Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 222 of 349
Found at i:72718300 original size:79 final size:79
Alignment explanation
Indices: 72718150--72718367 Score: 257
Period size: 79 Copynumber: 2.7 Consensus size: 79
72718140 GATGTCTGGG
* * * *
72718150 CTAAGTCCCGAAGGC-TTTGTGCTA-AGTGACCATATCCGGACTAAGAT-CCGAAGGCATTTGTG
1 CTAAGT-CCGAAGGCATTTGTGCGAGA-T-ACTATAACCGGGCTAAG-TCCCGAAGGCATTTGTG
72718212 CGAGATACTAAATCCGGA
62 CGAGATACTAAATCCGGA
*
72718230 CTAAGATCCGAAGGCATTTGTGCGAGATACTA-ATTCCGGGCTAAG-CCCGAAGGCATTTGTGCG
1 CTAAG-TCCGAAGGCATTTGTGCGAGATACTATA-ACCGGGCTAAGTCCCGAAGGCATTTGTGCG
* *
72718293 AGTTACTAAATCCGGG
64 AGATACTAAATCCGGA
* * *
72718309 TTAAGTCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTTG
1 CTAAGTCCGAAGGCATTTGTGCGAGATACTATAACCGGGCTAAGTCCCGAAGGCATTTG
72718368 AACGAGTAGC
Statistics
Matches: 122, Mismatches: 9, Indels: 15
0.84 0.06 0.10
Matches are distributed among these distances:
78 34 0.28
79 51 0.42
80 26 0.21
81 10 0.08
82 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.25
Consensus pattern (79 bp):
CTAAGTCCGAAGGCATTTGTGCGAGATACTATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
ATACTAAATCCGGA
Found at i:72718374 original size:40 final size:39
Alignment explanation
Indices: 72718147--72718367 Score: 266
Period size: 40 Copynumber: 5.6 Consensus size: 39
72718137 AATGATGTCT
* * * *
72718147 GGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCC
1 GGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAATCC
* *
72718187 GGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAATCC
1 GGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAATCC
* * *
72718227 GGACTAAGATCCGAAGGCATTTGTGCGAGATACTAATTCC
1 GGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAATCC
*
72718267 GGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAATCC
1 GGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAATCC
*
72718306 GGGTTAAGTCCGAAGGCATTTGTGCGAGTTACTATAA-CC
1 GGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTA-AATCC
*
72718345 GGGCTATGTCCCGAAGGCATTTG
1 GGGCTAAGT-CCGAAGGCATTTG
72718368 AACGAGTAGC
Statistics
Matches: 162, Mismatches: 15, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
39 69 0.43
40 85 0.52
41 8 0.05
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (39 bp):
GGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAATCC
Found at i:72718374 original size:79 final size:77
Alignment explanation
Indices: 72718197--72718400 Score: 250
Period size: 79 Copynumber: 2.6 Consensus size: 77
72718187 GGACTAAGAT
**
72718197 CCGAAGGCATTTGTGCGAGATACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTA
1 CCGAAGGCATTTGTGCGAG-TACTAAATCCGGGTTAAG-TCCGAAGGCATTTGTGCGAGATACTA
*
72718262 ATTCCGGGCTAAGC
64 ATACCGGGCTAAGC
*
72718276 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCGAAGGCATTTGTGCGAGTTACT-A
1 CCGAAGGCATTTGTGCGAG-TACTAAATCCGGGTTAAGTCCGAAGGCATTTGTGCGAGATACTAA
*
72718340 TAACCGGGCTATGTC
65 T-ACCGGGCTAAG-C
** * *
72718355 CCGAAGGCATTTGAACGAGTAGCTATATCC-GGTTAAATTCCGAAGG
1 CCGAAGGCATTTGTGCGAGTA-CTAAATCCGGGTT-AAGTCCGAAGG
72718401 TATGTGATTT
Statistics
Matches: 111, Mismatches: 10, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
77 2 0.02
78 39 0.35
79 70 0.63
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (77 bp):
CCGAAGGCATTTGTGCGAGTACTAAATCCGGGTTAAGTCCGAAGGCATTTGTGCGAGATACTAAT
ACCGGGCTAAGC
Found at i:72718663 original size:18 final size:17
Alignment explanation
Indices: 72718640--72718679 Score: 64
Period size: 16 Copynumber: 2.4 Consensus size: 17
72718630 GATGTGATGA
72718640 ATGTGAAAGTGTATATAT
1 ATGTG-AAGTGTATATAT
72718658 ATGTG-AGTGTATATAT
1 ATGTGAAGTGTATATAT
72718674 ATGTGA
1 ATGTGA
72718680 TAAGGCCTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
16 16 0.76
18 5 0.24
ACGTcount: A:0.35, C:0.00, G:0.25, T:0.40
Consensus pattern (17 bp):
ATGTGAAGTGTATATAT
Found at i:72718668 original size:16 final size:16
Alignment explanation
Indices: 72718647--72718679 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
72718637 TGAATGTGAA
72718647 AGTGTATATATATGTG
1 AGTGTATATATATGTG
72718663 AGTGTATATATATGTG
1 AGTGTATATATATGTG
72718679 A
1 A
72718680 TAAGGCCTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.33, C:0.00, G:0.24, T:0.42
Consensus pattern (16 bp):
AGTGTATATATATGTG
Found at i:72718720 original size:47 final size:47
Alignment explanation
Indices: 72718669--72718871 Score: 325
Period size: 47 Copynumber: 4.3 Consensus size: 47
72718659 TGTGAGTGTA
72718669 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
72718716 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
72718763 TATATATGTGATAAGGCCTGATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* * * * * * *
72718810 TATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
72718857 TATAAATGTGATAAG
1 TATATATGTGATAAG
72718872 TCCCGAAGGG
Statistics
Matches: 144, Mismatches: 12, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 144 1.00
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.29
Consensus pattern (47 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
Found at i:72719046 original size:37 final size:35
Alignment explanation
Indices: 72718990--72719066 Score: 100
Period size: 37 Copynumber: 2.1 Consensus size: 35
72718980 CCGAGCTCTA
* * *
72718990 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATG-CC-GGT
*
72719027 AAGACCCGATAACTTCGTGTGGAGATTATGCCGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGCCGGT
72719062 AAGAC
1 AAGAC
72719067 TTCGTAATAA
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
35 8 0.22
36 2 0.06
37 26 0.72
ACGTcount: A:0.25, C:0.19, G:0.31, T:0.25
Consensus pattern (35 bp):
AAGACCCGATAACTACGTGTGGAGATTATGCCGGT
Found at i:72720558 original size:40 final size:40
Alignment explanation
Indices: 72720277--72720544 Score: 389
Period size: 40 Copynumber: 6.8 Consensus size: 40
72720267 GAGAATTGAG
* *
72720277 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCATGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
72720317 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
72720357 AGTGATGTATCCGGGCTAAGT-CCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
72720396 AGTGATGTATCCGGGCTAAGT-CCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
72720435 AGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * * * *
72720475 AGTAATATATCCGTGCTAA-ACCTCGAAGAGCATTCATGCT
1 AGTGATGTATCCGGGCTAAGTCC-CGAAGAGCATTCGTGCT
* * * *
72720515 GGTGTTATATCCGGGCTAGGTCCCGAAGAG
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAG
72720545 TAATCATGCT
Statistics
Matches: 209, Mismatches: 16, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
39 78 0.37
40 129 0.62
41 2 0.01
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:72724768 original size:79 final size:80
Alignment explanation
Indices: 72724672--72724843 Score: 224
Period size: 79 Copynumber: 2.2 Consensus size: 80
72724662 AGACTAAGAT
*
72724672 CCGAAGGCATTTGTGCGAGATACTAAATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACT
1 CCGAAGGCATTTGTGCGAGATACTAAATCCGGACTAAG-TCCCAAAGGCATTTGTGCGAGATACT
*
72724736 A-ATTCCGGGCTAAG-C
65 ATA-ACCGGGCTAAGTC
* * ** *
72724751 CCGAAGGCATTTGTGCGAGTTACTAAATCTGGGTTAAGTCCCAAAGGCATTTGTGCGAGTTACTA
1 CCGAAGGCATTTGTGCGAGATACTAAATCCGGACTAAGTCCCAAAGGCATTTGTGCGAGATACTA
* *
72724816 TAACTGGGCTATGTC
66 TAACCGGGCTAAGTC
72724831 CCGAAGGCATTTG
1 CCGAAGGCATTTG
72724844 AACGAGTAGC
Statistics
Matches: 81, Mismatches: 9, Indels: 5
0.85 0.09 0.05
Matches are distributed among these distances:
78 1 0.01
79 65 0.80
80 15 0.19
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.26
Consensus pattern (80 bp):
CCGAAGGCATTTGTGCGAGATACTAAATCCGGACTAAGTCCCAAAGGCATTTGTGCGAGATACTA
TAACCGGGCTAAGTC
Found at i:72724850 original size:40 final size:40
Alignment explanation
Indices: 72724619--72724843 Score: 235
Period size: 40 Copynumber: 5.7 Consensus size: 40
72724609 TTGAATGATG
* * * *
72724619 TCTGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCTGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
** * *
72724659 TCCAGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAA
1 TCTGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* * * *
72724699 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCTGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
72724739 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCTGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
72724778 TCTGGGTTAAGTCCCAAAGGCATTTGTGCGAGTTACTATAA
1 TCTGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
72724819 -CTGGGCTATGTCCCGAAGGCATTTG
1 TCTGGGCTAAGTCCCGAAGGCATTTG
72724844 AACGAGTAGC
Statistics
Matches: 161, Mismatches: 19, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
39 34 0.21
40 117 0.73
41 10 0.06
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (40 bp):
TCTGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:72724865 original size:79 final size:78
Alignment explanation
Indices: 72724672--72724866 Score: 216
Period size: 79 Copynumber: 2.5 Consensus size: 78
72724662 AGACTAAGAT
* *
72724672 CCGAAGGCATTTGTGCGAGATACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTA
1 CCGAAGGCATTTGTGCGAGATACTAAATCCGG-TTAAGATCCAAAGGCATTTGTGCGAGATACTA
*
72724737 ATTCCGGGCTAAGC
65 ATACCGGGCTAAGC
* * *
72724751 CCGAAGGCATTTGTGCGAGTTACTAAATCTGGGTTAAG-TCCCAAAGGCATTTGTGCGAGTTACT
1 CCGAAGGCATTTGTGCGAGATACTAAATC-CGGTTAAGAT-CCAAAGGCATTTGTGCGAGATACT
* *
72724815 -ATAACTGGGCTATGTC
64 AAT-ACCGGGCTAAG-C
** *
72724831 CCGAAGGCATTTGAACGAG-TAGCTATATCCGGTTAA
1 CCGAAGGCATTTGTGCGAGATA-CTAAATCCGGTTAA
72724867 ATTCCGAAGG
Statistics
Matches: 99, Mismatches: 12, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
78 3 0.03
79 70 0.71
80 26 0.26
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (78 bp):
CCGAAGGCATTTGTGCGAGATACTAAATCCGGTTAAGATCCAAAGGCATTTGTGCGAGATACTAA
TACCGGGCTAAGC
Found at i:72725122 original size:47 final size:47
Alignment explanation
Indices: 72725068--72725235 Score: 246
Period size: 47 Copynumber: 3.6 Consensus size: 47
72725058 AAGGGTTGGT
*
72725068 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGACGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
72725115 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * * *
72725162 AATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGAAG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
72725209 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
72725236 TCCCGAAGGG
Statistics
Matches: 109, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 109 1.00
ACGTcount: A:0.34, C:0.08, G:0.31, T:0.27
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:72725410 original size:37 final size:37
Alignment explanation
Indices: 72725354--72725432 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
72725344 CCGAGCTCTA
* * *
72725354 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
72725391 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
72725428 AAGAC
1 AAGAC
72725433 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:72731814 original size:16 final size:15
Alignment explanation
Indices: 72731788--72731819 Score: 55
Period size: 16 Copynumber: 2.1 Consensus size: 15
72731778 ACTAGATCGG
72731788 CAAAAGCCGAAAAGC
1 CAAAAGCCGAAAAGC
72731803 CAAAATGCCGAAAAGC
1 CAAAA-GCCGAAAAGC
72731819 C
1 C
72731820 GGTATTTTGA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 5 0.31
16 11 0.69
ACGTcount: A:0.50, C:0.28, G:0.19, T:0.03
Consensus pattern (15 bp):
CAAAAGCCGAAAAGC
Found at i:72732306 original size:27 final size:27
Alignment explanation
Indices: 72732219--72732314 Score: 94
Period size: 27 Copynumber: 3.7 Consensus size: 27
72732209 TGGTGGCTAC
* *
72732219 GCCACAATTATCTGATCTGGTG--GCT
1 GCCACAATTATCTGTTCTGGTGACTCT
* *
72732244 -CCA-TATATATCTGTTCTGGTGGCTCT
1 GCCACAAT-TATCTGTTCTGGTGACTCT
72732270 GCCACAATTATCTGTATCTGGTGACTCT
1 GCCACAATTATCTGT-TCTGGTGACTCT
*
72732298 GTCAC-ATTATCTGTTCT
1 GCCACAATTATCTGTTCT
72732315 AGCAGCCATG
Statistics
Matches: 59, Mismatches: 6, Indels: 11
0.78 0.08 0.14
Matches are distributed among these distances:
23 2 0.03
24 16 0.27
26 5 0.08
27 19 0.32
28 17 0.29
ACGTcount: A:0.19, C:0.24, G:0.19, T:0.39
Consensus pattern (27 bp):
GCCACAATTATCTGTTCTGGTGACTCT
Found at i:72736363 original size:28 final size:29
Alignment explanation
Indices: 72736329--72736387 Score: 102
Period size: 28 Copynumber: 2.0 Consensus size: 29
72736319 TGGAGTTGGC
72736329 AGCAGTGATATTTGCACTT-GATTTGGAG
1 AGCAGTGATATTTGCACTTAGATTTGGAG
72736357 AGCAGTGATATTTGCACTTAAGATTTGGAG
1 AGCAGTGATATTTGCACTT-AGATTTGGAG
72736387 A
1 A
72736388 CATTACTTGT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
28 19 0.66
30 10 0.34
ACGTcount: A:0.29, C:0.10, G:0.27, T:0.34
Consensus pattern (29 bp):
AGCAGTGATATTTGCACTTAGATTTGGAG
Found at i:72745162 original size:38 final size:38
Alignment explanation
Indices: 72745101--72745290 Score: 173
Period size: 38 Copynumber: 5.1 Consensus size: 38
72745091 ATTTGATGTG
* *
72745101 TATCCGGGCTTAAAGACCCGCAGGGTAT-ATGCTGGAATTA
1 TATCCGGG-TTAAA-TCCCGCAGGCT-TCATGCTGGAATTA
*
72745141 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAA-TA
1 TATCCGGGTTAAATCCCGCAGGCTTCATGCTGG-AATTA
* * *
72745179 TATCCAGGTTAAATCCCGCAGGCTTCGTGCTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTCATGCTGGAATTA
* *
72745217 TATCCGAGTTAAAT-CC-CA--C--AATGCTGGAATTA
1 TATCCGGGTTAAATCCCGCAGGCTTCATGCTGGAATTA
* * *
72745249 TATCCGGGTTAAATCCCGCAAGCCT-AGTGCTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTCA-TGCTGGAATTA
72745287 TATC
1 TATC
72745291 TGAGTTTAAA
Statistics
Matches: 128, Mismatches: 12, Indels: 22
0.79 0.07 0.14
Matches are distributed among these distances:
32 23 0.18
33 2 0.02
34 3 0.02
36 3 0.02
37 5 0.04
38 77 0.60
39 7 0.05
40 8 0.06
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.29
Consensus pattern (38 bp):
TATCCGGGTTAAATCCCGCAGGCTTCATGCTGGAATTA
Found at i:72745260 original size:108 final size:110
Alignment explanation
Indices: 72745129--72745327 Score: 294
Period size: 108 Copynumber: 1.8 Consensus size: 110
72745119 CGCAGGGTAT
* * *
72745129 ATGCTGGAATTATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATATATC-CAGGTTAAA-
1 ATGCTGGAATTATATCCGGGTTAAATCCCGCAAGCCTAGTGCTGGTAATATATCTCAGGTTAAAG
*
72745192 TCCCGCAGGCTTCGTGCTGGTATTATATCCGAGTTAAATCCCACA
66 TCCCGCAGACTTCGTGCTGGTATTATATCCGAGTTAAATCCCACA
* * *
72745237 ATGCTGGAATTATATCCGGGTTAAATCCCGCAAGCCTAGTGCTGGTATTATATCTGAGTTTAAAG
1 ATGCTGGAATTATATCCGGGTTAAATCCCGCAAGCCTAGTGCTGGTAATATATCTCAGGTTAAAG
* * *
72745302 TCCTGTAGACTTCGTGCTGGTGTTAT
66 TCCCGCAGACTTCGTGCTGGTATTAT
72745328 GTTCGGGTTT
Statistics
Matches: 79, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
108 50 0.63
109 7 0.09
110 22 0.28
ACGTcount: A:0.24, C:0.21, G:0.23, T:0.32
Consensus pattern (110 bp):
ATGCTGGAATTATATCCGGGTTAAATCCCGCAAGCCTAGTGCTGGTAATATATCTCAGGTTAAAG
TCCCGCAGACTTCGTGCTGGTATTATATCCGAGTTAAATCCCACA
Found at i:72746448 original size:30 final size:30
Alignment explanation
Indices: 72746404--72746492 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
72746394 CAAAGATAAC
72746404 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
72746433 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
72746463 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
72746493 CAATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:72746452 original size:15 final size:15
Alignment explanation
Indices: 72746404--72746483 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
72746394 CAAAGATAAC
*
72746404 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
72746418 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
72746433 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
72746448 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
72746463 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
72746478 AAGAAA
1 AAGAAA
72746484 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:72746492 original size:15 final size:15
Alignment explanation
Indices: 72746415--72746492 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
72746405 AGAAAACCGA
72746415 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
72746430 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
72746444 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
72746459 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
72746475 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
72746490 ATA
1 ATA
72746493 CAATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:72748069 original size:44 final size:45
Alignment explanation
Indices: 72748006--72748179 Score: 215
Period size: 46 Copynumber: 3.8 Consensus size: 45
72747996 TGTAACCCGC
72748006 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG-CGTTCGAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGTTCGAT
* * * *
72748050 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACG-TTCGAT
* *** * *
72748096 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACGTTCG-AT
*
72748143 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
72748180 TGCCCAAATA
Statistics
Matches: 108, Mismatches: 18, Indels: 6
0.82 0.14 0.05
Matches are distributed among these distances:
44 36 0.33
45 1 0.01
46 38 0.35
47 33 0.31
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGTTCGAT
Found at i:72748171 original size:93 final size:91
Alignment explanation
Indices: 72748014--72748183 Score: 295
Period size: 93 Copynumber: 1.8 Consensus size: 91
72748004 GCCCATAAGT
*
72748014 GAACTCGGACTCAACTCAACGAGCTCGGCGTTCGATCCATAAGTGAACTCGGACTCAACTCAACG
1 GAACTCGGACTCAACTCAACGAGCTCGGCATTCGATCCATAAGTGAACTCGGACTCAACTCAACG
72748079 AGCTCGGATGCCTAGTTACATCTCTC
66 AGCTCGGATGCCTAGTTACATCTCTC
*
72748105 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGG-CATTCG-ATCCATAAGTGAACTCGGACTCAACTCAA
*
72748170 CGAGTTCGGATGCC
64 CGAGCTCGGATGCC
72748184 CAAATATCCT
Statistics
Matches: 74, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
91 27 0.36
92 5 0.07
93 42 0.57
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (91 bp):
GAACTCGGACTCAACTCAACGAGCTCGGCATTCGATCCATAAGTGAACTCGGACTCAACTCAACG
AGCTCGGATGCCTAGTTACATCTCTC
Found at i:72748198 original size:46 final size:44
Alignment explanation
Indices: 72748011--72748198 Score: 127
Period size: 44 Copynumber: 4.1 Consensus size: 44
72748001 CCCGCCCATA
* * ** *
72748011 AGTGAACTCGGACTCAACTCAACGAGCTCGG-CGTTC-GATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATCC-T
* *
72748054 AAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA---A-ATC-CT
* * *
72748104 --CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGC--ATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCCCAAATCC-T
72748147 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCC-AA-ATCCT
72748194 AGTGA
1 AGTGA
72748199 CATGTCACTT
Statistics
Matches: 114, Mismatches: 13, Indels: 32
0.72 0.08 0.20
Matches are distributed among these distances:
42 1 0.01
43 4 0.04
44 35 0.31
45 1 0.01
46 33 0.29
47 28 0.25
48 4 0.04
49 3 0.03
50 4 0.04
51 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (44 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATCCT
Found at i:72750478 original size:29 final size:29
Alignment explanation
Indices: 72750441--72750524 Score: 100
Period size: 29 Copynumber: 2.9 Consensus size: 29
72750431 GATAACAAGA
*
72750441 AAACC-GAATAAAGAAATCCAAGATAGAG
1 AAACCAGAATAAAGAAATCCAAGATAAAG
72750469 AAACCAGAATAAAGAAATCC-AGAATAAAG
1 AAACCAGAATAAAGAAATCCAAG-ATAAAG
* * *
72750498 AGATCCAGGATAAAGAAACCCAAGATA
1 A-AACCAGAATAAAGAAATCCAAGATA
72750525 CGATACTATG
Statistics
Matches: 48, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
28 7 0.15
29 20 0.42
30 19 0.40
31 2 0.04
ACGTcount: A:0.57, C:0.15, G:0.17, T:0.11
Consensus pattern (29 bp):
AAACCAGAATAAAGAAATCCAAGATAAAG
Found at i:72750490 original size:15 final size:15
Alignment explanation
Indices: 72750437--72750515 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
72750427 CAAAGATAAC
*
72750437 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
72750451 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
*
72750466 GAGAAA-CCAGAATA
1 AAGAAATCCAGAATA
72750480 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
72750495 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
72750510 AAGAAA
1 AAGAAA
72750516 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
14 20 0.36
15 35 0.64
ACGTcount: A:0.59, C:0.13, G:0.18, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:72750524 original size:15 final size:15
Alignment explanation
Indices: 72750448--72750524 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
72750438 AGAAAACCGA
72750448 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
*
72750463 ATAGAGAAA-CC-AG
1 ATAAAGAAATCCAAG
72750476 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
72750491 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
72750507 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
72750522 ATA
1 ATA
72750525 CGATACTATG
Statistics
Matches: 52, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
13 2 0.04
14 10 0.19
15 39 0.75
16 1 0.02
ACGTcount: A:0.57, C:0.14, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:72751931 original size:11 final size:11
Alignment explanation
Indices: 72751915--72751939 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
72751905 AACTTTCATC
72751915 TCACATATGTA
1 TCACATATGTA
72751926 TCACATATGTA
1 TCACATATGTA
72751937 TCA
1 TCA
72751940 TAAACTTTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.36, C:0.20, G:0.08, T:0.36
Consensus pattern (11 bp):
TCACATATGTA
Found at i:72753532 original size:44 final size:44
Alignment explanation
Indices: 72753469--72753641 Score: 197
Period size: 44 Copynumber: 3.8 Consensus size: 44
72753459 TGTAACCCGC
72753469 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGCGTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGCGTTGCAT
*
72753513 CCATAAGTGAACTCGGACTCAACTCAACGAGCTC-G-GATGCCTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGCGTTG-C-A--T
* *** * *
72753559 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGG-CGTT-GCAT
*
72753606 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
72753642 ATGCCAAATA
Statistics
Matches: 108, Mismatches: 12, Indels: 16
0.79 0.09 0.12
Matches are distributed among these distances:
42 3 0.03
43 2 0.02
44 35 0.32
46 33 0.31
47 30 0.28
48 1 0.01
49 1 0.01
50 2 0.02
51 1 0.01
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.21
Consensus pattern (44 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGCGTTGCAT
Found at i:72753634 original size:93 final size:91
Alignment explanation
Indices: 72753477--72753646 Score: 295
Period size: 93 Copynumber: 1.8 Consensus size: 91
72753467 GCCCATAAGT
*
72753477 GAACTCGGACTCAACTCAACGAGCTCGGCGTTGCATCCATAAGTGAACTCGGACTCAACTCAACG
1 GAACTCGGACTCAACTCAACGAGCTCGGCATTGCATCCATAAGTGAACTCGGACTCAACTCAACG
72753542 AGCTCGGATGCCTAGTTACATCTCTC
66 AGCTCGGATGCCTAGTTACATCTCTC
*
72753568 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGG-CATT-GCATCCATAAGTGAACTCGGACTCAACTCAA
*
72753633 CGAGTTCGGATGCC
64 CGAGCTCGGATGCC
72753647 AAATATCCTA
Statistics
Matches: 74, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
91 27 0.36
92 3 0.04
93 44 0.59
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (91 bp):
GAACTCGGACTCAACTCAACGAGCTCGGCATTGCATCCATAAGTGAACTCGGACTCAACTCAACG
AGCTCGGATGCCTAGTTACATCTCTC
Found at i:72756534 original size:40 final size:40
Alignment explanation
Indices: 72756460--72756670 Score: 230
Period size: 40 Copynumber: 5.3 Consensus size: 40
72756450 TCTTCGAGAT
* * * *
72756460 TTAG-CCGGATATTGCCACTCGCAC-AAGGCCTTCGGGTC
1 TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGTC
* * *
72756498 TTAGCCCGGATATGGTCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGTC
*
72756538 TTAGCCCGGATATAGTCGCTAGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGTC
* * *
72756578 TTAGTCCGGATATAG-CAACTCGCACAAATGCCTTCGGATC
1 TTAGCCCGGATATAGTC-ACTAGCACAAATGCCTTCGGGTC
*** * * * *
72756618 TTAGTTTGGATATAGTCACTAGCATAAAAGCCTTCGAGCC
1 TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGTC
72756658 TTAGCCCGGATAT
1 TTAGCCCGGATAT
72756671 CATGCGAATA
Statistics
Matches: 144, Mismatches: 25, Indels: 6
0.82 0.14 0.03
Matches are distributed among these distances:
38 4 0.03
39 17 0.12
40 122 0.85
41 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (40 bp):
TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGTC
Found at i:72760795 original size:42 final size:41
Alignment explanation
Indices: 72760696--72760845 Score: 147
Period size: 42 Copynumber: 3.5 Consensus size: 41
72760686 GAGATATTGG
* * * *
72760696 GTAAGACCGTGTTTGGGACACAGGCCTCGATTTGAGATTTACGT
1 GTAAGACCATGTCTGGGACATAGGCATCGATTT--GATTT-CGT
72760740 GTAAGACCATGTCTGGGACATAGGCATCGTATTTGATTTCGT
1 GTAAGACCATGTCTGGGACATAGGCATCG-ATTTGATTTCGT
* * * * * *
72760782 GTAAGACCCTGTCTGGGATAGAGGCATCGATGCTGAATTACTT
1 GTAAGACCATGTCTGGGACATAGGCATCGAT-TTG-ATTTCGT
*
72760825 GTAAGACCATGTCCGGGACAT
1 GTAAGACCATGTCTGGGACAT
72760846 CGACATTGTA
Statistics
Matches: 89, Mismatches: 14, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
41 2 0.02
42 31 0.35
43 27 0.30
44 25 0.28
45 4 0.04
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.29
Consensus pattern (41 bp):
GTAAGACCATGTCTGGGACATAGGCATCGATTTGATTTCGT
Found at i:72767066 original size:49 final size:49
Alignment explanation
Indices: 72766941--72768140 Score: 2084
Period size: 49 Copynumber: 24.9 Consensus size: 49
72766931 GCCCTTCGGA
* * * * *
72766941 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
72766988 CCTGTCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72767035 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72767084 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72767131 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72767180 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
72767227 CTTATCACATATATATACACTTTCATATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
72767276 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
72767325 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72767372 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
72767419 CTTATCACATATATATACACTTTCATATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
72767468 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72767515 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72767562 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
72767611 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72767660 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72767707 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72767756 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72767803 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
72767852 CTTATCACATATATATACACTTTCACATTCATCATATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
72767901 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72767950 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
72767997 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
72768046 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
72768095 CTTATCACATATATATACACTTTCACATTCATCACATCAGCCATTA
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTA
72768141 CGCCATACTA
Statistics
Matches: 1107, Mismatches: 28, Indels: 34
0.95 0.02 0.03
Matches are distributed among these distances:
46 1 0.00
47 460 0.42
49 646 0.58
ACGTcount: A:0.30, C:0.28, G:0.08, T:0.33
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:72767103 original size:96 final size:96
Alignment explanation
Indices: 72766941--72768140 Score: 2124
Period size: 96 Copynumber: 12.5 Consensus size: 96
72766931 GCCCTTCGGA
* * * * * * *
72766941 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
72767004 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
72767035 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
72767100 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
72767131 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
72767196 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
*
72767227 CTTATCACATATATATACACTTTCATATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATAT
*
72767292 ACACTTTCACATTCATCACATCGGCTATTAGGC
64 ACACTTTCACATTCATCACATCGGCCATTAGGC
*
72767325 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
72767388 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
*
72767419 CTTATCACATATATATACACTTTCATATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
72767484 ACTTTCACATTCATCACATCGGCTATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
72767515 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATAT
72767578 ACACTTTCACATTCATCACATCGGCCATTAGGC
64 ACACTTTCACATTCATCACATCGGCCATTAGGC
*
72767611 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
72767676 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
72767707 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
72767772 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
72767803 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATAT
*
72767868 ACACTTTCACATTCATCATATCGGCCATTAGGC
64 ACACTTTCACATTCATCACATCGGCCATTAGGC
*
72767901 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
72767966 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
*
72767997 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGTCTTATCACATATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATAT
*
72768062 ACACTTTCACATTCATCACATCGGCTATTAGGC
64 ACACTTTCACATTCATCACATCGGCCATTAGGC
*
72768095 CTTATCACATATATATACACTTTCACATTCATCACATCAGCCATTA
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTA
72768141 CGCCATACTA
Statistics
Matches: 1066, Mismatches: 26, Indels: 24
0.96 0.02 0.02
Matches are distributed among these distances:
94 102 0.10
95 1 0.00
96 694 0.65
98 269 0.25
ACGTcount: A:0.30, C:0.28, G:0.08, T:0.33
Consensus pattern (96 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:72767259 original size:145 final size:144
Alignment explanation
Indices: 72766941--72768140 Score: 2115
Period size: 145 Copynumber: 8.3 Consensus size: 144
72766931 GCCCTTCGGA
* * * * * * * *
72766941 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCAC--ATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
72767004 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA-ATATATACACTTTCACATTCATCA
*
72767069 CATCGGCCATTAGGC
130 CATCGGCTATTAGGC
72767084 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
72767149 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC-ATATATACACTTTCACATTCATCAC
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATACACTTTCACATTCATCAC
*
72767213 ATCGGCCATTAGGC
131 ATCGGCTATTAGGC
*
72767227 CTTATCACATATATATACACTTTCATATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
*
72767292 ACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCAC-ATATATACACTTTCACATTCATC
64 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATACACTTTCACATTCATC
72767356 ACATCGGCTATTAGGC
129 ACATCGGCTATTAGGC
72767372 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
*
72767437 ACTTTCATATTCATCACATCGGCCATTAGGCCTTATCAC-ATATATACACTTTCACATTCATCAC
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATACACTTTCACATTCATCAC
72767501 ATCGGCTATTAGGC
131 ATCGGCTATTAGGC
72767515 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
72767580 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA-ATATATACACTTTCACATTCATCA
72767645 CATCGGCTATTAGGC
130 CATCGGCTATTAGGC
72767660 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
72767725 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC-ATATATACACTTTCACATTCATCAC
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATACACTTTCACATTCATCAC
*
72767789 ATCGGCCATTAGGC
131 ATCGGCTATTAGGC
72767803 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
*
72767868 ACACTTTCACATTCATCATATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCAT
64 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA-ATATATACACTTTCACATTCAT
72767933 CACATCGGCTATTAGGC
128 CACATCGGCTATTAGGC
72767950 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
*
72768015 ACTTTCACATTCATCACATCGGCCATTAGGTCTTATCACATATATATACACTTTCACATTCATCA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA-ATATATACACTTTCACATTCATCA
72768080 CATCGGCTATTAGGC
130 CATCGGCTATTAGGC
*
72768095 CTTATCACATATATATACACTTTCACATTCATCACATCAGCCATTA
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTA
72768141 CGCCATACTA
Statistics
Matches: 1024, Mismatches: 21, Indels: 20
0.96 0.02 0.02
Matches are distributed among these distances:
143 375 0.37
145 568 0.55
147 81 0.08
ACGTcount: A:0.30, C:0.28, G:0.08, T:0.33
Consensus pattern (144 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATACACTTTCACATTCATCAC
ATCGGCTATTAGGC
Found at i:72772845 original size:47 final size:47
Alignment explanation
Indices: 72772782--72773084 Score: 437
Period size: 47 Copynumber: 6.4 Consensus size: 47
72772772 CCCTTCGGGA
* * *
72772782 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGC
* * *
72772829 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGC
* *
72772876 CTTATCTCATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGC
* *
72772923 CTTATCACATATATACACTTTCACATTCATCACGTTGGTCACTC-GC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGC
* *
72772969 CCTATCACATATATACACTTTCACATTCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGC
* *
72773016 CCTATCACATATATATATACTTTCACATTCATCACATTGGCCACTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCACTCGGC
* *
72773065 CCTATCACATATATATACTT
1 CTTATCACATATATACACTT
72773085 GTACATCAAT
Statistics
Matches: 238, Mismatches: 15, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
46 44 0.18
47 149 0.63
49 45 0.19
ACGTcount: A:0.27, C:0.30, G:0.08, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGC
Found at i:72779161 original size:27 final size:27
Alignment explanation
Indices: 72779130--72779307 Score: 214
Period size: 27 Copynumber: 6.6 Consensus size: 27
72779120 TAAATTGTAC
72779130 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
72779157 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
72779183 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
72779211 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
*
72779239 AGCACTAAGTGTGCGATTTGATTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
72779266 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
72779293 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
72779308 GACTCGAATA
Statistics
Matches: 131, Mismatches: 17, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
27 108 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:72779244 original size:82 final size:81
Alignment explanation
Indices: 72779131--72779286 Score: 242
Period size: 82 Copynumber: 1.9 Consensus size: 81
72779121 AAATTGTACA
*
72779131 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGTA-GCACTAAGTG
72779195 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
72779212 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTATGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGTAGCACTAAGTG
*
72779277 TGCGAGTTGA
65 TGCGAATTGA
72779287 TTATATAGCA
Statistics
Matches: 68, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
81 15 0.22
82 52 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:72779298 original size:82 final size:81
Alignment explanation
Indices: 72779127--72779307 Score: 238
Period size: 82 Copynumber: 2.2 Consensus size: 81
72779117 GATTAAATTG
*
72779127 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGATGCACTAA
72779192 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
72779208 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTATG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGAT-GCACT
* **
72779272 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
72779290 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
72779308 GACTCGAATA
Statistics
Matches: 85, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
81 18 0.21
82 67 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGATGCACTAA
GTGTGCGAATTGACCA
Found at i:72787642 original size:27 final size:27
Alignment explanation
Indices: 72787612--72787789 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
72787602 ATATTGAGTC
* * * *
72787612 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
72787639 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
72787666 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
72787694 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
72787721 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
72787748 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
72787775 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
72787790 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:72787751 original size:82 final size:81
Alignment explanation
Indices: 72787633--72787788 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
72787623 TGCTATATAA
* *
72787633 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
72787698 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
72787715 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
72787779 CACTTAGTGC
65 CACTTAGTGC
72787789 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:72792645 original size:20 final size:20
Alignment explanation
Indices: 72792608--72792645 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
72792598 GCACTTAGGT
*
72792608 AATTGGGCCTCGATGGCTAA
1 AATTGGGCCTCAATGGCTAA
72792628 AATTGGG-CTCAATAGGCT
1 AATTGGGCCTCAAT-GGCT
72792646 TACGGGCCCA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 5 0.31
20 11 0.69
ACGTcount: A:0.26, C:0.18, G:0.29, T:0.26
Consensus pattern (20 bp):
AATTGGGCCTCAATGGCTAA
Found at i:72796460 original size:14 final size:13
Alignment explanation
Indices: 72796424--72796486 Score: 108
Period size: 13 Copynumber: 4.8 Consensus size: 13
72796414 AGAAAAATAT
*
72796424 TTTAATTTCTATG
1 TTTATTTTCTATG
72796437 TTTATTTTCTATG
1 TTTATTTTCTATG
72796450 TTTATTTTTCTATG
1 TTTA-TTTTCTATG
72796464 TTTATTTTCTATG
1 TTTATTTTCTATG
72796477 TTTATTTTCT
1 TTTATTTTCT
72796487 GTGAATTTAT
Statistics
Matches: 48, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
13 35 0.73
14 13 0.27
ACGTcount: A:0.16, C:0.08, G:0.06, T:0.70
Consensus pattern (13 bp):
TTTATTTTCTATG
Found at i:72796461 original size:27 final size:27
Alignment explanation
Indices: 72796429--72796484 Score: 112
Period size: 27 Copynumber: 2.1 Consensus size: 27
72796419 AATATTTTAA
72796429 TTTCTATGTTTATTTTCTATGTTTATT
1 TTTCTATGTTTATTTTCTATGTTTATT
72796456 TTTCTATGTTTATTTTCTATGTTTATT
1 TTTCTATGTTTATTTTCTATGTTTATT
72796483 TT
1 TT
72796485 CTGTGAATTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.14, C:0.07, G:0.07, T:0.71
Consensus pattern (27 bp):
TTTCTATGTTTATTTTCTATGTTTATT
Found at i:72797516 original size:21 final size:20
Alignment explanation
Indices: 72797492--72797533 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 20
72797482 ATGAAATGTG
72797492 TGAATAT-ATATAAGCTATGGC
1 TGAATATGAT-TAAGCT-TGGC
72797513 TGAATATGATTAAGCTTGGC
1 TGAATATGATTAAGCTTGGC
72797533 T
1 T
72797534 ATTATACCTC
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
20 5 0.25
21 13 0.65
22 2 0.10
ACGTcount: A:0.33, C:0.10, G:0.21, T:0.36
Consensus pattern (20 bp):
TGAATATGATTAAGCTTGGC
Found at i:72808066 original size:43 final size:43
Alignment explanation
Indices: 72808018--72808162 Score: 161
Period size: 43 Copynumber: 3.4 Consensus size: 43
72808008 AGCTCGTACA
*
72808018 ATGCCAACATCCCAGACATGGTCTTACATGTAATCAAATATCG
1 ATGCCAACATCCCAGACACGGTCTTACATGTAATCAAATATCG
* * * *
72808061 ATGCC-ACTATCCCAGACAGGGTCTTACACGAAATCATATA-CG
1 ATGCCAAC-ATCCCAGACACGGTCTTACATGTAATCAAATATCG
** *
72808103 ATGCCAATGTCCCAGACACGGTCTTAAATGTAAATCACAA-ATCG
1 ATGCCAACATCCCAGACACGGTCTTACATGT-AATCA-AATATCG
*
72808147 ATGCCAACGTCCCAGA
1 ATGCCAACATCCCAGA
72808163 TGGGGTCTTA
Statistics
Matches: 85, Mismatches: 12, Indels: 9
0.80 0.11 0.08
Matches are distributed among these distances:
42 27 0.32
43 40 0.47
44 18 0.21
ACGTcount: A:0.34, C:0.28, G:0.16, T:0.22
Consensus pattern (43 bp):
ATGCCAACATCCCAGACACGGTCTTACATGTAATCAAATATCG
Found at i:72808171 original size:86 final size:85
Alignment explanation
Indices: 72808018--72808175 Score: 212
Period size: 86 Copynumber: 1.8 Consensus size: 85
72808008 AGCTCGTACA
* *
72808018 ATGCCAACATCCCAGACATGGTCTTACATGTAATCAAATATCGATGCCACTATCCCAGACAGGGT
1 ATGCCAACATCCCAGACACGGTCTTAAATGTAATCAAATATCGATGCCACTATCCCAGACAGGGT
72808083 CTTACACGAAATCATATACG
66 CTTACACGAAATCATATACG
** * **
72808103 ATGCCAATGTCCCAGACACGGTCTTAAATGTAAATCACAA-ATCGATGCCAAC-GTCCCAGATGG
1 ATGCCAACATCCCAGACACGGTCTTAAATGT-AATCA-AATATCGATGCC-ACTATCCCAGACAG
72808166 GGTCTTACAC
63 GGTCTTACAC
72808176 AATAACACAT
Statistics
Matches: 63, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
85 27 0.43
86 32 0.51
87 4 0.06
ACGTcount: A:0.33, C:0.27, G:0.17, T:0.23
Consensus pattern (85 bp):
ATGCCAACATCCCAGACACGGTCTTAAATGTAATCAAATATCGATGCCACTATCCCAGACAGGGT
CTTACACGAAATCATATACG
Found at i:72815393 original size:40 final size:40
Alignment explanation
Indices: 72815342--72815601 Score: 311
Period size: 40 Copynumber: 6.7 Consensus size: 40
72815332 TTGAATGCTG
* * * *
72815342 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAG-TGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTG-TTAAA
*
72815382 TCCGGATTAAGT-CCGAAGGCA-TTGTGCGA---GTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTGTTAAA
*
72815417 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTGTTAAA
* *
72815457 TCCGGGTTAAGTCCCGAAGGCATTCGTACGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTGTTAAA
72815497 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTGTTAAA
* * **
72815537 TCCGGGTTATGTCCCGAAGGCA-TTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTGTTAAA
* * *
72815576 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
72815602 AACGAGGAGC
Statistics
Matches: 197, Mismatches: 16, Indels: 14
0.87 0.07 0.06
Matches are distributed among these distances:
35 14 0.07
36 10 0.05
37 7 0.04
38 1 0.01
39 48 0.24
40 117 0.59
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.28
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTGTTAAA
Found at i:72823083 original size:39 final size:39
Alignment explanation
Indices: 72822961--72823217 Score: 290
Period size: 39 Copynumber: 6.6 Consensus size: 39
72822951 TTGAATGCTG
* * * * * *
72822961 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTATTAAA
* *
72823001 TCCGGATTAAGAT-CCGAAGGCTTTGTGCGAG---TTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTGTGCGAGTTATTAAA
72823037 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTATTAAA
*
72823076 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTATTAAA
* *
72823116 TCCGGGTTAAGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTATTAAA
* * *
72823155 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTATTAAA
* * *
72823194 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
72823218 TGAACGAGGA
Statistics
Matches: 198, Mismatches: 13, Indels: 13
0.88 0.06 0.06
Matches are distributed among these distances:
35 1 0.01
36 23 0.12
37 7 0.04
39 113 0.57
40 53 0.27
41 1 0.01
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTATTAAA
Found at i:72823132 original size:79 final size:78
Alignment explanation
Indices: 72822961--72823217 Score: 290
Period size: 79 Copynumber: 3.3 Consensus size: 78
72822951 TTGAATGCTG
* * * * * * * *
72822961 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATATCCGGATTAAGAT-CCGAAGGCTTT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATT
72823025 GTGCGA---GTTAAA
64 GTGCGAGTTGTTAAA
*
72823037 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATT-
72823101 GTGCGAGTTGTTAAA
64 GTGCGAGTTGTTAAA
* *
72823116 TCCGGGTTAAGTCCCGAAGGCATTGTGTGAGTTACTAAATCCGGGTTATGTCCCGAAGGCATTGT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTGT
* **
72823181 GTGAGTTACTAAA
66 GCGAGTTGTTAAA
* * *
72823194 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
72823218 TGAACGAGGA
Statistics
Matches: 157, Mismatches: 17, Indels: 12
0.84 0.09 0.06
Matches are distributed among these distances:
74 1 0.01
75 23 0.15
76 31 0.20
77 4 0.03
78 41 0.26
79 57 0.36
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (78 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTGT
GCGAGTTGTTAAA
Found at i:72823211 original size:118 final size:115
Alignment explanation
Indices: 72822962--72823217 Score: 304
Period size: 118 Copynumber: 2.2 Consensus size: 115
72822952 TGAATGCTGT
* * * * *
72822962 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAG-TGAATATATCCGGATTAAGATCCGAAGGCTTT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGC-GAGTTG-TTAAATCCGGATTAAGATCCGAAGGCATT
* *
72823025 GTGCGAGTTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTTTAAAT
64 GTGCGAGTTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTCTAAAA
* *
72823077 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAG-TCCCGAAGGCATTG
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGATTAAGAT-CCGAAGGCATTG
* * *
72823141 TGTGAGTTACTAAATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAA
65 TGCGAG-T--TAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-CTAAAA
*
72823195 CCGGGCTATGTCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATT
72823218 TGAACGAGGA
Statistics
Matches: 120, Mismatches: 14, Indels: 11
0.83 0.10 0.08
Matches are distributed among these distances:
114 1 0.01
115 50 0.42
116 9 0.08
117 8 0.07
118 52 0.43
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.27
Consensus pattern (115 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGATTAAGATCCGAAGGCATTGT
GCGAGTTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTCTAAAA
Found at i:72823237 original size:118 final size:115
Alignment explanation
Indices: 72822997--72823252 Score: 293
Period size: 118 Copynumber: 2.2 Consensus size: 115
72822987 GCTAAGTGAA
* *
72822997 TATATCCGGATTAAGAT-CCGAAGGCTTTGTGCGAGTTAAATCCGGGTTAAGTCCCGAAGGCATT
1 TATATCCGGGTTAAG-TCCCGAAGGCATTGTGCGAGTTAAATCCGGGTTAAGTCCCGAAGGCATT
* * * ** ** *
72823061 CGTGCGAGTTTTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGT
65 CGTGCGAGTTCTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGC
* * *
72823112 TAAATCCGGGTTAAGTCCCGAAGGCATTGTGTGAGTTACTAAATCCGGGTTATGTCCCGAAGGCA
1 TATATCCGGGTTAAGTCCCGAAGGCATTGTGCGAG-T--TAAATCCGGGTTAAGTCCCGAAGGCA
* * *
72823177 TT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTTGAACGAGGAGC
63 TTCGTGCGAGTT-CTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGC
*
72823230 TATATCC-GGTTAAATCCCGAAGG
1 TATATCCGGGTTAAGTCCCGAAGG
72823253 TACGTGATTT
Statistics
Matches: 118, Mismatches: 18, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
114 1 0.01
115 29 0.25
116 1 0.01
117 23 0.19
118 64 0.54
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (115 bp):
TATATCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTAAATCCGGGTTAAGTCCCGAAGGCATTC
GTGCGAGTTCTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGC
Found at i:72823241 original size:78 final size:79
Alignment explanation
Indices: 72822962--72823252 Score: 269
Period size: 79 Copynumber: 3.7 Consensus size: 79
72822952 TGAATGCTGT
* * * * * *
72822962 CCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATATCCGGATTAAGAT-CCGAAGGC-TTT
1 CCGGGCTAAGTCCCGAAGGCATTGTGC-GAGTGACTAAATCCGGGTTAAG-TCCCGAAGGCATTC
*
72823025 GTGCGAG-T--TAAAT
64 GTGCGAGTTACTAAAA
* **
72823038 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGT-TTTAAATCCGGGTTAAGTCCCGAAGGCATTCG
1 CCGGGCTAAGTCCCGAAGGCATT-GTGCGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTCG
** *
72823102 TGCGAGTTGTTAAAT
65 TGCGAGTTACTAAAA
* * * *
72823117 CCGGGTTAAGTCCCGAAGGCATTGTGTGAGTTACTAAATCCGGGTTATGTCCCGAAGGCATT-GT
1 CCGGGCTAAGTCCCGAAGGCATTGTGCGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTCGT
*
72823181 GTGAGTTACTAAAA
66 GCGAGTTACTAAAA
* * *
72823195 CCGGGCTATGTCCCGAAGGCATT-TGAACGAG-GAGCTATATCC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTGTG--CGAGTGA-CTAAATCCGGGTTAAGTCCCGAAGG
72823253 TACGTGATTT
Statistics
Matches: 182, Mismatches: 23, Indels: 18
0.82 0.10 0.08
Matches are distributed among these distances:
74 1 0.01
75 21 0.12
76 33 0.18
77 7 0.04
78 55 0.30
79 65 0.36
ACGTcount: A:0.25, C:0.20, G:0.29, T:0.26
Consensus pattern (79 bp):
CCGGGCTAAGTCCCGAAGGCATTGTGCGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTCGT
GCGAGTTACTAAAA
Found at i:72839906 original size:38 final size:38
Alignment explanation
Indices: 72839824--72840012 Score: 220
Period size: 38 Copynumber: 4.9 Consensus size: 38
72839814 AAACACAACA
* * * * *
72839824 CCAGCACGAAGCCTACGGGACTTTAAACTCAGATATAATA
1 CCAGCACTAAGCCTGCGGGA-TTT-AACCCGGATATAATT
*
72839864 CCAGCACTAGGCCTGCGGGATTTAACCCGGATATAATT
1 CCAGCACTAAGCCTGCGGGATTTAACCCGGATATAATT
* *
72839902 CCAGCACGAAGCTTGCGGGATTTAACCCGGATAT-ATT
1 CCAGCACTAAGCCTGCGGGATTTAACCCGGATATAATT
*
72839939 ACCAGCACAAAGCCTGCGGGATTTAACCCGGATATAATT
1 -CCAGCACTAAGCCTGCGGGATTTAACCCGGATATAATT
*
72839978 CCAGCA-TATAGCCTGCGGGCCTTTAAGCCCGGATA
1 CCAGCACTA-AGCCTGCGGG-ATTTAA-CCCGGATA
72840013 CAATCTCAGC
Statistics
Matches: 131, Mismatches: 13, Indels: 10
0.85 0.08 0.06
Matches are distributed among these distances:
37 4 0.03
38 91 0.69
39 11 0.08
40 25 0.19
ACGTcount: A:0.30, C:0.26, G:0.22, T:0.22
Consensus pattern (38 bp):
CCAGCACTAAGCCTGCGGGATTTAACCCGGATATAATT
Found at i:72839956 original size:76 final size:78
Alignment explanation
Indices: 72839824--72840026 Score: 243
Period size: 76 Copynumber: 2.6 Consensus size: 78
72839814 AAACACAACA
* * *
72839824 CCAGCACGAAGCCTACGGGACTTTAAACTCAGATATAATACCAGCACTAGGCCTGCGGGATTTAA
1 CCAGCACGAAGCCTACGGGACTTTAAACCCAGATATAATACCAGCACAAAGCCTGCGGGATTTAA
72839889 CCCGGATATAATT
66 CCCGGATATAATT
* * * *
72839902 CCAGCACGAAGCTTGCGGGA-TTT-AACCCGGATATATTACCAGCACAAAGCCTGCGGGATTTAA
1 CCAGCACGAAGCCTACGGGACTTTAAACCCAGATATAATACCAGCACAAAGCCTGCGGGATTTAA
72839965 CCCGGATATAATT
66 CCCGGATATAATT
* * * * * *
72839978 CCAGCA-TATAGCCTGCGGGCCTTTAAGCCCGGATACAAT-CTCAGCACAA
1 CCAGCACGA-AGCCTACGGGACTTTAAACCCAGATATAATAC-CAGCACAA
72840027 TTTATTTTAT
Statistics
Matches: 108, Mismatches: 13, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
75 1 0.01
76 63 0.58
77 7 0.06
78 37 0.34
ACGTcount: A:0.31, C:0.27, G:0.21, T:0.21
Consensus pattern (78 bp):
CCAGCACGAAGCCTACGGGACTTTAAACCCAGATATAATACCAGCACAAAGCCTGCGGGATTTAA
CCCGGATATAATT
Found at i:72844348 original size:27 final size:27
Alignment explanation
Indices: 72844317--72844432 Score: 162
Period size: 27 Copynumber: 4.3 Consensus size: 27
72844307 CCCCGATTCA
*
72844317 TAAAATGACCGTAACACCCCTGTAGGG
1 TAAAATGACCGTAATACCCCTGTAGGG
*
72844344 TAAAATGACCGTAATACCTCTGTAGGG
1 TAAAATGACCGTAATACCCCTGTAGGG
*
72844371 TAAAATGACCGTAAT-GCCCTGTAGGG
1 TAAAATGACCGTAATACCCCTGTAGGG
* * * *
72844397 TACAATGACCGTAATATCCATGTATGG
1 TAAAATGACCGTAATACCCCTGTAGGG
72844424 TAAAATGAC
1 TAAAATGAC
72844433 GATTATGCCC
Statistics
Matches: 79, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
26 23 0.29
27 56 0.71
ACGTcount: A:0.34, C:0.20, G:0.22, T:0.24
Consensus pattern (27 bp):
TAAAATGACCGTAATACCCCTGTAGGG
Found at i:72844404 original size:53 final size:54
Alignment explanation
Indices: 72844317--72844432 Score: 164
Period size: 53 Copynumber: 2.2 Consensus size: 54
72844307 CCCCGATTCA
*
72844317 TAAAATGACCGTAACACCCCTGTAGGGTAAAATGACCGTAATA-CCTCTGTAGGG
1 TAAAATGACCGTAACACCCCTGTAGGGTAAAATGACCGTAATATCC-ATGTAGGG
** * *
72844371 TAAAATGACCGTAA-TGCCCTGTAGGGTACAATGACCGTAATATCCATGTATGG
1 TAAAATGACCGTAACACCCCTGTAGGGTAAAATGACCGTAATATCCATGTAGGG
72844424 TAAAATGAC
1 TAAAATGAC
72844433 GATTATGCCC
Statistics
Matches: 56, Mismatches: 5, Indels: 3
0.88 0.08 0.05
Matches are distributed among these distances:
53 40 0.71
54 16 0.29
ACGTcount: A:0.34, C:0.20, G:0.22, T:0.24
Consensus pattern (54 bp):
TAAAATGACCGTAACACCCCTGTAGGGTAAAATGACCGTAATATCCATGTAGGG
Found at i:72844860 original size:28 final size:27
Alignment explanation
Indices: 72844820--72844878 Score: 66
Period size: 28 Copynumber: 2.1 Consensus size: 27
72844810 ACTGTATTGT
*
72844820 TACTGCATTGGGCTTA-GGCCCACACTG
1 TACTGCATAGGGC-TAGGGCCCACACTG
* *
72844847 CTACTGTATAGGGCTAGGGCCCAGACTG
1 -TACTGCATAGGGCTAGGGCCCACACTG
72844875 TACT
1 TACT
72844879 AATACCGAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
27 6 0.22
28 21 0.78
ACGTcount: A:0.20, C:0.27, G:0.27, T:0.25
Consensus pattern (27 bp):
TACTGCATAGGGCTAGGGCCCACACTG
Found at i:72844902 original size:33 final size:33
Alignment explanation
Indices: 72844865--72844941 Score: 118
Period size: 33 Copynumber: 2.3 Consensus size: 33
72844855 TAGGGCTAGG
72844865 GCCCAGACTGTACTAATACCGAATAGGGCTTAA
1 GCCCAGACTGTACTAATACCGAATAGGGCTTAA
* * * *
72844898 GCCCAGATTGTACTGATACTGAATAGGGCTTAG
1 GCCCAGACTGTACTAATACCGAATAGGGCTTAA
72844931 GCCCAGACTGT
1 GCCCAGACTGT
72844942 GTTATTCACT
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 39 1.00
ACGTcount: A:0.29, C:0.23, G:0.25, T:0.23
Consensus pattern (33 bp):
GCCCAGACTGTACTAATACCGAATAGGGCTTAA
Found at i:72848447 original size:27 final size:27
Alignment explanation
Indices: 72848416--72848593 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
72848406 TAAATTGTAC
72848416 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
72848443 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
72848469 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
72848497 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
72848525 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
72848552 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
72848579 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
72848594 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:72848530 original size:82 final size:81
Alignment explanation
Indices: 72848417--72848572 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
72848407 AAATTGTACA
* *
72848417 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
72848481 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
72848498 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
72848563 TGCGAGTTGA
65 TGCGAATTGA
72848573 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:72848584 original size:82 final size:81
Alignment explanation
Indices: 72848413--72848593 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
72848403 GATTAAATTG
* *
72848413 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
72848478 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
72848494 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
72848558 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
72848576 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
72848594 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:72856509 original size:27 final size:27
Alignment explanation
Indices: 72856478--72856652 Score: 169
Period size: 27 Copynumber: 6.6 Consensus size: 27
72856468 TAAATTGTGC
72856478 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
72856505 TGCACTAAGTGTGCGAAATGA-AATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
72856530 ATGCACTAAGTGTGCGA-ATGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
72856557 GGCACTAAGT-TGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* * *
72856584 AGCACTAAGTGTGAGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
72856611 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
72856638 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
72856653 GACTCATATA
Statistics
Matches: 123, Mismatches: 19, Indels: 12
0.80 0.12 0.08
Matches are distributed among these distances:
25 9 0.07
26 30 0.24
27 80 0.65
28 4 0.03
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:72856541 original size:26 final size:27
Alignment explanation
Indices: 72856479--72856571 Score: 102
Period size: 26 Copynumber: 3.6 Consensus size: 27
72856469 AAATTGTGCA
** * *
72856479 GCACTAAGTGTGCGATTTGACTATGTT
1 GCACTAAGTGTGCGAAATGACAATGAT
72856506 GCACTAAGTGTGCGAAATGA-AATGAT
1 GCACTAAGTGTGCGAAATGACAATGAT
* **
72856532 GCACTAAGTGTGCG-AATGACCATGCG
1 GCACTAAGTGTGCGAAATGACAATGAT
72856558 GCACTAAGT-TGCGA
1 GCACTAAGTGTGCGA
72856572 GTTTGACTAT
Statistics
Matches: 57, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
25 9 0.16
26 30 0.53
27 18 0.32
ACGTcount: A:0.29, C:0.17, G:0.28, T:0.26
Consensus pattern (27 bp):
GCACTAAGTGTGCGAAATGACAATGAT
Found at i:72858269 original size:41 final size:43
Alignment explanation
Indices: 72858211--72858294 Score: 118
Period size: 41 Copynumber: 2.0 Consensus size: 43
72858201 TAACAAACTG
*
72858211 CGAATGCTCTTCGGGACTTAACCCGGCTTAATAACTCGCACAA
1 CGAATGCTCTTCGGGACTTAACCCGACTTAATAACTCGCACAA
* * *
72858254 CGAATGC-C-TCGGGACTTAACCCGATTTAGTATCTCGCACAA
1 CGAATGCTCTTCGGGACTTAACCCGACTTAATAACTCGCACAA
72858295 AAAGGCCAAC
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
41 29 0.78
42 1 0.03
43 7 0.19
ACGTcount: A:0.27, C:0.30, G:0.19, T:0.24
Consensus pattern (43 bp):
CGAATGCTCTTCGGGACTTAACCCGACTTAATAACTCGCACAA
Found at i:72868518 original size:46 final size:45
Alignment explanation
Indices: 72868468--72868638 Score: 188
Period size: 46 Copynumber: 3.7 Consensus size: 45
72868458 TGGTTGAGCA
72868468 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGT-CGAGTTCACTTATGGATGCGAATG
* * * *
72868514 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGT-CGAGTTCACTTATGGATGCGAA-T--G
*
72868559 CATCCGAACTCGTTGAGTTGAGTCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCGAGTTCACTTATGGATGCGAATG
* *
72868606 CCCGAGCTCGTTGAGTTGAGTCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCGAGTTCACTTA
72868639 GGGGCGGGTT
Statistics
Matches: 105, Mismatches: 11, Indels: 19
0.78 0.08 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 34 0.32
46 36 0.34
47 24 0.23
49 3 0.03
50 2 0.02
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCGAGTTCACTTATGGATGCGAATG
Found at i:72868623 original size:92 final size:92
Alignment explanation
Indices: 72868465--72868633 Score: 295
Period size: 92 Copynumber: 1.8 Consensus size: 92
72868455 GGATGGTTGA
* *
72868465 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
72868530 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGT-CGAGTTCGTGAAATGTAACTAG
*
72868558 GCATCCGAACTCGTTGAGTTGAGT-CGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
72868622 TGAGTCGAGTTC
66 TGAGTCGAGTTC
72868634 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
91 7 0.10
92 42 0.58
93 24 0.33
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (92 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCGAGTTCGTGAAATGTAACTAG
Found at i:72876035 original size:46 final size:46
Alignment explanation
Indices: 72875985--72876157 Score: 165
Period size: 46 Copynumber: 3.7 Consensus size: 46
72875975 TGGTTGACCA
*
72875985 TCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
72876031 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* * *
72876076 CATCCGAACTCGTTGAGCTGAGTCCGAGTTCCCTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
72876124 CCCGAGCTCATTGATTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
72876158 GGGGCGGGTT
Statistics
Matches: 101, Mismatches: 17, Indels: 18
0.74 0.12 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 56 0.55
47 28 0.28
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.23, C:0.23, G:0.26, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:72876143 original size:93 final size:93
Alignment explanation
Indices: 72875983--72876152 Score: 268
Period size: 93 Copynumber: 1.8 Consensus size: 93
72875973 GATGGTTGAC
* * * *
72875983 CATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGTT
1 CATCCGAACTCGTTGAGCTGAGTCCAAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGTT
72876048 GAGTCCGAGTTCGTGAAATGTAACTAGG
66 GAGTCCGAGTTCGTGAAATGTAACTAGG
* * * *
72876076 CATCCGAACTCGTTGAGCTGAGTCCGAGTTCCCTTATGGATGCGAACGCCCGAGCTCATTGATTT
1 CATCCGAACTCGTTGAGCTGAGTCCAAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGTT
72876141 GAGTCCGAGTTC
66 GAGTCCGAGTTC
72876153 ACTTAGGGGC
Statistics
Matches: 69, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 69 1.00
ACGTcount: A:0.22, C:0.23, G:0.26, T:0.28
Consensus pattern (93 bp):
CATCCGAACTCGTTGAGCTGAGTCCAAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGTT
GAGTCCGAGTTCGTGAAATGTAACTAGG
Found at i:72882087 original size:43 final size:42
Alignment explanation
Indices: 72881943--72882108 Score: 122
Period size: 43 Copynumber: 3.9 Consensus size: 42
72881933 ATATAGCTCG
* * * * *
72881943 TACAATGCC-ATATCCCAGATATGGTCTTACATGTTATCACA
1 TACAATGCCAATGTCCCAGACATGGTCTTACACGTAATCTCA
* * * * * * *
72881984 TATCGATGCCACTGTCCTAAACAGGGTCTTACACGAAATC-GA
1 TA-CAATGCCAATGTCCCAGACATGGTCTTACACGTAATCTCA
* *
72882026 T-TAATGAGCCAATTTCCCAGACATGGTCTTACACGTAATCTCAA
1 TACAAT--GCCAATGTCCCAGACATGGTCTTACACGTAATCTC-A
* * *
72882070 TACAATGCCAATGTCCCAGATATGGTCCTACATGTAATC
1 TACAATGCCAATGTCCCAGACATGGTCTTACACGTAATC
72882109 ACATCTCGAT
Statistics
Matches: 93, Mismatches: 25, Indels: 12
0.72 0.19 0.09
Matches are distributed among these distances:
40 2 0.02
41 2 0.02
42 35 0.38
43 49 0.53
44 2 0.02
45 3 0.03
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.28
Consensus pattern (42 bp):
TACAATGCCAATGTCCCAGACATGGTCTTACACGTAATCTCA
Found at i:72883223 original size:18 final size:18
Alignment explanation
Indices: 72883200--72883234 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
72883190 ATATTCACAT
*
72883200 TGTAACACCCCTAACCCA
1 TGTAACACCCCAAACCCA
72883218 TGTAACACCCCAAACCC
1 TGTAACACCCCAAACCC
72883235 GGCCCAAACG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.34, C:0.46, G:0.06, T:0.14
Consensus pattern (18 bp):
TGTAACACCCCAAACCCA
Found at i:72884004 original size:14 final size:14
Alignment explanation
Indices: 72883985--72884029 Score: 56
Period size: 14 Copynumber: 3.3 Consensus size: 14
72883975 AACTCATCTT
*
72883985 AGTTTAATTAAATG
1 AGTTTAATTTAATG
*
72883999 AGTTT-ATTTGATG
1 AGTTTAATTTAATG
*
72884012 AATTTAATTTAATG
1 AGTTTAATTTAATG
72884026 AGTT
1 AGTT
72884030 GCTTCTTTAA
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
13 10 0.40
14 15 0.60
ACGTcount: A:0.36, C:0.00, G:0.16, T:0.49
Consensus pattern (14 bp):
AGTTTAATTTAATG
Found at i:72885038 original size:29 final size:29
Alignment explanation
Indices: 72885005--72885064 Score: 102
Period size: 29 Copynumber: 2.1 Consensus size: 29
72884995 ATAACCAAAC
*
72885005 CTACAAAAACTTTATATCCATAAACCCAT
1 CTACAAAAACTTCATATCCATAAACCCAT
*
72885034 CTACATAAACTTCATATCCATAAACCCAT
1 CTACAAAAACTTCATATCCATAAACCCAT
72885063 CT
1 CT
72885065 TTGAATCCTT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.42, C:0.30, G:0.00, T:0.28
Consensus pattern (29 bp):
CTACAAAAACTTCATATCCATAAACCCAT
Found at i:72885057 original size:15 final size:15
Alignment explanation
Indices: 72885011--72885058 Score: 53
Period size: 15 Copynumber: 3.3 Consensus size: 15
72885001 AAACCTACAA
*
72885011 AAACTTTATATCCAT
1 AAACTTCATATCCAT
* * *
72885026 AAAC-CCATCTACAT
1 AAACTTCATATCCAT
72885040 AAACTTCATATCCAT
1 AAACTTCATATCCAT
72885055 AAAC
1 AAAC
72885059 CCATCTTTGA
Statistics
Matches: 25, Mismatches: 7, Indels: 2
0.74 0.21 0.06
Matches are distributed among these distances:
14 10 0.40
15 15 0.60
ACGTcount: A:0.44, C:0.27, G:0.00, T:0.29
Consensus pattern (15 bp):
AAACTTCATATCCAT
Found at i:72886916 original size:15 final size:15
Alignment explanation
Indices: 72886892--72886921 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
72886882 CTAATGTATT
72886892 TTTTGAGGTTTCGGC
1 TTTTGAGGTTTCGGC
*
72886907 TTTTGTGGTTTCGGC
1 TTTTGAGGTTTCGGC
72886922 ACAAGTGTTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.03, C:0.13, G:0.33, T:0.50
Consensus pattern (15 bp):
TTTTGAGGTTTCGGC
Found at i:72895805 original size:95 final size:95
Alignment explanation
Indices: 72895642--72895833 Score: 375
Period size: 95 Copynumber: 2.0 Consensus size: 95
72895632 ACAAGGCCCA
72895642 AAACATCTCTTGGAAGCTACTCGGGACTAACTCGGGTCCTTTAACCAACACTAGGAAAATGAACT
1 AAACATCTCTTGGAAGCTACTCGGGACTAACTCGGGTCCTTTAACCAACACTAGGAAAATGAACT
72895707 TGAAACAAGACACACGCCCGTGTAGACTTG
66 TGAAACAAGACACACGCCCGTGTAGACTTG
72895737 AAACATCTCTTGGAAGCTACTCGGGACTAACTCGGGTCCTTTAACCAACACTAGGAAAATGAACT
1 AAACATCTCTTGGAAGCTACTCGGGACTAACTCGGGTCCTTTAACCAACACTAGGAAAATGAACT
*
72895802 TGAAACAAGACACACGCTCGTGTAGACTTG
66 TGAAACAAGACACACGCCCGTGTAGACTTG
72895832 AA
1 AA
72895834 CATGGTTGTG
Statistics
Matches: 96, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
95 96 1.00
ACGTcount: A:0.34, C:0.24, G:0.20, T:0.21
Consensus pattern (95 bp):
AAACATCTCTTGGAAGCTACTCGGGACTAACTCGGGTCCTTTAACCAACACTAGGAAAATGAACT
TGAAACAAGACACACGCCCGTGTAGACTTG
Found at i:72898206 original size:27 final size:27
Alignment explanation
Indices: 72898176--72898228 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
72898166 TCATACAACC
* *
72898176 CATGTAATAGTAATTTAACATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
**
72898203 CATGTAACAATAATTTGCCATTCAAT
1 CATGTAACAATAATTTAACATTCAAT
72898229 CTCACATGAC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.40, C:0.15, G:0.08, T:0.38
Consensus pattern (27 bp):
CATGTAACAATAATTTAACATTCAATT
Found at i:72900308 original size:50 final size:48
Alignment explanation
Indices: 72900144--72900371 Score: 177
Period size: 47 Copynumber: 4.8 Consensus size: 48
72900134 AGGGTATAAT
* *
72900144 GCCGATGCCATGTCCCAGACATGATCTTACACTGGCTCATCCATCAA-GT-
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTC-T-CA-CAATGTG
* * * * *
72900193 --CGATGCCATGTCCCAAACATGGTTTTACA-TTGACTATCGA-AATCGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAG-CTCTC-ACAAT-GTG
** * * *
72900240 GTTGACGCCATGTTCCAGACATGGTCTTATACTAGCTCTCACATATCCGT-
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACA-AT--GTG
* *
72900290 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACAATGTG
*
72900338 GCTGATG-CATGTCCCAGACAT-GTCTTACACTAGC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGC
72900372 ACACAAATAA
Statistics
Matches: 143, Mismatches: 24, Indels: 27
0.74 0.12 0.14
Matches are distributed among these distances:
44 2 0.01
45 1 0.01
46 17 0.12
47 44 0.31
48 7 0.05
49 30 0.21
50 40 0.28
51 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.28
Consensus pattern (48 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACAATGTG
Found at i:72901480 original size:27 final size:26
Alignment explanation
Indices: 72901433--72901492 Score: 68
Period size: 27 Copynumber: 2.3 Consensus size: 26
72901423 GCGAGGCTGC
72901433 CAGATATTGTGACAAAGCCACCAGATA
1 CAGATATTGTGACAAAGCCACCAGA-A
* * *
72901460 CAGATATTGTGGC-TAGACCACTAGAA
1 CAGATATTGTGACAAAG-CCACCAGAA
72901486 CAGATAT
1 CAGATAT
72901493 ATATATATGT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
26 10 0.34
27 19 0.66
ACGTcount: A:0.38, C:0.20, G:0.20, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACAAAGCCACCAGAA
Found at i:72901582 original size:27 final size:26
Alignment explanation
Indices: 72901534--72901585 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
72901524 GCGAGGCTGC
*
72901534 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
72901560 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
72901586 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:72912180 original size:138 final size:138
Alignment explanation
Indices: 72911930--72912481 Score: 753
Period size: 138 Copynumber: 4.1 Consensus size: 138
72911920 TAAAGAATAT
* * * *
72911930 ATATAATTAACATTTGAATTTTATTCATACAAAATATTAATTGTATATA-TTTACAAAATTTATT
1 ATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCAAATTTATT
* * *
72911994 AATATGAACAATTATATTAATTAATTTCGGTTAAAATATAAAACACATGAAAATTAATATTCTTT
66 AATATAAACAATTATATTAATTAATTTCGATCAAAATATAAAACACATGAAAATTAATATTCTTT
72912059 TGGAAAGA
131 TGGAAAGA
* ***
72912067 ATATAATTAATATATGAATTTGATTCAAACAAAATATTAATTGTATATATTTTATTGAATTTATT
1 ATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCAAATTTATT
* * * *
72912132 AATATAAACATTTATATAAATTAATTTCGATCAAAATATAAAAGACATGGAAATTAATATTCTTT
66 AATATAAACAATTATATTAATTAATTTCGATCAAAATATAAAACACATGAAAATTAATATTCTTT
72912197 TGGAAAGA
131 TGGAAAGA
* *
72912205 ATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATCTTACCGAATTTATT
1 ATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCAAATTTATT
* * * *
72912270 AGTATAAA-AAGTATATTAATTAATTTTGATCAAAATATAAAACACATGGAAATTAATATTCTTT
66 AATATAAACAATTATATTAATTAATTTCGATCAAAATATAAAACACATGAAAATTAATATTCTTT
*
72912334 TGGAAA-T
131 TGGAAAGA
* *
72912341 A-AT-A-TAA-ATATGAATTTGATTCATACAAATTATTAATTGTATATATTTTATCAAATTTATT
1 ATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCAAATTTATT
* * * * *
72912402 AATATAAACAGTTATATTAATTAATTTC-AGTCAAAATATAAAATATATAAAAATTAATGTTC-T
66 AATATAAACAATTATATTAATTAATTTCGA-TCAAAATATAAAACACATGAAAATTAATATTCTT
* *
72912465 TTGAAAAGT
130 TTGGAAAGA
72912474 ATATAATT
1 ATATAATT
72912482 TGTTTTTCTA
Statistics
Matches: 369, Mismatches: 39, Indels: 15
0.87 0.09 0.04
Matches are distributed among these distances:
132 65 0.18
133 48 0.13
134 3 0.01
135 3 0.01
136 2 0.01
137 102 0.28
138 146 0.40
ACGTcount: A:0.46, C:0.06, G:0.07, T:0.41
Consensus pattern (138 bp):
ATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCAAATTTATT
AATATAAACAATTATATTAATTAATTTCGATCAAAATATAAAACACATGAAAATTAATATTCTTT
TGGAAAGA
Found at i:72912691 original size:134 final size:138
Alignment explanation
Indices: 72912519--72912814 Score: 374
Period size: 134 Copynumber: 2.2 Consensus size: 138
72912509 GAATAATCCT
72912519 ATATTCTTTTGGAAAGAATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATAT
1 ATATTCTTTTGGAAAGAATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATAT
* *
72912584 ATCTTACCGAATTTATTAGTATAAAAAAAG-TATATTAATTAATTT-TGATCAAAATATAAAACA
66 ATCTTACCAAATTTATTA--ATAAAAAAAGTTATATTAATTAATTTCAG-TCAAAATATAAAACA
72912647 CATGGAAATTA
128 CATGGAAATTA
* *
72912658 ATATTCTTTTGGAAA-TA-AT-A-TAA-ATATGAATTTGATTCATACAAATTATTAATTGTATAT
1 ATATTCTTTTGGAAAGAATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATAT
* * * * * *
72912718 ATTTTATCAAATTTATTAATATAAACAGTTATATTAATTAATTTCAGTCAAAATATAAAAGATAT
66 ATCTTACCAAATTTATTAATAAAAAAAGTTATATTAATTAATTTCAGTCAAAATATAAAACACAT
**
72912783 AAAAATTA
131 GGAAATTA
* * *
72912791 ATGTTC-TTTGAAAAGTATATAATT
1 ATATTCTTTTGGAAAGAATATAATT
72912815 TGTTTTTCTA
Statistics
Matches: 137, Mismatches: 14, Indels: 15
0.83 0.08 0.09
Matches are distributed among these distances:
132 15 0.11
133 44 0.32
134 54 0.39
135 4 0.03
136 2 0.01
137 2 0.01
138 1 0.01
139 15 0.11
ACGTcount: A:0.46, C:0.06, G:0.08, T:0.41
Consensus pattern (138 bp):
ATATTCTTTTGGAAAGAATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATAT
ATCTTACCAAATTTATTAATAAAAAAAGTTATATTAATTAATTTCAGTCAAAATATAAAACACAT
GGAAATTA
Found at i:72912792 original size:333 final size:331
Alignment explanation
Indices: 72912188--72912876 Score: 1351
Period size: 333 Copynumber: 2.1 Consensus size: 331
72912178 ATGGAAATTA
72912188 ATATTCTTTTGGAAAGAATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATAT
1 ATATTCTTTTGGAAAGAATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATAT
72912253 ATCTTACCGAATTTATTAGTATAAAAAGTATATTAATTAATTTTGATCAAAATATAAAACACATG
66 ATCTTACCGAATTTATTAGTATAAAAAGTATATTAATTAATTTTGATCAAAATATAAAACACATG
72912318 GAAATTAATATTCTTTTGGAAATAATATAAATATGAATTTGATTCATACAAATTATTAATTGTAT
131 GAAATTAATATTCTTTTGGAAATAATATAAATATGAATTTGATTCATACAAATTATTAATTGTAT
*
72912383 ATATTTTATCAAATTTATTAATATAAACAGTTATATTAATTAATTTCAGTCAAAATATAAAATAT
196 ATATTTTATCAAATTTATTAATATAAACAGTTATATTAATTAATTTCAGTCAAAATATAAAAGAT
72912448 ATAAAAATTAATGTTCTTTGAAAAGTATATAATTTGTTTTTCTAACTTTCCATTAATAGGGGAAT
261 ATAAAAATTAATGTTCTTTGAAAAGTATATAATTTGTTTTTCTAACTTTCCATTAATAGGGGAAT
72912513 AATCCT
326 AATCCT
72912519 ATATTCTTTTGGAAAGAATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATAT
1 ATATTCTTTTGGAAAGAATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATAT
72912584 ATCTTACCGAATTTATTAGTATAAAAAAAGTATATTAATTAATTTTGATCAAAATATAAAACACA
66 ATCTTACCGAATTTATTAGTAT--AAAAAGTATATTAATTAATTTTGATCAAAATATAAAACACA
72912649 TGGAAATTAATATTCTTTTGGAAATAATATAAATATGAATTTGATTCATACAAATTATTAATTGT
129 TGGAAATTAATATTCTTTTGGAAATAATATAAATATGAATTTGATTCATACAAATTATTAATTGT
72912714 ATATATTTTATCAAATTTATTAATATAAACAGTTATATTAATTAATTTCAGTCAAAATATAAAAG
194 ATATATTTTATCAAATTTATTAATATAAACAGTTATATTAATTAATTTCAGTCAAAATATAAAAG
72912779 ATATAAAAATTAATGTTCTTTGAAAAGTATATAATTTGTTTTTCTAACTTTCCATTAATAGGGGA
259 ATATAAAAATTAATGTTCTTTGAAAAGTATATAATTTGTTTTTCTAACTTTCCATTAATAGGGGA
72912844 ATAATCCT
324 ATAATCCT
72912852 ATATTCTTTTGGAAAGAATATAATT
1 ATATTCTTTTGGAAAGAATATAATT
72912877 CATTTTTCTA
Statistics
Matches: 355, Mismatches: 1, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
331 87 0.25
333 268 0.75
ACGTcount: A:0.43, C:0.07, G:0.08, T:0.42
Consensus pattern (331 bp):
ATATTCTTTTGGAAAGAATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATAT
ATCTTACCGAATTTATTAGTATAAAAAGTATATTAATTAATTTTGATCAAAATATAAAACACATG
GAAATTAATATTCTTTTGGAAATAATATAAATATGAATTTGATTCATACAAATTATTAATTGTAT
ATATTTTATCAAATTTATTAATATAAACAGTTATATTAATTAATTTCAGTCAAAATATAAAAGAT
ATAAAAATTAATGTTCTTTGAAAAGTATATAATTTGTTTTTCTAACTTTCCATTAATAGGGGAAT
AATCCT
Found at i:72912958 original size:75 final size:75
Alignment explanation
Indices: 72912832--72912987 Score: 267
Period size: 75 Copynumber: 2.1 Consensus size: 75
72912822 CTAACTTTCC
* *
72912832 ATTAATAGGGGAATAATCCTATATTCTTTTGGAAAGAATATAATTCATTTTTCTAACTTTTCATT
1 ATTAATAAGGGAATAATCATATATTCTTTTGGAAAGAATATAATTCATTTTTCTAACTTTTCATT
72912897 TGCCTTCTCT
66 TGCCTTCTCT
* * *
72912907 ATTAATAAGGGAATAATCATATTTTTTTTTGGAAAGAATATAATTCCTTTTTCTAACTTTTCATT
1 ATTAATAAGGGAATAATCATATATTCTTTTGGAAAGAATATAATTCATTTTTCTAACTTTTCATT
72912972 TGCCTTCTCT
66 TGCCTTCTCT
72912982 ATTAAT
1 ATTAAT
72912988 TAGAGAATCT
Statistics
Matches: 76, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
75 76 1.00
ACGTcount: A:0.30, C:0.13, G:0.10, T:0.47
Consensus pattern (75 bp):
ATTAATAAGGGAATAATCATATATTCTTTTGGAAAGAATATAATTCATTTTTCTAACTTTTCATT
TGCCTTCTCT
Found at i:72916437 original size:28 final size:28
Alignment explanation
Indices: 72916374--72916496 Score: 176
Period size: 28 Copynumber: 4.4 Consensus size: 28
72916364 ATATTAAGTC
*
72916374 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
72916401 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
72916429 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
72916457 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
72916486 CGCACACTTAG
1 CGCACACTTAG
72916497 CGCCAATCTC
Statistics
Matches: 87, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
27 22 0.25
28 49 0.56
29 16 0.18
ACGTcount: A:0.33, C:0.28, G:0.12, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:72921266 original size:38 final size:39
Alignment explanation
Indices: 72921224--72921408 Score: 135
Period size: 38 Copynumber: 4.9 Consensus size: 39
72921214 GCTAATGACC
72921224 AATCCGGACTAAGATCCGAAGGCA-TTGTGCGAGATACT
1 AATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACT
* *
72921262 AATCCGGACTGAAGCATTC--A-GCATTTGTGCG-GATACC
1 AATCCGGACT-AAG-ATCCGAAGGCATTTGTGCGAGATACT
* *
72921299 AA-ACGGACTAA-ATCCGAAGGCAATTGTGCCGAGATACT
1 AATCCGGACTAAGATCCGAAGGCATTTGTG-CGAGATACT
* *
72921337 ATTCCCGG-CT-AG-TCCGAAGGGCATTTGTGCGAGTTA--
1 AAT-CCGGACTAAGATCCGAA-GGCATTTGTGCGAGATACT
**
72921373 AAGTCCGGGTTAA-AGTCCGAAGGCATTTGTTGCGAG
1 AA-TCCGGACTAAGA-TCCGAAGGCATTTG-TGCGAG
72921409 TCTACTTTAC
Statistics
Matches: 117, Mismatches: 12, Indels: 35
0.71 0.07 0.21
Matches are distributed among these distances:
33 3 0.03
35 3 0.03
36 19 0.16
37 14 0.12
38 46 0.39
39 26 0.22
40 6 0.05
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.23
Consensus pattern (39 bp):
AATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACT
Found at i:72925538 original size:78 final size:77
Alignment explanation
Indices: 72925384--72925557 Score: 260
Period size: 78 Copynumber: 2.2 Consensus size: 77
72925374 GGATGAAATC
*
72925384 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATACCGGGCTAAGTCCCGAAGGCATTTGTG
1 CGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTATACCGGGCTAAGTCCCGAAGGCATTTGAG
*
72925449 CGAGTTACTATAA
65 CAAGTTACTATAA
72925462 CGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGAG
1 CGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAT-ACCGGGCTAAGTCCCGAAGGCATTTGAG
*
72925527 CAAG-TAGCTATAT
65 CAAGTTA-CTATAA
* *
72925540 CCGGCTAAATTCCGAAGG
1 CGGGCT-AAGTCCGAAGG
72925558 TACTTGGTTT
Statistics
Matches: 88, Mismatches: 5, Indels: 5
0.90 0.05 0.05
Matches are distributed among these distances:
77 28 0.32
78 50 0.57
79 10 0.11
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (77 bp):
CGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTATACCGGGCTAAGTCCCGAAGGCATTTGAGC
AAGTTACTATAA
Found at i:72925557 original size:39 final size:40
Alignment explanation
Indices: 72925383--72925524 Score: 263
Period size: 39 Copynumber: 3.6 Consensus size: 40
72925373 CGGATGAAAT
72925383 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT-A
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
72925422 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
72925462 -CGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
72925500 CCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
72925525 AGCAAGTAGC
Statistics
Matches: 100, Mismatches: 0, Indels: 5
0.95 0.00 0.05
Matches are distributed among these distances:
38 28 0.28
39 58 0.58
40 14 0.14
ACGTcount: A:0.24, C:0.23, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:72933454 original size:40 final size:40
Alignment explanation
Indices: 72933399--72933547 Score: 262
Period size: 40 Copynumber: 3.7 Consensus size: 40
72933389 TATTCGGATG
72933399 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
72933439 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
72933479 ATAACCAGGCTAAGTCCCGAAGACATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
72933519 ATAACCGAGCTATGTCCCGAAGGCATTTG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTG
72933548 AGCAAGTAGC
Statistics
Matches: 103, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 103 1.00
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:72933561 original size:80 final size:79
Alignment explanation
Indices: 72933399--72933570 Score: 256
Period size: 80 Copynumber: 2.2 Consensus size: 79
72933389 TATTCGGATG
* *
72933399 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCA
1 ATAACC-GGCTAAGTCCCGAAGACATTTGTGCGAGTTACTATAACCGAGCTAAGTCCCGAAGGCA
* *
72933464 TTTGTGCGAGTTACT
65 TTTGAGCAAGTTACT
*
72933479 ATAACCAGGCTAAGTCCCGAAGACATTTGTGCGAGTTACTATAACCGAGCTATGTCCCGAAGGCA
1 ATAACC-GGCTAAGTCCCGAAGACATTTGTGCGAGTTACTATAACCGAGCTAAGTCCCGAAGGCA
72933544 TTTGAGCAAG-TAGCT
65 TTTGAGCAAGTTA-CT
*
72933559 ATATCCGGCTAA
1 ATAACCGGCTAA
72933571 ATTCCAAAGG
Statistics
Matches: 84, Mismatches: 7, Indels: 3
0.89 0.07 0.03
Matches are distributed among these distances:
79 8 0.10
80 76 0.90
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.24
Consensus pattern (79 bp):
ATAACCGGCTAAGTCCCGAAGACATTTGTGCGAGTTACTATAACCGAGCTAAGTCCCGAAGGCAT
TTGAGCAAGTTACT
Found at i:72945379 original size:13 final size:13
Alignment explanation
Indices: 72945361--72945385 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
72945351 GGGGACACAC
72945361 GCCCGTGTGATCA
1 GCCCGTGTGATCA
72945374 GCCCGTGTGATC
1 GCCCGTGTGATC
72945386 GACACGCCCG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.12, C:0.32, G:0.32, T:0.24
Consensus pattern (13 bp):
GCCCGTGTGATCA
Found at i:72946866 original size:26 final size:26
Alignment explanation
Indices: 72946836--72946922 Score: 120
Period size: 26 Copynumber: 3.3 Consensus size: 26
72946826 ATAGGATTCA
* * * *
72946836 TAATCAGGAAGTTCACAAAGAACTTT
1 TAATCAGGAAGCTCACGAAGAGCCTT
72946862 TAATCAGGAAGCTCACGAAGAGCCTT
1 TAATCAGGAAGCTCACGAAGAGCCTT
* *
72946888 TAAACAGGAAGCTCACGAAGAGCCAT
1 TAATCAGGAAGCTCACGAAGAGCCTT
72946914 TAATCAGGA
1 TAATCAGGA
72946923 GCTTCGGATA
Statistics
Matches: 54, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 54 1.00
ACGTcount: A:0.40, C:0.20, G:0.21, T:0.20
Consensus pattern (26 bp):
TAATCAGGAAGCTCACGAAGAGCCTT
Found at i:72947047 original size:65 final size:65
Alignment explanation
Indices: 72946971--72947152 Score: 199
Period size: 65 Copynumber: 2.8 Consensus size: 65
72946961 ATATCAGGAC
* *
72946971 GCTCACAAAGAGCTGCATTTGTGTCTGCAACATATGAAGGATCACAACCGATCATATAACAAGAA
1 GCTCACAAAGAGCTGCATTTATGTCCGCAACATATGAAGGATCACAACCGATCATATAACAAGAA
* ** * * * * *
72947036 GCTCACAAAGAGTTGTGTTTATGTCCGCAATATATGCAGGGTCACAACCGATCATATAACAGGAC
1 GCTCACAAAGAGCTGCATTTATGTCCGCAACATATGAAGGATCACAACCGATCATATAACAAGAA
* * * * *
72947101 GCTCACAAAGAGTTGCGA--TA-GTCCGCAACACATGTAGGATGACTACCGATCA
1 GCTCACAAAGAGCTGC-ATTTATGTCCGCAACATATGAAGGATCACAACCGATCA
72947153 GGATGCTCGC
Statistics
Matches: 98, Mismatches: 18, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
63 26 0.27
64 2 0.02
65 70 0.71
ACGTcount: A:0.35, C:0.23, G:0.21, T:0.22
Consensus pattern (65 bp):
GCTCACAAAGAGCTGCATTTATGTCCGCAACATATGAAGGATCACAACCGATCATATAACAAGAA
Found at i:72953365 original size:68 final size:67
Alignment explanation
Indices: 72953293--72953442 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
72953283 CATCATGTGT
* * * *
72953293 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
72953355 ATGTAG
62 ATGTAG
** * *
72953361 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
72953426 AG
66 AG
72953428 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
72953443 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:72953398 original size:64 final size:64
Alignment explanation
Indices: 72953317--72953500 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
72953307 AGACATTATG
* *
72953317 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
72953381 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
72953446 AA
63 AA
* * * *
72953448 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
72953501 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:72958056 original size:10 final size:10
Alignment explanation
Indices: 72958020--72958099 Score: 74
Period size: 10 Copynumber: 7.6 Consensus size: 10
72958010 TCCTCCTATC
72958020 CAAATTCTCT
1 CAAATTCTCT
*
72958030 CACATTCT-T
1 CAAATTCTCT
72958039 CCAAAAATTCTCT
1 -C--AAATTCTCT
72958052 CAAATTCTCT
1 CAAATTCTCT
72958062 CAAATTCT-T
1 CAAATTCTCT
72958071 CCAAAAATTCTCT
1 -C--AAATTCTCT
*
72958084 CATATTCTCT
1 CAAATTCTCT
72958094 CAAATT
1 CAAATT
72958100 TTTTCAAAAC
Statistics
Matches: 58, Mismatches: 4, Indels: 16
0.74 0.05 0.21
Matches are distributed among these distances:
9 2 0.03
10 39 0.67
12 15 0.26
13 2 0.03
ACGTcount: A:0.33, C:0.29, G:0.00, T:0.39
Consensus pattern (10 bp):
CAAATTCTCT
Found at i:72958061 original size:32 final size:32
Alignment explanation
Indices: 72958020--72958108 Score: 142
Period size: 32 Copynumber: 2.8 Consensus size: 32
72958010 TCCTCCTATC
*
72958020 CAAATTCTCTCACATTCTTCCAAAAATTCTCT
1 CAAATTCTCTCAAATTCTTCCAAAAATTCTCT
72958052 CAAATTCTCTCAAATTCTTCCAAAAATTCTCT
1 CAAATTCTCTCAAATTCTTCCAAAAATTCTCT
* * *
72958084 CATATTCTCTCAAATTTTTTCAAAA
1 CAAATTCTCTCAAATTCTTCCAAAA
72958109 CTCTCTTTAA
Statistics
Matches: 53, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
32 53 1.00
ACGTcount: A:0.34, C:0.27, G:0.00, T:0.39
Consensus pattern (32 bp):
CAAATTCTCTCAAATTCTTCCAAAAATTCTCT
Found at i:72958097 original size:22 final size:22
Alignment explanation
Indices: 72958043--72958097 Score: 71
Period size: 22 Copynumber: 2.6 Consensus size: 22
72958033 ATTCTTCCAA
72958043 AAATTCTCTC--AAATTCTCTC
1 AAATTCTCTCAAAAATTCTCTC
72958063 AAATTCT-TCCAAAAATTCTCTC
1 AAATTCTCT-CAAAAATTCTCTC
*
72958085 ATATTCTCTCAAA
1 AAATTCTCTCAAA
72958098 TTTTTTCAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
19 1 0.03
20 8 0.27
22 20 0.67
23 1 0.03
ACGTcount: A:0.35, C:0.27, G:0.00, T:0.38
Consensus pattern (22 bp):
AAATTCTCTCAAAAATTCTCTC
Found at i:72958114 original size:21 final size:21
Alignment explanation
Indices: 72958089--72958129 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
72958079 TCTCTCATAT
*
72958089 TCTCTCAAATTTTTTCAAAAC
1 TCTCTCAAATTTTTACAAAAC
**
72958110 TCTCTTTAATTTTTACAAAA
1 TCTCTCAAATTTTTACAAAA
72958130 AAAACTCTAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.34, C:0.20, G:0.00, T:0.46
Consensus pattern (21 bp):
TCTCTCAAATTTTTACAAAAC
Found at i:72958325 original size:47 final size:48
Alignment explanation
Indices: 72958258--72958355 Score: 144
Period size: 49 Copynumber: 2.0 Consensus size: 48
72958248 AGTGATAATT
**
72958258 TTAATATTTCAATAGTATTTAATA-TTTTTTAATTTATGCAATTTTAA
1 TTAATATTTCAATACAATTTAATATTTTTTTAATTTATGCAATTTTAA
* *
72958305 TTAATTTTTCAATACAATTTAATATTTTTTTTCATTTATGCAATTTTAA
1 TTAATATTTCAATACAATTTAATA-TTTTTTTAATTTATGCAATTTTAA
72958354 TT
1 TT
72958356 TTAATTTTAT
Statistics
Matches: 45, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
47 21 0.47
49 24 0.53
ACGTcount: A:0.34, C:0.06, G:0.03, T:0.57
Consensus pattern (48 bp):
TTAATATTTCAATACAATTTAATATTTTTTTAATTTATGCAATTTTAA
Found at i:72959314 original size:7 final size:7
Alignment explanation
Indices: 72959302--72959348 Score: 85
Period size: 7 Copynumber: 6.7 Consensus size: 7
72959292 TAATCGTTTC
72959302 GTATTTA
1 GTATTTA
72959309 GTATTTA
1 GTATTTA
*
72959316 ATATTTA
1 GTATTTA
72959323 GTATTTA
1 GTATTTA
72959330 GTATTTA
1 GTATTTA
72959337 GTATTTA
1 GTATTTA
72959344 GTATT
1 GTATT
72959349 ATGTATACAA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
7 38 1.00
ACGTcount: A:0.30, C:0.00, G:0.13, T:0.57
Consensus pattern (7 bp):
GTATTTA
Found at i:72960007 original size:18 final size:18
Alignment explanation
Indices: 72959966--72960000 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
72959956 GCCAGATGCG
*
72959966 TATCCTAGCCCTTATATA
1 TATCCTAACCCTTATATA
72959984 TATCCTAACCCTTATAT
1 TATCCTAACCCTTATAT
72960001 GTTTCCTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.29, C:0.29, G:0.03, T:0.40
Consensus pattern (18 bp):
TATCCTAACCCTTATATA
Found at i:72960444 original size:27 final size:27
Alignment explanation
Indices: 72960414--72960511 Score: 87
Period size: 27 Copynumber: 3.6 Consensus size: 27
72960404 TAAAAGTTGT
72960414 TTTTAATATTT-TAATTATAATTTACTC
1 TTTT-ATATTTGTAATTATAATTTACTC
* * *
72960441 TTTTATATTTGTAATAAAATAAAAGTT-GT-
1 TTTTATATTTGTAAT----TATAATTTACTC
72960470 TTTTAGTATTT-TAATTATAATTTACTC
1 TTTTA-TATTTGTAATTATAATTTACTC
72960497 TTTTATATTTGTAAT
1 TTTTATATTTGTAAT
72960512 AGAATAAAAG
Statistics
Matches: 56, Mismatches: 6, Indels: 18
0.70 0.08 0.22
Matches are distributed among these distances:
25 6 0.11
26 12 0.21
27 17 0.30
29 9 0.16
30 6 0.11
31 6 0.11
ACGTcount: A:0.34, C:0.04, G:0.05, T:0.57
Consensus pattern (27 bp):
TTTTATATTTGTAATTATAATTTACTC
Found at i:72960461 original size:56 final size:56
Alignment explanation
Indices: 72960396--72960533 Score: 249
Period size: 56 Copynumber: 2.5 Consensus size: 56
72960386 TTCTTTCATT
72960396 TAATAAAATAAAAGTTGTTTTTAATATTTTAATTATAATTTACTCTTTTATATTTG
1 TAATAAAATAAAAGTTGTTTTTAATATTTTAATTATAATTTACTCTTTTATATTTG
*
72960452 TAATAAAATAAAAGTTGTTTTTAGTATTTTAATTATAATTTACTCTTTTATATTTG
1 TAATAAAATAAAAGTTGTTTTTAATATTTTAATTATAATTTACTCTTTTATATTTG
* *
72960508 TAATAGAATAAAAGTTGTTTTGAATA
1 TAATAAAATAAAAGTTGTTTTTAATA
72960534 AGGAAATATT
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
56 78 1.00
ACGTcount: A:0.38, C:0.03, G:0.08, T:0.51
Consensus pattern (56 bp):
TAATAAAATAAAAGTTGTTTTTAATATTTTAATTATAATTTACTCTTTTATATTTG
Found at i:72965462 original size:35 final size:35
Alignment explanation
Indices: 72965411--72965477 Score: 116
Period size: 35 Copynumber: 1.9 Consensus size: 35
72965401 ATATTTCATA
*
72965411 ATAACAATCTTCATATCATATAAATAACATTAATG
1 ATAACAATCATCATATCATATAAATAACATTAATG
*
72965446 ATAATAATCATCATATCATATAAATAACATTA
1 ATAACAATCATCATATCATATAAATAACATTA
72965478 TATTACTTAA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 30 1.00
ACGTcount: A:0.51, C:0.13, G:0.01, T:0.34
Consensus pattern (35 bp):
ATAACAATCATCATATCATATAAATAACATTAATG
Found at i:72965480 original size:19 final size:19
Alignment explanation
Indices: 72965423--72965480 Score: 61
Period size: 19 Copynumber: 3.2 Consensus size: 19
72965413 AACAATCTTC
72965423 ATATCATATAAATAACATT
1 ATATCATATAAATAACATT
* *
72965442 A-AT--GAT-AATAATCATC
1 ATATCATATAAATAA-CATT
72965458 ATATCATATAAATAACATT
1 ATATCATATAAATAACATT
72965477 ATAT
1 ATAT
72965481 TACTTAAATT
Statistics
Matches: 30, Mismatches: 4, Indels: 10
0.68 0.09 0.23
Matches are distributed among these distances:
15 5 0.17
16 6 0.20
17 2 0.07
18 2 0.07
19 10 0.33
20 5 0.17
ACGTcount: A:0.52, C:0.10, G:0.02, T:0.36
Consensus pattern (19 bp):
ATATCATATAAATAACATT
Found at i:72966776 original size:126 final size:126
Alignment explanation
Indices: 72966542--72966776 Score: 353
Period size: 126 Copynumber: 1.9 Consensus size: 126
72966532 GGGATATTAC
* * * *
72966542 AAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTACTTTTGCTGACAGTGCATCCTGCTTAAAGCG
1 AAAAAAAGCGTCCACATGGGAGCATTTTTCAGTAATTTTGCTGACAGTGCATCCTGCTTAAAGCG
** * **
72966607 TTTTTTACACTATTTTTTCAGAAACATCTTCTCAAAATTATTTTCTTAGATACCATTGTAG
66 TTTTGGACACTATTTCTTCAGAAACATCTTCTCAAAAAAATTTTCTTAGATACCATTGTAG
*
72966668 AAAAAAAGCGTCCACATGGGAGCATTTTTCAGTAATTTTGCTGACAGTGCATCCTGCTTGAAGCG
1 AAAAAAAGCGTCCACATGGGAGCATTTTTCAGTAATTTTGCTGACAGTGCATCCTGCTTAAAGCG
* * *
72966733 TTTTGGATACTATTTCTTCAGAAACTTCTTCTTAAAAAAATTTT
66 TTTTGGACACTATTTCTTCAGAAACATCTTCTCAAAAAAATTTT
72966777 TCCAGATACT
Statistics
Matches: 96, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
126 96 1.00
ACGTcount: A:0.29, C:0.18, G:0.16, T:0.37
Consensus pattern (126 bp):
AAAAAAAGCGTCCACATGGGAGCATTTTTCAGTAATTTTGCTGACAGTGCATCCTGCTTAAAGCG
TTTTGGACACTATTTCTTCAGAAACATCTTCTCAAAAAAATTTTCTTAGATACCATTGTAG
Found at i:72966963 original size:26 final size:26
Alignment explanation
Indices: 72966929--72966991 Score: 117
Period size: 26 Copynumber: 2.4 Consensus size: 26
72966919 ATTAATATTT
72966929 AATTTAATTAATTAATCTTACACCCA
1 AATTTAATTAATTAATCTTACACCCA
*
72966955 AATTTAATTAATTAATCTTACACCCT
1 AATTTAATTAATTAATCTTACACCCA
72966981 AATTTAATTAA
1 AATTTAATTAA
72966992 CTAAACCCTT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 36 1.00
ACGTcount: A:0.43, C:0.16, G:0.00, T:0.41
Consensus pattern (26 bp):
AATTTAATTAATTAATCTTACACCCA
Found at i:72967049 original size:16 final size:15
Alignment explanation
Indices: 72967030--72967071 Score: 66
Period size: 16 Copynumber: 2.7 Consensus size: 15
72967020 AAAAAATCCT
72967030 AACCCTGAACCATAAA
1 AACCCT-AACCATAAA
72967046 AACCCTAAACCATAAA
1 AACCCT-AACCATAAA
72967062 AACCCTAACC
1 AACCCTAACC
72967072 CTAATCCCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
15 4 0.16
16 21 0.84
ACGTcount: A:0.50, C:0.36, G:0.02, T:0.12
Consensus pattern (15 bp):
AACCCTAACCATAAA
Found at i:72967876 original size:27 final size:25
Alignment explanation
Indices: 72967846--72967901 Score: 58
Period size: 27 Copynumber: 2.1 Consensus size: 25
72967836 GAAATAGGAT
*
72967846 TATTACGTAATATAATAATATATTATA
1 TATTA-GTAATACAATAATATA-TATA
* *
72967873 TATTTATTAATACAATTATATATATA
1 TA-TTAGTAATACAATAATATATATA
72967899 TAT
1 TAT
72967902 GACTATTAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
25 1 0.04
26 6 0.24
27 15 0.60
28 3 0.12
ACGTcount: A:0.46, C:0.04, G:0.02, T:0.48
Consensus pattern (25 bp):
TATTAGTAATACAATAATATATATA
Found at i:72979253 original size:47 final size:47
Alignment explanation
Indices: 72979200--72979294 Score: 190
Period size: 47 Copynumber: 2.0 Consensus size: 47
72979190 TTAAAATATG
72979200 ATAACTCATTTATTCTTTATTCTAATTTTTTATTTTTATATTTTTAT
1 ATAACTCATTTATTCTTTATTCTAATTTTTTATTTTTATATTTTTAT
72979247 ATAACTCATTTATTCTTTATTCTAATTTTTTATTTTTATATTTTTAT
1 ATAACTCATTTATTCTTTATTCTAATTTTTTATTTTTATATTTTTAT
72979294 A
1 A
72979295 ATTTTTAAAT
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 48 1.00
ACGTcount: A:0.26, C:0.08, G:0.00, T:0.65
Consensus pattern (47 bp):
ATAACTCATTTATTCTTTATTCTAATTTTTTATTTTTATATTTTTAT
Found at i:72985174 original size:27 final size:27
Alignment explanation
Indices: 72985144--72985295 Score: 214
Period size: 27 Copynumber: 5.6 Consensus size: 27
72985134 ATATTAAGTC
* * *
72985144 CGCACACTCAGTGTTATATAGTCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
*
72985171 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
*
72985199 CGCACACTTAGTGCTACATAGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
* *
72985226 CGCACACTTAGTGCAACATAGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
*
72985253 CGCACACTTAGTGTTACATAGTCCAACT
1 CGCACACTTAGTGCTACATAGT-CAACT
72985281 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
72985296 GTACAATTTA
Statistics
Matches: 112, Mismatches: 11, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
27 68 0.61
28 44 0.39
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAACT
Found at i:72985205 original size:55 final size:54
Alignment explanation
Indices: 72985144--72985295 Score: 223
Period size: 55 Copynumber: 2.8 Consensus size: 54
72985134 ATATTAAGTC
* *
72985144 CGCACACTCAGTGTTATATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGTTACATAGTCAACTCGCACACTTAGTGCTACATAATC-AACT
* * * * *
72985199 CGCACACTTAGTGCTACATAGTCAATTCGCACACTTAGTGCAACATAGTCAATT
1 CGCACACTTAGTGTTACATAGTCAACTCGCACACTTAGTGCTACATAATCAACT
72985253 CGCACACTTAGTGTTACATAGTCCAACTCGCACACTTAGTGCT
1 CGCACACTTAGTGTTACATAGT-CAACTCGCACACTTAGTGCT
72985296 GTACAATTTA
Statistics
Matches: 86, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
54 24 0.28
55 62 0.72
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.28
Consensus pattern (54 bp):
CGCACACTTAGTGTTACATAGTCAACTCGCACACTTAGTGCTACATAATCAACT
Found at i:72985826 original size:21 final size:21
Alignment explanation
Indices: 72985794--72985836 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 21
72985784 TTGGTCATCA
*
72985794 TTTTGTCATTCA-ACACATTT
1 TTTTGTCATTCATAAACATTT
*
72985814 TTTTTTCACTTCATAAACATTT
1 TTTTGTCA-TTCATAAACATTT
72985836 T
1 T
72985837 GACCGTATAC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 7 0.37
21 4 0.21
22 8 0.42
ACGTcount: A:0.26, C:0.19, G:0.02, T:0.53
Consensus pattern (21 bp):
TTTTGTCATTCATAAACATTT
Found at i:72988546 original size:11 final size:11
Alignment explanation
Indices: 72988532--72988565 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
72988522 TTTTTTTTGC
72988532 TTCTTCTTTCT
1 TTCTTCTTTCT
*
72988543 TTCTACTTTCT
1 TTCTTCTTTCT
72988554 TTCTTTCTTTCT
1 TTC-TTCTTTCT
72988566 CTGCTCTCTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
11 13 0.65
12 7 0.35
ACGTcount: A:0.03, C:0.26, G:0.00, T:0.71
Consensus pattern (11 bp):
TTCTTCTTTCT
Found at i:72988607 original size:4 final size:4
Alignment explanation
Indices: 72988600--72988647 Score: 59
Period size: 4 Copynumber: 13.0 Consensus size: 4
72988590 TTTTTTTTAC
*
72988600 CTTT CTTT C-TT CTTT CTTT C-TT CTTT CTTT C-TT CTTC CTTT C-TT
1 CTTT CTTT CTTT CTTT CTTT CTTT CTTT CTTT CTTT CTTT CTTT CTTT
72988644 CTTT
1 CTTT
72988648 ATTCTCTTTT
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
3 12 0.32
4 26 0.68
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (4 bp):
CTTT
Found at i:72988616 original size:11 final size:11
Alignment explanation
Indices: 72988600--72988647 Score: 87
Period size: 11 Copynumber: 4.4 Consensus size: 11
72988590 TTTTTTTTAC
72988600 CTTTCTTTCTT
1 CTTTCTTTCTT
72988611 CTTTCTTTCTT
1 CTTTCTTTCTT
72988622 CTTTCTTTCTT
1 CTTTCTTTCTT
*
72988633 CTTCCTTTCTT
1 CTTTCTTTCTT
72988644 CTTT
1 CTTT
72988648 ATTCTCTTTT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 35 1.00
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (11 bp):
CTTTCTTTCTT
Found at i:72988665 original size:22 final size:22
Alignment explanation
Indices: 72988600--72988665 Score: 62
Period size: 22 Copynumber: 3.0 Consensus size: 22
72988590 TTTTTTTTAC
* * *
72988600 CTTTCTTTCTTCTTTCTTTCTT
1 CTTTATTTCTTCTTCCTATCTT
* *
72988622 CTTTCTTTCTTCTTCCTTTCTT
1 CTTTATTTCTTCTTCCTATCTT
*
72988644 CTTTATTCTCTT-TTGCTATCTT
1 CTTTATT-TCTTCTTCCTATCTT
72988666 TTTTTTGTTG
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
22 35 0.90
23 4 0.10
ACGTcount: A:0.03, C:0.27, G:0.02, T:0.68
Consensus pattern (22 bp):
CTTTATTTCTTCTTCCTATCTT
Found at i:72996746 original size:47 final size:47
Alignment explanation
Indices: 72996672--72996886 Score: 242
Period size: 47 Copynumber: 4.6 Consensus size: 47
72996662 GGTAAGATGC
*
72996672 CGATGCCATGTCCTAGACATGGTCTTACATTGGCTCATATCTCAAGT
1 CGATGCCATGTCCCAGACATGGTCTTACATTGGCTCATATCTCAAGT
* * *
72996719 CGATCCCATGTCCTAGACATGGTCTTACACTGGCTCATATCTCAAGT
1 CGATGCCATGTCCCAGACATGGTCTTACATTGGCTCATATCTCAAGT
* * * *
72996766 CGATGCCATGTCCCAAACATGGTTTTACATTGAC-CATCATCTCGTAGT
1 CGATGCCATGTCCCAGACATGGTCTTACATTGGCTCAT-ATCTC-AAGT
* * * * * *
72996814 CGATG-CATGTCCCAGACAT-GTCTTACACTAGCTTACATCTCGAGGC
1 CGATGCCATGTCCCAGACATGGTCTTACATTGGCTCATATCTC-AAGT
72996860 CGATG-CATGTCCCAGACAT-GTCTTACA
1 CGATGCCATGTCCCAGACATGGTCTTACA
72996887 GTAGCACTCG
Statistics
Matches: 146, Mismatches: 19, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
46 46 0.32
47 92 0.63
48 8 0.05
ACGTcount: A:0.24, C:0.28, G:0.18, T:0.29
Consensus pattern (47 bp):
CGATGCCATGTCCCAGACATGGTCTTACATTGGCTCATATCTCAAGT
Found at i:73001177 original size:2 final size:2
Alignment explanation
Indices: 73001170--73001230 Score: 122
Period size: 2 Copynumber: 30.5 Consensus size: 2
73001160 TCTGCAAGCT
73001170 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
73001212 TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC T
73001231 AAGTTAATTT
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 59 1.00
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (2 bp):
TC
Done.