Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 223 of 349
Found at i:73007057 original size:30 final size:30
Alignment explanation
Indices: 73007018--73007074 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
73007008 TTTTATAAGT
73007018 AATTAATATTT-AT-TACTTAAAAATATTTAA
1 AATTAATATTTCATATA-TT-AAAATATTTAA
*
73007048 AATTTATATTTCATATATTAAAATATT
1 AATTAATATTTCATATATTAAAATATT
73007075 AACAAGTTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
30 18 0.75
31 4 0.17
32 2 0.08
ACGTcount: A:0.47, C:0.04, G:0.00, T:0.49
Consensus pattern (30 bp):
AATTAATATTTCATATATTAAAATATTTAA
Found at i:73007766 original size:31 final size:31
Alignment explanation
Indices: 73007723--73007799 Score: 75
Period size: 31 Copynumber: 2.5 Consensus size: 31
73007713 TTATAAAATA
*
73007723 TCATT-AAGTTATTAGAAAGTTTTCATTTAAC
1 TCATTGAA-TTATTAGAAACTTTTCATTTAAC
* * * *
73007754 TCATTGAATTATTTGTAACTTTTTATTTAAG
1 TCATTGAATTATTAGAAACTTTTCATTTAAC
* *
73007785 TTATTGGATTATTAG
1 TCATTGAATTATTAG
73007800 TTATTTTAAA
Statistics
Matches: 37, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
31 35 0.95
32 2 0.05
ACGTcount: A:0.31, C:0.06, G:0.12, T:0.51
Consensus pattern (31 bp):
TCATTGAATTATTAGAAACTTTTCATTTAAC
Found at i:73010733 original size:27 final size:27
Alignment explanation
Indices: 73010695--73010750 Score: 112
Period size: 27 Copynumber: 2.1 Consensus size: 27
73010685 AAGTGTATTT
73010695 ATAGAAAATGTCCTATTGTCCACCAAC
1 ATAGAAAATGTCCTATTGTCCACCAAC
73010722 ATAGAAAATGTCCTATTGTCCACCAAC
1 ATAGAAAATGTCCTATTGTCCACCAAC
73010749 AT
1 AT
73010751 GACGTGGCAG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.38, C:0.25, G:0.11, T:0.27
Consensus pattern (27 bp):
ATAGAAAATGTCCTATTGTCCACCAAC
Found at i:73012078 original size:26 final size:25
Alignment explanation
Indices: 73012006--73012078 Score: 83
Period size: 26 Copynumber: 2.8 Consensus size: 25
73011996 TCATCCCAAA
73012006 TTTACCCTAGTAAAATTTTTGACAAT
1 TTTACCCTAGTAAAA-TTTTGACAAT
* * * *
73012032 TTTACCCCAATAAAAATTTGACGAT
1 TTTACCCTAGTAAAATTTTGACAAT
*
73012057 TTTGTCCCTAGTAAAATTTTGA
1 TTT-ACCCTAGTAAAATTTTGA
73012079 GGAAATTAAT
Statistics
Matches: 38, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
25 11 0.29
26 27 0.71
ACGTcount: A:0.34, C:0.16, G:0.10, T:0.40
Consensus pattern (25 bp):
TTTACCCTAGTAAAATTTTGACAAT
Found at i:73016656 original size:17 final size:17
Alignment explanation
Indices: 73016629--73016672 Score: 54
Period size: 17 Copynumber: 2.6 Consensus size: 17
73016619 AAAAGAAAGT
*
73016629 AATAAATAATAAA-ATAA
1 AATAAAAAATAAAGA-AA
*
73016646 AATAATAAATAAAGAAA
1 AATAAAAAATAAAGAAA
73016663 AATAAAAAAT
1 AATAAAAAAT
73016673 TAGGTTGCCT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
17 22 0.96
18 1 0.04
ACGTcount: A:0.77, C:0.00, G:0.02, T:0.20
Consensus pattern (17 bp):
AATAAAAAATAAAGAAA
Found at i:73017136 original size:21 final size:21
Alignment explanation
Indices: 73017110--73017150 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
73017100 CTCAAGACTG
73017110 TTTACGCTCAAGATTTCACTA
1 TTTACGCTCAAGATTTCACTA
73017131 TTTACGCTCAAGATTTCACT
1 TTTACGCTCAAGATTTCACT
73017151 TATGTTGTCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.27, C:0.24, G:0.10, T:0.39
Consensus pattern (21 bp):
TTTACGCTCAAGATTTCACTA
Found at i:73018209 original size:33 final size:33
Alignment explanation
Indices: 73018160--73018236 Score: 100
Period size: 33 Copynumber: 2.3 Consensus size: 33
73018150 TTGTTTCATT
* *
73018160 TTGGAAATCAAGAGTTTGCCGTTATATTTGCTA
1 TTGGAAATCAACAGTTTGCCGTTATATCTGCTA
* * *
73018193 TTGGAAATCTACAGTTTGCTGTTGTATCTGCTA
1 TTGGAAATCAACAGTTTGCCGTTATATCTGCTA
*
73018226 TTGCAAATCAA
1 TTGGAAATCAA
73018237 GCGTATTAGC
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
33 37 1.00
ACGTcount: A:0.27, C:0.14, G:0.19, T:0.39
Consensus pattern (33 bp):
TTGGAAATCAACAGTTTGCCGTTATATCTGCTA
Found at i:73022161 original size:25 final size:27
Alignment explanation
Indices: 73022133--73022186 Score: 67
Period size: 25 Copynumber: 2.1 Consensus size: 27
73022123 ATTAATTTGG
73022133 TTTAATTAACTTAAACA-T-AACTTAA
1 TTTAATTAACTTAAACACTAAACTTAA
* * *
73022158 TTTACTTAAGTTAATCACTAAACTTAA
1 TTTAATTAACTTAAACACTAAACTTAA
73022185 TT
1 TT
73022187 AGTGGAAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 14 0.58
26 1 0.04
27 9 0.38
ACGTcount: A:0.43, C:0.13, G:0.02, T:0.43
Consensus pattern (27 bp):
TTTAATTAACTTAAACACTAAACTTAA
Found at i:73022808 original size:28 final size:28
Alignment explanation
Indices: 73022768--73022824 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
73022758 AAGCCATGAG
73022768 TATGTGGAATTGATGTTGGAATATTAAA
1 TATGTGGAATTGATGTTGGAATATTAAA
73022796 TATGTGGAATTGATGTTGGAATATTAAA
1 TATGTGGAATTGATGTTGGAATATTAAA
73022824 T
1 T
73022825 TTGTTCTGAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.35, C:0.00, G:0.25, T:0.40
Consensus pattern (28 bp):
TATGTGGAATTGATGTTGGAATATTAAA
Found at i:73023909 original size:18 final size:18
Alignment explanation
Indices: 73023845--73023940 Score: 58
Period size: 17 Copynumber: 5.5 Consensus size: 18
73023835 ATGTGTATTA
*
73023845 AATTTTT-A-ATATCTTG
1 AATTTTTAATATATTTTG
* *
73023861 AATTTTTATATATATCTGG
1 AATTTTTA-ATATATTTTG
* *
73023880 AAACTTTT-ATATTTTTTG
1 -AATTTTTAATATATTTTG
*
73023898 AATTTTTAATAT-TTTTT
1 AATTTTTAATATATTTTG
* *
73023915 AA-GTTTATTATATTTTG
1 AATTTTTAATATATTTTG
*
73023932 AAATTTTAA
1 AATTTTTAA
73023941 ATAGTTTTTA
Statistics
Matches: 61, Mismatches: 12, Indels: 12
0.72 0.14 0.14
Matches are distributed among these distances:
16 14 0.23
17 18 0.30
18 16 0.26
19 7 0.11
20 6 0.10
ACGTcount: A:0.32, C:0.03, G:0.06, T:0.58
Consensus pattern (18 bp):
AATTTTTAATATATTTTG
Found at i:73023949 original size:35 final size:33
Alignment explanation
Indices: 73023885--73023951 Score: 89
Period size: 35 Copynumber: 2.0 Consensus size: 33
73023875 TCTGGAAACT
* * *
73023885 TTTATATTTTTTGAATTTTTAATATTTTTTAAG
1 TTTATATATTTTGAATTTTAAATAGTTTTTAAG
73023918 TTTATTATATTTTGAAATTTTAAATAGTTTTTAA
1 TTTA-TATATTTTG-AATTTTAAATAGTTTTTAA
73023952 AATTTTAGAA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
33 4 0.14
34 8 0.28
35 17 0.59
ACGTcount: A:0.31, C:0.00, G:0.06, T:0.63
Consensus pattern (33 bp):
TTTATATATTTTGAATTTTAAATAGTTTTTAAG
Found at i:73026649 original size:131 final size:130
Alignment explanation
Indices: 73026413--73026672 Score: 380
Period size: 131 Copynumber: 2.0 Consensus size: 130
73026403 TAAGTATTCT
* * *
73026413 TTTAAAAATTCTCTAAAACGAAGGCAATACTCGATGTTTGGCAATTCGAGAATCGTGCTCTATCG
1 TTTAAAAACTCTCTAAAACAAAGGCAATACTCGATGTTTGGCAATTCGAGAATCGTGCCCTATCG
* * * * *
73026478 TGCTGGGTTGTGATTTCCCGTTTGTTCAAAACAATTGAATATTCCTTTGGAATTTGACTCATGTC
66 TGCTAGGTTGCGATTTCCCGTTTGTTCAAAACAATCGAATATTCCTTTAGAATTTCACTCATGTC
*
73026543 TTTAAAAACTCT-TCAAAACAAAGGTAATACTCGATGTTTGGCAATTCGAGGAA-CTGTGCCCTA
1 TTTAAAAACTCTCT-AAAACAAAGGCAATACTCGATGTTTGGCAATTCGA-GAATC-GTGCCCTA
* *
73026606 TCGTGCTAGGTTGCGATTTCCTGTTTGTTCAAAATAATCGAATATTCCTTTAGAATTTCACTCAT
63 TCGTGCTAGGTTGCGATTTCCCGTTTGTTCAAAACAATCGAATATTCCTTTAGAATTTCACTCAT
73026671 GT
128 GT
73026673 TCTCTAAATT
Statistics
Matches: 116, Mismatches: 11, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
129 1 0.01
130 45 0.39
131 70 0.60
ACGTcount: A:0.28, C:0.18, G:0.18, T:0.36
Consensus pattern (130 bp):
TTTAAAAACTCTCTAAAACAAAGGCAATACTCGATGTTTGGCAATTCGAGAATCGTGCCCTATCG
TGCTAGGTTGCGATTTCCCGTTTGTTCAAAACAATCGAATATTCCTTTAGAATTTCACTCATGTC
Found at i:73028263 original size:36 final size:36
Alignment explanation
Indices: 73028194--73028263 Score: 90
Period size: 36 Copynumber: 1.9 Consensus size: 36
73028184 ATCTATAACA
*
73028194 TAGTAATAGTTATATATATATATATTTTGATAGTTT
1 TAGTAATAGTTATATATATATATATTTTAATAGTTT
*
73028230 TAGTCATAGTTA-ATATAT-TATATTATGTAATAGT
1 TAGTAATAGTTATATATATATATATT-T-TAATAGT
73028264 ATAACATCTA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
34 6 0.20
35 7 0.23
36 17 0.57
ACGTcount: A:0.37, C:0.01, G:0.11, T:0.50
Consensus pattern (36 bp):
TAGTAATAGTTATATATATATATATTTTAATAGTTT
Found at i:73031559 original size:26 final size:26
Alignment explanation
Indices: 73031521--73031578 Score: 98
Period size: 26 Copynumber: 2.2 Consensus size: 26
73031511 CATGAAATTC
73031521 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
73031547 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
73031573 TTATCA
1 TTATCA
73031579 ATTTGTATCA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.36, C:0.24, G:0.05, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:73034493 original size:23 final size:22
Alignment explanation
Indices: 73034459--73034504 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 22
73034449 TAATTAGATA
* *
73034459 AATAATATTTTATTAATATTTT
1 AATAAGATTTTATGAATATTTT
*
73034481 AATAAGATATTTATGATTATTTT
1 AATAAGAT-TTTATGAATATTTT
73034504 A
1 A
73034505 TTATTTTATT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
22 7 0.35
23 13 0.65
ACGTcount: A:0.41, C:0.00, G:0.04, T:0.54
Consensus pattern (22 bp):
AATAAGATTTTATGAATATTTT
Found at i:73037502 original size:45 final size:44
Alignment explanation
Indices: 73037447--73037533 Score: 138
Period size: 45 Copynumber: 2.0 Consensus size: 44
73037437 GCGCTTAATC
* *
73037447 AACATATTTTTAGTGATTTATTCTAGTTAATTTTTGATATGTAAG
1 AACATATTTTTAGTGATTTATTCTAGTT-AGTTTGGATATGTAAG
*
73037492 AACATGTTTTTAGTGATTTATTCTAGTTAGTTTGGATATGTA
1 AACATATTTTTAGTGATTTATTCTAGTTAGTTTGGATATGTA
73037534 TGCTACTAAT
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
44 12 0.31
45 27 0.69
ACGTcount: A:0.29, C:0.05, G:0.16, T:0.51
Consensus pattern (44 bp):
AACATATTTTTAGTGATTTATTCTAGTTAGTTTGGATATGTAAG
Found at i:73038541 original size:15 final size:16
Alignment explanation
Indices: 73038523--73038557 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
73038513 ATTTTGATTT
73038523 TTTTGATTTT-TGTTA
1 TTTTGATTTTATGTTA
*
73038538 TTTTGATTTTATTTTA
1 TTTTGATTTTATGTTA
73038554 TTTT
1 TTTT
73038558 TAATCAAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 10 0.56
16 8 0.44
ACGTcount: A:0.14, C:0.00, G:0.09, T:0.77
Consensus pattern (16 bp):
TTTTGATTTTATGTTA
Found at i:73038578 original size:28 final size:28
Alignment explanation
Indices: 73038547--73038613 Score: 98
Period size: 28 Copynumber: 2.4 Consensus size: 28
73038537 ATTTTGATTT
73038547 TATTTTATTTTTAATCAAATTAAAATCC
1 TATTTTATTTTTAATCAAATTAAAATCC
** *
73038575 TATTTTATTTTTAATTGAATTTAAATCC
1 TATTTTATTTTTAATCAAATTAAAATCC
*
73038603 TCTTTTATTTT
1 TATTTTATTTT
73038614 CTGTAGAGAT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.31, C:0.09, G:0.01, T:0.58
Consensus pattern (28 bp):
TATTTTATTTTTAATCAAATTAAAATCC
Found at i:73039427 original size:18 final size:17
Alignment explanation
Indices: 73039382--73039430 Score: 53
Period size: 18 Copynumber: 2.8 Consensus size: 17
73039372 GGATTTTTGT
*
73039382 AATTAAATTTAAATAAA
1 AATTAATTTTAAATAAA
* *
73039399 AAATATTTTTTAAATTAAA
1 AATTA-ATTTTAAA-TAAA
73039418 AATTAATTTTAAA
1 AATTAATTTTAAA
73039431 AATATAAAAT
Statistics
Matches: 25, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
17 4 0.16
18 13 0.52
19 8 0.32
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (17 bp):
AATTAATTTTAAATAAA
Found at i:73039427 original size:19 final size:18
Alignment explanation
Indices: 73039389--73039441 Score: 52
Period size: 19 Copynumber: 2.8 Consensus size: 18
73039379 TGTAATTAAA
*
73039389 TTTAAATAAAAAATATTT
1 TTTAAATAAAAAATAATT
*
73039407 TTTAAATTAAAAATTAATT
1 TTTAAA-TAAAAAATAATT
* *
73039426 TTAAAAATATAAAATA
1 TT-TAAATAAAAAATA
73039442 TCAATTAAAA
Statistics
Matches: 28, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
18 6 0.21
19 19 0.68
20 3 0.11
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (18 bp):
TTTAAATAAAAAATAATT
Found at i:73040540 original size:18 final size:19
Alignment explanation
Indices: 73040496--73040541 Score: 53
Period size: 18 Copynumber: 2.6 Consensus size: 19
73040486 AAAATTTAAT
*
73040496 ATAAAGA-TAATAAATATA
1 ATAAAGATTAATAAATAAA
*
73040514 AT-AATATTAATAAA-AAA
1 ATAAAGATTAATAAATAAA
73040531 ATAAAGATTAA
1 ATAAAGATTAA
73040542 CCAATAGAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
17 7 0.30
18 16 0.70
ACGTcount: A:0.67, C:0.00, G:0.04, T:0.28
Consensus pattern (19 bp):
ATAAAGATTAATAAATAAA
Found at i:73040760 original size:17 final size:16
Alignment explanation
Indices: 73040736--73040767 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
73040726 AATTTTCTAG
73040736 ATTTTATAATTATTAA
1 ATTTTATAATTATTAA
73040752 ATTTATATAATTATTA
1 ATTT-TATAATTATTA
73040768 TACATATGAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (16 bp):
ATTTTATAATTATTAA
Found at i:73041346 original size:20 final size:20
Alignment explanation
Indices: 73041323--73041376 Score: 74
Period size: 20 Copynumber: 2.7 Consensus size: 20
73041313 AAACATTATC
73041323 AATATTGATAAATACTTAAA
1 AATATTGATAAATACTTAAA
* *
73041343 AATATTGATTAAGT-GTTAAA
1 AATATTGA-TAAATACTTAAA
73041363 AATATTGATAAATA
1 AATATTGATAAATA
73041377 TTTTGATACC
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
19 4 0.14
20 21 0.72
21 4 0.14
ACGTcount: A:0.52, C:0.02, G:0.09, T:0.37
Consensus pattern (20 bp):
AATATTGATAAATACTTAAA
Found at i:73044605 original size:28 final size:28
Alignment explanation
Indices: 73044565--73044622 Score: 116
Period size: 28 Copynumber: 2.1 Consensus size: 28
73044555 ACTTGCTATA
73044565 CATAGTGGATAGACCTAAATAGAGTAGT
1 CATAGTGGATAGACCTAAATAGAGTAGT
73044593 CATAGTGGATAGACCTAAATAGAGTAGT
1 CATAGTGGATAGACCTAAATAGAGTAGT
73044621 CA
1 CA
73044623 AAAGCAGAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.40, C:0.12, G:0.24, T:0.24
Consensus pattern (28 bp):
CATAGTGGATAGACCTAAATAGAGTAGT
Found at i:73045371 original size:23 final size:23
Alignment explanation
Indices: 73045336--73045388 Score: 63
Period size: 23 Copynumber: 2.3 Consensus size: 23
73045326 GGATTTAAAT
* *
73045336 AAATACTCATA-TTTGTATTATTA
1 AAATATTCATATTTTGTAGTA-TA
*
73045359 AAATATTCTTATTTTGTAGTATA
1 AAATATTCATATTTTGTAGTATA
73045382 AAATATT
1 AAATATT
73045389 TTTAATTGCA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
23 18 0.69
24 8 0.31
ACGTcount: A:0.40, C:0.06, G:0.06, T:0.49
Consensus pattern (23 bp):
AAATATTCATATTTTGTAGTATA
Found at i:73045638 original size:7 final size:6
Alignment explanation
Indices: 73045619--73045654 Score: 63
Period size: 6 Copynumber: 5.8 Consensus size: 6
73045609 ATATTTTAAC
73045619 AATAAA AATAAA AATAAA AATAAAA AATAAA AATAA
1 AATAAA AATAAA AATAAA AAT-AAA AATAAA AATAA
73045655 TATTTTACTT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
6 23 0.79
7 6 0.21
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (6 bp):
AATAAA
Found at i:73045644 original size:13 final size:13
Alignment explanation
Indices: 73045619--73045654 Score: 65
Period size: 13 Copynumber: 2.8 Consensus size: 13
73045609 ATATTTTAAC
73045619 AATAAAAAT-AAA
1 AATAAAAATAAAA
73045631 AATAAAAATAAAA
1 AATAAAAATAAAA
73045644 AATAAAAATAA
1 AATAAAAATAA
73045655 TATTTTACTT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
12 9 0.39
13 14 0.61
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (13 bp):
AATAAAAATAAAA
Found at i:73046865 original size:20 final size:19
Alignment explanation
Indices: 73046842--73046906 Score: 58
Period size: 19 Copynumber: 3.3 Consensus size: 19
73046832 AGTCTCTCTC
73046842 TCAACAAAAATTACAAAAAT
1 TCAA-AAAAATTACAAAAAT
* * *
73046862 TCAAAATAATTTCTAAAAT
1 TCAAAAAAATTACAAAAAT
* * *
73046881 TCAAAATATTTATAAAAAT
1 TCAAAAAAATTACAAAAAT
73046900 TCCAAAA
1 T-CAAAA
73046907 TTTATATCTT
Statistics
Matches: 37, Mismatches: 7, Indels: 2
0.80 0.15 0.04
Matches are distributed among these distances:
19 28 0.76
20 9 0.24
ACGTcount: A:0.58, C:0.12, G:0.00, T:0.29
Consensus pattern (19 bp):
TCAAAAAAATTACAAAAAT
Found at i:73046879 original size:19 final size:19
Alignment explanation
Indices: 73046856--73046912 Score: 73
Period size: 19 Copynumber: 3.1 Consensus size: 19
73046846 CAAAAATTAC
*
73046856 AAAAATTCAAAATAATTTCT
1 AAAAATTCAAAAT-ATTTAT
73046876 -AAAATTCAAAATATTTAT
1 AAAAATTCAAAATATTTAT
*
73046894 AAAAATTCCAAA-ATTTAT
1 AAAAATTCAAAATATTTAT
73046912 A
1 A
73046913 TCTTTTAAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
18 12 0.35
19 22 0.65
ACGTcount: A:0.56, C:0.09, G:0.00, T:0.35
Consensus pattern (19 bp):
AAAAATTCAAAATATTTAT
Found at i:73046927 original size:19 final size:18
Alignment explanation
Indices: 73046903--73046945 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 18
73046893 TAAAAATTCC
*
73046903 AAAATTTATATCTTTTAAA
1 AAAATTAAT-TCTTTTAAA
*
73046922 AAAATTAATTTTTTTAAA
1 AAAATTAATTCTTTTAAA
73046940 AAAATT
1 AAAATT
73046946 CTAAAAAATA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 14 0.64
19 8 0.36
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (18 bp):
AAAATTAATTCTTTTAAA
Found at i:73046952 original size:11 final size:10
Alignment explanation
Indices: 73046934--73046978 Score: 54
Period size: 11 Copynumber: 4.3 Consensus size: 10
73046924 AATTAATTTT
73046934 TTTAAAAAAA
1 TTTAAAAAAA
73046944 TTCTAAAAAATA
1 TT-TAAAAAA-A
*
73046956 TATAAAAAAA
1 TTTAAAAAAA
*
73046966 GTTAAAAAAA
1 TTTAAAAAAA
73046976 TTT
1 TTT
73046979 TCTAGAATAA
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
10 13 0.45
11 14 0.48
12 2 0.07
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.31
Consensus pattern (10 bp):
TTTAAAAAAA
Found at i:73054632 original size:47 final size:47
Alignment explanation
Indices: 73054481--73054654 Score: 151
Period size: 46 Copynumber: 3.7 Consensus size: 47
73054471 ACATCTCGTA
* * ** * *
73054481 GCCGACGCATGTCCCAGACATGTCTGACATTGGCTAACATCT-CGAG
1 GCCGATGCATGTCCCAGACATGTCTTACATTGGCTCTCATCTATGTG
* * * ** *
73054527 GCCGATGCATGTCCCAGACATGTCTTACACTAGCACTTGTCTCAATAT-
1 GCCGATGCATGTCCCAGACATGTCTTACATTGGCTCTCATCT--ATGTG
73054575 --CGATGCCATGTCCCAGACATGGTCTTACATTGGCTCTCAT-TATGTG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACATTGGCTCTCATCTATGTG
* *
73054621 GCCGATGCATGTCCCAGACATGTCTAACACTGGC
1 GCCGATGCATGTCCCAGACATGTCTTACATTGGC
73054655 GCACATATCT
Statistics
Matches: 100, Mismatches: 20, Indels: 16
0.74 0.15 0.12
Matches are distributed among these distances:
45 3 0.03
46 49 0.49
47 29 0.29
48 19 0.19
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.26
Consensus pattern (47 bp):
GCCGATGCATGTCCCAGACATGTCTTACATTGGCTCTCATCTATGTG
Found at i:73054678 original size:94 final size:92
Alignment explanation
Indices: 73054488--73054666 Score: 218
Period size: 94 Copynumber: 1.9 Consensus size: 92
73054478 GTAGCCGACG
*
73054488 CATGTCCCAGACAT-GTCTGACATTGGCTAACATCTCGAGGCCGATGCATGTCCCAGACATGTCT
1 CATGTCCCAGACATGGTCTTACATTGGCTAACATCTCGAGGCCGATGCATGTCCCAGACATGTCT
* * *
73054552 TACACTAGCACTTGTCTCAATATCGATGC
66 AACACTAGCACATATCTCAATAT--ATGC
** * *
73054581 CATGTCCCAGACATGGTCTTACATTGGCTCTCAT-TATGTGGCCGATGCATGTCCCAGACATGTC
1 CATGTCCCAGACATGGTCTTACATTGGCTAACATCT-CGAGGCCGATGCATGTCCCAGACATGTC
*
73054645 TAACACTGGCGCACATATCTCA
65 TAACACT--AGCACATATCTCA
73054667 TGTATTGCCA
Statistics
Matches: 73, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
93 15 0.21
94 48 0.66
96 10 0.14
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (92 bp):
CATGTCCCAGACATGGTCTTACATTGGCTAACATCTCGAGGCCGATGCATGTCCCAGACATGTCT
AACACTAGCACATATCTCAATATATGC
Found at i:73058793 original size:22 final size:22
Alignment explanation
Indices: 73058760--73058802 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
73058750 TAACATGTAT
73058760 CACATATATCATGAGCTCAGAC
1 CACATATATCATGAGCTCAGAC
73058782 CACATA-ACTCATGAGCTCAGA
1 CACATATA-TCATGAGCTCAGA
73058803 TCGCGTAGTC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
21 1 0.05
22 19 0.95
ACGTcount: A:0.37, C:0.28, G:0.14, T:0.21
Consensus pattern (22 bp):
CACATATATCATGAGCTCAGAC
Found at i:73063717 original size:51 final size:50
Alignment explanation
Indices: 73063633--73063821 Score: 166
Period size: 50 Copynumber: 3.7 Consensus size: 50
73063623 AACTATCTTT
* * * * *
73063633 TACACATAGTGGCCTGCACTTAGTACCATACATGTGATCGAAGCTAT-TGGG
1 TACACATAGTAGCCTGCACTTAGTACTACACATGTGACCGAA-CCATCT-GG
* * *
73063684 TA-AGCATAGTAGCCTGTACTTAGTACTACACATGCGACCTAACCATCTGG
1 TACA-CATAGTAGCCTGCACTTAGTACTACACATGTGACCGAACCATCTGG
* * * * **
73063734 TACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAAAACCATTTTA
1 TACACATAGTAGCCTGCACTTAGTACTACACATGTGACC--GAACCATCTGG
* * *
73063786 AATACATAGTAGCCTGCACATAGTACTACACATGTG
1 TACACATAGTAGCCTGCACTTAGTACTACACATGTG
73063822 TTCTCACAAC
Statistics
Matches: 112, Mismatches: 21, Indels: 9
0.79 0.15 0.06
Matches are distributed among these distances:
50 39 0.35
51 35 0.31
52 38 0.34
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.26
Consensus pattern (50 bp):
TACACATAGTAGCCTGCACTTAGTACTACACATGTGACCGAACCATCTGG
Found at i:73063755 original size:50 final size:51
Alignment explanation
Indices: 73063688--73063819 Score: 158
Period size: 52 Copynumber: 2.6 Consensus size: 51
73063678 ATTGGGTAAG
* **
73063688 CATAGTAGCCTGTACTTAGTACTACACATGCGACCT-AACCATCTGGTACA
1 CATAGTAGCCTGCACTTAGTACTACACATGCGACCTAAACCATCTGAAACA
* * * * * *
73063738 CGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAAAACCATTTTAAATA
1 CATAGTAGCCTGCACTTAGTACTACACATGCGACCT-AAACCATCTGAAACA
*
73063790 CATAGTAGCCTGCACATAGTACTACACATG
1 CATAGTAGCCTGCACTTAGTACTACACATG
73063820 TGTTCTCACA
Statistics
Matches: 68, Mismatches: 12, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
50 32 0.47
52 36 0.53
ACGTcount: A:0.33, C:0.27, G:0.15, T:0.26
Consensus pattern (51 bp):
CATAGTAGCCTGCACTTAGTACTACACATGCGACCTAAACCATCTGAAACA
Found at i:73065597 original size:22 final size:22
Alignment explanation
Indices: 73065556--73065599 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
73065546 CTTTAGCCAT
*
73065556 TTTTTATTTTTTTTGAAATTTA
1 TTTTTATTTTTATTGAAATTTA
73065578 TTTTTATTTTTATT-ATAATTTA
1 TTTTTATTTTTATTGA-AATTTA
73065600 CTAACTTATC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 1 0.05
22 19 0.95
ACGTcount: A:0.25, C:0.00, G:0.02, T:0.73
Consensus pattern (22 bp):
TTTTTATTTTTATTGAAATTTA
Found at i:73070340 original size:12 final size:12
Alignment explanation
Indices: 73070320--73070391 Score: 51
Period size: 12 Copynumber: 6.2 Consensus size: 12
73070310 TTGAGTCCGA
* *
73070320 TTATTTTTATGT
1 TTATGTTTATTT
73070332 TTATGTTTATTT
1 TTATGTTTATTT
* *
73070344 TTATTTTTA-TC
1 TTATGTTTATTT
*
73070355 TTCT-TTTATTT
1 TTATGTTTATTT
*
73070366 TTATTTTTCA-TT
1 TTATGTTT-ATTT
*
73070378 TTATGTCTATTT
1 TTATGTTTATTT
73070390 TT
1 TT
73070392 TTTCCTATTT
Statistics
Matches: 47, Mismatches: 9, Indels: 8
0.73 0.14 0.12
Matches are distributed among these distances:
10 4 0.09
11 9 0.19
12 33 0.70
13 1 0.02
ACGTcount: A:0.15, C:0.06, G:0.04, T:0.75
Consensus pattern (12 bp):
TTATGTTTATTT
Found at i:73070378 original size:7 final size:6
Alignment explanation
Indices: 73070320--73070379 Score: 61
Period size: 6 Copynumber: 10.2 Consensus size: 6
73070310 TTGAGTCCGA
* * * *
73070320 TTATTT TTATGT TTATGT TTATTT TTATTT TTA-TC TT-CTT TTATTT
1 TTATTT TTATTT TTATTT TTATTT TTATTT TTATTT TTATTT TTATTT
73070366 TTATTT TTCATTT T
1 TTATTT TT-ATTT T
73070380 ATGTCTATTT
Statistics
Matches: 46, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
5 6 0.13
6 35 0.76
7 5 0.11
ACGTcount: A:0.15, C:0.05, G:0.03, T:0.77
Consensus pattern (6 bp):
TTATTT
Found at i:73070381 original size:18 final size:18
Alignment explanation
Indices: 73070324--73070391 Score: 61
Period size: 18 Copynumber: 3.9 Consensus size: 18
73070314 GTCCGATTAT
*
73070324 TTTTATGTTTATGTTT-A
1 TTTTATGTTTATTTTTCA
* *
73070341 TTTTTATTTTTA-TCTTC-
1 -TTTTATGTTTATTTTTCA
*
73070358 TTTTATTTTTATTTTTCA
1 TTTTATGTTTATTTTTCA
*
73070376 TTTTATGTCTATTTTT
1 TTTTATGTTTATTTTT
73070392 TTTCCTATTT
Statistics
Matches: 41, Mismatches: 6, Indels: 6
0.77 0.11 0.11
Matches are distributed among these distances:
16 11 0.27
17 6 0.15
18 24 0.59
ACGTcount: A:0.15, C:0.06, G:0.04, T:0.75
Consensus pattern (18 bp):
TTTTATGTTTATTTTTCA
Found at i:73070394 original size:28 final size:28
Alignment explanation
Indices: 73070331--73070394 Score: 71
Period size: 28 Copynumber: 2.3 Consensus size: 28
73070321 TATTTTTATG
* *
73070331 TTTATGTTTATTTTTATTTTTATCTTCT
1 TTTATTTTTATTTTTATTTTTATCGTCT
73070359 TTTATTTTTATTTTTCA-TTTTAT-GTCT
1 TTTATTTTTATTTTT-ATTTTTATCGTCT
73070386 ATTT-TTTTT
1 -TTTATTTTT
73070395 CCTATTTTGA
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
27 8 0.25
28 23 0.72
29 1 0.03
ACGTcount: A:0.14, C:0.06, G:0.03, T:0.77
Consensus pattern (28 bp):
TTTATTTTTATTTTTATTTTTATCGTCT
Found at i:73072131 original size:46 final size:46
Alignment explanation
Indices: 73072061--73072182 Score: 217
Period size: 46 Copynumber: 2.7 Consensus size: 46
73072051 GTCATTGTGG
*
73072061 GCTAGTGTAAGACGTGTCTAGGACATGCATTAGCCACATTATGAGA
1 GCTAGTGTAAGACGTGTCTGGGACATGCATTAGCCACATTATGAGA
73072107 GCTAGTGTAAGACGTGTCTGGGACATGCATTAGCCACATTATGAGA
1 GCTAGTGTAAGACGTGTCTGGGACATGCATTAGCCACATTATGAGA
* *
73072153 GCTAGTGTAAGACATGTTTGGGACATGCAT
1 GCTAGTGTAAGACGTGTCTGGGACATGCAT
73072183 CAGCTACGAG
Statistics
Matches: 73, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 73 1.00
ACGTcount: A:0.29, C:0.16, G:0.28, T:0.27
Consensus pattern (46 bp):
GCTAGTGTAAGACGTGTCTGGGACATGCATTAGCCACATTATGAGA
Found at i:73075159 original size:40 final size:39
Alignment explanation
Indices: 73075067--73075276 Score: 230
Period size: 40 Copynumber: 5.3 Consensus size: 39
73075057 TATTCGAATG
* *
73075067 ATATCCGGGCTAAG-TCCCGAAGGCTTTTATGCTAGTGCT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTAGTGCT
* *
73075106 ATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAG-TGCT
* *
73075146 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTG-CT
* *
73075186 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTAGTG-CT
* * * *
73075226 ATATCCGGGCTAAGACCCGAAGGC-CTTGTGCGAGTGGTT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGT-GCT
73075265 ATATCC-GGCTAA
1 ATATCCGGGCTAA
73075277 ATTTCGAAGG
Statistics
Matches: 147, Mismatches: 18, Indels: 13
0.83 0.10 0.07
Matches are distributed among these distances:
38 6 0.04
39 44 0.30
40 97 0.66
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (39 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGCT
Found at i:73079196 original size:93 final size:93
Alignment explanation
Indices: 73079084--73079254 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
73079074 GCCCATAAGT
* * *
73079084 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGGCTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
73079149 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
*
73079177 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
* *
73079242 TGAGTTCGGATGC
66 CGAGCTCGGATGC
73079255 TCAACCATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:73079251 original size:46 final size:46
Alignment explanation
Indices: 73079076--73079251 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 46
73079066 TGTAACCCGC
* *
73079076 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* *
73079122 CCATAAGTGAACTCGGGCTCAACTCAACGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** *
73079168 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* *
73079215 CCATAAGTGAACTCGGACTCAACTCAATGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
73079252 TGCTCAACCA
Statistics
Matches: 108, Mismatches: 15, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 68 0.63
47 31 0.29
49 4 0.04
50 1 0.01
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:73083361 original size:49 final size:47
Alignment explanation
Indices: 73083255--73083432 Score: 135
Period size: 50 Copynumber: 3.7 Consensus size: 47
73083245 TGTCGATGCT
* * * * *
73083255 ATGTCCCAGGCATGGTCTTACATTGGCTCATCCATCAAGTCGATGCC
1 ATGTCCCAGACATGGTCTTACATTGACTCATCAATCAAGTCGACGAC
* *
73083302 ATGTCTCAGACATGGTCTTACATTGACT-ATCGAAATCGAGGTCGACGAC
1 ATGTCCCAGACATGGTCTTACATTGACTCATC--AATC-AAGTCGACGAC
* * * * * * *
73083351 ATGTCCCAGACATGCTCTTACACTAGCTCTCA-CATATCTATGCCGATGCC
1 ATGTCCCAGACATGGTCTTACA-TTG-ACTCATCA-ATC-AAGTCGACGAC
* *
73083401 ATGTCCCAGACATGGTCTTACACTGACACATC
1 ATGTCCCAGACATGGTCTTACATTGACTCATC
73083433 TCGTAGCCGA
Statistics
Matches: 102, Mismatches: 21, Indels: 14
0.74 0.15 0.10
Matches are distributed among these distances:
46 3 0.03
47 25 0.25
48 6 0.06
49 31 0.30
50 33 0.32
51 3 0.03
52 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (47 bp):
ATGTCCCAGACATGGTCTTACATTGACTCATCAATCAAGTCGACGAC
Found at i:73096180 original size:14 final size:14
Alignment explanation
Indices: 73096161--73096187 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
73096151 ATACTTGATT
73096161 TGTTCTTAATTATG
1 TGTTCTTAATTATG
73096175 TGTTCTTAATTAT
1 TGTTCTTAATTAT
73096188 TATTTTAATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.22, C:0.07, G:0.11, T:0.59
Consensus pattern (14 bp):
TGTTCTTAATTATG
Found at i:73105147 original size:14 final size:13
Alignment explanation
Indices: 73105127--73105163 Score: 58
Period size: 14 Copynumber: 2.8 Consensus size: 13
73105117 AATACTTGAT
73105127 TTGTTCTTAATTA
1 TTGTTCTTAATTA
73105140 TGTGTTCTTAATTA
1 T-TGTTCTTAATTA
73105154 TTGTT-TTAAT
1 TTGTTCTTAAT
73105164 ATTCCAGGAT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
12 5 0.22
13 5 0.22
14 13 0.57
ACGTcount: A:0.22, C:0.05, G:0.11, T:0.62
Consensus pattern (13 bp):
TTGTTCTTAATTA
Found at i:73114052 original size:116 final size:120
Alignment explanation
Indices: 73113872--73114092 Score: 301
Period size: 116 Copynumber: 1.9 Consensus size: 120
73113862 CTCCTCGTTC
*
73113872 AAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
1 AAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
* *
73113937 TTTAGTAAC-TCGCACAAATGCCTTCGGG-CTTAACCCGGAATTTAGCAACTCGCA
66 TATAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCGGAATTTAGCAACTCGCA
* **
73113991 AAATGCCTTC-GGACTTAGCCCGGAT-TAGT-ACTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 AAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
* * *
73114052 ATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
65 ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGA
73114093 CATCATTCAA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
115 3 0.03
116 42 0.47
117 22 0.24
118 13 0.14
119 10 0.11
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (120 bp):
AAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
TATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGAATTTAGCAACTCGCA
Found at i:73114092 original size:40 final size:40
Alignment explanation
Indices: 73113871--73114092 Score: 269
Period size: 40 Copynumber: 5.7 Consensus size: 40
73113861 GCTCCTCGTT
* *
73113871 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
73113911 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * *
73113951 CAAATGCCTTCGGG-CTTAACCCGGAATTTAGCAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-ATATAGTAACTCGCA
73113991 -AAATGCCTTC-GGACTTAGCCCGGAT-TAGT-ACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * * *
73114027 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
73114068 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
73114093 CATCATTCAA
Statistics
Matches: 163, Mismatches: 11, Indels: 16
0.86 0.06 0.08
Matches are distributed among these distances:
36 7 0.04
37 16 0.10
38 15 0.09
39 32 0.20
40 82 0.50
41 11 0.07
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:73121811 original size:40 final size:38
Alignment explanation
Indices: 73121767--73121948 Score: 215
Period size: 40 Copynumber: 4.7 Consensus size: 38
73121757 GCTCCTCGTT
* *
73121767 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTC-GGACTTAGCCCGGAT-TAGTAACTCGCA
*
73121807 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTC-GGACTTAGCCCGGA-TTAGTAACTCGCA
*
73121847 CAAATGCCTTCGGACTTAG-CCGGATTAGTATCTCGCA
1 CAAATGCCTTCGGACTTAGCCCGGATTAGTAACTCGCA
* * * *
73121884 CAAATGCCTTCGGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGA-CTTAGCCCGGAT-TAGTAAC-TCGCA
73121925 CAAA-GCCTTCGGACTTAGCCCGGA
1 CAAATGCCTTCGGACTTAGCCCGGA
73121949 CATCATTCAA
Statistics
Matches: 127, Mismatches: 10, Indels: 11
0.86 0.07 0.07
Matches are distributed among these distances:
37 26 0.20
38 10 0.08
39 23 0.18
40 59 0.46
41 9 0.07
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (38 bp):
CAAATGCCTTCGGACTTAGCCCGGATTAGTAACTCGCA
Found at i:73121891 original size:77 final size:79
Alignment explanation
Indices: 73121767--73121944 Score: 220
Period size: 77 Copynumber: 2.3 Consensus size: 79
73121757 GCTCCTCGTT
* *
73121767 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCG
1 CAAATGCCTTC-GGACTTAG-CCGGATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCG
* *
73121831 GATTTAGTAAC-TCGCA
63 GATATAGTAACTTAGCA
* **
73121847 CAAATGCCTTCGGACTTAGCCGGAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGGAT
1 CAAATGCCTTCGGACTTAGCCGGATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGAT
* *
73121911 ATGGTCACTTAGCA
66 ATAGTAACTTAGCA
73121925 CAAA-GCCTTCGGACTTAGCC
1 CAAATGCCTTCGGACTTAGCC
73121945 CGGACATCAT
Statistics
Matches: 87, Mismatches: 9, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
76 3 0.03
77 53 0.61
78 13 0.15
79 7 0.08
80 11 0.13
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGGACTTAGCCGGATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGAT
ATAGTAACTTAGCA
Found at i:73130495 original size:24 final size:24
Alignment explanation
Indices: 73130468--73130513 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
73130458 TTGACTCTAT
73130468 GTTGATTAATTGAAATTTCTTTAG
1 GTTGATTAATTGAAATTTCTTTAG
73130492 GTTGATTAATTGAAATTTCTTT
1 GTTGATTAATTGAAATTTCTTT
73130514 CTAATTAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.28, C:0.04, G:0.15, T:0.52
Consensus pattern (24 bp):
GTTGATTAATTGAAATTTCTTTAG
Found at i:73136901 original size:33 final size:33
Alignment explanation
Indices: 73136859--73136931 Score: 119
Period size: 33 Copynumber: 2.2 Consensus size: 33
73136849 CTGCAACTAT
73136859 GGAGAAGGCCACAAAAGGACCAGAGGGAGATAA
1 GGAGAAGGCCACAAAAGGACCAGAGGGAGATAA
* *
73136892 GGAGAAGGCCACAACAGGACCAGAGGGAGATGA
1 GGAGAAGGCCACAAAAGGACCAGAGGGAGATAA
*
73136925 GAAGAAG
1 GGAGAAG
73136932 ACTGAATCAA
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
33 37 1.00
ACGTcount: A:0.44, C:0.15, G:0.38, T:0.03
Consensus pattern (33 bp):
GGAGAAGGCCACAAAAGGACCAGAGGGAGATAA
Found at i:73139476 original size:55 final size:54
Alignment explanation
Indices: 73139389--73139622 Score: 191
Period size: 55 Copynumber: 4.4 Consensus size: 54
73139379 ATTAGGGTTT
*
73139389 AAGGATACCATGTAAGACCATGCCAAGGCATGGTAATTGGTAAGGTTTCTAAAGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGG-AATTGGTAAGGTTTCTAAAGC
* * * * *
73139444 AAGGATACCATTTAAGACCATGTCAAGACATGGCATTGATAA-GTTACTATAAGCC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGAATTGGTAAGGTTTCTA-AAG-C
* * * ** *
73139499 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGT--GACTTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGAATTGGTAAGGTTTC-TAAAGC
* * * *
73139552 AATGATACCATGTAAGACCATGTCGAGACATGGGAA-TGGT-ATGTTTC--AA--
1 AAGGATACCATGTAAGACCATGCCAAGACAT-GGAATTGGTAAGGTTTCTAAAGC
*
73139601 AAGGATATCATGTAAGACCATG
1 AAGGATACCATGTAAGACCATG
73139623 ACATGGTAAG
Statistics
Matches: 144, Mismatches: 27, Indels: 22
0.75 0.14 0.11
Matches are distributed among these distances:
49 20 0.14
51 1 0.01
52 3 0.02
53 33 0.23
54 20 0.14
55 63 0.44
56 4 0.03
ACGTcount: A:0.35, C:0.18, G:0.24, T:0.24
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGAATTGGTAAGGTTTCTAAAGC
Found at i:73146357 original size:31 final size:31
Alignment explanation
Indices: 73146319--73146381 Score: 99
Period size: 31 Copynumber: 2.0 Consensus size: 31
73146309 TGGGGCAAAG
73146319 GAAGGACAAGGGCTTCCATGCGATATATTAT
1 GAAGGACAAGGGCTTCCATGCGATATATTAT
** *
73146350 GAAGGACAAGGTTTTCCATGTGATATATTAT
1 GAAGGACAAGGGCTTCCATGCGATATATTAT
73146381 G
1 G
73146382 TGAGCAAAAC
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.32, C:0.13, G:0.25, T:0.30
Consensus pattern (31 bp):
GAAGGACAAGGGCTTCCATGCGATATATTAT
Found at i:73149320 original size:26 final size:26
Alignment explanation
Indices: 73149284--73149335 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
73149274 AACCAAGAGC
*
73149284 TAGCAACTGAAAGAATAGAAGGAGGG
1 TAGCAAATGAAAGAATAGAAGGAGGG
73149310 TAGCAAATGAAAGAATAGAAGGAGGG
1 TAGCAAATGAAAGAATAGAAGGAGGG
73149336 AAACATGGTA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.48, C:0.06, G:0.35, T:0.12
Consensus pattern (26 bp):
TAGCAAATGAAAGAATAGAAGGAGGG
Found at i:73152113 original size:43 final size:41
Alignment explanation
Indices: 73152002--73152156 Score: 139
Period size: 42 Copynumber: 3.7 Consensus size: 41
73151992 TTAGGGTTAT
* **
73152002 TGAGATTCTGTATAAGACCATATCTGGGATATGGCATCGGCA
1 TGAGATT-TGTATAAGACCATATCTGGGACATGGCATCGAAA
* * *** *
73152044 TGTGATTTCGTGTAAGACCCCGTCTGGGACATGGCTTCGAAAA
1 TGAGATTT-GTATAAGACCATATCTGGGACATGGCATCG-AAA
* *
73152087 TGAGACTTTGTATAAGACCATATCTGGGATATGGCATCGATA
1 TGAGA-TTTGTATAAGACCATATCTGGGACATGGCATCGAAA
* * *
73152129 TGAGACATTGTGTAAGACCATAACTGGG
1 TGAGA-TTTGTATAAGACCATATCTGGG
73152157 CTATTGGCTT
Statistics
Matches: 90, Mismatches: 20, Indels: 6
0.78 0.17 0.05
Matches are distributed among these distances:
41 1 0.01
42 57 0.63
43 29 0.32
44 3 0.03
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (41 bp):
TGAGATTTGTATAAGACCATATCTGGGACATGGCATCGAAA
Found at i:73152145 original size:42 final size:42
Alignment explanation
Indices: 73152014--73152208 Score: 169
Period size: 43 Copynumber: 4.6 Consensus size: 42
73152004 AGATTCTGTA
** *
73152014 TAAGACCATATCTGGGATATGGCATCGGCATGTGA-TTTCGTG
1 TAAGACCATATCTGGGATATGGCATCGATATGAGACTTT-GTG
*** * * * *
73152056 TAAGACCCCGTCTGGGACATGGCTTCGAAAATGAGACTTTGTA
1 TAAGACCATATCTGGGATATGGCATCG-ATATGAGACTTTGTG
*
73152099 TAAGACCATATCTGGGATATGGCATCGATATGAGACATTGTG
1 TAAGACCATATCTGGGATATGGCATCGATATGAGACTTTGTG
* * * * ***
73152141 TAAGACCATAACTGGGCTATTGGCTTCGATATGTGA-TCCCATG
1 TAAGACCATATCTGGGATA-TGGCATCGATATGAGACT-TTGTG
*
73152184 TAAGACCATATCTAGGATATGGCAT
1 TAAGACCATATCTGGGATATGGCAT
73152209 TGGCATCTTA
Statistics
Matches: 120, Mismatches: 29, Indels: 8
0.76 0.18 0.05
Matches are distributed among these distances:
42 56 0.47
43 61 0.51
44 3 0.03
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (42 bp):
TAAGACCATATCTGGGATATGGCATCGATATGAGACTTTGTG
Found at i:73152156 original size:85 final size:86
Alignment explanation
Indices: 73152002--73152208 Score: 217
Period size: 85 Copynumber: 2.4 Consensus size: 86
73151992 TTAGGGTTAT
* * * * **
73152002 TGAGATTCTGTATAAGACCATATCTGGGATATGGCATCGGCATGTGATTTCGTGTAAGACCCCGT
1 TGAGATTCTGTATAAGACCATATCTGGGATATGGCATCGACATGAGAATTCGTGTAAGACCACAA
73152067 CTGGGAC-A-TGGCTTCGAAAA
66 CTGGG-CTATTGGCTTCGAAAA
* *
73152087 TGAGACTT-TGTATAAGACCATATCTGGGATATGGCATCGATATGAGACATT-GTGTAAGACCAT
1 TGAGA-TTCTGTATAAGACCATATCTGGGATATGGCATCGACATGAGA-ATTCGTGTAAGACCAC
*
73152150 AACTGGGCTATTGGCTTCG-ATA
64 AACTGGGCTATTGGCTTCGAAAA
* * ** * *
73152172 TGTGATCCCATGTAAGACCATATCTAGGATATGGCAT
1 TGAGATTCTGTATAAGACCATATCTGGGATATGGCAT
73152209 TGGCATCTTA
Statistics
Matches: 102, Mismatches: 15, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
84 2 0.02
85 88 0.86
86 12 0.12
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.29
Consensus pattern (86 bp):
TGAGATTCTGTATAAGACCATATCTGGGATATGGCATCGACATGAGAATTCGTGTAAGACCACAA
CTGGGCTATTGGCTTCGAAAA
Found at i:73153958 original size:18 final size:19
Alignment explanation
Indices: 73153934--73153971 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
73153924 GCAAGGCTAA
*
73153934 AAAAAATTACTAAGGCAAT
1 AAAAATTTACTAAGGCAAT
73153953 AAAAATTTTACTAAGGCAA
1 AAAAA-TTTACTAAGGCAA
73153972 ATGATCATTC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.55, C:0.11, G:0.11, T:0.24
Consensus pattern (19 bp):
AAAAATTTACTAAGGCAAT
Found at i:73154889 original size:14 final size:15
Alignment explanation
Indices: 73154862--73154891 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
73154852 CTACACGATG
73154862 TTTCTTCGTCCTCCT
1 TTTCTTCGTCCTCCT
73154877 TTTCTTC-TCCTCCT
1 TTTCTTCGTCCTCCT
73154891 T
1 T
73154892 CTTTCATTTC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.53
15 7 0.47
ACGTcount: A:0.00, C:0.40, G:0.03, T:0.57
Consensus pattern (15 bp):
TTTCTTCGTCCTCCT
Found at i:73169615 original size:30 final size:30
Alignment explanation
Indices: 73169574--73169645 Score: 108
Period size: 30 Copynumber: 2.4 Consensus size: 30
73169564 CATACAGCCA
*
73169574 TGTCACCAAGCCGTGTGTGTCACACGACCG
1 TGTCACCAAGCCATGTGTGTCACACGACCG
* *
73169604 TGTCTCCAAGCCATGTGTGTCATACGACCG
1 TGTCACCAAGCCATGTGTGTCACACGACCG
*
73169634 TGTCGCCAAGCC
1 TGTCACCAAGCC
73169646 TAGGTGTAAC
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 38 1.00
ACGTcount: A:0.19, C:0.33, G:0.25, T:0.22
Consensus pattern (30 bp):
TGTCACCAAGCCATGTGTGTCACACGACCG
Found at i:73181915 original size:41 final size:40
Alignment explanation
Indices: 73181862--73182031 Score: 161
Period size: 41 Copynumber: 4.2 Consensus size: 40
73181852 AGTCCGACTC
*
73181862 TTAG-CACCGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
1 TTAGACACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
* * *
73181901 TTAGACTACTGGCTCGAAGGCCCTTCG-GAACTAAG-TCCGG-
1 TTAGAC-ACTGGCTCAAAAGCCCTTCGAG-ACCAAGCT-CGGA
* * *
73181941 TTATGACACTGGCTCTAAAAAGCCCTTCGAAACTAAGTTCGGTTA
1 TTA-GACACTGGCTC--AAAAGCCCTTCGAGACCAAGCTCGG--A
73181986 TTAG-CACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
1 TTAGACACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
73182025 TTTAGAC
1 -TTAGAC
73182032 CCCGATTAGC
Statistics
Matches: 107, Mismatches: 10, Indels: 26
0.75 0.07 0.18
Matches are distributed among these distances:
39 5 0.05
40 18 0.17
41 51 0.48
42 19 0.18
43 10 0.09
44 1 0.01
45 3 0.03
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (40 bp):
TTAGACACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
Found at i:73190249 original size:41 final size:40
Alignment explanation
Indices: 73190196--73190365 Score: 161
Period size: 41 Copynumber: 4.2 Consensus size: 40
73190186 AGTCCGACTC
*
73190196 TTAG-CACCGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
1 TTAGACACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
* * *
73190235 TTAGACTACTGGCTCGAAGGCCCTTCG-GAACTAAG-TCCGG-
1 TTAGAC-ACTGGCTCAAAAGCCCTTCGAG-ACCAAGCT-CGGA
* * *
73190275 TTATGACACTGGCTCTAAAAAGCCCTTCGAAACTAAGTTCGGTTA
1 TTA-GACACTGGCTC--AAAAGCCCTTCGAGACCAAGCTCGG--A
73190320 TTAG-CACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
1 TTAGACACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
73190359 TTTAGAC
1 -TTAGAC
73190366 CCCGATTAGC
Statistics
Matches: 107, Mismatches: 10, Indels: 26
0.75 0.07 0.18
Matches are distributed among these distances:
39 5 0.05
40 18 0.17
41 51 0.48
42 19 0.18
43 10 0.09
44 1 0.01
45 3 0.03
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (40 bp):
TTAGACACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
Found at i:73194183 original size:40 final size:39
Alignment explanation
Indices: 73194130--73194230 Score: 132
Period size: 40 Copynumber: 2.5 Consensus size: 39
73194120 ACTGAAGTGA
* *
73194130 AAACAAGGGCACAGATGTGCATTTAGGGGTACCAAAGTAC
1 AAAC-AGGGCACAGATGTGCATTCAAGGGTACCAAAGTAC
*
73194170 AAACAGGGCCACAGATGTGCATTCAAGGGTACCGAAGTAC
1 AAACAGGG-CACAGATGTGCATTCAAGGGTACCAAAGTAC
73194210 AAACAGGGACACTA-ATGTGCA
1 AAACAGGG-CAC-AGATGTGCA
73194231 AACATGGACA
Statistics
Matches: 55, Mismatches: 4, Indels: 4
0.87 0.06 0.06
Matches are distributed among these distances:
39 4 0.07
40 50 0.91
41 1 0.02
ACGTcount: A:0.38, C:0.20, G:0.27, T:0.16
Consensus pattern (39 bp):
AAACAGGGCACAGATGTGCATTCAAGGGTACCAAAGTAC
Found at i:73196455 original size:16 final size:16
Alignment explanation
Indices: 73196436--73196467 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
73196426 AATTGTTTTA
73196436 TTACAAAATTTCACTT
1 TTACAAAATTTCACTT
*
73196452 TTACATAATTTCACTT
1 TTACAAAATTTCACTT
73196468 ACTCCATTCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.34, C:0.19, G:0.00, T:0.47
Consensus pattern (16 bp):
TTACAAAATTTCACTT
Found at i:73197611 original size:37 final size:37
Alignment explanation
Indices: 73197557--73197659 Score: 179
Period size: 37 Copynumber: 2.8 Consensus size: 37
73197547 CGAATAGTCC
*
73197557 CCACACGTAGTTATCGGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
* *
73197594 CCATACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
73197631 CCACACGTAGTCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
73197660 ATATATTTCC
Statistics
Matches: 62, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 62 1.00
ACGTcount: A:0.24, C:0.31, G:0.20, T:0.24
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:73197883 original size:48 final size:48
Alignment explanation
Indices: 73197829--73198106 Score: 376
Period size: 48 Copynumber: 5.5 Consensus size: 48
73197819 CTAGCCGAAT
*
73197829 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTTA
1 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
* * *
73197877 CACTAGCCATTCTGCTTTACCACGTATACATATCTCATACATAGTTCA
1 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
73197925 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
1 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
*
73197973 CATTAGCCATTCGGCTTTACCACATATACATATCTACATATACATATCTCATACATA
1 CACTAGCCATTCGGCTTTACCACATATACATATCT-C--ATACATAT-T--T-C--A
73198030 TTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
1 ---CAC--TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
*
73198083 CATTAGCCATTCGGCTTTACCACA
1 CACTAGCCATTCGGCTTTACCACA
73198107 CACATATATA
Statistics
Matches: 206, Mismatches: 10, Indels: 28
0.84 0.04 0.11
Matches are distributed among these distances:
48 144 0.70
49 1 0.00
50 2 0.01
51 8 0.04
52 1 0.00
53 1 0.00
54 1 0.00
55 2 0.01
56 1 0.00
57 1 0.00
58 1 0.00
59 8 0.04
60 2 0.01
61 1 0.00
62 32 0.16
ACGTcount: A:0.31, C:0.28, G:0.07, T:0.34
Consensus pattern (48 bp):
CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
Found at i:73198013 original size:14 final size:14
Alignment explanation
Indices: 73197994--73198025 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
73197984 CGGCTTTACC
73197994 ACATATACATATCT
1 ACATATACATATCT
73198008 ACATATACATATCT
1 ACATATACATATCT
73198022 -CATA
1 ACATA
73198026 CATATTTCAC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 4 0.22
14 14 0.78
ACGTcount: A:0.44, C:0.22, G:0.00, T:0.34
Consensus pattern (14 bp):
ACATATACATATCT
Found at i:73198019 original size:62 final size:62
Alignment explanation
Indices: 73197946--73198073 Score: 249
Period size: 62 Copynumber: 2.1 Consensus size: 62
73197936 CGGCTTTACC
73197946 ACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCT
1 ACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCT
73198008 ACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCT
1 ACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCT
73198070 -CATA
1 ACATA
73198074 CATATTTCAC
Statistics
Matches: 66, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
61 4 0.06
62 62 0.94
ACGTcount: A:0.34, C:0.26, G:0.05, T:0.35
Consensus pattern (62 bp):
ACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCT
Found at i:73198025 original size:110 final size:110
Alignment explanation
Indices: 73197901--73198106 Score: 394
Period size: 110 Copynumber: 1.9 Consensus size: 110
73197891 CTTTACCACG
73197901 TATACATATCTCATACATAGTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACA
1 TATACATATCTCATACATAGTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACA
73197966 TATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTACA
66 TATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTACA
* *
73198011 TATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACA
1 TATACATATCTCATACATAGTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACA
73198076 TATTTCACATTAGCCATTCGGCTTTACCACA
66 TATTTCACATTAGCCATTCGGCTTTACCACA
73198107 CACATATATA
Statistics
Matches: 94, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
110 94 1.00
ACGTcount: A:0.32, C:0.27, G:0.06, T:0.34
Consensus pattern (110 bp):
TATACATATCTCATACATAGTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACA
TATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTACA
Found at i:73200584 original size:50 final size:50
Alignment explanation
Indices: 73200428--73200753 Score: 323
Period size: 50 Copynumber: 6.5 Consensus size: 50
73200418 GGGTGTCACA
* * * * *
73200428 TGCACTTAGTACTACACACATGACTTAACCATCTGATACACGTAGTAGCC
1 TGCACTTAGTACTACACACGTGACCTATCAATCTGGTACACGTAGTAGCC
* * * * * * *
73200478 TGCACCTAGTACTACACACGTGATCAAGGTTAA-CGGGTACGCATAGTAGCC
1 TGCACTTAGTACTACACACGTGACCTA--TCAATCTGGTACACGTAGTAGCC
* *
73200529 TGCACTTAGTACTACACAGGCGACCTATCAATCTGGTACACGTAGTAGCC
1 TGCACTTAGTACTACACACGTGACCTATCAATCTGGTACACGTAGTAGCC
** * * * *
73200579 TGCACTTAGTACTACACACGTGATTTAACCATCTGATACACGTAATAGCC
1 TGCACTTAGTACTACACACGTGACCTATCAATCTGGTACACGTAGTAGCC
* *** * * * *
73200629 TGCACTTAGTACTACAGACGTGATAGAAGTTAA-CGGGTACGCATAGTAGCC
1 TGCACTTAGTACTACACACGTGA-CCTA-TCAATCTGGTACACGTAGTAGCC
* * *
73200680 TGCATTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGCC
1 TGCACTTAGTACTACACACGTGACCTATCAATCTGGTACACGTAGTAGCC
73200730 TGCACTTAGTACTACACACGTGAC
1 TGCACTTAGTACTACACACGTGAC
73200754 TCACAATGGA
Statistics
Matches: 215, Mismatches: 55, Indels: 12
0.76 0.20 0.04
Matches are distributed among these distances:
49 6 0.03
50 138 0.64
51 69 0.32
52 2 0.01
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (50 bp):
TGCACTTAGTACTACACACGTGACCTATCAATCTGGTACACGTAGTAGCC
Found at i:73200668 original size:101 final size:101
Alignment explanation
Indices: 73200563--73200752 Score: 272
Period size: 101 Copynumber: 1.9 Consensus size: 101
73200553 CTATCAATCT
* * ** *
73200563 GGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGATTTAACCATCTGATACACGTAATAGC
1 GGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCTAACAATCTGATACACGTAATAGC
*
73200628 CTGCACTTAGTACTACAGACGTGATAGAAGTTAACG
66 CTGCACTTAGTACTACACACGTGATAGAAGTTAACG
* * * * * *
73200664 GGTACGCATAGTAGCCTGCATTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
1 GGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCTAACAATCTGATACACGTAATAGC
73200729 CTGCACTTAGTACTACACACGTGA
66 CTGCACTTAGTACTACACACGTGA
73200753 CTCACAATGG
Statistics
Matches: 77, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
101 77 1.00
ACGTcount: A:0.30, C:0.24, G:0.20, T:0.26
Consensus pattern (101 bp):
GGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCTAACAATCTGATACACGTAATAGC
CTGCACTTAGTACTACACACGTGATAGAAGTTAACG
Found at i:73200703 original size:151 final size:151
Alignment explanation
Indices: 73200428--73200754 Score: 566
Period size: 151 Copynumber: 2.2 Consensus size: 151
73200418 GGGTGTCACA
* *
73200428 TGCACTTAGTACTACACACATGACTTAACCATCTGATACACGTAGTAGCCTGCACCTAGTACTAC
1 TGCACTTAGTACTACACACGTGACTTAACCATCTGATACACGTAATAGCCTGCACCTAGTACTAC
*
73200493 ACACGTGATCAAGGTTAACGGGTACGCATAGTAGCCTGCACTTAGTACTACACAGGCGACCTATC
66 ACACGTGATCAAAGTTAACGGGTACGCATAGTAGCCTGCACTTAGTACTACACAGGCGACCTATC
73200558 AATCTGGTACACGTAGTAGCC
131 AATCTGGTACACGTAGTAGCC
* *
73200579 TGCACTTAGTACTACACACGTGATTTAACCATCTGATACACGTAATAGCCTGCACTTAGTACTAC
1 TGCACTTAGTACTACACACGTGACTTAACCATCTGATACACGTAATAGCCTGCACCTAGTACTAC
* * *
73200644 AGACGTGAT-AGAAGTTAACGGGTACGCATAGTAGCCTGCATTTAGTACTACACATGCGACCTAT
66 ACACGTGATCA-AAGTTAACGGGTACGCATAGTAGCCTGCACTTAGTACTACACAGGCGACCTAT
73200708 CAATCTGGTACACGTAGTAGCC
130 CAATCTGGTACACGTAGTAGCC
73200730 TGCACTTAGTACTACACACGTGACT
1 TGCACTTAGTACTACACACGTGACT
73200755 CACAATGGAT
Statistics
Matches: 166, Mismatches: 9, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
150 1 0.01
151 165 0.99
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (151 bp):
TGCACTTAGTACTACACACGTGACTTAACCATCTGATACACGTAATAGCCTGCACCTAGTACTAC
ACACGTGATCAAAGTTAACGGGTACGCATAGTAGCCTGCACTTAGTACTACACAGGCGACCTATC
AATCTGGTACACGTAGTAGCC
Found at i:73216221 original size:11 final size:11
Alignment explanation
Indices: 73216192--73216224 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
73216182 AATTACACGG
73216192 ATAATTTTAAA
1 ATAATTTTAAA
73216203 AT--TTTTAAA
1 ATAATTTTAAA
73216212 ATAATTTTAAA
1 ATAATTTTAAA
73216223 AT
1 AT
73216225 TTCAAAATAT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
9 9 0.45
11 11 0.55
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (11 bp):
ATAATTTTAAA
Found at i:73216233 original size:19 final size:19
Alignment explanation
Indices: 73216192--73216252 Score: 79
Period size: 20 Copynumber: 3.1 Consensus size: 19
73216182 AATTACACGG
*
73216192 ATAATTTTAAAATTTTTAAA
1 ATAATTTTAAAA-TTTCAAA
73216212 ATAATTTTAAAATTTCAAA
1 ATAATTTTAAAATTTCAAA
73216231 AT-ATTTATAAAAATTTCAAA
1 ATAATTT-T-AAAATTTCAAA
73216251 AT
1 AT
73216253 TTATATATTT
Statistics
Matches: 38, Mismatches: 1, Indels: 4
0.88 0.02 0.09
Matches are distributed among these distances:
18 4 0.11
19 9 0.24
20 25 0.66
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.44
Consensus pattern (19 bp):
ATAATTTTAAAATTTCAAA
Found at i:73216265 original size:28 final size:28
Alignment explanation
Indices: 73216194--73216254 Score: 79
Period size: 28 Copynumber: 2.2 Consensus size: 28
73216184 TTACACGGAT
* *
73216194 AATTTTAAAATTTTTAAAATAATTTTAA
1 AATTTCAAAATTTTTAAAATAATTTCAA
*
73216222 AATTTCAAAATATTTATAAA-AATTTCAA
1 AATTTCAAAATTTTTA-AAATAATTTCAA
73216250 AATTT
1 AATTT
73216255 ATATATTTTT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
28 26 0.90
29 3 0.10
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (28 bp):
AATTTCAAAATTTTTAAAATAATTTCAA
Found at i:73216277 original size:26 final size:26
Alignment explanation
Indices: 73216231--73216283 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
73216221 AAATTTCAAA
* *
73216231 ATATTTATAAAAATTTCAAAATTTAT
1 ATATTTATAAAAATATCAAAAATTAT
*
73216257 ATATTTTTAACAAATAT-AAAAATTAT
1 ATATTTATAA-AAATATCAAAAATTAT
73216283 A
1 A
73216284 AAAAAATCTT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 18 0.78
27 5 0.22
ACGTcount: A:0.53, C:0.04, G:0.00, T:0.43
Consensus pattern (26 bp):
ATATTTATAAAAATATCAAAAATTAT
Found at i:73216757 original size:20 final size:20
Alignment explanation
Indices: 73216718--73216758 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
73216708 CAACCCTCTA
* **
73216718 CCACCACCACCACCTTCAAC
1 CCACCACCACCAACACCAAC
73216738 CCACCACCACCAACACCAAC
1 CCACCACCACCAACACCAAC
73216758 C
1 C
73216759 ACTGAACATC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.34, C:0.61, G:0.00, T:0.05
Consensus pattern (20 bp):
CCACCACCACCAACACCAAC
Found at i:73218931 original size:18 final size:18
Alignment explanation
Indices: 73218910--73218959 Score: 100
Period size: 18 Copynumber: 2.8 Consensus size: 18
73218900 TTATTATTAA
73218910 ATATAATTTAATAATAAT
1 ATATAATTTAATAATAAT
73218928 ATATAATTTAATAATAAT
1 ATATAATTTAATAATAAT
73218946 ATATAATTTAATAA
1 ATATAATTTAATAA
73218960 CATTCTTAAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 32 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (18 bp):
ATATAATTTAATAATAAT
Found at i:73219517 original size:14 final size:15
Alignment explanation
Indices: 73219488--73219520 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
73219478 TGCACATATA
73219488 TTTTTATGCTTAATT
1 TTTTTATGCTTAATT
*
73219503 TTTTTATG-TTTATT
1 TTTTTATGCTTAATT
73219517 TTTT
1 TTTT
73219521 GTTAATAGTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 9 0.53
15 8 0.47
ACGTcount: A:0.15, C:0.03, G:0.06, T:0.76
Consensus pattern (15 bp):
TTTTTATGCTTAATT
Found at i:73224191 original size:42 final size:42
Alignment explanation
Indices: 73224145--73224226 Score: 119
Period size: 42 Copynumber: 2.0 Consensus size: 42
73224135 ATGTATATAT
* *
73224145 ATATATAGCCGAAGCTATCTCAATCTCTCACACTAAGTGCAA
1 ATATATAACCGAAGCTATCTCAATCTCGCACACTAAGTGCAA
* * *
73224187 ATATATAACTGAAGCTATCTCGATTTCGCACACTAAGTGC
1 ATATATAACCGAAGCTATCTCAATCTCGCACACTAAGTGC
73224227 CCTATTAACT
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 35 1.00
ACGTcount: A:0.34, C:0.24, G:0.13, T:0.28
Consensus pattern (42 bp):
ATATATAACCGAAGCTATCTCAATCTCGCACACTAAGTGCAA
Found at i:73226364 original size:2 final size:2
Alignment explanation
Indices: 73226357--73226390 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
73226347 CAAAATAAAA
73226357 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
73226391 CTCTATTCAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:73227796 original size:25 final size:26
Alignment explanation
Indices: 73227746--73227798 Score: 67
Period size: 25 Copynumber: 2.1 Consensus size: 26
73227736 CTTCATTTCC
73227746 TCTCATCATTCACTAACCTCTCATTT
1 TCTCATCATTCACTAACCTCTCATTT
73227772 TCTC-TCATTCA-TAAGCC-CTCTATTT
1 TCTCATCATTCACTAA-CCTCTC-ATTT
73227797 TC
1 TC
73227799 CCCTTCATTT
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
24 6 0.24
25 15 0.60
26 4 0.16
ACGTcount: A:0.21, C:0.34, G:0.02, T:0.43
Consensus pattern (26 bp):
TCTCATCATTCACTAACCTCTCATTT
Found at i:73230127 original size:46 final size:46
Alignment explanation
Indices: 73230026--73230114 Score: 142
Period size: 46 Copynumber: 1.9 Consensus size: 46
73230016 TGTAACCCGC
* *
73230026 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGCTCACAT
* *
73230072 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGCTCA
73230115 ACCATCCTAG
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 39 1.00
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGCTCACAT
Found at i:73231609 original size:20 final size:21
Alignment explanation
Indices: 73231584--73231623 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
73231574 TTCTTAAAAT
73231584 AGGGC-ACACGCCAGTGTGGA
1 AGGGCAACACGCCAGTGTGGA
*
73231604 AGGGCAACACGCCCGTGTGG
1 AGGGCAACACGCCAGTGTGG
73231624 TCATTATAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.23, C:0.28, G:0.40, T:0.10
Consensus pattern (21 bp):
AGGGCAACACGCCAGTGTGGA
Found at i:73232791 original size:47 final size:48
Alignment explanation
Indices: 73232719--73233033 Score: 208
Period size: 47 Copynumber: 6.6 Consensus size: 48
73232709 GGTATAATGC
* *
73232719 CGATGCTATGTCCCAGACATAGTCTTACACTGGCTCATC-CATC-AAGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTC-TCACATCGAAGT
* * * * *
73232766 CGATGCCATGTCCCAAACATGGTCTTACACTGACTATCGAAATCGAGGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTC-ACATCGAAGT
* * * *
73232815 CGACGCCATGT-TCAGGACATGGTCTTACACTAGCTCTCACATACCCG-TGT
1 CGATGCCATGTCCCA-GACATGGTCTTACACTGGCTCTCACAT---CGAAGT
* * * * * *
73232865 CGATGCCATGTTCCAGATATGGTTTTACACT-G-ACACATC-TCGTAG-
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCA-CATCGAAGT
* ** * *
73232910 CTGATG-CATGTCCCATACAT-GTCTTACACTGGCTCTCGTATCAAAGC
1 C-GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCACATCGAAGT
* * * *
73232957 CAATGCCATGTCCCATACATGGTCTTACACTGGCTCTCATAAT-GTAG-
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCA-CATCGAAGT
73233004 CTGATG-CATGTCCCAGACAT-GTCTTACACT
1 C-GATGCCATGTCCCAGACATGGTCTTACACT
73233034 AGCACACAAA
Statistics
Matches: 210, Mismatches: 39, Indels: 39
0.73 0.14 0.14
Matches are distributed among these distances:
44 9 0.04
45 15 0.07
46 26 0.12
47 60 0.29
48 34 0.16
49 36 0.17
50 26 0.12
51 4 0.02
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (48 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCACATCGAAGT
Found at i:73240553 original size:48 final size:44
Alignment explanation
Indices: 73240439--73240610 Score: 139
Period size: 48 Copynumber: 3.7 Consensus size: 44
73240429 CGAGGCTAAC
** *
73240439 GCCATGTCCCAAACATGGTCTTATGCTAACTCTCACATATCTGTGCCGAT
1 GCCATGTCCCAAACAT-GTCTTA--C--ACTGGCACATCT-TGTGCCGAT
* * *
73240489 GCCATGTCCCAGACATGATCTTACACTGGCACCTCTATATGTGACGAT
1 GCCATGTCCCAAACATG-TCTTACACTGGCACATC--T-TGTGCCGAT
* ** *
73240537 GCCATGTCCCAAACATGGTGTTACACTAACACATCTCGTAGCCGAT
1 GCCATGTCCCAAACAT-GTCTTACACTGGCACATCTTGT-GCCGAT
73240583 G-CATGTCCCAAACATGTCTTACACTGGC
1 GCCATGTCCCAAACATGTCTTACACTGGC
73240611 TTTCGTCTCA
Statistics
Matches: 100, Mismatches: 17, Indels: 16
0.75 0.13 0.12
Matches are distributed among these distances:
44 10 0.10
45 16 0.16
46 14 0.14
48 38 0.38
49 2 0.02
50 20 0.20
ACGTcount: A:0.26, C:0.30, G:0.17, T:0.27
Consensus pattern (44 bp):
GCCATGTCCCAAACATGTCTTACACTGGCACATCTTGTGCCGAT
Found at i:73250483 original size:18 final size:17
Alignment explanation
Indices: 73250457--73250490 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
73250447 CATATCGTGG
73250457 GCCCATGTGGGCCCACAC
1 GCCCATGT-GGCCCACAC
*
73250475 GCCCGTGTGGCCCACA
1 GCCCATGTGGCCCACA
73250491 TAGCCCAAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.15, C:0.44, G:0.29, T:0.12
Consensus pattern (17 bp):
GCCCATGTGGCCCACAC
Found at i:73258481 original size:18 final size:17
Alignment explanation
Indices: 73258455--73258488 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
73258445 CATATCGAGG
73258455 GCCCATGTGGGCCCACAC
1 GCCCATGT-GGCCCACAC
*
73258473 GCCCGTGTGGCCCACA
1 GCCCATGTGGCCCACA
73258489 TAGCCCAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.15, C:0.44, G:0.29, T:0.12
Consensus pattern (17 bp):
GCCCATGTGGCCCACAC
Found at i:73258824 original size:41 final size:41
Alignment explanation
Indices: 73258779--73258861 Score: 166
Period size: 41 Copynumber: 2.0 Consensus size: 41
73258769 GGCCAAGAGT
73258779 AAATACTCAAAATTTGAGGGATTAAAGTGTAAATATGAAAA
1 AAATACTCAAAATTTGAGGGATTAAAGTGTAAATATGAAAA
73258820 AAATACTCAAAATTTGAGGGATTAAAGTGTAAATATGAAAA
1 AAATACTCAAAATTTGAGGGATTAAAGTGTAAATATGAAAA
73258861 A
1 A
73258862 CTTGAAGGTA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.52, C:0.05, G:0.17, T:0.27
Consensus pattern (41 bp):
AAATACTCAAAATTTGAGGGATTAAAGTGTAAATATGAAAA
Found at i:73259147 original size:29 final size:31
Alignment explanation
Indices: 73259099--73259162 Score: 80
Period size: 29 Copynumber: 2.1 Consensus size: 31
73259089 TTTATAGTTA
*
73259099 TTTAATTAGATAATTGTTATT-TATTTAATAT
1 TTTAATAAGATAATTGTTATTAT-TTTAATAT
*
73259130 TTTAATAAGAT-ATT-TTATTATTTTATTAT
1 TTTAATAAGATAATTGTTATTATTTTAATAT
73259159 TTTA
1 TTTA
73259163 TTTAGTCTAT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
29 16 0.53
30 4 0.13
31 10 0.33
ACGTcount: A:0.34, C:0.00, G:0.05, T:0.61
Consensus pattern (31 bp):
TTTAATAAGATAATTGTTATTATTTTAATAT
Found at i:73259151 original size:8 final size:8
Alignment explanation
Indices: 73259140--73259164 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
73259130 TTTAATAAGA
73259140 TATTTTAT
1 TATTTTAT
73259148 TATTTTAT
1 TATTTTAT
73259156 TATTTTAT
1 TATTTTAT
73259164 T
1 T
73259165 TAGTCTATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (8 bp):
TATTTTAT
Found at i:73269504 original size:18 final size:18
Alignment explanation
Indices: 73269481--73269521 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
73269471 CATAGTAAAA
**
73269481 TAAAACAATAAAAGTAAT
1 TAAAACAATAAAAACAAT
*
73269499 TAAAACCATAAAAACAAT
1 TAAAACAATAAAAACAAT
73269517 TAAAA
1 TAAAA
73269522 GGCCTTATTA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.68, C:0.10, G:0.02, T:0.20
Consensus pattern (18 bp):
TAAAACAATAAAAACAAT
Found at i:73270061 original size:28 final size:27
Alignment explanation
Indices: 73269975--73270065 Score: 119
Period size: 28 Copynumber: 3.2 Consensus size: 27
73269965 GTGACAGAGT
*
73269975 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATAATTTGTGGCA-TGC
* *
73270004 CACAAGAACAGATAATTTGTGGCAGGGC
1 CACCAGAACAGATAATTTGTGGCA-TGC
73270032 CACCAGAACAGATAATTTGTGGCATAGC
1 CACCAGAACAGATAATTTGTGGCAT-GC
73270060 CACCAG
1 CACCAG
73270066 GACGCTTCGT
Statistics
Matches: 56, Mismatches: 5, Indels: 3
0.88 0.08 0.05
Matches are distributed among these distances:
28 50 0.89
29 6 0.11
ACGTcount: A:0.33, C:0.22, G:0.24, T:0.21
Consensus pattern (27 bp):
CACCAGAACAGATAATTTGTGGCATGC
Found at i:73270218 original size:28 final size:28
Alignment explanation
Indices: 73270171--73270235 Score: 94
Period size: 28 Copynumber: 2.3 Consensus size: 28
73270161 AAATTAATCC
* *
73270171 TAGGGGTATAAAGGTCATTTAGCATATA
1 TAGGGGTATAAAGGTAATTTAGCATACA
* *
73270199 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTAGCATACA
73270227 TAGGGGTAT
1 TAGGGGTAT
73270236 TCTAGTAAAT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.32, C:0.06, G:0.28, T:0.34
Consensus pattern (28 bp):
TAGGGGTATAAAGGTAATTTAGCATACA
Found at i:73277831 original size:28 final size:28
Alignment explanation
Indices: 73277783--73277873 Score: 139
Period size: 28 Copynumber: 3.2 Consensus size: 28
73277773 GTGACAGAGT
*
73277783 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATAATTTGTGGCAGTGC
*
73277812 CACCAGAACAGATAATTTGTGGCAGGGC
1 CACCAGAACAGATAATTTGTGGCAGTGC
73277840 CACCAGAACAGATAATTTGTGGCA-TAGC
1 CACCAGAACAGATAATTTGTGGCAGT-GC
73277868 CACCAG
1 CACCAG
73277874 GACGCTTCCT
Statistics
Matches: 58, Mismatches: 3, Indels: 3
0.91 0.05 0.05
Matches are distributed among these distances:
28 51 0.88
29 7 0.12
ACGTcount: A:0.32, C:0.23, G:0.24, T:0.21
Consensus pattern (28 bp):
CACCAGAACAGATAATTTGTGGCAGTGC
Found at i:73278026 original size:28 final size:28
Alignment explanation
Indices: 73277979--73278043 Score: 103
Period size: 28 Copynumber: 2.3 Consensus size: 28
73277969 AAATTAACCC
*
73277979 TAGGGGTATAAAGGTCATTTAGCATACA
1 TAGGGGTATAAAGGTAATTTAGCATACA
* *
73278007 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTAGCATACA
73278035 TAGGGGTAT
1 TAGGGGTAT
73278044 TCTAGTAAAT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.32, C:0.08, G:0.28, T:0.32
Consensus pattern (28 bp):
TAGGGGTATAAAGGTAATTTAGCATACA
Found at i:73281247 original size:38 final size:38
Alignment explanation
Indices: 73281172--73281307 Score: 157
Period size: 38 Copynumber: 3.5 Consensus size: 38
73281162 GAATCCAATC
* * * * *
73281172 ACCAGCACAAAACCTGTGGGACTTTAAGCTCGGATATAGT
1 ACCAGCACTAAGCCTGCGGGA-TTTAA-CCCGGATATAAT
73281212 ACCAGCACTAAGCCTGCGGGATTTAACCCGGATATAAT
1 ACCAGCACTAAGCCTGCGGGATTTAACCCGGATATAAT
* * *
73281250 ACAAGCACGAAGCTTGCGGGATTTAACCCGGATATAAT
1 ACCAGCACTAAGCCTGCGGGATTTAACCCGGATATAAT
*
73281288 TCCAGCA-TATAGCCTGCGGG
1 ACCAGCACTA-AGCCTGCGGG
73281308 TCTTTAAGCT
Statistics
Matches: 83, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
37 1 0.01
38 59 0.71
39 5 0.06
40 18 0.22
ACGTcount: A:0.31, C:0.24, G:0.24, T:0.21
Consensus pattern (38 bp):
ACCAGCACTAAGCCTGCGGGATTTAACCCGGATATAAT
Found at i:73285080 original size:39 final size:39
Alignment explanation
Indices: 73285026--73285320 Score: 482
Period size: 39 Copynumber: 7.6 Consensus size: 39
73285016 ATCATAATTG
*
73285026 TATGTGCTGAAATTATATCCGGACTTCAGGTCCGCAGGC
1 TATGTGCTGGAATTATATCCGGACTTCAGGTCCGCAGGC
* * *
73285065 TATGTACTGGAATTATATCCGGACTTCAGGTCAGTAGGC
1 TATGTGCTGGAATTATATCCGGACTTCAGGTCCGCAGGC
73285104 TATGTGCTGGAATTATATCCGGACTTCAGGTCCGCAGGC
1 TATGTGCTGGAATTATATCCGGACTTCAGGTCCGCAGGC
* *
73285143 TATGTGCTGGAATTTTATCCGGACTTCAAGTCCGCAGGC
1 TATGTGCTGGAATTATATCCGGACTTCAGGTCCGCAGGC
* *
73285182 TATGTGCTGGAATTATATCCAGACTTCAGGTCCGCAGGT
1 TATGTGCTGGAATTATATCCGGACTTCAGGTCCGCAGGC
**
73285221 TATGTGCTGGAATTATATCCGGACTTCAGGTCTACAGGC
1 TATGTGCTGGAATTATATCCGGACTTCAGGTCCGCAGGC
*
73285260 TATGTGCTGGAATTTTATCCGGACTTCAGGTCCGCAGGC
1 TATGTGCTGGAATTATATCCGGACTTCAGGTCCGCAGGC
*
73285299 TATGAGCTGGAATTATATCCGG
1 TATGTGCTGGAATTATATCCGG
73285321 GCTTAAATTC
Statistics
Matches: 234, Mismatches: 22, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 234 1.00
ACGTcount: A:0.22, C:0.21, G:0.26, T:0.30
Consensus pattern (39 bp):
TATGTGCTGGAATTATATCCGGACTTCAGGTCCGCAGGC
Found at i:73292956 original size:39 final size:39
Alignment explanation
Indices: 73292902--73293157 Score: 458
Period size: 39 Copynumber: 6.6 Consensus size: 39
73292892 ATCATAATTG
*
73292902 TATGTGCTGAAATTATATCCGGACTTCAGGTCCGCAGGC
1 TATGTGCTGGAATTATATCCGGACTTCAGGTCCGCAGGC
73292941 TATGTGCTGGAATTATATCCGGACTTCAGGTCCGCAGGC
1 TATGTGCTGGAATTATATCCGGACTTCAGGTCCGCAGGC
*
73292980 TATGTGCTGGAATTATATCCGGACTTCAAGTCCGCAGGC
1 TATGTGCTGGAATTATATCCGGACTTCAGGTCCGCAGGC
*
73293019 TATGTGCTGGAATTTTATCCGGACTTCAGGTCCGCAGGC
1 TATGTGCTGGAATTATATCCGGACTTCAGGTCCGCAGGC
*
73293058 TATGTGCTGGAATTATATCCGGACTTCAGGTCTGCAGGC
1 TATGTGCTGGAATTATATCCGGACTTCAGGTCCGCAGGC
*
73293097 TATGTGCTGGAATTTTATCCGGACTTCAGGTCCGCAGGC
1 TATGTGCTGGAATTATATCCGGACTTCAGGTCCGCAGGC
*
73293136 TATGAGCTGGAATTATATCCGG
1 TATGTGCTGGAATTATATCCGG
73293158 CCTTAAATTC
Statistics
Matches: 207, Mismatches: 10, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 207 1.00
ACGTcount: A:0.21, C:0.22, G:0.27, T:0.30
Consensus pattern (39 bp):
TATGTGCTGGAATTATATCCGGACTTCAGGTCCGCAGGC
Found at i:73297672 original size:46 final size:44
Alignment explanation
Indices: 73297607--73297742 Score: 143
Period size: 47 Copynumber: 3.0 Consensus size: 44
73297597 CATATAAGCT
*
73297607 ATTGTGGGCTAGTGTAAGACATGTCTAGGATATGCATCGGCCAC
1 ATTGTGGGCTAGTGTAAGACATGTCTGGGATATGCATCGGCCAC
* *
73297651 ATTGTGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATC-G--TC
1 ATTGTG-G-GCTAGTGTAAGA-CATGTCTGGGATAT-GCATCGGCCAC
73297696 ATTGAGATGGGTGCTAGTGTAAGACATGTCTGGGATATGCATCGGCC
1 ATT--G-T-GG-GCTAGTGTAAGACATGTCTGGGATATGCATCGGCC
73297743 TCGAGATGTA
Statistics
Matches: 76, Mismatches: 5, Indels: 17
0.78 0.05 0.17
Matches are distributed among these distances:
44 6 0.08
45 5 0.07
46 17 0.22
47 28 0.37
48 19 0.25
49 1 0.01
ACGTcount: A:0.24, C:0.17, G:0.32, T:0.27
Consensus pattern (44 bp):
ATTGTGGGCTAGTGTAAGACATGTCTGGGATATGCATCGGCCAC
Found at i:73297760 original size:46 final size:46
Alignment explanation
Indices: 73297614--73297825 Score: 157
Period size: 46 Copynumber: 4.6 Consensus size: 46
73297604 GCTATTGTGG
* * * *
73297614 GCTAGTGTAAGACATGTCTAGGATATGCATCGGCCAC-A-TTGTGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGT-A-A
* * * ***
73297660 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGTCATTGAGATGGGT
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGATGTAA
*
73297708 GCTAGTGTAAGACATGTCTGGGATATGCATCGGCCTCGAGATGTAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTAA
* * * * ** *
73297754 GTTAGTGCACGATATGTCTTAGACATGCATTGG-CTACGAGATGT--
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGATGTAA
73297798 G-TCAGTGTAAGACCATGTCTGGGACATG
1 GCT-AGTGTAAGA-CATGTCTGGGACATG
73297826 GCATTAGCAC
Statistics
Matches: 129, Mismatches: 30, Indels: 15
0.74 0.17 0.09
Matches are distributed among these distances:
43 1 0.01
44 8 0.06
45 14 0.11
46 59 0.46
47 25 0.19
48 19 0.15
49 1 0.01
50 2 0.02
ACGTcount: A:0.25, C:0.17, G:0.30, T:0.27
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTAA
Found at i:73315209 original size:39 final size:41
Alignment explanation
Indices: 73315114--73315297 Score: 215
Period size: 40 Copynumber: 4.6 Consensus size: 41
73315104 TTGAATGCTG
*
73315114 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGT-ACTAATA
* *
73315153 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGGTACTAAT-
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAAGTACTAATA
73315193 TCCGGGCTAAG-CCCGAAGGCATTTGTGCG-AGTTACTAA-A
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAG-TACTAATA
* *
73315232 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACT-ATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTAATA
* *
73315272 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
73315298 AACGAGGAGC
Statistics
Matches: 125, Mismatches: 10, Indels: 19
0.81 0.06 0.12
Matches are distributed among these distances:
38 1 0.01
39 52 0.42
40 59 0.47
41 13 0.10
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (41 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTAATA
Found at i:73315249 original size:79 final size:81
Alignment explanation
Indices: 73315114--73315297 Score: 220
Period size: 79 Copynumber: 2.3 Consensus size: 81
73315104 TTGAATGCTG
73315114 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGACAATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACAATATCCGGACTAAGATCCGAAGGCATT
*
73315177 TGTGCGAGGTACTA-A
66 TGTGCGAAGTACTATA
* * **
73315192 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAA-ATCCGGGTTAAG-TCCCGAAGGC
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGAC-AATATCCGGACTAAGAT-CCGAAGGC
*
73315253 ATTTGTGCGAATTACTATA
63 ATTTGTGCGAAGTACTATA
* *
73315272 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
73315298 AACGAGGAGC
Statistics
Matches: 91, Mismatches: 8, Indels: 11
0.83 0.07 0.10
Matches are distributed among these distances:
78 10 0.11
79 58 0.64
80 23 0.25
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACAATATCCGGACTAAGATCCGAAGGCATT
TGTGCGAAGTACTATA
Found at i:73315319 original size:79 final size:79
Alignment explanation
Indices: 73315166--73315330 Score: 192
Period size: 79 Copynumber: 2.1 Consensus size: 79
73315156 GGACTAAGAT
* * ** *
73315166 CCGAAGGCATTTGTGCGAGGTACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAAGTACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAA
*
73315231 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
73315245 CCGAAGGCATTTGTGCGAATTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGC
1 CCGAAGGCATTTGTGCGAAGTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-C
* *
73315308 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
73315324 CCGAAGG
1 CCGAAGG
73315331 TACGTGATTT
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
78 2 0.03
79 46 0.63
80 25 0.34
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAAGTACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAA
ATCCGGGTTAAATC
Found at i:73323142 original size:41 final size:41
Alignment explanation
Indices: 73323085--73323230 Score: 242
Period size: 41 Copynumber: 3.6 Consensus size: 41
73323075 TACTCGAATG
73323085 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
73323126 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
* * *
73323167 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCT-AGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCTTTTGTGCTAAGCGACT
73323207 ATATCCGGGCTAAGTCCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
73323231 ATTTACGCTA
Statistics
Matches: 98, Mismatches: 5, Indels: 5
0.91 0.05 0.05
Matches are distributed among these distances:
39 1 0.01
40 27 0.28
41 69 0.70
42 1 0.01
ACGTcount: A:0.24, C:0.25, G:0.27, T:0.24
Consensus pattern (41 bp):
ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
Found at i:73324678 original size:39 final size:40
Alignment explanation
Indices: 73324596--73324778 Score: 200
Period size: 39 Copynumber: 4.7 Consensus size: 40
73324586 GCTCCTCGTT
* *
73324596 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAATTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
73324636 CAAATGCCTTCGGGACTTA-ACCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
73324675 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTACCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * *
73324714 CAAATGTCTTC-GGATCTTAGTCCGGATATT-GTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAT-TTAGTAAC-TCGCA
73324755 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
73324779 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 14, Indels: 15
0.81 0.09 0.10
Matches are distributed among these distances:
38 6 0.05
39 71 0.58
40 38 0.31
41 7 0.06
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:73332449 original size:39 final size:40
Alignment explanation
Indices: 73332404--73332571 Score: 97
Period size: 40 Copynumber: 4.2 Consensus size: 40
73332394 CGGGGTTTAG
* * *
73332404 CCGGATATAACCACTCGCA-CAAGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
*** * *
73332443 CCGGATATGGTCACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
** * * * * **
73332483 CCGGATATAGTCGCTAGCACAAATGCCTT-TGGATCTTAGT
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGA-CTTAAC
* ** * * * *
73332523 CCGGATGTAGTCGCTTAGCACAAAAGCCTTCGGGACTTAGC
1 CCGGATATAACCAC-TAGCATAAAGGCCTTCGGGACTTAAC
73332564 CCGGATAT
1 CCGGATAT
73332572 CGTTCGCGTA
Statistics
Matches: 107, Mismatches: 18, Indels: 6
0.82 0.14 0.05
Matches are distributed among these distances:
39 18 0.17
40 60 0.56
41 26 0.24
42 3 0.03
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (40 bp):
CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
Found at i:73332562 original size:41 final size:40
Alignment explanation
Indices: 73332427--73332571 Score: 184
Period size: 40 Copynumber: 3.6 Consensus size: 40
73332417 CTCGCACAAG
* * * * *
73332427 GCCTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
73332467 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* * * *
73332507 GCCTT-TGGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
73332548 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
73332572 CGTTCGCGTA
Statistics
Matches: 90, Mismatches: 12, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
39 3 0.03
40 58 0.64
41 26 0.29
42 3 0.03
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:73338798 original size:14 final size:15
Alignment explanation
Indices: 73338766--73338811 Score: 51
Period size: 14 Copynumber: 3.1 Consensus size: 15
73338756 ATTGTTTACT
*
73338766 TATTATTTA-AGTAAA
1 TATTATTTATA-TTAA
73338781 TATTA-TTATATTAA
1 TATTATTTATATTAA
73338795 TATTATTTTATATTAA
1 TATTA-TTTATATTAA
73338811 T
1 T
73338812 TAAATAAAGT
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
14 11 0.41
15 6 0.22
16 10 0.37
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (15 bp):
TATTATTTATATTAA
Found at i:73338997 original size:13 final size:14
Alignment explanation
Indices: 73338971--73339000 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
73338961 TTTAATAATA
73338971 AAACAAATAAAAAG
1 AAACAAATAAAAAG
73338985 AAACAAA-AAAAAG
1 AAACAAATAAAAAG
73338998 AAA
1 AAA
73339001 GAAAGAAACA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.56
14 7 0.44
ACGTcount: A:0.83, C:0.07, G:0.07, T:0.03
Consensus pattern (14 bp):
AAACAAATAAAAAG
Found at i:73340132 original size:28 final size:23
Alignment explanation
Indices: 73340069--73340112 Score: 88
Period size: 23 Copynumber: 1.9 Consensus size: 23
73340059 TAACCCAAGG
73340069 TAGCCGAATTTCAATGGAATTAA
1 TAGCCGAATTTCAATGGAATTAA
73340092 TAGCCGAATTTCAATGGAATT
1 TAGCCGAATTTCAATGGAATT
73340113 CATATTAGCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (23 bp):
TAGCCGAATTTCAATGGAATTAA
Found at i:73348774 original size:42 final size:42
Alignment explanation
Indices: 73348727--73348809 Score: 121
Period size: 42 Copynumber: 2.0 Consensus size: 42
73348717 AGATTACATG
* *
73348727 TAAGACCACATCTGGTATATGACATCAGTATGAGACTTCGTA
1 TAAGACCACATCTGGGATATGACATCAATATGAGACTTCGTA
* * *
73348769 TAAGACCATATCTGGGATATGGCATCAATATGAGATTTCGT
1 TAAGACCACATCTGGGATATGACATCAATATGAGACTTCGT
73348810 GTAAAAAAAT
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 36 1.00
ACGTcount: A:0.33, C:0.17, G:0.20, T:0.30
Consensus pattern (42 bp):
TAAGACCACATCTGGGATATGACATCAATATGAGACTTCGTA
Found at i:73365765 original size:10 final size:10
Alignment explanation
Indices: 73365744--73365820 Score: 102
Period size: 10 Copynumber: 7.6 Consensus size: 10
73365734 CATGAGATTT
73365744 TGATAT-ACA
1 TGATATGACA
73365753 TGATATGACA
1 TGATATGACA
73365763 TGATATGACA
1 TGATATGACA
73365773 TGATATGACA
1 TGATATGACA
73365783 TGATATGCACA
1 TGATATG-ACA
**
73365794 TGATATGTTA
1 TGATATGACA
*
73365804 TGAGATGCACA
1 TGATATG-ACA
73365815 TGATAT
1 TGATAT
73365821 ACTCATTATA
Statistics
Matches: 59, Mismatches: 6, Indels: 4
0.86 0.09 0.06
Matches are distributed among these distances:
9 6 0.10
10 37 0.63
11 16 0.27
ACGTcount: A:0.38, C:0.10, G:0.19, T:0.32
Consensus pattern (10 bp):
TGATATGACA
Found at i:73365796 original size:21 final size:21
Alignment explanation
Indices: 73365750--73365820 Score: 108
Period size: 21 Copynumber: 3.4 Consensus size: 21
73365740 ATTTTGATAT
73365750 ACATGATATGACATGATATG-
1 ACATGATATGACATGATATGC
73365770 ACATGATATGACATGATATGC
1 ACATGATATGACATGATATGC
** *
73365791 ACATGATATGTTATGAGATGC
1 ACATGATATGACATGATATGC
73365812 ACATGATAT
1 ACATGATAT
73365821 ACTCATTATA
Statistics
Matches: 47, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
20 20 0.43
21 27 0.57
ACGTcount: A:0.38, C:0.11, G:0.20, T:0.31
Consensus pattern (21 bp):
ACATGATATGACATGATATGC
Found at i:73365949 original size:24 final size:25
Alignment explanation
Indices: 73365867--73365937 Score: 133
Period size: 25 Copynumber: 2.8 Consensus size: 25
73365857 GAAGAAGTGC
*
73365867 AAAAGGGCTTTGCCCCAATTAATCA
1 AAAAGGGCTTTGCCCCAGTTAATCA
73365892 AAAAGGGCTTTGCCCCAGTTAATCA
1 AAAAGGGCTTTGCCCCAGTTAATCA
73365917 AAAAGGGCTTTGCCCCAGTTA
1 AAAAGGGCTTTGCCCCAGTTA
73365938 TTAAAAGAGG
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
25 45 1.00
ACGTcount: A:0.32, C:0.24, G:0.20, T:0.24
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTAATCA
Found at i:73374383 original size:24 final size:25
Alignment explanation
Indices: 73374325--73374383 Score: 70
Period size: 24 Copynumber: 2.4 Consensus size: 25
73374315 GGAGGAAGTG
*
73374325 CAAAAG-GGCTTTGCCCCAGTTAAT
1 CAAAAGAGGCTTTGCCCCAATTAAT
73374349 CAAAA-AGGGCTTTGCCCCAATT-AT
1 CAAAAGA-GGCTTTGCCCCAATTAAT
*
73374373 TAAAAGAGGCT
1 CAAAAGAGGCT
73374384 AGGCCTCGAG
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
24 15 0.50
25 15 0.50
ACGTcount: A:0.34, C:0.22, G:0.20, T:0.24
Consensus pattern (25 bp):
CAAAAGAGGCTTTGCCCCAATTAAT
Found at i:73378273 original size:13 final size:13
Alignment explanation
Indices: 73378255--73378288 Score: 50
Period size: 15 Copynumber: 2.5 Consensus size: 13
73378245 GGACATGGCC
73378255 GTGTGGGCAGGCT
1 GTGTGGGCAGGCT
73378268 GTGTGGGGGCAGGCT
1 GTGT--GGGCAGGCT
73378283 GTGTGG
1 GTGTGG
73378289 TCACACACGC
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
13 6 0.32
15 13 0.68
ACGTcount: A:0.06, C:0.12, G:0.59, T:0.24
Consensus pattern (13 bp):
GTGTGGGCAGGCT
Done.