Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 216 of 349
Found at i:70529697 original size:40 final size:40
Alignment explanation
Indices: 70529652--70529842 Score: 217
Period size: 40 Copynumber: 4.8 Consensus size: 40
70529642 ATAACCACAA
* * *
70529652 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
*
70529692 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
* * *
70529732 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC
* * * * *
70529772 GCATAAATGCCTTC-GGACTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC
* *
70529811 GCATAAATGCCTTCGGGACTTAGCCCGGATAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAT
70529843 CATTCAAATG
Statistics
Matches: 140, Mismatches: 9, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
39 39 0.28
40 97 0.69
41 4 0.03
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
Found at i:70529736 original size:80 final size:79
Alignment explanation
Indices: 70529623--70529841 Score: 237
Period size: 80 Copynumber: 2.8 Consensus size: 79
70529613 ACCCAAGTTT
* * * * * * * *
70529623 CTTCGGAATTTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGGT-ATAG
1 CTTCGG-ACTTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAAG
*
70529686 CAACTCGCACAAATGC
65 C-ACTAGCACAAATGC
* * *
70529702 CTTCGGGTCTTAGCCCGGAT-ATATCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAA
1 CTTC-GGACTTAGCCCGGATAAAATC-ACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAA
* *
70529766 TCACTAGCATAAATGC
64 GCACTAGCACAAATGC
* *
70529782 CTTCGGACTTAGCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGGATA
1 CTTCGGACTTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATA
70529842 TCATTCAAAT
Statistics
Matches: 116, Mismatches: 19, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
79 56 0.48
80 57 0.49
81 3 0.03
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (79 bp):
CTTCGGACTTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAAGC
ACTAGCACAAATGC
Found at i:70529802 original size:39 final size:40
Alignment explanation
Indices: 70529696--70529841 Score: 224
Period size: 40 Copynumber: 3.7 Consensus size: 40
70529686 CAACTCGCAC
* * * *
70529696 AAATGCCTTCGGGTCTTAGCCCGGAT-ATATCAACTCGCAC
1 AAATGCCTTCGGGACTTAGCCCGGATAAAATC-ACTAGCAT
*
70529736 AAATGCCTTCGGGTCTTAGCCCGGATAAAATCACTAGCAT
1 AAATGCCTTCGGGACTTAGCCCGGATAAAATCACTAGCAT
70529776 AAATGCCTTC-GGACTTAGCCCGGATAAAATCACTAGCAT
1 AAATGCCTTCGGGACTTAGCCCGGATAAAATCACTAGCAT
70529815 AAATGCCTTCGGGACTTAGCCCGGATA
1 AAATGCCTTCGGGACTTAGCCCGGATA
70529842 TCATTCAAAT
Statistics
Matches: 100, Mismatches: 4, Indels: 4
0.93 0.04 0.04
Matches are distributed among these distances:
39 38 0.38
40 58 0.58
41 4 0.04
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
AAATGCCTTCGGGACTTAGCCCGGATAAAATCACTAGCAT
Found at i:70536383 original size:40 final size:40
Alignment explanation
Indices: 70536259--70536483 Score: 265
Period size: 40 Copynumber: 5.6 Consensus size: 40
70536249 TATTCGAATA
* *
70536259 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTA-GTGACT
* * * *
70536300 ATAACCGGACTAAGATCCGAAGGCATTCGTG-TGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCT-AG-TGACT
* ** *
70536340 ATATCCTGGCTAAGACCCGAAGGCATTTGTGCTAGCAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
* *
70536380 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
* * *
70536420 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
*
70536460 ACATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
70536484 CTTGTGTAAG
Statistics
Matches: 155, Mismatches: 25, Indels: 9
0.82 0.13 0.05
Matches are distributed among these distances:
40 126 0.81
41 29 0.19
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
Found at i:70536433 original size:80 final size:80
Alignment explanation
Indices: 70536259--70536519 Score: 278
Period size: 80 Copynumber: 3.3 Consensus size: 80
70536249 TATTCGAATA
* * * *
70536259 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-GTGACTATATCCGGGCTAAGACCCGAAGGC
*
70536324 ATTCGTGTGAGTTGCT
65 ATTCGTGTGAGTCGCT
* * ** * *
70536340 ATATCCTGGCTAAGACCCGAAGGCATTTGTGCTAGCAATTATATCCGGGCTAAAACCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
*
70536405 TTTGTGCT-AG-CGACT
66 TTCGTG-TGAGTCG-CT
* * * *
70536420 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACCACATCCGGGCTAAGACCCGAAGGCC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
* * *
70536485 TT-GTGTAAGTAGTT
66 TTCGTGTGAGTCGCT
* *
70536499 ATAT-CTGGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
70536520 ATTACTTGAG
Statistics
Matches: 150, Mismatches: 26, Indels: 11
0.80 0.14 0.06
Matches are distributed among these distances:
78 16 0.11
79 11 0.07
80 91 0.61
81 32 0.21
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
TTCGTGTGAGTCGCT
Found at i:70536475 original size:120 final size:121
Alignment explanation
Indices: 70536259--70536483 Score: 296
Period size: 120 Copynumber: 1.9 Consensus size: 121
70536249 TATTCGAATA
** * *
70536259 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGC
* * * *
70536324 ATTCGTGTGAGTTGCTATATCCTGGCTAAGACCCGAAGGCATTTGTGCTAGCAATT
66 ATTCATGTGAGTTGCCACATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCAATT
* *
70536380 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTA-GCGACTATATCCGGGCTAAG-TCCCGAAGG
1 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGAT-CCGAAGG
*
70536443 CATTTATGCT-AG-TGACCACATCCGGGCTAAGACCCGAAGGC
65 CATTCATG-TGAGTTG-CCACATCCGGGCTAAGACCCGAAGGC
70536484 CTTGTGTAAG
Statistics
Matches: 90, Mismatches: 11, Indels: 7
0.83 0.10 0.06
Matches are distributed among these distances:
119 3 0.03
120 55 0.61
121 32 0.36
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (121 bp):
ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGC
ATTCATGTGAGTTGCCACATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCAATT
Found at i:70541140 original size:26 final size:29
Alignment explanation
Indices: 70541076--70541145 Score: 83
Period size: 29 Copynumber: 2.5 Consensus size: 29
70541066 GTCGTTTCTC
*
70541076 TTTTCTCCTCTACTGGCGTTCATCTCTTA
1 TTTTCTCCTCCACTGGCGTTCATCTCTTA
* * *
70541105 TTTTCCCCTCCATTGTCGTTCA-C-C-TA
1 TTTTCTCCTCCACTGGCGTTCATCTCTTA
70541131 TTTTCTCCTCCACTG
1 TTTTCTCCTCCACTG
70541146 CTATTTGCCT
Statistics
Matches: 35, Mismatches: 6, Indels: 3
0.80 0.14 0.07
Matches are distributed among these distances:
26 15 0.43
27 1 0.03
28 1 0.03
29 18 0.51
ACGTcount: A:0.10, C:0.36, G:0.09, T:0.46
Consensus pattern (29 bp):
TTTTCTCCTCCACTGGCGTTCATCTCTTA
Found at i:70543374 original size:4 final size:4
Alignment explanation
Indices: 70543367--70543408 Score: 50
Period size: 4 Copynumber: 10.0 Consensus size: 4
70543357 TTTTTGCTTG
70543367 TAAA TAAA TAAA -AAA TAAAA TGAAAA TAAA TAAA TAAA TAAA
1 TAAA TAAA TAAA TAAA T-AAA T--AAA TAAA TAAA TAAA TAAA
70543409 GGCTCATGTT
Statistics
Matches: 35, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
3 3 0.09
4 23 0.66
5 4 0.11
6 5 0.14
ACGTcount: A:0.76, C:0.00, G:0.02, T:0.21
Consensus pattern (4 bp):
TAAA
Found at i:70549267 original size:14 final size:14
Alignment explanation
Indices: 70549248--70549281 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
70549238 ACCCGAAGTG
*
70549248 GATGATATGATTAT
1 GATGATATGACTAT
*
70549262 GATGATATTACTAT
1 GATGATATGACTAT
70549276 GATGAT
1 GATGAT
70549282 GAAAGTCGTG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.35, C:0.03, G:0.21, T:0.41
Consensus pattern (14 bp):
GATGATATGACTAT
Found at i:70551040 original size:48 final size:47
Alignment explanation
Indices: 70550966--70551290 Score: 262
Period size: 48 Copynumber: 6.8 Consensus size: 47
70550956 ATATGTGTGT
* * * *
70550966 GCCAGCGTAAGACCATGTTTGAAACATGGCATCGACGATGTAATAAGA
1 GCCAGTGTAAGACCATGTTTGGAACATGGCATCGGC-ATGTAATGAGA
** * *
70551014 GCCAGCATAAGACCATGTTTGGAACATGGAATC-TCTAATGTAATGAGA
1 GCCAGTGTAAGACCATGTTTGGAACATGGCATCGGC--ATGTAATGAGA
* * * * * * * *
70551062 GCTAGTGTAGGACCATGTCTGGGACATGGCGTCGTCAT-TGATATGTGC
1 GCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATGT-A-ATGAGA
* * ** *
70551110 GCTAGTGTAAGACCATGTCTGGAACATGGCATCGGCCACATTATGAGA
1 GCCAGTGTAAGACCATGTTTGGAACATGGCATCGG-CATGTAATGAGA
** * *
70551158 GCCAACGTAAGACCAAGTTTGGGACATGGCATCGGCAT-TGAGATGAGA
1 GCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATGT-A-ATGAGA
* * * * *
70551206 GCTAGTGTAAGACCATGTTTGGGAGATGGCATCGGCCT-TGACATGTGA
1 GCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATGT-A-ATGAGA
70551254 GCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCA
1 GCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCA
70551291 ATGGTTTCAG
Statistics
Matches: 225, Mismatches: 44, Indels: 16
0.79 0.15 0.06
Matches are distributed among these distances:
46 2 0.01
47 6 0.03
48 212 0.94
49 4 0.02
50 1 0.00
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.24
Consensus pattern (47 bp):
GCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATGTAATGAGA
Found at i:70551235 original size:144 final size:144
Alignment explanation
Indices: 70550961--70551289 Score: 392
Period size: 144 Copynumber: 2.3 Consensus size: 144
70550951 GGGTGATATG
* * * * * ** *
70550961 TGTGTGCCAGCGTAAGACCATGTTTGAAACATGGCATCGACGATGTAATAAGAGCCAGCATAAGA
1 TGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCCACATAATAAGAGCCAACATAAGA
* * *
70551026 CCATGTTTGGAACATGGAATCTCTAATGTAATGAGAGCTAGTGTAGGACCATGTCTGGGACATGG
66 CCAAGTTTGGAACATGGAATCGCTAATGTAATGAGAGCTAGTGTAAGACCATGTCTGGGACATGG
* * *
70551091 CGTCGTCATTGATA
131 CATCGGCATTGACA
* * * * * *
70551105 TGTGCGCTAGTGTAAGACCATGTCTGGAACATGGCATCGGCCACATTATGAGAGCCAACGTAAGA
1 TGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCCACATAATAAGAGCCAACATAAGA
* * * * *
70551170 CCAAGTTTGGGACATGGCATCGGC-ATTG-AGATGAGAGCTAGTGTAAGACCATGTTTGGGAGAT
66 CCAAGTTTGGAACATGGAATC-GCTAATGTA-ATGAGAGCTAGTGTAAGACCATGTCTGGGACAT
*
70551233 GGCATCGGCCTTGACA
129 GGCATCGGCATTGACA
70551249 TGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGC
1 TGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGC
70551290 AATGGTTTCA
Statistics
Matches: 155, Mismatches: 28, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
143 1 0.01
144 153 0.99
145 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (144 bp):
TGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCCACATAATAAGAGCCAACATAAGA
CCAAGTTTGGAACATGGAATCGCTAATGTAATGAGAGCTAGTGTAAGACCATGTCTGGGACATGG
CATCGGCATTGACA
Found at i:70552437 original size:21 final size:21
Alignment explanation
Indices: 70552404--70552443 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
70552394 TTAAGAAGCC
*
70552404 ACACGGGCATGTTGCCCTGCT
1 ACACGGGCATGTTCCCCTGCT
**
70552425 ACACGGGTGTGTTCCCCTG
1 ACACGGGCATGTTCCCCTG
70552444 TCTGCTTGAA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.12, C:0.33, G:0.30, T:0.25
Consensus pattern (21 bp):
ACACGGGCATGTTCCCCTGCT
Found at i:70552903 original size:15 final size:15
Alignment explanation
Indices: 70552883--70552926 Score: 70
Period size: 15 Copynumber: 2.9 Consensus size: 15
70552873 TATGATATTG
70552883 TATTTTGGATTTCTC
1 TATTTTGGATTTCTC
*
70552898 TATTTTGGATTCCTC
1 TATTTTGGATTTCTC
*
70552913 TATTTTGGTTTTCT
1 TATTTTGGATTTCT
70552927 TGTCATCTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 26 1.00
ACGTcount: A:0.11, C:0.14, G:0.14, T:0.61
Consensus pattern (15 bp):
TATTTTGGATTTCTC
Found at i:70556088 original size:45 final size:44
Alignment explanation
Indices: 70556014--70556099 Score: 138
Period size: 45 Copynumber: 1.9 Consensus size: 44
70556004 GAACTATGTG
70556014 ATCTGAACTCATGAGTTGTGGTCTGAGTTCATGACATATGTGAC
1 ATCTGAACTCATGAGTTGTGGTCTGAGTTCATGACATATGTGAC
*
70556058 ATCTGAACTCATTGAGGTT-TGGTCTGAGTTCATGATATATGT
1 ATCTGAACTCA-TGA-GTTGTGGTCTGAGTTCATGACATATGT
70556100 TACACATGTT
Statistics
Matches: 39, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
44 11 0.28
45 25 0.64
46 3 0.08
ACGTcount: A:0.24, C:0.14, G:0.24, T:0.37
Consensus pattern (44 bp):
ATCTGAACTCATGAGTTGTGGTCTGAGTTCATGACATATGTGAC
Found at i:70562512 original size:6 final size:6
Alignment explanation
Indices: 70562503--70562570 Score: 63
Period size: 6 Copynumber: 12.0 Consensus size: 6
70562493 CTAAGAAAAT
* * * * *
70562503 AATAAA AAT--A ACTAAA AATAAC AATAAA CATAAA CAT-TA AATAAA
1 AATAAA AATAAA AATAAA AATAAA AATAAA AATAAA AATAAA AATAAA
70562548 AATAAA AATAAA AAT-AA AATAAA
1 AATAAA AATAAA AATAAA AATAAA
70562571 TAAACTTAAT
Statistics
Matches: 50, Mismatches: 8, Indels: 8
0.76 0.12 0.12
Matches are distributed among these distances:
4 3 0.06
5 8 0.16
6 39 0.78
ACGTcount: A:0.75, C:0.06, G:0.00, T:0.19
Consensus pattern (6 bp):
AATAAA
Found at i:70562551 original size:23 final size:23
Alignment explanation
Indices: 70562503--70562570 Score: 75
Period size: 23 Copynumber: 3.0 Consensus size: 23
70562493 CTAAGAAAAT
** *
70562503 AATAAAAATAACTA-AAAATAAC
1 AATAAAAATAAAAATAAAATAAA
* * *
70562525 AATAAACATAAACATTAAATAAA
1 AATAAAAATAAAAATAAAATAAA
70562548 AATAAAAATAAAAATAAAATAAA
1 AATAAAAATAAAAATAAAATAAA
70562571 TAAACTTAAT
Statistics
Matches: 37, Mismatches: 8, Indels: 1
0.80 0.17 0.02
Matches are distributed among these distances:
22 11 0.30
23 26 0.70
ACGTcount: A:0.75, C:0.06, G:0.00, T:0.19
Consensus pattern (23 bp):
AATAAAAATAAAAATAAAATAAA
Found at i:70564026 original size:18 final size:17
Alignment explanation
Indices: 70564003--70564036 Score: 59
Period size: 18 Copynumber: 1.9 Consensus size: 17
70563993 ACTAGCTAAG
70564003 AAATAATAATGAAGAAAA
1 AAATAATAA-GAAGAAAA
70564021 AAATAATAAGAAGAAA
1 AAATAATAAGAAGAAA
70564037 CGAAGTGAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.74, C:0.00, G:0.12, T:0.15
Consensus pattern (17 bp):
AAATAATAAGAAGAAAA
Found at i:70564115 original size:17 final size:18
Alignment explanation
Indices: 70564083--70564117 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
70564073 ACTACTAGTA
70564083 AAAATAAATTAAAATAAT
1 AAAATAAATTAAAATAAT
*
70564101 AAAAT-AATTATAATAAT
1 AAAATAAATTAAAATAAT
70564118 TATAATGGGA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (18 bp):
AAAATAAATTAAAATAAT
Found at i:70566388 original size:8 final size:8
Alignment explanation
Indices: 70566370--70566421 Score: 50
Period size: 9 Copynumber: 6.0 Consensus size: 8
70566360 GCAGGGGAAG
*
70566370 GAAAGAAA
1 GAAAAAAA
*
70566378 GAAAAAGA
1 GAAAAAAA
70566386 GAAAAGAAA
1 GAAAA-AAA
70566395 GAAAAAAAGA
1 G-AAAAAA-A
70566405 GAAAAGAAA
1 GAAAA-AAA
70566414 GAAAAAAA
1 GAAAAAAA
70566422 AGGGAAAATT
Statistics
Matches: 37, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
8 14 0.38
9 15 0.41
10 8 0.22
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (8 bp):
GAAAAAAA
Found at i:70566436 original size:21 final size:20
Alignment explanation
Indices: 70566370--70566429 Score: 95
Period size: 19 Copynumber: 3.0 Consensus size: 20
70566360 GCAGGGGAAG
70566370 GAAAGAAAGAAAAAGAGAAAA
1 GAAAGAAA-AAAAAGAGAAAA
70566391 GAAAG-AAAAAAAGAGAAAA
1 GAAAGAAAAAAAAGAGAAAA
*
70566410 GAAAGAAAAAAAAGGGAAAA
1 GAAAGAAAAAAAAGAGAAAA
70566430 TTAAAGATGT
Statistics
Matches: 37, Mismatches: 1, Indels: 3
0.90 0.02 0.07
Matches are distributed among these distances:
19 17 0.46
20 15 0.41
21 5 0.14
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (20 bp):
GAAAGAAAAAAAAGAGAAAA
Found at i:70568433 original size:46 final size:46
Alignment explanation
Indices: 70568366--70568593 Score: 332
Period size: 46 Copynumber: 5.0 Consensus size: 46
70568356 AGTGTGCTCT
70568366 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
70568412 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
70568458 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * **
70568504 GTGACATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * * *
70568550 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
70568594 TCATGTCAAA
Statistics
Matches: 170, Mismatches: 11, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
45 1 0.01
46 169 0.99
ACGTcount: A:0.39, C:0.15, G:0.25, T:0.22
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:70568924 original size:17 final size:17
Alignment explanation
Indices: 70568872--70568925 Score: 51
Period size: 15 Copynumber: 3.4 Consensus size: 17
70568862 ATATACATAA
*
70568872 GATATAAGGAAATG-AT
1 GATATAACGAAATGAAT
* * *
70568888 GATA-CATGAAAT-ATT
1 GATATAACGAAATGAAT
70568903 GATATAACGAAATGAAT
1 GATATAACGAAATGAAT
70568920 GATATA
1 GATATA
70568926 TGCTTATGAA
Statistics
Matches: 29, Mismatches: 6, Indels: 5
0.73 0.15 0.12
Matches are distributed among these distances:
15 11 0.38
16 10 0.34
17 8 0.28
ACGTcount: A:0.50, C:0.04, G:0.19, T:0.28
Consensus pattern (17 bp):
GATATAACGAAATGAAT
Found at i:70574036 original size:85 final size:85
Alignment explanation
Indices: 70573886--70574059 Score: 206
Period size: 85 Copynumber: 2.0 Consensus size: 85
70573876 ACCACCGTTG
* *** **
70573886 ATTTGCAATTATTGCCACTTGTTTTGGGTCCACAACATATTTGTAAATTAAATGAACTGCCACTT
1 ATTTGCAATTAGTGCCACTTGTTGAAGGTCCACAACATATTTGTAAATTAAACAAACTGCCACTT
*
70573951 GGCTCGTGATCGAACCACAT
66 GGCTCATGATCGAACCACAT
* * * *
70573971 ATTTGCAATTAGTGCCACTTGTTGAAGGTGCACAACA-AGTTTGTAGATTAAACAAATTGCTACT
1 ATTTGCAATTAGTGCCACTTGTTGAAGGTCCACAACATA-TTTGTAAATTAAACAAACTGCCACT
* **
70574035 TGGTTCATGATCGAACTGCAT
65 TGGCTCATGATCGAACCACAT
70574056 ATTT
1 ATTT
70574060 ACTATTACTA
Statistics
Matches: 74, Mismatches: 14, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
84 1 0.01
85 73 0.99
ACGTcount: A:0.29, C:0.18, G:0.18, T:0.34
Consensus pattern (85 bp):
ATTTGCAATTAGTGCCACTTGTTGAAGGTCCACAACATATTTGTAAATTAAACAAACTGCCACTT
GGCTCATGATCGAACCACAT
Found at i:70578162 original size:20 final size:20
Alignment explanation
Indices: 70578134--70578183 Score: 82
Period size: 20 Copynumber: 2.5 Consensus size: 20
70578124 ATTATATAAA
*
70578134 TCAATAAACGGATCAACCGG
1 TCAATAAACGGATCAACCAG
*
70578154 TCAAGAAACGGATCAACCAG
1 TCAATAAACGGATCAACCAG
70578174 TCAATAAACG
1 TCAATAAACG
70578184 CGAAAAAAGA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.44, C:0.24, G:0.18, T:0.14
Consensus pattern (20 bp):
TCAATAAACGGATCAACCAG
Found at i:70578392 original size:13 final size:13
Alignment explanation
Indices: 70578374--70578400 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
70578364 TTATAAATTG
70578374 AGGTTTAATTGAT
1 AGGTTTAATTGAT
70578387 AGGTTTAATTGAT
1 AGGTTTAATTGAT
70578400 A
1 A
70578401 AATACAAGTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.33, C:0.00, G:0.22, T:0.44
Consensus pattern (13 bp):
AGGTTTAATTGAT
Found at i:70585567 original size:4 final size:4
Alignment explanation
Indices: 70585560--70585619 Score: 77
Period size: 4 Copynumber: 15.0 Consensus size: 4
70585550 ATGGTTTATT
* * *
70585560 TATG TATG TATG TTTG TATG TATG TACG TATG TAAG TATAG -ATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TAT-G TATG TATG
70585608 TATG TATG TATG
1 TATG TATG TATG
70585620 AATAAACTTG
Statistics
Matches: 48, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
3 1 0.02
4 46 0.96
5 1 0.02
ACGTcount: A:0.27, C:0.02, G:0.25, T:0.47
Consensus pattern (4 bp):
TATG
Found at i:70587191 original size:22 final size:22
Alignment explanation
Indices: 70587160--70587203 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
70587150 AATAACTTAA
*
70587160 GTGGACGAAATGCAATCAACCT
1 GTGGACGAAATGCAACCAACCT
*
70587182 GTGGATGAAATGCAACCAACCT
1 GTGGACGAAATGCAACCAACCT
70587204 AACACGAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.36, C:0.23, G:0.23, T:0.18
Consensus pattern (22 bp):
GTGGACGAAATGCAACCAACCT
Found at i:70603933 original size:43 final size:42
Alignment explanation
Indices: 70603868--70603995 Score: 132
Period size: 43 Copynumber: 3.0 Consensus size: 42
70603858 AACTCGTACA
* * * *
70603868 ATGCCATATCCCAAAGATGGTCTTACATGTTATCACATATCG
1 ATGCCATATCCCAGACATGGTCTTACAAGTAATCACATATCG
* * * *
70603910 ATGCCACTATCCCAGACAGGGTCTTACACGAAATCA-ATTAACG
1 ATGCCA-TATCCCAGACATGGTCTTACAAGTAATCACA-TATCG
* *
70603953 ATGCCAATGTTCCAGACATGGTCTTACAAGTAATCACATATCG
1 ATGCC-ATATCCCAGACATGGTCTTACAAGTAATCACATATCG
70603996 GTAACCTAAT
Statistics
Matches: 69, Mismatches: 13, Indels: 7
0.78 0.15 0.08
Matches are distributed among these distances:
42 7 0.10
43 60 0.87
44 2 0.03
ACGTcount: A:0.33, C:0.25, G:0.16, T:0.27
Consensus pattern (42 bp):
ATGCCATATCCCAGACATGGTCTTACAAGTAATCACATATCG
Found at i:70611730 original size:10 final size:10
Alignment explanation
Indices: 70611715--70611742 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
70611705 CTTACTGGAG
70611715 ATATTCAAAA
1 ATATTCAAAA
70611725 ATATTCAAAA
1 ATATTCAAAA
70611735 ATATTCAA
1 ATATTCAA
70611743 CGAACCATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.57, C:0.11, G:0.00, T:0.32
Consensus pattern (10 bp):
ATATTCAAAA
Found at i:70613076 original size:35 final size:35
Alignment explanation
Indices: 70613030--70613098 Score: 129
Period size: 35 Copynumber: 2.0 Consensus size: 35
70613020 TTGCTACGTC
*
70613030 CAACATATGAAGGCATAATTTAAACTTAATGATTT
1 CAACATATGAAGGCATAAGTTAAACTTAATGATTT
70613065 CAACATATGAAGGCATAAGTTAAACTTAATGATT
1 CAACATATGAAGGCATAAGTTAAACTTAATGATT
70613099 GTAGCTTAAT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.43, C:0.12, G:0.13, T:0.32
Consensus pattern (35 bp):
CAACATATGAAGGCATAAGTTAAACTTAATGATTT
Found at i:70620232 original size:20 final size:22
Alignment explanation
Indices: 70620209--70620256 Score: 64
Period size: 20 Copynumber: 2.3 Consensus size: 22
70620199 AATATTTCTA
*
70620209 ATTTTTTAATT-TCTTAAA-AT
1 ATTTTATAATTATCTTAAATAT
*
70620229 ATTTTATAATTATTTTAAATAT
1 ATTTTATAATTATCTTAAATAT
70620251 ATTTTA
1 ATTTTA
70620257 ATATTTAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 10 0.42
21 6 0.25
22 8 0.33
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (22 bp):
ATTTTATAATTATCTTAAATAT
Found at i:70620258 original size:20 final size:20
Alignment explanation
Indices: 70620211--70620268 Score: 59
Period size: 20 Copynumber: 3.0 Consensus size: 20
70620201 TATTTCTAAT
*
70620211 TTTTTAATT-TCTTAAAATA
1 TTTTTAATTATTTTAAAATA
70620230 TTTTATAATTATTTT-AAATA
1 TTTT-TAATTATTTTAAAATA
*
70620250 TATTTTAA-TATTTAAAAAT
1 T-TTTTAATTATTTTAAAAT
70620269 TTAAAAGTAA
Statistics
Matches: 33, Mismatches: 2, Indels: 7
0.79 0.05 0.17
Matches are distributed among these distances:
19 9 0.27
20 18 0.55
21 6 0.18
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57
Consensus pattern (20 bp):
TTTTTAATTATTTTAAAATA
Found at i:70620866 original size:17 final size:16
Alignment explanation
Indices: 70620833--70620879 Score: 58
Period size: 17 Copynumber: 2.8 Consensus size: 16
70620823 ATTTTATTTG
*
70620833 AAATTTAATATACTTAT
1 AAATTTAATA-ATTTAT
70620850 AAATTATAATAATTTAT
1 AAATT-TAATAATTTAT
70620867 AAATTTTAATAAT
1 AAA-TTTAATAAT
70620880 ATTTTAAAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
17 20 0.74
18 7 0.26
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (16 bp):
AAATTTAATAATTTAT
Found at i:70620898 original size:20 final size:20
Alignment explanation
Indices: 70620853--70620898 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 20
70620843 TACTTATAAA
70620853 TTATAATAATTTATAAATTT
1 TTATAATAATTTATAAATTT
* *
70620873 TAATAATATTTTA-AAATTGT
1 TTATAATAATTTATAAATT-T
70620893 TTATAA
1 TTATAA
70620899 ATTACGATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
19 5 0.23
20 17 0.77
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (20 bp):
TTATAATAATTTATAAATTT
Found at i:70622038 original size:29 final size:28
Alignment explanation
Indices: 70621996--70622051 Score: 85
Period size: 30 Copynumber: 1.9 Consensus size: 28
70621986 AAACCTATCT
*
70621996 ACTTTCCCCAAAAATTTTTACTTCCTCCC
1 ACTTTCCCCAAAAACTTTTA-TTCCTCCC
70622025 ACTTTCTCCCAAAAACTTTTATTCCTC
1 ACTTTC-CCCAAAAACTTTTATTCCTC
70622052 TCCCATCCCA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
29 12 0.48
30 13 0.52
ACGTcount: A:0.25, C:0.36, G:0.00, T:0.39
Consensus pattern (28 bp):
ACTTTCCCCAAAAACTTTTATTCCTCCC
Found at i:70622140 original size:30 final size:31
Alignment explanation
Indices: 70622106--70622164 Score: 93
Period size: 31 Copynumber: 1.9 Consensus size: 31
70622096 TTTTTTTGAA
*
70622106 TATTTGT-CCCCAAAATTTTACTCTCTCATT
1 TATTTGTCCCCCAAAATTTTACTCCCTCATT
*
70622136 TATTTTTCCCCCAAAATTTTACTCCCTCA
1 TATTTGTCCCCCAAAATTTTACTCCCTCA
70622165 ACTACTAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
30 6 0.23
31 20 0.77
ACGTcount: A:0.24, C:0.31, G:0.02, T:0.44
Consensus pattern (31 bp):
TATTTGTCCCCCAAAATTTTACTCCCTCATT
Found at i:70627097 original size:19 final size:21
Alignment explanation
Indices: 70627044--70627101 Score: 66
Period size: 19 Copynumber: 2.7 Consensus size: 21
70627034 TAACTTCATT
*
70627044 TATTTTAATAAAATAATATTAA
1 TATTTTAATAAAAT-ATATGAA
70627066 TATTTTTATATAAAAT-T-TGAA
1 TA-TTTTA-ATAAAATATATGAA
70627087 TATTTTAATAAAATA
1 TATTTTAATAAAATA
70627102 ATATCTTAAC
Statistics
Matches: 32, Mismatches: 1, Indels: 8
0.78 0.02 0.20
Matches are distributed among these distances:
19 7 0.22
20 5 0.16
21 5 0.16
22 3 0.09
23 5 0.16
24 7 0.22
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (21 bp):
TATTTTAATAAAATATATGAA
Found at i:70627110 original size:16 final size:17
Alignment explanation
Indices: 70627085--70627117 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
70627075 ATAAAATTTG
*
70627085 AATATTTTAA-TAAAAT
1 AATATCTTAACTAAAAT
70627101 AATATCTTAACTAAAAT
1 AATATCTTAACTAAAAT
70627118 TTATTATATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.55, C:0.06, G:0.00, T:0.39
Consensus pattern (17 bp):
AATATCTTAACTAAAAT
Found at i:70627718 original size:34 final size:34
Alignment explanation
Indices: 70627645--70627728 Score: 82
Period size: 34 Copynumber: 2.5 Consensus size: 34
70627635 ATTTAGTGTT
**
70627645 ATTTTATAA-AAATTATTTAAATTAGGATTTATGG
1 ATTTTA-AATAAATTAAGTAAATTAGGATTTATGG
* * *
70627679 TTTTTAAATAGATTAAGTAAATTAGGGTTCTA-GG
1 ATTTTAAATAAATTAAGTAAATTAGGATT-TATGG
*
70627713 ATTTTAGATAAATTAA
1 ATTTTAAATAAATTAA
70627729 ATTAGGGTTT
Statistics
Matches: 40, Mismatches: 8, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
33 2 0.05
34 36 0.90
35 2 0.05
ACGTcount: A:0.40, C:0.01, G:0.14, T:0.44
Consensus pattern (34 bp):
ATTTTAAATAAATTAAGTAAATTAGGATTTATGG
Found at i:70627745 original size:22 final size:22
Alignment explanation
Indices: 70627720--70627761 Score: 84
Period size: 22 Copynumber: 1.9 Consensus size: 22
70627710 AGGATTTTAG
70627720 ATAAATTAAATTAGGGTTTAAA
1 ATAAATTAAATTAGGGTTTAAA
70627742 ATAAATTAAATTAGGGTTTA
1 ATAAATTAAATTAGGGTTTA
70627762 TGGTTTTTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.48, C:0.00, G:0.14, T:0.38
Consensus pattern (22 bp):
ATAAATTAAATTAGGGTTTAAA
Found at i:70627751 original size:86 final size:86
Alignment explanation
Indices: 70627661--70627818 Score: 273
Period size: 86 Copynumber: 1.8 Consensus size: 86
70627651 TAAAAATTAT
*
70627661 TTAAATTAGGATTTATGGTTTTTAAATAGATTAAGTAAATTAGGGTTCTAG-GATTTTAGATAAA
1 TTAAATTAGGATTTATGGTTTTTAAATAGATTAAGTAAATTAGGGCTCTAGAG-TTTTAGATAAA
70627725 TTAAATTAGGGTTTAAAATAAA
65 TTAAATTAGGGTTTAAAATAAA
*
70627747 TTAAATTAGGGTTTATGGTTTTTAAATAGATTAAGTAAATTAGGGCTCTAGAGTTTTAGATAAAT
1 TTAAATTAGGATTTATGGTTTTTAAATAGATTAAGTAAATTAGGGCTCTAGAGTTTTAGATAAAT
*
70627812 TAGATTA
66 TAAATTA
70627819 AGATTTTGGG
Statistics
Matches: 68, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
86 67 0.99
87 1 0.01
ACGTcount: A:0.39, C:0.02, G:0.18, T:0.41
Consensus pattern (86 bp):
TTAAATTAGGATTTATGGTTTTTAAATAGATTAAGTAAATTAGGGCTCTAGAGTTTTAGATAAAT
TAAATTAGGGTTTAAAATAAA
Found at i:70631141 original size:49 final size:49
Alignment explanation
Indices: 70631080--70631210 Score: 174
Period size: 49 Copynumber: 2.7 Consensus size: 49
70631070 ACATCAAAGT
*
70631080 CGATGCCATGTCCCAGACAGGTCTTACACTGACTTTCATATATTG-AGGC
1 CGATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATATA-TGAAGGC
* * * * * *
70631129 CGATGCCGTGTCCCAGATAGGTCTTACACTGGCTCTCATCTATGAATGT
1 CGATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATGAAGGC
*
70631178 CGATGCCATGTCCCAGACAGGTCTTACGCTGAC
1 CGATGCCATGTCCCAGACAGGTCTTACACTGAC
70631211 ACACATCAAG
Statistics
Matches: 70, Mismatches: 11, Indels: 2
0.84 0.13 0.02
Matches are distributed among these distances:
48 2 0.03
49 68 0.97
ACGTcount: A:0.22, C:0.28, G:0.22, T:0.27
Consensus pattern (49 bp):
CGATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATGAAGGC
Found at i:70632667 original size:37 final size:37
Alignment explanation
Indices: 70632626--70632700 Score: 141
Period size: 37 Copynumber: 2.0 Consensus size: 37
70632616 GATAGGTGAG
70632626 AATGAAAATGAATAAATACAAGAAGATTCAGGTATGT
1 AATGAAAATGAATAAATACAAGAAGATTCAGGTATGT
*
70632663 AATGAAAATGAATAAATACAGGAAGATTCAGGTATGT
1 AATGAAAATGAATAAATACAAGAAGATTCAGGTATGT
70632700 A
1 A
70632701 TGATACCTAT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.51, C:0.05, G:0.20, T:0.24
Consensus pattern (37 bp):
AATGAAAATGAATAAATACAAGAAGATTCAGGTATGT
Found at i:70635639 original size:68 final size:67
Alignment explanation
Indices: 70635567--70635716 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
70635557 CATCATGTGT
* * * *
70635567 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
70635629 ATGTAG
62 ATGTAG
** * *
70635635 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
70635700 AG
66 AG
70635702 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
70635717 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:70635672 original size:64 final size:64
Alignment explanation
Indices: 70635591--70635774 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
70635581 AGACATTATG
* *
70635591 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
70635655 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
70635720 AA
63 AA
* * * *
70635722 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
70635775 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:70640079 original size:68 final size:67
Alignment explanation
Indices: 70640007--70640156 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
70639997 CATCATGTGT
* * * *
70640007 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
70640069 ATGTAG
62 ATGTAG
** * *
70640075 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
70640140 AG
66 AG
70640142 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
70640157 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:70640112 original size:64 final size:64
Alignment explanation
Indices: 70640031--70640214 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
70640021 AGACATTATG
* *
70640031 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
70640095 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
70640160 AA
63 AA
* * * *
70640162 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
70640215 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:70663410 original size:92 final size:93
Alignment explanation
Indices: 70663298--70663468 Score: 308
Period size: 92 Copynumber: 1.8 Consensus size: 93
70663288 CGCCCATAAG
* *
70663298 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTC-GACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
70663362 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
70663390 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
70663455 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
70663469 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
92 50 0.67
93 25 0.33
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:70663442 original size:46 final size:46
Alignment explanation
Indices: 70663291--70663465 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
70663281 TGTAACCCGC
* * *
70663291 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
70663337 CCATAAGTGAACTC-GACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
70663386 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
70663429 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
70663466 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 10, Indels: 20
0.78 0.07 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 22 0.20
46 48 0.44
47 24 0.22
48 2 0.02
49 3 0.03
50 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:70670928 original size:93 final size:93
Alignment explanation
Indices: 70670815--70670986 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
70670805 CGCCCATAAG
***
70670815 CGAACTCGGACTCAACTCAACGAGCTCGGGTGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
70670880 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
70670908 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
70670973 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
70670987 TCAACCATCC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:70670983 original size:46 final size:46
Alignment explanation
Indices: 70670808--70670983 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
70670798 TGTAACCCGC
* ***
70670808 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGTGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
70670854 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
70670904 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
70670947 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
70670984 TGCTCAACCA
Statistics
Matches: 110, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:70672983 original size:48 final size:48
Alignment explanation
Indices: 70672892--70673017 Score: 184
Period size: 48 Copynumber: 2.7 Consensus size: 48
70672882 TATTTGTGCA
* *
70672892 CTAGTGTAAGA-CATATTTGGGACAT-ACATCGACCACATTATGAGAG
1 CTAGTGTAAGACCATGTTTGGGACATGACATTGACCACATTATGAGAG
* * *
70672938 CTAGTGTAAGACCATGTCTCGGACATGACATTGGCCACATTATGAGAG
1 CTAGTGTAAGACCATGTTTGGGACATGACATTGACCACATTATGAGAG
*
70672986 CCAGTGTAAGACCATGTTTGGGACATGACATT
1 CTAGTGTAAGACCATGTTTGGGACATGACATT
70673018 AGGATTGAGA
Statistics
Matches: 70, Mismatches: 8, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
46 11 0.16
47 11 0.16
48 48 0.69
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.26
Consensus pattern (48 bp):
CTAGTGTAAGACCATGTTTGGGACATGACATTGACCACATTATGAGAG
Found at i:70673121 original size:46 final size:44
Alignment explanation
Indices: 70673039--70673155 Score: 123
Period size: 46 Copynumber: 2.6 Consensus size: 44
70673029 GAGAGCTAGT
70673039 GTAAGACAT-TCTGGGACATGCATCGGCCTCTAGATGTAAGCCAAA
1 GTAAGACATGTCTGGGACATGCATCGGCCTCTAGATGT--GCCAAA
* **
70673084 GTAAGACATGTCTGGGACATGCATTGG-CTAC-ATGATGTGCCAGT
1 GTAAGACATGTCTGGGACATGCATCGGCCT-CTA-GATGTGCCAAA
*
70673128 GTAAGACCATGTCTAGGACATGGCATCG
1 GTAAGA-CATGTCTGGGACAT-GCATCG
70673156 CCTTAACGTG
Statistics
Matches: 62, Mismatches: 5, Indels: 9
0.82 0.07 0.12
Matches are distributed among these distances:
44 10 0.16
45 25 0.40
46 27 0.44
ACGTcount: A:0.28, C:0.21, G:0.27, T:0.24
Consensus pattern (44 bp):
GTAAGACATGTCTGGGACATGCATCGGCCTCTAGATGTGCCAAA
Found at i:70674393 original size:20 final size:21
Alignment explanation
Indices: 70674355--70674393 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
70674345 TTATAATGAA
70674355 CACACGGGCGTGTTGCCCTTC
1 CACACGGGCGTGTTGCCCTTC
70674376 CACACGGGCGTG-TGCCCT
1 CACACGGGCGTGTTGCCCT
70674394 GTTTCAAGGG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.10, C:0.38, G:0.31, T:0.21
Consensus pattern (21 bp):
CACACGGGCGTGTTGCCCTTC
Found at i:70679287 original size:49 final size:49
Alignment explanation
Indices: 70679217--70679404 Score: 241
Period size: 49 Copynumber: 3.8 Consensus size: 49
70679207 TGAGGTCATG
* *
70679217 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCGGATAATTAGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTAGTCGCA
* * * * ***
70679266 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTTTGATCATG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TTAG-TCGCA
*
70679317 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTAGTCGCA
* * *
70679366 TGTGTAGTACTAACTGCAGGCTACTATGCGTACCAGATA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
70679405 GCCTTGTCTA
Statistics
Matches: 119, Mismatches: 18, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
49 74 0.62
50 6 0.05
51 39 0.33
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.30
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTAGTCGCA
Found at i:70679385 original size:100 final size:100
Alignment explanation
Indices: 70679212--70679404 Score: 341
Period size: 100 Copynumber: 1.9 Consensus size: 100
70679202 TATTATGAGG
* *
70679212 TCATGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCGGATAATTAGTCGCATGTGTAGTACT
1 TCATGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTAGTCGCATGTGTAGTACT
* *
70679277 AAGTGCAGGCTACTATGCGTACCCGATAACTTTGA
66 AACTGCAGGCTACTATGCGTACCAGATAACTTTGA
*
70679312 TCATGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACT
1 TCATGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTAGTCGCATGTGTAGTACT
70679377 AACTGCAGGCTACTATGCGTACCAGATA
66 AACTGCAGGCTACTATGCGTACCAGATA
70679405 GCCTTGTCTA
Statistics
Matches: 88, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
100 88 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (100 bp):
TCATGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTAGTCGCATGTGTAGTACT
AACTGCAGGCTACTATGCGTACCAGATAACTTTGA
Found at i:70682891 original size:38 final size:38
Alignment explanation
Indices: 70682816--70683005 Score: 211
Period size: 38 Copynumber: 4.9 Consensus size: 38
70682806 GAATCTAGTC
* * * *
70682816 ACCAGCACAAAACCTGTGGGACTTTAAGCTCGGATATAAT
1 ACCAGCACGAAGCCTGCGGGA-TTTAA-CCCGGATATAAT
*
70682856 ACCAGCACTAAGCCTGCGGGATTTAACCCGGATATAAT
1 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAAT
* * * *
70682894 TCCAGCACGAAGCCTGCGGTATTTAACTCGGATATATT
1 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAAT
*
70682932 ACCAGCACGAAGCCTGCGGGATTTAACCCAGATATAAT
1 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAAT
* * *
70682970 TCCAGCA-TATAGCCTGCGGGTCTTTAAGCCCGGATA
1 ACCAGCACGA-AGCCTGCGGG-ATTTAA-CCCGGATA
70683006 CACATCAAAT
Statistics
Matches: 129, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
37 1 0.01
38 93 0.72
39 10 0.08
40 25 0.19
ACGTcount: A:0.30, C:0.25, G:0.22, T:0.23
Consensus pattern (38 bp):
ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAAT
Found at i:70682984 original size:76 final size:77
Alignment explanation
Indices: 70682838--70683005 Score: 250
Period size: 76 Copynumber: 2.2 Consensus size: 77
70682828 CCTGTGGGAC
* *
70682838 TTTAAGCTCGGATATAATACCAGCACTAAGCCTGCGGGATTTAACCCGGATATAATTCCAGCACG
1 TTTAAGCTCGGATATAATACCAGCACGAAGCCTGCGGGATTTAACCCAGATATAATTCCAGCACG
70682903 AAGCCTGCGGTA
66 AAGCCTGCGGTA
* *
70682915 TTTAA-CTCGGATATATTACCAGCACGAAGCCTGCGGGATTTAACCCAGATATAATTCCAGCA-T
1 TTTAAGCTCGGATATAATACCAGCACGAAGCCTGCGGGATTTAACCCAGATATAATTCCAGCACG
*
70682978 ATAGCCTGCGGGTC
66 A-AGCCTGC-GGTA
*
70682992 TTTAAGCCCGGATA
1 TTTAAGCTCGGATA
70683006 CACATCAAAT
Statistics
Matches: 82, Mismatches: 6, Indels: 5
0.88 0.06 0.05
Matches are distributed among these distances:
75 1 0.01
76 61 0.74
77 13 0.16
78 7 0.09
ACGTcount: A:0.29, C:0.24, G:0.21, T:0.25
Consensus pattern (77 bp):
TTTAAGCTCGGATATAATACCAGCACGAAGCCTGCGGGATTTAACCCAGATATAATTCCAGCACG
AAGCCTGCGGTA
Found at i:70686636 original size:38 final size:38
Alignment explanation
Indices: 70686591--70686750 Score: 214
Period size: 38 Copynumber: 4.2 Consensus size: 38
70686581 ACTTTAAGCT
*
70686591 CGGATATAATACCAGCACTAAGCCTGCGGGATTTAACC
1 CGGATATAATACCAGCACGAAGCCTGCGGGATTTAACC
* *
70686629 CGGATATAATACCAGCACGAAGCCTGTGGGATTTAACT
1 CGGATATAATACCAGCACGAAGCCTGCGGGATTTAACC
*
70686667 CGGATATATTACCAGCACGAAGCCTGCGGGATTTAACC
1 CGGATATAATACCAGCACGAAGCCTGCGGGATTTAACC
* * * *
70686705 CAGATATAATTCCAGCA-TATAGCCTGCGGGTCTTTAAGCC
1 CGGATATAATACCAGCACGA-AGCCTGCGGG-ATTTAA-CC
70686745 CGGATA
1 CGGATA
70686751 CACATCAAAT
Statistics
Matches: 107, Mismatches: 12, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
37 1 0.01
38 94 0.88
39 5 0.05
40 7 0.07
ACGTcount: A:0.30, C:0.24, G:0.23, T:0.23
Consensus pattern (38 bp):
CGGATATAATACCAGCACGAAGCCTGCGGGATTTAACC
Found at i:70686730 original size:76 final size:78
Alignment explanation
Indices: 70686561--70686721 Score: 245
Period size: 76 Copynumber: 2.1 Consensus size: 78
70686551 GAATCTAGTC
* * *
70686561 ACCAGCACAAAACCTGTGGAACTTTAAGCTCGGATATAATACCAGCACTAAGCCTGCGGGATTTA
1 ACCAGCACGAAGCCTGTGGAACTTTAAGCTCGGATATAATACCAGCACGAAGCCTGCGGGATTTA
*
70686626 ACCCGGATATAAT
66 ACCCAGATATAAT
* *
70686639 ACCAGCACGAAGCCTGTGGGA-TTTAA-CTCGGATATATTACCAGCACGAAGCCTGCGGGATTTA
1 ACCAGCACGAAGCCTGTGGAACTTTAAGCTCGGATATAATACCAGCACGAAGCCTGCGGGATTTA
70686702 ACCCAGATATAAT
66 ACCCAGATATAAT
*
70686715 TCCAGCA
1 ACCAGCA
70686722 TATAGCCTGC
Statistics
Matches: 76, Mismatches: 7, Indels: 2
0.89 0.08 0.02
Matches are distributed among these distances:
76 53 0.70
77 5 0.07
78 18 0.24
ACGTcount: A:0.33, C:0.25, G:0.20, T:0.22
Consensus pattern (78 bp):
ACCAGCACGAAGCCTGTGGAACTTTAAGCTCGGATATAATACCAGCACGAAGCCTGCGGGATTTA
ACCCAGATATAAT
Found at i:70690897 original size:45 final size:46
Alignment explanation
Indices: 70690789--70690955 Score: 169
Period size: 47 Copynumber: 3.5 Consensus size: 46
70690779 TTTGTGTGCT
*
70690789 AGTGTAAGACCATGTCTGGGACATGCATCGGCCACATTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGCATCGGCCACATGAT-AGAGCC
* * * * * *
70690836 AGTGTAAGATCATGTCTAGGATATGCATCGGCTACATGAT-GTGTC
1 AGTGTAAGACCATGTCTGGGACATGCATCGGCCACATGATAGAGCC
* *
70690881 AGTGTAAGACCATGTCTGGGACATGGCATC-GACACGGAT-ACGTGAGAGTC
1 AGTGTAAGACCATGTCTGGGACAT-GCATCGGCCAC--ATGA--T-AGAGCC
70690931 AGTGTAAGACCATGTCTGGGACATG
1 AGTGTAAGACCATGTCTGGGACATG
70690956 GCATTGACAT
Statistics
Matches: 100, Mismatches: 13, Indels: 12
0.80 0.10 0.10
Matches are distributed among these distances:
45 27 0.27
46 6 0.06
47 37 0.37
48 1 0.01
49 1 0.01
50 28 0.28
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (46 bp):
AGTGTAAGACCATGTCTGGGACATGCATCGGCCACATGATAGAGCC
Found at i:70690934 original size:50 final size:48
Alignment explanation
Indices: 70690789--70690964 Score: 161
Period size: 50 Copynumber: 3.7 Consensus size: 48
70690779 TTTGTGTGCT
* *
70690789 AGTGTAAGACCATGTCTGGGACATGCATCGGCCAC--ATTA-TGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGCATC-GACACGGA-TACTGAGAGTC
* * * * *
70690836 AGTGTAAGATCATGTCTAGGATATGCAT-----CGGCTACATGATGTGTC
1 AGTGTAAGACCATGTCTGGGACATGCATCGACACGGATAC-TGA-GAGTC
70690881 AGTGTAAGACCATGTCTGGGACATGGCATCGACACGGATACGTGAGAGTC
1 AGTGTAAGACCATGTCTGGGACAT-GCATCGACACGGATAC-TGAGAGTC
*
70690931 AGTGTAAGACCATGTCTGGGACATGGCATTGACA
1 AGTGTAAGACCATGTCTGGGACAT-GCATCGACA
70690965 TTATACCCTA
Statistics
Matches: 105, Mismatches: 13, Indels: 19
0.77 0.09 0.14
Matches are distributed among these distances:
41 1 0.01
42 2 0.02
44 3 0.03
45 24 0.23
46 4 0.04
47 25 0.24
50 37 0.35
51 9 0.09
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGCATCGACACGGATACTGAGAGTC
Found at i:70694465 original size:34 final size:35
Alignment explanation
Indices: 70694427--70694493 Score: 93
Period size: 34 Copynumber: 1.9 Consensus size: 35
70694417 ATTCTGTAGT
*
70694427 TAGGGTAATACTG-AAACTATAGAA-ACTGAGACAG
1 TAGGG-AAAACTGAAAACTATAGAAGACTGAGACAG
*
70694461 TAGGGAAAACTGAAAACTTTAGAAGACTGAGAC
1 TAGGGAAAACTGAAAACTATAGAAGACTGAGAC
70694494 TATAGCTAGG
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
33 6 0.21
34 15 0.52
35 8 0.28
ACGTcount: A:0.45, C:0.12, G:0.24, T:0.19
Consensus pattern (35 bp):
TAGGGAAAACTGAAAACTATAGAAGACTGAGACAG
Found at i:70697235 original size:65 final size:65
Alignment explanation
Indices: 70697124--70697254 Score: 235
Period size: 65 Copynumber: 2.0 Consensus size: 65
70697114 CCCCTAGGGT
** *
70697124 TAAGGTTGACCTGAATGCATGTTTGACTGTTACTATTTTTTGCATGCCATGTTATTATTATCTGA
1 TAAGGTTGACCTGAATGCATGTTTGACTGTTACTATTTACTACATGCCATGTTATTATTATCTGA
70697189 TAAGGTTGACCTGAATGCATGTTTGACTGTTACTATTTACTACATGCCATGTTATTATTATCTGA
1 TAAGGTTGACCTGAATGCATGTTTGACTGTTACTATTTACTACATGCCATGTTATTATTATCTGA
70697254 T
1 T
70697255 GTATGGGACT
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
65 63 1.00
ACGTcount: A:0.24, C:0.15, G:0.18, T:0.44
Consensus pattern (65 bp):
TAAGGTTGACCTGAATGCATGTTTGACTGTTACTATTTACTACATGCCATGTTATTATTATCTGA
Found at i:70703402 original size:26 final size:22
Alignment explanation
Indices: 70703373--70703420 Score: 60
Period size: 26 Copynumber: 2.0 Consensus size: 22
70703363 AGTTGTAAAG
70703373 AGAAAATTCTCTGAAAAGATTATTTT
1 AGAAAATT-TCT--AAAGA-TATTTT
70703399 AGAAAATTTCTAAAGATATTTT
1 AGAAAATTTCTAAAGATATTTT
70703421 TTATTTACAA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
22 6 0.27
23 5 0.23
25 3 0.14
26 8 0.36
ACGTcount: A:0.44, C:0.06, G:0.10, T:0.40
Consensus pattern (22 bp):
AGAAAATTTCTAAAGATATTTT
Found at i:70704725 original size:20 final size:21
Alignment explanation
Indices: 70704687--70704725 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
70704677 AAAGTTGAAG
* *
70704687 TAGTATTTTATGTTTTTTTTA
1 TAGTATTTTATGATATTTTTA
70704708 TAGT-TTTTATGATATTTT
1 TAGTATTTTATGATATTTT
70704726 CAAACTTAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 12 0.75
21 4 0.25
ACGTcount: A:0.21, C:0.00, G:0.10, T:0.69
Consensus pattern (21 bp):
TAGTATTTTATGATATTTTTA
Found at i:70709235 original size:27 final size:27
Alignment explanation
Indices: 70709205--70709263 Score: 82
Period size: 27 Copynumber: 2.2 Consensus size: 27
70709195 AAGAGCCTTC
* * *
70709205 CTTTTATATTTCGCGACAAAGGATTTT
1 CTTTCATATTTCACCACAAAGGATTTT
*
70709232 CTTTCATATTTCACCACAAAGGCTTTT
1 CTTTCATATTTCACCACAAAGGATTTT
70709259 CTTTC
1 CTTTC
70709264 TCGCCGTGTT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.24, C:0.22, G:0.10, T:0.44
Consensus pattern (27 bp):
CTTTCATATTTCACCACAAAGGATTTT
Found at i:70714054 original size:16 final size:16
Alignment explanation
Indices: 70714035--70714066 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
70714025 AATTGTTTTA
70714035 TTACAAAATTTCACTT
1 TTACAAAATTTCACTT
*
70714051 TTACATAATTTCACTT
1 TTACAAAATTTCACTT
70714067 ACTCCATTCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.34, C:0.19, G:0.00, T:0.47
Consensus pattern (16 bp):
TTACAAAATTTCACTT
Found at i:70714369 original size:50 final size:50
Alignment explanation
Indices: 70714283--70714661 Score: 345
Period size: 50 Copynumber: 7.5 Consensus size: 50
70714273 CGCATAGAAT
* * * *
70714283 CCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACATGTAGTAG
1 CCTGCACTTAGTACTACACATGTGACTTAACAATCTGGTACACGTAGTAG
* * *
70714333 CCTGCACTTTGTACTACACATGTGACTTAACCATCTGATACACGTAGTAG
1 CCTGCACTTAGTACTACACATGTGACTTAACAATCTGGTACACGTAGTAG
** * * * * * *
70714383 CCTGCACTTAGTACTACACACATTA-TCGAAGTTAA-CGGGTACGCATAGTAG
1 CCTGCACTTAGTACTACACATGTGACT-TAA--CAATCTGGTACACGTAGTAG
* * *
70714434 CCTGCACTTAGTA-TGACACATGCGACCTATCAATCTGGTACACGTAGTAG
1 CCTGCACTTAGTACT-ACACATGTGACTTAACAATCTGGTACACGTAGTAG
* * * * *
70714484 CCTACACTTAGTACTACATACGTGACTTAACCATCTGATACACGTAGTAG
1 CCTGCACTTAGTACTACACATGTGACTTAACAATCTGGTACACGTAGTAG
* * * * * * * *
70714534 TCTACACTTAGTACTACATATGTGA-TCGAAGTTAA-CGGGTACGCATAGTAG
1 CCTGCACTTAGTACTACACATGTGACT-TAA--CAATCTGGTACACGTAGTAG
* * *
70714585 CCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAG
1 CCTGCACTTAGTACTACACATGTGACTTAACAATCTGGTACACGTAGTAG
*
70714635 CCTGCACTTAGTACTACACACGTGACT
1 CCTGCACTTAGTACTACACATGTGACT
70714662 CACAATGAAT
Statistics
Matches: 257, Mismatches: 60, Indels: 24
0.75 0.18 0.07
Matches are distributed among these distances:
49 6 0.02
50 182 0.71
51 67 0.26
52 2 0.01
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (50 bp):
CCTGCACTTAGTACTACACATGTGACTTAACAATCTGGTACACGTAGTAG
Found at i:70714532 original size:151 final size:151
Alignment explanation
Indices: 70714270--70714661 Score: 651
Period size: 151 Copynumber: 2.6 Consensus size: 151
70714260 AAGCTCTCTA
* * *
70714270 GTACGCATAGAATCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACATGTAGTAGCC
1 GTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGCC
* * *
70714335 TGCACTTTGTACTACACATGTGACTTAACCATCTGATACACGTAGTAGCCTGCACTTAGTACTAC
66 TGCACTTAGTACTACACACGTGACTTAACCATCTGATACACGTAGTAGCCTACACTTAGTACTAC
*
70714400 ACACATTATCGAAGTTAACGG
131 ACACATGATCGAAGTTAACGG
70714421 GTACGCATAGTAGCCTGCACTTAGTA-TGACACATGCGACCTATCAATCTGGTACACGTAGTAGC
1 GTACGCATAGTAGCCTGCACTTAGTACT-ACACATGCGACCTATCAATCTGGTACACGTAGTAGC
* * *
70714485 CTACACTTAGTACTACATACGTGACTTAACCATCTGATACACGTAGTAGTCTACACTTAGTACTA
65 CTGCACTTAGTACTACACACGTGACTTAACCATCTGATACACGTAGTAGCCTACACTTAGTACTA
* **
70714550 CATATGTGATCGAAGTTAACGG
130 CACACATGATCGAAGTTAACGG
70714572 GTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGCC
1 GTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGCC
70714637 TGCACTTAGTACTACACACGTGACT
66 TGCACTTAGTACTACACACGTGACT
70714662 CACAATGAAT
Statistics
Matches: 224, Mismatches: 15, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
150 1 0.00
151 222 0.99
152 1 0.00
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (151 bp):
GTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGCC
TGCACTTAGTACTACACACGTGACTTAACCATCTGATACACGTAGTAGCCTACACTTAGTACTAC
ACACATGATCGAAGTTAACGG
Found at i:70714575 original size:101 final size:101
Alignment explanation
Indices: 70714470--70714652 Score: 258
Period size: 101 Copynumber: 1.8 Consensus size: 101
70714460 CTATCAATCT
* * * * * *
70714470 GGTACACGTAGTAGCCTACACTTAGTACTACATACGTGACTTAACCATCTGATACACGTAGTAGT
1 GGTACACATAGTAGCCTACACTTAGTACTACACACGCGACCTAACAATCTGATACACGTAGTAGC
70714535 CTACACTTAGTACTACATATGTGATCGAAGTTAACG
66 CTACACTTAGTACTACATATGTGATCGAAGTTAACG
* * * * *
70714571 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
1 GGTACACATAGTAGCCTACACTTAGTACTACACACGCGACCTAACAATCTGATACACGTAGTAGC
*
70714636 CTGCACTTAGTACTACA
66 CTACACTTAGTACTACA
70714653 CACGTGACTC
Statistics
Matches: 70, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
101 70 1.00
ACGTcount: A:0.30, C:0.24, G:0.19, T:0.27
Consensus pattern (101 bp):
GGTACACATAGTAGCCTACACTTAGTACTACACACGCGACCTAACAATCTGATACACGTAGTAGC
CTACACTTAGTACTACATATGTGATCGAAGTTAACG
Found at i:70715037 original size:19 final size:20
Alignment explanation
Indices: 70715009--70715055 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
70714999 AAGAACATGT
70715009 TATATCATCAAAATAATCACA
1 TATAT-ATCAAAATAATCACA
* *
70715030 TA-ATATCAAATTATTCACA
1 TATATATCAAAATAATCACA
70715049 TATATAT
1 TATATAT
70715056 AGTTATAATT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 15 0.65
20 6 0.26
21 2 0.09
ACGTcount: A:0.49, C:0.15, G:0.00, T:0.36
Consensus pattern (20 bp):
TATATATCAAAATAATCACA
Found at i:70725147 original size:48 final size:51
Alignment explanation
Indices: 70725025--70725295 Score: 197
Period size: 48 Copynumber: 5.6 Consensus size: 51
70725015 CAAAATGGAG
* *
70725025 GCCGATGCCATGTCCCAGACATGGTCTTACACT-AGCTCTAACATATCCGT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGAGCACTAACATATACGT
* * * *
70725075 GCTGATGCCATGTCCCAGATATGGTCTCACACTGA-CACT-TC-TATACGT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGAGCACTAACATATACGT
* * *
70725123 GCCGATGCCATGTCCTAGACATGGTCTTACACTG-GCTCT--CATA-ATGT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGAGCACTAACATATACGT
* * * **
70725170 AGCCAATG-CATGTCCCAGACAT-GTCTTGCACT-AGCTCTTGTC-TCA-A-G-
1 -GCCGATGCCATGTCCCAGACATGGTCTTACACTGAGCAC-TAACAT-ATACGT
* * * *
70725217 GCCGATGCCATGTACTAGACATGGTCTTACACT-AGCTCT--CATA-ATGT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGAGCACTAACATATACGT
70725264 GGCCGATG-CATGTCCCAGACAT-GTCTTACACT
1 -GCCGATGCCATGTCCCAGACATGGTCTTACACT
70725296 AGAACACAAA
Statistics
Matches: 185, Mismatches: 21, Indels: 34
0.77 0.09 0.14
Matches are distributed among these distances:
45 3 0.02
46 31 0.17
47 43 0.23
48 70 0.38
49 4 0.02
50 33 0.18
51 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (51 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGAGCACTAACATATACGT
Found at i:70725239 original size:94 final size:94
Alignment explanation
Indices: 70725023--70725297 Score: 315
Period size: 94 Copynumber: 2.9 Consensus size: 94
70725013 ATCAAAATGG
* * **
70725023 AGGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTAACAT-ATCCGT-GCTGATGCCAT
1 AGGCCGATGCCATGTACTAGACATGGTCTTACACTAGCTCT--CATAAT--GTAGCCAATG-CAT
* * * * *
70725086 GTCCCAGATATGGTCTCACACT-GACACTTCTAT-A
61 GTCCCAGACAT-GTCTTACACTAG-CTCTTGTCTCA
* * *
70725120 CGTGCCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCATAATGTAGCCAATGCATGTCC
1 AG-GCCGATGCCATGTACTAGACATGGTCTTACACTAGCTCTCATAATGTAGCCAATGCATGTCC
*
70725185 CAGACATGTCTTGCACTAGCTCTTGTCTCA
65 CAGACATGTCTTACACTAGCTCTTGTCTCA
* *
70725215 AGGCCGATGCCATGTACTAGACATGGTCTTACACTAGCTCTCATAATGTGGCCGATGCATGTCCC
1 AGGCCGATGCCATGTACTAGACATGGTCTTACACTAGCTCTCATAATGTAGCCAATGCATGTCCC
70725280 AGACATGTCTTACACTAG
66 AGACATGTCTTACACTAG
70725298 AACACAAATA
Statistics
Matches: 156, Mismatches: 17, Indels: 13
0.84 0.09 0.07
Matches are distributed among these distances:
94 90 0.58
95 18 0.12
96 8 0.05
97 3 0.02
98 37 0.24
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.28
Consensus pattern (94 bp):
AGGCCGATGCCATGTACTAGACATGGTCTTACACTAGCTCTCATAATGTAGCCAATGCATGTCCC
AGACATGTCTTACACTAGCTCTTGTCTCA
Found at i:70725269 original size:142 final size:146
Alignment explanation
Indices: 70724978--70725295 Score: 332
Period size: 147 Copynumber: 2.2 Consensus size: 146
70724968 TCTATCAAGT
* * * *
70724978 CGATGCCATGTTCTAGACATGGTATTACATTGACTATCAAAATGGAGGCCGATGCCATGTCCCAG
1 CGATGCCATGTCCTAGACATGGTCTTACACTGACTATCAAAATGGAGGCCAATGCCATGTCCCAG
* * * *
70725043 ACATGGTCTTACACTAGCTCTAACATATCCGTGCTGATGCCATGTCCCAGATATGGTCTCACACT
66 ACATGGTCTTACACTAGCTCT-ACATATCAGTGCCGATGCCATGTACCAGACATGGTCTCACACT
70725108 GACACTTCTATACGTGC
130 GACACTTCTATACGTGC
* * * *
70725125 CGATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCATAATGTA-GCCAATG-CATGTCCCAG
1 CGATGCCATGTCCTAGACATGGTCTTACACTGACTATCAAAATGGAGGCCAATGCCATGTCCCAG
* ** * * *
70725188 ACAT-GTCTTGCACTAGCTCT-TGTCTCAAG-GCCGATGCCATGTACTAGACATGGTCTTACACT
66 ACATGGTCTTACACTAGCTCTACATATC-AGTGCCGATGCCATGTACCAGACATGGTCTCACACT
* *
70725250 -A-GC-TCTCATAATGTGGC
130 GACACTTCT-AT-ACGT-GC
*
70725267 CGATG-CATGTCCCAGACAT-GTCTTACACT
1 CGATGCCATGTCCTAGACATGGTCTTACACT
70725296 AGAACACAAA
Statistics
Matches: 146, Mismatches: 21, Indels: 15
0.80 0.12 0.08
Matches are distributed among these distances:
139 3 0.02
140 13 0.09
141 17 0.12
142 38 0.26
143 1 0.01
144 15 0.10
145 14 0.10
146 6 0.04
147 39 0.27
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.28
Consensus pattern (146 bp):
CGATGCCATGTCCTAGACATGGTCTTACACTGACTATCAAAATGGAGGCCAATGCCATGTCCCAG
ACATGGTCTTACACTAGCTCTACATATCAGTGCCGATGCCATGTACCAGACATGGTCTCACACTG
ACACTTCTATACGTGC
Found at i:70727615 original size:43 final size:43
Alignment explanation
Indices: 70727554--70727636 Score: 157
Period size: 43 Copynumber: 1.9 Consensus size: 43
70727544 CTTGGTGTTC
*
70727554 GGCCTTCACTTGTTGACAAACTAGACACTTAGAAACAAACATA
1 GGCCTTCACTTGTTGACAAACTAGACACTTAAAAACAAACATA
70727597 GGCCTTCACTTGTTGACAAACTAGACACTTAAAAACAAAC
1 GGCCTTCACTTGTTGACAAACTAGACACTTAAAAACAAAC
70727637 TCGGAAATGT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
43 39 1.00
ACGTcount: A:0.40, C:0.24, G:0.13, T:0.23
Consensus pattern (43 bp):
GGCCTTCACTTGTTGACAAACTAGACACTTAAAAACAAACATA
Found at i:70731507 original size:20 final size:21
Alignment explanation
Indices: 70731482--70731521 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
70731472 CCCTTGAAAT
70731482 AGGGC-ACACGCCCATGTGGA
1 AGGGCAACACGCCCATGTGGA
* *
70731502 AGGGCAACATGCCCGTGTGG
1 AGGGCAACACGCCCATGTGG
70731522 TTTACTATGA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.23, C:0.28, G:0.38, T:0.12
Consensus pattern (21 bp):
AGGGCAACACGCCCATGTGGA
Found at i:70732878 original size:48 final size:48
Alignment explanation
Indices: 70732632--70733001 Score: 255
Period size: 47 Copynumber: 7.8 Consensus size: 48
70732622 AGGGTATAAT
* *
70732632 GCCGATGCCATGTCCCAGACATGGTCTTACACAGGCTCATCCATCAA-GT-
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTC-T-TAT-AATGTG
* * * * *
70732681 --CGATGCCATGTTCTAGACATGGTCTTACACTGACTATCTA-AATCGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCT-TATAAT-GTG
* * * * *
70732728 GCCGACGCCATGTCCCAGACATGGTGTTACACTAGCTCTAACATAT-TCG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTTATA-ATGT-G
* * * * *
70732777 TGCCGATGTCATGTCCCAGACATGGCCTTACACTGACACCTT-TATACGT-
1 -GCCGATGCCATGTCCCAGACATGGTCTTACACTGGC-TCTTATA-ATGTG
* * *
70732826 GTCGATGCCATGTCCTAGACAGGGTCTTACACTGGCTCTTATAATGTG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTTATAATGTG
* * * * ** *
70732874 GTCGATG-CATCTCACAGACAT-GTCTTACACTAGCTCTCGT-CTCGAT-
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTTATAAT-G-TG
* * *
70732920 GCCGATGCCATGTCCCAAACATGTTCTTACACTGGCTCTCATAATGTG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTTATAATGTG
*
70732968 GCTGATG-CATGTCCCAGACAT-GTCTTACACTGGC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGC
70733002 ACACAAATAA
Statistics
Matches: 249, Mismatches: 53, Indels: 41
0.73 0.15 0.12
Matches are distributed among these distances:
44 2 0.01
45 1 0.00
46 39 0.16
47 73 0.29
48 63 0.25
49 33 0.13
50 35 0.14
51 3 0.01
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (48 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTTATAATGTG
Found at i:70736253 original size:16 final size:16
Alignment explanation
Indices: 70736232--70736262 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
70736222 AAACACATAG
70736232 AGTAAGCTACAAAGAA
1 AGTAAGCTACAAAGAA
70736248 AGTAAGCTACAAAGA
1 AGTAAGCTACAAAGA
70736263 GCTTAGTAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.55, C:0.13, G:0.19, T:0.13
Consensus pattern (16 bp):
AGTAAGCTACAAAGAA
Found at i:70739406 original size:27 final size:27
Alignment explanation
Indices: 70739376--70739677 Score: 256
Period size: 27 Copynumber: 11.2 Consensus size: 27
70739366 ATTACCGTTT
* *
70739376 TACCCTCGATTAGCAAAATTACCAAAA
1 TACCCTCGATTTGTAAAATTACCAAAA
*
70739403 TACCC-CTGGTTTGTAAAATTACCAAAA
1 TACCCTC-GATTTGTAAAATTACCAAAA
*
70739430 TACCCT-TATTTGTAAAATTACCAAAA
1 TACCCTCGATTTGTAAAATTACCAAAA
* *
70739456 TACCC-CTAGTTTGTGAAATTACCAAAA
1 TACCCTCGA-TTTGTAAAATTACCAAAA
* **
70739483 TACCC-CTGATTTGTGAAATTACTGAAA
1 TACCCTC-GATTTGTAAAATTACCAAAA
*
70739510 TACCCTCGACTTGTAAAATTACCAAAA
1 TACCCTCGATTTGTAAAATTACCAAAA
* ** **
70739537 TACCCTTGGCTTACAAAATTACCAAAA
1 TACCCTCGATTTGTAAAATTACCAAAA
* **
70739564 TACCCTCGATTTGTGAAATTACTGAAA
1 TACCCTCGATTTGTAAAATTACCAAAA
* ** * *
70739591 TACCCT-TATAGGATAGAATTACCGAAA
1 TACCCTCGATTTG-TAAAATTACCAAAA
* * * * *
70739618 TACCATTG-TAGTGTGAAATTACTAAAA
1 TACCCTCGAT-TTGTAAAATTACCAAAA
*
70739645 TACCCTCGACTTGTAAAATTACCAAAA
1 TACCCTCGATTTGTAAAATTACCAAAA
70739672 TACCCT
1 TACCCT
70739678 TAGTTTACAA
Statistics
Matches: 220, Mismatches: 45, Indels: 20
0.77 0.16 0.07
Matches are distributed among these distances:
26 29 0.13
27 188 0.85
28 3 0.01
ACGTcount: A:0.39, C:0.22, G:0.10, T:0.29
Consensus pattern (27 bp):
TACCCTCGATTTGTAAAATTACCAAAA
Found at i:70739611 original size:81 final size:79
Alignment explanation
Indices: 70739383--70739701 Score: 284
Period size: 81 Copynumber: 3.9 Consensus size: 79
70739373 TTTTACCCTC
*
70739383 GATTAGCAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTATTTGTAAAAT
1 GATT-GCAAAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCCTTA-TTGTAAAAT
* *
70739448 TACCAAAATACCCCTA
64 TACCAAAATACCCTTG
* ** * ** *
70739464 GTTTGTGAAATTACCAAAATACCCCTGATTTGTGAAATTACTGAAATACCCTCGACTTGTAAAAT
1 GATTGCAAAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCCT-TA-TTGTAAAAT
70739529 TACCAAAATACCCTTG
64 TACCAAAATACCCTTG
* * * ** * *
70739545 GCTTACAAAATTACCAAAATA-CCCTCGATTTGTGAAATTACTGAAATACCCTTATAGGATAGAA
1 GATTGCAAAATTACCAAAATACCCCT-GATTTGTAAAATTACCAAAATACCCTTAT-TG-TAAAA
* *
70739609 TTACCGAAATACCATTG
63 TTACCAAAATACCCTTG
* * ** * *
70739626 TAGTGTGAAATTACTAAAATA-CCCTCGACTTGTAAAATTACCAAAATACCCTTAGTT-TACAAA
1 GATTGCAAAATTACCAAAATACCCCT-GATTTGTAAAATTACCAAAATACCCTTA-TTGT--AAA
*
70739689 ATTATCAAAATAC
62 ATTACCAAAATAC
70739702 ACCCAATTAG
Statistics
Matches: 196, Mismatches: 35, Indels: 14
0.80 0.14 0.06
Matches are distributed among these distances:
79 2 0.01
80 48 0.24
81 145 0.74
82 1 0.01
ACGTcount: A:0.40, C:0.20, G:0.10, T:0.29
Consensus pattern (79 bp):
GATTGCAAAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCCTTATTGTAAAATTA
CCAAAATACCCTTG
Found at i:70739745 original size:27 final size:27
Alignment explanation
Indices: 70739715--70739909 Score: 259
Period size: 27 Copynumber: 7.2 Consensus size: 27
70739705 CAATTAGTGA
*
70739715 AATTACTGAAATACCCCTGTAAGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * *
70739742 AATTACCGGAATACCCCTATAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
70739769 AATTA-TCGAAATACCCTTGTAGGGTAG
1 AATTACT-GAAATACCCCTGTAGGGTAG
* *
70739796 AATTACTAAAATACCCCCGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
70739823 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
70739850 AATTATTGAAATACCCCTGTAAGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
70739877 AATTAC-CAAGATACCCCTGTAGGGTAG
1 AATTACTGAA-ATACCCCTGTAGGGTAG
70739904 AATTAC
1 AATTAC
70739910 CATTTTGCCC
Statistics
Matches: 145, Mismatches: 20, Indels: 6
0.85 0.12 0.04
Matches are distributed among these distances:
26 2 0.01
27 142 0.98
28 1 0.01
ACGTcount: A:0.35, C:0.19, G:0.20, T:0.25
Consensus pattern (27 bp):
AATTACTGAAATACCCCTGTAGGGTAG
Found at i:70739746 original size:54 final size:53
Alignment explanation
Indices: 70739688--70739908 Score: 209
Period size: 54 Copynumber: 4.1 Consensus size: 53
70739678 TAGTTTACAA
* *
70739688 AATTATCAAAATACACCCAATTAGTG-A-AATTACTGAAATACCCCTGTAAGGTAG
1 AATTATCAAAATAC-CCC-A-TAGGGTAGAATTACTGAAATACCCCTGTAGGGTAG
* ** *
70739742 AATTACCGGAATACCCCTATAGGGTAGAATTA-TCGAAATACCCTTGTAGGGTAG
1 AATTATCAAAATACCCC-ATAGGGTAGAATTACT-GAAATACCCCTGTAGGGTAG
* *
70739796 AATTA-CTAAAATACCCCCGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
1 AATTATC-AAAATA-CCCCATAGGGTAGAATTACTGAAATACCCCTGTAGGGTAG
** * * *
70739850 AATTATTGAAATACCCCTGTAAGGTAGAATTAC-CAAGATACCCCTGTAGGGTAG
1 AATTATCAAAATACCCC-ATAGGGTAGAATTACTGAA-ATACCCCTGTAGGGTAG
70739904 AATTA
1 AATTA
70739909 CCATTTTGCC
Statistics
Matches: 142, Mismatches: 16, Indels: 18
0.81 0.09 0.10
Matches are distributed among these distances:
52 4 0.03
53 13 0.09
54 121 0.85
55 4 0.03
ACGTcount: A:0.37, C:0.19, G:0.19, T:0.25
Consensus pattern (53 bp):
AATTATCAAAATACCCCATAGGGTAGAATTACTGAAATACCCCTGTAGGGTAG
Found at i:70739773 original size:81 final size:81
Alignment explanation
Indices: 70739580--70739910 Score: 264
Period size: 81 Copynumber: 4.1 Consensus size: 81
70739570 CGATTTGTGA
* * * * * *
70739580 AATTACTGAAATACCCTTATAGGATAGAATTACCGAAATA-CCATTGTAGTGT-GAAATTACTAA
1 AATTACCGAAATACCCCTATAGGGTAGAATTATCAAAATACCCA-TGTAGGGTAG-AATTACTAA
* ** *
70739643 AATACCCTCG-ACTTGTAA
64 AATACCCCCGTA-AGGTAG
* ** * *
70739661 AATTACCAAAATA-CCCT-TAGTTTACAAAATTATCAAAATACACCCAAT-TAGTG-A-AATTAC
1 AATTACCGAAATACCCCTATAGGGT--AGAATTATCAAAAT--ACCC-ATGTAGGGTAGAATTAC
* *
70739721 TGAAATACCCCTGTAAGGTAG
61 TAAAATACCCCCGTAAGGTAG
* * *
70739742 AATTACCGGAATACCCCTATAGGGTAGAATTATCGAAATACCCTTGTAGGGTAGAATTACTAAAA
1 AATTACCGAAATACCCCTATAGGGTAGAATTATCAAAATACCCATGTAGGGTAGAATTACTAAAA
*
70739807 TACCCCCGTAGGGTAG
66 TACCCCCGTAAGGTAG
* ** * * * *
70739823 AATTACCGAAATACCCCTGTAGGGTAGAATTATTGAAATACCCCTGTAAGGTAGAATTACCAAGA
1 AATTACCGAAATACCCCTATAGGGTAGAATTATCAAAATACCCATGTAGGGTAGAATTACTAAAA
* *
70739888 TACCCCTGTAGGGTAG
66 TACCCCCGTAAGGTAG
70739904 AATTACC
1 AATTACC
70739911 ATTTTGCCCC
Statistics
Matches: 204, Mismatches: 33, Indels: 26
0.78 0.13 0.10
Matches are distributed among these distances:
78 1 0.00
79 12 0.06
80 4 0.02
81 168 0.82
82 5 0.02
83 10 0.05
84 3 0.01
85 1 0.00
ACGTcount: A:0.38, C:0.19, G:0.16, T:0.27
Consensus pattern (81 bp):
AATTACCGAAATACCCCTATAGGGTAGAATTATCAAAATACCCATGTAGGGTAGAATTACTAAAA
TACCCCCGTAAGGTAG
Found at i:70740073 original size:16 final size:16
Alignment explanation
Indices: 70740052--70740082 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
70740042 CAAATATGGG
*
70740052 CATGACATTCTGCATA
1 CATGACATGCTGCATA
70740068 CATGACATGCTGCAT
1 CATGACATGCTGCAT
70740083 GGGTTGGGTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.29
Consensus pattern (16 bp):
CATGACATGCTGCATA
Found at i:70740151 original size:25 final size:25
Alignment explanation
Indices: 70740113--70740182 Score: 113
Period size: 25 Copynumber: 2.8 Consensus size: 25
70740103 AGGAAGTGCT
* *
70740113 AAAAGGGCTATGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCA
*
70740138 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
70740163 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
70740183 ATTAAAAGAG
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 42 1.00
ACGTcount: A:0.27, C:0.26, G:0.23, T:0.24
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCA
Found at i:70740195 original size:24 final size:24
Alignment explanation
Indices: 70740112--70740207 Score: 95
Period size: 25 Copynumber: 3.9 Consensus size: 24
70740102 GAGGAAGTGC
*
70740112 TAAAAGGGCTATGCCCCAGTTTACC
1 TAAAAGGGCTATGCCCCAGTTTA-T
* *
70740137 GAAAAGGGCTTTGCCCCAGTTTAT
1 TAAAAGGGCTATGCCCCAGTTTAT
* *
70740161 CAAAAAGGGCTTTGCCCCAG-TTAT
1 -TAAAAGGGCTATGCCCCAGTTTAT
*
70740185 TAAAAGAGGCTAGGCCTCCAGTT
1 TAAAAG-GGCTATGCC-CCAGTT
70740208 ATATGATAAA
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
23 5 0.08
24 11 0.18
25 43 0.72
26 1 0.02
ACGTcount: A:0.28, C:0.24, G:0.23, T:0.25
Consensus pattern (24 bp):
TAAAAGGGCTATGCCCCAGTTTAT
Found at i:70740206 original size:50 final size:50
Alignment explanation
Indices: 70740113--70740207 Score: 113
Period size: 50 Copynumber: 1.9 Consensus size: 50
70740103 AGGAAGTGCT
**
70740113 AAAAGGGCTATGCCCCAGTTTACCGAAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTATGCCCCAGTTTACCGAAAAGGGCTAGGCCCCAGTTTATCA
* **
70740163 AAAAGGGCTTTGCCCCAG-TTA-TTAAAAGAGGCTAGGCCTCCAGTT
1 AAAAGGGCTATGCCCCAGTTTACCGAAAAG-GGCTAGGCC-CCAGTT
70740208 ATATGATAAA
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
48 5 0.13
49 10 0.26
50 23 0.61
ACGTcount: A:0.28, C:0.24, G:0.23, T:0.24
Consensus pattern (50 bp):
AAAAGGGCTATGCCCCAGTTTACCGAAAAGGGCTAGGCCCCAGTTTATCA
Found at i:70742489 original size:27 final size:26
Alignment explanation
Indices: 70742459--70742775 Score: 166
Period size: 27 Copynumber: 11.8 Consensus size: 26
70742449 CTCGATTAAC
70742459 AAAATTACCAAAATACCCCTATTTTGT
1 AAAATTACCAAAATACCCCTA-TTTGT
*
70742486 AAAACTACCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCCTA-TTTGT
* *
70742513 GAAATTACCAAAATGCCCCTGATTTGT
1 AAAATTACCAAAATACCCCT-ATTTGT
* ** * * *
70742540 GAAATTACTGAAATACCATCGACTTGT
1 AAAATTACCAAAATACC-CCTATTTGT
*
70742567 AAAATTACCAAAATACCCCCGATTTGT
1 AAAATTACCAAAATA-CCCCTATTTGT
* * ** * **
70742594 GAAACTACTGAAATACCCTTATAGGGT
1 AAAATTACCAAAATACCCCTAT-TTGT
* ** * * * *
70742621 AGAATTACTGAAATATCCTTGTAGTGT
1 AAAATTACCAAAATACCCCTAT-TTGT
* ** * *
70742648 GAAATTACTGAAATACCCTCGACTTGT
1 AAAATTACCAAAATACCC-CTATTTGT
* * **
70742675 AAAATTACCAAAATACCCTTGGTTTAC
1 AAAATTACCAAAATACCCCT-ATTTGT
*
70742702 AAAATTACCAAAATACCCCTGATTAGT
1 AAAATTACCAAAATACCCCT-ATTTGT
* ** * **
70742729 GAAATTACTGAAATACCCCTGTAGGGT
1 AAAATTACCAAAATACCCCTAT-TTGT
*
70742756 AGAATTACCAAAATACCCCT
1 AAAATTACCAAAATACCCCT
70742776 GTAGGGTAGA
Statistics
Matches: 221, Mismatches: 62, Indels: 14
0.74 0.21 0.05
Matches are distributed among these distances:
26 6 0.03
27 211 0.95
28 4 0.02
ACGTcount: A:0.38, C:0.21, G:0.12, T:0.28
Consensus pattern (26 bp):
AAAATTACCAAAATACCCCTATTTGT
Found at i:70742593 original size:108 final size:108
Alignment explanation
Indices: 70742459--70742752 Score: 310
Period size: 108 Copynumber: 2.7 Consensus size: 108
70742449 CTCGATTAAC
* *
70742459 AAAATTACCAAAATA-CCCCTATTTTGTAAAACTACCAAAATACCCCTAGTTTGTGAAATTACCA
1 AAAATTACCAAAATACCCCCGA-TTTGTAAAACTACCAAAATACCCCTAGTTAGTGAAATTACCA
* *
70742523 AAATGCCCCTG-ATTTGTGAAATTACTGAAATACCATCGACTTGT
65 AAATACCCCTGTA-GTGTGAAATTACTGAAATACCATCGACTTGT
* ** * * *
70742567 AAAATTACCAAAATACCCCCGATTTGTGAAACTACTGAAATACCCTTA--TAGGGTAGAATTACT
1 AAAATTACCAAAATACCCCCGATTTGTAAAACTACCAAAATACCCCTAGTTAGTG-A-AATTACC
* * * *
70742630 GAAATATCCTTGTAGTGTGAAATTACTGAAATACCCTCGACTTGT
64 AAAATACCCCTGTAGTGTGAAATTACTGAAATACCATCGACTTGT
** * ** * **
70742675 AAAATTACCAAAATACCCTTGGTTTACAAAATTACCAAAATACCCCT-GATTAGTGAAATTACTG
1 AAAATTACCAAAATACCCCCGATTTGTAAAACTACCAAAATACCCCTAG-TTAGTGAAATTACCA
70742739 AAATACCCCTGTAG
65 AAATACCCCTGTAG
70742753 GGTAGAATTA
Statistics
Matches: 152, Mismatches: 27, Indels: 14
0.79 0.14 0.07
Matches are distributed among these distances:
106 3 0.02
107 1 0.01
108 137 0.90
109 7 0.05
110 4 0.03
ACGTcount: A:0.38, C:0.21, G:0.12, T:0.29
Consensus pattern (108 bp):
AAAATTACCAAAATACCCCCGATTTGTAAAACTACCAAAATACCCCTAGTTAGTGAAATTACCAA
AATACCCCTGTAGTGTGAAATTACTGAAATACCATCGACTTGT
Found at i:70742709 original size:54 final size:54
Alignment explanation
Indices: 70742459--70742692 Score: 217
Period size: 54 Copynumber: 4.3 Consensus size: 54
70742449 CTCGATTAAC
* * ** * *
70742459 AAAATTACCAAAATACCCCT-ATTTTGTAAAACTACCAAAATACCC-CTAGTTTGT
1 AAAATTACCAAAATACCCCTGA-TTTGTGAAATTACTGAAATACCCTCGA-CTTGT
* * *
70742513 GAAATTACCAAAATGCCCCTGATTTGTGAAATTACTGAAATACCATCGACTTGT
1 AAAATTACCAAAATACCCCTGATTTGTGAAATTACTGAAATACCCTCGACTTGT
* * * *
70742567 AAAATTACCAAAATACCCCCGATTTGTGAAACTACTGAAATACCCT-TA-TAGGGT
1 AAAATTACCAAAATACCCCTGATTTGTGAAATTACTGAAATACCCTCGACT--TGT
* ** * * *
70742621 AGAATTACTGAAATATCCTTG-TAGTGTGAAATTACTGAAATACCCTCGACTTGT
1 AAAATTACCAAAATACCCCTGAT-TTGTGAAATTACTGAAATACCCTCGACTTGT
70742675 AAAATTACCAAAATACCC
1 AAAATTACCAAAATACCC
70742693 TTGGTTTACA
Statistics
Matches: 143, Mismatches: 30, Indels: 14
0.76 0.16 0.07
Matches are distributed among these distances:
52 1 0.01
53 2 0.01
54 135 0.94
55 4 0.03
56 1 0.01
ACGTcount: A:0.38, C:0.21, G:0.12, T:0.29
Consensus pattern (54 bp):
AAAATTACCAAAATACCCCTGATTTGTGAAATTACTGAAATACCCTCGACTTGT
Found at i:70742762 original size:81 final size:78
Alignment explanation
Indices: 70742604--70742927 Score: 242
Period size: 81 Copynumber: 4.0 Consensus size: 78
70742594 GAAACTACTG
* * ** * *
70742604 AAATACCCTTATAGGGTAGAATTACTGAAATATCCTTGTAGTGTGAAATTACTGAAATA-CCCTC
1 AAATACCC-TGTAGGGTAAAATTACCAAAATACCCCTGTA--GTGAAATTACTGAAATACCCCT-
** *
70742668 G-ACTTGTAAAATTACCA
62 GTA-GGGTAGAATTACCA
*
70742685 AAATACCCT-T-GGTTTACAAAATTACCAAAATACCCCTGATTAGTGAAATTACTGAAATACCCC
1 AAATACCCTGTAGG-GT--AAAATTACCAAAATACCCCTG--TAGTGAAATTACTGAAATACCCC
70742748 TGTAGGGTAGAATTACCA
61 TGTAGGGTAGAATTACCA
* * * * *
70742766 AAATACCCCTGTAGGGTAGAATTATCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTG
1 AAATA-CCCTGTAGGGTAAAATTACCAAAATACCCCTGTAGTG-A-AATTACTGAAATACCCCTG
*
70742831 TAGGGTAGAATTACCG
63 TAGGGTAGAATTACCA
* * ** * * * *
70742847 AAATACCCCTATAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTACCGAGATACCCTTG
1 AAATA-CCCTGTAGGGTAAAATTACCAAAATACCCCTGTAGTG-A-AATTACTGAAATACCCCTG
* *
70742912 TGGGGTAAAATTACCA
63 TAGGGTAGAATTACCA
70742928 TTTTTCCCCT
Statistics
Matches: 207, Mismatches: 24, Indels: 24
0.81 0.09 0.09
Matches are distributed among these distances:
78 2 0.01
79 6 0.03
80 2 0.01
81 182 0.88
82 9 0.04
83 4 0.02
84 2 0.01
ACGTcount: A:0.36, C:0.20, G:0.18, T:0.27
Consensus pattern (78 bp):
AAATACCCTGTAGGGTAAAATTACCAAAATACCCCTGTAGTGAAATTACTGAAATACCCCTGTAG
GGTAGAATTACCA
Found at i:70742776 original size:27 final size:27
Alignment explanation
Indices: 70742704--70742926 Score: 315
Period size: 27 Copynumber: 8.3 Consensus size: 27
70742694 TGGTTTACAA
* *
70742704 AATTACCAAAATACCCCTGATTAGTG-A-
1 AATTACCGAAATACCCCTG--TAGGGTAG
*
70742731 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
70742758 AATTACCAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
70742785 AATTATCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
70742812 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
70742839 AATTACCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
70742866 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
70742893 AATTACCGAGATACCCTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
70742920 AATTACC
1 AATTACC
70742927 ATTTTTCCCC
Statistics
Matches: 178, Mismatches: 16, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
25 4 0.02
26 1 0.01
27 173 0.97
ACGTcount: A:0.35, C:0.21, G:0.20, T:0.25
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:70743162 original size:25 final size:25
Alignment explanation
Indices: 70743129--70743198 Score: 122
Period size: 25 Copynumber: 2.8 Consensus size: 25
70743119 AGGAAGTGCT
*
70743129 AAAAGGGCTATGCCCCAGTTTACCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
*
70743154 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
70743179 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
70743199 ATTAAAAGAG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 43 1.00
ACGTcount: A:0.29, C:0.26, G:0.21, T:0.24
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCA
Found at i:70743211 original size:24 final size:25
Alignment explanation
Indices: 70743129--70743223 Score: 113
Period size: 25 Copynumber: 3.8 Consensus size: 25
70743119 AGGAAGTGCT
*
70743129 AAAAGGGCTATGCCCCAGTTTACCA
1 AAAAGGGCTATGCCCCAGTTTATCA
*
70743154 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTATGCCCCAGTTTATCA
* *
70743179 AAAAGGGCTTTGCCCCAG-TTAT-T
1 AAAAGGGCTATGCCCCAGTTTATCA
*
70743202 AAAAGAGGCTAGGCCTCCAGTT
1 AAAAG-GGCTATGCC-CCAGTT
70743224 ATATGATAAA
Statistics
Matches: 62, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
23 5 0.08
24 11 0.18
25 45 0.73
26 1 0.02
ACGTcount: A:0.29, C:0.24, G:0.22, T:0.24
Consensus pattern (25 bp):
AAAAGGGCTATGCCCCAGTTTATCA
Found at i:70748000 original size:13 final size:13
Alignment explanation
Indices: 70747980--70748025 Score: 56
Period size: 13 Copynumber: 3.5 Consensus size: 13
70747970 CTAGGGACGG
70747980 GCGTGTGCCCTGA
1 GCGTGTGCCCTGA
* *
70747993 GTGTGTGCCCTGG
1 GCGTGTGCCCTGA
* *
70748006 GCGTGTGCCTTGG
1 GCGTGTGCCCTGA
70748019 GCGTGTG
1 GCGTGTG
70748026 AAGTCTGCAC
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
13 29 1.00
ACGTcount: A:0.02, C:0.24, G:0.46, T:0.28
Consensus pattern (13 bp):
GCGTGTGCCCTGA
Found at i:70771185 original size:15 final size:16
Alignment explanation
Indices: 70771165--70771203 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 16
70771155 AATTAGAAAG
70771165 ATGAAAAGTT-ATTAA
1 ATGAAAAGTTAATTAA
*
70771180 ATGAAAAATTAATTAA
1 ATGAAAAGTTAATTAA
70771196 ATGAAAAG
1 ATGAAAAG
70771204 GAAAACAATT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 9 0.43
16 12 0.57
ACGTcount: A:0.59, C:0.00, G:0.13, T:0.28
Consensus pattern (16 bp):
ATGAAAAGTTAATTAA
Found at i:70773559 original size:42 final size:42
Alignment explanation
Indices: 70773481--70773643 Score: 147
Period size: 42 Copynumber: 3.8 Consensus size: 42
70773471 CAATTCCAAC
* * * *
70773481 GTCCCAGAC-GTGTCTTACATGTAATCAAATATCGATGCCACT
1 GTCCCAGACAGGGTCTTACACGAAATCATATATCGATGCCA-T
70773523 GTCCCAGACAGGGTCTTACACGAAATCATATA-CGATGCCGAT
1 GTCCCAGACAGGGTCTTACACGAAATCATATATCGATGCC-AT
* * *
70773565 GTCCCAGACATGATCTTACACGTAAATC-TCAAATCGATGCCAAT
1 GTCCCAGACAGGGTCTTACACG-AAATCAT-ATATCGATGCC-AT
* *
70773609 GTCCCAGA-TGTGGTCTTACACAAAATC-TCATATCG
1 GTCCCAGACAG-GGTCTTACACGAAATCAT-ATATCG
70773644 GAATCCTATG
Statistics
Matches: 102, Mismatches: 13, Indels: 11
0.81 0.10 0.09
Matches are distributed among these distances:
42 38 0.37
43 38 0.37
44 26 0.25
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (42 bp):
GTCCCAGACAGGGTCTTACACGAAATCATATATCGATGCCAT
Found at i:70774914 original size:15 final size:15
Alignment explanation
Indices: 70774894--70774924 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
70774884 TTTTACAACA
70774894 CTTAGGAAAAATTTT
1 CTTAGGAAAAATTTT
70774909 CTTAGGAAAAATTTT
1 CTTAGGAAAAATTTT
70774924 C
1 C
70774925 CCAAGTTGGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.39, C:0.10, G:0.13, T:0.39
Consensus pattern (15 bp):
CTTAGGAAAAATTTT
Found at i:70781938 original size:24 final size:23
Alignment explanation
Indices: 70781893--70782005 Score: 83
Period size: 23 Copynumber: 4.8 Consensus size: 23
70781883 AAGCTCCTCC
*
70781893 TGAGCTGATGAATAGTAAGCTCTAT
1 TGAGCTGA-AAAT-GTAAGCTCTAT
70781918 TGAGCTGAAAATGGTAAGCTCTAT
1 TGAGCTGAAAAT-GTAAGCTCTAT
*
70781942 TGAGCT-AAACA-GTAAGCTCTTT
1 TGAGCTGAAA-ATGTAAGCTCTAT
* * *
70781964 TAAGCTGAATCA-GTAAGCT-TCAA
1 TGAGCTGAA-AATGTAAGCTCT-AT
70781987 TGAGCTG-AAATAGTAAGCT
1 TGAGCTGAAAAT-GTAAGCT
70782006 TTTACAAGCT
Statistics
Matches: 73, Mismatches: 9, Indels: 14
0.76 0.09 0.15
Matches are distributed among these distances:
21 1 0.01
22 17 0.23
23 26 0.36
24 21 0.29
25 8 0.11
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.29
Consensus pattern (23 bp):
TGAGCTGAAAATGTAAGCTCTAT
Found at i:70782002 original size:46 final size:46
Alignment explanation
Indices: 70781893--70782005 Score: 115
Period size: 46 Copynumber: 2.4 Consensus size: 46
70781883 AAGCTCCTCC
* * *
70781893 TGAGCTGATGAATAGTAAGCTCTATTGAGCTGAAAATGGTAAGCTCTAT
1 TGAGCTGA--AATAGTAAGCTCTATTAAGCTG-AAATAGTAAGCTCTAA
* *
70781942 TGAGCT-AAACAGTAAGCTCTTTTAAGCTG-AATCAGTAAGCT-TCAA
1 TGAGCTGAAATAGTAAGCTCTATTAAGCTGAAAT-AGTAAGCTCT-AA
70781987 TGAGCTGAAATAGTAAGCT
1 TGAGCTGAAATAGTAAGCT
70782006 TTTACAAGCT
Statistics
Matches: 55, Mismatches: 6, Indels: 9
0.79 0.09 0.13
Matches are distributed among these distances:
44 4 0.07
45 14 0.25
46 30 0.55
48 1 0.02
49 6 0.11
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.29
Consensus pattern (46 bp):
TGAGCTGAAATAGTAAGCTCTATTAAGCTGAAATAGTAAGCTCTAA
Found at i:70800559 original size:3 final size:3
Alignment explanation
Indices: 70800551--70800577 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
70800541 AATATAAAGT
70800551 TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA
70800578 AGGAAAAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:70800640 original size:15 final size:16
Alignment explanation
Indices: 70800614--70800647 Score: 61
Period size: 15 Copynumber: 2.2 Consensus size: 16
70800604 ATCTAAATTA
70800614 AAAAAAGAAAAGAAAG
1 AAAAAAGAAAAGAAAG
70800630 AAAAAAG-AAAGAAAG
1 AAAAAAGAAAAGAAAG
70800645 AAA
1 AAA
70800648 GGGAGAAGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 11 0.61
16 7 0.39
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (16 bp):
AAAAAAGAAAAGAAAG
Found at i:70802336 original size:29 final size:29
Alignment explanation
Indices: 70802273--70802340 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
70802263 TAATCAACCG
70802273 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
70802302 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
70802331 CGCACACTTA
1 CGCACACTTA
70802341 CCTTTTCCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:70802510 original size:29 final size:29
Alignment explanation
Indices: 70802447--70802514 Score: 84
Period size: 29 Copynumber: 2.3 Consensus size: 29
70802437 TAATCAACCG
*
70802447 CGCACACTTAGTGCCATGTACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
70802476 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
70802505 CGCACACTTA
1 CGCACACTTA
70802515 CCTTTTCCGC
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
28 3 0.09
29 30 0.91
ACGTcount: A:0.28, C:0.29, G:0.13, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:70802656 original size:29 final size:30
Alignment explanation
Indices: 70802622--70802693 Score: 96
Period size: 29 Copynumber: 2.5 Consensus size: 30
70802612 ATCAACCGCG
*
70802622 CACACTTAGTGCCATGTAC-TTTAAACTCA
1 CACACTTAGTGCCATGTACATTTAAACCCA
*
70802651 CACACTTAGTG-C-TGTACAATTTAAACCCG
1 CACACTTAGTGCCATGTAC-ATTTAAACCCA
70802680 CACACTTAGTGCCA
1 CACACTTAGTGCCA
70802694 ATCTCATGAC
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
27 5 0.14
28 1 0.03
29 30 0.81
30 1 0.03
ACGTcount: A:0.31, C:0.29, G:0.12, T:0.28
Consensus pattern (30 bp):
CACACTTAGTGCCATGTACATTTAAACCCA
Found at i:70802687 original size:173 final size:174
Alignment explanation
Indices: 70802162--70802662 Score: 941
Period size: 174 Copynumber: 2.9 Consensus size: 174
70802152 AACTCAAGGT
* *
70802162 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
* *
70802227 GAAAATATATTTTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
70802292 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
70802336 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
70802401 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
70802466 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
*
70802510 ACTTACCTTTTCCGCTGTCCAAAATCAACTCGGTAAAGTCGCACCC-TAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
*
70802574 GAAAATATATATTGAGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
70802639 ACTTTAAACTCACACACTTAGTGC
131 ACTTTAAACTCACACACTTAGTGC
70802663 TGTACAATTT
Statistics
Matches: 321, Mismatches: 6, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
173 106 0.33
174 215 0.67
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.30
Consensus pattern (174 bp):
ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
Found at i:70810645 original size:29 final size:29
Alignment explanation
Indices: 70810582--70810649 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
70810572 TAATCAACCG
70810582 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
70810611 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
70810640 CGCACACTTA
1 CGCACACTTA
70810650 CCTTTTCCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:70810762 original size:174 final size:174
Alignment explanation
Indices: 70810471--70810798 Score: 584
Period size: 174 Copynumber: 1.9 Consensus size: 174
70810461 AACTCAAGGT
* *
70810471 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
* *
70810536 GAAAATATATATTGGGTTCGCACACATAGTGCTTGATAATCAACCGCGCACACTTAGTGCCATGC
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGC
70810601 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
* *
70810645 ACTTACCTTTTCCGCTGTCCAAAATCGACTTGGTAAGGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
*
70810710 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGC
*
70810775 ACTTTAAACTCGCACACTTAGTGC
131 ACTTTAAACTCACACACTTAGTGC
70810799 TGTACAATTT
Statistics
Matches: 146, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
174 146 1.00
ACGTcount: A:0.30, C:0.24, G:0.15, T:0.30
Consensus pattern (174 bp):
ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGC
ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
Found at i:70810790 original size:29 final size:30
Alignment explanation
Indices: 70810751--70810829 Score: 110
Period size: 29 Copynumber: 2.7 Consensus size: 30
70810741 CTTAATAATC
70810751 AACCACGCACACTTAGTGCCATGTAC-TTTA
1 AACC-CGCACACTTAGTGCCATGTACATTTA
*
70810781 AACTCGCACACTTAGTG-C-TGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATTTA
70810810 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
70810830 ATCTCATGAC
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 33 0.77
30 4 0.09
ACGTcount: A:0.30, C:0.30, G:0.14, T:0.25
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATTTA
Found at i:70815116 original size:21 final size:22
Alignment explanation
Indices: 70815076--70815116 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
70815066 TTCTAAATAA
* *
70815076 AACATTATATCATTTCTAATTC
1 AACATTATATCAATTATAATTC
70815098 AACATT-TATCAATTATAAT
1 AACATTATATCAATTATAAT
70815117 CGGGCATGTG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 11 0.65
22 6 0.35
ACGTcount: A:0.41, C:0.15, G:0.00, T:0.44
Consensus pattern (22 bp):
AACATTATATCAATTATAATTC
Found at i:70816358 original size:15 final size:16
Alignment explanation
Indices: 70816331--70816360 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
70816321 AGATATTCCA
70816331 ATTTAGTCCCATTTTT
1 ATTTAGTCCCATTTTT
70816347 ATTTAG-CCCATTTT
1 ATTTAGTCCCATTTT
70816361 GGCAATTTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.20, C:0.20, G:0.07, T:0.53
Consensus pattern (16 bp):
ATTTAGTCCCATTTTT
Found at i:70820713 original size:18 final size:20
Alignment explanation
Indices: 70820676--70820713 Score: 53
Period size: 18 Copynumber: 2.0 Consensus size: 20
70820666 ATAAGCAAAG
*
70820676 TTTAGTGTGAAAATTGAAAT
1 TTTAGTGTGAAAACTGAAAT
70820696 TTTA-TGTG-AAACTGAAAT
1 TTTAGTGTGAAAACTGAAAT
70820714 GTGTAATATT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 9 0.53
19 4 0.24
20 4 0.24
ACGTcount: A:0.39, C:0.03, G:0.18, T:0.39
Consensus pattern (20 bp):
TTTAGTGTGAAAACTGAAAT
Found at i:70826861 original size:39 final size:40
Alignment explanation
Indices: 70826761--70826945 Score: 209
Period size: 40 Copynumber: 4.7 Consensus size: 40
70826751 TCGAATGATG
* * *
70826761 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
*
70826800 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* * *
70826841 TCTGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
70826880 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
70826919 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
70826946 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
39 35 0.28
40 79 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:70826967 original size:79 final size:79
Alignment explanation
Indices: 70826814--70826978 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
70826804 GGACTAAGAT
* * **
70826814 CCGAAGGCATTTGTGCGAGTTACTAATTCTGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
70826879 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
70826893 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
70826956 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
70826972 CCGAAGG
1 CCGAAGG
70826979 TACGTGATTC
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.65
80 24 0.32
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:70829667 original size:46 final size:49
Alignment explanation
Indices: 70829425--70829787 Score: 293
Period size: 46 Copynumber: 7.7 Consensus size: 49
70829415 AGGGTATAAT
* * *
70829425 GTCGATGCCATGTCCCAAACATGGTCTTACATTGGCTCATCCATC-A-A-
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTC-TACATCTAGAG
** * *
70829472 GTCGATGCCATGTCCCAGACATGGTCTTACACTAACTATTGAAAT-T-GAG
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTGGCT-CT-ACATCTAGAG
* * * * * * *
70829521 GCCGACGGCATGTCCCAGACATGGTCTTACACTAGCTCTCACATATCCGTG
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCT-ACATCT-AGAG
* * *
70829572 CT-GATGCCATGTCCCAGACATGGTCTTACACT-G-AC-ACATCTCGTA-
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTACATCTAG-AG
70829617 GTCGATG-CATGTCCCAGACAT-GTCTTACACTGGCT-TACATCTAGAG
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTACATCTAGAG
* * *
70829663 GTCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCT-CGTCTCA-AT
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTACATCT-AGAG
* *
70829709 G-CTGATGCCATGTCCCAGACATGGTCTTACACTGGCTCT-CATAATA-TG
1 GTC-GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTACAT-CTAGAG
70829757 GTCGATG-CATGTCCCAGACAT-GTCTTACACT
1 GTCGATGCCATGTCCCAGACATGGTCTTACACT
70829788 AGCACACAAA
Statistics
Matches: 262, Mismatches: 33, Indels: 43
0.78 0.10 0.13
Matches are distributed among these distances:
44 10 0.04
45 20 0.08
46 70 0.27
47 64 0.24
48 31 0.12
49 37 0.14
50 28 0.11
51 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.28
Consensus pattern (49 bp):
GTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTACATCTAGAG
Found at i:70829736 original size:94 final size:94
Alignment explanation
Indices: 70829421--70829790 Score: 329
Period size: 94 Copynumber: 3.9 Consensus size: 94
70829411 ACATAGGGTA
* * * *
70829421 TAATGTCGATGCCATGTCCCAAACATGGTCTTACATTGGCTCATCCAT-CAA-GTCGATGCCATG
1 TAATG-CGATGCCATGTCCCAGACATGGTCTTACACTGGCTC-TACATATAAGGTCGATGCCATG
* * *
70829484 TCCCAGACATGGTCTTACACTAACTATTGAAAT-
64 TCCCAGACATGGTCTTACACTAGCTCTCG---TC
* * * * * **
70829517 TGAGGCCGACGGCATGTCCCAGACATGGTCTTACACTAGCTCTCACATAT-CCGTGCTGATGCCA
1 TAATG-CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCT-ACATATAAGGT-C-GATGCCA
*
70829581 TGTCCCAGACATGGTCTTACACT-GACACATC-TC
62 TGTCCCAGACATGGTCTTACACTAG-CTC-TCGTC
* *
70829614 GTAGT-CGATG-CATGTCCCAGACAT-GTCTTACACTGGCT-TACATCTAGAGGTCGATG-CATG
1 -TAATGCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTACATATA-AGGTCGATGCCATG
70829674 TCCCAGACAT-GTCTTACACTAGCTCTCGTC
64 TCCCAGACATGGTCTTACACTAGCTCTCGTC
*
70829704 TCAATGCTGATGCCATGTCCCAGACATGGTCTTACACTGGCTCT-CATAATATGGTCGATG-CAT
1 T-AATGC-GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTACAT-ATAAGGTCGATGCCAT
70829767 GTCCCAGACAT-GTCTTACACTAGC
63 GTCCCAGACATGGTCTTACACTAGC
70829791 ACACAAATAA
Statistics
Matches: 227, Mismatches: 27, Indels: 42
0.77 0.09 0.14
Matches are distributed among these distances:
89 3 0.01
90 16 0.07
91 16 0.07
92 13 0.06
93 16 0.07
94 67 0.30
95 18 0.08
96 42 0.19
97 2 0.01
98 2 0.01
99 31 0.14
100 1 0.00
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.28
Consensus pattern (94 bp):
TAATGCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTACATATAAGGTCGATGCCATGTC
CCAGACATGGTCTTACACTAGCTCTCGTC
Found at i:70829774 original size:140 final size:142
Alignment explanation
Indices: 70829428--70829788 Score: 450
Period size: 140 Copynumber: 2.5 Consensus size: 142
70829418 GTATAATGTC
* *
70829428 GATGCCATGTCCCAAACATGGTCTTACATTGGCTCATCCATCA-AGTCGATGCCATGTCCCAGAC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCAT-CATCATAGTCGATG-CATGTCCCAGAC
70829492 ATGGTCTTACACTAACTATTGAAATTGAGGCCGACGGCATGTCCCAGACATGGTCTTACACTAGC
64 AT-GTCTTACACTAAC-ATTGAAATTGAGGCCGACGGCATGTCCCAGACATGGTCTTACACTAGC
**
70829557 TCTCACATATCCGTGCT
127 TCT-ACATATCAATGCT
* * *
70829574 GATGCCATGTCCCAGACATGGTCTTACACTGACACATC-TCGTAGTCGATGCATGTCCCAGACAT
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCATAGTCGATGCATGTCCCAGACAT
** * * *
70829638 GTCTTACACTGGC-TT-ACATCTAGAGGTCGA-TGCATGTCCCAGACAT-GTCTTACACTAGCTC
66 GTCTTACACTAACATTGAAAT-T-GAGGCCGACGGCATGTCCCAGACATGGTCTTACACTAGCTC
* *
70829699 T-CGTCTCAATGCT
129 TACATATCAATGCT
*
70829712 GATGCCATGTCCCAGACATGGTCTTACACTGGCTC-TCATAATATGGTCGATGCATGTCCCAGAC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCATA--GTCGATGCATGTCCCAGAC
70829776 ATGTCTTACACTA
64 ATGTCTTACACTA
70829789 GCACACAAAT
Statistics
Matches: 190, Mismatches: 19, Indels: 18
0.84 0.08 0.08
Matches are distributed among these distances:
137 2 0.01
138 44 0.23
140 50 0.26
141 18 0.09
142 7 0.04
143 11 0.06
144 16 0.08
145 9 0.05
146 33 0.17
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (142 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCATAGTCGATGCATGTCCCAGACAT
GTCTTACACTAACATTGAAATTGAGGCCGACGGCATGTCCCAGACATGGTCTTACACTAGCTCTA
CATATCAATGCT
Found at i:70836075 original size:27 final size:27
Alignment explanation
Indices: 70836032--70836088 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
70836022 TACGCACGAG
*
70836032 GGGCAAAATAGTCATTTAACACCC-TAA
1 GGGCAAAATAGTAATTTAAC-CCCATAA
* *
70836059 GGGCAAAATGGTAATTTTACCCCATAA
1 GGGCAAAATAGTAATTTAACCCCATAA
70836086 GGG
1 GGG
70836089 TATCTCGGTA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
26 3 0.12
27 23 0.88
ACGTcount: A:0.37, C:0.19, G:0.21, T:0.23
Consensus pattern (27 bp):
GGGCAAAATAGTAATTTAACCCCATAA
Found at i:70836141 original size:27 final size:27
Alignment explanation
Indices: 70836067--70836159 Score: 105
Period size: 27 Copynumber: 3.4 Consensus size: 27
70836057 AAGGGCAAAA
* * * * *
70836067 TGGTAATTTTACCCCATAAGGGTATCT
1 TGGTAATTCTACCCTACAGGGGTATTT
* *
70836094 CGGTAATTCTACCCTATAGGGGTATTT
1 TGGTAATTCTACCCTACAGGGGTATTT
*
70836121 TGGTAATTCTACCTTACAGGGGTATTT
1 TGGTAATTCTACCCTACAGGGGTATTT
*
70836148 TGCTAATTCTAC
1 TGGTAATTCTAC
70836160 AAGTTATCCA
Statistics
Matches: 57, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 57 1.00
ACGTcount: A:0.24, C:0.18, G:0.19, T:0.39
Consensus pattern (27 bp):
TGGTAATTCTACCCTACAGGGGTATTT
Done.