Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 217 of 349
Found at i:70845717 original size:18 final size:19
Alignment explanation
Indices: 70845694--70845729 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
70845684 TAAACTTGGC
*
70845694 AACATAA-TCATTTAATTT
1 AACATAATTCAATTAATTT
70845712 AACATAATTCAATTAATT
1 AACATAATTCAATTAATT
70845730 CACTAAATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 7 0.44
19 9 0.56
ACGTcount: A:0.47, C:0.11, G:0.00, T:0.42
Consensus pattern (19 bp):
AACATAATTCAATTAATTT
Found at i:70846060 original size:30 final size:30
Alignment explanation
Indices: 70846026--70846084 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
70846016 TCCTTAACTC
70846026 AAACTTTTGAAAAATTACAATTTTGCCCCA
1 AAACTTTTGAAAAATTACAATTTTGCCCCA
* * * *
70846056 AAACTTTTGCATATTTACACTTTTGCCCC
1 AAACTTTTGAAAAATTACAATTTTGCCCC
70846085 TAGGCTCGGA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.32, C:0.24, G:0.07, T:0.37
Consensus pattern (30 bp):
AAACTTTTGAAAAATTACAATTTTGCCCCA
Found at i:70855657 original size:27 final size:26
Alignment explanation
Indices: 70855613--70855664 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
70855603 CTCACTGCAA
*
70855613 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
70855640 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
70855665 GCAGCCTCGA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:70855741 original size:27 final size:27
Alignment explanation
Indices: 70855703--70855789 Score: 95
Period size: 27 Copynumber: 3.3 Consensus size: 27
70855693 CCACATATAT
*
70855703 ATATCTGT-TCTGGTGGCCTAGCCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
* * * *
70855729 ATATTTGTATCTGGTGACTTTGTCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
* * *
70855756 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
70855783 ATATCTG
1 ATATCTG
70855790 GCAGCCTCGT
Statistics
Matches: 53, Mismatches: 7, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
26 7 0.13
27 46 0.87
ACGTcount: A:0.22, C:0.21, G:0.20, T:0.38
Consensus pattern (27 bp):
ATATCTGTATCTGGTGACCTAGCCACA
Found at i:70857267 original size:79 final size:78
Alignment explanation
Indices: 70857165--70857387 Score: 256
Period size: 79 Copynumber: 2.8 Consensus size: 78
70857155 GCTTCTCGTT
* *
70857165 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGG-CTTAGCCCGG-TATAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCGG
*
70857230 ATTTAGTAACTCGCA
64 AATTAGTAACTCGCA
* *
70857245 CAAATGCCTTCGGGCTTAGCCCGGAATTAGT-ATCTCGCACAAATGCCTTCGGG-CTTAGCCCGA
1 CAAATGCCTTCGGGCTTAGCCCGGTA-TAGTAAT-TCGCACAAATGCCTTCGGGACTTAGCCCGG
*
70857308 AATTAGTATCTCGCA
64 AATTAGTAACTCGCA
* * * * *
70857323 CAAATGCCTTCGGATCTTAGTCCGGATATTGTCACTTAGCAC-AA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGG-GCTTAGCCCGG-TATAGT-AATTCGCACAAATGCCTTCGGGACTTAGCCCG
70857386 GA
63 GA
70857388 CATCATTCAA
Statistics
Matches: 123, Mismatches: 13, Indels: 15
0.81 0.09 0.10
Matches are distributed among these distances:
78 46 0.37
79 56 0.46
80 20 0.16
81 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (78 bp):
CAAATGCCTTCGGGCTTAGCCCGGTATAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCGGAA
TTAGTAACTCGCA
Found at i:70857282 original size:39 final size:40
Alignment explanation
Indices: 70857165--70857387 Score: 257
Period size: 39 Copynumber: 5.7 Consensus size: 40
70857155 GCTTCTCGTT
* *
70857165 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
70857205 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
70857245 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
*
70857284 CAAATGCCTTCGGG-CTTAGCCCGAAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
70857323 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
70857364 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
70857388 CATCATTCAA
Statistics
Matches: 164, Mismatches: 11, Indels: 17
0.85 0.06 0.09
Matches are distributed among these distances:
38 2 0.01
39 88 0.54
40 63 0.38
41 11 0.07
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:70859732 original size:27 final size:27
Alignment explanation
Indices: 70859702--70859978 Score: 401
Period size: 27 Copynumber: 10.3 Consensus size: 27
70859692 GTTACAGTAT
*
70859702 TTTTACCCTACCGGGGCATTACGGTCA
1 TTTTACCCTACAGGGGCATTACGGTCA
* *
70859729 TTTTACCCTACAGGCGCATTGCGGTCA
1 TTTTACCCTACAGGGGCATTACGGTCA
*
70859756 TTTTACCCTACAGGGGTATTACGGTCA
1 TTTTACCCTACAGGGGCATTACGGTCA
*
70859783 TTTTACCCTACAGAGGCATTACGGTCA
1 TTTTACCCTACAGGGGCATTACGGTCA
*
70859810 TTTTACCCTACAGGGGTATTACGGTCA
1 TTTTACCCTACAGGGGCATTACGGTCA
*
70859837 TTTTACCCTACAGGGGCATTACAGTCA
1 TTTTACCCTACAGGGGCATTACGGTCA
*
70859864 TCTTACCCTACAGGGGCATTACGGTCA
1 TTTTACCCTACAGGGGCATTACGGTCA
* * *
70859891 TTTTACCCTACAAGGGCATTACTGTTA
1 TTTTACCCTACAGGGGCATTACGGTCA
* *
70859918 ATTTACCCTACAGGGGCATTACAGTCA
1 TTTTACCCTACAGGGGCATTACGGTCA
* * **
70859945 TTTTACCCTACAAGAGTGTTACGGTCA
1 TTTTACCCTACAGGGGCATTACGGTCA
70859972 TTTTACC
1 TTTTACC
70859979 TATTTTGGGG
Statistics
Matches: 222, Mismatches: 28, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 222 1.00
ACGTcount: A:0.23, C:0.26, G:0.19, T:0.31
Consensus pattern (27 bp):
TTTTACCCTACAGGGGCATTACGGTCA
Found at i:70872678 original size:48 final size:48
Alignment explanation
Indices: 70872607--70872993 Score: 603
Period size: 48 Copynumber: 8.0 Consensus size: 48
70872597 CAAGATAAAT
* * *
70872607 ATATATATGTGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
70872655 ATATGTACATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
70872703 ATATGTATATGTGGTAAAGTCGAATGGCTAATATGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
70872751 ATATGTATATGTGGTAAAGCCGAATGGCTAATATGAAATATTTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* * *
70872799 ATATATATATGTGGTAAAGCTGAATGGCTAATGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
70872847 ATATGTATATATGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
70872895 ATATGTATATGAGGTAAAGCCGAATGGCTAGTGTGAAATATGTGATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGT-ATGAG
* *
70872944 ATATGTATATTTGGTAAAGCCGAATGGCTAATGTGAAATATGTAGGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
70872992 AT
1 AT
70872994 GTGTGTATAT
Statistics
Matches: 312, Mismatches: 26, Indels: 2
0.92 0.08 0.01
Matches are distributed among these distances:
48 267 0.86
49 45 0.14
ACGTcount: A:0.36, C:0.06, G:0.26, T:0.32
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
Found at i:70876838 original size:33 final size:34
Alignment explanation
Indices: 70876795--70876860 Score: 89
Period size: 33 Copynumber: 2.0 Consensus size: 34
70876785 ATAGTGCATG
* *
70876795 TAGTAACAGTCTGAGCCTGAGCCTTATTCAGTAT
1 TAGTAACAGTCTGAGCCTGAGCCCTATACAGTAT
* *
70876829 TAGT-ACAGTCTGGGCCTTAGCCCTATACAGTA
1 TAGTAACAGTCTGAGCCTGAGCCCTATACAGTA
70876861 ACAGTGTGGG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
33 24 0.86
34 4 0.14
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (34 bp):
TAGTAACAGTCTGAGCCTGAGCCCTATACAGTAT
Found at i:70876893 original size:28 final size:28
Alignment explanation
Indices: 70876833--70876893 Score: 77
Period size: 28 Copynumber: 2.2 Consensus size: 28
70876823 CAGTATTAGT
* * *
70876833 ACAGTCTGGGCCTTAGCCCTATACAGTA
1 ACAGTCTGGGCCTAAGCCCAATACAATA
*
70876861 ACAGTGTGGGCCTAAGCCCAATACAATA
1 ACAGTCTGGGCCTAAGCCCAATACAATA
*
70876889 TCAGT
1 ACAGT
70876894 ATAGTGTAAT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.30, C:0.26, G:0.21, T:0.23
Consensus pattern (28 bp):
ACAGTCTGGGCCTAAGCCCAATACAATA
Found at i:70877125 original size:27 final size:27
Alignment explanation
Indices: 70877051--70877126 Score: 75
Period size: 27 Copynumber: 2.8 Consensus size: 27
70877041 CTTCCAAAAT
* *
70877051 AGTAAGTGTGACA-AAGCCACCAGTATC
1 AGTAATTGTGACACAA-CCACCAGTAAC
*
70877078 AGTAATTGTGGCACAACCACCAGTAAC
1 AGTAATTGTGACACAACCACCAGTAAC
* *
70877105 AGTGAA-TGTGACATAATCACCA
1 AGT-AATTGTGACACAACCACCA
70877127 CTACAATACT
Statistics
Matches: 41, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
27 37 0.90
28 4 0.10
ACGTcount: A:0.38, C:0.22, G:0.20, T:0.20
Consensus pattern (27 bp):
AGTAATTGTGACACAACCACCAGTAAC
Found at i:70877321 original size:27 final size:27
Alignment explanation
Indices: 70877291--70877387 Score: 106
Period size: 27 Copynumber: 3.6 Consensus size: 27
70877281 ATACGGGGGT
* * *
70877291 ATTATGGTGATTTTACCCTAGAGGGAC
1 ATTACGGTCATTTTACCCTACAGGGAC
*
70877318 ATTACGGTCATTTTA-CCTACAGGGGC
1 ATTACGGTCATTTTACCCTACAGGGAC
* * *
70877344 ACTACGGTCATTTTACCCTACAAGGAT
1 ATTACGGTCATTTTACCCTACAGGGAC
* *
70877371 GTTACGATCATTTTACC
1 ATTACGGTCATTTTACC
70877388 TATTTTGGGG
Statistics
Matches: 58, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
26 23 0.40
27 35 0.60
ACGTcount: A:0.26, C:0.22, G:0.20, T:0.33
Consensus pattern (27 bp):
ATTACGGTCATTTTACCCTACAGGGAC
Found at i:70877349 original size:26 final size:27
Alignment explanation
Indices: 70877300--70877365 Score: 98
Period size: 26 Copynumber: 2.5 Consensus size: 27
70877290 TATTATGGTG
* *
70877300 ATTTTACCCTAGAGGGACATTACGGTC
1 ATTTTACCCTACAGGGACACTACGGTC
*
70877327 ATTTTA-CCTACAGGGGCACTACGGTC
1 ATTTTACCCTACAGGGACACTACGGTC
70877353 ATTTTACCCTACA
1 ATTTTACCCTACA
70877366 AGGATGTTAC
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
26 23 0.66
27 12 0.34
ACGTcount: A:0.26, C:0.26, G:0.18, T:0.30
Consensus pattern (27 bp):
ATTTTACCCTACAGGGACACTACGGTC
Found at i:70878464 original size:32 final size:32
Alignment explanation
Indices: 70878423--70878487 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
70878413 AATCAAAAAG
70878423 AAAGAATAAAATCGTGGGGAGGGAGAGAGAGC
1 AAAGAATAAAATCGTGGGGAGGGAGAGAGAGC
70878455 AAAGAATAAAATCGTGGGGAGGGAGAGAGAGC
1 AAAGAATAAAATCGTGGGGAGGGAGAGAGAGC
70878487 A
1 A
70878488 GCCTAAAAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.45, C:0.06, G:0.40, T:0.09
Consensus pattern (32 bp):
AAAGAATAAAATCGTGGGGAGGGAGAGAGAGC
Found at i:70880433 original size:44 final size:42
Alignment explanation
Indices: 70880369--70880535 Score: 131
Period size: 42 Copynumber: 3.9 Consensus size: 42
70880359 TAGTATTCTG
70880369 ATATGTGATTCGTGTAAGACCACATCTGGGACGTTGGCATCA
1 ATATGTGATTCGTGTAAGACCACATCTGGGACGTTGGCATCA
* ** * *
70880411 ATTTGTGATTTACGTGTAAGACCATGTCTGGGACATCGGCATC-
1 ATATGTGA-TT-CGTGTAAGACCACATCTGGGACGTTGGCATCA
* * * ** *
70880454 GTATATGAGTTTGTGTAAGACCTTATCTGGGACAG-TGGCATTA
1 ATATGTGA-TTCGTGTAAGACCACATCTGGGAC-GTTGGCATCA
* ** * *
70880497 ATATGTGATTACATGTAAGACTGCGTCTTGGACGTTGGC
1 ATATGTGATT-CGTGTAAGACCACATCTGGGACGTTGGC
70880536 GTTTTACGAG
Statistics
Matches: 95, Mismatches: 24, Indels: 11
0.73 0.18 0.08
Matches are distributed among these distances:
42 34 0.36
43 34 0.36
44 27 0.28
ACGTcount: A:0.25, C:0.16, G:0.27, T:0.32
Consensus pattern (42 bp):
ATATGTGATTCGTGTAAGACCACATCTGGGACGTTGGCATCA
Found at i:70882378 original size:6 final size:6
Alignment explanation
Indices: 70882367--70882398 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
70882357 AATCTGTATT
70882367 TTTTTA TTTTTA TTTTTA -TTTTA -TTTTA TTTT
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTT
70882399 CACAAATTGG
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 10 0.40
6 15 0.60
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (6 bp):
TTTTTA
Found at i:70884236 original size:38 final size:39
Alignment explanation
Indices: 70884122--70884303 Score: 210
Period size: 39 Copynumber: 4.6 Consensus size: 39
70884112 GCTCCTCGTT
*
70884122 CAAATGCCTTCGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGACTTAGCCCGGATT-TAGTAACTCGCA
*
70884161 CAAATGCCTTCGGGACTTA-ACCGGATTTAGTAACTCGCA
1 CAAATGCCTTC-GGACTTAGCCCGGATTTAGTAACTCGCA
* *
70884200 CAAATGCCTTCGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
70884238 CAAATGCCTTCGGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
70884279 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTC-GGACTTAGCCCGGA
70884304 CATCATTCAA
Statistics
Matches: 123, Mismatches: 13, Indels: 13
0.83 0.09 0.09
Matches are distributed among these distances:
37 4 0.03
38 32 0.26
39 38 0.31
40 38 0.31
41 11 0.09
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (39 bp):
CAAATGCCTTCGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:70884248 original size:77 final size:81
Alignment explanation
Indices: 70884122--70884303 Score: 225
Period size: 77 Copynumber: 2.3 Consensus size: 81
70884112 GCTCCTCGTT
* *
70884122 CAAATGCCTTCGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTA-ACCG
1 CAAATGCCTTCGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAGACCG
* *
70884184 GATTTAGTAAC-TCGCA
65 GATATAGTAACTTAGCA
* *
70884200 CAAATGCCTTCGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAGACCGG
* *
70884263 ATATGGTCACTTAGCA
66 ATATAGTAACTTAGCA
70884279 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTC-GGACTTAGCCCGGA
70884304 CATCATTCAA
Statistics
Matches: 90, Mismatches: 8, Indels: 10
0.83 0.07 0.09
Matches are distributed among these distances:
76 3 0.03
77 35 0.39
78 31 0.34
79 10 0.11
80 11 0.12
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (81 bp):
CAAATGCCTTCGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAGACCGG
ATATAGTAACTTAGCA
Found at i:70892220 original size:79 final size:81
Alignment explanation
Indices: 70892118--70892302 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 81
70892108 GCTCCTCATT
* *
70892118 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACT-
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTT-ACTC
* *
70892180 CGGATTTAGTAAC-TCGCA
63 CGGATATAGTAACTTAGCA
* *
70892198 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTACTCCGG
* *
70892262 ATATGGTCACTTAGCA
66 ATATAGTAACTTAGCA
70892278 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
70892303 CATCATTCAA
Statistics
Matches: 92, Mismatches: 8, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
78 5 0.05
79 53 0.58
80 34 0.37
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTACTCCGG
ATATAGTAACTTAGCA
Found at i:70892302 original size:40 final size:40
Alignment explanation
Indices: 70892118--70892302 Score: 225
Period size: 40 Copynumber: 4.7 Consensus size: 40
70892108 GCTCCTCATT
* *
70892118 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * *
70892158 CAAATGCCTTCGGGACTTAACTCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
70892198 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
70892237 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
70892278 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
70892303 CATCATTCAA
Statistics
Matches: 124, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
38 2 0.02
39 31 0.25
40 79 0.64
41 12 0.10
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:70905112 original size:43 final size:42
Alignment explanation
Indices: 70905064--70905227 Score: 145
Period size: 43 Copynumber: 3.8 Consensus size: 42
70905054 GAAGCATATA
* * *
70905064 CAATGCCAACGTCCCAGACGTTGTCTTACATGCAATCAAACAT
1 CAATGCCAACGTCCCAGACATGGTCTTACATGAAATCAAA-AT
* *
70905107 CAATGCC-ACTGTCCCAGACAAGGTCTTACATGAAATC-AGAT
1 CAATGCCAAC-GTCCCAGACATGGTCTTACATGAAATCAAAAT
* * * * *
70905148 ACGATGCTGAA-GTCCCAGACATGGTCTTACACGTAAAACAGAAGT
1 -CAATGC-CAACGTCCCAGACATGGTCTTACATG-AAATCA-AAAT
* *
70905193 CAATGCCAACGTCCCAGACGTGGTCTTACACGAAA
1 CAATGCCAACGTCCCAGACATGGTCTTACATGAAA
70905228 ACACATATCG
Statistics
Matches: 98, Mismatches: 15, Indels: 16
0.76 0.12 0.12
Matches are distributed among these distances:
41 2 0.02
42 28 0.29
43 39 0.40
44 27 0.28
45 2 0.02
ACGTcount: A:0.34, C:0.27, G:0.18, T:0.21
Consensus pattern (42 bp):
CAATGCCAACGTCCCAGACATGGTCTTACATGAAATCAAAAT
Found at i:70915538 original size:43 final size:42
Alignment explanation
Indices: 70915490--70915653 Score: 145
Period size: 43 Copynumber: 3.8 Consensus size: 42
70915480 GAAGCATATA
*
70915490 CAATGCCAACGTCCCAGACGTGGTCTTACATGCAATCAAACAT
1 CAATGCCAACGTCCCAGACGTGGTCTTACATGAAATCAAA-AT
** * *
70915533 CAATGCCATTGTCCTAGACAG-GGTCTTACATGAAATC-AGAT
1 CAATGCCAACGTCCCAGAC-GTGGTCTTACATGAAATCAAAAT
* * * *
70915574 ACGATGCCGAA-GTCCCAGACATGGTCTTACATGTAAAACAGAAGT
1 -CAATGCC-AACGTCCCAGACGTGGTCTTACATG-AAATCA-AAAT
* * *
70915619 CGATGCCAACATCCCAGACGTGGTCTTACACGAAA
1 CAATGCCAACGTCCCAGACGTGGTCTTACATGAAA
70915654 ACACATATCG
Statistics
Matches: 98, Mismatches: 15, Indels: 16
0.76 0.12 0.12
Matches are distributed among these distances:
41 2 0.02
42 26 0.27
43 41 0.42
44 27 0.28
45 2 0.02
ACGTcount: A:0.33, C:0.26, G:0.20, T:0.21
Consensus pattern (42 bp):
CAATGCCAACGTCCCAGACGTGGTCTTACATGAAATCAAAAT
Found at i:70915636 original size:44 final size:42
Alignment explanation
Indices: 70915548--70915656 Score: 123
Period size: 44 Copynumber: 2.5 Consensus size: 42
70915538 CCATTGTCCT
* * *
70915548 AGACAGGGTCTTACATGAAATCAGATACGATGCCGAAGTCCC
1 AGACATGGTCTTACATGAAAACAGATACGATGCCGAAATCCC
70915590 AGACATGGTCTTACATGTAAAACAGA-AGTCGATGCC-AACATCCC
1 AGACATGGTCTTACATG-AAAACAGATA--CGATGCCGAA-ATCCC
* *
70915634 AGACGTGGTCTTACACGAAAACA
1 AGACATGGTCTTACATGAAAACA
70915657 CATATCGGAT
Statistics
Matches: 58, Mismatches: 5, Indels: 7
0.83 0.07 0.10
Matches are distributed among these distances:
42 17 0.29
43 15 0.26
44 26 0.45
ACGTcount: A:0.36, C:0.24, G:0.21, T:0.19
Consensus pattern (42 bp):
AGACATGGTCTTACATGAAAACAGATACGATGCCGAAATCCC
Found at i:70927218 original size:48 final size:48
Alignment explanation
Indices: 70927092--70927379 Score: 454
Period size: 48 Copynumber: 6.0 Consensus size: 48
70927082 CAAGATAAAT
* * *
70927092 ATATATATGTGTGGTAAAGCCGAATGGCTAATATGAAATATGTTTGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
70927140 --ATACATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* * *
70927186 ATATGTATATGTGGTAGAGCCGAATGGTTAATGTGAAATATGTATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
70927234 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
70927282 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* * * *
70927330 ATATATATATGTGGTAAAGTCGAATGGCTAATGAGCAATATGTAGGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
70927378 AT
1 AT
70927380 GTGTGTATAT
Statistics
Matches: 223, Mismatches: 15, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
46 42 0.19
48 181 0.81
ACGTcount: A:0.36, C:0.06, G:0.26, T:0.31
Consensus pattern (48 bp):
ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
Found at i:70931508 original size:23 final size:23
Alignment explanation
Indices: 70931478--70931524 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
70931468 CAATATAAGA
*
70931478 TAGTTCATGATAGACTTTCCCTT
1 TAGTTCATGATAAACTTTCCCTT
70931501 TAGTTCATGATAAACTTTCCCTT
1 TAGTTCATGATAAACTTTCCCTT
70931524 T
1 T
70931525 TTGGCGACCT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.23, C:0.21, G:0.11, T:0.45
Consensus pattern (23 bp):
TAGTTCATGATAAACTTTCCCTT
Found at i:70932739 original size:31 final size:31
Alignment explanation
Indices: 70932679--70932749 Score: 81
Period size: 31 Copynumber: 2.3 Consensus size: 31
70932669 AAAAACCCAA
* **
70932679 AAAAGAATGATATATATCTTAGGTGAACTCT
1 AAAAGAATGATATATATATTAGGCAAACTCT
70932710 AAAAGAATGATATATATA-TATGGCAAACTCT
1 AAAAGAATGATATATATATTA-GGCAAACTCT
* *
70932741 GAAGGAATG
1 AAAAGAATG
70932750 GAACATATGG
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
30 2 0.06
31 32 0.94
ACGTcount: A:0.45, C:0.08, G:0.18, T:0.28
Consensus pattern (31 bp):
AAAAGAATGATATATATATTAGGCAAACTCT
Found at i:70932770 original size:27 final size:27
Alignment explanation
Indices: 70932727--70932804 Score: 104
Period size: 27 Copynumber: 2.9 Consensus size: 27
70932717 TGATATATAT
*
70932727 ATATGGCAAACTCTGAAGGAATGGAAC
1 ATATGGCAAAATCTGAAGGAATGGAAC
* *
70932754 ATATGGCAAAATTTGAAGGAATGGAAT
1 ATATGGCAAAATCTGAAGGAATGGAAC
*
70932781 ATATGG-AAAACTCTAAAGGAATGG
1 ATATGGCAAAA-TCTGAAGGAATGG
70932805 TTCTATTGAG
Statistics
Matches: 45, Mismatches: 5, Indels: 2
0.87 0.10 0.04
Matches are distributed among these distances:
26 4 0.09
27 41 0.91
ACGTcount: A:0.44, C:0.09, G:0.26, T:0.22
Consensus pattern (27 bp):
ATATGGCAAAATCTGAAGGAATGGAAC
Found at i:70962466 original size:408 final size:404
Alignment explanation
Indices: 70961707--70962903 Score: 1900
Period size: 408 Copynumber: 2.9 Consensus size: 404
70961697 TGTAATTGTT
* * *
70961707 GAGTTAAAGAATTATGTGATAAGCTGAATCCCCTAGTAAGAAAATAGGCATAATAAACGGACATG
1 GAGTCAAAGAATCATGTGATAAGCTGAATCCCCTAGTAA-AAAATAGGCATAATAAA-GGGCATG
** *
70961772 TATGTAACTAATTTTATGCAAGGGAAAATTTAAATAAGAAACTAAG-TTTAGATGAAAGATAAAC
64 TATGTAACTAATTTTATGCAAGGCCAAATTTAAA-AAGAAACTGAGTTTTA-ATGAAAGATAAAC
* * * * *
70961836 TAAGTATATTAGGAGGTAATTTCTATAGTCAGAATTTCATAAGTAATTAGAATTTTTATTTTCAG
127 TAAGTACATTAGGAGGTACTTTCTATAGTCAGAATTGCATGAGTAATTAGAATTTTTATTTTTAG
* *
70961901 GGCAATATTTTTTGTGTTACTTTTGCTAAACAGGCTTATAAAGCTTAAGAAAATTTTTAGAAATA
192 GGCAATATTTTTTGTGTTACTTTTGCTAAACAGGCTTATGAAGCTTGAGAAAATTTTTAGAAATA
* * * *
70961966 GAAGATTGCTGAGAATTGAAGTACAAAATATGATCTACATAGTTTGGCATTACTAAGGTAACTAG
257 GAAGATTGCTGAGAACTGAAGTACAGAATATGATCTACATAGTTTGGCATTACTAAGGTAATTAT
*
70962031 GTTGTTGTGGCAATTCATGCATATTTTGCTTGAGGACAAGCAATAACTTAGGTTTTGGGGTGTGA
322 GTTGTTGTGGCAATTCATGCATATTTTGCTTGAGGATAAGCAATAACTTAGGTTTTGGGGTGTGA
70962096 TAATTCTTGAAAAGTGTC
387 TAATTCTTGAAAAGTGTC
*
70962114 GAGTCAAAGAATCATGTGATAAGCTGAATCCCCTAGTAAAATATTAGGCATAATAAATGGGCATG
1 GAGTCAAAGAATCATGTGATAAGCTGAATCCCCTAGTAAAA-AATAGGCATAATAAA-GGGCATG
70962179 TATGTAACTAATTTTATGCAAGGCCAAATTTTAAAAAGCAAACTGAGTTTTAATGAAAGATAAAC
64 TATGTAACTAATTTTATGCAAGGCCAAA-TTTAAAAAG-AAACTGAGTTTTAATGAAAGATAAAC
*
70962244 TAAGTACATTAGGAGGTACTTTCTATAGTCAAAATTGCATGAGTAATTAGAATTTTTATTTTTAG
127 TAAGTACATTAGGAGGTACTTTCTATAGTCAGAATTGCATGAGTAATTAGAATTTTTATTTTTAG
* *
70962309 GGCGATATTTTTTGTGTTACTTTTGATAAACAGGCTTATGAAGCTTGAGAAAATTTTTAGAAATA
192 GGCAATATTTTTTGTGTTACTTTTGCTAAACAGGCTTATGAAGCTTGAGAAAATTTTTAGAAATA
* * *
70962374 AAAGATTGCTAAGAACTGAAGTACAGAATATGATCTACATAGTTTGGCATGACTAAGGTAATTAT
257 GAAGATTGCTGAGAACTGAAGTACAGAATATGATCTACATAGTTTGGCATTACTAAGGTAATTAT
* *
70962439 ATTGTTGTGGCAATTCATGCATATTTTGCTTGAGGATAAGCAATAACTTAGG-CTTGGGAGTGTG
322 GTTGTTGTGGCAATTCATGCATATTTTGCTTGAGGATAAGCAATAACTTAGGTTTTGGG-GTGTG
70962503 ATAATTCTTGAAAAGTGTC
386 ATAATTCTTGAAAAGTGTC
* * *
70962522 GAGTCAAAGAATCATGTGATAAGTTGAATCCCCTAGTAAAAAAATAGGCATAATAAACGG-A--C
1 GAGTCAAAGAATCATGTGATAAGCTGAATCCCCTAGT-AAAAAATAGGCATAATAAAGGGCATGT
* * *
70962584 ATGTAACTGATTTTATGCAAGACCAAATTTAAAAAGGAAACTGAGTTTAAATGAAAGATAAACTA
65 ATGTAACTAATTTTATGCAAGGCCAAATTTAAAAA-GAAACTGAGTTTTAATGAAAGATAAACTA
*
70962649 AGTACATTAGGAGGTACTTTCTATAGTCAGAATTGCATGAGTAATTAGAATTTTTATTTTTTTGG
129 AGTACATTAGGAGGTACTTTCTATAGTCAGAATTGCATGAGTAATTAGAATTTTTA-TTTTTAGG
* * *
70962714 GCAATATTTTTTGTATTACTTTTGCTAAACAAGCTTATGAAGCTTGAGCAAATTTTTAGAAATAG
193 GCAATATTTTTTGTGTTACTTTTGCTAAACAGGCTTATGAAGCTTGAGAAAATTTTTAGAAATAG
*
70962779 AAGATTGCTGAGAACTGAAGTACAGAATATGATATACATAGTTTGGCATTACTAAGGTAATTATG
258 AAGATTGCTGAGAACTGAAGTACAGAATATGATCTACATAGTTTGGCATTACTAAGGTAATTATG
*
70962844 TTGTTGTGGCAATTCATGCATATTTTGCTTGAGGATAAGCAATAACTTAGGTTTGGGGGT
323 TTGTTGTGGCAATTCATGCATATTTTGCTTGAGGATAAGCAATAACTTAGGTTTTGGGGT
70962904 ATTGTAACAC
Statistics
Matches: 732, Mismatches: 49, Indels: 21
0.91 0.06 0.03
Matches are distributed among these distances:
403 90 0.12
404 206 0.28
405 4 0.01
406 3 0.00
407 93 0.13
408 328 0.45
409 8 0.01
ACGTcount: A:0.37, C:0.10, G:0.20, T:0.34
Consensus pattern (404 bp):
GAGTCAAAGAATCATGTGATAAGCTGAATCCCCTAGTAAAAAATAGGCATAATAAAGGGCATGTA
TGTAACTAATTTTATGCAAGGCCAAATTTAAAAAGAAACTGAGTTTTAATGAAAGATAAACTAAG
TACATTAGGAGGTACTTTCTATAGTCAGAATTGCATGAGTAATTAGAATTTTTATTTTTAGGGCA
ATATTTTTTGTGTTACTTTTGCTAAACAGGCTTATGAAGCTTGAGAAAATTTTTAGAAATAGAAG
ATTGCTGAGAACTGAAGTACAGAATATGATCTACATAGTTTGGCATTACTAAGGTAATTATGTTG
TTGTGGCAATTCATGCATATTTTGCTTGAGGATAAGCAATAACTTAGGTTTTGGGGTGTGATAAT
TCTTGAAAAGTGTC
Found at i:70973779 original size:27 final size:26
Alignment explanation
Indices: 70973735--70973836 Score: 70
Period size: 27 Copynumber: 4.0 Consensus size: 26
70973725 AACCCCAAAA
*
70973735 TAGGTAAAAT-AATCGTAATAACCCTG
1 TAGGTAAAATGACT-GTAATAACCCTG
70973761 TAGGGTAAAATGACTGTAAT-ACCCT-
1 TA-GGTAAAATGACTGTAATAACCCTG
* * **
70973786 T--GTAACATGACCGTAATGCCCCTG
1 TAGGTAAAATGACTGTAATAACCCTG
* * *
70973810 TAGAGTAAAATGATTGTGATACCCCTG
1 TAG-GTAAAATGACTGTAATAACCCTG
70973837 CATGGAAAAA
Statistics
Matches: 60, Mismatches: 9, Indels: 13
0.73 0.11 0.16
Matches are distributed among these distances:
22 14 0.23
23 4 0.07
24 1 0.02
25 1 0.02
26 7 0.12
27 31 0.52
28 2 0.03
ACGTcount: A:0.34, C:0.19, G:0.20, T:0.27
Consensus pattern (26 bp):
TAGGTAAAATGACTGTAATAACCCTG
Found at i:70973795 original size:22 final size:22
Alignment explanation
Indices: 70973765--70973811 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
70973755 ACCCTGTAGG
* *
70973765 GTAAAATGACTGTAATACCCTT
1 GTAAAATGACCGTAATACCCCT
* *
70973787 GTAACATGACCGTAATGCCCCT
1 GTAAAATGACCGTAATACCCCT
70973809 GTA
1 GTA
70973812 GAGTAAAATG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.32, C:0.23, G:0.17, T:0.28
Consensus pattern (22 bp):
GTAAAATGACCGTAATACCCCT
Found at i:70981181 original size:35 final size:35
Alignment explanation
Indices: 70981142--70981279 Score: 100
Period size: 35 Copynumber: 3.9 Consensus size: 35
70981132 CTATATATCG
* *
70981142 TTTCCATGGTGTCGCTCCCTAGAGCCTGTATACTA
1 TTTCCATGGTGTCACTCCGTAGAGCCTGTATACTA
* * * *
70981177 TTTCCACGGT-TACACTCCATA-AGGCTTGTAGGTAACCA
1 TTTCCATGGTGT-CACTCCGTAGA-GCCTGTA--T-ACTA
* * * *
70981215 TTTTCATGGTGTCGCTCTGTAGAGCTTGTATACTA
1 TTTCCATGGTGTCACTCCGTAGAGCCTGTATACTA
* * *
70981250 TTTTCGTGGTGTCACTCCGTAGAGTCTGTA
1 TTTCCATGGTGTCACTCCGTAGAGCCTGTA
70981280 GATAACTATT
Statistics
Matches: 80, Mismatches: 16, Indels: 14
0.73 0.15 0.13
Matches are distributed among these distances:
34 2 0.03
35 50 0.62
36 1 0.01
37 1 0.01
38 24 0.30
39 2 0.03
ACGTcount: A:0.19, C:0.23, G:0.22, T:0.36
Consensus pattern (35 bp):
TTTCCATGGTGTCACTCCGTAGAGCCTGTATACTA
Found at i:70983355 original size:15 final size:15
Alignment explanation
Indices: 70983335--70983371 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
70983325 CTAGGGAAGG
*
70983335 GAATGATCCTGGTCT
1 GAATGATCATGGTCT
70983350 GAATGATCATGGTCT
1 GAATGATCATGGTCT
*
70983365 CAATGAT
1 GAATGAT
70983372 AATCAAAACG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.27, C:0.16, G:0.24, T:0.32
Consensus pattern (15 bp):
GAATGATCATGGTCT
Found at i:70992330 original size:47 final size:47
Alignment explanation
Indices: 70992273--70992619 Score: 552
Period size: 47 Copynumber: 7.4 Consensus size: 47
70992263 GATGTACAAG
* **
70992273 GTGTGTATATGTGATAAGGCCTAATGGCTGATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
* *
70992320 GTGTACATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
*
70992367 GTGTGTATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
* *
70992414 GTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
* *
70992461 GTGTATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
*
70992508 GTGTATATATGTGATAAGGCCGAGA-GGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCTA-ATGGCCAATGTGATGAATGTGAAA
* *
70992555 GTGTGTATATGTGATAAGGCCTAATGGCCAATGTGATGGATGTGAAA
1 GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
*
70992602 GTGTATAAATGTGATAAG
1 GTGTATATATGTGATAAG
70992620 TCCCGAAGGG
Statistics
Matches: 281, Mismatches: 17, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
46 1 0.00
47 279 0.99
48 1 0.00
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.29
Consensus pattern (47 bp):
GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
Found at i:70996815 original size:38 final size:39
Alignment explanation
Indices: 70996660--70996836 Score: 275
Period size: 39 Copynumber: 4.5 Consensus size: 39
70996650 GTGTGAGATA
* * * *
70996660 TATATCTGGGCTAATTCCAGAAGGCATTTGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
*
70996699 TATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
70996738 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
*
70996777 TATATCTGGGCTAAGTCCCGAAGGC-TTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
70996815 TATATCCGGGCTTAAAGTCCCG
1 TATATCCGGGC-T-AAGTCCCG
70996837 CATGCTTTGT
Statistics
Matches: 130, Mismatches: 6, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
38 23 0.18
39 99 0.76
40 8 0.06
ACGTcount: A:0.19, C:0.21, G:0.29, T:0.31
Consensus pattern (39 bp):
TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
Found at i:71003720 original size:93 final size:93
Alignment explanation
Indices: 71003594--71003763 Score: 259
Period size: 93 Copynumber: 1.8 Consensus size: 93
71003584 GCCCATAAGC
* *
71003594 GAACTCAGACTCAACTCAACAAGCTCGAGCGTTCGCATTCATAAGTGAACTCGAACTCAACTCAA
1 GAACTCAGACTCAACTCAACAAGCTCGAACGTTCGCATCCATAAGTGAACTCGAACTCAACTCAA
*
71003659 CGAGTTTGGATGCCTAGTTACATTTCAT
66 CGAGTTCGGATGCCTAGTTACATTTCAT
* ** * *
71003687 GAACTCGGACTCAACTCAATGAGTTCGAACGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACAAGCTCGAACGTTCGCATCCATAAGTGAACTCGAACTCAACTCAA
*
71003752 CGTGTTCGGATG
66 CGAGTTCGGATG
71003764 TTCGCATCCA
Statistics
Matches: 68, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
93 68 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACAAGCTCGAACGTTCGCATCCATAAGTGAACTCGAACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAT
Found at i:71003806 original size:46 final size:46
Alignment explanation
Indices: 71003586--71003809 Score: 238
Period size: 46 Copynumber: 4.8 Consensus size: 46
71003576 TGTAACCCGC
* * * * *
71003586 CCATAAGCGAACTCAGACTCAACTCAACAAGCTC-GAGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA-TGTTCGCAT
* * * * * *
71003632 TCATAAGTGAACTCGAACTCAACTCAACGAGTTTGGATGCCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATG-TTCGCAT
* * * * *
71003678 ACATTTCA-TGAACTCGGACTCAACTCAATGAGTTCGAACGTTCGCAT
1 CCA--TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGTTCGCAT
*
71003725 CCATAAGTGAACTCGGACTCAACTCAACGTGTTCGGATGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGTTCGCAT
71003771 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATG
71003810 CCCAAATTTC
Statistics
Matches: 144, Mismatches: 28, Indels: 12
0.78 0.15 0.07
Matches are distributed among these distances:
45 2 0.01
46 106 0.74
47 34 0.24
48 2 0.01
ACGTcount: A:0.30, C:0.26, G:0.20, T:0.24
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGTTCGCAT
Found at i:71007979 original size:79 final size:81
Alignment explanation
Indices: 71007843--71008025 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
71007833 TCGAATGATG
* *
71007843 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
71007907 TGTGCGAGTTACTA-A
66 TGTGCGAGTTACTATA
* * * **
71007922 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
71007984 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGTTACTATA
* *
71008002 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
71008026 TGAACGAGTA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 59 0.66
80 30 0.33
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGTTACTATA
Found at i:71008041 original size:40 final size:40
Alignment explanation
Indices: 71007844--71008027 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
71007834 CGAATGATGT
* * * *
71007844 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* *
71007884 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
*
71007924 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
71007962 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
71008003 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
71008028 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:71008049 original size:79 final size:79
Alignment explanation
Indices: 71007896--71008050 Score: 208
Period size: 79 Copynumber: 2.0 Consensus size: 79
71007886 GGACTAAGAT
* **
71007896 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
71007961 ATCCGGGTTAAGTC
66 ATCCGGGTTAAGTC
* *
71007975 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
*
71008038 TATATCC-GGTTAA
63 TAAATCCGGGTTAA
71008051 ATTTCGAAGG
Statistics
Matches: 67, Mismatches: 6, Indels: 6
0.85 0.08 0.08
Matches are distributed among these distances:
78 2 0.03
79 41 0.61
80 24 0.36
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAGTC
Found at i:71013800 original size:27 final size:27
Alignment explanation
Indices: 71013769--71013946 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
71013759 TAAATTGTAC
71013769 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
71013796 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
71013822 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
71013850 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
71013878 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
71013905 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
71013932 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
71013947 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:71013883 original size:82 final size:81
Alignment explanation
Indices: 71013770--71013925 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
71013760 AAATTGTACA
* *
71013770 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
71013834 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
71013851 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
71013916 TGCGAGTTGA
65 TGCGAATTGA
71013926 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:71013937 original size:82 final size:81
Alignment explanation
Indices: 71013766--71013946 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
71013756 GATTAAATTG
* *
71013766 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
71013831 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
71013847 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
71013911 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
71013929 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
71013947 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:71021965 original size:27 final size:27
Alignment explanation
Indices: 71021934--71022111 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
71021924 TAAATTGTAC
71021934 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
71021961 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
71021987 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
71022015 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
71022043 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
71022070 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
71022097 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
71022112 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:71022048 original size:82 final size:81
Alignment explanation
Indices: 71021935--71022090 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
71021925 AAATTGTACA
* *
71021935 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
71021999 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
71022016 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
71022081 TGCGAGTTGA
65 TGCGAATTGA
71022091 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:71022102 original size:82 final size:81
Alignment explanation
Indices: 71021931--71022111 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
71021921 GATTAAATTG
* *
71021931 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
71021996 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
71022012 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
71022076 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
71022094 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
71022112 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:71031101 original size:43 final size:43
Alignment explanation
Indices: 71031020--71031105 Score: 113
Period size: 43 Copynumber: 2.0 Consensus size: 43
71031010 AAATCGTACA
* **
71031020 ATGCCAACGTCCCAGACATGGTCTTACATGTAGCCACATATCG
1 ATGCCAACGTCCCAGACAGGGTCTTACATGTAAACACATATCG
71031063 ATGCC-ACTGTCCCAGACAGGGTCTTAC-TCGTAAACACATATCG
1 ATGCCAAC-GTCCCAGACAGGGTCTTACAT-GTAAACACATATCG
71031106 GAATCACATA
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
42 3 0.08
43 35 0.92
ACGTcount: A:0.28, C:0.30, G:0.19, T:0.23
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACAGGGTCTTACATGTAAACACATATCG
Found at i:71035639 original size:79 final size:82
Alignment explanation
Indices: 71035528--71035712 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
71035518 GCTACTCGTT
* * *
71035528 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
71035591 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
71035608 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
71035671 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
71035688 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
71035713 CATCATTCAA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:71035712 original size:40 final size:40
Alignment explanation
Indices: 71035509--71035712 Score: 229
Period size: 40 Copynumber: 5.1 Consensus size: 40
71035499 CGGAATTTAA
** *
71035509 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
71035549 CCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
71035589 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
71035628 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
71035668 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
71035708 CCGGA
1 CCGGA
71035713 CATCATTCAA
Statistics
Matches: 139, Mismatches: 18, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.24
40 92 0.66
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:71038270 original size:43 final size:43
Alignment explanation
Indices: 71038189--71038274 Score: 113
Period size: 43 Copynumber: 2.0 Consensus size: 43
71038179 AAATCGTACA
* **
71038189 ATGCCAACGTCCCAGACATGGTCTTACATGTAGCCACATATCG
1 ATGCCAACGTCCCAGACAGGGTCTTACATGTAAACACATATCG
71038232 ATGCC-ACTGTCCCAGACAGGGTCTTAC-TCGTAAACACATATCG
1 ATGCCAAC-GTCCCAGACAGGGTCTTACAT-GTAAACACATATCG
71038275 GAATCACATA
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
42 3 0.08
43 35 0.92
ACGTcount: A:0.28, C:0.30, G:0.19, T:0.23
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACAGGGTCTTACATGTAAACACATATCG
Found at i:71042808 original size:79 final size:82
Alignment explanation
Indices: 71042697--71042881 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
71042687 GCTACTCGTT
* * *
71042697 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
71042760 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
71042777 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
71042840 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
71042857 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
71042882 CATCATTCAA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:71042881 original size:40 final size:40
Alignment explanation
Indices: 71042678--71042881 Score: 229
Period size: 40 Copynumber: 5.1 Consensus size: 40
71042668 CGGAATTTAA
** *
71042678 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
71042718 CCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
71042758 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
71042797 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
71042837 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
71042877 CCGGA
1 CCGGA
71042882 CATCATTCAA
Statistics
Matches: 139, Mismatches: 18, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.24
40 92 0.66
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:71045466 original size:43 final size:43
Alignment explanation
Indices: 71045385--71045466 Score: 103
Period size: 43 Copynumber: 1.9 Consensus size: 43
71045375 AAATCATACA
* **
71045385 ATGCCAACGTCCCAGACATGGTCTTACATGTAGCCACATATCG
1 ATGCCAACGTCCCAGACAGGGTCTTACATGTAAACACATATCG
* *
71045428 ATGCC-ACTGTCCCAGGCAGGGTCTTACTTGTAAACACAT
1 ATGCCAAC-GTCCCAGACAGGGTCTTACATGTAAACACAT
71045467 GTCGGAATCA
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
42 2 0.06
43 31 0.94
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.24
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACAGGGTCTTACATGTAAACACATATCG
Found at i:71056838 original size:23 final size:23
Alignment explanation
Indices: 71056812--71056859 Score: 80
Period size: 23 Copynumber: 2.1 Consensus size: 23
71056802 TGCTGCAGGG
71056812 TTAACATTATTATTT-CCATAACA
1 TTAACATTATT-TTTGCCATAACA
71056835 TTAACATTATTTTTGCCATAACA
1 TTAACATTATTTTTGCCATAACA
71056858 TT
1 TT
71056860 GATCGTACTT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
22 3 0.12
23 21 0.88
ACGTcount: A:0.35, C:0.17, G:0.02, T:0.46
Consensus pattern (23 bp):
TTAACATTATTTTTGCCATAACA
Found at i:71059447 original size:40 final size:40
Alignment explanation
Indices: 71059409--71059633 Score: 269
Period size: 40 Copynumber: 5.7 Consensus size: 40
71059399 GCTCCTCGTT
* * *
71059409 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGTA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
71059449 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
71059489 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * * *
71059529 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * * * *
71059568 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
71059609 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
71059634 CATCATTCAA
Statistics
Matches: 164, Mismatches: 16, Indels: 10
0.86 0.08 0.05
Matches are distributed among these distances:
38 2 0.01
39 32 0.20
40 117 0.71
41 13 0.08
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:71059593 original size:119 final size:120
Alignment explanation
Indices: 71059411--71059633 Score: 292
Period size: 119 Copynumber: 1.9 Consensus size: 120
71059401 TCCTCGTTCA
* *
71059411 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGTACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
* *
71059476 TTAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
66 ATAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
* * **
71059531 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
* * *
71059593 ATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGA
71059634 CATCATTCAA
Statistics
Matches: 89, Mismatches: 11, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
118 4 0.04
119 65 0.73
120 20 0.22
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
ATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
Found at i:71065434 original size:56 final size:56
Alignment explanation
Indices: 71065348--71065467 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
71065338 ACAAGGGATG
71065348 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
71065404 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
71065460 ATGGGCAA
1 ATGGGCAA
71065468 TAAACTAATA
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:71066734 original size:79 final size:80
Alignment explanation
Indices: 71066596--71066780 Score: 207
Period size: 79 Copynumber: 2.3 Consensus size: 80
71066586 TCGAATGATG
*
71066596 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
71066660 TGTCCGAGATACTA-A
65 TGTCCGAGATACTATA
* * * **
71066675 TTCCGGGCTAAGTCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 -TCCGGGCTAAGTCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
* *
71066738 TTGTGCGAGTTACTATA
64 TTGTCCGAGATACTATA
* * *
71066755 ACCGGGCTATGACCCGAAGGCATTTG
1 TCCGGGCTAAG-TCCGAAGGCATTTG
71066781 AACGAGTAGC
Statistics
Matches: 90, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
78 1 0.01
79 56 0.62
80 33 0.37
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTCCGAGATACTATA
Found at i:71066794 original size:40 final size:40
Alignment explanation
Indices: 71066597--71066780 Score: 187
Period size: 40 Copynumber: 4.6 Consensus size: 40
71066587 CGAATGATGT
* * * * *
71066597 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGC-GAGTTACTATAA
* * * * *
71066637 CCGGACTAAGATCCGAAGGCATTTGTCCGAGATACTA-ATT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTACTATA-A
*
71066677 CCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTACTATAA
* *
71066715 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTACTATAA
*
71066756 CCGGGCTATGACCCGAAGGCATTTG
1 CCGGGCTAAGACCCGAAGGCATTTG
71066781 AACGAGTAGC
Statistics
Matches: 122, Mismatches: 17, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
39 35 0.29
40 79 0.65
41 8 0.07
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:71066802 original size:79 final size:79
Alignment explanation
Indices: 71066649--71066813 Score: 192
Period size: 79 Copynumber: 2.1 Consensus size: 79
71066639 GGACTAAGAT
* * **
71066649 CCGAAGGCATTTGTCCGAGATACTAATTCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTCCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
71066714 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * *
71066728 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGACCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTCCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
71066791 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
71066807 CCGAAGG
1 CCGAAGG
71066814 TACGTGATTT
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 24 0.33
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTCCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:71079534 original size:27 final size:27
Alignment explanation
Indices: 71079444--71079521 Score: 102
Period size: 27 Copynumber: 2.9 Consensus size: 27
71079434 CCCCCAGTTT
* * *
71079444 GTAAAATTACCGTAATGCCCATGTAGG
1 GTAAAATGACCGTAATACCCCTGTAGG
** *
71079471 GTAAAATGACCAAAATACCCCTATAGG
1 GTAAAATGACCGTAATACCCCTGTAGG
71079498 GTAAAATGACCGTAATACCCCTGT
1 GTAAAATGACCGTAATACCCCTGT
71079522 TTAGTAAAAT
Statistics
Matches: 42, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 42 1.00
ACGTcount: A:0.37, C:0.22, G:0.18, T:0.23
Consensus pattern (27 bp):
GTAAAATGACCGTAATACCCCTGTAGG
Found at i:71079706 original size:27 final size:26
Alignment explanation
Indices: 71079675--71079761 Score: 93
Period size: 27 Copynumber: 3.2 Consensus size: 26
71079665 GGAAGTACAG
* *
71079675 TACTAGTGACTATGTCACATTCACTGT
1 TACTAGTGGCTATGCCACATT-ACTGT
*
71079702 TACTAGTGGCTATGCCACAATTACTGA
1 TACTAGTGGCTATGCCAC-ATTACTGT
* *
71079729 TACTGGTGGCTTTGCCACATTTACTGT
1 TACTAGTGGCTATGCCACA-TTACTGT
*
71079756 TTCTAG
1 TACTAG
71079762 CAGCTACACT
Statistics
Matches: 50, Mismatches: 8, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
26 1 0.02
27 46 0.92
28 3 0.06
ACGTcount: A:0.23, C:0.22, G:0.18, T:0.37
Consensus pattern (26 bp):
TACTAGTGGCTATGCCACATTACTGT
Found at i:71079951 original size:28 final size:27
Alignment explanation
Indices: 71079910--71079976 Score: 73
Period size: 28 Copynumber: 2.4 Consensus size: 27
71079900 GCATTACACT
* *
71079910 ATACTGATATTGTATTA-GGCTTAGGCCC
1 ATACTG-TACTGTA-TAGGGCTAAGGCCC
71079938 ATACTGTTACTGTATAGGGCTAAGGCCC
1 ATACTG-TACTGTATAGGGCTAAGGCCC
*
71079966 AGACTGTACTG
1 ATACTGTACTG
71079977 ATACTGACTA
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
27 7 0.21
28 27 0.79
ACGTcount: A:0.25, C:0.19, G:0.24, T:0.31
Consensus pattern (27 bp):
ATACTGTACTGTATAGGGCTAAGGCCC
Found at i:71079976 original size:33 final size:33
Alignment explanation
Indices: 71079939--71080005 Score: 100
Period size: 33 Copynumber: 2.0 Consensus size: 33
71079929 CTTAGGCCCA
*
71079939 TACTGTTACTGTA-TAGGGCTAAGGCCCAGACTG
1 TACTGATACTG-ACTAGGGCTAAGGCCCAGACTG
*
71079972 TACTGATACTGACTAGGGCTCAGGCCCAGACTG
1 TACTGATACTGACTAGGGCTAAGGCCCAGACTG
71080005 T
1 T
71080006 TACTACATGC
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
32 1 0.03
33 30 0.97
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (33 bp):
TACTGATACTGACTAGGGCTAAGGCCCAGACTG
Found at i:71098638 original size:35 final size:35
Alignment explanation
Indices: 71098592--71098661 Score: 131
Period size: 35 Copynumber: 2.0 Consensus size: 35
71098582 CAACCGGGAT
*
71098592 CCATACAATTGTCAATATCTCATCAAGAATTTCCA
1 CCATACAATTGTCAATATCTCATCAAAAATTTCCA
71098627 CCATACAATTGTCAATATCTCATCAAAAATTTCCA
1 CCATACAATTGTCAATATCTCATCAAAAATTTCCA
71098662 TAGTGTCGTA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.39, C:0.26, G:0.04, T:0.31
Consensus pattern (35 bp):
CCATACAATTGTCAATATCTCATCAAAAATTTCCA
Found at i:71101805 original size:37 final size:37
Alignment explanation
Indices: 71101755--71101827 Score: 128
Period size: 37 Copynumber: 2.0 Consensus size: 37
71101745 CTTTAGCTCA
*
71101755 GACAAAATCTCCACACGAAGTTATCGGGTCTTACCCG
1 GACAAAATCTCCACACGAAGTCATCGGGTCTTACCCG
*
71101792 GACAAAATCTCCACACGTAGTCATCGGGTCTTACCC
1 GACAAAATCTCCACACGAAGTCATCGGGTCTTACCC
71101828 AGAATATATT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.29, C:0.32, G:0.18, T:0.22
Consensus pattern (37 bp):
GACAAAATCTCCACACGAAGTCATCGGGTCTTACCCG
Found at i:71102096 original size:47 final size:47
Alignment explanation
Indices: 71102035--71102219 Score: 271
Period size: 47 Copynumber: 3.9 Consensus size: 47
71102025 GACATATATT
* * * *
71102035 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* *
71102082 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* *
71102129 TCACATTGGCCATTTGGCCTTATCATATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* **
71102176 CCACATTGGCCATTCGGCCTTATCACATATATGCACATTCACAT
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACAT
71102220 CACAATTATC
Statistics
Matches: 123, Mismatches: 15, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 123 1.00
ACGTcount: A:0.26, C:0.28, G:0.12, T:0.34
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:71106120 original size:25 final size:25
Alignment explanation
Indices: 71106085--71106134 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
71106075 GGAATTCGCA
71106085 CACACACAGTGC-CTCTAATCATTCG
1 CACACACAGTGCTCT-TAATCATTCG
* *
71106110 CACACATAGTGCTCTTATTCATTCG
1 CACACACAGTGCTCTTAATCATTCG
71106135 TATTTGCACA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 20 0.91
26 2 0.09
ACGTcount: A:0.26, C:0.32, G:0.12, T:0.30
Consensus pattern (25 bp):
CACACACAGTGCTCTTAATCATTCG
Found at i:71106385 original size:40 final size:40
Alignment explanation
Indices: 71106310--71106808 Score: 851
Period size: 40 Copynumber: 12.6 Consensus size: 40
71106300 CCAGTATGAT
* * * * *
71106310 TGCTCTTCGGGAC-CAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGGCTTAGCCCGGATACATCACTAGCACGAA
* * *
71106349 TGCTCTTCGGGGTTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGGCTTAGCCCGGATACATCACTAGCACGAA
*
71106389 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGGCTTAGCCCGGATACATCACTAGCACGAA
*
71106429 TGCTCTTCGGGGCTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGGCTTAGCCCGGATACATCACTAGCACGAA
71106469 TGCTCTTC-GGGCTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGGCTTAGCCCGGATACATCACTAGCACGAA
*
71106508 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGGCTTAGCCCGGATACATCACTAGCACGAA
71106548 TGCTCTTC-GGGCTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGGCTTAGCCCGGATACATCACTAGCACGAA
71106587 TGCTCTTCGGGGCTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGGCTTAGCCCGGATACATCACTAGCACGAA
*
71106627 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGGCTTAGCCCGGATACATCACTAGCACGAA
71106667 TGCTCTTCGGGGCTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGGCTTAGCCCGGATACATCACTAGCACGAA
*
71106707 TGCTCTTTGGGGCTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGGCTTAGCCCGGATACATCACTAGCACGAA
71106747 TGCTCTTCGGGGCTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGGCTTAGCCCGGATACATCACTAGCACGAA
*
71106787 TGCTCTTCGGGACTTAGCCCGG
1 TGCTCTTCGGGGCTTAGCCCGG
71106809 GTATACCACT
Statistics
Matches: 437, Mismatches: 20, Indels: 5
0.95 0.04 0.01
Matches are distributed among these distances:
39 87 0.20
40 350 0.80
ACGTcount: A:0.23, C:0.29, G:0.24, T:0.23
Consensus pattern (40 bp):
TGCTCTTCGGGGCTTAGCCCGGATACATCACTAGCACGAA
Found at i:71108135 original size:37 final size:37
Alignment explanation
Indices: 71108085--71108197 Score: 199
Period size: 37 Copynumber: 3.1 Consensus size: 37
71108075 CTTTAGCTCA
* *
71108085 GACAAAATCTCCACACGAAGTTATCGGGTCTTACCCG
1 GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
71108122 GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
1 GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
*
71108159 GACATAATCTCCACACGTAGTCATCGGGTCTTACCCG
1 GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
71108196 GA
1 GA
71108198 ATATATTTCC
Statistics
Matches: 73, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 73 1.00
ACGTcount: A:0.27, C:0.31, G:0.19, T:0.22
Consensus pattern (37 bp):
GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
Found at i:71108463 original size:47 final size:47
Alignment explanation
Indices: 71108402--71108586 Score: 289
Period size: 47 Copynumber: 3.9 Consensus size: 47
71108392 TACATATATT
* * * *
71108402 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* *
71108449 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
*
71108496 TCACATTGGCCATTTGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
**
71108543 TCACATTGGCCATTCGGCCTTATCACATATATGCACATTCACAT
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACAT
71108587 CACAATTATC
Statistics
Matches: 126, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 126 1.00
ACGTcount: A:0.26, C:0.28, G:0.12, T:0.34
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:71108522 original size:22 final size:22
Alignment explanation
Indices: 71108495--71108570 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
71108485 GCTCACATTC
71108495 ATCACATTGGCCATTTGGCCTT
1 ATCACATTGGCCATTTGGCCTT
* ** *
71108517 ATCACATATATG-CATGTTCACATT
1 ATCACAT-T-GGCCAT-TTGGCCTT
*
71108541 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTTGGCCTT
71108564 ATCACAT
1 ATCACAT
71108571 ATATGCACAT
Statistics
Matches: 40, Mismatches: 9, Indels: 10
0.68 0.15 0.17
Matches are distributed among these distances:
22 14 0.35
23 9 0.22
24 10 0.25
25 7 0.17
ACGTcount: A:0.25, C:0.28, G:0.13, T:0.34
Consensus pattern (22 bp):
ATCACATTGGCCATTTGGCCTT
Found at i:71119411 original size:42 final size:43
Alignment explanation
Indices: 71119313--71119420 Score: 123
Period size: 42 Copynumber: 2.5 Consensus size: 43
71119303 AACAAGTACA
* * *
71119313 ATGCCGATGTCCCGGAC-GTGGTCTTACATGTAACTCAATATCG
1 ATGCCGATGTCCCAGACAG-GGTCTTACACGTAAATCAATATCG
**
71119356 ATGCCTCTGTCCCAGACAGGGTCTTACACG-AAATCAGATA-CG
1 ATGCCGATGTCCCAGACAGGGTCTTACACGTAAATCA-ATATCG
*
71119398 ATGCCGATGTCCCAGACATGGTC
1 ATGCCGATGTCCCAGACAGGGTC
71119421 CTATACTTTA
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
42 27 0.49
43 27 0.49
44 1 0.02
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (43 bp):
ATGCCGATGTCCCAGACAGGGTCTTACACGTAAATCAATATCG
Found at i:71119463 original size:84 final size:85
Alignment explanation
Indices: 71119313--71119470 Score: 214
Period size: 84 Copynumber: 1.9 Consensus size: 85
71119303 AACAAGTACA
* * * *
71119313 ATGCCGATGTCCCGGACGTGGTCTTACATGTAACTCAATATCGATGCCTCTGTCCCAGACAGGGT
1 ATGCCGATGTCCCAGACATGGTCTTACATGTAACTCAATATCGAGGCCTCTGTCCCAGACACGGT
71119378 CTTACACGAAATCAGATACG
66 CTTACACGAAATCAGATACG
* * *
71119398 ATGCCGATGTCCCAGACATGGTCCTATAC-TTTATCTC-A-ATCGAGGCCTGTGTCCCAGACACG
1 ATGCCGATGTCCCAGACATGGT-CT-TACATGTAACTCAATATCGAGGCCTCTGTCCCAGACACG
71119460 GTCTTACACGA
64 GTCTTACACGA
71119471 TGTCTCAGAT
Statistics
Matches: 64, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
84 32 0.50
85 21 0.33
86 8 0.12
87 3 0.05
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (85 bp):
ATGCCGATGTCCCAGACATGGTCTTACATGTAACTCAATATCGAGGCCTCTGTCCCAGACACGGT
CTTACACGAAATCAGATACG
Found at i:71119477 original size:42 final size:42
Alignment explanation
Indices: 71119352--71119485 Score: 112
Period size: 42 Copynumber: 3.2 Consensus size: 42
71119342 GTAACTCAAT
* * **
71119352 ATCGATGCCTCTGTCCCAGACAGGGTCTTACACGA-AATCAG
1 ATCGATGCCTGTGTCCCAGACACGGTCTTACACGATTCTCAG
* * * **
71119393 ATACGATGCC-GATGTCCCAGACATGGTCCTATACTTTATCTCA-
1 AT-CGATGCCTG-TGTCCCAGACACGGTCTTACACGAT-TCTCAG
*
71119436 ATCGAGGCCTGTGTCCCAGACACGGTCTTACACGATGTCTCAG
1 ATCGATGCCTGTGTCCCAGACACGGTCTTACACGAT-TCTCAG
*
71119479 ATAGATG
1 ATCGATG
71119486 TCAACTTTTC
Statistics
Matches: 70, Mismatches: 17, Indels: 10
0.72 0.18 0.10
Matches are distributed among these distances:
41 2 0.03
42 57 0.81
43 8 0.11
44 3 0.04
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (42 bp):
ATCGATGCCTGTGTCCCAGACACGGTCTTACACGATTCTCAG
Found at i:71127092 original size:48 final size:47
Alignment explanation
Indices: 71126911--71127084 Score: 153
Period size: 50 Copynumber: 3.7 Consensus size: 47
71126901 GGTAAGGTGC
* * * *
71126911 CGATGCCATGTCCCAGACATAGTCTTACACAAGCTCT-AGTAT-ATCTGT
1 CGATGCCATGTCCCAGACATCGTCTTACAC-TGCACTCA-TCTCATC-GT
* ** *
71126959 GCCGATGCCATGTCCCAGACATGGTCTTACACTG-ACAAATCTCGTCGT
1 --CGATGCCATGTCCCAGACATCGTCTTACACTGCACTCATCTCATCGT
*
71127007 CGATG-CATGTCCCAGACA-CGTCTGACACTAGCACTCATCTCAATC-T
1 CGATGCCATGTCCCAGACATCGTCTTACACT-GCACTCATCTC-ATCGT
*
71127053 CGATGCCATGTCCCAAACATCGTCTTACACTG
1 CGATGCCATGTCCCAGACATCGTCTTACACTG
71127085 GCTCTCATAA
Statistics
Matches: 104, Mismatches: 13, Indels: 17
0.78 0.10 0.13
Matches are distributed among these distances:
44 9 0.09
45 14 0.13
46 18 0.17
47 15 0.14
48 15 0.14
49 4 0.04
50 29 0.28
ACGTcount: A:0.25, C:0.32, G:0.17, T:0.26
Consensus pattern (47 bp):
CGATGCCATGTCCCAGACATCGTCTTACACTGCACTCATCTCATCGT
Found at i:71131064 original size:19 final size:19
Alignment explanation
Indices: 71131040--71131079 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
71131030 TGTACGGAAG
71131040 TTGGAGCATGGCTCTCGGC
1 TTGGAGCATGGCTCTCGGC
71131059 TTGGAGCATGGCTCTCGGC
1 TTGGAGCATGGCTCTCGGC
71131078 TT
1 TT
71131080 CTTCGGACTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.10, C:0.25, G:0.35, T:0.30
Consensus pattern (19 bp):
TTGGAGCATGGCTCTCGGC
Found at i:71136098 original size:49 final size:50
Alignment explanation
Indices: 71136030--71136131 Score: 145
Period size: 50 Copynumber: 2.1 Consensus size: 50
71136020 TCTTATAGAG
*
71136030 AACATATGAAAAGCATTAAA-TACATTATATTCTTTCCAAAA-AGAATTAT
1 AACATATGAAAAGCATTAAAGAACATTATATTCTTTCCAAAAGA-AATTAT
* * *
71136079 AACATATGGAAAGTATTAAAGAACGTTATATTCTTTCCAAAAGAAATTAT
1 AACATATGAAAAGCATTAAAGAACATTATATTCTTTCCAAAAGAAATTAT
71136129 AAC
1 AAC
71136132 TATTATGTTT
Statistics
Matches: 47, Mismatches: 4, Indels: 3
0.87 0.07 0.06
Matches are distributed among these distances:
49 18 0.38
50 28 0.60
51 1 0.02
ACGTcount: A:0.48, C:0.12, G:0.09, T:0.31
Consensus pattern (50 bp):
AACATATGAAAAGCATTAAAGAACATTATATTCTTTCCAAAAGAAATTAT
Found at i:71138401 original size:46 final size:45
Alignment explanation
Indices: 71138334--71138537 Score: 300
Period size: 46 Copynumber: 4.4 Consensus size: 45
71138324 GGGTGATTTT
71138334 AAAGATACCATGGCAACATGACGAGAAATGAATAAGACCATGGTTG
1 AAAGATACCATGGCAACATGAC-AGAAATGAATAAGACCATGGTTG
71138380 AAAGATACCATGGCAACATGACATGAAATGAATAAGACCATGGTTG
1 AAAGATACCATGGCAACATGACA-GAAATGAATAAGACCATGGTTG
*
71138426 AAAGATACCATGGCAACATGACGGGAAATGAATAAGACCATGGTTG
1 AAAGATACCATGGCAACATGAC-AGAAATGAATAAGACCATGGTTG
* * * *
71138472 AAAGATACCATGGTAACATGACAGAAAATGAGTAAGACTATAGTTG
1 AAAGATACCATGGCAACATGACAG-AAATGAATAAGACCATGGTTG
* * *
71138518 AAAGACACTATGGCATCATG
1 AAAGATACCATGGCAACATG
71138538 TCGAAGATAA
Statistics
Matches: 145, Mismatches: 10, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
45 2 0.01
46 143 0.99
ACGTcount: A:0.43, C:0.15, G:0.23, T:0.19
Consensus pattern (45 bp):
AAAGATACCATGGCAACATGACAGAAATGAATAAGACCATGGTTG
Found at i:71141978 original size:42 final size:42
Alignment explanation
Indices: 71141857--71141978 Score: 156
Period size: 43 Copynumber: 2.9 Consensus size: 42
71141847 TATCGAACCA
** * *
71141857 ATGCCATATCCCAGATATGGTCTTACATGTGATCTCGTATCG
1 ATGCCATATCCCAGATATGGTCTTACACATAATCTCATATCG
* * *
71141899 ATGCCAATAGCCCAGCTATGGTCTTACACGA-AGTCTCATATCG
1 ATGCC-ATATCCCAGATATGGTCTTACAC-ATAATCTCATATCG
71141942 ATGCCATATCCCAGATATGGTCTTACACATAATCTCA
1 ATGCCATATCCCAGATATGGTCTTACACATAATCTCA
71141979 GTAACCCTAA
Statistics
Matches: 67, Mismatches: 10, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
41 1 0.01
42 32 0.48
43 34 0.51
ACGTcount: A:0.28, C:0.26, G:0.16, T:0.30
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACATAATCTCATATCG
Found at i:71145899 original size:20 final size:20
Alignment explanation
Indices: 71145843--71145899 Score: 87
Period size: 20 Copynumber: 2.9 Consensus size: 20
71145833 AAGCTTATAC
* *
71145843 TAAGTAAATGGAAAGGAAAG
1 TAAGTAAATGGAATGGTAAG
71145863 TAAGTAAATGGAATGGTAAG
1 TAAGTAAATGGAATGGTAAG
*
71145883 TAAGTAAATGGAGTGGT
1 TAAGTAAATGGAATGGT
71145900 TCATAGTCTT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.46, C:0.00, G:0.32, T:0.23
Consensus pattern (20 bp):
TAAGTAAATGGAATGGTAAG
Found at i:71163731 original size:46 final size:46
Alignment explanation
Indices: 71163676--71163897 Score: 197
Period size: 47 Copynumber: 4.8 Consensus size: 46
71163666 ATGGTTGAGC
* *
71163676 ATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA-ATG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA--GATGCAACAGG
* * *
71163723 -TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGAGATGTAACTAGG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGATGCAAC-AGG
* * * * *
71163768 CATCCGAACTCATTGAGTTGAGTCCAAATTCA-TGAGATGTAACTAGG
1 -ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGATGCAAC-AGG
*
71163815 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAAC--G
1 -ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA--GATGC-AACAGG
* *
71163863 -CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTAG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAG
71163898 GGGCGGGTTA
Statistics
Matches: 150, Mismatches: 16, Indels: 21
0.80 0.09 0.11
Matches are distributed among these distances:
43 6 0.04
44 1 0.01
45 4 0.03
46 59 0.39
47 70 0.47
48 3 0.02
50 4 0.03
51 3 0.02
ACGTcount: A:0.25, C:0.20, G:0.26, T:0.29
Consensus pattern (46 bp):
ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGATGCAACAGG
Found at i:71163792 original size:47 final size:47
Alignment explanation
Indices: 71163674--71163847 Score: 221
Period size: 47 Copynumber: 3.7 Consensus size: 47
71163664 GGATGGTTGA
* * * *
71163674 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--AT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCA-TGA--GATGTAACTAG
*
71163722 G--TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATGAGATGTAACTAG
* * *
71163767 GCATCCGAACTCATTGAGTTGAGTCCAAATTCATGAGATGTAACTAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATGAGATGTAACTAG
71163814 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCAT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCAT
71163848 TTATGGATGC
Statistics
Matches: 110, Mismatches: 12, Indels: 9
0.84 0.09 0.07
Matches are distributed among these distances:
43 6 0.05
45 4 0.04
46 28 0.25
47 71 0.65
48 1 0.01
ACGTcount: A:0.26, C:0.20, G:0.25, T:0.29
Consensus pattern (47 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATGAGATGTAACTAG
Found at i:71164158 original size:19 final size:20
Alignment explanation
Indices: 71164121--71164158 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
71164111 ATAAGGTGGT
71164121 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
71164141 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
71164159 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:71175357 original size:43 final size:42
Alignment explanation
Indices: 71175284--71175434 Score: 185
Period size: 42 Copynumber: 3.6 Consensus size: 42
71175274 ACACCAATGT
* * *
71175284 CATATCCCAGATATGGTCTTACATGGAATCTCATATTGATGC
1 CATATCCTAGATATGGTCTTACACGAAATCTCATATTGATGC
* * ** *
71175326 CAATAGCCTAGCTATGGTCTTACACGAAATCTCATATCAATGT
1 C-ATATCCTAGATATGGTCTTACACGAAATCTCATATTGATGC
* * *
71175369 CGTATCCTAGATATGGTCTTACACGAAGTCTCATAATGATGC
1 CATATCCTAGATATGGTCTTACACGAAATCTCATATTGATGC
*
71175411 CATATCCTAGATATGATCTTACAC
1 CATATCCTAGATATGGTCTTACAC
71175435 ATAGTCTCGG
Statistics
Matches: 90, Mismatches: 18, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
42 56 0.62
43 34 0.38
ACGTcount: A:0.30, C:0.23, G:0.15, T:0.32
Consensus pattern (42 bp):
CATATCCTAGATATGGTCTTACACGAAATCTCATATTGATGC
Found at i:71182898 original size:40 final size:40
Alignment explanation
Indices: 71182854--71183358 Score: 832
Period size: 40 Copynumber: 12.6 Consensus size: 40
71182844 AAGCCTCAAT
* * * * *
71182854 TGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACGAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
71182894 TGCCTTCGGGTCTTAGCCCGGATATATCAACTT-GCACAAT
1 TGCCTTCGGGTCTTAGCCCGGATATATCAA-TTCGCACAAA
71182934 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
* * * * *
71182974 CGCCGTCGGCTCTTAGCCCGGATATATCAGTTTGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
* *
71183014 TGCCTTCGGGTCTTATCCCGGATATATCAAATCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
71183054 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
71183094 TGCCTTCAGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
* *
71183134 TGCCTTCAGGTCTTAGCCCAGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
71183174 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
71183214 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
71183254 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
71183294 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
71183334 TGCCTTCGGGTCTTAGCCCGGATAT
1 TGCCTTCGGGTCTTAGCCCGGATAT
71183359 CATTCAAATG
Statistics
Matches: 436, Mismatches: 27, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
39 2 0.00
40 433 0.99
41 1 0.00
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.28
Consensus pattern (40 bp):
TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
Found at i:71190688 original size:40 final size:40
Alignment explanation
Indices: 71190633--71190977 Score: 566
Period size: 40 Copynumber: 8.6 Consensus size: 40
71190623 CAAGCTCAAT
* * * * *
71190633 TGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACGAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
* *
71190673 TGCCTTCGGGTCTTAACCCGGATATATCAACTT-GCACAAT
1 TGCCTTCGGGTCTTAGCCCGGATATATCAA-TTCGCACAAA
71190713 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
* *
71190753 CGCCGTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
* *
71190793 TGCCTTCAGGTCTTAGCCCAGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
71190833 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
71190873 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
71190913 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
71190953 TGCCTTCGGGTCTTAGCCCGGATAT
1 TGCCTTCGGGTCTTAGCCCGGATAT
71190978 CATTCAAATG
Statistics
Matches: 286, Mismatches: 17, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
39 2 0.01
40 283 0.99
41 1 0.00
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.27
Consensus pattern (40 bp):
TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
Found at i:71194211 original size:57 final size:58
Alignment explanation
Indices: 71194111--71194250 Score: 142
Period size: 57 Copynumber: 2.4 Consensus size: 58
71194101 ATGTATACAA
* * ** * * * *
71194111 CAGGATTACCAGTCCAGGCTAAATCCTTTTTATGACATATGCTCTA-AGGAGTT-TGAT
1 CAGGATTACCCGTCCGGGCTAAATCCAATCTATAACATATGCTCGAGAGGACTTAT-AT
* *
71194168 CTGGATTACCCGTCCGGGCTAAATCCAATCTATAACATGTGCTCGAGAGGACTTATAT
1 CAGGATTACCCGTCCGGGCTAAATCCAATCTATAACATATGCTCGAGAGGACTTATAT
* *
71194226 CAGGATTACCCAT-TGGGCTAAATCC
1 CAGGATTACCCGTCCGGGCTAAATCC
71194251 TTTTTGTAAA
Statistics
Matches: 68, Mismatches: 13, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
57 48 0.71
58 19 0.28
59 1 0.01
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.29
Consensus pattern (58 bp):
CAGGATTACCCGTCCGGGCTAAATCCAATCTATAACATATGCTCGAGAGGACTTATAT
Found at i:71203311 original size:136 final size:136
Alignment explanation
Indices: 71203062--71203339 Score: 443
Period size: 136 Copynumber: 2.0 Consensus size: 136
71203052 GATCGCAGTA
* *
71203062 CATGAACAATGGTTATGTGACCTCTAGTAAGGCAGGTACATTGCAAACCAGACTAGCTAGCATGG
1 CATG-ACAATGGTTATGTGACCTCTAGTAAGGCAGGTACATTACAAACCAGACTAGCTAACATGG
* * *
71203127 TAAAGGAAATGAACGGAATGATTAATCTCTGAACACGAACCCGAGTTTGGCTAACACAAAGAAGG
65 CAAAGGAAATGAAAGGAATGATTAATCTCGGAACACGAACCCGAGTTTGGCTAACACAAAGAAGG
*
71203192 TTGTCTG
130 TTATCTG
71203199 CATGACAATGGTTATGT-AGCCTCTAGTAAGGCAGGTACATTACAAACCAGACTAGCTAACATGG
1 CATGACAATGGTTATGTGA-CCTCTAGTAAGGCAGGTACATTACAAACCAGACTAGCTAACATGG
* *
71203263 CAAAGGAAATGAAAGGAATGATTGATCTCGGAACACGGACCC-ATGTTTGGCTAACACAAAGAAG
65 CAAAGGAAATGAAAGGAATGATTAATCTCGGAACACGAACCCGA-GTTTGGCTAACACAAAGAAG
71203327 GTTATCTG
129 GTTATCTG
71203335 CATGA
1 CATGA
71203340 ATGTATGGGC
Statistics
Matches: 131, Mismatches: 8, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
135 2 0.02
136 125 0.95
137 4 0.03
ACGTcount: A:0.36, C:0.18, G:0.24, T:0.22
Consensus pattern (136 bp):
CATGACAATGGTTATGTGACCTCTAGTAAGGCAGGTACATTACAAACCAGACTAGCTAACATGGC
AAAGGAAATGAAAGGAATGATTAATCTCGGAACACGAACCCGAGTTTGGCTAACACAAAGAAGGT
TATCTG
Found at i:71212583 original size:27 final size:27
Alignment explanation
Indices: 71212545--71212600 Score: 78
Period size: 27 Copynumber: 2.1 Consensus size: 27
71212535 TTAAAAATAT
* *
71212545 ATTTATTTTCTCATTTTGGTATTTAAA
1 ATTTATTTTCTCAATTTGGTACTTAAA
71212572 ATTT-TTTATCTCAATTTGGTACTTAAA
1 ATTTATTT-TCTCAATTTGGTACTTAAA
71212599 AT
1 AT
71212601 ATCAATTTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
26 3 0.12
27 23 0.88
ACGTcount: A:0.29, C:0.09, G:0.07, T:0.55
Consensus pattern (27 bp):
ATTTATTTTCTCAATTTGGTACTTAAA
Found at i:71212933 original size:31 final size:31
Alignment explanation
Indices: 71212888--71212971 Score: 93
Period size: 31 Copynumber: 2.7 Consensus size: 31
71212878 TGGAATTGAA
* *
71212888 ATATATGTTAACTTTTATAATAATTT-TTA-T
1 ATATATTTTAACTTTTATAA-AATTTATAATT
71212918 ATATTATTTTAACTTTT-TAAAATTTATAATT
1 ATA-TATTTTAACTTTTATAAAATTTATAATT
*
71212949 ATATATTTTAAAATTTTATAAAA
1 ATATATTTT-AACTTTTATAAAA
71212972 AAAATATTTT
Statistics
Matches: 46, Mismatches: 3, Indels: 8
0.81 0.05 0.14
Matches are distributed among these distances:
29 5 0.11
30 14 0.30
31 22 0.48
32 5 0.11
ACGTcount: A:0.42, C:0.02, G:0.01, T:0.55
Consensus pattern (31 bp):
ATATATTTTAACTTTTATAAAATTTATAATT
Found at i:71212985 original size:22 final size:23
Alignment explanation
Indices: 71212951--71212994 Score: 63
Period size: 22 Copynumber: 1.9 Consensus size: 23
71212941 TTATAATTAT
71212951 ATATTTTAAAATTTTATAAAAAAA
1 ATATTTT-AAATTTTATAAAAAAA
*
71212975 ATATTTT-AATTTTTTAAAAA
1 ATATTTTAAATTTTATAAAAA
71212995 TATTATATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 12 0.63
24 7 0.37
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (23 bp):
ATATTTTAAATTTTATAAAAAAA
Found at i:71213002 original size:24 final size:23
Alignment explanation
Indices: 71212932--71213004 Score: 60
Period size: 22 Copynumber: 3.1 Consensus size: 23
71212922 TATTTTAACT
* **
71212932 TTTTAAAATTTAT-AATTATATA
1 TTTTAAATTTTATAAAAAATATA
*
71212954 TTTTAAAATTTTATAAAAAAAATA
1 TTTT-AAATTTTATAAAAAATATA
*
71212978 TTTT-AATTTTTTAAAAATATTATA
1 TTTTAAATTTTATAAAAA-A-TATA
71213002 TTT
1 TTT
71213005 ATTATATAAT
Statistics
Matches: 41, Mismatches: 6, Indels: 6
0.77 0.11 0.11
Matches are distributed among these distances:
22 16 0.39
23 9 0.22
24 16 0.39
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (23 bp):
TTTTAAATTTTATAAAAAATATA
Found at i:71214062 original size:35 final size:34
Alignment explanation
Indices: 71214018--71214083 Score: 96
Period size: 35 Copynumber: 1.9 Consensus size: 34
71214008 CAAGTGAAGG
*
71214018 TAGATTTAAAAAAAAATTTAATTATATATATTTAC
1 TAGAGTTAAAAAAAAATTTAATTA-ATATATTTAC
* *
71214053 TAGAGTTAAAATAAAATTTTATTAATATATT
1 TAGAGTTAAAAAAAAATTTAATTAATATATT
71214084 AATATATAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 7 0.25
35 21 0.75
ACGTcount: A:0.50, C:0.02, G:0.05, T:0.44
Consensus pattern (34 bp):
TAGAGTTAAAAAAAAATTTAATTAATATATTTAC
Found at i:71214110 original size:24 final size:23
Alignment explanation
Indices: 71214083--71214127 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
71214073 ATTAATATAT
71214083 TAATATATAAAATTATAATTTTTG
1 TAATATAT-AAATTATAATTTTTG
* *
71214107 TAATGTCTAAATTATAATTTT
1 TAATATATAAATTATAATTTT
71214128 ATAAATCCCC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 13 0.68
24 6 0.32
ACGTcount: A:0.42, C:0.02, G:0.04, T:0.51
Consensus pattern (23 bp):
TAATATATAAATTATAATTTTTG
Found at i:71215128 original size:14 final size:15
Alignment explanation
Indices: 71215110--71215147 Score: 51
Period size: 14 Copynumber: 2.6 Consensus size: 15
71215100 TTAAAATTTA
71215110 AAAAATATAAAAAAT
1 AAAAATATAAAAAAT
* *
71215125 -AAAATTTTAAAAAT
1 AAAAATATAAAAAAT
71215139 AAAAATATA
1 AAAAATATA
71215148 TTAATTAAAT
Statistics
Matches: 18, Mismatches: 4, Indels: 2
0.75 0.17 0.08
Matches are distributed among these distances:
14 12 0.67
15 6 0.33
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (15 bp):
AAAAATATAAAAAAT
Found at i:71215153 original size:23 final size:23
Alignment explanation
Indices: 71215101--71215143 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
71215091 ATTTAAATTT
71215101 TAAAATTTAAAAAATATAAAAAA
1 TAAAATTTAAAAAATATAAAAAA
*
71215124 TAAAATTTTAAAAATA-AAAA
1 TAAAATTTAAAAAATATAAAA
71215144 TATATTAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 4 0.21
23 15 0.79
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (23 bp):
TAAAATTTAAAAAATATAAAAAA
Found at i:71225167 original size:16 final size:16
Alignment explanation
Indices: 71225146--71225216 Score: 97
Period size: 16 Copynumber: 4.4 Consensus size: 16
71225136 GTTTGGTTCA
*
71225146 CTGTAATGGAATAGGG
1 CTGTAATGGAATAGAG
**
71225162 CTGTAATTAAATAGAG
1 CTGTAATGGAATAGAG
* *
71225178 CTGTAATTGAATATAG
1 CTGTAATGGAATAGAG
71225194 CTGTAATGGAATAGAG
1 CTGTAATGGAATAGAG
71225210 CTGTAAT
1 CTGTAAT
71225217 CAGTAATTCA
Statistics
Matches: 48, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 48 1.00
ACGTcount: A:0.37, C:0.07, G:0.25, T:0.31
Consensus pattern (16 bp):
CTGTAATGGAATAGAG
Found at i:71225481 original size:17 final size:17
Alignment explanation
Indices: 71225456--71225488 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
71225446 AATTATTATT
71225456 AAATATAATTTAATAAA
1 AAATATAATTTAATAAA
*
71225473 AAATTTAATTTAATAA
1 AAATATAATTTAATAA
71225489 CATTCTTAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (17 bp):
AAATATAATTTAATAAA
Found at i:71225959 original size:43 final size:43
Alignment explanation
Indices: 71225898--71225982 Score: 152
Period size: 43 Copynumber: 2.0 Consensus size: 43
71225888 TACAAATACA
71225898 TAAGGCAACCAATTTGATGCCTTTTCCAACTTGATACCCAACC
1 TAAGGCAACCAATTTGATGCCTTTTCCAACTTGATACCCAACC
* *
71225941 TAAGGCAACCAATTTGATGTCTTTTCTAACTTGATACCCAAC
1 TAAGGCAACCAATTTGATGCCTTTTCCAACTTGATACCCAAC
71225983 TAATTCCTAA
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.31, C:0.27, G:0.12, T:0.31
Consensus pattern (43 bp):
TAAGGCAACCAATTTGATGCCTTTTCCAACTTGATACCCAACC
Found at i:71230211 original size:68 final size:71
Alignment explanation
Indices: 71230080--71230238 Score: 243
Period size: 68 Copynumber: 2.3 Consensus size: 71
71230070 GGATAGAAGC
*
71230080 ATGAAAAAGAGAGAGATGGTTGGAAGGAAATGGGAAGAAGAATGAAAAAAAGAAGATGATTCAGA
1 ATGAAAAAGAGAGAGAAGGTTGGAAGGAAATGGG-AGAAGAATGAAAAAAAGAAGATGATTCAGA
71230145 CGTGACA
65 CGTGACA
* *
71230152 ATGAAAAAGAG-GAGAAGGTTGGAAGGAAAT-GG-GAAGAATGAAAAAAAGAAGTTGCTTCAGAC
1 ATGAAAAAGAGAGAGAAGGTTGGAAGGAAATGGGAGAAGAATGAAAAAAAGAAGATGATTCAGAC
*
71230214 GTGAGA
66 GTGACA
*
71230220 ACGAAAAAGAGAGAGAAGG
1 ATGAAAAAGAGAGAGAAGG
71230239 GTAAAGTTGA
Statistics
Matches: 81, Mismatches: 5, Indels: 5
0.89 0.05 0.05
Matches are distributed among these distances:
68 43 0.53
69 7 0.09
70 2 0.02
71 18 0.22
72 11 0.14
ACGTcount: A:0.50, C:0.04, G:0.33, T:0.13
Consensus pattern (71 bp):
ATGAAAAAGAGAGAGAAGGTTGGAAGGAAATGGGAGAAGAATGAAAAAAAGAAGATGATTCAGAC
GTGACA
Found at i:71232456 original size:21 final size:21
Alignment explanation
Indices: 71232432--71232471 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
71232422 AATTAGGGTC
71232432 ATAAT-TAATTAAAGTATTAAA
1 ATAATATAA-TAAAGTATTAAA
*
71232453 ATAATATAATAAGGTATTA
1 ATAATATAATAAAGTATTA
71232472 TTATATTAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 14 0.82
22 3 0.18
ACGTcount: A:0.55, C:0.00, G:0.07, T:0.38
Consensus pattern (21 bp):
ATAATATAATAAAGTATTAAA
Found at i:71244706 original size:12 final size:12
Alignment explanation
Indices: 71244684--71244716 Score: 59
Period size: 12 Copynumber: 2.8 Consensus size: 12
71244674 TTGAGACACA
71244684 CGACC-GTGTCT
1 CGACCTGTGTCT
71244695 CGACCTGTGTCT
1 CGACCTGTGTCT
71244707 CGACCTGTGT
1 CGACCTGTGT
71244717 AGTCAACACT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 5 0.24
12 16 0.76
ACGTcount: A:0.09, C:0.33, G:0.27, T:0.30
Consensus pattern (12 bp):
CGACCTGTGTCT
Found at i:71246548 original size:47 final size:49
Alignment explanation
Indices: 71246471--71246600 Score: 165
Period size: 49 Copynumber: 2.7 Consensus size: 49
71246461 GGTACGATGC
* * * *
71246471 CGATGCCATGTTCCAAACATGGTCTTACACTGGC-TT-AAACATCTAAGT
1 CGATGCCATGTCCCAGACA-GGTCTTACACTGACTTTCAAACATCGAAGT
* * * *
71246519 CGATGCCATGTCCCAGATAGGTCTTACACTGACTTTCATATATCGAGGT
1 CGATGCCATGTCCCAGACAGGTCTTACACTGACTTTCAAACATCGAAGT
71246568 CGATGCCATGTCCCAGACAGGTCTTACACTGAC
1 CGATGCCATGTCCCAGACAGGTCTTACACTGAC
71246601 ACGACCATGT
Statistics
Matches: 71, Mismatches: 9, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
47 13 0.18
48 18 0.25
49 40 0.56
ACGTcount: A:0.26, C:0.27, G:0.19, T:0.28
Consensus pattern (49 bp):
CGATGCCATGTCCCAGACAGGTCTTACACTGACTTTCAAACATCGAAGT
Found at i:71246706 original size:129 final size:129
Alignment explanation
Indices: 71246476--71246727 Score: 450
Period size: 129 Copynumber: 2.0 Consensus size: 129
71246466 GATGCCGATG
*
71246476 CCATGTTCCAAACATGGTCTTACACTGGCTTAAACATCTAAGTCGATGCCATGTCCCAGATAGGT
1 CCATGTTCCAAACATGGTCTTACACTGGCTTAAACATCTAAGTCGATGCCATGTCCCAGACAGGT
* *
71246541 CTTACACTGACTTTCATATATCGAGGTCGATGCCATGTCCCAGACAGGTCTTACACTGACACGA
66 CTTACACTGACTTCCATATATCGAGGCCGATGCCATGTCCCAGACAGGTCTTACACTGACACGA
*
71246605 CCATGTTCCAAACATGGTCTTACACTGGCTTACACATCTAAGTCGATGCCATGTCCCAGACAGGT
1 CCATGTTCCAAACATGGTCTTACACTGGCTTAAACATCTAAGTCGATGCCATGTCCCAGACAGGT
* *
71246670 CTTTCATTGACTTCCATATATCGAGGCCGATGCCATGTCCCAGACAGGTCTTACACTG
66 CTTACACTGACTTCCATATATCGAGGCCGATGCCATGTCCCAGACAGGTCTTACACTG
71246728 GCTCTCATCT
Statistics
Matches: 117, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
129 117 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.27
Consensus pattern (129 bp):
CCATGTTCCAAACATGGTCTTACACTGGCTTAAACATCTAAGTCGATGCCATGTCCCAGACAGGT
CTTACACTGACTTCCATATATCGAGGCCGATGCCATGTCCCAGACAGGTCTTACACTGACACGA
Found at i:71246904 original size:46 final size:45
Alignment explanation
Indices: 71246796--71246962 Score: 169
Period size: 46 Copynumber: 3.6 Consensus size: 45
71246786 AAGCTGACGC
* * * *
71246796 CATGTCCTAGACATGTCTTACACTAGCT-TGTATATCTCGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCT-CATA---AGTGGCCGATG
* * *
71246844 CATGTCCCAGACATGTCTTATACTAGCTCTCGTCTCAA-T-GCTGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCTC--AT-AAGTGGCCGATG
*
71246890 CATGTCCCAGACATGTCTTACACTGGCTCTCATAATGTGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCTCATAA-GTGGCCGATG
71246936 CATGTCCCAGACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
71246963 ACACATATCA
Statistics
Matches: 100, Mismatches: 12, Indels: 16
0.78 0.09 0.12
Matches are distributed among these distances:
43 2 0.02
44 1 0.01
45 1 0.01
46 67 0.67
48 26 0.26
49 1 0.01
50 1 0.01
51 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.19, T:0.30
Consensus pattern (45 bp):
CATGTCCCAGACATGTCTTACACTAGCTCTCATAAGTGGCCGATG
Found at i:71252842 original size:46 final size:46
Alignment explanation
Indices: 71252689--71253051 Score: 186
Period size: 47 Copynumber: 7.7 Consensus size: 46
71252679 TTGGTGTGCT
* * * *
71252689 AGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGTGACGAGAGCC
* * ** * * *
71252735 AGTGTAAGACCATGTCTGGGACATGGTATCAGTATTGAGACGAGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGTGACGAGAGCC
* *
71252783 AGTGTAAGACATGTCTGGGACATACATCGGCCTCGTGCCGTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGTGACG-AGAGCC
* * *
71252829 AGTGTAAGACATGTCTGGGACATGCATTGG-CTAC--G-CGATGTGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGTGACGA-GAGCC
* * * * *
71252873 AGTGTAAGACCCTGTCTGGGACATGGCATTGG-CACGAAT-ATGTGAGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCG--TGA--CGAGAGCC
* * * *** * *
71252923 AGTGTAAGACCATGTCTGGGACATGGCGTCGACCTCAATTTTGATAGTC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTC-GTGACGAGAGCC
* * *
71252972 AGTGTAAGACCATGTCTGGGACATGGCATC-GACTTGATGA-AAGAGCC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCG-TGACGAGAGCC
* *
71253019 AGTGTAAGACCATGTCTGGAATATGGCATCGGC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
71253052 ATTATACCCT
Statistics
Matches: 244, Mismatches: 53, Indels: 38
0.73 0.16 0.11
Matches are distributed among these distances:
42 1 0.00
43 2 0.01
44 12 0.05
45 16 0.07
46 58 0.24
47 61 0.25
48 25 0.10
49 34 0.14
50 31 0.13
51 4 0.02
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.24
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGTGACGAGAGCC
Found at i:71252986 original size:49 final size:50
Alignment explanation
Indices: 71252870--71253004 Score: 168
Period size: 49 Copynumber: 2.7 Consensus size: 50
71252860 TACGCGATGT
* * * *
71252870 GTCAGTGTAAGACCCTGTCTGGGACATGGCATTGGCACGAATATGTGAGA
1 GTCAGTGTAAGACCATGTCTGGGACATGGCATCGACACCAATATGTGAGA
* * *
71252920 G-CTAGTGTAAGACCATGTCTGGGACATGGCGTCGAC-CTCAAT-TTTGATA
1 GTC-AGTGTAAGACCATGTCTGGGACATGGCATCGACAC-CAATATGTGAGA
71252969 GTCAGTGTAAGACCATGTCTGGGACATGGCATCGAC
1 GTCAGTGTAAGACCATGTCTGGGACATGGCATCGAC
71253005 TTGATGAAAG
Statistics
Matches: 74, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
49 40 0.54
50 34 0.46
ACGTcount: A:0.25, C:0.20, G:0.30, T:0.25
Consensus pattern (50 bp):
GTCAGTGTAAGACCATGTCTGGGACATGGCATCGACACCAATATGTGAGA
Found at i:71254675 original size:21 final size:22
Alignment explanation
Indices: 71254651--71254701 Score: 59
Period size: 26 Copynumber: 2.2 Consensus size: 22
71254641 AGTTTGCGTG
71254651 TAGTG-TATGTCGAAACTATAA
1 TAGTGCTATGTCGAAACTATAA
71254672 TAGTATCTGCTATGTCGAAACTATAA
1 TAG----TGCTATGTCGAAACTATAA
71254698 TAGT
1 TAGT
71254702 ATCCGCTCGA
Statistics
Matches: 25, Mismatches: 0, Indels: 9
0.74 0.00 0.26
Matches are distributed among these distances:
21 3 0.12
22 1 0.04
25 2 0.08
26 19 0.76
ACGTcount: A:0.35, C:0.12, G:0.18, T:0.35
Consensus pattern (22 bp):
TAGTGCTATGTCGAAACTATAA
Found at i:71261311 original size:16 final size:17
Alignment explanation
Indices: 71261289--71261331 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 17
71261279 ATGTTCAATT
71261289 TCATATACAA-TTT-AA
1 TCATATACAATTTTCAA
71261304 TACATATATCAATTTTCAA
1 T-CATATA-CAATTTTCAA
71261323 TCATATACA
1 TCATATACA
71261332 TGTTAAAATT
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
15 1 0.04
16 6 0.25
17 5 0.21
18 9 0.38
19 3 0.12
ACGTcount: A:0.44, C:0.16, G:0.00, T:0.40
Consensus pattern (17 bp):
TCATATACAATTTTCAA
Found at i:71261897 original size:65 final size:66
Alignment explanation
Indices: 71261823--71261958 Score: 256
Period size: 65 Copynumber: 2.1 Consensus size: 66
71261813 CCTTCACTTG
71261823 GTCTTTTCACTAAATTTGAAGAAAGAATTGCCATTGCTAGGGCTTGAAGGTTCGGTTGGGTTCTT
1 GTCTTTTCACTAAATTTGAAGAAAGAATTGCCATTGCTAGGGCTTGAAGGTTCGGTTGGGTTCTT
71261888 T
66 T
*
71261889 -TCTTTTCACTGAATTTGAAGAAAGAATTGCCATTGCTAGGGCTTGAAGGTTCGGTTGGGTTCTT
1 GTCTTTTCACTAAATTTGAAGAAAGAATTGCCATTGCTAGGGCTTGAAGGTTCGGTTGGGTTCTT
71261953 T
66 T
71261954 GTCTT
1 GTCTT
71261959 GCATGTAAGT
Statistics
Matches: 68, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
65 64 0.94
66 4 0.06
ACGTcount: A:0.21, C:0.14, G:0.26, T:0.39
Consensus pattern (66 bp):
GTCTTTTCACTAAATTTGAAGAAAGAATTGCCATTGCTAGGGCTTGAAGGTTCGGTTGGGTTCTT
T
Found at i:71272154 original size:48 final size:47
Alignment explanation
Indices: 71272062--71272377 Score: 199
Period size: 46 Copynumber: 6.7 Consensus size: 47
71272052 TTTGTGCGCT
*
71272062 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCA-C-ATTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGG-CATCGA-GA-GAGAGCC
* * *
71272108 AGTGTAAGACCATGTCTGAGACATGGCATCGGCATTGAGACGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGAGA-GAGAGCC
* *
71272156 AGTGTAAGA-CATGTCTGGGACAT-GCATTGGCCTCGAGATGTA-AGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGAGA-G-AGAGCC
* * * * * *
71272202 AGTGTGAGA-CATGTCTAGGACAT-GCATCAGCCA-CGAGA-TGTGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATC-GGCATCGAGAGAGAGCC
* * * * *
71272246 AGTGTAAGACCATGTTTGGGAAATGGCATCGGCAT-GTATAGAGGTGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATCG-AGAGA-GAGCC
* ** * * * **
71272294 AGTGTAAGACCATGACTGGGACATGGTGTCAGCCTCGA-ATTCGATAGTT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGAGA---GAGAGCC
*
71272343 AGTGTAAGACCATGTCTGGGACATGGCATCAGCAT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCAT
71272378 TACACCCTAT
Statistics
Matches: 213, Mismatches: 40, Indels: 31
0.75 0.14 0.11
Matches are distributed among these distances:
44 10 0.05
45 15 0.07
46 62 0.29
47 32 0.15
48 57 0.27
49 35 0.16
50 2 0.01
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.24
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGAGAGAGAGCC
Found at i:71272216 original size:46 final size:46
Alignment explanation
Indices: 71272062--71272278 Score: 210
Period size: 46 Copynumber: 4.7 Consensus size: 46
71272052 TTTGTGCGCT
*
71272062 AGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACGA-GATGAGAGCC
* * * *
71272108 AGTGTAAGACCATGTCTGAGACATGGCATCGG-CATTGAGACGAGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCA-CGAGATGAGAGCC
* *
71272156 AGTGTAAGACATGTCTGGGACATGCATTGGCCTCGAGATGTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACGAGATG-AGAGCC
* * * * *
71272202 AGTGTGAGACATGTCTAGGACATGCATCAGCCACGAGAT--GTGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACGAGATGAGAGCC
* *
71272246 AGTGTAAGACCATGTTTGGGAAATGGCATCGGC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
71272279 ATGTATAGAG
Statistics
Matches: 139, Mismatches: 23, Indels: 18
0.77 0.13 0.10
Matches are distributed among these distances:
44 10 0.07
45 11 0.08
46 64 0.46
47 30 0.22
48 23 0.17
49 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCACGAGATGAGAGCC
Found at i:71273557 original size:20 final size:21
Alignment explanation
Indices: 71273518--71273557 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
71273508 GTTATAATGA
71273518 TCACACGGGCGTGTTGCCCTT
1 TCACACGGGCGTGTTGCCCTT
*
71273539 TCACACGGGTGTG-TGCCCT
1 TCACACGGGCGTGTTGCCCT
71273558 GTTTCTAGAG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.10, C:0.33, G:0.30, T:0.28
Consensus pattern (21 bp):
TCACACGGGCGTGTTGCCCTT
Found at i:71280123 original size:20 final size:20
Alignment explanation
Indices: 71280098--71280140 Score: 77
Period size: 20 Copynumber: 2.1 Consensus size: 20
71280088 TGTGAATGAG
*
71280098 GCATACGCCCGTGCAAAGAA
1 GCATACGCCCATGCAAAGAA
71280118 GCATACGCCCATGCAAAGAA
1 GCATACGCCCATGCAAAGAA
71280138 GCA
1 GCA
71280141 CACACTCGTG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.37, C:0.30, G:0.23, T:0.09
Consensus pattern (20 bp):
GCATACGCCCATGCAAAGAA
Found at i:71287148 original size:12 final size:13
Alignment explanation
Indices: 71287126--71287155 Score: 53
Period size: 12 Copynumber: 2.4 Consensus size: 13
71287116 CTACATGAGT
71287126 TTTTGTTTTTTTG
1 TTTTGTTTTTTTG
71287139 TTTT-TTTTTTTG
1 TTTTGTTTTTTTG
71287151 TTTTG
1 TTTTG
71287156 AGTTACTACT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
12 12 0.75
13 4 0.25
ACGTcount: A:0.00, C:0.00, G:0.13, T:0.87
Consensus pattern (13 bp):
TTTTGTTTTTTTG
Found at i:71287444 original size:15 final size:15
Alignment explanation
Indices: 71287424--71287453 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
71287414 ATCACGTTGA
*
71287424 ATTTTAAAAATTATT
1 ATTTTAAAAAATATT
71287439 ATTTTAAAAAATATT
1 ATTTTAAAAAATATT
71287454 TAATAGTACT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (15 bp):
ATTTTAAAAAATATT
Found at i:71288776 original size:23 final size:23
Alignment explanation
Indices: 71288741--71288784 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
71288731 CCAGTTTGAT
* *
71288741 TAAATAAATTATTTCAAAAATCA
1 TAAAAAAAATATTTCAAAAATCA
*
71288764 TAAAAAAAATATTTTAAAAAT
1 TAAAAAAAATATTTCAAAAAT
71288785 AGACAAATGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.61, C:0.05, G:0.00, T:0.34
Consensus pattern (23 bp):
TAAAAAAAATATTTCAAAAATCA
Found at i:71294867 original size:3 final size:3
Alignment explanation
Indices: 71294859--71294899 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
71294849 AAATAGATAC
71294859 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
71294900 TTAGACAGAA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:71295539 original size:68 final size:68
Alignment explanation
Indices: 71295392--71295581 Score: 215
Period size: 68 Copynumber: 2.8 Consensus size: 68
71295382 TGACAGTTTT
* * ** *
71295392 TTCACTACTTTCATT-AAAAGATTAGTTTTAA-TCCACATTGATTAAACAATACT-TTATAGCTC
1 TTCACTACTTTCATTAAAAAG-TTAGTTTTAATTCCACATTGACT-AAGAATACTCACATAACTC
71295454 ACTTC
64 ACTTC
* * *
71295459 TTCGCTACTTTCATTAAAAAGTTAGTTTTAATTCCACATTGGCTAAGAATACTCACATAACTTAC
1 TTCACTACTTTCATTAAAAAGTTAGTTTTAATTCCACATTGACTAAGAATACTCACATAACTCAC
71295524 TTC
66 TTC
* * * * *
71295527 TTCACTATTTTCATTAAAAAGTTAATTTTAATCCCATATTAACTAGAGAATACTC
1 TTCACTACTTTCATTAAAAAGTTAGTTTTAATTCCACATTGACTA-AGAATACTC
71295582 TTAATTCCAC
Statistics
Matches: 104, Mismatches: 15, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
67 32 0.31
68 63 0.61
69 9 0.09
ACGTcount: A:0.35, C:0.19, G:0.07, T:0.39
Consensus pattern (68 bp):
TTCACTACTTTCATTAAAAAGTTAGTTTTAATTCCACATTGACTAAGAATACTCACATAACTCAC
TTC
Found at i:71301097 original size:3 final size:3
Alignment explanation
Indices: 71301089--71301170 Score: 78
Period size: 3 Copynumber: 27.3 Consensus size: 3
71301079 TATATTTCAC
* * * *
71301089 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT CAT TAA TGT T-T CAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* *
71301136 TAC TAGT TAT TAT TAT T-T CTAG TAT TAT TAT TAT T
1 TAT TA-T TAT TAT TAT TAT -TAT TAT TAT TAT TAT T
71301171 TAATATTAGT
Statistics
Matches: 64, Mismatches: 11, Indels: 8
0.77 0.13 0.10
Matches are distributed among these distances:
2 2 0.03
3 60 0.94
4 2 0.03
ACGTcount: A:0.30, C:0.05, G:0.04, T:0.61
Consensus pattern (3 bp):
TAT
Done.