Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 221 of 349
Found at i:72287843 original size:47 final size:47
Alignment explanation
Indices: 72287765--72287981 Score: 344
Period size: 47 Copynumber: 4.6 Consensus size: 47
72287755 CCCTTCGGGA
* * * * * *
72287765 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
72287812 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72287859 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72287906 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72287953 CTTATCACATATATATACACTTTCACATT
1 CTTATCAC--ATATATACACTTTCACATT
72287982 TATTCAAATA
Statistics
Matches: 158, Mismatches: 10, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
47 139 0.88
49 19 0.12
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:72295403 original size:30 final size:30
Alignment explanation
Indices: 72295367--72295428 Score: 115
Period size: 30 Copynumber: 2.1 Consensus size: 30
72295357 CCTATAGAAC
72295367 AATTTTAAGTGTTAAAATCTCGATACATAA
1 AATTTTAAGTGTTAAAATCTCGATACATAA
*
72295397 AATTTTAAGTGTTAAAATCTTGATACATAA
1 AATTTTAAGTGTTAAAATCTCGATACATAA
72295427 AA
1 AA
72295429 CTTATGAAGT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.45, C:0.08, G:0.10, T:0.37
Consensus pattern (30 bp):
AATTTTAAGTGTTAAAATCTCGATACATAA
Found at i:72299962 original size:47 final size:47
Alignment explanation
Indices: 72299905--72300208 Score: 407
Period size: 47 Copynumber: 6.4 Consensus size: 47
72299895 ATTGATGTAC
* * * *
72299905 AAGTATATATATGTGATAGGGCCGAGTGGCCAATGTGATGAATATGA
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
*
72299952 AAGTATATATATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
1 AAGTGTATATAT--GTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* *
72300001 ACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
1 A-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* *
72300048 ACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
1 A-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* *
72300095 ACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGA
1 A-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* * *
72300142 AAGTGTATATATGTGATAAGGCCGAATGGCCAATATGATGGATGTGG
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
*
72300189 AAGTGTATAAATGTGATAAG
1 AAGTGTATATATGTGATAAG
72300209 TCCCGAAGGG
Statistics
Matches: 237, Mismatches: 16, Indels: 8
0.91 0.06 0.03
Matches are distributed among these distances:
46 1 0.00
47 196 0.83
49 39 0.16
50 1 0.00
ACGTcount: A:0.34, C:0.10, G:0.30, T:0.27
Consensus pattern (47 bp):
AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
Found at i:72304378 original size:43 final size:43
Alignment explanation
Indices: 72304308--72304389 Score: 112
Period size: 43 Copynumber: 1.9 Consensus size: 43
72304298 ACATGTATCA
* * *
72304308 CATCCATAATGAACTCGGACCATTCAACGAGCTCGGATGCTTG
1 CATCCATAATAAACTCAGACCATTCAACAAGCTCGGATGCTTG
*
72304351 CATCCATAATAAACTCAGA-CTTCTCAACAAGCTCGGATG
1 CATCCATAATAAACTCAGACCAT-TCAACAAGCTCGGATG
72304390 GTACATACCT
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
42 2 0.06
43 32 0.94
ACGTcount: A:0.32, C:0.28, G:0.17, T:0.23
Consensus pattern (43 bp):
CATCCATAATAAACTCAGACCATTCAACAAGCTCGGATGCTTG
Found at i:72308337 original size:39 final size:40
Alignment explanation
Indices: 72308257--72308337 Score: 128
Period size: 39 Copynumber: 2.0 Consensus size: 40
72308247 TTCTATTATC
72308257 TAAGACATTTGTTACCTGATTTATTCAAGAATAAAAATCTA
1 TAAGACATTTGTTACCTGA-TTATTCAAGAATAAAAATCTA
* *
72308298 TAAGACATTTGTTTCCTGA-TATTTAAGAATAAAAATCTA
1 TAAGACATTTGTTACCTGATTATTCAAGAATAAAAATCTA
72308337 T
1 T
72308338 CTTCATATCA
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
39 20 0.53
41 18 0.47
ACGTcount: A:0.41, C:0.11, G:0.10, T:0.38
Consensus pattern (40 bp):
TAAGACATTTGTTACCTGATTATTCAAGAATAAAAATCTA
Found at i:72312915 original size:41 final size:41
Alignment explanation
Indices: 72312786--72312908 Score: 174
Period size: 41 Copynumber: 3.0 Consensus size: 41
72312776 ACACACCAAT
* *
72312786 CTGGCACCTCAGTGCATCATCAAATAAACCAAAGTAAATATA
1 CTGGCACAT-AGTGCATCATCGAATAAACCAAAGTAAATATA
* *
72312828 CTGGCACATAGTGTATCATCGAATAAACCGAAGTAAATATA
1 CTGGCACATAGTGCATCATCGAATAAACCAAAGTAAATATA
* * *
72312869 TTGGCACATAGTGCATCATCGGATACACCAAAGTAAATAT
1 CTGGCACATAGTGCATCATCGAATAAACCAAAGTAAATAT
72312909 GATGGCATGA
Statistics
Matches: 72, Mismatches: 9, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
41 64 0.89
42 8 0.11
ACGTcount: A:0.41, C:0.20, G:0.15, T:0.24
Consensus pattern (41 bp):
CTGGCACATAGTGCATCATCGAATAAACCAAAGTAAATATA
Found at i:72315641 original size:25 final size:25
Alignment explanation
Indices: 72315613--72315662 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
72315603 AAAAAAAAGG
72315613 ACGAGCTATAATTTTTTATTTTATT
1 ACGAGCTATAATTTTTTATTTTATT
72315638 ACGAGCTATAATTTTTTATTTTATT
1 ACGAGCTATAATTTTTTATTTTATT
72315663 TTATGTATTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.28, C:0.08, G:0.08, T:0.56
Consensus pattern (25 bp):
ACGAGCTATAATTTTTTATTTTATT
Found at i:72322187 original size:24 final size:24
Alignment explanation
Indices: 72322156--72322219 Score: 101
Period size: 24 Copynumber: 2.6 Consensus size: 24
72322146 AAAATGAATG
72322156 TTTTTAAGCATTAAATTTCTCGTT
1 TTTTTAAGCATTAAATTTCTCGTT
72322180 TTTTTAAGCATTAAATTTCTCGTT
1 TTTTTAAGCATTAAATTTCTCGTT
* *
72322204 TATTTATCGCATTAAA
1 TTTTTA-AGCATTAAA
72322220 ATAAAAATTC
Statistics
Matches: 37, Mismatches: 2, Indels: 1
0.93 0.05 0.03
Matches are distributed among these distances:
24 29 0.78
25 8 0.22
ACGTcount: A:0.28, C:0.12, G:0.08, T:0.52
Consensus pattern (24 bp):
TTTTTAAGCATTAAATTTCTCGTT
Found at i:72324326 original size:42 final size:42
Alignment explanation
Indices: 72324279--72324413 Score: 137
Period size: 42 Copynumber: 3.2 Consensus size: 42
72324269 CTTACATGGG
* * * *
72324279 ATCTCACATCGATGCCATATCCCAGATATAGTTTTATACGAA
1 ATCTCATATCGACGCCATATCCCAGATATAGTCTTACACGAA
* * * * *
72324321 TTCTCATTTCGACGCCATGTCCCAGATGTGGTCTTACACGAA
1 ATCTCATATCGACGCCATATCCCAGATATAGTCTTACACGAA
* * * *
72324363 ATCTTATATCAACGCCATATCCCAGATATGGTCTTACATGATA
1 ATCTCATATCGACGCCATATCCCAGATATAGTCTTACACGA-A
72324406 A-CTCATAT
1 ATCTCATAT
72324414 TGATGCCGAT
Statistics
Matches: 75, Mismatches: 17, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
42 73 0.97
43 2 0.03
ACGTcount: A:0.30, C:0.25, G:0.13, T:0.32
Consensus pattern (42 bp):
ATCTCATATCGACGCCATATCCCAGATATAGTCTTACACGAA
Found at i:72325171 original size:10 final size:9
Alignment explanation
Indices: 72325147--72325172 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
72325137 TTCAATGATC
72325147 TCAAAAACA
1 TCAAAAACA
72325156 TCAAAAACA
1 TCAAAAACA
72325165 TCAAAAAC
1 TCAAAAAC
72325173 TAACACCAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.65, C:0.23, G:0.00, T:0.12
Consensus pattern (9 bp):
TCAAAAACA
Found at i:72326991 original size:47 final size:45
Alignment explanation
Indices: 72326923--72327281 Score: 206
Period size: 47 Copynumber: 7.7 Consensus size: 45
72326913 TTTGTGCACC
** *
72326923 AGTGTAAGATGTGTCTGGGACATGCTTCGGCCACATTATGAGAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACA-TATGAGAGCT
* * *
72326969 AGTGTAAGACCATGTCTGGGACATGGCATCAG-CATCCAGT-CGAGGGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCA--CA-TATGAGAGCT
* ** * * *
72327017 AGTGTAAGACATGTCTGGGACATCCATCATCCATACTATGATAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACA-TATGAGAGCT
** * * * * *
72327063 AGTGTAAGACCATGTCTGGGATGTGGCACCGGCACAGAGATGAGTGCC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-CACATATGAGAGCT
* * *
72327111 AGTGTAAGACATGTCTGGGACATGCATTGGCCTCGACAGA-GATAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGG-C-C-ACATATGAGAGCT
* * ** * * * *
72327158 AGTTTAAGACGTGTCTGGGACACACATCGGCTA-AGA-GTTGTGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACATATG-AGAGCT
* * * *
72327202 AGTGTAGGACATGTCTGGGACATGCATCAGCACGCGTATATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGC-CAC--ATATGAGAGCT
72327250 AGTGTAAGACCATGTCTGGGACATGGCATCGG
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGG
72327282 TAATATATCC
Statistics
Matches: 237, Mismatches: 57, Indels: 34
0.72 0.17 0.10
Matches are distributed among these distances:
43 4 0.02
44 29 0.12
45 2 0.01
46 33 0.14
47 85 0.36
48 57 0.24
49 21 0.09
50 6 0.03
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.23
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCACATATGAGAGCT
Found at i:72327090 original size:94 final size:94
Alignment explanation
Indices: 72326921--72327277 Score: 248
Period size: 94 Copynumber: 3.8 Consensus size: 94
72326911 GATTTGTGCA
** * * * * *
72326921 CCAGTGTAAGATGTGTCTGGGACATGCTTCGGCCACATTATGAGAGCTAGTGTAAGACCATGTCT
1 CCAGTGTAAGACATGTCTGGGACATCCATCAGCCACACTATGAGAGCCAGTGTAAGACCATGTCT
*
72326986 GGGACATGGCATCAGCATC-CAG-TCGAGGG
66 GGGACATGGCACCAGCA-CACAGAT-GAGGG
* * * *
72327015 CTAGTGTAAGACATGTCTGGGACATCCATCATCCATACTATGATAGCCAGTGTAAGACCATGTCT
1 CCAGTGTAAGACATGTCTGGGACATCCATCAGCCACACTATGAGAGCCAGTGTAAGACCATGTCT
** * * *
72327080 GGGATGTGGCACCGGCACAGAGATGAGTG
66 GGGACATGGCACCAGCACACAGATGAGGG
* ** * * * *
72327109 CCAGTGTAAGACATGTCTGGGACATGCATTGGCCTCGAC-A-GAGATAGCTAGTTTAAGA-CGTG
1 CCAGTGTAAGACATGTCTGGGACATCCATCAGCCAC-ACTATGAG--AGCCAGTGTAAGACCATG
** * * * * *
72327171 TCTGGGACA-CACATCGGC-TA-AGA-GTTGTG
63 TCTGGGACATGGCACCAGCACACAGATG-AGGG
* * * *
72327200 CTAGTGTAGGACATGTCTGGGACATGCATCAG-CACGCGTATATGAGAGCCAGTGTAAGACCATG
1 CCAGTGTAAGACATGTCTGGGACATCCATCAGCCACAC---TATGAGAGCCAGTGTAAGACCATG
72327264 TCTGGGACATGGCA
63 TCTGGGACATGGCA
72327278 TCGGTAATAT
Statistics
Matches: 204, Mismatches: 46, Indels: 26
0.74 0.17 0.09
Matches are distributed among these distances:
89 1 0.00
90 3 0.01
91 34 0.17
92 12 0.06
93 22 0.11
94 118 0.58
95 14 0.07
ACGTcount: A:0.26, C:0.21, G:0.30, T:0.23
Consensus pattern (94 bp):
CCAGTGTAAGACATGTCTGGGACATCCATCAGCCACACTATGAGAGCCAGTGTAAGACCATGTCT
GGGACATGGCACCAGCACACAGATGAGGG
Found at i:72330333 original size:40 final size:40
Alignment explanation
Indices: 72330303--72330488 Score: 234
Period size: 40 Copynumber: 4.7 Consensus size: 40
72330293 GCTACTCGTT
* *
72330303 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
72330343 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
72330383 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * * * *
72330423 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
* *
72330464 CAAA-GCCTCCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
72330489 CATCATTCAA
Statistics
Matches: 132, Mismatches: 10, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
39 3 0.02
40 116 0.88
41 13 0.10
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:72333373 original size:22 final size:22
Alignment explanation
Indices: 72333348--72333408 Score: 68
Period size: 24 Copynumber: 2.7 Consensus size: 22
72333338 CCTGAGCTGA
72333348 TAAACAGTAAGCTCTATTAAGC
1 TAAACAGTAAGCTCTATTAAGC
*
72333370 TAAAAACAGTAAGCTCTATTGAGC
1 T--AAACAGTAAGCTCTATTAAGC
* **
72333394 TGAATTGTAAGCTCT
1 TAAACAGTAAGCTCT
72333409 TTCTAGTTGA
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
22 12 0.36
24 21 0.64
ACGTcount: A:0.38, C:0.16, G:0.16, T:0.30
Consensus pattern (22 bp):
TAAACAGTAAGCTCTATTAAGC
Found at i:72333380 original size:24 final size:24
Alignment explanation
Indices: 72333349--72333394 Score: 83
Period size: 24 Copynumber: 1.9 Consensus size: 24
72333339 CTGAGCTGAT
72333349 AAACAGTAAGCTCTATTAAGCTAA
1 AAACAGTAAGCTCTATTAAGCTAA
*
72333373 AAACAGTAAGCTCTATTGAGCT
1 AAACAGTAAGCTCTATTAAGCT
72333395 GAATTGTAAG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.41, C:0.17, G:0.15, T:0.26
Consensus pattern (24 bp):
AAACAGTAAGCTCTATTAAGCTAA
Found at i:72337617 original size:46 final size:46
Alignment explanation
Indices: 72337567--72337742 Score: 200
Period size: 46 Copynumber: 3.8 Consensus size: 46
72337557 TGGTTGAGCA
72337567 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
72337613 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
72337658 CATCCGAACTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
72337706 -CCTGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
72337743 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 11, Indels: 20
0.78 0.08 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 5 0.05
46 60 0.55
47 28 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:72337723 original size:93 final size:93
Alignment explanation
Indices: 72337564--72337735 Score: 301
Period size: 93 Copynumber: 1.8 Consensus size: 93
72337554 GGATGGTTGA
*
72337564 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
72337629 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
72337657 GCATCCGAACTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCTGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC-GAACTCGTTGAG
72337721 TTGAGTCCGAGTTCG
65 TTGAGTCCGAGTTCG
72337736 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 2 0.03
93 73 0.97
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:72342079 original size:22 final size:22
Alignment explanation
Indices: 72342054--72342102 Score: 98
Period size: 22 Copynumber: 2.2 Consensus size: 22
72342044 CCTCATGAGA
72342054 GGAATTATCCTACTCACGATTT
1 GGAATTATCCTACTCACGATTT
72342076 GGAATTATCCTACTCACGATTT
1 GGAATTATCCTACTCACGATTT
72342098 GGAAT
1 GGAAT
72342103 CATCATTATC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.29, C:0.20, G:0.16, T:0.35
Consensus pattern (22 bp):
GGAATTATCCTACTCACGATTT
Found at i:72344021 original size:22 final size:22
Alignment explanation
Indices: 72343993--72344039 Score: 94
Period size: 22 Copynumber: 2.1 Consensus size: 22
72343983 GGGGTTCGAT
72343993 ACTCTAATTACAAATTCAGTAG
1 ACTCTAATTACAAATTCAGTAG
72344015 ACTCTAATTACAAATTCAGTAG
1 ACTCTAATTACAAATTCAGTAG
72344037 ACT
1 ACT
72344040 ATACAGGGAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.40, C:0.19, G:0.09, T:0.32
Consensus pattern (22 bp):
ACTCTAATTACAAATTCAGTAG
Found at i:72345422 original size:28 final size:28
Alignment explanation
Indices: 72345382--72345467 Score: 172
Period size: 28 Copynumber: 3.1 Consensus size: 28
72345372 TGAGTGGGAG
72345382 TAAGCACATTACATTCAACATCGTTAGC
1 TAAGCACATTACATTCAACATCGTTAGC
72345410 TAAGCACATTACATTCAACATCGTTAGC
1 TAAGCACATTACATTCAACATCGTTAGC
72345438 TAAGCACATTACATTCAACATCGTTAGC
1 TAAGCACATTACATTCAACATCGTTAGC
72345466 TA
1 TA
72345468 CAGCTTGTTT
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 58 1.00
ACGTcount: A:0.36, C:0.24, G:0.10, T:0.29
Consensus pattern (28 bp):
TAAGCACATTACATTCAACATCGTTAGC
Found at i:72347570 original size:80 final size:79
Alignment explanation
Indices: 72347486--72347657 Score: 220
Period size: 79 Copynumber: 2.2 Consensus size: 79
72347476 GGACTAAGAT
*
72347486 CCGAAGGCATTTGTGCGAGATA-CAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACT
1 CCGAAGGCATTTGTGCGAGATATCAAA-TCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACT
* *
72347550 AAATCCGGGTTAAGTC
64 AAAACCGGGCTAAGTC
* * * * * * *
72347566 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
*
72347631 AACCGGGCTATGTC
66 AACCGGGCTAAGTC
72347645 CCGAAGGCATTTG
1 CCGAAGGCATTTG
72347658 AACGAGGAGC
Statistics
Matches: 79, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
79 38 0.48
80 38 0.48
81 3 0.04
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
AACCGGGCTAAGTC
Found at i:72347637 original size:39 final size:39
Alignment explanation
Indices: 72347433--72347655 Score: 209
Period size: 40 Copynumber: 5.6 Consensus size: 39
72347423 TTGAATGCTG
* * * * *
72347433 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTA-AGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGA-T-ACTAAA
**
72347473 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATAC-AAA
1 TCCGGGTTAAG-TCCCGAAGGCA-TTGTGCGAGATACTAAA
* *
72347512 TTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
1 -TCCGGGTTAAGTCCCGAAGG-CATTGTGCGAGATACTAAA
* *
72347553 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGATACTAAA
* * *
72347593 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAA
* * *
72347632 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
72347656 TGAACGAGGA
Statistics
Matches: 157, Mismatches: 18, Indels: 17
0.82 0.09 0.09
Matches are distributed among these distances:
39 40 0.25
40 103 0.66
41 13 0.08
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAA
Found at i:72347675 original size:79 final size:80
Alignment explanation
Indices: 72347513--72347690 Score: 191
Period size: 79 Copynumber: 2.2 Consensus size: 80
72347503 AGATACAAAT
* * * *
72347513 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
** * *
72347578 GTGCGAGTTATTAAA
66 GAACGAGTGACTAAA
* * * * *
72347593 TCCGGGTTATGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
*
72347657 GAACGAG-GAGCTATA
66 GAACGAGTGA-CTAAA
*
72347672 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
72347691 TACGTGATTT
Statistics
Matches: 81, Mismatches: 16, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
78 15 0.19
79 48 0.59
80 18 0.22
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
GAACGAGTGACTAAA
Found at i:72349492 original size:11 final size:11
Alignment explanation
Indices: 72349476--72349523 Score: 55
Period size: 11 Copynumber: 4.4 Consensus size: 11
72349466 TGTTTATATC
72349476 CATACCAAAAT
1 CATACCAAAAT
72349487 CATACC-AAAT
1 CATACCAAAAT
*
72349497 CATAATCCAAAGT
1 CAT-A-CCAAAAT
72349510 CATACCAAAA-
1 CATACCAAAAT
72349520 CATA
1 CATA
72349524 TGTTTCATAA
Statistics
Matches: 32, Mismatches: 2, Indels: 7
0.78 0.05 0.17
Matches are distributed among these distances:
10 11 0.34
11 12 0.38
12 3 0.09
13 6 0.19
ACGTcount: A:0.52, C:0.27, G:0.02, T:0.19
Consensus pattern (11 bp):
CATACCAAAAT
Found at i:72349506 original size:23 final size:23
Alignment explanation
Indices: 72349480--72349523 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
72349470 TATATCCATA
*
72349480 CCAAAATCATACCAAATCATAAT
1 CCAAAATCATACCAAAACATAAT
*
72349503 CCAAAGTCATACCAAAACATA
1 CCAAAATCATACCAAAACATA
72349524 TGTTTCATAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.52, C:0.27, G:0.02, T:0.18
Consensus pattern (23 bp):
CCAAAATCATACCAAAACATAAT
Found at i:72350305 original size:42 final size:41
Alignment explanation
Indices: 72350240--72350372 Score: 135
Period size: 42 Copynumber: 3.1 Consensus size: 41
72350230 TCCCAAATGT
72350240 AATCAAATATCGATGCCACTGTCCCAAACAGGGTCTTACACGA
1 AATCAAATA-CGATGCCA-TGTCCCAAACAGGGTCTTACACGA
* * *
72350283 AATCAAATACGATGCCGATGTCCCAGATATGGTCTTACACGTA
1 AATCAAATACGATGCC-ATGTCCCAAACAGGGTCTTACACG-A
* * *
72350326 AATCTCAAAT-CGATGCCAAGTCCC-AGCTGTGGTCTTACACGA
1 AA--TCAAATACGATGCCATGTCCCAAACAG-GGTCTTACACGA
72350368 AATCA
1 AATCA
72350373 CATATTGGAA
Statistics
Matches: 76, Mismatches: 9, Indels: 13
0.78 0.09 0.13
Matches are distributed among these distances:
40 3 0.04
42 30 0.39
43 30 0.39
44 7 0.09
45 6 0.08
ACGTcount: A:0.33, C:0.26, G:0.17, T:0.23
Consensus pattern (41 bp):
AATCAAATACGATGCCATGTCCCAAACAGGGTCTTACACGA
Found at i:72350329 original size:43 final size:41
Alignment explanation
Indices: 72350240--72350372 Score: 151
Period size: 43 Copynumber: 3.1 Consensus size: 41
72350230 TCCCAAATGT
* * *
72350240 AATCAAATATCGATGCCACTGTCCCAAACAGGGTCTTACACGA
1 AATCAAATA-CGATGCCA-TGTCCCAGATATGGTCTTACACGA
72350283 AATCAAATACGATGCCGATGTCCCAGATATGGTCTTACACGTA
1 AATCAAATACGATGCC-ATGTCCCAGATATGGTCTTACACG-A
* * *
72350326 AATCTCAAAT-CGATGCCAAGTCCCAGCTGTGGTCTTACACGA
1 AA--TCAAATACGATGCCATGTCCCAGATATGGTCTTACACGA
72350368 AATCA
1 AATCA
72350373 CATATTGGAA
Statistics
Matches: 80, Mismatches: 6, Indels: 11
0.82 0.06 0.11
Matches are distributed among these distances:
40 3 0.04
42 30 0.38
43 34 0.43
44 7 0.09
45 6 0.08
ACGTcount: A:0.33, C:0.26, G:0.17, T:0.23
Consensus pattern (41 bp):
AATCAAATACGATGCCATGTCCCAGATATGGTCTTACACGA
Found at i:72352440 original size:279 final size:279
Alignment explanation
Indices: 72351940--72352497 Score: 936
Period size: 279 Copynumber: 2.0 Consensus size: 279
72351930 CAATAGCATA
*
72351940 GTCACTAGCATCATACATGATTAAAAAAGGTTTTGTCCAGTTCGTGCTTATTATAGTTGGATTTA
1 GTCACTAGCATCATACATGATTAAAAAAGGTTCTGTCCAGTTCGTGCTTATTATAGTTGGATTTA
* * *
72352005 AGACTAGTTTTTGCTTCAATACCTCTAATGCTTGAGCACACTTCTTGTTAAATACAAATGGTGTG
66 AGACTAGTTTTTACTTCAATACCTCGAATGCTTGAGCACACTTCTTGTCAAATACAAATGGTGTG
* * * * *
72352070 TCTTTCTATAATAGTTAAGTTAAAAGTTTTGCAATATGGGAGTAGTTTTTGATGAATCATCTATA
131 TCCTTCTATAAGAGTTAAGTTAAAAGTTTTGCAATATAGGAGAAGTCTTTGATGAATCATCTATA
*
72352135 AAATTTGGTGTAGCTTAGAAAGTTCTGAATTTCAAGGACTGACGTTGGATGTGGAAATTTCTCAA
196 AAATTTAGTGTAGCTTAGAAAGTTCTGAATTTCAAGGACTGACGTTGGATGTGGAAATTTCTCAA
72352200 TGAATTCAATCTTGGTTTT
261 TGAATTCAATCTTGGTTTT
*
72352219 GTCACTAGCATCATACATGATTACAAAAGGTTCTGTCCAGTTCGTGCTTATTATAGTTGGATTTA
1 GTCACTAGCATCATACATGATTAAAAAAGGTTCTGTCCAGTTCGTGCTTATTATAGTTGGATTTA
* *
72352284 AGACTAGTTTTTACTTCACTACCTCGAATGCTTGAGCACACTTGTTGTCAAATACAAATGGTGTG
66 AGACTAGTTTTTACTTCAATACCTCGAATGCTTGAGCACACTTCTTGTCAAATACAAATGGTGTG
* * * *
72352349 TCCTTGTATAAGAGTTAAGTTAAAGGTTTTGCAATATAGGAGAAGTCTTTGATGACTCGTCTATA
131 TCCTTCTATAAGAGTTAAGTTAAAAGTTTTGCAATATAGGAGAAGTCTTTGATGAATCATCTATA
* * *
72352414 AAATTTAGTGTGGCTTAGAAAGTTCTGAATTTCACGGACTGACGTTGGATGTGGCAATTTCTCAA
196 AAATTTAGTGTAGCTTAGAAAGTTCTGAATTTCAAGGACTGACGTTGGATGTGGAAATTTCTCAA
72352479 TGAATTCAATCTTGGTTTT
261 TGAATTCAATCTTGGTTTT
72352498 TTCCACTTTC
Statistics
Matches: 259, Mismatches: 20, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
279 259 1.00
ACGTcount: A:0.29, C:0.14, G:0.20, T:0.38
Consensus pattern (279 bp):
GTCACTAGCATCATACATGATTAAAAAAGGTTCTGTCCAGTTCGTGCTTATTATAGTTGGATTTA
AGACTAGTTTTTACTTCAATACCTCGAATGCTTGAGCACACTTCTTGTCAAATACAAATGGTGTG
TCCTTCTATAAGAGTTAAGTTAAAAGTTTTGCAATATAGGAGAAGTCTTTGATGAATCATCTATA
AAATTTAGTGTAGCTTAGAAAGTTCTGAATTTCAAGGACTGACGTTGGATGTGGAAATTTCTCAA
TGAATTCAATCTTGGTTTT
Found at i:72354997 original size:33 final size:33
Alignment explanation
Indices: 72354955--72355021 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
72354945 ACTGATGCCG
72354955 TTTGTTTCTATAGAAACTAGACTCAGAGAGGAA
1 TTTGTTTCTATAGAAACTAGACTCAGAGAGGAA
72354988 TTTGTTTCTATAGAAACTAGACTCAGAGAGGAA
1 TTTGTTTCTATAGAAACTAGACTCAGAGAGGAA
72355021 T
1 T
72355022 CTGTACATAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.36, C:0.12, G:0.21, T:0.31
Consensus pattern (33 bp):
TTTGTTTCTATAGAAACTAGACTCAGAGAGGAA
Found at i:72356256 original size:28 final size:28
Alignment explanation
Indices: 72356193--72356399 Score: 299
Period size: 28 Copynumber: 7.4 Consensus size: 28
72356183 ATTTTAAGTC
* *
72356193 CGCACACTCAATGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
72356220 CGCACACTTAGTGCTATAAAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
72356248 CGCACACTTAGTGCTACACAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
72356276 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
72356304 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
72356332 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
72356360 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
72356389 CGCACACTTAG
1 CGCACACTTAG
72356400 CGCCAATCCC
Statistics
Matches: 167, Mismatches: 11, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
27 20 0.12
28 131 0.78
29 16 0.10
ACGTcount: A:0.35, C:0.29, G:0.11, T:0.25
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:72363596 original size:66 final size:66
Alignment explanation
Indices: 72363490--72363621 Score: 264
Period size: 66 Copynumber: 2.0 Consensus size: 66
72363480 TTTCCGCGAG
72363490 AATGTTTTTGTGAAAGCCTTGTGATTATTGGTCCATGCTTATGATGTATGAAATACATGGTAAAT
1 AATGTTTTTGTGAAAGCCTTGTGATTATTGGTCCATGCTTATGATGTATGAAATACATGGTAAAT
72363555 T
66 T
72363556 AATGTTTTTGTGAAAGCCTTGTGATTATTGGTCCATGCTTATGATGTATGAAATACATGGTAAAT
1 AATGTTTTTGTGAAAGCCTTGTGATTATTGGTCCATGCTTATGATGTATGAAATACATGGTAAAT
72363621 T
66 T
72363622 CAGTTGGCGA
Statistics
Matches: 66, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
66 66 1.00
ACGTcount: A:0.29, C:0.09, G:0.21, T:0.41
Consensus pattern (66 bp):
AATGTTTTTGTGAAAGCCTTGTGATTATTGGTCCATGCTTATGATGTATGAAATACATGGTAAAT
T
Found at i:72366413 original size:44 final size:44
Alignment explanation
Indices: 72366349--72366493 Score: 204
Period size: 44 Copynumber: 3.3 Consensus size: 44
72366339 TATGTGTTAT
* * *
72366349 CGTGTAAGACCATGTTTGGGACGTTGGCATCGATTTGTGATTTA
1 CGTGTAAGACCTTGTCTGGGACATTGGCATCGATTTGTGATTTA
*
72366393 CGTGTAAGACCTTGTCTGGGATATTGGCATCGATTTGTGATTTA
1 CGTGTAAGACCTTGTCTGGGACATTGGCATCGATTTGTGATTTA
* * *
72366437 TGTGTAAGACCTTGTCTGGGACATTGGCATC-ATATATGATTT-
1 CGTGTAAGACCTTGTCTGGGACATTGGCATCGATTTGTGATTTA
*
72366479 CGTGTAAGAACTTGT
1 CGTGTAAGACCTTGT
72366494 GTATATTTGG
Statistics
Matches: 91, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
42 13 0.14
43 9 0.10
44 69 0.76
ACGTcount: A:0.22, C:0.14, G:0.27, T:0.37
Consensus pattern (44 bp):
CGTGTAAGACCTTGTCTGGGACATTGGCATCGATTTGTGATTTA
Found at i:72371128 original size:21 final size:22
Alignment explanation
Indices: 72371088--72371128 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
72371078 CCTCTAAGTT
* *
72371088 TGGTTTTGATTATGTTTGGTTA
1 TGGTTTTAACTATGTTTGGTTA
72371110 TGGTTTTAACTAT-TTTGGT
1 TGGTTTTAACTATGTTTGGT
72371129 GATGATGCTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 6 0.35
22 11 0.65
ACGTcount: A:0.15, C:0.02, G:0.24, T:0.59
Consensus pattern (22 bp):
TGGTTTTAACTATGTTTGGTTA
Found at i:72377572 original size:39 final size:40
Alignment explanation
Indices: 72377368--72377590 Score: 245
Period size: 40 Copynumber: 5.6 Consensus size: 40
72377358 TTGAATGCTG
* * * * * *
72377368 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAAA
* * * *
72377408 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAA
*
72377448 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
**
72377488 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* *
72377528 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* * *
72377567 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
72377591 TGAACGAGGA
Statistics
Matches: 161, Mismatches: 19, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
39 35 0.22
40 118 0.73
41 8 0.05
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
Found at i:72377610 original size:79 final size:80
Alignment explanation
Indices: 72377443--72377625 Score: 226
Period size: 79 Copynumber: 2.3 Consensus size: 80
72377433 GTGCGAGATA
* * *
72377443 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
** **
72377508 CATTCGTGCGAGTTG
66 CATTCGAACGAGGAG
* * * *
72377523 TTAAATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
*
72377587 CATTTGAACGAGGAG
66 CATTCGAACGAGGAG
* *
72377602 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
72377626 TACGTGATTT
Statistics
Matches: 87, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
78 14 0.16
79 46 0.53
80 27 0.31
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.26
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
CATTCGAACGAGGAG
Found at i:72501415 original size:39 final size:40
Alignment explanation
Indices: 72501290--72501474 Score: 207
Period size: 40 Copynumber: 4.7 Consensus size: 40
72501280 GCTACTCGTT
*
72501290 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
72501330 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
72501370 CCAATGCCTTCGGG-CTTAGCCTGGAATTAGTATCTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
72501409 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
72501450 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
72501475 CATCATTCGA
Statistics
Matches: 121, Mismatches: 19, Indels: 10
0.81 0.13 0.07
Matches are distributed among these distances:
38 2 0.02
39 30 0.25
40 77 0.64
41 12 0.10
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:72501434 original size:79 final size:80
Alignment explanation
Indices: 72501292--72501474 Score: 203
Period size: 79 Copynumber: 2.3 Consensus size: 80
72501282 TACTCGTTCA
* * *
72501292 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATGCCTTCGGGACTTAACCCGGAT
* *
72501357 TTAGTAAC-TCGCACC
66 ATAGTAACTTAGCA-C
* * **
72501372 AATGCCTTCGGG-CTTAGCCTGGA-ATTAGTATCTCACACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCACACAAATGCCTTCGGGA-CTTAACCCGG
* *
72501434 ATATGGTCACTTAGCAC
64 ATATAGTAACTTAGCAC
*
72501451 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
72501475 CATCATTCGA
Statistics
Matches: 86, Mismatches: 13, Indels: 8
0.80 0.12 0.07
Matches are distributed among these distances:
78 4 0.05
79 56 0.65
80 26 0.30
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (80 bp):
AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATGCCTTCGGGACTTAACCCGGAT
ATAGTAACTTAGCAC
Found at i:72506499 original size:29 final size:29
Alignment explanation
Indices: 72506462--72506564 Score: 102
Period size: 29 Copynumber: 3.6 Consensus size: 29
72506452 GATTGAAGAA
72506462 CTCGCACACACAGTGCCTCAATTACTGAT
1 CTCGCACACACAGTGCCTCAATTACTGAT
* ** **
72506491 CTCGCACACATAGTG-CTCGGTTAAAGGAAT
1 CTCGCACACACAGTGCCTCAATT-ACTG-AT
*
72506521 -TTGCACACACAGTGCCTCAATTACTGAT
1 CTCGCACACACAGTGCCTCAATTACTGAT
* *
72506549 CTTGCACACATAGTGC
1 CTCGCACACACAGTGC
72506565 TCGGTTAAAA
Statistics
Matches: 58, Mismatches: 12, Indels: 8
0.74 0.15 0.10
Matches are distributed among these distances:
28 7 0.12
29 44 0.76
30 7 0.12
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.25
Consensus pattern (29 bp):
CTCGCACACACAGTGCCTCAATTACTGAT
Found at i:72506542 original size:58 final size:57
Alignment explanation
Indices: 72506431--72506595 Score: 249
Period size: 58 Copynumber: 2.9 Consensus size: 57
72506421 CCCACTGACC
* * * * *
72506431 GATCTCGCACACATAGTGCTTGATTGAAGAACTCGCACACACAGTGCCTCAATTACT
1 GATCTCGCACACATAGTGCTCGGTTAAAGAATTTGCACACACAGTGCCTCAATTACT
72506488 GATCTCGCACACATAGTGCTCGGTTAAAGGAATTTGCACACACAGTGCCTCAATTACT
1 GATCTCGCACACATAGTGCTCGGTTAAA-GAATTTGCACACACAGTGCCTCAATTACT
* *
72506546 GATCTTGCACACATAGTGCTCGGTTAAAAGAATTTGCACACATAGTGCCT
1 GATCTCGCACACATAGTGCTCGGTT-AAAGAATTTGCACACACAGTGCCT
72506596 TTAATCATTT
Statistics
Matches: 99, Mismatches: 7, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
57 25 0.25
58 71 0.72
59 3 0.03
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (57 bp):
GATCTCGCACACATAGTGCTCGGTTAAAGAATTTGCACACACAGTGCCTCAATTACT
Found at i:72506582 original size:29 final size:29
Alignment explanation
Indices: 72506494--72506593 Score: 114
Period size: 29 Copynumber: 3.4 Consensus size: 29
72506484 TACTGATCTC
*
72506494 GCACACATAGTGCTCGGTTAAAGGAATTT
1 GCACACATAGTGCTCGGTTAAAAGAATTT
* ** **
72506523 GCACACACAGTGCCTCAATT-ACTG-ATCTT
1 GCACACATAGTG-CTCGGTTAAAAGAAT-TT
72506552 GCACACATAGTGCTCGGTTAAAAGAATTT
1 GCACACATAGTGCTCGGTTAAAAGAATTT
72506581 GCACACATAGTGC
1 GCACACATAGTGC
72506594 CTTTAATCAT
Statistics
Matches: 57, Mismatches: 10, Indels: 8
0.76 0.13 0.11
Matches are distributed among these distances:
28 7 0.12
29 43 0.75
30 7 0.12
ACGTcount: A:0.31, C:0.23, G:0.20, T:0.26
Consensus pattern (29 bp):
GCACACATAGTGCTCGGTTAAAAGAATTT
Found at i:72506811 original size:43 final size:42
Alignment explanation
Indices: 72506750--72506885 Score: 193
Period size: 43 Copynumber: 3.2 Consensus size: 42
72506740 CCTTGCTCGA
*
72506750 ATCACCGGCA-TTAAGCCTGCTAGGCACGAAGACCCGAATACAC
1 ATCACCGGCACGT-AGCCTGCTAGGCACGAAG-CCCGAATACAC
72506793 ATCACCGGCACGTAGCCTGCTAGGCACGAATGCCCGAATACAC
1 ATCACCGGCACGTAGCCTGCTAGGCACGAA-GCCCGAATACAC
* * *
72506836 ATCACTGGCACGAATCCTGCTAGGCACGAAGGCCCGAATACAC
1 ATCACCGGCACGTAGCCTGCTAGGCACGAA-GCCCGAATACAC
72506879 ATCACCG
1 ATCACCG
72506886 AGTTTCATGC
Statistics
Matches: 85, Mismatches: 6, Indels: 4
0.89 0.06 0.04
Matches are distributed among these distances:
43 83 0.98
44 2 0.02
ACGTcount: A:0.30, C:0.34, G:0.22, T:0.14
Consensus pattern (42 bp):
ATCACCGGCACGTAGCCTGCTAGGCACGAAGCCCGAATACAC
Found at i:72508580 original size:38 final size:38
Alignment explanation
Indices: 72508443--72508569 Score: 139
Period size: 38 Copynumber: 3.3 Consensus size: 38
72508433 AAACCTGAAC
* * * * *
72508443 ATAAAACCAGCACGAAGCCTACGGGACTTTAAACTCAGA-
1 ATAATACCAGCACGAAGCCTGCGAGA-TTT-AACCCGGAT
* * * *
72508482 ATAATACCAGCACTAGGCCTTCGGGATTTAACCCGGAT
1 ATAATACCAGCACGAAGCCTGCGAGATTTAACCCGGAT
72508520 ATAATACCAGCACGAAGCCTGCGAGATTTAACCCGGAT
1 ATAATACCAGCACGAAGCCTGCGAGATTTAACCCGGAT
*
72508558 ATAATTCCAGCA
1 ATAATACCAGCA
72508570 TATAGCCTGC
Statistics
Matches: 76, Mismatches: 11, Indels: 3
0.84 0.12 0.03
Matches are distributed among these distances:
37 6 0.08
38 48 0.63
39 22 0.29
ACGTcount: A:0.35, C:0.26, G:0.19, T:0.20
Consensus pattern (38 bp):
ATAATACCAGCACGAAGCCTGCGAGATTTAACCCGGAT
Found at i:72508589 original size:77 final size:78
Alignment explanation
Indices: 72508443--72508598 Score: 167
Period size: 77 Copynumber: 2.0 Consensus size: 78
72508433 AAACCTGAAC
* * * *
72508443 ATAAAACCAGCACGAAGCCTACGGGACTTTAAACTCAGAATAATACCAGCACTAGGCCTTCGGGA
1 ATAAAACCAGCACGAAGCCTACGAGACTTTAAACCCAGAATAATACCAGCACTAAGCCTGCGGGA
*
72508508 TTTAA-CCCGGAT
66 TTTAAGCCCAGAT
* * * *
72508520 ATAATACCAGCACGAAGCCTGCGAGA-TTT-AACCCGGATATAATTCCAGCA-TATAGCCTGCGG
1 ATAAAACCAGCACGAAGCCTACGAGACTTTAAACCCAGA-ATAATACCAGCACTA-AGCCTGCGG
*
72508582 GTCTTTAAGCCCAGAT
64 G-ATTTAAGCCCAGAT
72508598 A
1 A
72508599 CACATCAAAT
Statistics
Matches: 65, Mismatches: 10, Indels: 7
0.79 0.12 0.09
Matches are distributed among these distances:
75 8 0.12
76 22 0.34
77 28 0.43
78 7 0.11
ACGTcount: A:0.33, C:0.26, G:0.20, T:0.21
Consensus pattern (78 bp):
ATAAAACCAGCACGAAGCCTACGAGACTTTAAACCCAGAATAATACCAGCACTAAGCCTGCGGGA
TTTAAGCCCAGAT
Found at i:72512538 original size:48 final size:48
Alignment explanation
Indices: 72512480--72512702 Score: 207
Period size: 48 Copynumber: 4.6 Consensus size: 48
72512470 GGTGAATTGT
* *
72512480 CGATGCCATGTTCCAAACATGGTCTTACACTAGCT-TACATGTCGAGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCT-CATGTCGAGGC
* * * * ** * * *
72512528 CAATGCCATGTCCCAGACATGGTGTTACATTAGCTCTCGTCACAATGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATGTCGAGGC
* * * *
72512576 CGATGCCATATCCCAGACATGGTCTTACACTGGCTCTCATGTTGTGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATGTCGAGGC
* ** * * *
72512624 CGATGCCATGTCCCAGACATGGTTTTACACTAGAACAT-ATATCAATGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTC-TCATGTCGAGGC
* *
72512672 TGATTCCATGTCCCAGACATGGTCTTACACT
1 CGATGCCATGTCCCAGACATGGTCTTACACT
72512703 GGCACACATA
Statistics
Matches: 136, Mismatches: 37, Indels: 4
0.77 0.21 0.02
Matches are distributed among these distances:
48 134 0.99
49 2 0.01
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.29
Consensus pattern (48 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATGTCGAGGC
Found at i:72512641 original size:96 final size:96
Alignment explanation
Indices: 72512477--72512705 Score: 277
Period size: 96 Copynumber: 2.4 Consensus size: 96
72512467 GAGGGTGAAT
* * *
72512477 TGTCGATGCCATGTTCCAAACATGGTCTTACACTAGCTTACATGTCGAGGCCAATGCCATGTCCC
1 TGTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTACATGTCGAGGCCAATGCCATGTCCC
* ** *
72512542 AGACATGGTGTTACATTAGCTC-TCGTCA-CAA
66 AGACATGGTGTTACACTAGAACAT-AT-ATCAA
* * * *
72512573 TGTCGATGCCATATCCCAGACATGGTCTTACACTGGCTCT-CATGTTGTGGCCGATGCCATGTCC
1 TGTCGATGCCATGTCCCAGACATGGTCTTACACTGGCT-TACATGTCGAGGCCAATGCCATGTCC
*
72512637 CAGACATGGTTTTACACTAGAACATATATCAA
65 CAGACATGGTGTTACACTAGAACATATATCAA
*
72512669 TG-CTGATTCCATGTCCCAGACATGGTCTTACACTGGC
1 TGTC-GATGCCATGTCCCAGACATGGTCTTACACTGGC
72512706 ACACATATCA
Statistics
Matches: 115, Mismatches: 14, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
95 2 0.02
96 111 0.97
97 2 0.02
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.29
Consensus pattern (96 bp):
TGTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTACATGTCGAGGCCAATGCCATGTCCC
AGACATGGTGTTACACTAGAACATATATCAA
Found at i:72517693 original size:15 final size:15
Alignment explanation
Indices: 72517673--72517701 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
72517663 CAAAAATTCC
72517673 AATACAAAACATATT
1 AATACAAAACATATT
72517688 AATACAAAACATAT
1 AATACAAAACATAT
72517702 CCCTCATAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.62, C:0.14, G:0.00, T:0.24
Consensus pattern (15 bp):
AATACAAAACATATT
Found at i:72520334 original size:49 final size:49
Alignment explanation
Indices: 72520275--72520406 Score: 144
Period size: 49 Copynumber: 2.7 Consensus size: 49
72520265 CACATCAAAT
** * *
72520275 TCGATGCCATGTTTCAGACAGGTCTTACATTGACTTTCATATATAGAG-G
1 TCGATGCCATGTCCCAGAAAGGTCTTACATTGACTCTCATATATAG-GTG
* *
72520324 TCGATGCCATGTCCCA-AATAGGTCTTACATTTG-CTCTCATCTATCGGTG
1 TCGATGCCATGTCCCAGAA-AGGTCTTACA-TTGACTCTCATATATAGGTG
* *
72520373 TCGATGTCATGTCCCAGAAAGGTCTTACACTGAC
1 TCGATGCCATGTCCCAGAAAGGTCTTACATTGAC
72520407 ACACAACAAG
Statistics
Matches: 70, Mismatches: 8, Indels: 10
0.80 0.09 0.11
Matches are distributed among these distances:
48 4 0.06
49 61 0.87
50 5 0.07
ACGTcount: A:0.24, C:0.23, G:0.20, T:0.33
Consensus pattern (49 bp):
TCGATGCCATGTCCCAGAAAGGTCTTACATTGACTCTCATATATAGGTG
Found at i:72520483 original size:48 final size:48
Alignment explanation
Indices: 72520424--72520592 Score: 216
Period size: 48 Copynumber: 3.6 Consensus size: 48
72520414 AAGCTGACGC
*
72520424 CATGTCCCAGACAGGTCTTACACTAGCTTGTATATCTCGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCGAGGCCGATG
* ** * * *
72520472 CATGTCCCAGACATGTCTTACACTAGC-TCT-CGTCTCAATGTCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCGAGGCCGATG
* * *
72520518 CATATCTCAGACATGTCTTACACTGGCTTGTATATCTCGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCGAGGCCGATG
* *
72520566 CATGTTCCAGACATGTCTTAGACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
72520593 ATACATATCA
Statistics
Matches: 98, Mismatches: 21, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
46 35 0.36
47 4 0.04
48 59 0.60
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.30
Consensus pattern (48 bp):
CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCGAGGCCGATG
Found at i:72525639 original size:23 final size:23
Alignment explanation
Indices: 72525613--72525768 Score: 172
Period size: 23 Copynumber: 6.8 Consensus size: 23
72525603 GGTTACATCT
*
72525613 CAGTGGTAGCTTCGACTACAATA
1 CAGTGGTAGCTTCGGCTACAATA
* *
72525636 CAGTGGTAGCTTTGGCTAC-ATCT
1 CAGTGGTAGCTTCGGCTACAAT-A
*
72525659 CAGTGGTAGCTTCAGCTACAATA
1 CAGTGGTAGCTTCGGCTACAATA
* *
72525682 CAGTGGTCGCTTCGGCTAC-ATCT
1 CAGTGGTAGCTTCGGCTACAAT-A
72525705 CAGTGGTAGCTTCGGCTACAATA
1 CAGTGGTAGCTTCGGCTACAATA
* ***
72525728 CAGTGGTAGCTTCAGCTATGTTA
1 CAGTGGTAGCTTCGGCTACAATA
* *
72525751 CAGTGATAGCTTCAGCTA
1 CAGTGGTAGCTTCGGCTA
72525769 TATTACAATG
Statistics
Matches: 113, Mismatches: 16, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
22 4 0.04
23 105 0.93
24 4 0.04
ACGTcount: A:0.24, C:0.22, G:0.24, T:0.29
Consensus pattern (23 bp):
CAGTGGTAGCTTCGGCTACAATA
Found at i:72525755 original size:46 final size:46
Alignment explanation
Indices: 72525606--72525768 Score: 231
Period size: 46 Copynumber: 3.5 Consensus size: 46
72525596 ATCTATAGGT
*
72525606 TACATCTCAGTGGTAGCTTC-GACTACAATACAGTGGTAGCTTTGGC
1 TACATCTCAGTGGTAGCTTCAG-CTACAATACAGTGGTAGCTTCGGC
*
72525652 TACATCTCAGTGGTAGCTTCAGCTACAATACAGTGGTCGCTTCGGC
1 TACATCTCAGTGGTAGCTTCAGCTACAATACAGTGGTAGCTTCGGC
* *
72525698 TACATCTCAGTGGTAGCTTCGGCTACAATACAGTGGTAGCTTCAGC
1 TACATCTCAGTGGTAGCTTCAGCTACAATACAGTGGTAGCTTCGGC
** *
72525744 TATGT-TACAGTGATAGCTTCAGCTA
1 TACATCT-CAGTGGTAGCTTCAGCTA
72525769 TATTACAATG
Statistics
Matches: 106, Mismatches: 9, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
45 1 0.01
46 104 0.98
47 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.23, T:0.30
Consensus pattern (46 bp):
TACATCTCAGTGGTAGCTTCAGCTACAATACAGTGGTAGCTTCGGC
Found at i:72537644 original size:17 final size:17
Alignment explanation
Indices: 72537613--72537646 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
72537603 AACCCGAGTG
72537613 GGGCCCACGAGCCCATT
1 GGGCCCACGAGCCCATT
72537630 GGGCCACACGA-CCCATT
1 GGGCC-CACGAGCCCATT
72537647 TCAGCCCAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.21, C:0.41, G:0.26, T:0.12
Consensus pattern (17 bp):
GGGCCCACGAGCCCATT
Found at i:72538992 original size:25 final size:25
Alignment explanation
Indices: 72538964--72539016 Score: 63
Period size: 25 Copynumber: 2.1 Consensus size: 25
72538954 ACAACCACCG
*
72538964 TTTT-CAAATTCCTTGATTTTCTCCC
1 TTTTACAAATT-CTTGATTTCCTCCC
* *
72538989 TTTTACCACTTCTTGATTTCCTCCC
1 TTTTACAAATTCTTGATTTCCTCCC
72539014 TTT
1 TTT
72539017 GACCACTTCC
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 20 0.83
26 4 0.17
ACGTcount: A:0.13, C:0.30, G:0.04, T:0.53
Consensus pattern (25 bp):
TTTTACAAATTCTTGATTTCCTCCC
Found at i:72539021 original size:25 final size:25
Alignment explanation
Indices: 72538975--72539025 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
72538965 TTTCAAATTC
* *
72538975 CTTGATTTTCTCCCTTTTACCACTT
1 CTTGATTTCCTCCCTTTGACCACTT
72539000 CTTGATTTCCTCCCTTTGACCACTT
1 CTTGATTTCCTCCCTTTGACCACTT
72539025 C
1 C
72539026 CACAACCACC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.12, C:0.35, G:0.06, T:0.47
Consensus pattern (25 bp):
CTTGATTTCCTCCCTTTGACCACTT
Found at i:72539507 original size:56 final size:56
Alignment explanation
Indices: 72539441--72539582 Score: 239
Period size: 56 Copynumber: 2.5 Consensus size: 56
72539431 AGTTACATAC
* *
72539441 TAAACGTGGTCTTACTCGCACATATATATCAGAATCACATATTGATGCCAACGTAT
1 TAAACGTGGTCTTACTCGCACACATATATCAGAATCACATATCGATGCCAACGTAT
* **
72539497 TAAACGTGGTCTTACTCGCACACACATATTGGAATCACATATCGATGCCAACGTAT
1 TAAACGTGGTCTTACTCGCACACATATATCAGAATCACATATCGATGCCAACGTAT
72539553 TAAACGTGGTCTTACTCGCACACATATATC
1 TAAACGTGGTCTTACTCGCACACATATATC
72539583 GATGACATGG
Statistics
Matches: 79, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
56 79 1.00
ACGTcount: A:0.32, C:0.24, G:0.15, T:0.29
Consensus pattern (56 bp):
TAAACGTGGTCTTACTCGCACACATATATCAGAATCACATATCGATGCCAACGTAT
Found at i:72543763 original size:28 final size:28
Alignment explanation
Indices: 72543722--72543781 Score: 84
Period size: 28 Copynumber: 2.1 Consensus size: 28
72543712 ATGTTGTTGA
* *
72543722 ATACTCAATGTCTCGTACACTAAGTGCC
1 ATACTCAATATCTCGCACACTAAGTGCC
* *
72543750 ATACTCGATATCTCGCACATTAAGTGCC
1 ATACTCAATATCTCGCACACTAAGTGCC
72543778 ATAC
1 ATAC
72543782 ATAGCCGAAG
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.30, C:0.28, G:0.13, T:0.28
Consensus pattern (28 bp):
ATACTCAATATCTCGCACACTAAGTGCC
Found at i:72543875 original size:40 final size:40
Alignment explanation
Indices: 72543765--72543979 Score: 252
Period size: 40 Copynumber: 5.3 Consensus size: 40
72543755 CGATATCTCG
* * * * *
72543765 CACATTAAGTGCCATACATAGCCGAAGCTATCTCAAATCG
1 CACACTAAGTGCCATATATAGCCGAAGCTATGTCGAATCA
* * *
72543805 CACACTAAGTTCCACTATATAGTCGAAGCTATGTCGAATCG
1 CACACTAAGTGCCA-TATATAGCCGAAGCTATGTCGAATCA
* * *
72543846 TACACTAAGTACCATATATAGCCGAAGCTATGTTGAATCA
1 CACACTAAGTGCCATATATAGCCGAAGCTATGTCGAATCA
* * *
72543886 CACACTAAGTTCCATATATAGCCGAAGCTATGTCGTACCA
1 CACACTAAGTGCCATATATAGCCGAAGCTATGTCGAATCA
* *
72543926 CACACTAAGTGCCATATATAGCAGAAGCTATGTC-ATATCG
1 CACACTAAGTGCCATATATAGCCGAAGCTATGTCGA-ATCA
*
72543966 CCCACTAAGTGCCA
1 CACACTAAGTGCCA
72543980 CAAATAACCG
Statistics
Matches: 151, Mismatches: 22, Indels: 4
0.85 0.12 0.02
Matches are distributed among these distances:
40 117 0.77
41 34 0.23
ACGTcount: A:0.34, C:0.26, G:0.16, T:0.25
Consensus pattern (40 bp):
CACACTAAGTGCCATATATAGCCGAAGCTATGTCGAATCA
Found at i:72551853 original size:28 final size:28
Alignment explanation
Indices: 72551790--72551940 Score: 232
Period size: 28 Copynumber: 5.4 Consensus size: 28
72551780 ATATTAAGTC
* *
72551790 CGCACACTCAGTGCTATAAAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
72551817 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
72551845 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
72551873 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
72551901 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
72551930 CGCACACTTAG
1 CGCACACTTAG
72551941 CGCCAATCTC
Statistics
Matches: 116, Mismatches: 6, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
27 21 0.18
28 79 0.68
29 16 0.14
ACGTcount: A:0.34, C:0.27, G:0.12, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:72559864 original size:28 final size:28
Alignment explanation
Indices: 72559810--72559959 Score: 232
Period size: 28 Copynumber: 5.4 Consensus size: 28
72559800 ATATTAAGTC
*
72559810 CGCACACTCAGTGCTATA-AATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
72559836 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
72559864 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
72559892 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
72559920 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
72559949 CGCACACTTAG
1 CGCACACTTAG
72559960 CGCCAATCTC
Statistics
Matches: 116, Mismatches: 5, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
26 17 0.15
27 4 0.03
28 79 0.68
29 16 0.14
ACGTcount: A:0.34, C:0.27, G:0.12, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:72562771 original size:21 final size:21
Alignment explanation
Indices: 72562717--72562772 Score: 94
Period size: 21 Copynumber: 2.7 Consensus size: 21
72562707 AACAGGGGTC
*
72562717 ACACGCCCGTGTAGATAGAGG
1 ACACGCCCGTGTGGATAGAGG
*
72562738 ACACGCCCATGTGGATAGAGG
1 ACACGCCCGTGTGGATAGAGG
72562759 ACACGCCCGTGTGG
1 ACACGCCCGTGTGG
72562773 TCACACACGC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.25, C:0.27, G:0.34, T:0.14
Consensus pattern (21 bp):
ACACGCCCGTGTGGATAGAGG
Found at i:72564592 original size:19 final size:19
Alignment explanation
Indices: 72564568--72564606 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
72564558 AATAAATTAC
72564568 TCATCTTAGTTAATTAAGT
1 TCATCTTAGTTAATTAAGT
*
72564587 TCATCTTAGTTAATTTAGT
1 TCATCTTAGTTAATTAAGT
72564606 T
1 T
72564607 GCTGGAATAG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.28, C:0.10, G:0.10, T:0.51
Consensus pattern (19 bp):
TCATCTTAGTTAATTAAGT
Found at i:72564684 original size:10 final size:9
Alignment explanation
Indices: 72564669--72564713 Score: 56
Period size: 10 Copynumber: 4.9 Consensus size: 9
72564659 TAAGTCTAAT
72564669 ATGTGTTTAA
1 ATGTGTTT-A
72564679 ATGTGTTT-
1 ATGTGTTTA
72564687 ATGTGTTTA
1 ATGTGTTTA
*
72564696 ATGAGTTTTA
1 ATGTG-TTTA
72564706 ATGTGTTT
1 ATGTGTTT
72564714 GTTTGTAGGT
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
8 8 0.26
9 7 0.23
10 16 0.52
ACGTcount: A:0.22, C:0.00, G:0.22, T:0.56
Consensus pattern (9 bp):
ATGTGTTTA
Found at i:72564705 original size:18 final size:18
Alignment explanation
Indices: 72564668--72564713 Score: 58
Period size: 18 Copynumber: 2.5 Consensus size: 18
72564658 TTAAGTCTAA
*
72564668 TATGTGTTTAAATGTGTT
1 TATGTGTTTAAATGAGTT
72564686 TATGTGTTT-AATGAGTTT
1 TATGTGTTTAAATGAG-TT
72564704 TAATGTGTTT
1 T-ATGTGTTT
72564714 GTTTGTAGGT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
17 5 0.20
18 12 0.48
19 8 0.32
ACGTcount: A:0.22, C:0.00, G:0.22, T:0.57
Consensus pattern (18 bp):
TATGTGTTTAAATGAGTT
Found at i:72569925 original size:19 final size:19
Alignment explanation
Indices: 72569901--72569993 Score: 95
Period size: 19 Copynumber: 5.1 Consensus size: 19
72569891 AATAAATTAC
*
72569901 TCATCTTAGTTAATTGAGT
1 TCATCTTAGTTAATTAAGT
72569920 TCATCTTAGTTAATTAAGT
1 TCATCTTAGTTAATTAAGT
* * * *
72569939 T-GT-TGTAATAAATT-A-C
1 TCATCT-TAGTTAATTAAGT
72569955 TCATCTTAGTTAATTAAGT
1 TCATCTTAGTTAATTAAGT
*
72569974 TCATCTTAGTTAATTTAGT
1 TCATCTTAGTTAATTAAGT
72569993 T
1 T
72569994 GCTGGAATAA
Statistics
Matches: 59, Mismatches: 10, Indels: 10
0.75 0.13 0.13
Matches are distributed among these distances:
16 1 0.02
17 10 0.17
18 10 0.17
19 38 0.64
ACGTcount: A:0.30, C:0.10, G:0.12, T:0.48
Consensus pattern (19 bp):
TCATCTTAGTTAATTAAGT
Found at i:72569938 original size:54 final size:54
Alignment explanation
Indices: 72569875--72570003 Score: 222
Period size: 54 Copynumber: 2.4 Consensus size: 54
72569865 TTTAGTTTTA
*
72569875 TTAATTAAGTTGCTGGAATAAATTACTCATCTTAGTTAATTGAGTTCATCTTAG
1 TTAATTAAGTTGCTGGAATAAATTACTCATCTTAGTTAATTAAGTTCATCTTAG
* *
72569929 TTAATTAAGTTGTTGTAATAAATTACTCATCTTAGTTAATTAAGTTCATCTTAG
1 TTAATTAAGTTGCTGGAATAAATTACTCATCTTAGTTAATTAAGTTCATCTTAG
*
72569983 TTAATTTAGTTGCTGGAATAA
1 TTAATTAAGTTGCTGGAATAA
72570004 TTTATTGTTG
Statistics
Matches: 69, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
54 69 1.00
ACGTcount: A:0.33, C:0.09, G:0.14, T:0.44
Consensus pattern (54 bp):
TTAATTAAGTTGCTGGAATAAATTACTCATCTTAGTTAATTAAGTTCATCTTAG
Found at i:72570089 original size:9 final size:9
Alignment explanation
Indices: 72570056--72570110 Score: 67
Period size: 10 Copynumber: 5.9 Consensus size: 9
72570046 TAAGTCTAAT
72570056 ATGTGTTTA
1 ATGTGTTTA
72570065 TATGTGTTTAA
1 -ATGTGTTT-A
72570076 ATGTGTTTA
1 ATGTGTTTA
72570085 ATGTGTTTA
1 ATGTGTTTA
*
72570094 ATGAGTTTTA
1 ATGTG-TTTA
72570104 AT-TGTTT
1 ATGTGTTT
72570111 GTAGGTGACA
Statistics
Matches: 41, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
8 3 0.07
9 15 0.37
10 22 0.54
11 1 0.02
ACGTcount: A:0.24, C:0.00, G:0.20, T:0.56
Consensus pattern (9 bp):
ATGTGTTTA
Found at i:72570090 original size:19 final size:20
Alignment explanation
Indices: 72570056--72570094 Score: 71
Period size: 19 Copynumber: 2.0 Consensus size: 20
72570046 TAAGTCTAAT
72570056 ATGTGTTTATATGTGTTTAA
1 ATGTGTTTATATGTGTTTAA
72570076 ATGTGTTTA-ATGTGTTTAA
1 ATGTGTTTATATGTGTTTAA
72570095 TGAGTTTTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 10 0.53
20 9 0.47
ACGTcount: A:0.26, C:0.00, G:0.21, T:0.54
Consensus pattern (20 bp):
ATGTGTTTATATGTGTTTAA
Found at i:72570103 original size:19 final size:19
Alignment explanation
Indices: 72570060--72570110 Score: 61
Period size: 19 Copynumber: 2.7 Consensus size: 19
72570050 TCTAATATGT
*
72570060 GTTTATATGTGTTTAAATGT
1 GTTTA-ATGTGTTTAAATGA
72570080 GTTTAATGTGTTT-AATGA
1 GTTTAATGTGTTTAAATGA
72570098 GTTTTAAT-TGTTT
1 G-TTTAATGTGTTT
72570111 GTAGGTGACA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
18 10 0.34
19 14 0.48
20 5 0.17
ACGTcount: A:0.24, C:0.00, G:0.20, T:0.57
Consensus pattern (19 bp):
GTTTAATGTGTTTAAATGA
Found at i:72578634 original size:18 final size:20
Alignment explanation
Indices: 72578591--72578635 Score: 53
Period size: 18 Copynumber: 2.4 Consensus size: 20
72578581 CGAATGCACC
72578591 TTCTTTTCTTCTCCTTCCCT
1 TTCTTTTCTTCTCCTTCCCT
72578611 TT-TTTTC-TCT-C-TCCCT
1 TTCTTTTCTTCTCCTTCCCT
72578627 ATTCTTTTC
1 -TTCTTTTC
72578636 CCTTTTCATT
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
16 5 0.22
17 3 0.13
18 8 0.35
19 5 0.22
20 2 0.09
ACGTcount: A:0.02, C:0.36, G:0.00, T:0.62
Consensus pattern (20 bp):
TTCTTTTCTTCTCCTTCCCT
Found at i:72580063 original size:34 final size:34
Alignment explanation
Indices: 72579991--72580056 Score: 96
Period size: 34 Copynumber: 1.9 Consensus size: 34
72579981 TGTATTTTGT
* * *
72579991 ACTGTTACTAATACTATAATGGGCTAGGGCCCAC
1 ACTGATACTAATACTATAATGGGCCAAGGCCCAC
*
72580025 ACTGATACTAATACTGTAATGGGCCAAGGCCC
1 ACTGATACTAATACTATAATGGGCCAAGGCCC
72580057 TAACTGAAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
34 28 1.00
ACGTcount: A:0.30, C:0.24, G:0.21, T:0.24
Consensus pattern (34 bp):
ACTGATACTAATACTATAATGGGCCAAGGCCCAC
Found at i:72584063 original size:40 final size:40
Alignment explanation
Indices: 72584011--72584169 Score: 228
Period size: 40 Copynumber: 4.0 Consensus size: 40
72584001 GATTTAGCCG
* *
72584011 GATATAACAACTCGCACAAATGCCTTCGGGTCCTAGCCCG
1 GATATAGCAACTCGCACAAATGCCTTCGGGTCCTAGCCCA
* * *
72584051 GATACAGTAACTCACACAAATGCCTTCGGGTCCTAGCCCA
1 GATATAGCAACTCGCACAAATGCCTTCGGGTCCTAGCCCA
* * **
72584091 GATATAGCATCTCGCACAAATGCCTTCGGGTCTTAGCTTA
1 GATATAGCAACTCGCACAAATGCCTTCGGGTCCTAGCCCA
*
72584131 GATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCCC
1 GATATAGCAACTCGCACAAATGCCTTCGGGTCCTAGCCC
72584170 GGTTATCATC
Statistics
Matches: 104, Mismatches: 15, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 104 1.00
ACGTcount: A:0.27, C:0.30, G:0.19, T:0.23
Consensus pattern (40 bp):
GATATAGCAACTCGCACAAATGCCTTCGGGTCCTAGCCCA
Found at i:72588854 original size:27 final size:27
Alignment explanation
Indices: 72588823--72589000 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
72588813 TAAATTGTAC
72588823 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
72588850 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
72588876 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
72588904 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
72588932 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
72588959 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
72588986 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
72589001 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:72588937 original size:82 final size:81
Alignment explanation
Indices: 72588824--72588979 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
72588814 AAATTGTACA
* *
72588824 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
72588888 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
72588905 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
72588970 TGCGAGTTGA
65 TGCGAATTGA
72588980 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:72588991 original size:82 final size:81
Alignment explanation
Indices: 72588820--72589000 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
72588810 GATTAAATTG
* *
72588820 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
72588885 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
72588901 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
72588965 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
72588983 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
72589001 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:72595504 original size:40 final size:40
Alignment explanation
Indices: 72595437--72595613 Score: 286
Period size: 40 Copynumber: 4.5 Consensus size: 40
72595427 ACCCAAGCAT
*
72595437 CTTCGGGAT-TTAG-CCGGATATAACAACTCGCACAAATGC
1 CTTCGGG-TCTTAGCCCGGATATAGCAACTCGCACAAATGC
* * *
72595476 CTTCGGGTCCTAGCCCGGATACAGCAACTTGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
*
72595516 CTTCGGGTCTTAGCCCGGATATAGCATCTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
72595556 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
72595596 CTTCGGGTCTTAGCCCGG
1 CTTCGGGTCTTAGCCCGG
72595614 TTATCATCCG
Statistics
Matches: 127, Mismatches: 9, Indels: 3
0.91 0.06 0.02
Matches are distributed among these distances:
38 1 0.01
39 10 0.08
40 116 0.91
ACGTcount: A:0.24, C:0.30, G:0.23, T:0.23
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
Found at i:72599492 original size:27 final size:26
Alignment explanation
Indices: 72599448--72599499 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
72599438 CTTGCTGCAA
*
72599448 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
72599475 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
72599500 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:72606556 original size:27 final size:26
Alignment explanation
Indices: 72606512--72606563 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
72606502 CTCGCTGCAA
*
72606512 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
72606539 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
72606564 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:72606631 original size:26 final size:27
Alignment explanation
Indices: 72606602--72606661 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 27
72606592 CCACATATAT
*
72606602 ATATCTGT-TCTGGTGGCCTAGCCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
* * *
72606628 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
72606655 ATATCTG
1 ATATCTG
72606662 CCAGCCTCGT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (27 bp):
ATATCTGTATCTGGTGACCTAGCCACA
Found at i:72613770 original size:26 final size:24
Alignment explanation
Indices: 72613739--72613796 Score: 73
Period size: 24 Copynumber: 2.3 Consensus size: 24
72613729 GTCATGGGCG
72613739 GTAAGCTCTTACTGAGCT-GATAAATA
1 GTAAGCTC-TACTGAG-TAGA-AAATA
*
72613765 GTAAGCTCTATTGAGTAGAAAATA
1 GTAAGCTCTACTGAGTAGAAAATA
72613789 GTAAGCTC
1 GTAAGCTC
72613797 CATTGAACTG
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
24 14 0.47
25 8 0.27
26 8 0.27
ACGTcount: A:0.36, C:0.14, G:0.21, T:0.29
Consensus pattern (24 bp):
GTAAGCTCTACTGAGTAGAAAATA
Found at i:72616963 original size:29 final size:29
Alignment explanation
Indices: 72616900--72617007 Score: 132
Period size: 29 Copynumber: 3.8 Consensus size: 29
72616890 TTCACATACC
* * * *
72616900 TATATCTGGCCCACTAAGCCC-AATCATA
1 TATATATGGCCCATTAGGCCCAAATCACA
72616928 T-TCATATGGCCCATTAGGCCCAAATCACCA
1 TAT-ATATGGCCCATTAGGCCCAAATCA-CA
72616958 -ATATATGGCCCATTAGGCCCAAATCACA
1 TATATATGGCCCATTAGGCCCAAATCACA
*
72616986 TTTATATGGCCCATTAGGCCCA
1 TATATATGGCCCATTAGGCCCA
72617008 GCCACATTCA
Statistics
Matches: 70, Mismatches: 5, Indels: 9
0.83 0.06 0.11
Matches are distributed among these distances:
27 1 0.01
28 18 0.26
29 49 0.70
30 2 0.03
ACGTcount: A:0.31, C:0.31, G:0.14, T:0.25
Consensus pattern (29 bp):
TATATATGGCCCATTAGGCCCAAATCACA
Found at i:72619738 original size:771 final size:771
Alignment explanation
Indices: 72618257--72619798 Score: 3057
Period size: 771 Copynumber: 2.0 Consensus size: 771
72618247 TTTCATTTAT
72618257 TCCTAGGTTCGAACTCAAACTTAACTAAGACCTACTAAAATTGTCGCTTGGATAAGAATATTAAA
1 TCCTAGGTTCGAACTCAAACTTAACTAAGACCTACTAAAATTGTCGCTTGGATAAGAATATTAAA
*
72618322 CATAATTTTTATCAAAATCGAAAATTAAGAAAATTTGGGATTTCAAGATTTTTGGGTTTGGGGAT
66 CATAATTTTTATCAAAATCGAAAATTAAGAAAATTCGGGATTTCAAGATTTTTGGGTTTGGGGAT
72618387 TTTTGGGGCGTTACAGCAAGTTAACATTTAATTTTAAAAAAAAAGTTCAAAAAACTCGTCTTCAT
131 TTTTGGGGCGTTACAGCAAGTTAACATTTAATTTTAAAAAAAAAGTTCAAAAAACTCGTCTTCAT
72618452 TCCATTTTTGTCTCTCTTCCAATGTTGAAGGGAATGGTACCTATATGGTAGCAGGTTGTTTGTCA
196 TCCATTTTTGTCTCTCTTCCAATGTTGAAGGGAATGGTACCTATATGGTAGCAGGTTGTTTGTCA
72618517 GCCTCCTGGGGCTCCTATTGAAGATTTTCTACATTCTCTCTTATCTACTCTTGTGTCAGAGTTTC
261 GCCTCCTGGGGCTCCTATTGAAGATTTTCTACATTCTCTCTTATCTACTCTTGTGTCAGAGTTTC
*
72618582 TGGGCTACTCAAGATTTTTCCTGAACGAAGTGTGATTGCTTTCACATGCTCCTTCCCTTCCTTTC
326 TGGGCTACTCAAGATTTTTCCTGAACGAAGTGTGATTACTTTCACATGCTCCTTCCCTTCCTTTC
72618647 AAGGATTATTTTCAGTATTGCTAGGAATGTCGGTGCCAATTTGTCTTCTGATATATCCCACTATA
391 AAGGATTATTTTCAGTATTGCTAGGAATGTCGGTGCCAATTTGTCTTCTGATATATCCCACTATA
72618712 CTCATCAATTGGCTCATTTCATCTTCCAGCTTAGTTAATTTTTTACTCGAATTAGTGCACTCAGA
456 CTCATCAATTGGCTCATTTCATCTTCCAGCTTAGTTAATTTTTTACTCGAATTAGTGCACTCAGA
72618777 TTGCATTTGCTTCACATTTGTCCTCATTAACTGTGTTTCCCCATCTATCCGATCCAAGCAATGAC
521 TTGCATTTGCTTCACATTTGTCCTCATTAACTGTGTTTCCCCATCTATCCGATCCAAGCAATGAC
72618842 CACATATAGTATGGTCATTTAGGTTGGCTCTTTCTTGAGGTTTCTGTAAATAAAGAGGTTGATAA
586 CACATATAGTATGGTCATTTAGGTTGGCTCTTTCTTGAGGTTTCTGTAAATAAAGAGGTTGATAA
72618907 TTAGTGTTTTTGACTTAATTCGAAGTATTGCCTCCTTCTTGATTTTCTCACATCTCAGGTTTGGG
651 TTAGTGTTTTTGACTTAATTCGAAGTATTGCCTCCTTCTTGATTTTCTCACATCTCAGGTTTGGG
72618972 TGATCTTTCCATCCAGGATTGTACATATTTGAATATGTGTTTCCACCCCTATTTTG
716 TGATCTTTCCATCCAGGATTGTACATATTTGAATATGTGTTTCCACCCCTATTTTG
72619028 TCCTAGGTTCGAACTCAAACTTAACTAAGACCTACTAAAATTGTCGCTTGGATAAGAATATTAAA
1 TCCTAGGTTCGAACTCAAACTTAACTAAGACCTACTAAAATTGTCGCTTGGATAAGAATATTAAA
*
72619093 CATAATTTTTATCAACATCGAAAATTAAGAAAATTCGGGATTTCAAGATTTTTGGGTTTGGGGAT
66 CATAATTTTTATCAAAATCGAAAATTAAGAAAATTCGGGATTTCAAGATTTTTGGGTTTGGGGAT
72619158 TTTTGGGGCGTTACAGCAAGTTAACATTTAATTTTAAAAAAAAAGTTCAAAAAACTCGTCTTCAT
131 TTTTGGGGCGTTACAGCAAGTTAACATTTAATTTTAAAAAAAAAGTTCAAAAAACTCGTCTTCAT
72619223 TCCATTTTTGTCTCTCTTCCAATGTTGAAGGGAATGGTACCTATATGGTAGCAGGTTGTTTGTCA
196 TCCATTTTTGTCTCTCTTCCAATGTTGAAGGGAATGGTACCTATATGGTAGCAGGTTGTTTGTCA
72619288 GCCTCCTGGGGCTCCTATTGAAGATTTTCTACATTCTCTCTTATCTACTCTTGTGTCAGAGTTTC
261 GCCTCCTGGGGCTCCTATTGAAGATTTTCTACATTCTCTCTTATCTACTCTTGTGTCAGAGTTTC
72619353 TGGGCTACTCAAGATTTTTCCTGAACGAAGTGTGATTACTTTCACATGCTCCTTCCCTTCCTTTC
326 TGGGCTACTCAAGATTTTTCCTGAACGAAGTGTGATTACTTTCACATGCTCCTTCCCTTCCTTTC
72619418 AAGGATTATTTTCAGTATTGCTAGGAATGTCGGTGCCAATTTGTCTTCTGATATATCCCACTATA
391 AAGGATTATTTTCAGTATTGCTAGGAATGTCGGTGCCAATTTGTCTTCTGATATATCCCACTATA
72619483 CTCATCAATTGGCTCATTTCATCTTCCAGCTTAGTTAATTTTTTACTCGAATTAGTGCACTCAGA
456 CTCATCAATTGGCTCATTTCATCTTCCAGCTTAGTTAATTTTTTACTCGAATTAGTGCACTCAGA
72619548 TTGCATTTGCTTCACATTTGTCCTCATTAACTGTGTTTCCCCATCTATCCGATCCAAGCAATGAC
521 TTGCATTTGCTTCACATTTGTCCTCATTAACTGTGTTTCCCCATCTATCCGATCCAAGCAATGAC
72619613 CACATATAGTATGGTCATTTAGGTTGGCTCTTTCTTGAGGTTTCTGTAAATAAAGAGGTTGATAA
586 CACATATAGTATGGTCATTTAGGTTGGCTCTTTCTTGAGGTTTCTGTAAATAAAGAGGTTGATAA
72619678 TTAGTGTTTTTGACTTAATTCGAAGTATTGCCTCCTTCTTGATTTTCTCACATCTCAGGTTTGGG
651 TTAGTGTTTTTGACTTAATTCGAAGTATTGCCTCCTTCTTGATTTTCTCACATCTCAGGTTTGGG
72619743 TGATCTTTCCATCCAGGATTGTACATATTTGAATATGTGTTTCCACCCCTATTTTG
716 TGATCTTTCCATCCAGGATTGTACATATTTGAATATGTGTTTCCACCCCTATTTTG
72619799 ATATAATTCA
Statistics
Matches: 768, Mismatches: 3, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
771 768 1.00
ACGTcount: A:0.25, C:0.19, G:0.17, T:0.39
Consensus pattern (771 bp):
TCCTAGGTTCGAACTCAAACTTAACTAAGACCTACTAAAATTGTCGCTTGGATAAGAATATTAAA
CATAATTTTTATCAAAATCGAAAATTAAGAAAATTCGGGATTTCAAGATTTTTGGGTTTGGGGAT
TTTTGGGGCGTTACAGCAAGTTAACATTTAATTTTAAAAAAAAAGTTCAAAAAACTCGTCTTCAT
TCCATTTTTGTCTCTCTTCCAATGTTGAAGGGAATGGTACCTATATGGTAGCAGGTTGTTTGTCA
GCCTCCTGGGGCTCCTATTGAAGATTTTCTACATTCTCTCTTATCTACTCTTGTGTCAGAGTTTC
TGGGCTACTCAAGATTTTTCCTGAACGAAGTGTGATTACTTTCACATGCTCCTTCCCTTCCTTTC
AAGGATTATTTTCAGTATTGCTAGGAATGTCGGTGCCAATTTGTCTTCTGATATATCCCACTATA
CTCATCAATTGGCTCATTTCATCTTCCAGCTTAGTTAATTTTTTACTCGAATTAGTGCACTCAGA
TTGCATTTGCTTCACATTTGTCCTCATTAACTGTGTTTCCCCATCTATCCGATCCAAGCAATGAC
CACATATAGTATGGTCATTTAGGTTGGCTCTTTCTTGAGGTTTCTGTAAATAAAGAGGTTGATAA
TTAGTGTTTTTGACTTAATTCGAAGTATTGCCTCCTTCTTGATTTTCTCACATCTCAGGTTTGGG
TGATCTTTCCATCCAGGATTGTACATATTTGAATATGTGTTTCCACCCCTATTTTG
Found at i:72621403 original size:66 final size:69
Alignment explanation
Indices: 72621273--72621403 Score: 160
Period size: 66 Copynumber: 1.9 Consensus size: 69
72621263 AGGATGTATC
* * *
72621273 CCATGTAGACAAGAGAGCTACGGGAGAGGATAAATGTAGCTAGGTCGCATGTGTGATTCCAAGTG
1 CCATGTAGACAAGAGAGCTAC--G-GAGGATAAATGTAGCTAGGTCACATGGGTGATACCAAGTG
72621338 AAAGACA
63 AAAGACA
* * *
72621345 CCATGTAGACAAGAGAGCTAC-GA-GATAAAT-TGGCTAGGTCACATGGGTGGTACTAAGTG
1 CCATGTAGACAAGAGAGCTACGGAGGATAAATGTAGCTAGGTCACATGGGTGATACCAAGTG
72621404 TTCACCATGT
Statistics
Matches: 53, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
66 23 0.43
67 7 0.13
68 2 0.04
72 21 0.40
ACGTcount: A:0.34, C:0.15, G:0.31, T:0.21
Consensus pattern (69 bp):
CCATGTAGACAAGAGAGCTACGGAGGATAAATGTAGCTAGGTCACATGGGTGATACCAAGTGAAA
GACA
Found at i:72622077 original size:14 final size:15
Alignment explanation
Indices: 72622052--72622080 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
72622042 TACTAATTGG
72622052 CTAGACAAAAAAATT
1 CTAGACAAAAAAATT
72622067 CTAGA-AAAAAAATT
1 CTAGACAAAAAAATT
72622081 AGTAAGAAGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.62, C:0.10, G:0.07, T:0.21
Consensus pattern (15 bp):
CTAGACAAAAAAATT
Found at i:72628897 original size:66 final size:69
Alignment explanation
Indices: 72628767--72628897 Score: 151
Period size: 66 Copynumber: 1.9 Consensus size: 69
72628757 GGGATGTATC
* * *
72628767 CCATGTAGACAAGAGAGCTATGGGAGAGGATAAATGTAGCTAGGTCGCATGTGTGATTCCAAGTG
1 CCATGTAGACAAGAGAGCTA---GAGAGGATAAATGTAGCTAGGTCACATGGGTGATACCAAGTG
72628832 AAAGACA
63 AAAGACA
* * * *
72628839 CCATGTAGACAAGAGAGCTA-CGA-GATAAAT-TGGCTAGGTCACATGGGTGGTACTAAGTG
1 CCATGTAGACAAGAGAGCTAGAGAGGATAAATGTAGCTAGGTCACATGGGTGATACCAAGTG
72628898 TTCACCATGT
Statistics
Matches: 52, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
66 23 0.44
67 7 0.13
68 2 0.04
72 20 0.38
ACGTcount: A:0.34, C:0.15, G:0.31, T:0.21
Consensus pattern (69 bp):
CCATGTAGACAAGAGAGCTAGAGAGGATAAATGTAGCTAGGTCACATGGGTGATACCAAGTGAAA
GACA
Found at i:72630892 original size:29 final size:28
Alignment explanation
Indices: 72630856--72630933 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
72630846 TCATGAGATT
72630856 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
*
72630886 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
72630913 TGGCACTAAGTGTGCGCGGTT
1 -GGCACTAAGTGTGCG-GGTT
72630934 GATTATTAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 5 0.12
29 35 0.81
30 3 0.07
ACGTcount: A:0.26, C:0.15, G:0.31, T:0.28
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:72631152 original size:175 final size:174
Alignment explanation
Indices: 72630886--72631214 Score: 613
Period size: 175 Copynumber: 1.9 Consensus size: 174
72630876 AAATTGTACA
72630886 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
* *
72630951 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
72631016 TTTTGGACAGCGGAAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGG-AAAAGGTAAGTGTGCGAACTTGAAATGCATG
* *
72631061 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
72631126 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
72631191 TTTTGGACAGCGGAAAAGGTAAGT
131 TTTTGGACAGCGGAAAAGGTAAGT
72631215 ACCTTGAGTT
Statistics
Matches: 150, Mismatches: 4, Indels: 1
0.97 0.03 0.01
Matches are distributed among these distances:
174 11 0.07
175 139 0.93
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:72636662 original size:72 final size:72
Alignment explanation
Indices: 72636545--72636683 Score: 226
Period size: 72 Copynumber: 1.9 Consensus size: 72
72636535 ATTCTCTAAT
*
72636545 TAATAGAGAAGGCAAATGAAAGTTAGAAAAAGGAATTATATTCTTTCCAAAAAAAAATATGATTA
1 TAATAGAGAAGGCAAATGAAAGTTAGAAAAAGGAATTATATTCTTTCCAAAAAAAAATAGGATTA
72636610 TTCCTTA
66 TTCCTTA
* * *
72636617 TAATAGAGAAGGCAAATGAAAAGTTAGAAAAATG-ATTATATTCTTTCCAAAAGAATATAGGATT
1 TAATAGAGAAGGCAAATG-AAAGTTAGAAAAAGGAATTATATTCTTTCCAAAAAAAAATAGGATT
72636681 ATT
65 ATT
72636684 TCCCCTATTA
Statistics
Matches: 62, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
72 48 0.77
73 14 0.23
ACGTcount: A:0.48, C:0.07, G:0.15, T:0.29
Consensus pattern (72 bp):
TAATAGAGAAGGCAAATGAAAGTTAGAAAAAGGAATTATATTCTTTCCAAAAAAAAATAGGATTA
TTCCTTA
Found at i:72644070 original size:77 final size:81
Alignment explanation
Indices: 72643950--72644132 Score: 234
Period size: 77 Copynumber: 2.3 Consensus size: 81
72643940 TTGAATGATG
*
72643950 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAG-TCCCGAAGGCAT
72644013 TTGTGCGAGATACTA-A
65 TTGTGCGAGATACTATA
* * * **
72644029 TCCGGG-TAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGTCCCGAAGGCATT
*
72644091 TGTGCGAGTTACTATA
66 TGTGCGAGATACTATA
* *
72644107 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
72644133 AACGAGTAGC
Statistics
Matches: 90, Mismatches: 9, Indels: 9
0.83 0.08 0.08
Matches are distributed among these distances:
76 1 0.01
77 49 0.54
78 17 0.19
79 9 0.10
80 14 0.16
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGTCCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:72644094 original size:40 final size:40
Alignment explanation
Indices: 72643950--72644132 Score: 225
Period size: 40 Copynumber: 4.7 Consensus size: 40
72643940 TTGAATGATG
* * * *
72643950 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
72643990 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACT-AA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
72644029 TCCGGG-TAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
72644067 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
72644108 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
72644133 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 10, Indels: 14
0.84 0.07 0.09
Matches are distributed among these distances:
37 23 0.18
38 12 0.10
39 10 0.08
40 71 0.56
41 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:72644150 original size:80 final size:76
Alignment explanation
Indices: 72644003--72644165 Score: 202
Period size: 80 Copynumber: 2.1 Consensus size: 76
72643993 GGACTAAGAT
* **
72644003 CCGAAGGCATTTGTGCGAGATACTAATCCGGGTAAGCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 CCGAAGGCATTTGTGCGAGATACTAAACCGGGTAAGCCCGAAGGCATTTGAACGAGTTACTAAAT
*
72644068 CCGGGTTAAGTC
66 CC-GGTTAAATC
* *
72644080 CCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCT
1 CCGAAGGCATTTGTGCGAGATACTA-AACCGGG-TAAG-CCCGAAGGCATTTGAACGAGTTA-CT
* *
72644144 ATATCCGGTTAAATT
62 AAATCCGGTTAAATC
72644159 CCGAAGG
1 CCGAAGG
72644166 TACGTGATTT
Statistics
Matches: 74, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
77 24 0.32
78 6 0.08
79 19 0.26
80 25 0.34
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (76 bp):
CCGAAGGCATTTGTGCGAGATACTAAACCGGGTAAGCCCGAAGGCATTTGAACGAGTTACTAAAT
CCGGTTAAATC
Found at i:72645912 original size:21 final size:21
Alignment explanation
Indices: 72645886--72645934 Score: 80
Period size: 21 Copynumber: 2.3 Consensus size: 21
72645876 ACCCTTGTAG
72645886 GTGTGCCACTTTCACACGGAC
1 GTGTGCCACTTTCACACGGAC
* *
72645907 GTGTGCCTCTTTCACACGGGC
1 GTGTGCCACTTTCACACGGAC
72645928 GTGTGCC
1 GTGTGCC
72645935 CCTATGTCAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.12, C:0.33, G:0.29, T:0.27
Consensus pattern (21 bp):
GTGTGCCACTTTCACACGGAC
Found at i:72653419 original size:42 final size:43
Alignment explanation
Indices: 72653329--72653421 Score: 120
Period size: 43 Copynumber: 2.2 Consensus size: 43
72653319 ATACCAGTCG
* *
72653329 TGGTCTTACATGTAATCAAATATCGATGCCACTGTCCAAGATA
1 TGGTCTTACATGAAATCAAATATCGATGCCACTGTCCAAGACA
*
72653372 GGGTCTTACATGAAATCAAATA-CGATGCCAAC-GTCCCAA-ACA
1 TGGTCTTACATGAAATCAAATATCGATGCC-ACTGT-CCAAGACA
72653414 TGGTCTTA
1 TGGTCTTA
72653422 TAAATAAATC
Statistics
Matches: 44, Mismatches: 4, Indels: 5
0.83 0.08 0.09
Matches are distributed among these distances:
42 18 0.41
43 26 0.59
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.27
Consensus pattern (43 bp):
TGGTCTTACATGAAATCAAATATCGATGCCACTGTCCAAGACA
Found at i:72655399 original size:936 final size:934
Alignment explanation
Indices: 72653589--72655448 Score: 3233
Period size: 936 Copynumber: 2.0 Consensus size: 934
72653579 ATTCTCAAGA
*
72653589 CATATATTCATTCAACATTGATCAAAATCATATAATCAATAATAATTCAATTCAAAATACATTTA
1 CATATATTCATTCAACATTGATCAAAAGCATATAATCAATAATAATTCAATTCAAAATACATTTA
* * * *
72653654 TTTGTATATTGACTTACCTCGTACGGACTCGAATAAACAGAATCGGCTATTCAACGACTTTCGAC
66 TTTGTATATCGACTTACCTCCTACGGACTCGAATAAACAGAATCAGCTACTCAACGACTTTCGAC
*
72653719 TTTCCCCGGTCTAATTCCGTTTTCTTTGGTTCTTGATCTATATAAATTCAAATTTAACTCTTTTA
131 TTTCCCCGATCTAATTCCGTTTTCTTTGGTTCTTGATCTATATAAATTCAAATTTAACTCTTTTA
*
72653784 TTAACCAAATCATTCAAATCAATCCAAAAACACATATTTAGGCCATTTGAAAAATTAGCCCTCAC
196 TTAACCAAATCATTCAAATCAATCCAAAAACAAATATTTAGGCCATTTGAAAAATTAGCCCTCAC
* * *
72653849 ATTTTCACATTTTTACAATTTAGTCCCTAATTCATAAAATCACAAAATACACCAAATTTCTTTAA
261 ATTTTCACATCTTGACAATTTAGTCCCAAATTCATAAAATCACAAAATACACCAAATTTCTTTAA
72653914 ACATATGCTTGGCTGAATATTCCTATAGCTCATACAAGCCCACATATTTCATTTATTTCACATTT
326 ACATATGCTTGGCTGAATATTCCTATAGCTCATACAAGCCCACATATTTCATTTATTTCACATTT
* *
72653979 TAGTCCCTCAAAAATTCATTTTCACAATTTAGTCCATTTTACTCAAATTCATCAAAAATTTAAAG
391 TAGTCCCTCAAAAACTCATTTTCACAATTTAGTCCATTTTACTCAAATTCATCAAAAATTCAAAG
*
72654044 ACAAAATATACTAACCCAAAACATATCTTTCATTTTCCATCAACTAACTTCACAAAGCTTACAAA
456 ACAAAATATACTAACCCAAAACATATATTTCATTTTCCAT--ACTAACTTCACAAAGCTTACAAA
* *
72654109 ATCAACAATGACATAACTCAAAATCATCATCAAAATCAGAAATTAGGGCATGGGCTTGATAGATT
519 ATCAACAATGACATAACTCAAAATCATCATCAAAATAAAAAATTAGGGCATGGGCTTGATAGATT
* *
72654174 ACTTAGCAACGATTACAAAAACGTAGAAATCATCAAAAACCAATCAAATTTCATACCTTAATCAC
584 ACTAAGCAACGAATACAAAAACGTAGAAATCATCAAAAACCAATCAAATTTCATACCTTAATCAC
72654239 CAAAATAAGTAGCCGAACCCTAGCTTGTATTTTCTTTTCTTTTCCTTTGTATTTCCTGTTATGGA
649 CAAAATAAGTAGCCGAACCCTAGCTTGTATTTTCTTTTCTTTTCCTTTGTATTTCCTGTTATGGA
* *
72654304 TGAACACAAATGGTCCATTTTCATGCCTTTGTTTTATTATGAATCATTTAATTCTTCAGTTACAA
714 TGAACACAAATGATCCATTTTCATGCCTTTGTTTTATTATAAATCATTTAATTCTTCAGTTACAA
* *
72654369 ATTTGCCTGTATAAATTAACATATAAAATCACATATATTAAGGCCATTAATGTCCATTAACCTTG
779 ATTTGCCTGTATAAAGTAACATATAAAATCACATATATTAAGGCCATTAATGTCCATTAAACTTG
72654434 TTAATGGTCCAATTGCAACATAAGGACCTTTCATTTACAAAGACATATCAAATAAGCACTTTAAC
844 TTAATGGTCCAATTGCAACATAAGGACCTTTCATTTACAAAGACATATCAAATAAGCACTTTAAC
72654499 CAATAGCAGGCAACATTGTTTAAAAG
909 CAATAGCAGGCAACATTGTTTAAAAG
* *
72654525 CATATATTCATTCAACATTGTTTAAAAGCATATAATCAATAATAATTCAATTCAAAATACATTTA
1 CATATATTCATTCAACATTGATCAAAAGCATATAATCAATAATAATTCAATTCAAAATACATTTA
* *
72654590 TTTTTATATCGACTTACCTCCTACGGACTCGAATAAACAGAATCAGCTACTCGACGACTTTCGAC
66 TTTGTATATCGACTTACCTCCTACGGACTCGAATAAACAGAATCAGCTACTCAACGACTTTCGAC
* *
72654655 TTTCCCCGATCTAATTTCGTTTTCTTTGGTTCTTGATCTATATAAATTTAAATTTAACTCTTTTA
131 TTTCCCCGATCTAATTCCGTTTTCTTTGGTTCTTGATCTATATAAATTCAAATTTAACTCTTTTA
* * **
72654720 TTCACCAAATCATTCAAATCAATCCAAAAACAAATATTTAGGCCATTTTACGAATTAGCCCTCAC
196 TTAACCAAATCATTCAAATCAATCCAAAAACAAATATTTAGGCCATTTGAAAAATTAGCCCTCAC
* *
72654785 ATTTTCACATCTTGACAATTTAGTCTCAAATTCATAAAATCACAGAATACACCAAATTTCTTTAA
261 ATTTTCACATCTTGACAATTTAGTCCCAAATTCATAAAATCACAAAATACACCAAATTTCTTTAA
72654850 ACATATGCTTGGCCT-AATATTCCTATAGCTCATACAAGCCCACATATTTCATTTATTTCACATT
326 ACATATGCTTGG-CTGAATATTCCTATAGCTCATACAAGCCCACATATTTCATTTATTTCACA-T
72654914 TTTAGTCCCTCAAAAACTCATTTTCACAATTTAGTCCATTTTACTCAAATTCATCAAAAATTCAA
389 TTTAGTCCCTCAAAAACTCATTTTCACAATTTAGTCCATTTTACTCAAATTCATCAAAAATTCAA
72654979 AGACAAAATATACTAACCCAAAACATATATTTCATTTTCCAT-C-AACTTCACAAAGCTTACAAA
454 AGACAAAATATACTAACCCAAAACATATATTTCATTTTCCATACTAACTTCACAAAGCTTACAAA
* *
72655042 ATCAACAATGGCATAACTCAAAATCATCATCAAAATAAAAAAATTAGGGCATGTGCTTGATAGAT
519 ATCAACAATGACATAACTCAAAATCATCATCAAAAT-AAAAAATTAGGGCATGGGCTTGATAGAT
* *
72655107 TACTAAGCAACGAATACAAAAAACGTAGAAATTATCAAAAACTAATCAAATTTCATACCTTAATC
583 TACTAAGCAACGAATAC-AAAAACGTAGAAATCATCAAAAACCAATCAAATTTCATACCTTAATC
* * *
72655172 ACCAAAATAAGTAGCCGAACCTTAGTTTGTATTTTCTTTTCTTTTCCTTTGTATTT-TTGGTTAT
647 ACCAAAATAAGTAGCCGAACCCTAGCTTGTATTTTCTTTTCTTTTCCTTTGTATTTCCT-GTTAT
*
72655236 GGATGAACACAAATGATCCATTTTCATGCCTTTGTTTTATTATAAATCATTTAATTCTTCATTTA
711 GGATGAACACAAATGATCCATTTTCATGCCTTTGTTTTATTATAAATCATTTAATTCTTCAGTTA
* *
72655301 CAAATTTGCCCTTTATAAAGTAACATATAAAATCACATATATTAAGGCCATTAATGTCTATTAAA
776 CAAATTTG-CCTGTATAAAGTAACATATAAAATCACATATATTAAGGCCATTAATGTCCATTAAA
72655366 CTTGTTAATGGTCCAATTGCAACATAAGGACCTTTCATTTACAAAGACATATCAAATAAGCACTT
840 CTTGTTAATGGTCCAATTGCAACATAAGGACCTTTCATTTACAAAGACATATCAAATAAGCACTT
72655431 TAACCAATAGCAGGCAAC
905 TAACCAATAGCAGGCAAC
72655449 TTTTATAGTT
Statistics
Matches: 875, Mismatches: 43, Indels: 12
0.94 0.05 0.01
Matches are distributed among these distances:
933 55 0.06
934 42 0.05
935 174 0.20
936 497 0.57
937 107 0.12
ACGTcount: A:0.37, C:0.20, G:0.08, T:0.34
Consensus pattern (934 bp):
CATATATTCATTCAACATTGATCAAAAGCATATAATCAATAATAATTCAATTCAAAATACATTTA
TTTGTATATCGACTTACCTCCTACGGACTCGAATAAACAGAATCAGCTACTCAACGACTTTCGAC
TTTCCCCGATCTAATTCCGTTTTCTTTGGTTCTTGATCTATATAAATTCAAATTTAACTCTTTTA
TTAACCAAATCATTCAAATCAATCCAAAAACAAATATTTAGGCCATTTGAAAAATTAGCCCTCAC
ATTTTCACATCTTGACAATTTAGTCCCAAATTCATAAAATCACAAAATACACCAAATTTCTTTAA
ACATATGCTTGGCTGAATATTCCTATAGCTCATACAAGCCCACATATTTCATTTATTTCACATTT
TAGTCCCTCAAAAACTCATTTTCACAATTTAGTCCATTTTACTCAAATTCATCAAAAATTCAAAG
ACAAAATATACTAACCCAAAACATATATTTCATTTTCCATACTAACTTCACAAAGCTTACAAAAT
CAACAATGACATAACTCAAAATCATCATCAAAATAAAAAATTAGGGCATGGGCTTGATAGATTAC
TAAGCAACGAATACAAAAACGTAGAAATCATCAAAAACCAATCAAATTTCATACCTTAATCACCA
AAATAAGTAGCCGAACCCTAGCTTGTATTTTCTTTTCTTTTCCTTTGTATTTCCTGTTATGGATG
AACACAAATGATCCATTTTCATGCCTTTGTTTTATTATAAATCATTTAATTCTTCAGTTACAAAT
TTGCCTGTATAAAGTAACATATAAAATCACATATATTAAGGCCATTAATGTCCATTAAACTTGTT
AATGGTCCAATTGCAACATAAGGACCTTTCATTTACAAAGACATATCAAATAAGCACTTTAACCA
ATAGCAGGCAACATTGTTTAAAAG
Found at i:72668009 original size:33 final size:33
Alignment explanation
Indices: 72667984--72668050 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
72667974 TAGTTTTAGG
72667984 TTACCCTACTAAAGGTTTCAGTATAGTCTATCA
1 TTACCCTACTAAAGGTTTCAGTATAGTCTATCA
72668017 TTACCCTACTAAAGGTTTCAGTATAGTCTATCA
1 TTACCCTACTAAAGGTTTCAGTATAGTCTATCA
72668050 T
1 T
72668051 CTACGATAAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.30, C:0.21, G:0.12, T:0.37
Consensus pattern (33 bp):
TTACCCTACTAAAGGTTTCAGTATAGTCTATCA
Found at i:72672369 original size:43 final size:43
Alignment explanation
Indices: 72672321--72672475 Score: 165
Period size: 43 Copynumber: 3.6 Consensus size: 43
72672311 AGCTCGTACA
* * *
72672321 ATGCCAACGTTCCAGACGTGGTCTTACATGTAATCAAATATTG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCAAATATCG
** * *
72672364 ATGCCATTGTCCCAGATAG-GGTCTTACACGAAATCAAATA-CG
1 ATGCCAACGTCCCAGA-CGTGGTCTTACACGTAATCAAATATCG
*
72672406 ATGCCAACGTCCCAGACGTGGTCTTATACGTATATCATAA-ATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTA-ATCA-AATATCG
* *
72672450 ATGCCAATGTCCC-GATGTGGTCTTAC
1 ATGCCAACGTCCCAGACGTGGTCTTAC
72672476 GCGATAACAC
Statistics
Matches: 92, Mismatches: 15, Indels: 10
0.79 0.13 0.09
Matches are distributed among these distances:
41 1 0.01
42 26 0.28
43 48 0.52
44 17 0.18
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.28
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCAAATATCG
Found at i:72676132 original size:34 final size:34
Alignment explanation
Indices: 72676094--72676159 Score: 80
Period size: 34 Copynumber: 1.9 Consensus size: 34
72676084 TTAAACTACC
* *
72676094 AACATACATTTCATACT-TTCATAATAATAAAATA
1 AACATACATGT-ATACTCTTCATAACAATAAAATA
* *
72676128 AACATATATGTATACTCTTGATAACAATAAAA
1 AACATACATGTATACTCTTCATAACAATAAAA
72676160 CATCGCCATA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
33 5 0.19
34 22 0.81
ACGTcount: A:0.50, C:0.14, G:0.03, T:0.33
Consensus pattern (34 bp):
AACATACATGTATACTCTTCATAACAATAAAATA
Found at i:72679419 original size:24 final size:24
Alignment explanation
Indices: 72679387--72679434 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
72679377 TCTTAGGCCG
72679387 TACGAAATTTTAGAGAGAATCAGA
1 TACGAAATTTTAGAGAGAATCAGA
72679411 TACGAAATTTTAGAGAGAATCAGA
1 TACGAAATTTTAGAGAGAATCAGA
72679435 CCTATAGCAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.46, C:0.08, G:0.21, T:0.25
Consensus pattern (24 bp):
TACGAAATTTTAGAGAGAATCAGA
Found at i:72681050 original size:19 final size:17
Alignment explanation
Indices: 72681016--72681050 Score: 52
Period size: 19 Copynumber: 1.9 Consensus size: 17
72681006 CCAAAACCAA
72681016 ATCAACCAAACATAATC
1 ATCAACCAAACATAATC
72681033 ATCAAGCCAAAGCATAAT
1 ATCAA-CCAAA-CATAAT
72681051 TCCAAGATTA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 5 0.31
18 5 0.31
19 6 0.38
ACGTcount: A:0.51, C:0.26, G:0.06, T:0.17
Consensus pattern (17 bp):
ATCAACCAAACATAATC
Found at i:72682107 original size:39 final size:39
Alignment explanation
Indices: 72682064--72682141 Score: 138
Period size: 39 Copynumber: 2.0 Consensus size: 39
72682054 TTAAACGTTG
*
72682064 AGGTTAGCATTTGGGTTGTTGAATATGCCGAACTTGGAT
1 AGGTTAGCATTTGGGTTGTTCAATATGCCGAACTTGGAT
*
72682103 AGGTTAGCATTTGGGTTGTTCAATATGCCGAATTTGGAT
1 AGGTTAGCATTTGGGTTGTTCAATATGCCGAACTTGGAT
72682142 TTAGGGAGAG
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.23, C:0.10, G:0.29, T:0.37
Consensus pattern (39 bp):
AGGTTAGCATTTGGGTTGTTCAATATGCCGAACTTGGAT
Found at i:72683830 original size:48 final size:48
Alignment explanation
Indices: 72683772--72684251 Score: 907
Period size: 48 Copynumber: 10.1 Consensus size: 48
72683762 AATTCTAAAT
72683772 TGTG-ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TGTGAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
72683819 TGTGAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TGTGAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
*
72683867 TGTG-ATAAGGCCTAATGGCCGATGTGATAAATGTGAAAGTGTATATA
1 TGTGAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
72683914 TGTGAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TGTGAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
72683962 TGTG-ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TGTGAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
72684009 TGTGAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TGTGAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
72684057 TGTG-ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TGTGAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
72684104 TGTGAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TGTGAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
72684152 TGTG-ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TGTGAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
*
72684199 TGTGAATAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TGTGAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
72684247 TGTGA
1 TGTGA
72684252 CGGGGCCGAG
Statistics
Matches: 425, Mismatches: 3, Indels: 9
0.97 0.01 0.02
Matches are distributed among these distances:
47 191 0.45
48 234 0.55
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.30
Consensus pattern (48 bp):
TGTGAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
Found at i:72683918 original size:95 final size:95
Alignment explanation
Indices: 72683772--72684302 Score: 947
Period size: 95 Copynumber: 5.6 Consensus size: 95
72683762 AATTCTAAAT
72683772 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAATAAGGCCTAATG
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAATAAGGCCTAATG
72683837 GCCGATGTGATGAATGTGAAAGTGTATATA
66 GCCGATGTGATGAATGTGAAAGTGTATATA
*
72683867 TGTGATAAGGCCTAATGGCCGATGTGATAAATGTGAAAGTGTATATATGTGAATAAGGCCTAATG
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAATAAGGCCTAATG
72683932 GCCGATGTGATGAATGTGAAAGTGTATATA
66 GCCGATGTGATGAATGTGAAAGTGTATATA
72683962 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAATAAGGCCTAATG
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAATAAGGCCTAATG
72684027 GCCGATGTGATGAATGTGAAAGTGTATATA
66 GCCGATGTGATGAATGTGAAAGTGTATATA
72684057 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAATAAGGCCTAATG
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAATAAGGCCTAATG
72684122 GCCGATGTGATGAATGTGAAAGTGTATATA
66 GCCGATGTGATGAATGTGAAAGTGTATATA
*
72684152 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAATAGGGCCTAATG
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAATAAGGCCTAATG
72684217 GCCGATGTGATGAATGTGAAAGTGTATATA
66 GCCGATGTGATGAATGTGAAAGTGTATATA
*** * * * * * * *
72684247 TGTGACGGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTG-ATAAG
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAATAAG
72684303 TCCCGAAGGG
Statistics
Matches: 422, Mismatches: 14, Indels: 1
0.97 0.03 0.00
Matches are distributed among these distances:
94 4 0.01
95 418 0.99
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (95 bp):
TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAATAAGGCCTAATG
GCCGATGTGATGAATGTGAAAGTGTATATA
Found at i:72686392 original size:29 final size:29
Alignment explanation
Indices: 72686357--72686430 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
72686347 GTTGTGAGAT
* *
72686357 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
72686386 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
72686415 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
72686431 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:72686767 original size:40 final size:41
Alignment explanation
Indices: 72686723--72686908 Score: 184
Period size: 40 Copynumber: 4.6 Consensus size: 41
72686713 CATTTGAATG
*
72686723 ATATCCGGGCTAAGTCCCGAAG-GCAATT-GAGCTAGTGATT
1 ATATCCGGGCTAAGTCCCGAAGAGC-ATTCGTGCTAGTGATT
* * * * *
72686763 ATATCCGGGCTAAGACCCGAAG-GCATTGGTGCGAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATT
* * * * *
72686803 AAATCCGGGCTAAATTCCAAAGAGCATTCGTGCTAGTGA-G
1 ATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATT
* * * *
72686843 GTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTGGTG-TT
1 ATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATT
*
72686883 ATATCCGGGCTAGGTCCCGAAGAGCA
1 ATATCCGGGCTAAGTCCCGAAGAGCA
72686909 ATCATGCTGG
Statistics
Matches: 118, Mismatches: 25, Indels: 6
0.79 0.17 0.04
Matches are distributed among these distances:
39 3 0.03
40 102 0.86
41 13 0.11
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (41 bp):
ATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATT
Found at i:72686917 original size:40 final size:40
Alignment explanation
Indices: 72686844--72686920 Score: 109
Period size: 40 Copynumber: 1.9 Consensus size: 40
72686834 GCTAGTGAGG
* * *
72686844 TATCCGGACTAAGTTCCGAAGAGCATTCGTGCTGGTGTTA
1 TATCCGGACTAAGTCCCGAAGAGCAATCATGCTGGTGTTA
* *
72686884 TATCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGTG
1 TATCCGGACTAAGTCCCGAAGAGCAATCATGCTGGTG
72686921 ACATGTATTC
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 32 1.00
ACGTcount: A:0.22, C:0.22, G:0.30, T:0.26
Consensus pattern (40 bp):
TATCCGGACTAAGTCCCGAAGAGCAATCATGCTGGTGTTA
Found at i:72689021 original size:39 final size:39
Alignment explanation
Indices: 72688978--72689055 Score: 138
Period size: 39 Copynumber: 2.0 Consensus size: 39
72688968 TTAAACGTTG
*
72688978 AGGTTAGCATTTGGGTTGTTGAATATGCCGAACTTGGAT
1 AGGTTAGCATTTGGGTTGTTCAATATGCCGAACTTGGAT
*
72689017 AGGTTAGCATTTGGGTTGTTCAATATGCCGAATTTGGAT
1 AGGTTAGCATTTGGGTTGTTCAATATGCCGAACTTGGAT
72689056 TTAGGGAGAG
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.23, C:0.10, G:0.29, T:0.37
Consensus pattern (39 bp):
AGGTTAGCATTTGGGTTGTTCAATATGCCGAACTTGGAT
Found at i:72690747 original size:48 final size:48
Alignment explanation
Indices: 72690685--72691163 Score: 898
Period size: 48 Copynumber: 10.1 Consensus size: 48
72690675 AATTCTAAAT
72690685 TGTG-ATAA-GCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TGTGAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
72690731 TGTGAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TGTGAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
*
72690779 TGTG-ATAAGGCCTAATGGCCGATGTGATAAATGTGAAAGTGTATATA
1 TGTGAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
72690826 TGTGAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TGTGAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
72690874 TGTG-ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TGTGAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
72690921 TGTGAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TGTGAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
72690969 TGTG-ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TGTGAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
72691016 TGTGAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TGTGAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
72691064 TGTG-ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TGTGAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
*
72691111 TGTGAATAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TGTGAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
72691159 TGTGA
1 TGTGA
72691164 CGGGGCCGAG
Statistics
Matches: 424, Mismatches: 3, Indels: 10
0.97 0.01 0.02
Matches are distributed among these distances:
46 4 0.01
47 191 0.45
48 229 0.54
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (48 bp):
TGTGAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
Found at i:72690804 original size:95 final size:95
Alignment explanation
Indices: 72690685--72691214 Score: 938
Period size: 95 Copynumber: 5.6 Consensus size: 95
72690675 AATTCTAAAT
72690685 TGTGATAA-GCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAATAAGGCCTAATG
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAATAAGGCCTAATG
72690749 GCCGATGTGATGAATGTGAAAGTGTATATA
66 GCCGATGTGATGAATGTGAAAGTGTATATA
*
72690779 TGTGATAAGGCCTAATGGCCGATGTGATAAATGTGAAAGTGTATATATGTGAATAAGGCCTAATG
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAATAAGGCCTAATG
72690844 GCCGATGTGATGAATGTGAAAGTGTATATA
66 GCCGATGTGATGAATGTGAAAGTGTATATA
72690874 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAATAAGGCCTAATG
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAATAAGGCCTAATG
72690939 GCCGATGTGATGAATGTGAAAGTGTATATA
66 GCCGATGTGATGAATGTGAAAGTGTATATA
72690969 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAATAAGGCCTAATG
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAATAAGGCCTAATG
72691034 GCCGATGTGATGAATGTGAAAGTGTATATA
66 GCCGATGTGATGAATGTGAAAGTGTATATA
*
72691064 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAATAGGGCCTAATG
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAATAAGGCCTAATG
72691129 GCCGATGTGATGAATGTGAAAGTGTATATA
66 GCCGATGTGATGAATGTGAAAGTGTATATA
*** * * * * * * *
72691159 TGTGACGGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTG-ATAAG
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAATAAG
72691215 TCCCGAAGGG
Statistics
Matches: 421, Mismatches: 14, Indels: 2
0.96 0.03 0.00
Matches are distributed among these distances:
94 12 0.03
95 409 0.97
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (95 bp):
TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAATAAGGCCTAATG
GCCGATGTGATGAATGTGAAAGTGTATATA
Found at i:72693293 original size:29 final size:29
Alignment explanation
Indices: 72693258--72693331 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
72693248 GTTGTGAGAT
* *
72693258 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
72693287 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
72693316 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
72693332 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:72693664 original size:39 final size:41
Alignment explanation
Indices: 72693621--72693804 Score: 191
Period size: 40 Copynumber: 4.6 Consensus size: 41
72693611 CATTTGAATG
*
72693621 ATATCCGGGCTAAGTCCCGAAG-GCATT-GAGCTAGTGATT
1 ATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATT
* * * * *
72693660 ATATCCGGGCTAAGACCCGAAG-GCATTGGTGCGAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATT
* * * *
72693700 AAATCCGGGCTAAATTCC-AAGAGCATTCGTGCTAGTGA-G
1 ATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATT
* * * *
72693739 GTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTGGTG-TT
1 ATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATT
*
72693779 ATATCCGGGCTAGGTCCCGAAGAGCA
1 ATATCCGGGCTAAGTCCCGAAGAGCA
72693805 ATCATGCTGG
Statistics
Matches: 118, Mismatches: 23, Indels: 7
0.80 0.16 0.05
Matches are distributed among these distances:
39 43 0.36
40 75 0.64
ACGTcount: A:0.26, C:0.22, G:0.29, T:0.24
Consensus pattern (41 bp):
ATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATT
Found at i:72693813 original size:40 final size:40
Alignment explanation
Indices: 72693740--72693816 Score: 109
Period size: 40 Copynumber: 1.9 Consensus size: 40
72693730 GCTAGTGAGG
* * *
72693740 TATCCGGACTAAGTTCCGAAGAGCATTCGTGCTGGTGTTA
1 TATCCGGACTAAGTCCCGAAGAGCAATCATGCTGGTGTTA
* *
72693780 TATCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGTG
1 TATCCGGACTAAGTCCCGAAGAGCAATCATGCTGGTG
72693817 ACATGTATTC
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 32 1.00
ACGTcount: A:0.22, C:0.22, G:0.30, T:0.26
Consensus pattern (40 bp):
TATCCGGACTAAGTCCCGAAGAGCAATCATGCTGGTGTTA
Found at i:72695907 original size:39 final size:39
Alignment explanation
Indices: 72695864--72695941 Score: 138
Period size: 39 Copynumber: 2.0 Consensus size: 39
72695854 TTAAACGTTG
*
72695864 AGGTTAGCATTTGGGTTGTTGAATATGCCGAACTTGGAT
1 AGGTTAGCATTTGGGTTGTTCAATATGCCGAACTTGGAT
*
72695903 AGGTTAGCATTTGGGTTGTTCAATATGCCGAATTTGGAT
1 AGGTTAGCATTTGGGTTGTTCAATATGCCGAACTTGGAT
72695942 TTAGGGAGAG
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.23, C:0.10, G:0.29, T:0.37
Consensus pattern (39 bp):
AGGTTAGCATTTGGGTTGTTCAATATGCCGAACTTGGAT
Found at i:72697693 original size:47 final size:47
Alignment explanation
Indices: 72697572--72698053 Score: 838
Period size: 47 Copynumber: 10.2 Consensus size: 47
72697562 AATTCTAAAT
72697572 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
72697619 TGTGAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TGTG-ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
*
72697667 TGTGATAAGGCCTAATGGCCGATGTGATAAATGTGAAAGTGTATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
72697714 TGTGAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TGTG-ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
72697762 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
72697809 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
72697856 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
72697903 TGTGAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TGTG-ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
72697951 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
*** * * * * * * *
72697998 TGTGACGGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
72698045 TGTGATAAG
1 TGTGATAAG
72698054 TCCCGAAGGG
Statistics
Matches: 417, Mismatches: 15, Indels: 6
0.95 0.03 0.01
Matches are distributed among these distances:
47 277 0.66
48 140 0.34
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
Found at i:72697718 original size:95 final size:95
Alignment explanation
Indices: 72697572--72698053 Score: 851
Period size: 95 Copynumber: 5.1 Consensus size: 95
72697562 AATTCTAAAT
72697572 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAATAAGGCCTAATG
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAATAAGGCCTAATG
72697637 GCCGATGTGATGAATGTGAAAGTGTATATA
66 GCCGATGTGATGAATGTGAAAGTGTATATA
*
72697667 TGTGATAAGGCCTAATGGCCGATGTGATAAATGTGAAAGTGTATATATGTGAATAAGGCCTAATG
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAATAAGGCCTAATG
72697732 GCCGATGTGATGAATGTGAAAGTGTATATA
66 GCCGATGTGATGAATGTGAAAGTGTATATA
72697762 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG-ATAAGGCCTAATG
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAATAAGGCCTAATG
72697826 GCCGATGTGATGAATGTGAAAGTGTATATA
66 GCCGATGTGATGAATGTGAAAGTGTATATA
72697856 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAATAAGGCCTAATG
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAATAAGGCCTAATG
72697921 GCCGATGTGATGAATGTGAAAGTGTATATA
66 GCCGATGTGATGAATGTGAAAGTGTATATA
*** * *
72697951 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG-ACGGGGCCGAGTG
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAATAAGGCCTAATG
* * * * *
72698015 GCCAACGTGATGGATGTGAAAGTGCATAAA
66 GCCGATGTGATGAATGTGAAAGTGTATATA
72698045 TGTGATAAG
1 TGTGATAAG
72698054 TCCCGAAGGG
Statistics
Matches: 374, Mismatches: 12, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
94 136 0.36
95 238 0.64
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (95 bp):
TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAATAAGGCCTAATG
GCCGATGTGATGAATGTGAAAGTGTATATA
Found at i:72697893 original size:189 final size:189
Alignment explanation
Indices: 72697572--72698053 Score: 856
Period size: 189 Copynumber: 2.5 Consensus size: 189
72697562 AATTCTAAAT
72697572 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAATAAGGCCTAATG
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG-ATAAGGCCTAATG
72697637 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATAAATGTG
65 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATAAATGTG
72697702 AAAGTGTATATATGTGAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
130 AAAGTGTATATATGTGAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
72697762 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
*
72697827 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
66 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATAAATGTGA
72697892 AAGTGTATATATGTGAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
131 AAGTGTATATATGTGAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
*** * *
72697951 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACGGGGCCGAGTGG
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
* * * * *
72698016 CCAACGTGATGGATGTGAAAGTGCATAAATGTGATAAG
66 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
72698054 TCCCGAAGGG
Statistics
Matches: 281, Mismatches: 11, Indels: 1
0.96 0.04 0.00
Matches are distributed among these distances:
189 230 0.82
190 51 0.18
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (189 bp):
TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATAAATGTGA
AAGTGTATATATGTGAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
Found at i:72700836 original size:43 final size:43
Alignment explanation
Indices: 72700705--72700876 Score: 150
Period size: 43 Copynumber: 4.0 Consensus size: 43
72700695 AAATTGTACA
* * * * * * * *
72700705 ATGCCAACGTCCCTGACGTGGTCTTACATGTAATCACATGTCA
1 ATGCCAATGTCCCAGACATGGTCTTACACGAAAACACATATCG
* * *
72700748 ATGCCATTGTCCCAGACAAGGTCTTACAC-AAATCACA-ATTACG
1 ATGCCAATGTCCCAGACATGGTCTTACACGAAAACACATA-T-CG
* *
72700791 ATGCCAATGTCCCAAACATGGTCTTACTCGAAAACACATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACACGAAAACACATATCG
* * * * *
72700834 ATGCCAACGTCCTAGACGTGGCCTTACACGAGAACACATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACACGAAAACACATATCG
72700877 GAAATCCTAT
Statistics
Matches: 104, Mismatches: 21, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
42 8 0.08
43 87 0.84
44 8 0.08
45 1 0.01
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.23
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATGGTCTTACACGAAAACACATATCG
Found at i:72702862 original size:40 final size:40
Alignment explanation
Indices: 72702768--72702912 Score: 184
Period size: 40 Copynumber: 3.6 Consensus size: 40
72702758 TACTCGAATG
*
72702768 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* * *
72702809 ACATCTGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * *
72702849 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
* *
72702889 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
72702913 CTTGTGCGAG
Statistics
Matches: 90, Mismatches: 12, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
39 1 0.01
40 61 0.68
41 27 0.30
42 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:72705250 original size:14 final size:15
Alignment explanation
Indices: 72705233--72705261 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
72705223 GCACGAAAAT
72705233 TTCACACAT-ATAAA
1 TTCACACATAATAAA
72705247 TTCACACATAATAAA
1 TTCACACATAATAAA
72705262 CACTGAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.52, C:0.21, G:0.00, T:0.28
Consensus pattern (15 bp):
TTCACACATAATAAA
Found at i:72705537 original size:18 final size:19
Alignment explanation
Indices: 72705514--72705552 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 19
72705504 TTTGTAATTA
*
72705514 ATTTGAA-TAATTGTTTCT
1 ATTTGAAGTAAATGTTTCT
72705532 ATTTGAAGTTAAATGTTTCT
1 ATTTGAAG-TAAATGTTTCT
72705552 A
1 A
72705553 AACATGATGT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 7 0.39
20 11 0.61
ACGTcount: A:0.31, C:0.05, G:0.13, T:0.51
Consensus pattern (19 bp):
ATTTGAAGTAAATGTTTCT
Found at i:72711115 original size:30 final size:30
Alignment explanation
Indices: 72711048--72711117 Score: 115
Period size: 29 Copynumber: 2.4 Consensus size: 30
72711038 ATCATCGACC
* *
72711048 AATGAAAAAGGATATCTTCGGCTATCGATT
1 AATGAAAAGGGATAGCTTCGGCTATCGATT
72711078 -ATGAAAAGGGATAGCTTCGGCTATCGATT
1 AATGAAAAGGGATAGCTTCGGCTATCGATT
72711107 AATGAAAAGGG
1 AATGAAAAGGG
72711118 GTGGTGATGA
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
29 27 0.73
30 10 0.27
ACGTcount: A:0.37, C:0.11, G:0.26, T:0.26
Consensus pattern (30 bp):
AATGAAAAGGGATAGCTTCGGCTATCGATT
Found at i:72711175 original size:45 final size:45
Alignment explanation
Indices: 72711100--72711189 Score: 119
Period size: 45 Copynumber: 2.0 Consensus size: 45
72711090 AGCTTCGGCT
* *
72711100 ATCGATTAATGAAAAGGGGTGGTGATGACCATCAACTATGAAAAG
1 ATCGATTAATGAAAAGGGATGGTGATGACCATCAAATATGAAAAG
* * *
72711145 ATCGATTTATGAAAAGGGATGGT-TTCGACCATTAAATATGAAAAG
1 ATCGATTAATGAAAAGGGATGGTGAT-GACCATCAAATATGAAAAG
72711190 GGACGTTTAC
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
44 1 0.03
45 38 0.97
ACGTcount: A:0.40, C:0.10, G:0.24, T:0.26
Consensus pattern (45 bp):
ATCGATTAATGAAAAGGGATGGTGATGACCATCAAATATGAAAAG
Found at i:72714932 original size:52 final size:52
Alignment explanation
Indices: 72714854--72714959 Score: 212
Period size: 52 Copynumber: 2.0 Consensus size: 52
72714844 AATTGATTGA
72714854 TTGCCTTACATAGTTACCTCAAAATAGAATGAATGGTAAGTTAAGTACCATG
1 TTGCCTTACATAGTTACCTCAAAATAGAATGAATGGTAAGTTAAGTACCATG
72714906 TTGCCTTACATAGTTACCTCAAAATAGAATGAATGGTAAGTTAAGTACCATG
1 TTGCCTTACATAGTTACCTCAAAATAGAATGAATGGTAAGTTAAGTACCATG
72714958 TT
1 TT
72714960 ATACGAACTT
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
52 54 1.00
ACGTcount: A:0.36, C:0.15, G:0.17, T:0.32
Consensus pattern (52 bp):
TTGCCTTACATAGTTACCTCAAAATAGAATGAATGGTAAGTTAAGTACCATG
Done.