Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 220 of 349
Found at i:71932710 original size:51 final size:52
Alignment explanation
Indices: 71932610--71932712 Score: 131
Period size: 52 Copynumber: 2.0 Consensus size: 52
71932600 AATATATTTT
* * *
71932610 TTAATTTTTTTAAGATTGAGATCAAATTAGAAATATTTGTAAAATTTGAGAG
1 TTAATTTTTTTAAAATTGAGATCAAATTAGAAATATATGTAAAAGTTGAGAG
*
71932662 TTAATTTTTTTAAAATT-ATGAGT-AAATT-GATATATATGTAAAAGTTGAGAG
1 TTAATTTTTTTAAAATTGA-GA-TCAAATTAGAAATATATGTAAAAGTTGAGAG
71932713 CTAAATTTGT
Statistics
Matches: 45, Mismatches: 4, Indels: 5
0.83 0.07 0.09
Matches are distributed among these distances:
51 21 0.47
52 23 0.51
53 1 0.02
ACGTcount: A:0.41, C:0.01, G:0.16, T:0.43
Consensus pattern (52 bp):
TTAATTTTTTTAAAATTGAGATCAAATTAGAAATATATGTAAAAGTTGAGAG
Found at i:71947791 original size:3 final size:3
Alignment explanation
Indices: 71947783--71947815 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
71947773 TAAAATCCAA
71947783 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
71947816 GAGATTAATT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:71951371 original size:47 final size:50
Alignment explanation
Indices: 71951255--71951386 Score: 173
Period size: 47 Copynumber: 2.7 Consensus size: 50
71951245 GAATATGCGA
* * * *
71951255 GAGCTAGTGTAAGAACATGTCTGGGACATGGCGTCGGACTTGATGACAAT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGAACTTGATGACAAT
* *
71951305 -AGTCAGTGTAAGACCATGTCTGGGACATGGCATC-AACTTGA-GA-TAT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGAACTTGATGACAAT
*
71951351 GAGCCAGTGTAAGACCATGTCTAGGACATGGCATCG
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCG
71951387 GTATCATACC
Statistics
Matches: 72, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
46 2 0.03
47 34 0.47
48 6 0.08
49 30 0.42
ACGTcount: A:0.29, C:0.18, G:0.30, T:0.23
Consensus pattern (50 bp):
GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGAACTTGATGACAAT
Found at i:71952365 original size:21 final size:22
Alignment explanation
Indices: 71952326--71952366 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
71952316 TCAAATTGGT
71952326 CACACGGGCGTGTTGCCCCTCC
1 CACACGGGCGTGTTGCCCCTCC
*
71952348 CACATGGGCGTG-TGCCCCT
1 CACACGGGCGTGTTGCCCCT
71952367 GTGTCAAGTG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.10, C:0.41, G:0.29, T:0.20
Consensus pattern (22 bp):
CACACGGGCGTGTTGCCCCTCC
Found at i:71957087 original size:27 final size:27
Alignment explanation
Indices: 71957048--71957202 Score: 150
Period size: 27 Copynumber: 5.7 Consensus size: 27
71957038 AAATGAAAAC
*
71957048 AAAGAATAGCCTTTGTGGCGAACTCTG
1 AAAGAATAACCTTTGTGGCGAACTCTG
*
71957075 AAAGAATAACCTTTGTAGC-AAGCTCTG
1 AAAGAATAACCTTTGTGGCGAA-CTCTG
* *
71957102 AAAGAATAACCTCTATGGCGAACTCTG
1 AAAGAATAACCTTTGTGGCGAACTCTG
* * ** *
71957129 AAAGAACAGCCTTTGTCACGAACTCTA
1 AAAGAATAACCTTTGTGGCGAACTCTG
** * *
71957156 AAAGAATAACCTTTGCAGTGAACTTTG
1 AAAGAATAACCTTTGTGGCGAACTCTG
* **
71957183 AAAGAAAAAATTTTGTGGCG
1 AAAGAATAACCTTTGTGGCG
71957203 TGTTCCATTG
Statistics
Matches: 100, Mismatches: 26, Indels: 4
0.77 0.20 0.03
Matches are distributed among these distances:
26 2 0.02
27 96 0.96
28 2 0.02
ACGTcount: A:0.37, C:0.18, G:0.20, T:0.25
Consensus pattern (27 bp):
AAAGAATAACCTTTGTGGCGAACTCTG
Found at i:71960229 original size:19 final size:19
Alignment explanation
Indices: 71960205--71960243 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
71960195 AATAAGAGTT
71960205 ATACAATATCCAAACAATA
1 ATACAATATCCAAACAATA
71960224 ATACAATATCCAAACAATA
1 ATACAATATCCAAACAATA
71960243 A
1 A
71960244 CAATAAAATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.59, C:0.21, G:0.00, T:0.21
Consensus pattern (19 bp):
ATACAATATCCAAACAATA
Found at i:71961064 original size:16 final size:16
Alignment explanation
Indices: 71961043--71961073 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
71961033 AAAAAATGTA
*
71961043 AATTAATTAATTTTTC
1 AATTAAATAATTTTTC
71961059 AATTAAATAATTTTT
1 AATTAAATAATTTTT
71961074 TCGATCTAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.55
Consensus pattern (16 bp):
AATTAAATAATTTTTC
Found at i:71967149 original size:31 final size:31
Alignment explanation
Indices: 71967114--71967175 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
71967104 AATTTTGATG
71967114 AAAAATTCTGAAATTTTATGAATACATGTGC
1 AAAAATTCTGAAATTTTATGAATACATGTGC
71967145 AAAAATTCTGAAATTTTATGAATACATGTGC
1 AAAAATTCTGAAATTTTATGAATACATGTGC
71967176 TGTAAAATTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.42, C:0.10, G:0.13, T:0.35
Consensus pattern (31 bp):
AAAAATTCTGAAATTTTATGAATACATGTGC
Found at i:71981966 original size:49 final size:47
Alignment explanation
Indices: 71981851--71982027 Score: 198
Period size: 47 Copynumber: 3.7 Consensus size: 47
71981841 GGTATAATGC
* * * * * *
71981851 CGATGCCATGTCTCAAACATGGTCTTACACTGGCTCATC-CATCAAGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACT-ATCAAATCGAGG
71981898 CGATGCCATGTCCCAGACATGGTCTTACACTGACTATCGAAATCGAGG
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACTATC-AAATCGAGG
* * * *
71981946 CTGACGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT-GTGG
1 C-GATGCCATGTCCCAGACATGGTCTTACACTGACTATCA-AATCGAGG
71981994 CCGATG-CATGTCCCAGACATGGTCTTACACTGAC
1 -CGATGCCATGTCCCAGACATGGTCTTACACTGAC
71982028 ACACAAATAA
Statistics
Matches: 113, Mismatches: 12, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
46 3 0.03
47 59 0.52
48 13 0.12
49 38 0.34
ACGTcount: A:0.24, C:0.29, G:0.21, T:0.25
Consensus pattern (47 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGACTATCAAATCGAGG
Found at i:71983754 original size:18 final size:18
Alignment explanation
Indices: 71983710--71983745 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
71983700 TTTATAGATC
71983710 GAATAATAGTCATTTCAT
1 GAATAATAGTCATTTCAT
71983728 GAATAATAGTCATTTCAT
1 GAATAATAGTCATTTCAT
71983746 ATCATATAGC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.39, C:0.11, G:0.11, T:0.39
Consensus pattern (18 bp):
GAATAATAGTCATTTCAT
Found at i:71985281 original size:21 final size:21
Alignment explanation
Indices: 71985240--71985449 Score: 149
Period size: 21 Copynumber: 10.1 Consensus size: 21
71985230 ACATTGTTAG
* *
71985240 CAGAAGCTC-GAA-AGCTGAA
1 CAGAAGCTCATAAGAGCTAAA
*
71985259 CAGAAGCTCATGAGAGCTAAA
1 CAGAAGCTCATAAGAGCTAAA
* * * * *
71985280 CAGAAACCCATAAGGGTTGAA
1 CAGAAGCTCATAAGAGCTAAA
*
71985301 CAGAAGCTCATAAGAGCTTAA
1 CAGAAGCTCATAAGAGCTAAA
* *
71985322 CAGAAGCCCATAAGGGCTAAA
1 CAGAAGCTCATAAGAGCTAAA
* *
71985343 CAGAAGCTCGTAAGAGCTGAA
1 CAGAAGCTCATAAGAGCTAAA
* * * * *
71985364 CAGAAACCCATCAGGGTTAAA
1 CAGAAGCTCATAAGAGCTAAA
*
71985385 CAGAAGCTCA-ATAGAGCTGAA
1 CAGAAGCTCATA-AGAGCTAAA
* * * *
71985406 CAGAAACTCGTATGAGTTAAA
1 CAGAAGCTCATAAGAGCTAAA
* *
71985427 CAGAAACTCGTGAA-AGCTAAA
1 CAGAAGCTCAT-AAGAGCTAAA
71985448 CA
1 CA
71985450 AAAACTAAAC
Statistics
Matches: 145, Mismatches: 41, Indels: 8
0.75 0.21 0.04
Matches are distributed among these distances:
19 9 0.06
20 1 0.01
21 133 0.92
22 2 0.01
ACGTcount: A:0.43, C:0.20, G:0.22, T:0.15
Consensus pattern (21 bp):
CAGAAGCTCATAAGAGCTAAA
Found at i:71985302 original size:42 final size:42
Alignment explanation
Indices: 71985257--71985454 Score: 220
Period size: 42 Copynumber: 4.7 Consensus size: 42
71985247 TCGAAAGCTG
* *
71985257 AACAGAAGCTCATGAGAGCTAAACAGAAACCCATAAGGGTTG
1 AACAGAAGCTCATAAGAGCTAAACAGAAACCCATAAGGGTTA
* * *
71985299 AACAGAAGCTCATAAGAGCTTAACAGAAGCCCATAAGGGCTA
1 AACAGAAGCTCATAAGAGCTAAACAGAAACCCATAAGGGTTA
* * *
71985341 AACAGAAGCTCGTAAGAGCTGAACAGAAACCCATCAGGGTTA
1 AACAGAAGCTCATAAGAGCTAAACAGAAACCCATAAGGGTTA
* * * * *
71985383 AACAGAAGCTCA-ATAGAGCTGAACAGAAACTCGTATGAGTTA
1 AACAGAAGCTCATA-AGAGCTAAACAGAAACCCATAAGGGTTA
* * *
71985425 AACAGAAACTCGTGAA-AGCTAAACAAAAAC
1 AACAGAAGCTCAT-AAGAGCTAAACAGAAAC
71985455 TAAACACAAA
Statistics
Matches: 133, Mismatches: 20, Indels: 6
0.84 0.13 0.04
Matches are distributed among these distances:
41 1 0.01
42 130 0.98
43 1 0.01
44 1 0.01
ACGTcount: A:0.44, C:0.20, G:0.21, T:0.15
Consensus pattern (42 bp):
AACAGAAGCTCATAAGAGCTAAACAGAAACCCATAAGGGTTA
Found at i:71985387 original size:63 final size:63
Alignment explanation
Indices: 71985252--71985433 Score: 188
Period size: 63 Copynumber: 2.9 Consensus size: 63
71985242 GAAGCTCGAA
* * * * * * *
71985252 AGCTGAACAGAAGCTCATGAGAGCTAAACAGAAACCCATAAGGGTTGAACAGAAGCTCATAAG
1 AGCTTAACAGAAGCTCATAAGAGCTAAACAGAAACTCGTAAGAGTTGAACAGAAACCCATAAG
* * * * *
71985315 AGCTTAACAGAAGCCCATAAGGGCTAAACAGAAGCTCGTAAGAGCTGAACAGAAACCCATCAG
1 AGCTTAACAGAAGCTCATAAGAGCTAAACAGAAACTCGTAAGAGTTGAACAGAAACCCATAAG
* * * *
71985378 -GGTTAAACAGAAGCTCA-ATAGAGCTGAACAGAAACTCGTATGAGTTAAACAGAAAC
1 AGCTT-AACAGAAGCTCATA-AGAGCTAAACAGAAACTCGTAAGAGTTGAACAGAAAC
71985434 TCGTGAAAGC
Statistics
Matches: 97, Mismatches: 20, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
62 4 0.04
63 93 0.96
ACGTcount: A:0.43, C:0.20, G:0.23, T:0.15
Consensus pattern (63 bp):
AGCTTAACAGAAGCTCATAAGAGCTAAACAGAAACTCGTAAGAGTTGAACAGAAACCCATAAG
Found at i:71986519 original size:26 final size:27
Alignment explanation
Indices: 71986490--71986543 Score: 92
Period size: 27 Copynumber: 2.0 Consensus size: 27
71986480 TTTGTTGACA
*
71986490 TAACTC-AAATTCTATTTTTTTTCACT
1 TAACTCAAAATTCTATTTTTTGTCACT
71986516 TAACTCAAAATTCTATTTTTTGTCACT
1 TAACTCAAAATTCTATTTTTTGTCACT
71986543 T
1 T
71986544 TATTTCCTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
26 6 0.23
27 20 0.77
ACGTcount: A:0.28, C:0.19, G:0.02, T:0.52
Consensus pattern (27 bp):
TAACTCAAAATTCTATTTTTTGTCACT
Found at i:71988230 original size:75 final size:75
Alignment explanation
Indices: 71988103--71988262 Score: 302
Period size: 75 Copynumber: 2.1 Consensus size: 75
71988093 TAACTTAGGT
71988103 CACACGGCCAAGCCACACGCCCGTGTGCTAGGCTGTGTGAGCATTCTCTTTTGTGCAAATTTAAG
1 CACACGGCCAAGCCACACGCCCGTGTGCTAGGCTGTGTGAGCATTCTCTTTTGTGCAAATTTAAG
71988168 ATATAGGGGA
66 ATATAGGGGA
* *
71988178 CACACGGCCAAGCCACACGCCCGTGTGCTAGGCTGTGTGAGCATTCTGTTTTGTGCCAATTTAAG
1 CACACGGCCAAGCCACACGCCCGTGTGCTAGGCTGTGTGAGCATTCTCTTTTGTGCAAATTTAAG
71988243 ATATAGGGGA
66 ATATAGGGGA
71988253 CACACGGCCA
1 CACACGGCCA
71988263 TGTCACCTAA
Statistics
Matches: 83, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
75 83 1.00
ACGTcount: A:0.24, C:0.26, G:0.27, T:0.24
Consensus pattern (75 bp):
CACACGGCCAAGCCACACGCCCGTGTGCTAGGCTGTGTGAGCATTCTCTTTTGTGCAAATTTAAG
ATATAGGGGA
Found at i:71989457 original size:21 final size:21
Alignment explanation
Indices: 71989400--71989578 Score: 110
Period size: 21 Copynumber: 8.5 Consensus size: 21
71989390 TCGAAAGCTG
* * *
71989400 AACAGAAGCTCATGAGAGCTA
1 AACAGAAACTCATAAGGGCTA
* * * *
71989421 AACGGAAACCCATAAGGGTTG
1 AACAGAAACTCATAAGGGCTA
* * *
71989442 AACAGAAGCTCATAAGAGCTT
1 AACAGAAACTCATAAGGGCTA
*
71989463 AACAGAAACCCATAAGGGCTA
1 AACAGAAACTCATAAGGGCTA
* * *
71989484 AACA-AAAGCTCGTAAGAGCTG
1 AACAGAAA-CTCATAAGGGCTA
* * *
71989505 AACAGAAACCCATCAGGGTTA
1 AACAGAAACTCATAAGGGCTA
* * * *
71989526 AACAGCAGCTTA-ATAGGGCTG
1 AACAGAAACTCATA-AGGGCTA
* * *
71989547 AACAGAAACTCATATGAGTTA
1 AACAGAAACTCATAAGGGCTA
71989568 AACAGAAACTC
1 AACAGAAACTC
71989579 GTGAAAGCTA
Statistics
Matches: 113, Mismatches: 41, Indels: 8
0.70 0.25 0.05
Matches are distributed among these distances:
20 3 0.03
21 106 0.94
22 4 0.04
ACGTcount: A:0.43, C:0.20, G:0.21, T:0.16
Consensus pattern (21 bp):
AACAGAAACTCATAAGGGCTA
Found at i:71989460 original size:42 final size:42
Alignment explanation
Indices: 71989400--71989595 Score: 191
Period size: 42 Copynumber: 4.7 Consensus size: 42
71989390 TCGAAAGCTG
* * *
71989400 AACAGAAGCTCATGAGAGCTAAACGGAAACCCATAAGGGTTG
1 AACAGAAGCTCATAAGAGCTAAACAGAAACCCATAAGGGTTA
* *
71989442 AACAGAAGCTCATAAGAGCTTAACAGAAACCCATAAGGGCTA
1 AACAGAAGCTCATAAGAGCTAAACAGAAACCCATAAGGGTTA
* * * *
71989484 AACAAAAGCTCGTAAGAGCTGAACAGAAACCCATCAGGGTTA
1 AACAGAAGCTCATAAGAGCTAAACAGAAACCCATAAGGGTTA
* * * * * * *
71989526 AACAGCAGCTTA-ATAGGGCTGAACAGAAACTCATATGAGTTA
1 AACAGAAGCTCATA-AGAGCTAAACAGAAACCCATAAGGGTTA
* *
71989568 AACAGAAACTCGTGAA-AGCTAAAC-GAAA
1 AACAGAAGCTCAT-AAGAGCTAAACAGAAA
71989596 AGTAAACACA
Statistics
Matches: 126, Mismatches: 25, Indels: 7
0.80 0.16 0.04
Matches are distributed among these distances:
41 5 0.04
42 119 0.94
43 1 0.01
44 1 0.01
ACGTcount: A:0.44, C:0.19, G:0.21, T:0.15
Consensus pattern (42 bp):
AACAGAAGCTCATAAGAGCTAAACAGAAACCCATAAGGGTTA
Found at i:71991414 original size:23 final size:25
Alignment explanation
Indices: 71991362--71991420 Score: 74
Period size: 23 Copynumber: 2.5 Consensus size: 25
71991352 ATATTATAAA
71991362 AATATTAT-TTAATTAAAACATTAT
1 AATATTATATTAATTAAAACATTAT
71991386 AA-ATTATATTAATT-AAA-ATTA-
1 AATATTATATTAATTAAAACATTAT
71991407 AGATATTATATTAA
1 A-ATATTATATTAA
71991421 AGAAAATAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
21 1 0.03
22 5 0.16
23 18 0.56
24 8 0.25
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.44
Consensus pattern (25 bp):
AATATTATATTAATTAAAACATTAT
Found at i:71991415 original size:30 final size:27
Alignment explanation
Indices: 71991352--71991416 Score: 67
Period size: 30 Copynumber: 2.3 Consensus size: 27
71991342 TTCTTGATTT
*
71991352 ATATTATAAAAATATTATTTAATTAAA
1 ATATTATAAAAATATTATTAAATTAAA
* * *
71991379 ACATTATAAATTATATTAATTAAAATTAAG
1 ATATTATAAA-AATATT-ATT-AAATTAAA
71991409 ATATTATA
1 ATATTATA
71991417 TTAAAGAAAA
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
27 9 0.30
28 5 0.17
29 3 0.10
30 13 0.43
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.43
Consensus pattern (27 bp):
ATATTATAAAAATATTATTAAATTAAA
Found at i:71993760 original size:40 final size:40
Alignment explanation
Indices: 71993714--71993792 Score: 158
Period size: 40 Copynumber: 2.0 Consensus size: 40
71993704 TTCAGATATT
71993714 CCATATCGACCATTCGAACTTTCAATGATATAACTTAGTA
1 CCATATCGACCATTCGAACTTTCAATGATATAACTTAGTA
71993754 CCATATCGACCATTCGAACTTTCAATGATATAACTTAGT
1 CCATATCGACCATTCGAACTTTCAATGATATAACTTAGT
71993793 CAAATTAAAA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.34, C:0.23, G:0.10, T:0.33
Consensus pattern (40 bp):
CCATATCGACCATTCGAACTTTCAATGATATAACTTAGTA
Found at i:71994920 original size:24 final size:24
Alignment explanation
Indices: 71994888--71994936 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
71994878 AATACTTTAA
71994888 CAATTTTGAAATGGGAGGTACGGG
1 CAATTTTGAAATGGGAGGTACGGG
71994912 CAATTTTGAAATGGGAGGTACGGG
1 CAATTTTGAAATGGGAGGTACGGG
71994936 C
1 C
71994937 TAGCTAGATT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.29, C:0.10, G:0.37, T:0.24
Consensus pattern (24 bp):
CAATTTTGAAATGGGAGGTACGGG
Found at i:71995743 original size:19 final size:19
Alignment explanation
Indices: 71995705--71995745 Score: 57
Period size: 19 Copynumber: 2.1 Consensus size: 19
71995695 TGATTTGCTT
71995705 TCACTAGCCTCATCAATTTC
1 TCACTAGCCTCA-CAATTTC
71995725 TCACATAGCCTCA-AATTTC
1 TCAC-TAGCCTCACAATTTC
71995744 TC
1 TC
71995746 GACTTTTCAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 8 0.40
20 4 0.20
21 8 0.40
ACGTcount: A:0.27, C:0.34, G:0.05, T:0.34
Consensus pattern (19 bp):
TCACTAGCCTCACAATTTC
Found at i:72000882 original size:40 final size:40
Alignment explanation
Indices: 72000836--72000914 Score: 158
Period size: 40 Copynumber: 2.0 Consensus size: 40
72000826 TTCAGATATT
72000836 CCATATCGACCATTCGAACTTTCAATGATATAACTTAGTA
1 CCATATCGACCATTCGAACTTTCAATGATATAACTTAGTA
72000876 CCATATCGACCATTCGAACTTTCAATGATATAACTTAGT
1 CCATATCGACCATTCGAACTTTCAATGATATAACTTAGT
72000915 CAAATTAAAA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.34, C:0.23, G:0.10, T:0.33
Consensus pattern (40 bp):
CCATATCGACCATTCGAACTTTCAATGATATAACTTAGTA
Found at i:72001124 original size:33 final size:33
Alignment explanation
Indices: 72001078--72001143 Score: 114
Period size: 33 Copynumber: 2.0 Consensus size: 33
72001068 TTTGCCCATT
*
72001078 GAACCATTTAGAATCGTTAAGGATACACGGTAA
1 GAACCATTCAGAATCGTTAAGGATACACGGTAA
*
72001111 GAACCATTCAGAATCGTTAAGGATACATGGTAA
1 GAACCATTCAGAATCGTTAAGGATACACGGTAA
72001144 TCACATATAG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.39, C:0.15, G:0.21, T:0.24
Consensus pattern (33 bp):
GAACCATTCAGAATCGTTAAGGATACACGGTAA
Found at i:72002872 original size:23 final size:22
Alignment explanation
Indices: 72002831--72002882 Score: 63
Period size: 23 Copynumber: 2.4 Consensus size: 22
72002821 TATTAAATAG
*
72002831 ATATTCATT-ATATTTATTATT
1 ATATTAATTGATATTTATTATT
72002852 -TAATTAATTGATATTATATTATT
1 AT-ATTAATTGATATT-TATTATT
72002875 ATATTAAT
1 ATATTAAT
72002883 GAATAAACTA
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
20 1 0.04
21 6 0.23
22 5 0.19
23 13 0.50
24 1 0.04
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.58
Consensus pattern (22 bp):
ATATTAATTGATATTTATTATT
Found at i:72003055 original size:20 final size:21
Alignment explanation
Indices: 72003022--72003065 Score: 54
Period size: 20 Copynumber: 2.1 Consensus size: 21
72003012 ATAAAATAAT
* *
72003022 AAACAAAAGTAAAATAAAAAG
1 AAACAAAAGCAAAAGAAAAAG
*
72003043 AAAC-AAAGCAAAAGAAACAG
1 AAACAAAAGCAAAAGAAAAAG
72003063 AAA
1 AAA
72003066 ACATTCGAAC
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
20 16 0.80
21 4 0.20
ACGTcount: A:0.75, C:0.09, G:0.11, T:0.05
Consensus pattern (21 bp):
AAACAAAAGCAAAAGAAAAAG
Found at i:72007915 original size:19 final size:20
Alignment explanation
Indices: 72007891--72007928 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
72007881 GGTACCACCA
72007891 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
72007910 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
72007929 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:72008268 original size:93 final size:93
Alignment explanation
Indices: 72008158--72008328 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
72008148 GCCCCTAAGT
* *
72008158 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
72008223 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * *
72008251 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
72008316 CGAGTTCGGATGC
66 CGAGTTCGGATGC
72008329 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:72008325 original size:46 final size:46
Alignment explanation
Indices: 72008153--72008325 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 46
72008143 AACCCGCCCC
* * * *
72008153 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* * *
72008199 TAAATGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCA
* *
72008247 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
72008292 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
72008326 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 13, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 60 0.56
47 29 0.27
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:72015505 original size:19 final size:20
Alignment explanation
Indices: 72015481--72015518 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
72015471 GGTACCACCA
72015481 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
72015500 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
72015519 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:72015814 original size:46 final size:46
Alignment explanation
Indices: 72015747--72015868 Score: 199
Period size: 46 Copynumber: 2.7 Consensus size: 46
72015737 CGCCCCTAAG
* * *
72015747 TGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAA
1 TGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAA
* *
72015793 TGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAG
1 TGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAA
72015839 TGAACTCGGACTCAACTCAACGAGTTCGGA
1 TGAACTCGGACTCAACTCAACGAGTTCGGA
72015869 TGCTCAACCA
Statistics
Matches: 71, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 71 1.00
ACGTcount: A:0.30, C:0.28, G:0.21, T:0.21
Consensus pattern (46 bp):
TGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAA
Found at i:72015887 original size:46 final size:45
Alignment explanation
Indices: 72015745--72015887 Score: 137
Period size: 46 Copynumber: 3.1 Consensus size: 45
72015735 CCCGCCCCTA
* ** *
72015745 AGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTC-GCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGTTCACCATCC-T
* ** **
72015790 AAATGAACTCGGACTCAACTCAACGAGTTCGGACATT-TGCATCCAT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGTTCACCATCC-T
*
72015836 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGTTC-ACCATCCT
72015883 AGTGA
1 AGTGA
72015888 CATGTCACTT
Statistics
Matches: 84, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
46 78 0.93
47 1 0.01
48 5 0.06
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGTTCACCATCCT
Found at i:72019952 original size:20 final size:21
Alignment explanation
Indices: 72019927--72019966 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
72019917 TATACATACA
72019927 ATCAATCATATATCA-AATAG
1 ATCAATCATATATCACAATAG
*
72019947 ATCAATCATTTATCACAATA
1 ATCAATCATATATCACAATA
72019967 TCAGTCATGT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 14 0.78
21 4 0.22
ACGTcount: A:0.47, C:0.17, G:0.03, T:0.33
Consensus pattern (21 bp):
ATCAATCATATATCACAATAG
Found at i:72029911 original size:36 final size:36
Alignment explanation
Indices: 72029864--72029936 Score: 146
Period size: 36 Copynumber: 2.0 Consensus size: 36
72029854 ATTCGAGAAA
72029864 GCTAAAAAACCACTGTTGACACCACACGAGCATGTG
1 GCTAAAAAACCACTGTTGACACCACACGAGCATGTG
72029900 GCTAAAAAACCACTGTTGACACCACACGAGCATGTG
1 GCTAAAAAACCACTGTTGACACCACACGAGCATGTG
72029936 G
1 G
72029937 TCGCCAGTGT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.36, C:0.27, G:0.21, T:0.16
Consensus pattern (36 bp):
GCTAAAAAACCACTGTTGACACCACACGAGCATGTG
Found at i:72031599 original size:21 final size:22
Alignment explanation
Indices: 72031543--72031599 Score: 59
Period size: 21 Copynumber: 2.7 Consensus size: 22
72031533 TTTTGAGCAA
*
72031543 TTTAAATTT-TCTTTTATGTTT
1 TTTAACTTTCTCTTTTATGTTT
72031564 TTTAACTTTCT-TTTTAT-TTAT
1 TTTAACTTTCTCTTTTATGTT-T
*
72031585 TTT-CCTTTCTCTTTT
1 TTTAACTTTCTCTTTT
72031600 GTTTCTCCCT
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
20 8 0.26
21 22 0.71
22 1 0.03
ACGTcount: A:0.14, C:0.12, G:0.02, T:0.72
Consensus pattern (22 bp):
TTTAACTTTCTCTTTTATGTTT
Found at i:72032261 original size:89 final size:89
Alignment explanation
Indices: 72032110--72032282 Score: 328
Period size: 89 Copynumber: 1.9 Consensus size: 89
72032100 GTATTGATTA
* *
72032110 ATTCAATAGGATTGATTTATTCATCTTGCAGTGATCGAAAATAGTCTTTGAGTTTATACACAAAG
1 ATTCAATAAGATTGATTTATTCATCTTGCAGTGATCGAAAACAGTCTTTGAGTTTATACACAAAG
72032175 TATGTAATCAAGGATATTTGGCTC
66 TATGTAATCAAGGATATTTGGCTC
72032199 ATTCAATAAGATTGATTTATTCATCTTGCAGTGATCGAAAACAGTCTTTGAGTTTATACACAAAG
1 ATTCAATAAGATTGATTTATTCATCTTGCAGTGATCGAAAACAGTCTTTGAGTTTATACACAAAG
72032264 TATGTAATCAAGGATATTT
66 TATGTAATCAAGGATATTT
72032283 AGCTTTAACA
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
89 82 1.00
ACGTcount: A:0.34, C:0.12, G:0.17, T:0.37
Consensus pattern (89 bp):
ATTCAATAAGATTGATTTATTCATCTTGCAGTGATCGAAAACAGTCTTTGAGTTTATACACAAAG
TATGTAATCAAGGATATTTGGCTC
Found at i:72035875 original size:12 final size:12
Alignment explanation
Indices: 72035860--72035888 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
72035850 GTGTTATTTT
72035860 TATTTGTTTTAA
1 TATTTGTTTTAA
72035872 TATTTGTTTTAA
1 TATTTGTTTTAA
72035884 TATTT
1 TATTT
72035889 TTAAATATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.24, C:0.00, G:0.07, T:0.69
Consensus pattern (12 bp):
TATTTGTTTTAA
Found at i:72035931 original size:25 final size:26
Alignment explanation
Indices: 72035871--72035919 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
72035861 ATTTGTTTTA
*
72035871 ATATTTG-TTT-TAATATTTTTAAAT
1 ATATTTGATTTATTATATTTTTAAAT
72035895 ATATTTGATTTATTATATTTTTAAA
1 ATATTTGATTTATTATATTTTTAAA
72035920 ATTTTTTATT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.32
25 3 0.14
26 12 0.55
ACGTcount: A:0.35, C:0.00, G:0.04, T:0.61
Consensus pattern (26 bp):
ATATTTGATTTATTATATTTTTAAAT
Found at i:72042280 original size:30 final size:31
Alignment explanation
Indices: 72042237--72042315 Score: 81
Period size: 30 Copynumber: 2.6 Consensus size: 31
72042227 CATTAAATTA
* * * *
72042237 AAAGAGTATAAGGACTAAATTTTTGAAAGT-G
1 AAAGAATAAAAGGACTAAATTTCT-AAAGTAC
*
72042268 AAA-AATAAAAGGATTAAATTTCTAAAGTAC
1 AAAGAATAAAAGGACTAAATTTCTAAAGTAC
*
72042298 AAAGAATAGAAGGACTAA
1 AAAGAATAAAAGGACTAA
72042316 GAGCAAAGTT
Statistics
Matches: 39, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
29 5 0.13
30 19 0.49
31 15 0.38
ACGTcount: A:0.53, C:0.05, G:0.18, T:0.24
Consensus pattern (31 bp):
AAAGAATAAAAGGACTAAATTTCTAAAGTAC
Found at i:72044745 original size:270 final size:270
Alignment explanation
Indices: 72044250--72044791 Score: 1030
Period size: 270 Copynumber: 2.0 Consensus size: 270
72044240 CATTAGCAAG
*
72044250 CTTAGCCAATGACACTATGTTGATTATGATCAGTATAAGATAGTGTGATTATAGAGTATCGAAGA
1 CTTAGCCAATGACACTATGTTGATTATGATCAGTATAAGATAGTGTGATTACAGAGTATCGAAGA
*
72044315 AATAGAGGTTTAACAAGAGAGCATTGAGGCTTTACATGTACATGGATAAAAATGGAAGATACTAG
66 AATAGAGGTTTAACAAGAGAGCATTGAGGCTTTACATGTACATGGATAAAAATGGAAGATACCAG
*
72044380 TTAGCTACTTAAGATGAGTCTTGATTAACTTGATTATTTTCGGTTCTTTCTATCAAGTGGTATCT
131 TTAGCTACTTAAGATGAGTCTTGATTAACTTGATTATTTTCAGTTCTTTCTATCAAGTGGTATCT
72044445 ATGTAATACAAGTTTTAATTGAGATATCTTAAGAGGCTTGAGCTAGCAAATTGAATCATGTTTTA
196 ATGTAATACAAGTTTTAATTGAGATATCTTAAGAGGCTTGAGCTAGCAAATTGAATCATGTTTTA
72044510 AGTGAGATAT
261 AGTGAGATAT
* *
72044520 CTTAGCTAATGACGCTATGTTGATTATGATCAGTATAAGATAGTGTGATTACAGAGTATCGAAGA
1 CTTAGCCAATGACACTATGTTGATTATGATCAGTATAAGATAGTGTGATTACAGAGTATCGAAGA
72044585 AATAGAGGTTTAACAAGAGAGCATTGAGGCTTTACATGTACATGGATAAAAATGGAAGATACCAG
66 AATAGAGGTTTAACAAGAGAGCATTGAGGCTTTACATGTACATGGATAAAAATGGAAGATACCAG
*
72044650 TTAGCTACTTAAGATGAGTCTTGATTAACTTGATTGTTTTCAGTTCTTTCTATCAAGTGGTATCT
131 TTAGCTACTTAAGATGAGTCTTGATTAACTTGATTATTTTCAGTTCTTTCTATCAAGTGGTATCT
72044715 ATGTAATACAAGTTTTAATTGAGATATCTTAAGAGGCTTGAGCTAGCAAATTGAATCATGTTTTA
196 ATGTAATACAAGTTTTAATTGAGATATCTTAAGAGGCTTGAGCTAGCAAATTGAATCATGTTTTA
72044780 AGTGAGATAT
261 AGTGAGATAT
72044790 CT
1 CT
72044792 CACAACCGTG
Statistics
Matches: 266, Mismatches: 6, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
270 266 1.00
ACGTcount: A:0.34, C:0.11, G:0.21, T:0.35
Consensus pattern (270 bp):
CTTAGCCAATGACACTATGTTGATTATGATCAGTATAAGATAGTGTGATTACAGAGTATCGAAGA
AATAGAGGTTTAACAAGAGAGCATTGAGGCTTTACATGTACATGGATAAAAATGGAAGATACCAG
TTAGCTACTTAAGATGAGTCTTGATTAACTTGATTATTTTCAGTTCTTTCTATCAAGTGGTATCT
ATGTAATACAAGTTTTAATTGAGATATCTTAAGAGGCTTGAGCTAGCAAATTGAATCATGTTTTA
AGTGAGATAT
Found at i:72047542 original size:33 final size:33
Alignment explanation
Indices: 72047500--72047565 Score: 105
Period size: 33 Copynumber: 2.0 Consensus size: 33
72047490 GATTGAGTGG
* *
72047500 GAGTGTTTGGTTGCTGGATAGGAGCTGGAATGT
1 GAGTGTTTGGTTGCTGGACAGAAGCTGGAATGT
*
72047533 GAGTGTTTGGTTGCTTGACAGAAGCTGGAATGT
1 GAGTGTTTGGTTGCTGGACAGAAGCTGGAATGT
72047566 CAAGTAGAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.20, C:0.08, G:0.39, T:0.33
Consensus pattern (33 bp):
GAGTGTTTGGTTGCTGGACAGAAGCTGGAATGT
Found at i:72063938 original size:51 final size:51
Alignment explanation
Indices: 72063853--72063950 Score: 126
Period size: 51 Copynumber: 1.9 Consensus size: 51
72063843 GTAATGCAAA
* * ***
72063853 AAAATTATTTTCAGAATATTTTTAGTTGTGGAAAATCCTCTGACTGTTGCAG
1 AAAATTATTTTCAGAATAATTTCAGTTAAAGAAAATCCTCTG-CTGTTGCAG
*
72063905 AAAA-TATTTTCAGAATAATTTCAGTTAAAGAAAATCCTTTGCTGTT
1 AAAATTATTTTCAGAATAATTTCAGTTAAAGAAAATCCTCTGCTGTT
72063951 TTTGGAAAAT
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
50 5 0.12
51 31 0.77
52 4 0.10
ACGTcount: A:0.35, C:0.11, G:0.14, T:0.40
Consensus pattern (51 bp):
AAAATTATTTTCAGAATAATTTCAGTTAAAGAAAATCCTCTGCTGTTGCAG
Found at i:72068596 original size:46 final size:45
Alignment explanation
Indices: 72068455--72068600 Score: 114
Period size: 46 Copynumber: 3.1 Consensus size: 45
72068445 TATTTGTTTT
* * * *
72068455 CTAGTGTAAGACATGTTTGGGACATGCATTGGCCAC-ATTATGAGAG
1 CTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-AATGA-AG
* * *** * **
72068501 CCAGTGTAAGACCATGTCTGGGATATGGCATCGAAATTGAAACAAAAG
1 CTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAAA-TGAAG
*
72068549 CTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTAAG
1 CTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAAATG-AAG
72068595 CTAGTG
1 CTAGTG
72068601 CATCAGCTAC
Statistics
Matches: 74, Mismatches: 21, Indels: 10
0.70 0.20 0.10
Matches are distributed among these distances:
46 29 0.39
47 25 0.34
48 18 0.24
49 2 0.03
ACGTcount: A:0.30, C:0.17, G:0.28, T:0.25
Consensus pattern (45 bp):
CTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAAATGAAG
Found at i:72074673 original size:391 final size:390
Alignment explanation
Indices: 72073953--72074713 Score: 1014
Period size: 391 Copynumber: 1.9 Consensus size: 390
72073943 ACTAATCCTA
* * * * *
72073953 AGCATCCCTGGGACTCTCACTCGATTTTGCTATTTCTTTGACTTTTCCCTTGACGATCAACCTTT
1 AGCATCCCTAGGACTCTCACTCGATCTTGCTATTCCTTTGACGTTGCCCTTGACGATCAACCTTT
* * * * ** * * * *
72074018 TGTAAGATAATCTGAGTCGGTCGCTCATTTGACAGTTGATAGGGGGCCCGTGGATGGTTGTGCTA
66 TGTAAGACAATCTGAGTCGGTCACTCAGTTCACAAATGAGAGGGGCCCCGTAGATGGTTGTGCAA
* * *
72074083 GTGCGAACACATCCTATAGATCATTGTGATAGGGCTCAAAGTTGTAATCCTTCCTAGCCTCATCA
131 GCGCGAACACATCCTATAGATCATCGTGATAGGGCTCAAAGTTGTAATCCTTCCTAACCTCATCA
* *
72074148 TCATCCTCGTTTCCTACTTCATCTTCTTTCTATTACTTATTGGATACATTGTCCTCAGATGAATC
196 TCATCCTCCTTTCCTACTTCATCTTCTTTCTATTACTCATTGGATACATTGTCCTCAGATGAATC
* * * **
72074213 ACTTAATTTTTCAGGCCATTGTATGCTTTCTGCCCCCTGGCTTGCCATAAATGTGTCACACACCA
261 ACTCAATTTTTCAGGCCATTGTATGCTTTCTGCCCACTGACTCACCATAAATGTGTCACACACCA
* * *
72074278 ACATCGGTGGATCCGAGAAAAAGGGTAACTGGGCATGCATATTACCTATTTTAACTTTGCCCTTG
326 ACATCGATGGATCCGAGAAAAAAGGTAACTAGGCATGCATATTACCTATTTTAACTTTGCCCTTG
*
72074343 AGCATCCCTAGGACTCTCACTCGATCTTGCTATTCCTTTGACGTTGCCCTTGATGATCGAA-CTT
1 AGCATCCCTAGGACTCTCACTCGATCTTGCTATTCCTTTGACGTTGCCCTTGACGATC-AACCTT
* *
72074407 TTGTAAGACAGTCTGAGTTGGTCACTCAGTTCACAAATGACGAGGGGCCCCGTAGATGGTTGTGC
65 TTGTAAGACAATCTGAGTCGGTCACTCAGTTCACAAATGA-GAGGGGCCCCGTAGATGGTTGTGC
* * *
72074472 AAGCGCGAACACATCTTATAGATCATCGTGATAGGGCTCGAA-TTCGTAATCC-TCCGTAACCTT
129 AAGCGCGAACACATCCTATAGATCATCGTGATAGGGCTCAAAGTT-GTAATCCTTCC-TAACCTC
* * ** * *
72074535 GTCATCGTCCTCCTCTT-CTACTTTGTCTTCTTTCTATT-CATCCTTGGCTACATT-TCCCTCAG
192 ATCATCATCCTCCT-TTCCTACTTCATCTTCTTTCTATTAC-TCATTGGATACATTGT-CCTCAG
*
72074597 ATGAATCACTCAATTTGTT-AGGTCATTGTATGCTTTCTGCCCACTGACTCACCATAAATGTGTC
254 ATGAATCACTCAATTT-TTCAGGCCATTGTATGCTTTCTGCCCACTGACTCACCATAAATGTGTC
* *
72074661 ACACCCCAACATCGATGGATCCGAGAAAAAAGGTAACTAGGCATGCATGTTAC
318 ACACACCAACATCGATGGATCCGAGAAAAAAGGTAACTAGGCATGCATATTAC
72074714 ATGTTTTGAT
Statistics
Matches: 320, Mismatches: 43, Indels: 15
0.85 0.11 0.04
Matches are distributed among these distances:
390 94 0.29
391 222 0.69
392 4 0.01
ACGTcount: A:0.23, C:0.25, G:0.19, T:0.33
Consensus pattern (390 bp):
AGCATCCCTAGGACTCTCACTCGATCTTGCTATTCCTTTGACGTTGCCCTTGACGATCAACCTTT
TGTAAGACAATCTGAGTCGGTCACTCAGTTCACAAATGAGAGGGGCCCCGTAGATGGTTGTGCAA
GCGCGAACACATCCTATAGATCATCGTGATAGGGCTCAAAGTTGTAATCCTTCCTAACCTCATCA
TCATCCTCCTTTCCTACTTCATCTTCTTTCTATTACTCATTGGATACATTGTCCTCAGATGAATC
ACTCAATTTTTCAGGCCATTGTATGCTTTCTGCCCACTGACTCACCATAAATGTGTCACACACCA
ACATCGATGGATCCGAGAAAAAAGGTAACTAGGCATGCATATTACCTATTTTAACTTTGCCCTTG
Found at i:72082495 original size:39 final size:39
Alignment explanation
Indices: 72082441--72082561 Score: 208
Period size: 39 Copynumber: 3.1 Consensus size: 39
72082431 AATTATGTTA
72082441 CCAGCAC-AAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAA-CCTGCGGGACTTTAGCCCGGATACATTT
72082480 CCAGCACGAAACCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAACCTGCGGGACTTTAGCCCGGATACATTT
* *
72082519 CCAGCACGAAGCCTGCGGGTCTTTAGCCCGGATACATTT
1 CCAGCACGAAACCTGCGGGACTTTAGCCCGGATACATTT
72082558 CCAG
1 CCAG
72082562 TGTCTTGCTT
Statistics
Matches: 79, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
39 76 0.96
40 3 0.04
ACGTcount: A:0.24, C:0.31, G:0.24, T:0.21
Consensus pattern (39 bp):
CCAGCACGAAACCTGCGGGACTTTAGCCCGGATACATTT
Found at i:72088757 original size:20 final size:20
Alignment explanation
Indices: 72088541--72088754 Score: 261
Period size: 20 Copynumber: 10.8 Consensus size: 20
72088531 TATCAGTATA
* *
72088541 TGGCACAAAGCCATGAGTAG
1 TGGCACAAAGCCATCAATAG
*
72088561 TGGCACGAAGCCATCAATAG
1 TGGCACAAAGCCATCAATAG
* * * *
72088581 TGGTACAAAACCATGAGTAG
1 TGGCACAAAGCCATCAATAG
* *
72088601 CGGCATAAAGCCATCAATAG
1 TGGCACAAAGCCATCAATAG
* *
72088621 CGGTACAAAGCCATCAATAG
1 TGGCACAAAGCCATCAATAG
*
72088641 TGGCATAAAGCCATCAATAG
1 TGGCACAAAGCCATCAATAG
*
72088661 CGGCACAAAGCCATCAATAG
1 TGGCACAAAGCCATCAATAG
*
72088681 TAGCACAAAGCCATCAATAG
1 TGGCACAAAGCCATCAATAG
72088701 TGGCAC--AGCCATCAATAG
1 TGGCACAAAGCCATCAATAG
*
72088719 TGGCACAAAGCCATCAGTAG
1 TGGCACAAAGCCATCAATAG
* *
72088739 CGACACAAAGCCATCA
1 TGGCACAAAGCCATCA
72088755 GTAACGGCAC
Statistics
Matches: 165, Mismatches: 27, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
18 18 0.11
20 147 0.89
ACGTcount: A:0.39, C:0.25, G:0.21, T:0.15
Consensus pattern (20 bp):
TGGCACAAAGCCATCAATAG
Found at i:72091489 original size:27 final size:28
Alignment explanation
Indices: 72091455--72091510 Score: 96
Period size: 27 Copynumber: 2.0 Consensus size: 28
72091445 CAATAAAACT
*
72091455 AAAATCTAACCTAAAAA-GAAAAGAAAA
1 AAAATCTAAACTAAAAATGAAAAGAAAA
72091482 AAAATCTAAACTAAAAATGAAAAGAAAA
1 AAAATCTAAACTAAAAATGAAAAGAAAA
72091510 A
1 A
72091511 GAAAAGAAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
27 16 0.59
28 11 0.41
ACGTcount: A:0.71, C:0.09, G:0.07, T:0.12
Consensus pattern (28 bp):
AAAATCTAAACTAAAAATGAAAAGAAAA
Found at i:72092892 original size:15 final size:15
Alignment explanation
Indices: 72092869--72092913 Score: 63
Period size: 15 Copynumber: 2.9 Consensus size: 15
72092859 GTGGGTGGGT
*
72092869 GAAGAAGAAGAAAGG
1 GAAGAAGAAGAAAAG
*
72092884 GAAGGAGAAGAAAAG
1 GAAGAAGAAGAAAAG
72092899 GAGAGAAGAAGAAAA
1 GA-AGAAGAAGAAAA
72092914 AGGAGAAGGG
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
15 15 0.58
16 11 0.42
ACGTcount: A:0.62, C:0.00, G:0.38, T:0.00
Consensus pattern (15 bp):
GAAGAAGAAGAAAAG
Found at i:72092921 original size:15 final size:15
Alignment explanation
Indices: 72092869--72092921 Score: 52
Period size: 16 Copynumber: 3.3 Consensus size: 15
72092859 GTGGGTGGGT
72092869 GAAGAAGAAGAAAGGGAA
1 GAAGAAGAA-AAA-GG-A
* *
72092887 GGAGAAGAAAAGGAGA
1 GAAGAAGAAAAAG-GA
72092903 GAAGAAGAAAAAGGA
1 GAAGAAGAAAAAGGA
72092918 GAAG
1 GAAG
72092922 GGAAGGGAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 5
0.77 0.10 0.13
Matches are distributed among these distances:
15 6 0.20
16 13 0.43
17 3 0.10
18 8 0.27
ACGTcount: A:0.60, C:0.00, G:0.40, T:0.00
Consensus pattern (15 bp):
GAAGAAGAAAAAGGA
Found at i:72093800 original size:21 final size:21
Alignment explanation
Indices: 72093751--72093809 Score: 59
Period size: 21 Copynumber: 2.8 Consensus size: 21
72093741 ATAATAAATC
*
72093751 AAAT-ATATTTAAAA-ACATAA
1 AAATAATA-TTAAAACAAATAA
*
72093771 AAACAAATATTAAAACAAATAA
1 AAA-TAATATTAAAACAAATAA
*
72093793 AAATAATACTAAAACAA
1 AAATAATATTAAAACAA
72093810 TTCTTAAAAC
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
20 3 0.09
21 18 0.56
22 11 0.34
ACGTcount: A:0.69, C:0.08, G:0.00, T:0.22
Consensus pattern (21 bp):
AAATAATATTAAAACAAATAA
Found at i:72097749 original size:43 final size:43
Alignment explanation
Indices: 72097702--72097799 Score: 142
Period size: 43 Copynumber: 2.3 Consensus size: 43
72097692 ATATGATTAT
72097702 GTGTAAGACCATGTCTGGGACATTGGCATCATTATGTGATTGC
1 GTGTAAGACCATGTCTGGGACATTGGCATCATTATGTGATTGC
* * * *
72097745 GTGTAAGGCCATGTCTGGGACATTGGCATCGTTATTTGATTTC
1 GTGTAAGACCATGTCTGGGACATTGGCATCATTATGTGATTGC
* *
72097788 ATGTAAAACCAT
1 GTGTAAGACCAT
72097800 AGCTGGGTTA
Statistics
Matches: 48, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
43 48 1.00
ACGTcount: A:0.24, C:0.16, G:0.26, T:0.34
Consensus pattern (43 bp):
GTGTAAGACCATGTCTGGGACATTGGCATCATTATGTGATTGC
Found at i:72102150 original size:27 final size:27
Alignment explanation
Indices: 72102097--72102150 Score: 63
Period size: 27 Copynumber: 2.0 Consensus size: 27
72102087 CATAAAAAAA
* ***
72102097 CTAACAATATCAAATTTATTGTCATTT
1 CTAACAATATCAAATATATTAAAATTT
*
72102124 CTAATAATATCAAATATATTAAAATTT
1 CTAACAATATCAAATATATTAAAATTT
72102151 TTTACAAGAT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.44, C:0.11, G:0.02, T:0.43
Consensus pattern (27 bp):
CTAACAATATCAAATATATTAAAATTT
Found at i:72102361 original size:21 final size:20
Alignment explanation
Indices: 72102319--72102361 Score: 50
Period size: 21 Copynumber: 2.1 Consensus size: 20
72102309 AAAAAATTAC
* *
72102319 CTTTTTTTTTCTTCTCTTTT
1 CTTTTTTCTTCTTCTCTCTT
*
72102339 CTTTCTTTCTTCTTTTCTCTT
1 CTTT-TTTCTTCTTCTCTCTT
72102360 CT
1 CT
72102362 CCCTCTCTTA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
20 4 0.21
21 15 0.79
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (20 bp):
CTTTTTTCTTCTTCTCTCTT
Found at i:72104431 original size:43 final size:43
Alignment explanation
Indices: 72104272--72104441 Score: 132
Period size: 44 Copynumber: 4.0 Consensus size: 43
72104262 CAAGATTTCT
* *
72104272 GATATGTGATTTCATGTAAGACCACGTCTGGGAC-GTTGGCATC
1 GATATTTGATTACATGTAAGACCACGTCTGGGACAG-TGGCATC
** * *
72104315 GAT-TTGTGATTTATGTGTAAGACCATGTCTGGGACATTGGCATC
1 GATATT-TGA-TTACATGTAAGACCACGTCTGGGACAGTGGCATC
* ** ** *** **
72104359 G-CATTCAATT-TGTGTAAGACCTTATCTGGGACAGAAGCATC
1 GATATTTGATTACATGTAAGACCACGTCTGGGACAGTGGCATC
*
72104400 GATATTTGATTACATGTAAGACCACGTCTGGGACATTGGCAT
1 GATATTTGATTACATGTAAGACCACGTCTGGGACAGTGGCAT
72104442 TGTACGAGCT
Statistics
Matches: 96, Mismatches: 25, Indels: 12
0.72 0.19 0.09
Matches are distributed among these distances:
41 27 0.28
42 9 0.09
43 29 0.30
44 31 0.32
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (43 bp):
GATATTTGATTACATGTAAGACCACGTCTGGGACAGTGGCATC
Found at i:72106708 original size:21 final size:21
Alignment explanation
Indices: 72106684--72106752 Score: 50
Period size: 21 Copynumber: 3.1 Consensus size: 21
72106674 CTAGGAACTA
72106684 TGTGATCTGAATTCATTGAGT
1 TGTGATCTGAATTCATTGAGT
* * * *
72106705 TGTGGTTTGAGTTCA-TGATAT
1 TGTGATCTGAATTCATTGA-GT
*
72106726 ATGTGACATCTGAACTCATTGAGT
1 -TGTG--ATCTGAATTCATTGAGT
72106750 TGT
1 TGT
72106753 AGTTTGAGTT
Statistics
Matches: 34, Mismatches: 9, Indels: 8
0.67 0.18 0.16
Matches are distributed among these distances:
20 3 0.09
21 13 0.38
22 4 0.12
23 3 0.09
24 8 0.24
25 3 0.09
ACGTcount: A:0.23, C:0.10, G:0.25, T:0.42
Consensus pattern (21 bp):
TGTGATCTGAATTCATTGAGT
Found at i:72106745 original size:45 final size:45
Alignment explanation
Indices: 72106688--72106775 Score: 149
Period size: 45 Copynumber: 2.0 Consensus size: 45
72106678 GAACTATGTG
* *
72106688 ATCTGAATTCATTGAGTTGTGGTTTGAGTTCATGATATATGTGAC
1 ATCTGAACTCATTGAGTTGTAGTTTGAGTTCATGATATATGTGAC
*
72106733 ATCTGAACTCATTGAGTTGTAGTTTGAGTTCATGATGTATGTG
1 ATCTGAACTCATTGAGTTGTAGTTTGAGTTCATGATATATGTG
72106776 GCACATGTTT
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 40 1.00
ACGTcount: A:0.24, C:0.09, G:0.25, T:0.42
Consensus pattern (45 bp):
ATCTGAACTCATTGAGTTGTAGTTTGAGTTCATGATATATGTGAC
Found at i:72107674 original size:13 final size:13
Alignment explanation
Indices: 72107656--72107683 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
72107646 GTAGATTAGT
72107656 AAAAATGATAGAC
1 AAAAATGATAGAC
72107669 AAAAATGATAGAC
1 AAAAATGATAGAC
72107682 AA
1 AA
72107684 GTGGGTAACT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.64, C:0.07, G:0.14, T:0.14
Consensus pattern (13 bp):
AAAAATGATAGAC
Found at i:72110405 original size:34 final size:34
Alignment explanation
Indices: 72110362--72110426 Score: 121
Period size: 34 Copynumber: 1.9 Consensus size: 34
72110352 AATTGAAGTG
72110362 ATTGTTTTTAATCCAAAACTACTAATCTAATTTA
1 ATTGTTTTTAATCCAAAACTACTAATCTAATTTA
*
72110396 ATTGTTTTTAATCTAAAACTACTAATCTAAT
1 ATTGTTTTTAATCCAAAACTACTAATCTAAT
72110427 AAAACTACTA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 30 1.00
ACGTcount: A:0.38, C:0.14, G:0.03, T:0.45
Consensus pattern (34 bp):
ATTGTTTTTAATCCAAAACTACTAATCTAATTTA
Found at i:72110423 original size:14 final size:14
Alignment explanation
Indices: 72110404--72110442 Score: 51
Period size: 17 Copynumber: 2.6 Consensus size: 14
72110394 TAATTGTTTT
72110404 TAATCTAAAACTAC
1 TAATCTAAAACTAC
72110418 TAATCTAATAAAACTAC
1 TAATC---TAAAACTAC
72110435 TAATCTAA
1 TAATCTAA
72110443 TTTAACTACA
Statistics
Matches: 22, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
14 8 0.36
17 14 0.64
ACGTcount: A:0.51, C:0.18, G:0.00, T:0.31
Consensus pattern (14 bp):
TAATCTAAAACTAC
Found at i:72110451 original size:17 final size:17
Alignment explanation
Indices: 72110409--72110443 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
72110399 GTTTTTAATC
72110409 TAAAACTACTAATCTAA
1 TAAAACTACTAATCTAA
72110426 TAAAACTACTAATCTAA
1 TAAAACTACTAATCTAA
72110443 T
1 T
72110444 TTAACTACAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.51, C:0.17, G:0.00, T:0.31
Consensus pattern (17 bp):
TAAAACTACTAATCTAA
Found at i:72111173 original size:23 final size:23
Alignment explanation
Indices: 72111129--72111173 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 23
72111119 ATGGCGTTCT
* * * *
72111129 TTGAGTCTTTTCTTCGATCTTCC
1 TTGAGTCCTTCCTTAGAGCTTCC
72111152 TTGAGTCCTTCCTTAGAGCTTC
1 TTGAGTCCTTCCTTAGAGCTTC
72111174 TTCTAATTGA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.11, C:0.27, G:0.16, T:0.47
Consensus pattern (23 bp):
TTGAGTCCTTCCTTAGAGCTTCC
Found at i:72113432 original size:27 final size:27
Alignment explanation
Indices: 72113401--72113578 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
72113391 TAAATTGTAC
72113401 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
72113428 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
72113454 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
72113482 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
72113510 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
72113537 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
72113564 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
72113579 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:72113515 original size:82 final size:81
Alignment explanation
Indices: 72113402--72113557 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
72113392 AAATTGTACA
* *
72113402 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
72113466 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
72113483 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
72113548 TGCGAGTTGA
65 TGCGAATTGA
72113558 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:72113569 original size:82 final size:81
Alignment explanation
Indices: 72113398--72113578 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
72113388 GATTAAATTG
* *
72113398 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
72113463 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
72113479 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
72113543 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
72113561 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
72113579 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:72119052 original size:29 final size:30
Alignment explanation
Indices: 72119010--72119069 Score: 113
Period size: 30 Copynumber: 2.0 Consensus size: 30
72119000 AGTCAGTAGT
72119010 TCATGGGAACGGTA-TTACCTTTGATTGAA
1 TCATGGGAACGGTATTTACCTTTGATTGAA
72119039 TCATGGGAACGGTATTTACCTTTGATTGAA
1 TCATGGGAACGGTATTTACCTTTGATTGAA
72119069 T
1 T
72119070 TCGCTTACAA
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
29 14 0.47
30 16 0.53
ACGTcount: A:0.27, C:0.13, G:0.23, T:0.37
Consensus pattern (30 bp):
TCATGGGAACGGTATTTACCTTTGATTGAA
Found at i:72121526 original size:27 final size:27
Alignment explanation
Indices: 72121495--72121672 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
72121485 TAAATTGTAC
72121495 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
72121522 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
72121548 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
72121576 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
72121604 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
72121631 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
72121658 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
72121673 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:72121609 original size:82 final size:81
Alignment explanation
Indices: 72121496--72121651 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
72121486 AAATTGTACA
* *
72121496 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
72121560 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
72121577 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
72121642 TGCGAGTTGA
65 TGCGAATTGA
72121652 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:72121663 original size:82 final size:81
Alignment explanation
Indices: 72121492--72121672 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
72121482 GATTAAATTG
* *
72121492 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
72121557 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
72121573 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
72121637 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
72121655 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
72121673 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:72124176 original size:8 final size:8
Alignment explanation
Indices: 72124163--72124187 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
72124153 ATTAAAATAT
72124163 ATATTATA
1 ATATTATA
72124171 ATATTATA
1 ATATTATA
72124179 ATATTATA
1 ATATTATA
72124187 A
1 A
72124188 ATAAAGAAAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (8 bp):
ATATTATA
Found at i:72124242 original size:22 final size:23
Alignment explanation
Indices: 72124190--72124240 Score: 70
Period size: 21 Copynumber: 2.3 Consensus size: 23
72124180 TATTATAAAT
*
72124190 AAAGAAAGAAAGATAGAAACGAA
1 AAAGAAAGAAAGAAAGAAACGAA
*
72124213 ACAGAAAG-AAGAAAGAAA-GAA
1 AAAGAAAGAAAGAAAGAAACGAA
72124234 AAAGAAA
1 AAAGAAA
72124241 AGGGAGAAAG
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
21 9 0.36
22 9 0.36
23 7 0.28
ACGTcount: A:0.73, C:0.04, G:0.22, T:0.02
Consensus pattern (23 bp):
AAAGAAAGAAAGAAAGAAACGAA
Found at i:72132547 original size:53 final size:54
Alignment explanation
Indices: 72132479--72132686 Score: 240
Period size: 53 Copynumber: 3.9 Consensus size: 54
72132469 TTTCCTTTTT
* * * * *
72132479 GAACTTACCATTGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-
1 GAACTCACCAATGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTATA
* **
72132532 GAACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATA
1 GAACTCACCAATGCCATGCCTTGACATGGTCTTACATGATATCC-TTGCCTTATA
* * * * *
72132586 GTATCTCATCAATGCCATGTCTTGACATGATCTTACATGATTTCCTTGCCTTATA
1 G-AACTCACCAATGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTATA
* * *
72132641 GAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTT
1 GAACTCACCAATGCCATGCCTTGACATGGTCTTACATGATATCCTT
72132687 ATCTTACCAA
Statistics
Matches: 131, Mismatches: 20, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
52 2 0.02
53 44 0.34
54 40 0.31
55 43 0.33
56 2 0.02
ACGTcount: A:0.22, C:0.25, G:0.17, T:0.36
Consensus pattern (54 bp):
GAACTCACCAATGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTATA
Found at i:72132620 original size:55 final size:53
Alignment explanation
Indices: 72132490--72132678 Score: 227
Period size: 55 Copynumber: 3.5 Consensus size: 53
72132480 AACTTACCAT
* * *
72132490 TGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-GAACTCACCAA
1 TGCCATGCCTTGACATGGTCTTACATGGTA-CCTTGCCTTATAGAACTCATCAA
* * *
72132543 TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGTATCTCATCAA
1 TGCCATGCCTTGACATGGTCTTACATGGTACC-TTGCCTTATAG-AACTCATCAA
* * * * *
72132598 TGCCATGTCTTGACATGATCTTACATGATTTCCTTGCCTTATAGAACTTATCAA
1 TGCCATGCCTTGACATGGTCTTACATG-GTACCTTGCCTTATAGAACTCATCAA
*
72132652 TGCCATGCCTTGGCATGGTCTTACATG
1 TGCCATGCCTTGACATGGTCTTACATG
72132679 ATATCCTTAT
Statistics
Matches: 115, Mismatches: 17, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
52 2 0.02
53 35 0.30
54 33 0.29
55 43 0.37
56 2 0.02
ACGTcount: A:0.21, C:0.25, G:0.19, T:0.35
Consensus pattern (53 bp):
TGCCATGCCTTGACATGGTCTTACATGGTACCTTGCCTTATAGAACTCATCAA
Found at i:72132720 original size:47 final size:47
Alignment explanation
Indices: 72132665--72132786 Score: 210
Period size: 47 Copynumber: 2.6 Consensus size: 47
72132655 CATGCCTTGG
*
72132665 CATGGTCTTACATGATATCCTTATCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGATATCCTTGTCTTACCAAATGCCATGTTCCAAA
72132712 CATGGTCTTACAT-AGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGA-TATCCTTGTCTTACCAAATGCCATGTTCCAAA
*
72132759 CATGGTCTTACATGGTATCCTTGTCTTA
1 CATGGTCTTACATGATATCCTTGTCTTA
72132787 GTGCCAATGC
Statistics
Matches: 71, Mismatches: 2, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
46 1 0.01
47 70 0.99
ACGTcount: A:0.26, C:0.25, G:0.13, T:0.36
Consensus pattern (47 bp):
CATGGTCTTACATGATATCCTTGTCTTACCAAATGCCATGTTCCAAA
Found at i:72135669 original size:40 final size:40
Alignment explanation
Indices: 72135613--72135706 Score: 152
Period size: 40 Copynumber: 2.4 Consensus size: 40
72135603 CAATGGTATT
* * * *
72135613 AGGCACTAATTCTGCGATTCAAAATAGCTTTGGTTATCTG
1 AGGCACTAAGTGTGCGATTCAAAATAGCTTCGGCTATCTG
72135653 AGGCACTAAGTGTGCGATTCAAAATAGCTTCGGCTATCTG
1 AGGCACTAAGTGTGCGATTCAAAATAGCTTCGGCTATCTG
72135693 AGGCACTAAGTGTG
1 AGGCACTAAGTGTG
72135707 TGATACCGAG
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 50 1.00
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.30
Consensus pattern (40 bp):
AGGCACTAAGTGTGCGATTCAAAATAGCTTCGGCTATCTG
Found at i:72136743 original size:55 final size:55
Alignment explanation
Indices: 72136676--72136814 Score: 206
Period size: 55 Copynumber: 2.5 Consensus size: 55
72136666 CAATTGTAAG
*
72136676 TCAGATTCGACCACGGCCAAGGCACACGTACATGTGGCTAGCCGTGTGACCCAAA
1 TCAGATTCGACCACGGCCAAGGCACACGGACATGTGGCTAGCCGTGTGACCCAAA
* * * * *
72136731 TCAGATTAGACCACGGCCAAGGCACACGGCCTTGTGGCTAGCCGTGTGGCCCAAG
1 TCAGATTCGACCACGGCCAAGGCACACGGACATGTGGCTAGCCGTGTGACCCAAA
* *
72136786 TTAGATTCGACCACGGCCAAAGCACACGG
1 TCAGATTCGACCACGGCCAAGGCACACGG
72136815 GCGTGTGTTG
Statistics
Matches: 75, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
55 75 1.00
ACGTcount: A:0.26, C:0.31, G:0.27, T:0.16
Consensus pattern (55 bp):
TCAGATTCGACCACGGCCAAGGCACACGGACATGTGGCTAGCCGTGTGACCCAAA
Found at i:72140628 original size:111 final size:112
Alignment explanation
Indices: 72140420--72140637 Score: 393
Period size: 111 Copynumber: 2.0 Consensus size: 112
72140410 TCTAGGCCAT
*
72140420 GTGTGACACACGGTCAGCCCTATGGGCATGTGAGCAGGCCGTGCATCCCCTGCACCTAGAAATTT
1 GTGTGACACACGGTCAGCCCTATGGGCATGTGAGAAGGCCGTGCATCCCCTGCACCTAGAAATTT
72140485 CAAGTCAGAACGCATGGTAAGGGTCACACGGGCAGAGACACGGCCGC
66 CAAGTCAGAACGCATGGTAAGGGTCACACGGGCAGAGACACGGCCGC
*
72140532 GTGTGACACACGGTCAGCCCTTTGGGCATGTGAGAAGGCCGTGCAT-CCCTGCACCTAGAAATTT
1 GTGTGACACACGGTCAGCCCTATGGGCATGTGAGAAGGCCGTGCATCCCCTGCACCTAGAAATTT
* *
72140596 CAAGTCAGAATGCATGGTAAGGGTCACTCGGGCAGAGACACG
66 CAAGTCAGAACGCATGGTAAGGGTCACACGGGCAGAGACACG
72140638 ACGATGTGTC
Statistics
Matches: 102, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
111 58 0.57
112 44 0.43
ACGTcount: A:0.25, C:0.27, G:0.30, T:0.18
Consensus pattern (112 bp):
GTGTGACACACGGTCAGCCCTATGGGCATGTGAGAAGGCCGTGCATCCCCTGCACCTAGAAATTT
CAAGTCAGAACGCATGGTAAGGGTCACACGGGCAGAGACACGGCCGC
Found at i:72145978 original size:40 final size:40
Alignment explanation
Indices: 72145918--72146012 Score: 163
Period size: 40 Copynumber: 2.4 Consensus size: 40
72145908 CAATGGTATT
* *
72145918 AGGCACTAAGTGTGCGATTCAAAATAGCTTCGGTTATTTG
1 AGGCACTAAGTGTGCAATTCAAAATAGCTTCGGCTATTTG
*
72145958 AGGCATTAAGTGTGCAATTCAAAATAGCTTCGGCTATTTG
1 AGGCACTAAGTGTGCAATTCAAAATAGCTTCGGCTATTTG
72145998 AGGCACTAAGTGTGC
1 AGGCACTAAGTGTGC
72146013 GATACTGAGA
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 51 1.00
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.31
Consensus pattern (40 bp):
AGGCACTAAGTGTGCAATTCAAAATAGCTTCGGCTATTTG
Found at i:72161147 original size:48 final size:48
Alignment explanation
Indices: 72161093--72161184 Score: 141
Period size: 48 Copynumber: 1.9 Consensus size: 48
72161083 CCACTATACG
* *
72161093 TAACATATAGCACATACAGATTCA-CATCAACTTACTCTTTTCAATATA
1 TAACATATAGCACATACAGAGTCATAAT-AACTTACTCTTTTCAATATA
*
72161141 TAACATATATCACATACAGAGTCATAATAACTTACTCTTTTCAA
1 TAACATATAGCACATACAGAGTCATAATAACTTACTCTTTTCAA
72161185 ATCCTTCCTT
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
48 38 0.95
49 2 0.05
ACGTcount: A:0.40, C:0.22, G:0.04, T:0.34
Consensus pattern (48 bp):
TAACATATAGCACATACAGAGTCATAATAACTTACTCTTTTCAATATA
Found at i:72161407 original size:15 final size:15
Alignment explanation
Indices: 72161387--72161417 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
72161377 AGCACTTTTT
72161387 CCAACTAGTTAGTAA
1 CCAACTAGTTAGTAA
*
72161402 CCAACTGGTTAGTAA
1 CCAACTAGTTAGTAA
72161417 C
1 C
72161418 TAACATACCC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.35, C:0.23, G:0.16, T:0.26
Consensus pattern (15 bp):
CCAACTAGTTAGTAA
Found at i:72165569 original size:42 final size:42
Alignment explanation
Indices: 72165523--72165609 Score: 108
Period size: 42 Copynumber: 2.1 Consensus size: 42
72165513 TATGTCTAAA
72165523 ACCAT-ATCTAGGATAT-GACATC-ATTATGAGACTTCGTGTAAG
1 ACCATAAT-TAGGATATGGA-ATCGA-TATGAGACTTCGTGTAAG
* *
72165565 ACCATAATTGGGATATGGAATCGATATGAGATTTCGTGTAAG
1 ACCATAATTAGGATATGGAATCGATATGAGACTTCGTGTAAG
72165607 ACC
1 ACC
72165610 TTTGATTGAA
Statistics
Matches: 40, Mismatches: 2, Indels: 6
0.83 0.04 0.12
Matches are distributed among these distances:
42 35 0.88
43 5 0.12
ACGTcount: A:0.33, C:0.15, G:0.22, T:0.30
Consensus pattern (42 bp):
ACCATAATTAGGATATGGAATCGATATGAGACTTCGTGTAAG
Found at i:72166700 original size:56 final size:56
Alignment explanation
Indices: 72166614--72166733 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
72166604 ACAAGGGATG
72166614 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
72166670 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
72166726 ATGGGCAA
1 ATGGGCAA
72166734 TAAACTAATA
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:72168099 original size:40 final size:40
Alignment explanation
Indices: 72167861--72168085 Score: 278
Period size: 40 Copynumber: 5.7 Consensus size: 40
72167851 TCGAATGATG
* * * *
72167861 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * * * *
72167901 TCCGGACCAAGAT-CCGAAGACATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
72167941 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
72167980 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
72168020 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
72168061 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
72168086 AACGAGTAGC
Statistics
Matches: 161, Mismatches: 19, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
39 33 0.20
40 118 0.73
41 10 0.06
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:72172549 original size:14 final size:14
Alignment explanation
Indices: 72172530--72172561 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
72172520 TCCGCATAGG
72172530 ATTGCCCTGATTGA
1 ATTGCCCTGATTGA
72172544 ATTGCCCTGATTGA
1 ATTGCCCTGATTGA
72172558 ATTG
1 ATTG
72172562 AGAGAATTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.22, C:0.19, G:0.22, T:0.38
Consensus pattern (14 bp):
ATTGCCCTGATTGA
Found at i:72176588 original size:42 final size:42
Alignment explanation
Indices: 72176496--72176647 Score: 171
Period size: 42 Copynumber: 3.6 Consensus size: 42
72176486 AGACTATGTC
* *
72176496 TAAGACCATATCTGGGATATGGCATC-ATTATGAGACTTCGCG
1 TAAGACCATATCTGGGATATGGCATCGA-TATGAGATTTCGTG
* * *
72176538 TAAAACCATATCTGGGATATGGCATCGATATTAGATTTTGTG
1 TAAGACCATATCTGGGATATGGCATCGATATGAGATTTCGTG
* * * * * * *
72176580 TAAGACCATAGCTGGGCTATTGGAATCGACAGGAGATCTCATG
1 TAAGACCATATCTGGGATA-TGGCATCGATATGAGATTTCGTG
72176623 TAAGACCATATCTGGGATATGGCAT
1 TAAGACCATATCTGGGATATGGCAT
72176648 TGGTGTGGTA
Statistics
Matches: 90, Mismatches: 18, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
42 56 0.62
43 34 0.38
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.29
Consensus pattern (42 bp):
TAAGACCATATCTGGGATATGGCATCGATATGAGATTTCGTG
Found at i:72212300 original size:68 final size:66
Alignment explanation
Indices: 72212223--72212371 Score: 169
Period size: 66 Copynumber: 2.2 Consensus size: 66
72212213 CATCAAGTGT
* * *
72212223 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGG-GTGATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGGTG-GATACAAGTGAAGGACACC
72212285 ATGTAG
61 ATGTAG
** * *
72212291 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGGTGGTTCCAAGTGAAGGACACCATGTA
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGGTGGATACAAGTGAAGGACACCATGTA
72212356 G
66 G
72212357 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
72212372 GATAAACTGG
Statistics
Matches: 70, Mismatches: 8, Indels: 8
0.81 0.09 0.09
Matches are distributed among these distances:
64 23 0.33
65 6 0.09
66 28 0.40
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (66 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGGTGGATACAAGTGAAGGACACCATGTA
G
Found at i:72212328 original size:64 final size:64
Alignment explanation
Indices: 72212247--72212429 Score: 187
Period size: 66 Copynumber: 2.8 Consensus size: 64
72212237 AGACATTATG
* *
72212247 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
72212311 ATGTAGCTAGGTCGCAT-GGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
72212375 AA
63 AA
* * *
72212377 ACTG--GCTAGGTCAG-ATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTC-GCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
72212430 CGAACTATAT
Statistics
Matches: 98, Mismatches: 14, Indels: 15
0.77 0.11 0.12
Matches are distributed among these distances:
62 1 0.01
63 22 0.22
64 22 0.22
65 16 0.16
66 35 0.36
67 2 0.02
ACGTcount: A:0.30, C:0.16, G:0.31, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:72229946 original size:17 final size:18
Alignment explanation
Indices: 72229914--72229949 Score: 56
Period size: 17 Copynumber: 2.0 Consensus size: 18
72229904 GGACACAAGG
72229914 ACACGCCCGTGTGTCTTCA
1 ACACGCCCG-GTGTCTTCA
72229933 ACACGCCC-GTGTCTTCA
1 ACACGCCCGGTGTCTTCA
72229950 GGCTGTGTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 9 0.53
19 8 0.47
ACGTcount: A:0.17, C:0.39, G:0.19, T:0.25
Consensus pattern (18 bp):
ACACGCCCGGTGTCTTCA
Found at i:72235459 original size:39 final size:39
Alignment explanation
Indices: 72235202--72235456 Score: 341
Period size: 39 Copynumber: 6.5 Consensus size: 39
72235192 AACATGTTTC
*
72235202 TGAGTATTGTGATATATGCTTGAATATTATGTGATTATA
1 TGAGTATTGTGATATATGCTTGAATGTTATGTGATTATA
* * * * *
72235241 TGAGAATAGTAATATATGCTTGAATTTTATATGATTATA
1 TGAGTATTGTGATATATGCTTGAATGTTATGTGATTATA
*
72235280 TGAGTATTGTGATATATGCTTGAATGTTATGTAATTATA
1 TGAGTATTGTGATATATGCTTGAATGTTATGTGATTATA
*** *
72235319 TGAGTATTACAATATATTCTTGAATGTTATGTGATTATA
1 TGAGTATTGTGATATATGCTTGAATGTTATGTGATTATA
* * *
72235358 TGAGTATTGTGATATGA-GCTTGAATGTTACGTAATTTTA
1 TGAGTATTGTGATAT-ATGCTTGAATGTTATGTGATTATA
*
72235397 TGAGTATTGTGATATATGCTTAAATGTTATGTGATTATA
1 TGAGTATTGTGATATATGCTTGAATGTTATGTGATTATA
* *
72235436 TGTGTAATGTGATATATGCTT
1 TGAGTATTGTGATATATGCTT
72235457 AAAAGTGAAC
Statistics
Matches: 185, Mismatches: 29, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
38 1 0.01
39 183 0.99
40 1 0.01
ACGTcount: A:0.31, C:0.04, G:0.20, T:0.45
Consensus pattern (39 bp):
TGAGTATTGTGATATATGCTTGAATGTTATGTGATTATA
Found at i:72249105 original size:55 final size:55
Alignment explanation
Indices: 72248933--72249110 Score: 221
Period size: 55 Copynumber: 3.2 Consensus size: 55
72248923 CCGCACTTCT
* * *
72248933 ATGAATCGCCCTTGTGGTGAATTCTGAAAAGAGTAGCCTTTGTGGCAAACTCTTGA
1 ATGAAT-GGCCTTGTGGTGAATTTTGAAAAGAGTAGCATTTGTGGCAAACTCTTGA
* ** * * *
72248989 ATGATTAACCTTGCGGTGAATTTTGAAAAAAGTGGCATTTGTGGCAAACTCTTGA
1 ATGAATGGCCTTGTGGTGAATTTTGAAAAGAGTAGCATTTGTGGCAAACTCTTGA
* * * * *
72249044 ATGAATGGCCTTATGGTGAATTTTGAAAAGAGTAACTTTTATGGCAACCTCTTGA
1 ATGAATGGCCTTGTGGTGAATTTTGAAAAGAGTAGCATTTGTGGCAAACTCTTGA
72249099 ATGAATGGCCTT
1 ATGAATGGCCTT
72249111 TTAGCGATAA
Statistics
Matches: 103, Mismatches: 19, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
55 98 0.95
56 5 0.05
ACGTcount: A:0.29, C:0.15, G:0.24, T:0.33
Consensus pattern (55 bp):
ATGAATGGCCTTGTGGTGAATTTTGAAAAGAGTAGCATTTGTGGCAAACTCTTGA
Found at i:72250704 original size:23 final size:23
Alignment explanation
Indices: 72250678--72250722 Score: 81
Period size: 23 Copynumber: 2.0 Consensus size: 23
72250668 ACAGTATCAT
72250678 ACTGAAGTGCTAGTAATAGAAGC
1 ACTGAAGTGCTAGTAATAGAAGC
*
72250701 ACTGCAGTGCTAGTAATAGAAG
1 ACTGAAGTGCTAGTAATAGAAG
72250723 TACCGAAGCA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.38, C:0.13, G:0.27, T:0.22
Consensus pattern (23 bp):
ACTGAAGTGCTAGTAATAGAAGC
Found at i:72250740 original size:23 final size:23
Alignment explanation
Indices: 72250714--72250769 Score: 58
Period size: 23 Copynumber: 2.4 Consensus size: 23
72250704 GCAGTGCTAG
* *
72250714 TAATAGAAGTACCGAAGCACTAA
1 TAATAGAAGTACCAAAGCAATAA
* * * *
72250737 TAATAAAATTACCAAAGTAATAG
1 TAATAGAAGTACCAAAGCAATAA
72250760 TAATAGAAGT
1 TAATAGAAGT
72250770 CCTTTATGGG
Statistics
Matches: 25, Mismatches: 8, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.52, C:0.11, G:0.14, T:0.23
Consensus pattern (23 bp):
TAATAGAAGTACCAAAGCAATAA
Found at i:72252510 original size:75 final size:75
Alignment explanation
Indices: 72252400--72252595 Score: 252
Period size: 75 Copynumber: 2.6 Consensus size: 75
72252390 AGCCGGATTA
*** *
72252400 ACCGACAATAATGAAAGTGAGCCCA-ACTCTGGTTGGACT-AACCAACAATATTTGCACCCAGCG
1 ACCGACAATAATGATTTTGAGCCCAGA-TCTAGTTGGA-TAAACCAACAATATTTGCACCCAGCG
72252463 CTAGTCGAATAT
64 CTAGTCGAATAT
* *
72252475 ACCGACAATAATGATTTTGAGCCCAGATCTAGTTGGATAAACTAACAATATTTGCACCCAGTGCT
1 ACCGACAATAATGATTTTGAGCCCAGATCTAGTTGGATAAACCAACAATATTTGCACCCAGCGCT
*
72252540 AGTCGGATAT
66 AGTCGAATAT
** * * *
72252550 ATGGAAAATAATGATTTTGAGCTCAGCTCTAGTTGGATAAACCAAC
1 ACCGACAATAATGATTTTGAGCCCAGATCTAGTTGGATAAACCAAC
72252596 GGTAATTACG
Statistics
Matches: 106, Mismatches: 13, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
74 1 0.01
75 104 0.98
76 1 0.01
ACGTcount: A:0.35, C:0.21, G:0.19, T:0.26
Consensus pattern (75 bp):
ACCGACAATAATGATTTTGAGCCCAGATCTAGTTGGATAAACCAACAATATTTGCACCCAGCGCT
AGTCGAATAT
Found at i:72252610 original size:75 final size:75
Alignment explanation
Indices: 72252417--72252622 Score: 227
Period size: 75 Copynumber: 2.7 Consensus size: 75
72252407 ATAATGAAAG
* * * *
72252417 TGAGCCCA-ACTCTGGTTGGACT-AACCAACAATATTTGCACCCAGCGCTAGTCGAATATACCGA
1 TGAGCCCAGA-TCTAGTTGGA-TAAACCAACAATAATTACACCCAGCGCTAGTCGGATATACCGA
*
72252480 CAATAATGATTT
64 AAATAATGATTT
* * * * **
72252492 TGAGCCCAGATCTAGTTGGATAAACTAACAATATTTGCACCCAGTGCTAGTCGGATATATGGAAA
1 TGAGCCCAGATCTAGTTGGATAAACCAACAATAATTACACCCAGCGCTAGTCGGATATACCGAAA
72252557 ATAATGATTT
66 ATAATGATTT
* * ** * *
72252567 TGAGCTCAGCTCTAGTTGGATAAACCAACGGTAATTACGCCCAGCACTAGTCGGAT
1 TGAGCCCAGATCTAGTTGGATAAACCAACAATAATTACACCCAGCGCTAGTCGGAT
72252623 TAACCAACGT
Statistics
Matches: 112, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
74 1 0.01
75 110 0.98
76 1 0.01
ACGTcount: A:0.32, C:0.22, G:0.20, T:0.26
Consensus pattern (75 bp):
TGAGCCCAGATCTAGTTGGATAAACCAACAATAATTACACCCAGCGCTAGTCGGATATACCGAAA
ATAATGATTT
Found at i:72259885 original size:75 final size:75
Alignment explanation
Indices: 72259782--72260051 Score: 360
Period size: 75 Copynumber: 3.6 Consensus size: 75
72259772 AGCTGGATTA
*** * * * *
72259782 ACCGACAATAATGAAAGTGAGCCTAGCTCTGGTTGGATTAACCAACAATATTTGCACCCAGTGCT
1 ACCGACAATAATGATTTTGAGCCCAACTCTAGTTGGATAAACCAACAATATTTGCACCCAGTGCT
72259847 AGTCGGATAT
66 AGTCGGATAT
* * *
72259857 ATCGACAATAATGATTTTAAGCCCAGCTCTAGTTGGATAAACCAACAATATTTGCACCCAGTGCT
1 ACCGACAATAATGATTTTGAGCCCAACTCTAGTTGGATAAACCAACAATATTTGCACCCAGTGCT
*
72259922 AGTCAGATAT
66 AGTCGGATAT
*** * ** * *
72259932 ACCGACAATAATGATTTTGAGCCCAACTCTAGTTGGATAAACCAATGGTAATTGTGCTCAGGGCT
1 ACCGACAATAATGATTTTGAGCCCAACTCTAGTTGGATAAACCAACAATATTTGCACCCAGTGCT
72259997 AGTCGGATAT
66 AGTCGGATAT
*
72260007 ACCGATAATAATGATTTTGAGCCCAACTCTAGTTGGATAAACCAA
1 ACCGACAATAATGATTTTGAGCCCAACTCTAGTTGGATAAACCAA
72260052 TGGTAATTGC
Statistics
Matches: 173, Mismatches: 22, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
75 173 1.00
ACGTcount: A:0.33, C:0.20, G:0.19, T:0.27
Consensus pattern (75 bp):
ACCGACAATAATGATTTTGAGCCCAACTCTAGTTGGATAAACCAACAATATTTGCACCCAGTGCT
AGTCGGATAT
Found at i:72259895 original size:40 final size:40
Alignment explanation
Indices: 72259845--72260045 Score: 118
Period size: 40 Copynumber: 5.3 Consensus size: 40
72259835 GCACCCAGTG
*
72259845 CTAGTCGGATATATCGACAATAATGATTTTAAGCCCAGCT
1 CTAGTCGGATATAACGACAATAATGATTTTAAGCCCAGCT
* * **
72259885 CTAGTTGGATA-AAC--CAACAAT-ATTTGCA-CCCAG-T
1 CTAGTCGGATATAACGACAATAATGATTTTAAGCCCAGCT
* * * *
72259919 GCTAGTCAGATATACCGACAATAATGATTTTGAGCCCAACT
1 -CTAGTCGGATATAACGACAATAATGATTTTAAGCCCAGCT
* ** * * * **
72259960 CTAGTTGGATA-AAC--CAATGGTAATTGT--GCTCAGGG
1 CTAGTCGGATATAACGACAATAATGATTTTAAGCCCAGCT
* * * *
72259995 CTAGTCGGATATACCGATAATAATGATTTTGAGCCCAACT
1 CTAGTCGGATATAACGACAATAATGATTTTAAGCCCAGCT
*
72260035 CTAGTTGGATA
1 CTAGTCGGATA
72260046 AACCAATGGT
Statistics
Matches: 114, Mismatches: 35, Indels: 24
0.66 0.20 0.14
Matches are distributed among these distances:
34 1 0.01
35 28 0.25
36 9 0.08
37 15 0.13
38 14 0.12
39 9 0.08
40 37 0.32
41 1 0.01
ACGTcount: A:0.32, C:0.19, G:0.19, T:0.29
Consensus pattern (40 bp):
CTAGTCGGATATAACGACAATAATGATTTTAAGCCCAGCT
Found at i:72259924 original size:35 final size:35
Alignment explanation
Indices: 72259813--72259924 Score: 109
Period size: 35 Copynumber: 3.1 Consensus size: 35
72259803 CCTAGCTCTG
*
72259813 GTTGGATTAACCAACAATATTTGCACCCAGTGCTA
1 GTTGGATAAACCAACAATATTTGCACCCAGTGCTA
* * * **
72259848 GTCGGATATATCGACAATAATGATTTTAAGCCCAGCT-CTA
1 GTTGGATA-AAC--CAACAAT-ATTTGCA-CCCAG-TGCTA
72259888 GTTGGATAAACCAACAATATTTGCACCCAGTGCTA
1 GTTGGATAAACCAACAATATTTGCACCCAGTGCTA
72259923 GT
1 GT
72259925 CAGATATACC
Statistics
Matches: 59, Mismatches: 11, Indels: 14
0.70 0.13 0.17
Matches are distributed among these distances:
34 1 0.02
35 16 0.27
36 7 0.12
37 6 0.10
38 6 0.10
39 7 0.12
40 15 0.25
41 1 0.02
ACGTcount: A:0.32, C:0.21, G:0.18, T:0.29
Consensus pattern (35 bp):
GTTGGATAAACCAACAATATTTGCACCCAGTGCTA
Found at i:72259940 original size:35 final size:35
Alignment explanation
Indices: 72259826--72259941 Score: 108
Period size: 35 Copynumber: 3.2 Consensus size: 35
72259816 GGATTAACCA
*
72259826 ACAATATTTGCACCCAGTGCTAGTCGGATATATCG
1 ACAATATTTGCACCCAGTGCTAGTCGGATATACCG
** * * *
72259861 ACAATAATGATTTTAAGCCCAGCT-CTAGTTGGATAAACCA
1 AC---AAT-ATTTGCA-CCCAG-TGCTAGTCGGATATACCG
*
72259901 ACAATATTTGCACCCAGTGCTAGTCAGATATACCG
1 ACAATATTTGCACCCAGTGCTAGTCGGATATACCG
72259936 ACAATA
1 ACAATA
72259942 ATGATTTTGA
Statistics
Matches: 62, Mismatches: 12, Indels: 14
0.70 0.14 0.16
Matches are distributed among these distances:
34 1 0.02
35 25 0.40
36 5 0.08
37 3 0.05
38 3 0.05
39 5 0.08
40 19 0.31
41 1 0.02
ACGTcount: A:0.34, C:0.22, G:0.16, T:0.27
Consensus pattern (35 bp):
ACAATATTTGCACCCAGTGCTAGTCGGATATACCG
Found at i:72260052 original size:75 final size:75
Alignment explanation
Indices: 72259782--72260088 Score: 355
Period size: 75 Copynumber: 4.1 Consensus size: 75
72259772 AGCTGGATTA
*** * * * * *** * * *
72259782 ACCGACAATAATGAAAGTGAGCCTAGCTCTGGTTGGATTAACCAACAATATTTGCACCCAGTGCT
1 ACCGACAATAATGATTTTGAGCCCAACTCTAGTTGGATAAACCAATGGTAATTGCGCCCAGGGCT
72259847 AGTCGGATAT
66 AGTCGGATAT
* * * *** * * *
72259857 ATCGACAATAATGATTTTAAGCCCAGCTCTAGTTGGATAAACCAACAATATTTGCACCCAGTGCT
1 ACCGACAATAATGATTTTGAGCCCAACTCTAGTTGGATAAACCAATGGTAATTGCGCCCAGGGCT
*
72259922 AGTCAGATAT
66 AGTCGGATAT
* *
72259932 ACCGACAATAATGATTTTGAGCCCAACTCTAGTTGGATAAACCAATGGTAATTGTGCTCAGGGCT
1 ACCGACAATAATGATTTTGAGCCCAACTCTAGTTGGATAAACCAATGGTAATTGCGCCCAGGGCT
72259997 AGTCGGATAT
66 AGTCGGATAT
* *
72260007 ACCGATAATAATGATTTTGAGCCCAACTCTAGTTGGATAAACCAATGGTAATTGCGCCCAAGGCT
1 ACCGACAATAATGATTTTGAGCCCAACTCTAGTTGGATAAACCAATGGTAATTGCGCCCAGGGCT
72260072 AGTCGGAT-T
66 AGTCGGATAT
72260081 AACCGACA
1 -ACCGACA
72260089 GTTATGTGCC
Statistics
Matches: 205, Mismatches: 26, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
74 1 0.00
75 204 1.00
ACGTcount: A:0.33, C:0.21, G:0.20, T:0.26
Consensus pattern (75 bp):
ACCGACAATAATGATTTTGAGCCCAACTCTAGTTGGATAAACCAATGGTAATTGCGCCCAGGGCT
AGTCGGATAT
Found at i:72260066 original size:35 final size:35
Alignment explanation
Indices: 72259948--72260067 Score: 96
Period size: 35 Copynumber: 3.3 Consensus size: 35
72259938 AATAATGATT
72259948 TTGAGCCCAACTCTAGTTGGATAAACCAATGGTAA
1 TTGAGCCCAACTCTAGTTGGATAAACCAATGGTAA
* * *** * * ** *
72259983 TTGTGCTCAGGGCTAGTCGGATATACCGATAATAATGATT
1 TTGAGCCCAACTCTAGTTGGATAAACC---AATGGT-A-A
72260023 TTGAGCCCAACTCTAGTTGGATAAACCAATGGTAA
1 TTGAGCCCAACTCTAGTTGGATAAACCAATGGTAA
*
72260058 TTGCGCCCAA
1 TTGAGCCCAA
72260068 GGCTAGTCGG
Statistics
Matches: 59, Mismatches: 21, Indels: 10
0.66 0.23 0.11
Matches are distributed among these distances:
35 29 0.49
36 1 0.02
37 4 0.07
38 4 0.07
39 1 0.02
40 20 0.34
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.28
Consensus pattern (35 bp):
TTGAGCCCAACTCTAGTTGGATAAACCAATGGTAA
Found at i:72260074 original size:35 final size:35
Alignment explanation
Indices: 72259948--72260084 Score: 94
Period size: 35 Copynumber: 3.8 Consensus size: 35
72259938 AATAATGATT
** *
72259948 TTGAGCCCAACTCTAGTTGGATAAACCAATGGTAA
1 TTGAGCCCAAGGCTAGTCGGATAAACCAATGGTAA
* * * * ** *
72259983 TTGTGCTCAGGGCTAGTCGGATATACCGATAATAATGATT
1 TTGAGCCCAAGGCTAGTCGGATAAACC---AATGGT-A-A
** *
72260023 TTGAGCCCAACTCTAGTTGGATAAACCAATGGTAA
1 TTGAGCCCAAGGCTAGTCGGATAAACCAATGGTAA
* *
72260058 TTGCGCCCAAGGCTAGTCGGATTAACC
1 TTGAGCCCAAGGCTAGTCGGATAAACC
72260085 GACAGTTATG
Statistics
Matches: 72, Mismatches: 25, Indels: 10
0.67 0.23 0.09
Matches are distributed among these distances:
35 42 0.58
36 1 0.01
37 4 0.06
38 4 0.06
39 1 0.01
40 20 0.28
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27
Consensus pattern (35 bp):
TTGAGCCCAAGGCTAGTCGGATAAACCAATGGTAA
Found at i:72262810 original size:16 final size:17
Alignment explanation
Indices: 72262789--72262821 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
72262779 TCTCAAAATA
*
72262789 ATAAAGATAA-CAAAAC
1 ATAAAGAAAACCAAAAC
72262805 ATAAAGAAAACCAAAAC
1 ATAAAGAAAACCAAAAC
72262822 CCCTGAGTGG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.70, C:0.15, G:0.06, T:0.09
Consensus pattern (17 bp):
ATAAAGAAAACCAAAAC
Found at i:72266678 original size:18 final size:17
Alignment explanation
Indices: 72266657--72266706 Score: 50
Period size: 16 Copynumber: 3.0 Consensus size: 17
72266647 TAATGAATCT
72266657 AATTCATTATTTTAATAA
1 AATT-ATTATTTTAATAA
** *
72266675 AATTATT-TAGTATTAA
1 AATTATTATTTTAATAA
72266691 AATT-TTATTTTAATAA
1 AATTATTATTTTAATAA
72266707 TAAATTTTAA
Statistics
Matches: 25, Mismatches: 6, Indels: 4
0.71 0.17 0.11
Matches are distributed among these distances:
15 2 0.08
16 16 0.64
17 3 0.12
18 4 0.16
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.52
Consensus pattern (17 bp):
AATTATTATTTTAATAA
Found at i:72267892 original size:16 final size:16
Alignment explanation
Indices: 72267867--72267903 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
72267857 ACTGATCTTT
72267867 ATTGTGTGTATCTGCC
1 ATTGTGTGTATCTGCC
* *
72267883 ATTGTTTGTATCTGTC
1 ATTGTGTGTATCTGCC
72267899 ATTGT
1 ATTGT
72267904 ATGAATGCCA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.14, C:0.14, G:0.22, T:0.51
Consensus pattern (16 bp):
ATTGTGTGTATCTGCC
Found at i:72267902 original size:64 final size:62
Alignment explanation
Indices: 72267821--72268217 Score: 542
Period size: 62 Copynumber: 6.3 Consensus size: 62
72267811 GATTTTGATG
* * *
72267821 TGTTTGTATCTGCCATTGTATGAATGTCATTATCAAACTGATCTTTATTGTGTGTATCTGCCAT
1 TGTTTGTATCTGCCATTGTAT-AAT-ACATTATCAAACTGATGTTTATTGTGTATATCTGCCAT
* * *
72267885 TGTTTGTATCTGTCATTGTATGAATGCCATTATCAAACTGATCTTTATTGTGTATATCTGCCAT
1 TGTTTGTATCTGCCATTGTAT-AAT-ACATTATCAAACTGATGTTTATTGTGTATATCTGCCAT
* *
72267949 TGTTTGTATCTGCCATTGTATGAATGTCATTATCAAATTGATGTTTATTGTGTATATCTGCCAT
1 TGTTTGTATCTGCCATTGTAT-AAT-ACATTATCAAACTGATGTTTATTGTGTATATCTGCCAT
* ** * *
72268013 TGATTGTATCTGCCATTAAATTATACATTATTAAACTGATGTTTATTGTGTATATCTGCCAT
1 TGTTTGTATCTGCCATTGTATAATACATTATCAAACTGATGTTTATTGTGTATATCTGCCAT
** * * *
72268075 TGTTTGTATCTGCCATTAAATTATACATTATTAAACTGATGTTTATTGTGTGTATCTGCCAT
1 TGTTTGTATCTGCCATTGTATAATACATTATCAAACTGATGTTTATTGTGTATATCTGCCAT
** * *
72268137 TGTTTGTATCTGCCATTAAATTATACATTATTAAACTGATGTTTATTGTGTATATCTGCCAT
1 TGTTTGTATCTGCCATTGTATAATACATTATCAAACTGATGTTTATTGTGTATATCTGCCAT
72268199 TGTTTGTATCTGCCATTGT
1 TGTTTGTATCTGCCATTGT
72268218 TTGTATCCAA
Statistics
Matches: 314, Mismatches: 19, Indels: 2
0.94 0.06 0.01
Matches are distributed among these distances:
62 173 0.55
63 2 0.01
64 139 0.44
ACGTcount: A:0.24, C:0.14, G:0.15, T:0.46
Consensus pattern (62 bp):
TGTTTGTATCTGCCATTGTATAATACATTATCAAACTGATGTTTATTGTGTATATCTGCCAT
Found at i:72267947 original size:34 final size:34
Alignment explanation
Indices: 72267848--72267949 Score: 83
Period size: 34 Copynumber: 3.1 Consensus size: 34
72267838 GTATGAATGT
*
72267848 CATTATCAAACTGATCTTTATTGTGTGTATCTGC
1 CATTATCAAACTGATCTTTATTGTGTATATCTGC
* * * *
72267882 CATTGT----TTGTATCTGTCA-T-TGTATGA-ATGC
1 CATTATCAAACTG-ATCT-TTATTGTGTAT-ATCTGC
72267912 CATTATCAAACTGATCTTTATTGTGTATATCTGC
1 CATTATCAAACTGATCTTTATTGTGTATATCTGC
72267946 CATT
1 CATT
72267950 GTTTGTATCT
Statistics
Matches: 49, Mismatches: 9, Indels: 20
0.63 0.12 0.26
Matches are distributed among these distances:
30 14 0.29
31 6 0.12
32 4 0.08
33 6 0.12
34 19 0.39
ACGTcount: A:0.24, C:0.17, G:0.15, T:0.45
Consensus pattern (34 bp):
CATTATCAAACTGATCTTTATTGTGTATATCTGC
Found at i:72268144 original size:16 final size:16
Alignment explanation
Indices: 72268119--72268153 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
72268109 ACTGATGTTT
72268119 ATTGTGTGTATCTGCC
1 ATTGTGTGTATCTGCC
*
72268135 ATTGTTTGTATCTGCC
1 ATTGTGTGTATCTGCC
72268151 ATT
1 ATT
72268154 AAATTATACA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.14, C:0.17, G:0.20, T:0.49
Consensus pattern (16 bp):
ATTGTGTGTATCTGCC
Found at i:72268165 original size:124 final size:126
Alignment explanation
Indices: 72267821--72268217 Score: 618
Period size: 124 Copynumber: 3.2 Consensus size: 126
72267811 GATTTTGATG
*
72267821 TGTTTGTATCTGCCATTGTATGAATGTCATTATCAAACTGATCTTTATTGTGTGTATCTGCCATT
1 TGTTTGTATCTGCCATTGTATGAATGTCATTATCAAACTGATGTTTATTGTGTGTATCTGCCATT
* ** * * * *
72267886 GTTTGTATCTGTCATTGTATGAATGCCATTATCAAACTGATCTTTATTGTGTATATCTGCCAT
66 GTTTGTATCTGCCATTAAAT-TAT-ACATTATTAAACTGATGTTTATTGTGTATATCTGCCAT
* *
72267949 TGTTTGTATCTGCCATTGTATGAATGTCATTATCAAATTGATGTTTATTGTGTATATCTGCCATT
1 TGTTTGTATCTGCCATTGTATGAATGTCATTATCAAACTGATGTTTATTGTGTGTATCTGCCATT
*
72268014 GATTGTATCTGCCATTAAATTATACATTATTAAACTGATGTTTATTGTGTATATCTGCCAT
66 GTTTGTATCTGCCATTAAATTATACATTATTAAACTGATGTTTATTGTGTATATCTGCCAT
** * * *
72268075 TGTTTGTATCTGCCATTAAAT-TAT-ACATTATTAAACTGATGTTTATTGTGTGTATCTGCCATT
1 TGTTTGTATCTGCCATTGTATGAATGTCATTATCAAACTGATGTTTATTGTGTGTATCTGCCATT
72268138 GTTTGTATCTGCCATTAAATTATACATTATTAAACTGATGTTTATTGTGTATATCTGCCAT
66 GTTTGTATCTGCCATTAAATTATACATTATTAAACTGATGTTTATTGTGTATATCTGCCAT
72268199 TGTTTGTATCTGCCATTGT
1 TGTTTGTATCTGCCATTGT
72268218 TTGTATCCAA
Statistics
Matches: 248, Mismatches: 21, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
124 112 0.45
125 2 0.01
126 54 0.22
127 2 0.01
128 78 0.31
ACGTcount: A:0.24, C:0.14, G:0.15, T:0.46
Consensus pattern (126 bp):
TGTTTGTATCTGCCATTGTATGAATGTCATTATCAAACTGATGTTTATTGTGTGTATCTGCCATT
GTTTGTATCTGCCATTAAATTATACATTATTAAACTGATGTTTATTGTGTATATCTGCCAT
Found at i:72268208 original size:16 final size:16
Alignment explanation
Indices: 72268189--72268224 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
72268179 TTATTGTGTA
72268189 TATCTGCCATTGTTTG
1 TATCTGCCATTGTTTG
72268205 TATCTGCCATTGTTTG
1 TATCTGCCATTGTTTG
72268221 TATC
1 TATC
72268225 CAAGCTCCTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.14, C:0.19, G:0.17, T:0.50
Consensus pattern (16 bp):
TATCTGCCATTGTTTG
Found at i:72268533 original size:15 final size:16
Alignment explanation
Indices: 72268513--72268543 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
72268503 GAAAACGTGT
72268513 CTGGTAGTGAT-GTGA
1 CTGGTAGTGATAGTGA
72268528 CTGGTAGTGATAGTGA
1 CTGGTAGTGATAGTGA
72268544 TGCATCTGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 11 0.73
16 4 0.27
ACGTcount: A:0.23, C:0.06, G:0.39, T:0.32
Consensus pattern (16 bp):
CTGGTAGTGATAGTGA
Found at i:72270270 original size:43 final size:43
Alignment explanation
Indices: 72270179--72270356 Score: 247
Period size: 43 Copynumber: 4.2 Consensus size: 43
72270169 TTGCTGATCA
* * *
72270179 CATGCAGTGATTGTTGGAAAGCTATTGACT-TTTTTTAATATG
1 CATGCAATGATTGTTGGAAAGTTGTTGACTATTTTTTAATATG
* *
72270221 TATGCAATGATTATTGGAAAGTTGTTGACTATTTTTTAATATG
1 CATGCAATGATTGTTGGAAAGTTGTTGACTATTTTTTAATATG
72270264 CATGCAATGATTGTTGGAAAGTTGTTGACTATTTTTTAATATG
1 CATGCAATGATTGTTGGAAAGTTGTTGACTATTTTTTAATATG
* * * *
72270307 CATGCAATGATTGTTGG--TG-TGTTGCCTAGTTTTTAATATA
1 CATGCAATGATTGTTGGAAAGTTGTTGACTATTTTTTAATATG
72270347 CATGCAATGA
1 CATGCAATGA
72270357 GTTTTTTTTA
Statistics
Matches: 124, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
40 28 0.23
41 1 0.01
42 25 0.20
43 70 0.56
ACGTcount: A:0.28, C:0.08, G:0.21, T:0.43
Consensus pattern (43 bp):
CATGCAATGATTGTTGGAAAGTTGTTGACTATTTTTTAATATG
Found at i:72271032 original size:21 final size:21
Alignment explanation
Indices: 72271008--72271056 Score: 71
Period size: 21 Copynumber: 2.3 Consensus size: 21
72270998 TGTCCGAACC
*
72271008 CAGCAAGAGGCTACCCCAAGT
1 CAGCAAGAGGCTACCCCAACT
*
72271029 CAGCAAGAGGGTACCCCAACT
1 CAGCAAGAGGCTACCCCAACT
*
72271050 CAACAAG
1 CAGCAAG
72271057 GTGCCCCAAC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.37, C:0.33, G:0.22, T:0.08
Consensus pattern (21 bp):
CAGCAAGAGGCTACCCCAACT
Found at i:72272185 original size:18 final size:18
Alignment explanation
Indices: 72272159--72272196 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
72272149 TTTCCTCTTA
*
72272159 TCCTTCTTCTTCTTC-TCT
1 TCCTGCTTC-TCTTCTTCT
72272177 TCCTGCTTCTCTTCTTCT
1 TCCTGCTTCTCTTCTTCT
72272195 TC
1 TC
72272197 TTTTTCTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 5 0.28
18 13 0.72
ACGTcount: A:0.00, C:0.39, G:0.03, T:0.58
Consensus pattern (18 bp):
TCCTGCTTCTCTTCTTCT
Found at i:72277605 original size:20 final size:20
Alignment explanation
Indices: 72277575--72277619 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
72277565 CTGTTTTATT
72277575 ATGGG-CCAACTGTATTAAA
1 ATGGGCCCAACTGTATTAAA
* *
72277594 ATGGGCCCAACTGTGTTAAT
1 ATGGGCCCAACTGTATTAAA
72277614 ATGGGC
1 ATGGGC
72277620 AAGACCCAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 5 0.22
20 18 0.78
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.27
Consensus pattern (20 bp):
ATGGGCCCAACTGTATTAAA
Found at i:72277749 original size:28 final size:28
Alignment explanation
Indices: 72277648--72277761 Score: 81
Period size: 28 Copynumber: 3.9 Consensus size: 28
72277638 ACTTGTAATA
* * *
72277648 GGGCTACGGCCCAGACTGATACTGATAT
1 GGGCTAAGGCCCAGATTAATACTGATAT
* *
72277676 GGGCT-AGGCCCAGTATGCTCTGATATTG-TAAT
1 GGGCTAAGGCCCAG-A---T-TAATACTGAT-AT
*
72277708 AGGGCTATGGCCCAGATTAATACTGATAT
1 -GGGCTAAGGCCCAGATTAATACTGATAT
*
72277737 GGGCTAAGGCCCAG-TTAACACTGAT
1 GGGCTAAGGCCCAGATTAATACTGAT
72277762 TTCTGAATAG
Statistics
Matches: 69, Mismatches: 8, Indels: 19
0.72 0.08 0.20
Matches are distributed among these distances:
27 17 0.25
28 19 0.28
29 8 0.12
30 2 0.03
31 1 0.01
32 9 0.13
33 6 0.09
34 7 0.10
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (28 bp):
GGGCTAAGGCCCAGATTAATACTGATAT
Found at i:72277782 original size:62 final size:61
Alignment explanation
Indices: 72277640--72277784 Score: 179
Period size: 61 Copynumber: 2.4 Consensus size: 61
72277630 ATATCTCGAC
* * *
72277640 TTGTAATAGGGCTACGGCCCAGACTGATACTGATATGGGCTAGGCCCAGTATGCTCTGATA
1 TTGTAATAGGGCTACGGCCCAGACTAATACTGATATGGGCTAGGCCCAGTATACACTGATA
* *
72277701 TTGTAATAGGGCTATGGCCCAGATTAATACTGATATGGGCTAAGGCCCAGT-TAACACTGAT-
1 TTGTAATAGGGCTACGGCCCAGACTAATACTGATATGGGCT-AGGCCCAGTAT-ACACTGATA
*
72277762 TTCTGAATAGGGCTTA-GGCCCAG
1 TTGT-AATAGGGC-TACGGCCCAG
72277785 TAAAGCTTGA
Statistics
Matches: 74, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
61 42 0.57
62 30 0.41
63 2 0.03
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.27
Consensus pattern (61 bp):
TTGTAATAGGGCTACGGCCCAGACTAATACTGATATGGGCTAGGCCCAGTATACACTGATA
Found at i:72281038 original size:47 final size:47
Alignment explanation
Indices: 72280960--72281366 Score: 688
Period size: 47 Copynumber: 8.6 Consensus size: 47
72280950 CCCTTCGGGA
* * * * * *
72280960 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
72281007 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72281054 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
72281101 CTTATCACATATATAAAATTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72281148 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72281195 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72281244 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72281291 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72281338 CTTATCACATATATATACACTTTCACATT
1 CTTATCAC--ATATATACACTTTCACATT
72281367 TATTCAAATA
Statistics
Matches: 342, Mismatches: 14, Indels: 6
0.94 0.04 0.02
Matches are distributed among these distances:
47 276 0.81
49 66 0.19
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:72281273 original size:143 final size:143
Alignment explanation
Indices: 72280960--72281366 Score: 710
Period size: 143 Copynumber: 2.9 Consensus size: 143
72280950 CCCTTCGGGA
* * * * * * * *
72280960 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
72281025 TTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCACA
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
72281088 TCGGCCATTAGGC
131 TCGGCCATTAGGC
* *
72281101 CTTATCACATATATAAAATTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
72281166 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
72281231 TCGGCCATTAGGC
131 TCGGCCATTAGGC
72281244 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
72281309 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATT
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATT
72281367 TATTCAAATA
Statistics
Matches: 252, Mismatches: 12, Indels: 2
0.95 0.05 0.01
Matches are distributed among these distances:
141 92 0.37
143 160 0.63
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.32
Consensus pattern (143 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
TCGGCCATTAGGC
Found at i:72285696 original size:40 final size:40
Alignment explanation
Indices: 72285651--72285884 Score: 203
Period size: 40 Copynumber: 5.9 Consensus size: 40
72285641 CGAATACACG
* * * *
72285651 TCACCAGCATGATTGCTCTTCGGGACCTAGCCCGGACATA
1 TCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
* * *
72285691 ACACCAGCACGAATGCTCTTCGGG-TTTAGCACGGATATA
1 TCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
* * *
72285730 TCACTAGCACGAATGCTCTTC-GAACTTAGCCCGGATACA
1 TCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
* * *
72285769 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATTTA
1 TCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
* * * *
72285809 GTAACTC-GCACCAATGC-CTTC-GGATCTTAGTCCGGATATGG
1 -TCAC-CAGCACGAATGCTCTTCGGGA-CTTAGCCCGGATAT-A
* *
72285850 TCACTTAGCAC-AAAGC-CTTCGGGACTTAGCCCGGA
1 TCAC-CAGCACGAATGCTCTTCGGGACTTAGCCCGGA
72285885 CATCATTCGA
Statistics
Matches: 158, Mismatches: 28, Indels: 16
0.78 0.14 0.08
Matches are distributed among these distances:
38 1 0.01
39 65 0.41
40 74 0.47
41 18 0.11
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (40 bp):
TCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
Found at i:72286229 original size:29 final size:29
Alignment explanation
Indices: 72286190--72286268 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
72286180 CTTAATAATC
*
72286190 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
72286220 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
72286249 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
72286269 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:72286338 original size:42 final size:43
Alignment explanation
Indices: 72286250--72286351 Score: 197
Period size: 42 Copynumber: 2.4 Consensus size: 43
72286240 TGCATTTCAA
72286250 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
72286293 GCCCGCACACTTAGTGCCAATCTCACAA-CGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
72286335 GCCCGCACACTTAGTGC
1 GCCCGCACACTTAGTGC
72286352 TGAAAACCAA
Statistics
Matches: 59, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
42 31 0.53
43 28 0.47
ACGTcount: A:0.26, C:0.35, G:0.16, T:0.23
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
Done.