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
70358232 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
* **
70358279 GCCATTCGGCCTTATCACACATATGCATACTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
70358326 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
70358373 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
* * **
70358420 GCCATTCGGCCTTATCTCATATATACACATTCACATTCATCACAT
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACAT
70358465 AAAATCCTAA
Statistics
Matches: 263, Mismatches: 17, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 263 1.00
ACGTcount: A:0.26, C:0.29, G:0.12, T:0.33
Consensus pattern (47 bp):
GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
Found at i:70366299 original size:39 final size:39
Alignment explanation
Indices: 70366245--70366411 Score: 235
Period size: 39 Copynumber: 4.3 Consensus size: 39
70366235 TATGAGATTG
* * *
70366245 AAAATATCCGAACATGAGGTCCGTAGGCTATATGCTGGA
1 AAAATATCCGGACATGAGATCCGCAGGCTATATGCTGGA
*
70366284 AAAATATCCAGACATGAGATCCGCAGGCTATATGCTGGA
1 AAAATATCCGGACATGAGATCCGCAGGCTATATGCTGGA
* *
70366323 AAAATATCCGGACATGAGATCCGTAGGCTATATGCTAGA
1 AAAATATCCGGACATGAGATCCGCAGGCTATATGCTGGA
* * * **
70366362 AATATATCCGGACTTGAGGTCCGCAGGCTACGTGCTGGA
1 AAAATATCCGGACATGAGATCCGCAGGCTATATGCTGGA
70366401 AAAATATCCGG
1 AAAATATCCGG
70366412 GTTAAAGACC
Statistics
Matches: 113, Mismatches: 15, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
39 113 1.00
ACGTcount: A:0.33, C:0.20, G:0.25, T:0.22
Consensus pattern (39 bp):
AAAATATCCGGACATGAGATCCGCAGGCTATATGCTGGA
Found at i:70366429 original size:78 final size:78
Alignment explanation
Indices: 70366245--70366437 Score: 201
Period size: 78 Copynumber: 2.5 Consensus size: 78
70366235 TATGAGATTG
* * ** * *
70366245 AAAATATCCGAACATGAGGTCCGTAGGCTATATGCTGGAAAAATATCCAGACATGAGATCCGCAG
1 AAAATATCCGGACATAAGACCCGCAGGCTATATGCTAGAAAAATATCCAGACATGAGATCCGCAG
*
70366310 GCTATATGCTGGA
66 GCTACATGCTGGA
* * * * * * *
70366323 AAAATATCCGGACATGAGATCCGTAGGCTATATGCTAGAAATATATCCGGACTTGAGGTCCGCAG
1 AAAATATCCGGACATAAGACCCGCAGGCTATATGCTAGAAAAATATCCAGACATGAGATCCGCAG
*
70366388 GCTACGTGCTGGA
66 GCTACATGCTGGA
** *
70366401 AAAATATCCGG-GTTAAAGACCCGCAGGCT-TACGCTAG
1 AAAATATCCGGACAT-AAGACCCGCAGGCTATATGCTAG
70366438 TAATGTATTC
Statistics
Matches: 99, Mismatches: 15, Indels: 3
0.85 0.13 0.03
Matches are distributed among these distances:
77 8 0.08
78 91 0.92
ACGTcount: A:0.32, C:0.21, G:0.25, T:0.22
Consensus pattern (78 bp):
AAAATATCCGGACATAAGACCCGCAGGCTATATGCTAGAAAAATATCCAGACATGAGATCCGCAG
GCTACATGCTGGA
Found at i:70367399 original size:27 final size:28
Alignment explanation
Indices: 70367362--70367460 Score: 112
Period size: 27 Copynumber: 3.5 Consensus size: 28
70367352 TTGAATTTAC
70367362 ACTTAGTGAAATGTCTAATGTTGAAAAA
1 ACTTAGTGAAATGTCTAATGTTGAAAAA
* * * *
70367390 ACTTA-TGAAATGATCCAAAAGTTGAATTTAC
1 ACTTAGTGAAATG-T-CTAATGTTGAA--AAA
70367421 ACTTAGTGAAATGTCTAATGTTGAAAAA
1 ACTTAGTGAAATGTCTAATGTTGAAAAA
70367449 ACTTA-TGAAATG
1 ACTTAGTGAAATG
70367461 ATCCAAAAGT
Statistics
Matches: 58, Mismatches: 8, Indels: 11
0.75 0.10 0.14
Matches are distributed among these distances:
27 14 0.24
28 12 0.21
29 9 0.16
30 9 0.16
31 7 0.12
32 7 0.12
ACGTcount: A:0.42, C:0.09, G:0.16, T:0.32
Consensus pattern (28 bp):
ACTTAGTGAAATGTCTAATGTTGAAAAA
Found at i:70367444 original size:59 final size:59
Alignment explanation
Indices: 70367352--70367474 Score: 246
Period size: 59 Copynumber: 2.1 Consensus size: 59
70367342 TTGAAATATC
70367352 TTGAATTTACACTTAGTGAAATGTCTAATGTTGAAAAAACTTATGAAATGATCCAAAAG
1 TTGAATTTACACTTAGTGAAATGTCTAATGTTGAAAAAACTTATGAAATGATCCAAAAG
70367411 TTGAATTTACACTTAGTGAAATGTCTAATGTTGAAAAAACTTATGAAATGATCCAAAAG
1 TTGAATTTACACTTAGTGAAATGTCTAATGTTGAAAAAACTTATGAAATGATCCAAAAG
70367470 TTGAA
1 TTGAA
70367475 GGAAGCTTTG
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
59 64 1.00
ACGTcount: A:0.42, C:0.10, G:0.15, T:0.33
Consensus pattern (59 bp):
TTGAATTTACACTTAGTGAAATGTCTAATGTTGAAAAAACTTATGAAATGATCCAAAAG
Found at i:70367474 original size:29 final size:29
Alignment explanation
Indices: 70367381--70367474 Score: 111
Period size: 29 Copynumber: 3.2 Consensus size: 29
70367371 AATGTCTAAT
70367381 GTTGAAAAAACTTATGAAATGATCCAAAA
1 GTTGAAAAAACTTATGAAATGATCCAAAA
* * * *
70367410 GTTGAATTTACACTTAGTGAAATG-T-CTAAT
1 GTTGAA--AAAACTTA-TGAAATGATCCAAAA
70367440 GTTGAAAAAACTTATGAAATGATCCAAAA
1 GTTGAAAAAACTTATGAAATGATCCAAAA
70367469 GTTGAA
1 GTTGAA
70367475 GGAAGCTTTG
Statistics
Matches: 52, Mismatches: 8, Indels: 10
0.74 0.11 0.14
Matches are distributed among these distances:
27 7 0.13
28 7 0.13
29 15 0.29
30 9 0.17
31 7 0.13
32 7 0.13
ACGTcount: A:0.45, C:0.10, G:0.16, T:0.30
Consensus pattern (29 bp):
GTTGAAAAAACTTATGAAATGATCCAAAA
Found at i:70372854 original size:40 final size:40
Alignment explanation
Indices: 70372809--70372993 Score: 228
Period size: 40 Copynumber: 4.6 Consensus size: 40
70372799 CTTGCACAAG
* * *
70372809 GCCTTCGGGTCTTAGCCCGGATGTGGTCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * *
70372849 GCCTTCGGGACTTAGCCCGGATATAATCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
70372889 GCCTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAAT
* * * *
70372929 GCCTTCGGATCTTAGTCCGGTTATAGTCACCTAGCACAAAA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCA-CTAGCACAAAT
*
70372970 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
70372994 CATTCAAATA
Statistics
Matches: 121, Mismatches: 21, Indels: 5
0.82 0.14 0.03
Matches are distributed among these distances:
39 1 0.01
40 91 0.75
41 29 0.24
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.25
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:70379687 original size:63 final size:63
Alignment explanation
Indices: 70379588--70379712 Score: 232
Period size: 63 Copynumber: 2.0 Consensus size: 63
70379578 ACCGTGACTC
70379588 TGATACCAATAAAATTGTAACACCCCGTACCCGAGACCGTTGTCGGAGTCGAACACGAGGTGA
1 TGATACCAATAAAATTGTAACACCCCGTACCCGAGACCGTTGTCGGAGTCGAACACGAGGTGA
* *
70379651 TGATACCAATAAAATTGTAACACCCCGTACCCGAGACCGTTTTCGGAGTCGAGCACGAGGTG
1 TGATACCAATAAAATTGTAACACCCCGTACCCGAGACCGTTGTCGGAGTCGAACACGAGGTG
70379713 CTAACCGACT
Statistics
Matches: 60, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
63 60 1.00
ACGTcount: A:0.30, C:0.26, G:0.24, T:0.20
Consensus pattern (63 bp):
TGATACCAATAAAATTGTAACACCCCGTACCCGAGACCGTTGTCGGAGTCGAACACGAGGTGA
Found at i:70381088 original size:40 final size:40
Alignment explanation
Indices: 70381044--70381228 Score: 210
Period size: 40 Copynumber: 4.6 Consensus size: 40
70381034 CTTGCACAAG
* * *
70381044 GCCTTCGGGTCTTAGCCCGGATGTGGTCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * *
70381084 GCCTTCGGGACTTAGCCCGGATATAATCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* **
70381124 GCCTTCGGGTCTTAGCCCGGATATAG-CAACTCGCATGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAAT
* * * * *
70381164 GCCTTCGGATCTTAGTCCGGTTATAGTCACCTATCACAAAA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCA-CTAGCACAAAT
*
70381205 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
70381229 CATTCGAATA
Statistics
Matches: 118, Mismatches: 24, Indels: 5
0.80 0.16 0.03
Matches are distributed among these distances:
39 1 0.01
40 90 0.76
41 27 0.23
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:70381165 original size:80 final size:81
Alignment explanation
Indices: 70381044--70381228 Score: 232
Period size: 80 Copynumber: 2.3 Consensus size: 81
70381034 CTTGCACAAG
* *
70381044 GCCTTCGGGTCTTAGCCCGGATGTGGTCACTAGCATAAATGCCTTCGGGA-CTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCATAAATGCCTTC-GGATCTTAGCCCGGATAT
* *
70381108 AATC-GCTAGCACAAAT
65 AATCACCTAGCACAAAA
* * * *
70381124 GCCTTCGGGTCTTAGCCCGGATATAG-CAACTCGCATGAATGCCTTCGGATCTTAGTCCGGTTAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCATAAATGCCTTCGGATCTTAGCCCGGATAT
* *
70381188 AGTCACCTATCACAAAA
65 AATCACCTAGCACAAAA
*
70381205 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
70381229 CATTCGAATA
Statistics
Matches: 91, Mismatches: 11, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
79 4 0.04
80 55 0.60
81 32 0.35
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (81 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCATAAATGCCTTCGGATCTTAGCCCGGATATA
ATCACCTAGCACAAAA
Found at i:70393813 original size:21 final size:20
Alignment explanation
Indices: 70393787--70393826 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
70393777 TGCATGGCTC
*
70393787 ACACGCTCGTATGGTCTAGGG
1 ACACGCCCGTATGGT-TAGGG
*
70393808 ACACGCCCGTGTGGTTAGG
1 ACACGCCCGTATGGTTAGG
70393827 CCGTGTACTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.17, C:0.25, G:0.35, T:0.23
Consensus pattern (20 bp):
ACACGCCCGTATGGTTAGGG
Found at i:70402115 original size:12 final size:13
Alignment explanation
Indices: 70402079--70402116 Score: 51
Period size: 14 Copynumber: 2.9 Consensus size: 13
70402069 AAATATTTGG
70402079 CTTGTTCTTAATT
1 CTTGTTCTTAATT
*
70402092 ATGTGTTCTTAATT
1 CT-TGTTCTTAATT
70402106 CTTG-TCTTAAT
1 CTTGTTCTTAAT
70402117 ATTCCAGGAT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
12 7 0.32
13 3 0.14
14 12 0.55
ACGTcount: A:0.18, C:0.13, G:0.11, T:0.58
Consensus pattern (13 bp):
CTTGTTCTTAATT
Found at i:70404355 original size:48 final size:49
Alignment explanation
Indices: 70404276--70404423 Score: 129
Period size: 48 Copynumber: 3.0 Consensus size: 49
70404266 GCTAGCTCTG
* * * * * *
70404276 AAGAGCCATTAACGGGAAGCTTCGGATAGCCATATATCGGGAAGTTCA-A
1 AAGAGCCA-TATCGGGAAGCTCCGAAGAGCCATATATCGAGAAGCTCACA
** *
70404325 GCGAGCCATATCGGGAAGCTCCGAAGAGCCAT-TAATCAAGAAGCTCACA
1 AAGAGCCATATCGGGAAGCTCCGAAGAGCCATAT-ATCGAGAAGCTCACA
* * *
70404374 AAGAGCCTTTAATCGGGAAGCTCACGAAGAGCCTTATATCGAGATGCTCA
1 AAGAGCC-AT-ATCGGGAAGCTC-CGAAGAGCCATATATCGAGAAGCTCA
70404424 TAAAAGCTGC
Statistics
Matches: 78, Mismatches: 15, Indels: 9
0.76 0.15 0.09
Matches are distributed among these distances:
47 1 0.01
48 30 0.38
49 12 0.15
50 1 0.01
51 12 0.15
52 21 0.27
53 1 0.01
ACGTcount: A:0.34, C:0.22, G:0.25, T:0.19
Consensus pattern (49 bp):
AAGAGCCATATCGGGAAGCTCCGAAGAGCCATATATCGAGAAGCTCACA
Found at i:70404393 original size:26 final size:26
Alignment explanation
Indices: 70404334--70404408 Score: 107
Period size: 26 Copynumber: 2.9 Consensus size: 26
70404324 AGCGAGCCAT
*
70404334 ATCGGGAAGCTC-CGAAGAGCCATTA
1 ATCGGGAAGCTCACGAAGAGCCTTTA
** *
70404359 ATCAAGAAGCTCACAAAGAGCCTTTA
1 ATCGGGAAGCTCACGAAGAGCCTTTA
70404385 ATCGGGAAGCTCACGAAGAGCCTT
1 ATCGGGAAGCTCACGAAGAGCCTT
70404409 ATATCGAGAT
Statistics
Matches: 42, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
25 10 0.24
26 32 0.76
ACGTcount: A:0.35, C:0.24, G:0.24, T:0.17
Consensus pattern (26 bp):
ATCGGGAAGCTCACGAAGAGCCTTTA
Found at i:70404414 original size:26 final size:26
Alignment explanation
Indices: 70404303--70404423 Score: 101
Period size: 26 Copynumber: 4.8 Consensus size: 26
70404293 AGCTTCGGAT
* * * *
70404303 AGCCATATATCGGGAAGTTCAAG-CG
1 AGCCTTATATCGGGAAGCTCACGAAG
70404328 AGCC--ATATCGGGAAGCTC-CGAAG
1 AGCCTTATATCGGGAAGCTCACGAAG
** *
70404351 AGCCATTA-ATCAAGAAGCTCACAAAG
1 AGCC-TTATATCGGGAAGCTCACGAAG
70404377 AGCCTT-TAATCGGGAAGCTCACGAAG
1 AGCCTTAT-ATCGGGAAGCTCACGAAG
* *
70404403 AGCCTTATATCGAGATGCTCA
1 AGCCTTATATCGGGAAGCTCA
70404424 TAAAAGCTGC
Statistics
Matches: 77, Mismatches: 11, Indels: 15
0.75 0.11 0.15
Matches are distributed among these distances:
22 1 0.01
23 18 0.23
25 16 0.21
26 41 0.53
27 1 0.01
ACGTcount: A:0.34, C:0.23, G:0.24, T:0.19
Consensus pattern (26 bp):
AGCCTTATATCGGGAAGCTCACGAAG
Found at i:70407453 original size:25 final size:24
Alignment explanation
Indices: 70407419--70407465 Score: 67
Period size: 25 Copynumber: 1.9 Consensus size: 24
70407409 TAAAGAAATG
*
70407419 GAAAAAAAAAGAGAAAGAAAATGAT
1 GAAAAAAAAAGA-AAAAAAAATGAT
*
70407444 GAAAACAAAAGAAAAAAAAATG
1 GAAAAAAAAAGAAAAAAAAATG
70407466 TGTCCATCCT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 9 0.45
25 11 0.55
ACGTcount: A:0.74, C:0.02, G:0.17, T:0.06
Consensus pattern (24 bp):
GAAAAAAAAAGAAAAAAAAATGAT
Found at i:70408789 original size:40 final size:39
Alignment explanation
Indices: 70408705--70408889 Score: 212
Period size: 40 Copynumber: 4.6 Consensus size: 39
70408695 TCGAATGATG
* * * *
70408705 TCCGGGCTAAGTCCTGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCC-GAAGGCATTTGTGC-GAGTTACTAAA
* *
70408745 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
* *
70408785 TCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
*
70408824 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AA
*
70408865 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
70408890 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 15, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
39 35 0.28
40 79 0.63
41 12 0.10
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:70408911 original size:79 final size:79
Alignment explanation
Indices: 70408758--70408922 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
70408748 GGACTAAGAT
* **
70408758 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
70408823 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
70408837 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
70408900 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
70408916 CCGAAGG
1 CCGAAGG
70408923 TACGTGATTC
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 49 0.65
80 24 0.32
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:70416846 original size:79 final size:81
Alignment explanation
Indices: 70416710--70416892 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
70416700 TCGAATGATG
* *
70416710 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
70416774 TGTGCGAGTTACTA-A
66 TGTGCGAGTTACTATA
* * * **
70416789 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
70416851 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGTTACTATA
* *
70416869 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
70416893 TGAACGAGTA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 59 0.66
80 30 0.33
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGTTACTATA
Found at i:70416908 original size:40 final size:40
Alignment explanation
Indices: 70416711--70416894 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
70416701 CGAATGATGT
* * * *
70416711 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* *
70416751 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
*
70416791 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
70416829 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
70416870 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
70416895 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:70416916 original size:79 final size:79
Alignment explanation
Indices: 70416763--70416927 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
70416753 GGACTAAGAT
* **
70416763 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
70416828 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
70416842 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
70416905 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
70416921 CCGAAGG
1 CCGAAGG
70416928 TACGTGATTC
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 49 0.65
80 24 0.32
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:70419649 original size:36 final size:36
Alignment explanation
Indices: 70419607--70419678 Score: 144
Period size: 36 Copynumber: 2.0 Consensus size: 36
70419597 TAAAAATGTT
70419607 AATAAGACAATTATGAACTTAAAATAAATAAAAATA
1 AATAAGACAATTATGAACTTAAAATAAATAAAAATA
70419643 AATAAGACAATTATGAACTTAAAATAAATAAAAATA
1 AATAAGACAATTATGAACTTAAAATAAATAAAAATA
70419679 TTTTTTCATC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.64, C:0.06, G:0.06, T:0.25
Consensus pattern (36 bp):
AATAAGACAATTATGAACTTAAAATAAATAAAAATA
Found at i:70428616 original size:18 final size:19
Alignment explanation
Indices: 70428579--70428618 Score: 64
Period size: 18 Copynumber: 2.2 Consensus size: 19
70428569 TGATGAAAAA
*
70428579 AAATTCAAAATAATATCAT
1 AAATTCAAAATAAAATCAT
70428598 AAATTCAAAA-AAAATCAT
1 AAATTCAAAATAAAATCAT
70428616 AAA
1 AAA
70428619 ATCCAAAAAG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 10 0.50
19 10 0.50
ACGTcount: A:0.65, C:0.10, G:0.00, T:0.25
Consensus pattern (19 bp):
AAATTCAAAATAAAATCAT
Found at i:70428620 original size:19 final size:19
Alignment explanation
Indices: 70428578--70428627 Score: 66
Period size: 19 Copynumber: 2.6 Consensus size: 19
70428568 GTGATGAAAA
*
70428578 AAAATTCAAAATAATATCAT
1 AAAATTCAAAA-AAAATCAT
70428598 -AAATTCAAAAAAAATCAT
1 AAAATTCAAAAAAAATCAT
*
70428616 AAAATCCAAAAA
1 AAAATTCAAAAA
70428628 GACAAAAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
18 7 0.26
19 20 0.74
ACGTcount: A:0.66, C:0.12, G:0.00, T:0.22
Consensus pattern (19 bp):
AAAATTCAAAAAAAATCAT
Found at i:70437338 original size:20 final size:20
Alignment explanation
Indices: 70437313--70437371 Score: 75
Period size: 20 Copynumber: 2.8 Consensus size: 20
70437303 TCATGATTAC
70437313 TATATATTAGTGTATAT-TTT
1 TATATATTA-TGTATATGTTT
70437333 TATATATATATGTATATGTTT
1 TATATAT-TATGTATATGTTT
70437354 TAATATATTTATGTATAT
1 T-ATATA-TTATGTATAT
70437372 ACTTATGTAG
Statistics
Matches: 35, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
20 14 0.40
21 6 0.17
22 14 0.40
23 1 0.03
ACGTcount: A:0.34, C:0.00, G:0.08, T:0.58
Consensus pattern (20 bp):
TATATATTATGTATATGTTT
Found at i:70437338 original size:22 final size:22
Alignment explanation
Indices: 70437313--70437371 Score: 79
Period size: 22 Copynumber: 2.7 Consensus size: 22
70437303 TCATGATTAC
70437313 TATATATTAGTGTATAT-TTTTA
1 TATATATTA-TGTATATGTTTTA
70437335 TATATA-TATGTATATGTTTTA
1 TATATATTATGTATATGTTTTA
70437356 -ATATATTTATGTATAT
1 TATATA-TTATGTATAT
70437372 ACTTATGTAG
Statistics
Matches: 34, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
20 12 0.35
21 7 0.21
22 15 0.44
ACGTcount: A:0.34, C:0.00, G:0.08, T:0.58
Consensus pattern (22 bp):
TATATATTATGTATATGTTTTA
Found at i:70437464 original size:30 final size:30
Alignment explanation
Indices: 70437409--70437483 Score: 82
Period size: 30 Copynumber: 2.5 Consensus size: 30
70437399 TTTATCCCTA
*
70437409 ATAT-TTATGTATTATGTAAATA-TTTTAAT
1 ATATATTATGTA-TATCTAAATATTTTTAAT
* **
70437438 ATTATATTATGTATATCTATATATTTTTCGT
1 A-TATATTATGTATATCTAAATATTTTTAAT
70437469 ATATATTATGTATAT
1 ATATATTATGTATAT
70437484 GTGTTTTCAA
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
29 1 0.03
30 25 0.64
31 13 0.33
ACGTcount: A:0.35, C:0.03, G:0.07, T:0.56
Consensus pattern (30 bp):
ATATATTATGTATATCTAAATATTTTTAAT
Found at i:70437591 original size:19 final size:19
Alignment explanation
Indices: 70437567--70437603 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
70437557 CTATTTTATA
*
70437567 TATATTTCTAATATCATTG
1 TATATTTCTAACATCATTG
70437586 TATATTTCTAACATCATT
1 TATATTTCTAACATCATT
70437604 ATTATTATAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.32, C:0.14, G:0.03, T:0.51
Consensus pattern (19 bp):
TATATTTCTAACATCATTG
Found at i:70437692 original size:9 final size:9
Alignment explanation
Indices: 70437674--70437710 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
70437664 TCATTTCTAA
70437674 TATATATAT
1 TATATATAT
*
70437683 TATATGTAT
1 TATATATAT
*
70437692 TTTATATAT
1 TATATATAT
70437701 TATATATAT
1 TATATATAT
70437710 T
1 T
70437711 TTAATGTTAT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (9 bp):
TATATATAT
Found at i:70437699 original size:18 final size:18
Alignment explanation
Indices: 70437676--70437713 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
70437666 ATTTCTAATA
*
70437676 TATATATTATATGTATTT
1 TATATATTATATATATTT
70437694 TATATATTATATATATTT
1 TATATATTATATATATTT
70437712 TA
1 TA
70437714 ATGTTATTAG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.37, C:0.00, G:0.03, T:0.61
Consensus pattern (18 bp):
TATATATTATATATATTT
Found at i:70438133 original size:25 final size:24
Alignment explanation
Indices: 70438105--70438160 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 24
70438095 GTTATATTTT
*
70438105 CACTATTTTAT-GTATATACTTCAAA
1 CACTATTATATAGTATAT--TTCAAA
*
70438130 CACTA-TATATAGTATATTTCTAA
1 CACTATTATATAGTATATTTCAAA
70438153 CACTATTA
1 CACTATTA
70438161 CTATTTATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
23 10 0.37
24 6 0.22
25 11 0.41
ACGTcount: A:0.38, C:0.16, G:0.04, T:0.43
Consensus pattern (24 bp):
CACTATTATATAGTATATTTCAAA
Found at i:70449034 original size:11 final size:11
Alignment explanation
Indices: 70449018--70449043 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
70449008 TATTATGCCT
70449018 AAAAAAAAGAA
1 AAAAAAAAGAA
70449029 AAAAAAAAGAA
1 AAAAAAAAGAA
70449040 AAAA
1 AAAA
70449044 GGGGATCAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.92, C:0.00, G:0.08, T:0.00
Consensus pattern (11 bp):
AAAAAAAAGAA
Found at i:70449984 original size:74 final size:75
Alignment explanation
Indices: 70449901--70450133 Score: 301
Period size: 74 Copynumber: 3.1 Consensus size: 75
70449891 TTTATTTCTG
* *
70449901 TTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTT
1 TTTC-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAGGACACGTTGAGGTATTTT
*
70449966 CAATCT-ATTT
65 CAATCTCAGTT
* *
70449976 TTTCAAAAAAATCAACTCATATTGCGAGAGGTAAGTTGAACCTCAGGACACGCTGAGGTAGTTTT
1 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAGGACACGTTGAGGTA-TTTT
*
70450041 -AATTTCAGTT
65 CAATCTCAGTT
** *
70450051 CATCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAGGTTACATGTTGAGGTATTT
1 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAGG--ACACGTTGAGGTATTT
* *
70450116 ACAATTTCCA-TT
64 TCAATCT-CAGTT
70450128 TTTCAA
1 TTTCAA
70450134 TTTATGTTTT
Statistics
Matches: 138, Mismatches: 14, Indels: 10
0.85 0.09 0.06
Matches are distributed among these distances:
74 56 0.41
75 55 0.40
76 3 0.02
77 22 0.16
78 2 0.01
ACGTcount: A:0.33, C:0.16, G:0.18, T:0.32
Consensus pattern (75 bp):
TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAGGACACGTTGAGGTATTTTC
AATCTCAGTT
Found at i:70450221 original size:90 final size:90
Alignment explanation
Indices: 70450056--70450275 Score: 273
Period size: 90 Copynumber: 2.4 Consensus size: 90
70450046 CAGTTCATCA
* * * **
70450056 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAGGTTACATGTTGAGGTATTTACAAT
1 AAAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGTCACATGCCGAGGTATTTACAAT
** *
70450121 TTCCATTTTTCAATTTATGTTTTTC
66 TAACATTTTTCAATTTATGCTTTTC
* * * *
70450146 -AAAAATAAATTCATATTGCTAGAGGTGAATTGAGCCTCAGGATCACATGCCGAGGTATTTTCAA
1 AAAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGG-TCACATGCCGAGGTATTTACAA
**
70450210 TTAATGTTTTTCAATTTATGCTTTTC
65 TTAACATTTTTCAATTTATGCTTTTC
70450236 AAAAAAATCAACTCATATTG-TGAGAGGTGAGTTGAGCCTC
1 -AAAAAATCAACTCATATTGCT-AGAGGTGAGTTGAGCCTC
70450276 GGAACACGCT
Statistics
Matches: 109, Mismatches: 17, Indels: 6
0.83 0.13 0.05
Matches are distributed among these distances:
89 36 0.33
90 39 0.36
91 1 0.01
92 33 0.30
ACGTcount: A:0.32, C:0.15, G:0.18, T:0.36
Consensus pattern (90 bp):
AAAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGTCACATGCCGAGGTATTTACAAT
TAACATTTTTCAATTTATGCTTTTC
Found at i:70450222 original size:14 final size:14
Alignment explanation
Indices: 70450203--70450237 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
70450193 TGCCGAGGTA
*
70450203 TTTTCAATTAATGT
1 TTTTCAATTAATGC
*
70450217 TTTTCAATTTATGC
1 TTTTCAATTAATGC
70450231 TTTTCAA
1 TTTTCAA
70450238 AAAAATCAAC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.26, C:0.11, G:0.06, T:0.57
Consensus pattern (14 bp):
TTTTCAATTAATGC
Found at i:70450354 original size:71 final size:71
Alignment explanation
Indices: 70450238--70450377 Score: 185
Period size: 71 Copynumber: 2.0 Consensus size: 71
70450228 TGCTTTTCAA
* ** *
70450238 AAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCGGAACACGCTGAGGTATTGTT-AATTT
1 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGAACACGCTGAGGTATT-TTCAATTT
*
70450302 TTGTTTC
65 CTGTTTC
* *
70450309 AAAACTCAACTCATATTGCGAGAAATGAGTTGAGCCTCA-AGACACGTTGAGGTATTTTCAATTT
1 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGA-ACACGCTGAGGTATTTTCAATTT
70450373 CTGTT
65 CTGTT
70450378 CAATTTATGT
Statistics
Matches: 60, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
70 3 0.05
71 57 0.95
ACGTcount: A:0.30, C:0.16, G:0.21, T:0.33
Consensus pattern (71 bp):
AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGAACACGCTGAGGTATTTTCAATTTC
TGTTTC
Found at i:70450517 original size:336 final size:326
Alignment explanation
Indices: 70449901--70450606 Score: 813
Period size: 336 Copynumber: 2.1 Consensus size: 326
70449891 TTTATTTCTG
*
70449901 TTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTT
1 TTTC-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTT
** *
70449966 CAATCTATTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTAAGTTGAACCTCAGGACACGCTG
65 CAATCTATTTTTTC-AAAAAATCAACTCATATTGCGAGAAATAAGTTGAACCTCAAGACACGCTG
*
70450031 AGGTAGTTTTAATTTCAGTTCATCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCA
129 AGGTAGTTTTAATTTCAGTTCATCAAAAAAATCAACTCATATTGAGAGAGGTGAGTTGAACCTCA
* * * * * * *
70450096 GGTTACATGTTGAGGTATTTACAATTTCCATTTTTCAATTTATGTTTTTCAAAAATAAATTCATA
194 GGTGACACGCTGAGATATTTACAATTTCCATTTTTAAATTTATGCTTTTCAAAAATAAACTCATA
* * * *
70450161 TTGCTAGAGGTGAATTGAGCCTCAGGATCACATGCCGAGGTATTTTCAATTAA-TGTTTTTCAAT
259 TTACGAGAGGTGAATTGAGCCTCAGG-TCACATGCCGAGGTATTTTCAA--AACTGTTTTGCAAA
70450225 TTATGCT
321 TTATG-T
* *
70450232 TTTCAAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTC-GGAACACGCTGAGGTATTGT
1 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAG-ACACGCTGAGGTATT-T
* * * *
70450296 T-AAT-T-TTTGTTTC-AAAACTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTT
64 TCAATCTATTT-TTTCAAAAAATCAACTCATATTGCGAGAAATAAGTTGAACCTCAAGACACGCT
* * *
70450357 GAGGTA-TTTTCAATTTCTGTTCAATTTATGTTTTTCAAAAATCAACTCATATTGAGAGAGGTGA
128 GAGGTAGTTTT-AATTTCAGTTC-A-TCA-------AAAAAATCAACTCATATTGAGAGAGGTGA
* * * ***
70450421 GTTGAGCCTC-GG-GGCACGCTGAGATATTTTCAATTAATGTTTTTTTAAATTTATGCTTTTCAA
183 GTTGAACCTCAGGTGACACGCTGAGATATTTACAATT--TCCATTTTTAAATTTATGCTTTTCAA
* * *
70450484 AAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAGGTTACATGCCGAGGTATTTTCAAAATC
246 AAATAAACTCATATTACGAGAGGTGAATTGAGCCTCAGGTCACATGCCGAGGTATTTTCAAAA-C
*
70450549 TGTTTTGCAAATTCTGT
310 TGTTTTGCAAATTATGT
*
70450566 TTTC--AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCT
1 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
70450607 TTGCTCACGT
Statistics
Matches: 321, Mismatches: 37, Indels: 33
0.82 0.09 0.08
Matches are distributed among these distances:
326 4 0.01
327 57 0.18
328 4 0.01
329 8 0.02
330 56 0.17
331 6 0.02
332 35 0.11
333 2 0.01
334 22 0.07
335 36 0.11
336 91 0.28
ACGTcount: A:0.31, C:0.15, G:0.19, T:0.35
Consensus pattern (326 bp):
TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTC
AATCTATTTTTTCAAAAAATCAACTCATATTGCGAGAAATAAGTTGAACCTCAAGACACGCTGAG
GTAGTTTTAATTTCAGTTCATCAAAAAAATCAACTCATATTGAGAGAGGTGAGTTGAACCTCAGG
TGACACGCTGAGATATTTACAATTTCCATTTTTAAATTTATGCTTTTCAAAAATAAACTCATATT
ACGAGAGGTGAATTGAGCCTCAGGTCACATGCCGAGGTATTTTCAAAACTGTTTTGCAAATTATG
T
Found at i:70450564 original size:14 final size:13
Alignment explanation
Indices: 70450538--70450573 Score: 54
Period size: 14 Copynumber: 2.7 Consensus size: 13
70450528 TGCCGAGGTA
70450538 TTTTCAAAATCTG
1 TTTTCAAAATCTG
*
70450551 TTTTGCAAATTCTG
1 TTTT-CAAAATCTG
70450565 TTTTCAAAA
1 TTTTCAAAA
70450574 ATCAACTCAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
13 8 0.40
14 12 0.60
ACGTcount: A:0.31, C:0.14, G:0.08, T:0.47
Consensus pattern (13 bp):
TTTTCAAAATCTG
Found at i:70450592 original size:88 final size:86
Alignment explanation
Indices: 70450305--70450606 Score: 340
Period size: 89 Copynumber: 3.5 Consensus size: 86
70450295 TTAATTTTTG
* * * *
70450305 TTTCAAAACTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAA
1 TTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAA
** * *
70450370 TTTCTG--TTCAATTTATGTT
66 AATCTGTTTTCAAATTATGCT
* * * * *
70450389 TTTCAAAAATCAACTCATATTGAGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGATATTTTCAA
1 TTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAA
* * *
70450454 TTAATGTTTTTTTAAATTTATGCT
66 --AATCTGTTTTCAAA-TTATGCT
* * * *
70450478 TTTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAGGTTACATGCCGAGGTATTTTC
1 TTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGG--ACACGCTGAGGTATTTTC
*
70450543 AAAATCTGTTTTGCAAATTCTG-T
64 AAAATCTGTTTT-CAAATTATGCT
70450566 TTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCT
1 TTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCT
70450607 TTGCTCACGT
Statistics
Matches: 181, Mismatches: 29, Indels: 12
0.82 0.13 0.05
Matches are distributed among these distances:
84 56 0.31
86 2 0.01
88 44 0.24
89 60 0.33
90 3 0.02
91 16 0.09
ACGTcount: A:0.30, C:0.16, G:0.19, T:0.35
Consensus pattern (86 bp):
TTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAA
AATCTGTTTTCAAATTATGCT
Found at i:70452478 original size:21 final size:21
Alignment explanation
Indices: 70452421--70452512 Score: 75
Period size: 23 Copynumber: 4.2 Consensus size: 21
70452411 ATTTACTTTT
70452421 TATAT-TTTA-ATATTATTAT-
1 TATATGTTTATATA-TATTATG
*
70452440 TATCATGATTACTATATATTAGTG
1 TAT-ATGTTTA-TATATATTA-TG
70452464 TATAT-TTTATATATATATATG
1 TATATGTTTATATATAT-TATG
*
70452485 TATATGTTTTTAATATATTTATG
1 TATATGTTTAT-ATATA-TTATG
70452508 TATAT
1 TATAT
70452513 ACTTATGTAG
Statistics
Matches: 60, Mismatches: 3, Indels: 16
0.76 0.04 0.20
Matches are distributed among these distances:
19 3 0.05
20 2 0.03
21 17 0.28
22 14 0.23
23 20 0.33
24 4 0.07
ACGTcount: A:0.35, C:0.02, G:0.07, T:0.57
Consensus pattern (21 bp):
TATATGTTTATATATATTATG
Found at i:70452478 original size:23 final size:23
Alignment explanation
Indices: 70452421--70452512 Score: 74
Period size: 21 Copynumber: 4.2 Consensus size: 23
70452411 ATTTACTTTT
70452421 TATAT-TTTA-ATAT-TATTAT-
1 TATATGTTTATATATATATTATG
* *
70452440 TATCATGATTA-CTATATATTAGTG
1 TAT-ATGTTTATATATATATTA-TG
70452464 TATAT-TTTATATATATA-TATG
1 TATATGTTTATATATATATTATG
*
70452485 TATATGTTTTTA-ATATATTTATG
1 TATATGTTTATATATATA-TTATG
70452508 TATAT
1 TATAT
70452513 ACTTATGTAG
Statistics
Matches: 59, Mismatches: 5, Indels: 14
0.76 0.06 0.18
Matches are distributed among these distances:
19 3 0.05
20 2 0.03
21 18 0.31
22 15 0.25
23 18 0.31
24 3 0.05
ACGTcount: A:0.35, C:0.02, G:0.07, T:0.57
Consensus pattern (23 bp):
TATATGTTTATATATATATTATG
Found at i:70452710 original size:18 final size:18
Alignment explanation
Indices: 70452667--70452711 Score: 56
Period size: 18 Copynumber: 2.5 Consensus size: 18
70452657 CACTATTTTA
*
70452667 TATATATTTCTAATTCAT
1 TATATATTTCTAAATCAT
*
70452685 TGTATATTTCTAACATCAT
1 TATATATTTCTAA-ATCAT
70452704 TAT-TATTT
1 TATATATTT
70452712 ATATATATGT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
18 17 0.74
19 6 0.26
ACGTcount: A:0.31, C:0.11, G:0.02, T:0.56
Consensus pattern (18 bp):
TATATATTTCTAAATCAT
Found at i:70452787 original size:9 final size:9
Alignment explanation
Indices: 70452770--70452804 Score: 52
Period size: 9 Copynumber: 3.9 Consensus size: 9
70452760 ATCATTTCTA
70452770 ATATATATT
1 ATATATATT
*
70452779 ATATGTATT
1 ATATATATT
*
70452788 TTATATATT
1 ATATATATT
70452797 ATATATAT
1 ATATATAT
70452805 ATTTAATGTT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (9 bp):
ATATATATT
Found at i:70452816 original size:18 final size:18
Alignment explanation
Indices: 70452771--70452809 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 18
70452761 TCATTTCTAA
*
70452771 TATATATTATATGTATTT
1 TATATATTATATATATTT
70452789 TATATATTATATATATATT
1 TATATATTATATATAT-TT
70452808 TA
1 TA
70452810 ATGTTATTAG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 15 0.79
19 4 0.21
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (18 bp):
TATATATTATATATATTT
Found at i:70453024 original size:24 final size:23
Alignment explanation
Indices: 70452992--70453036 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 23
70452982 ATACTAGTAC
70452992 ATATAC-TTTATTATATGAGTATAT
1 ATATACTTTTA-TATAT-AGTATAT
70453016 ATATACTTTTATATATAGTAT
1 ATATACTTTTATATATAGTAT
70453037 TATTTTCATA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
23 5 0.25
24 11 0.55
25 4 0.20
ACGTcount: A:0.38, C:0.04, G:0.07, T:0.51
Consensus pattern (23 bp):
ATATACTTTTATATATAGTATAT
Found at i:70453117 original size:21 final size:22
Alignment explanation
Indices: 70453059--70453117 Score: 66
Period size: 21 Copynumber: 2.6 Consensus size: 22
70453049 TTATCATATT
*
70453059 TATTATTATACCTATTATTTTCAC
1 TATTATTATA--TATTATTTTCAA
* *
70453083 TATTATCATTTATTATTTT-AA
1 TATTATTATATATTATTTTCAA
70453104 TATTATTATATATT
1 TATTATTATATATT
70453118 CATATATGTT
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
21 13 0.43
22 9 0.30
24 8 0.27
ACGTcount: A:0.32, C:0.08, G:0.00, T:0.59
Consensus pattern (22 bp):
TATTATTATATATTATTTTCAA
Found at i:70453234 original size:25 final size:24
Alignment explanation
Indices: 70453206--70453261 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 24
70453196 GTTATATTTT
*
70453206 CACTATTTTAT-GTATATACTTCAAA
1 CACTATTATATAGTATAT--TTCAAA
*
70453231 CACTA-TATATAGTATATTTCTAA
1 CACTATTATATAGTATATTTCAAA
70453254 CACTATTA
1 CACTATTA
70453262 CTATTTATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
23 10 0.37
24 6 0.22
25 11 0.41
ACGTcount: A:0.38, C:0.16, G:0.04, T:0.43
Consensus pattern (24 bp):
CACTATTATATAGTATATTTCAAA
Found at i:70455287 original size:14 final size:14
Alignment explanation
Indices: 70455249--70455291 Score: 54
Period size: 13 Copynumber: 3.1 Consensus size: 14
70455239 CAAAATGTAC
70455249 AATATAATTAAA-T
1 AATATAATTAAATT
70455262 AATATAAATTAAATT
1 AATAT-AATTAAATT
*
70455277 AA-ATAATTTAATT
1 AATATAATTAAATT
70455290 AA
1 AA
70455292 CTGTTTACTC
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
13 15 0.56
14 9 0.33
15 3 0.11
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (14 bp):
AATATAATTAAATT
Found at i:70460623 original size:22 final size:21
Alignment explanation
Indices: 70460597--70460642 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 21
70460587 CCTAGTAAGA
70460597 CTTCTCTTCATCTTTTCTATTT
1 CTTCTCTTCATCTTTTCT-TTT
**
70460619 CTTCTCTTTTTCTTTTCTTTT
1 CTTCTCTTCATCTTTTCTTTT
70460640 CTT
1 CTT
70460643 TTTCTTTGCA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 6 0.27
22 16 0.73
ACGTcount: A:0.04, C:0.26, G:0.00, T:0.70
Consensus pattern (21 bp):
CTTCTCTTCATCTTTTCTTTT
Found at i:70460628 original size:16 final size:15
Alignment explanation
Indices: 70460601--70460649 Score: 53
Period size: 16 Copynumber: 3.0 Consensus size: 15
70460591 GTAAGACTTC
70460601 TCTTCATCTTTTCTATT
1 TCTTC-TCTTTTCT-TT
70460618 TCTTCTCTTTTTCTTT
1 TCTTCTC-TTTTCTTT
*
70460634 TCTTTTCTTTTTCTTT
1 TCTTCTC-TTTTCTTT
70460650 GCATCATATT
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
16 19 0.63
17 11 0.37
ACGTcount: A:0.04, C:0.22, G:0.00, T:0.73
Consensus pattern (15 bp):
TCTTCTCTTTTCTTT
Found at i:70460634 original size:5 final size:5
Alignment explanation
Indices: 70460607--70460649 Score: 50
Period size: 5 Copynumber: 8.0 Consensus size: 5
70460597 CTTCTCTTCA
*
70460607 TCTTT TCTATT TCTTC TCTTTT TCTTT TCTTT TCTTTT TCTTT
1 TCTTT TCT-TT TCTTT TC-TTT TCTTT TCTTT TC-TTT TCTTT
70460650 GCATCATATT
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
5 19 0.58
6 14 0.42
ACGTcount: A:0.02, C:0.21, G:0.00, T:0.77
Consensus pattern (5 bp):
TCTTT
Found at i:70460645 original size:11 final size:11
Alignment explanation
Indices: 70460607--70460649 Score: 52
Period size: 11 Copynumber: 3.9 Consensus size: 11
70460597 CTTCTCTTCA
*
70460607 TCTTTTCTATT
1 TCTTTTCTTTT
*
70460618 TCTTCTCTTTT
1 TCTTTTCTTTT
70460629 TCTTTTC-TTT
1 TCTTTTCTTTT
70460639 TCTTTTTCTTT
1 TC-TTTTCTTT
70460650 GCATCATATT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
10 5 0.19
11 20 0.74
12 2 0.07
ACGTcount: A:0.02, C:0.21, G:0.00, T:0.77
Consensus pattern (11 bp):
TCTTTTCTTTT
Found at i:70464266 original size:107 final size:107
Alignment explanation
Indices: 70464080--70464293 Score: 376
Period size: 107 Copynumber: 2.0 Consensus size: 107
70464070 AATTGGAAGA
* *
70464080 CTTCTAGCCTTCAACTTGTACACTACCAATTCAAAACTAACCTAGGTCTAATTTTCACGAACACA
1 CTTCTAGCCTTCAACTTGTACACTACCAAATCAAAACTAACCCAGGTCTAATTTTCACGAACACA
*
70464145 GTGCCCTAACTTTTCAAAACCTGCATCC-AAAAGAGAACCTCT
66 ATGCCCTAACTTTTCAAAACCTGCA-CCTAAAAGAGAACCTCT
*
70464187 CTTCTAGCCTTCAACTTGTACACTACCAAATCAAAACTAGCCCAGGTCTAATTTTCACGAACACA
1 CTTCTAGCCTTCAACTTGTACACTACCAAATCAAAACTAACCCAGGTCTAATTTTCACGAACACA
70464252 ATGCCCTAACTTTTCAAAACCTGCACCTAAAAGAGAACCTCT
66 ATGCCCTAACTTTTCAAAACCTGCACCTAAAAGAGAACCTCT
70464294 GTTAAAAAAT
Statistics
Matches: 102, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
106 2 0.02
107 100 0.98
ACGTcount: A:0.34, C:0.30, G:0.09, T:0.26
Consensus pattern (107 bp):
CTTCTAGCCTTCAACTTGTACACTACCAAATCAAAACTAACCCAGGTCTAATTTTCACGAACACA
ATGCCCTAACTTTTCAAAACCTGCACCTAAAAGAGAACCTCT
Found at i:70469061 original size:22 final size:23
Alignment explanation
Indices: 70469036--70469087 Score: 65
Period size: 22 Copynumber: 2.3 Consensus size: 23
70469026 TGAATTAATT
70469036 TTAATTTTAAT-TT-AAAAGAACG
1 TTAATTTTAATCTTCAAAAGAA-G
*
70469058 TTAA-TTTAATCTTCAAAATAAG
1 TTAATTTTAATCTTCAAAAGAAG
70469080 TTAATTTT
1 TTAATTTT
70469088 TAAATAATTA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
21 6 0.23
22 11 0.42
23 9 0.35
ACGTcount: A:0.42, C:0.06, G:0.06, T:0.46
Consensus pattern (23 bp):
TTAATTTTAATCTTCAAAAGAAG
Found at i:70472958 original size:6 final size:6
Alignment explanation
Indices: 70472947--70472980 Score: 68
Period size: 6 Copynumber: 5.7 Consensus size: 6
70472937 ACAAATTTCT
70472947 AAATAA AAATAA AAATAA AAATAA AAATAA AAAT
1 AAATAA AAATAA AAATAA AAATAA AAATAA AAAT
70472981 GAATTGTTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (6 bp):
AAATAA
Found at i:70484672 original size:31 final size:31
Alignment explanation
Indices: 70484634--70484693 Score: 120
Period size: 31 Copynumber: 1.9 Consensus size: 31
70484624 TATTCTGGCT
70484634 TTGTTTATTGCTTTATATGCCTTCCATCAAC
1 TTGTTTATTGCTTTATATGCCTTCCATCAAC
70484665 TTGTTTATTGCTTTATATGCCTTCCATCA
1 TTGTTTATTGCTTTATATGCCTTCCATCA
70484694 TGTTCTTTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.18, C:0.22, G:0.10, T:0.50
Consensus pattern (31 bp):
TTGTTTATTGCTTTATATGCCTTCCATCAAC
Found at i:70486392 original size:23 final size:23
Alignment explanation
Indices: 70486364--70486411 Score: 71
Period size: 23 Copynumber: 2.1 Consensus size: 23
70486354 TTCTTGAATA
*
70486364 ATGGCTCTC-TGAAGCTTCCTGAT
1 ATGGCTCGCTTGAA-CTTCCTGAT
70486387 ATGGCTCGCTTGAACTTCCTGAT
1 ATGGCTCGCTTGAACTTCCTGAT
70486410 AT
1 AT
70486412 ATGGCTGTTC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 19 0.83
24 4 0.17
ACGTcount: A:0.19, C:0.25, G:0.21, T:0.35
Consensus pattern (23 bp):
ATGGCTCGCTTGAACTTCCTGAT
Found at i:70486563 original size:25 final size:25
Alignment explanation
Indices: 70486448--70486563 Score: 67
Period size: 25 Copynumber: 4.7 Consensus size: 25
70486438 TGGCTCTTCG
* * *
70486448 GAGCTACCCGTTAT-TGGATCACAT
1 GAGCTTCCTGTTATATGGCTCACAT
* * **
70486472 GAGCTTCTTGAT-TATGGCTCTTAT
1 GAGCTTCCTGTTATATGGCTCACAT
* **
70486496 GAGCTTCCTATTATACAGCTCGA-AT
1 GAGCTTCCTGTTATATGGCTC-ACAT
* * ** *
70486521 AAGCATCCCATTACATGGCTCACAT
1 GAGCTTCCTGTTATATGGCTCACAT
70486546 GAGCTTCCTGTTATATGG
1 GAGCTTCCTGTTATATGG
70486564 TTCGAGAGAG
Statistics
Matches: 64, Mismatches: 24, Indels: 7
0.67 0.25 0.07
Matches are distributed among these distances:
23 1 0.02
24 25 0.39
25 38 0.59
ACGTcount: A:0.24, C:0.23, G:0.19, T:0.34
Consensus pattern (25 bp):
GAGCTTCCTGTTATATGGCTCACAT
Found at i:70490087 original size:29 final size:30
Alignment explanation
Indices: 70490040--70490107 Score: 84
Period size: 30 Copynumber: 2.3 Consensus size: 30
70490030 TTGCCCAAGA
* *
70490040 GTAAATACTCAAAATTTGAAGGATTAA-AGT
1 GTAAATA-TCAAAAGTTGAAGGACTAATAGT
*
70490070 GTAAATATGAAAAGTTGAAGGACTAATAGT
1 GTAAATATCAAAAGTTGAAGGACTAATAGT
*
70490100 GAAAATAT
1 GTAAATAT
70490108 TTTAAGGGTG
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
29 16 0.48
30 17 0.52
ACGTcount: A:0.49, C:0.04, G:0.19, T:0.28
Consensus pattern (30 bp):
GTAAATATCAAAAGTTGAAGGACTAATAGT
Found at i:70492583 original size:46 final size:46
Alignment explanation
Indices: 70492531--70492758 Score: 350
Period size: 46 Copynumber: 5.0 Consensus size: 46
70492521 AGTATGCTCT
*
70492531 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
70492577 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGTAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
70492623 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
70492669 CTGATATGAAATGTGTAAGACCATGGTTGAAAAATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * * *
70492715 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
70492759 TCATGTCAAA
Statistics
Matches: 170, Mismatches: 11, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
45 1 0.01
46 169 0.99
ACGTcount: A:0.38, C:0.14, G:0.24, T:0.23
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:70497363 original size:21 final size:22
Alignment explanation
Indices: 70497316--70497378 Score: 58
Period size: 21 Copynumber: 3.0 Consensus size: 22
70497306 CAGAAGTAGT
70497316 ATACGACACATAAAGTGCCTGA
1 ATACGACACATAAAGTGCCTGA
***
70497338 A-ACGACACATGTGGTGCCT-A
1 ATACGACACATAAAGTGCCTGA
* * *
70497358 ATACGAAATATATAGTGCCTG
1 ATACGACACATAAAGTGCCTG
70497379 CCGGCAAAGT
Statistics
Matches: 32, Mismatches: 7, Indels: 4
0.74 0.16 0.09
Matches are distributed among these distances:
20 2 0.06
21 29 0.91
22 1 0.03
ACGTcount: A:0.37, C:0.21, G:0.21, T:0.22
Consensus pattern (22 bp):
ATACGACACATAAAGTGCCTGA
Found at i:70498217 original size:5 final size:5
Alignment explanation
Indices: 70498205--70498263 Score: 54
Period size: 5 Copynumber: 12.0 Consensus size: 5
70498195 TTACTTTACC
*
70498205 ATAT- ATATA ATATA ATAATA ATAT- A-ATA ATATAA TATATA ATAAA
1 ATATA ATATA ATATA AT-ATA ATATA ATATA ATAT-A -ATATA ATATA
70498250 ATATA ATA-A ATATA
1 ATATA ATATA ATATA
70498264 TTTATTATTT
Statistics
Matches: 46, Mismatches: 2, Indels: 13
0.75 0.03 0.21
Matches are distributed among these distances:
3 2 0.04
4 10 0.22
5 23 0.50
6 7 0.15
7 4 0.09
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (5 bp):
ATATA
Found at i:70498280 original size:3 final size:3
Alignment explanation
Indices: 70498211--70498258 Score: 52
Period size: 3 Copynumber: 17.3 Consensus size: 3
70498201 TACCATATAT
70498211 ATA AT- ATA ATA ATA AT- ATA ATA AT- ATA ATA TATA ATA A-A AT-
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA ATA ATA ATA
70498252 ATA ATA A
1 ATA ATA A
70498259 ATATATTTAT
Statistics
Matches: 39, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
2 10 0.26
3 26 0.67
4 3 0.08
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
ATA
Found at i:70498898 original size:20 final size:20
Alignment explanation
Indices: 70498852--70498898 Score: 53
Period size: 20 Copynumber: 2.4 Consensus size: 20
70498842 AGTCCTTTTT
*
70498852 CCTAATTTCTCCTAATTAAG
1 CCTAATTTCACCTAATTAAG
70498872 -CTAAATTT-ACCTAATTAAAG
1 CCT-AATTTCACCTAATT-AAG
70498892 CCTAATT
1 CCTAATT
70498899 AGACACACTA
Statistics
Matches: 23, Mismatches: 1, Indels: 6
0.77 0.03 0.20
Matches are distributed among these distances:
19 9 0.39
20 12 0.52
21 2 0.09
ACGTcount: A:0.36, C:0.21, G:0.04, T:0.38
Consensus pattern (20 bp):
CCTAATTTCACCTAATTAAG
Found at i:70503913 original size:17 final size:18
Alignment explanation
Indices: 70503886--70503922 Score: 51
Period size: 17 Copynumber: 2.1 Consensus size: 18
70503876 ATAATAGTAA
70503886 TAATAAAATGTTAATA-AG
1 TAATAAAATG-TAATATAG
70503904 TAAT-AAATGTAATATAG
1 TAATAAAATGTAATATAG
70503921 TA
1 TA
70503923 CTAGAAATAC
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 5 0.28
17 9 0.50
18 4 0.22
ACGTcount: A:0.54, C:0.00, G:0.11, T:0.35
Consensus pattern (18 bp):
TAATAAAATGTAATATAG
Found at i:70504480 original size:3 final size:3
Alignment explanation
Indices: 70504208--70504469 Score: 89
Period size: 3 Copynumber: 89.0 Consensus size: 3
70504198 TTGCATTAAC
* * * * * *
70504208 AAT AAT AAT AGT AAG AAT AAT AAC GAT AAT -AT AAC AAT AAT AGT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * *
70504255 AA- AA- AAT AAT AAC AAT AAT AGA- AAT AAT AAA AAT AAA AAT AA-
1 AAT AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT AAT
* * * * * * *
70504297 AA- AAGGT AACG AA- AAT AAT ACT GAC ACT AAC AAT AAT ACT AAT AAT
1 AAT AA--T AA-T AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * * *
70504343 AAC AAT -AT ATT AAT AAT ACT GAT -AT ATT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * * * * *
70504389 AAT AAT AGT AGT AGT AGT AGA- AAT AAC AAT CAT -AT AAGT AGT AAT
1 AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT AA-T AAT AAT
* ** *
70504434 AAT ACA- CAT AGG AAT AAT AAT AAT AAT AGT AAT AAT
1 AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
70504470 TTGAATAATA
Statistics
Matches: 187, Mismatches: 56, Indels: 32
0.68 0.20 0.12
Matches are distributed among these distances:
2 21 0.11
3 158 0.84
4 6 0.03
5 2 0.01
ACGTcount: A:0.60, C:0.06, G:0.08, T:0.27
Consensus pattern (3 bp):
AAT
Found at i:70509562 original size:18 final size:20
Alignment explanation
Indices: 70509526--70509566 Score: 57
Period size: 19 Copynumber: 2.1 Consensus size: 20
70509516 ACTTGTAAGT
70509526 ATATATATGTGAATAATTTG
1 ATATATATGTGAATAATTTG
* *
70509546 ATAT-TATGTGATTATTTTG
1 ATATATATGTGAATAATTTG
70509565 AT
1 AT
70509567 GATAAAACAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 15 0.79
20 4 0.21
ACGTcount: A:0.34, C:0.00, G:0.15, T:0.51
Consensus pattern (20 bp):
ATATATATGTGAATAATTTG
Found at i:70510085 original size:50 final size:50
Alignment explanation
Indices: 70509919--70510314 Score: 334
Period size: 50 Copynumber: 7.9 Consensus size: 50
70509909 ATCCATTGTG
* * *
70509919 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATA
1 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAGTTA
* * * * * * * *
70509969 GGTCGCATGTGTAGTACTAAGTCCAGGCAACTATGCGTACTC-GTTAACTT-
1 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTAC-CAGAT-AGTTA
* * * * *
70510019 TGATCACGTATGTAGTACTAAGTGCA-GCGTACTACGTGTATCAGATGGTTA
1 AG-TCACGTGTGTAGTACTAAGTGCAGGC-TACTATGTGTACCAGATAGTTA
* *
70510070 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGATA
1 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAGTTA
* * * * * * * *
70510120 GGTCGCATGTGTAGTACTAAGTACAGGCTACTATGCGTACCCGTTAACTT-
1 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGAT-AGTTA
* * *
70510170 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGATGGTTA
1 AG-TCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAGTTA
* * ** * *
70510221 AGTCACGCGTGTAGTACTAAGTGCAGGGTACTACATGTACCAGATTGATA
1 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAGTTA
* ** **
70510271 GGTTGCCAGTGTAGTACTAAGTGCAGGCTACTAT-TCGTACCAGA
1 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGT-GTACCAGA
70510315 GAGCTTCGGT
Statistics
Matches: 271, Mismatches: 64, Indels: 22
0.76 0.18 0.06
Matches are distributed among these distances:
49 1 0.00
50 198 0.73
51 72 0.27
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.29
Consensus pattern (50 bp):
AGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAGTTA
Found at i:70510097 original size:101 final size:101
Alignment explanation
Indices: 70509921--70510109 Score: 272
Period size: 101 Copynumber: 1.9 Consensus size: 101
70509911 CCATTGTGAG
* * * *
70509921 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTAC
1 TCACGTATGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGATAAGTCACATGTGTAGTAC
70509986 TAAGTCCAGGCAACTATGCGTACTCGTTAACTTTGA
66 TAAGTCCAGGCAACTATGCGTACTCGTTAACTTTGA
* * *
70510022 TCACGTATGTAGTACTAAGTGCA-GCGTACTACGTGTATCAGATGGTTAAGTCACGTGTGTAGTA
1 TCACGTATGTAGTACTAAGTGCAGGC-TACTACGTGTACCAGATGGATAAGTCACATGTGTAGTA
* * *
70510086 CTAAGTGCAGGCTACTATGTGTAC
65 CTAAGTCCAGGCAACTATGCGTAC
70510110 CAGATTGATA
Statistics
Matches: 77, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
100 2 0.03
101 75 0.97
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (101 bp):
TCACGTATGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGATAAGTCACATGTGTAGTAC
TAAGTCCAGGCAACTATGCGTACTCGTTAACTTTGA
Found at i:70510129 original size:151 final size:151
Alignment explanation
Indices: 70509919--70510311 Score: 637
Period size: 151 Copynumber: 2.6 Consensus size: 151
70509909 ATCCATTGTG
70509919 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGT
1 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGT
* * * *
70509984 ACTAAGTCCAGGCAACTATGCGTACTCGTTAACTTTGATCACGTATGTAGTACTAAGTGCA-GCG
66 ACTAAGTACAGGCTACTATGCGTACCCGTTAACTTCGATCACGTATGTAGTACTAAGTGCAGGC-
70510048 TACTACGTGTATCAGATGGTTA
130 TACTACGTGTATCAGATGGTTA
*
70510070 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGATAGGTCGCATGTGTAGT
1 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGT
*
70510135 ACTAAGTACAGGCTACTATGCGTACCCGTTAACTTCGATCACGTGTGTAGTACTAAGTGCAGGCT
66 ACTAAGTACAGGCTACTATGCGTACCCGTTAACTTCGATCACGTATGTAGTACTAAGTGCAGGCT
*
70510200 ACTATGTGTATCAGATGGTTA
131 ACTACGTGTATCAGATGGTTA
* * * *
70510221 AGTCACGCGTGTAGTACTAAGTGCAGGGTACTACATGTACCAGATTGATAGGTTGCCA-GTGTAG
1 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCG-CATGTGTAG
* *
70510285 TACTAAGTGCAGGCTACTATTCGTACC
65 TACTAAGTACAGGCTACTATGCGTACC
70510312 AGAGAGCTTC
Statistics
Matches: 226, Mismatches: 14, Indels: 4
0.93 0.06 0.02
Matches are distributed among these distances:
151 222 0.98
152 4 0.02
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.30
Consensus pattern (151 bp):
AGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGT
ACTAAGTACAGGCTACTATGCGTACCCGTTAACTTCGATCACGTATGTAGTACTAAGTGCAGGCT
ACTACGTGTATCAGATGGTTA
Found at i:70510177 original size:101 final size:101
Alignment explanation
Indices: 70510072--70510253 Score: 283
Period size: 101 Copynumber: 1.8 Consensus size: 101
70510062 GATGGTTAAG
* * * *
70510072 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGATAGGTCGCATGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATGGATAAGTCACACGTGTAGTAC
70510137 TAAGTACAGGCTACTATGCGTACCCGTTAACTTCGA
66 TAAGTACAGGCTACTATGCGTACCCGTTAACTTCGA
* * *
70510173 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGATGGTTAAGTCACGCGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATGGATAAGTCACACGTGTAGTAC
* *
70510238 TAAGTGCAGGGTACTA
66 TAAGTACAGGCTACTA
70510254 CATGTACCAG
Statistics
Matches: 72, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
101 72 1.00
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (101 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATGGATAAGTCACACGTGTAGTAC
TAAGTACAGGCTACTATGCGTACCCGTTAACTTCGA
Found at i:70517146 original size:40 final size:40
Alignment explanation
Indices: 70517052--70517276 Score: 247
Period size: 40 Copynumber: 5.6 Consensus size: 40
70517042 TATTCGAATA
* ** * *
70517052 ATATCCGGGCTAAGTCCCGAAGGTTTTTGTGATAGGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTA-GCGACT
* * * * *
70517093 ATAAT-CGGACTAAGATCCGAAGGCATTCGTGCGAGTTG-CT
1 AT-ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-CGACT
* *
70517133 ATATCCTGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
*
70517173 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
* * * *
70517213 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
*
70517253 ACATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
70517277 CTTGTGCAAG
Statistics
Matches: 155, Mismatches: 25, Indels: 9
0.82 0.13 0.05
Matches are distributed among these distances:
39 3 0.02
40 125 0.81
41 25 0.16
42 2 0.01
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
Found at i:70517224 original size:80 final size:80
Alignment explanation
Indices: 70517052--70517312 Score: 278
Period size: 80 Copynumber: 3.3 Consensus size: 80
70517042 TATTCGAATA
** * * *
70517052 ATATCCGGGCTAAGTCCCGAAGGTTTTTGTGATAGGTGACTATAAT-CGGACTAAGATCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-GTGACTAT-ATCCGGGCTAAGACCCGAAGG
*
70517116 CATTCGTGCGAGTTGCT
64 CATTCGTGCGAGTCGCT
* * * * *
70517133 ATATCCTGGCTAAGACCCGAAGGCATTTGTGCTAGCGATTATATCCGGGCTAAAACCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
* *
70517198 TTTGTGCTAG-CGACT
66 TTCGTGCGAGTCG-CT
* * * *
70517213 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACCACATCCGGGCTAAGACCCGAAGGCC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
* * *
70517278 TT-GTGCAAGTAGTT
66 TTCGTGCGAGTCGCT
*
70517292 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
70517313 ATTACTTGAG
Statistics
Matches: 151, Mismatches: 26, Indels: 9
0.81 0.14 0.05
Matches are distributed among these distances:
78 14 0.09
79 16 0.11
80 92 0.61
81 29 0.19
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCGCT
Found at i:70517266 original size:120 final size:120
Alignment explanation
Indices: 70517052--70517312 Score: 291
Period size: 120 Copynumber: 2.2 Consensus size: 120
70517042 TATTCGAATA
* ** *
70517052 ATATCCGGGCTAAGTCCCGAAGGTTTTTGTGATAGGTGACTATAATCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAATCCCGAAGGCATTTGTGATAGGCGACTATAATCGGACTAAGATCCGAAGGC
* * * * * *
70517117 ATTCGTGCGAGTTGCTATATCCTGGCTAAGACCCGAAGGCATTTGTGCTAGCGA-TT
66 ATTCATGCGAGTTGCCACATCCGGGCTAAGACCCGAAGGC-CTTGTGCAAG-GAGTT
* * *
70517173 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTA-GCGACTAT-ATCCGGGCTAAG-TCCCGAAG
1 ATATCCGGGCTAAATCCCGAAGGCATTTGTGATAGGCGACTATAAT-CGGACTAAGAT-CCGAAG
* * *
70517235 GCATTTATGCTAG-TGACCACATCCGGGCTAAGACCCGAAGGCCTTGTGCAAGTAGTT
64 GCATTCATGCGAGTTG-CCACATCCGGGCTAAGACCCGAAGGCCTTGTGCAAGGAGTT
70517292 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAATCCCGAAG
70517313 ATTACTTGAG
Statistics
Matches: 119, Mismatches: 17, Indels: 11
0.81 0.12 0.07
Matches are distributed among these distances:
118 15 0.13
119 21 0.18
120 54 0.45
121 29 0.24
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (120 bp):
ATATCCGGGCTAAATCCCGAAGGCATTTGTGATAGGCGACTATAATCGGACTAAGATCCGAAGGC
ATTCATGCGAGTTGCCACATCCGGGCTAAGACCCGAAGGCCTTGTGCAAGGAGTT
Found at i:70521993 original size:40 final size:40
Alignment explanation
Indices: 70521933--70522077 Score: 202
Period size: 40 Copynumber: 3.6 Consensus size: 40
70521923 CAAGCACAAT
* * *
70521933 TGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCATAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAAA
* *
70521973 TGCTTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAAA
* *
70522013 TGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTAGCATAAA
1 TGCCTTCGGGTCTTAGCCCGGAT-ATATCAACTCGCATAAA
*
70522053 TGCCTTCGGGACTTAGCCCGGATAT
1 TGCCTTCGGGTCTTAGCCCGGATAT
70522078 CATTCAAATG
Statistics
Matches: 93, Mismatches: 11, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
39 1 0.01
40 88 0.95
41 4 0.04
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
TGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAAA
Done.