Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 225 of 349
Found at i:73730217 original size:29 final size:29
Alignment explanation
Indices: 73730185--73730240 Score: 85
Period size: 29 Copynumber: 1.9 Consensus size: 29
73730175 TTTGATATAA
73730185 TTTTTTTATAACTTTCCTATTTTCTAACT
1 TTTTTTTATAACTTTCCTATTTTCTAACT
** *
73730214 TTTTTTTATATTTTTGCTATTTTCTAA
1 TTTTTTTATAACTTTCCTATTTTCTAA
73730241 TTAATTTTCC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.20, C:0.12, G:0.02, T:0.66
Consensus pattern (29 bp):
TTTTTTTATAACTTTCCTATTTTCTAACT
Found at i:73730248 original size:29 final size:29
Alignment explanation
Indices: 73730187--73730248 Score: 72
Period size: 29 Copynumber: 2.2 Consensus size: 29
73730177 TGATATAATT
*
73730187 TTTTTATAACTTTCCTATTTTCTAACTTT
1 TTTTTATAACTTTCCTATTTTCTAACTTA
** *
73730216 TTTTTATATTTTTGCTATTTTCTAA-TTA
1 TTTTTATAACTTTCCTATTTTCTAACTTA
*
73730244 ATTTT
1 TTTTT
73730249 CCATTTTCCT
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
28 6 0.21
29 22 0.79
ACGTcount: A:0.21, C:0.11, G:0.02, T:0.66
Consensus pattern (29 bp):
TTTTTATAACTTTCCTATTTTCTAACTTA
Found at i:73743978 original size:16 final size:16
Alignment explanation
Indices: 73743941--73743979 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
73743931 TTTGGTTCAG
*
73743941 TGTAATGGAATAGAGC
1 TGTAATTGAATAGAGC
* *
73743957 TATAATTGAATAGAGT
1 TGTAATTGAATAGAGC
73743973 TGTAATT
1 TGTAATT
73743980 AGTAATTCAA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.38, C:0.03, G:0.23, T:0.36
Consensus pattern (16 bp):
TGTAATTGAATAGAGC
Found at i:73744220 original size:58 final size:58
Alignment explanation
Indices: 73744156--73744281 Score: 173
Period size: 58 Copynumber: 2.2 Consensus size: 58
73744146 ATTTTAAAAG
* * *
73744156 ATTATTATTAAAAATAATTTAATAAAAATAATAAATAGTTTAACCATATT-TTAACATA
1 ATTATTATTAAAAATAATTTAAT-AAAATAATAAATAATTTAACAAAATTCTTAACATA
* * * *
73744214 ATTATTATTAAATATAATTTAATAAAATAATATATAATTTAATAAAATTCTTAATATA
1 ATTATTATTAAAAATAATTTAATAAAATAATAAATAATTTAACAAAATTCTTAACATA
73744272 ATTATTATTA
1 ATTATTATTA
73744282 TATGAATTAA
Statistics
Matches: 60, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
57 21 0.35
58 39 0.65
ACGTcount: A:0.52, C:0.03, G:0.01, T:0.44
Consensus pattern (58 bp):
ATTATTATTAAAAATAATTTAATAAAATAATAAATAATTTAACAAAATTCTTAACATA
Found at i:73744317 original size:58 final size:57
Alignment explanation
Indices: 73744156--73744318 Score: 145
Period size: 58 Copynumber: 2.8 Consensus size: 57
73744146 ATTTTAAAAG
* * * * ** *
73744156 ATTATTATTAAAAATAATTTAATAAAAATAATAAATAGTTTAACCATATT-TTAACATA
1 ATTATTATT-AATATAATTTAA-AAAAATAATATATAATCTAATAAAATTCTTAACATA
* * *
73744214 ATTATTATTAAATATAATTTAATAAAATAATATATAATTTAATAAAATTCTTAATATA
1 ATTATTATT-AATATAATTTAAAAAAATAATATATAATCTAATAAAATTCTTAACATA
73744272 ATTATTATT-ATATGAA-TTAAAAAATCATAATATATAATACT-ATAAAA
1 ATTATTATTAATAT-AATTTAAAAAA--ATAATATATAAT-CTAATAAAA
73744319 ATAATATATA
Statistics
Matches: 90, Mismatches: 10, Indels: 10
0.82 0.09 0.09
Matches are distributed among these distances:
56 11 0.12
57 23 0.26
58 55 0.61
59 1 0.01
ACGTcount: A:0.54, C:0.04, G:0.01, T:0.41
Consensus pattern (57 bp):
ATTATTATTAATATAATTTAAAAAAATAATATATAATCTAATAAAATTCTTAACATA
Found at i:73745154 original size:98 final size:98
Alignment explanation
Indices: 73745031--73745223 Score: 305
Period size: 98 Copynumber: 2.0 Consensus size: 98
73745021 ATATAAAAAT
* * * *
73745031 TTTAAAAGAACATCCACTCGTCCAAGATTTAAGAAACCACACCCAATACGTTAGGGCACGATCCC
1 TTTAAAAAAACATCCACTCATCCAAGATTTAAAAAACCACACCCAATACGTTAGGGCACAATCCC
73745096 TTTAGAATCCCAAACTCAGAATATTTCCTTTAA
66 TTTAGAATCCCAAACTCAGAATATTTCCTTTAA
* * *
73745129 TTTAAAAAAACATCCACTTATCCAAGATTTAAAAAATCACACCCAATACGTTAGGGCACAATTCC
1 TTTAAAAAAACATCCACTCATCCAAGATTTAAAAAACCACACCCAATACGTTAGGGCACAATCCC
* *
73745194 TTTAGAATCTCAAACTCGGAATATTTCCTT
66 TTTAGAATCCCAAACTCAGAATATTTCCTT
73745224 CATGATTTTT
Statistics
Matches: 86, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
98 86 1.00
ACGTcount: A:0.38, C:0.25, G:0.10, T:0.27
Consensus pattern (98 bp):
TTTAAAAAAACATCCACTCATCCAAGATTTAAAAAACCACACCCAATACGTTAGGGCACAATCCC
TTTAGAATCCCAAACTCAGAATATTTCCTTTAA
Found at i:73759645 original size:51 final size:51
Alignment explanation
Indices: 73759569--73759688 Score: 186
Period size: 51 Copynumber: 2.4 Consensus size: 51
73759559 CTCAAACTTA
* *
73759569 CTTCATACTTCATCCGGAATTATTACCTTGTTGCTCTAACTTCAACAAGAG
1 CTTCATATTTCATCCGGAATAATTACCTTGTTGCTCTAACTTCAACAAGAG
* * *
73759620 CTTCATATTTCATCCGGAATAATTACTTTGTTGCTCTAGCTTTAACAAGAG
1 CTTCATATTTCATCCGGAATAATTACCTTGTTGCTCTAACTTCAACAAGAG
*
73759671 CTTCATATTTTATCCGGA
1 CTTCATATTTCATCCGGA
73759689 TAACTGAGTT
Statistics
Matches: 63, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
51 63 1.00
ACGTcount: A:0.27, C:0.23, G:0.12, T:0.38
Consensus pattern (51 bp):
CTTCATATTTCATCCGGAATAATTACCTTGTTGCTCTAACTTCAACAAGAG
Found at i:73762081 original size:21 final size:21
Alignment explanation
Indices: 73762055--73762096 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
73762045 AGAGTAAATA
73762055 GACATGTTGCGATCTCTTCCC
1 GACATGTTGCGATCTCTTCCC
73762076 GACATGTTGCGATCTCTTCCC
1 GACATGTTGCGATCTCTTCCC
73762097 AACAAGTTCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.14, C:0.33, G:0.19, T:0.33
Consensus pattern (21 bp):
GACATGTTGCGATCTCTTCCC
Found at i:73772776 original size:46 final size:46
Alignment explanation
Indices: 73772709--73772837 Score: 213
Period size: 46 Copynumber: 2.8 Consensus size: 46
73772699 TGTAACCCGC
* * * *
73772709 CCATAAGCGAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
73772755 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
73772801 CCATAAGTGAACTCGGACTCGACTCAACGAGCTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
73772838 TGCTCAAATA
Statistics
Matches: 78, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 78 1.00
ACGTcount: A:0.29, C:0.31, G:0.22, T:0.18
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:73780351 original size:46 final size:45
Alignment explanation
Indices: 73780284--73780454 Score: 159
Period size: 46 Copynumber: 3.7 Consensus size: 45
73780274 GTAACCCGTC
* *
73780284 CATAAGCGAACTTGGAGTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
* *
73780329 ACATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 -CATAAGCGAACTCGGACTCAACTCAACGAGCTCGG--G-C--GTTCGCAT
* * * * *
73780379 C-TCA-CGAACTGGGACTCAACTCAACGAGGTCGGACATTCGCAT
1 CATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
* *
73780422 CCATAAGTGAACTCGGACTCGACTCAACGAGCT
1 -CATAAGCGAACTCGGACTCAACTCAACGAGCT
73780455 TGGATGCCCA
Statistics
Matches: 100, Mismatches: 16, Indels: 18
0.75 0.12 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 2 0.02
46 54 0.54
47 26 0.26
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.28, G:0.23, T:0.20
Consensus pattern (45 bp):
CATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
Found at i:73780406 original size:93 final size:93
Alignment explanation
Indices: 73780290--73780462 Score: 274
Period size: 93 Copynumber: 1.9 Consensus size: 93
73780280 CGTCCATAAG
* * * *
73780290 CGAACTTGGAGTCAACTCAACGAGCTCGGGCGTTCGCATACATAAGTGAACTCGGACTCAACTCA
1 CGAACTGGGACTCAACTCAACGAGCTCGGACATTCGCATACATAAGTGAACTCGGACTCAACTCA
73780355 ACGAGCTCGGATGCCTAGTTACATCTCA
66 ACGAGCTCGGATGCCTAGTTACATCTCA
* * *
73780383 CGAACTGGGACTCAACTCAACGAGGTCGGACATTCGCATCCATAAGTGAACTCGGACTCGACTCA
1 CGAACTGGGACTCAACTCAACGAGCTCGGACATTCGCATACATAAGTGAACTCGGACTCAACTCA
*
73780448 ACGAGCTTGGATGCC
66 ACGAGCTCGGATGCC
73780463 CAAATATCCT
Statistics
Matches: 72, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.28, C:0.28, G:0.24, T:0.20
Consensus pattern (93 bp):
CGAACTGGGACTCAACTCAACGAGCTCGGACATTCGCATACATAAGTGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCA
Found at i:73780994 original size:48 final size:48
Alignment explanation
Indices: 73780912--73781005 Score: 129
Period size: 48 Copynumber: 2.0 Consensus size: 48
73780902 TTTCTTGGCT
* * *
73780912 TAAAAACGCCTAAGTTAGCCTAACTTCCACCAATAATGGATTCAACCG
1 TAAAAACGCCTAAGTCAGCCTAACTTCCAACAATAAAGGATTCAACCG
73780960 TAAAAACGCCTAAGTCAG-CTCAAC-TCGCAACAATAAAGGATTCAAC
1 TAAAAACGCCTAAGTCAGCCT-AACTTC-CAACAATAAAGGATTCAAC
73781006 AGAATTCCCT
Statistics
Matches: 41, Mismatches: 3, Indels: 4
0.85 0.06 0.08
Matches are distributed among these distances:
47 4 0.10
48 37 0.90
ACGTcount: A:0.40, C:0.27, G:0.13, T:0.20
Consensus pattern (48 bp):
TAAAAACGCCTAAGTCAGCCTAACTTCCAACAATAAAGGATTCAACCG
Found at i:73783498 original size:48 final size:48
Alignment explanation
Indices: 73783409--73783502 Score: 120
Period size: 48 Copynumber: 2.0 Consensus size: 48
73783399 TTTCTTGGCT
* * * *
73783409 TAAAAACGTCTAAGTCAGCCTAACTTCCACCAGTAATGGATTCAACCG
1 TAAAAACGCCTAAGTCAGCCTAACTTCCAACAATAAAGGATTCAACCG
73783457 TAAAAACGCCTAAGTCAG-CTCAAC-TCGCAACAATAAAGGATTCAAC
1 TAAAAACGCCTAAGTCAGCCT-AACTTC-CAACAATAAAGGATTCAAC
73783503 AGAATTCCCT
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
47 4 0.10
48 36 0.90
ACGTcount: A:0.39, C:0.27, G:0.14, T:0.20
Consensus pattern (48 bp):
TAAAAACGCCTAAGTCAGCCTAACTTCCAACAATAAAGGATTCAACCG
Found at i:73787966 original size:27 final size:27
Alignment explanation
Indices: 73787911--73788087 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
73787901 TATATGAGTC
* * *
73787911 CGCACACTCAGTGCTA-ATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
73787937 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
73787964 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
73787992 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* * **
73788019 GGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
73788046 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
73788073 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
73788088 GTACAATTTA
Statistics
Matches: 128, Mismatches: 19, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
26 15 0.12
27 89 0.70
28 24 0.19
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:73789417 original size:18 final size:17
Alignment explanation
Indices: 73789373--73789418 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 17
73789363 AGGATGAAGC
*
73789373 CTTTTCTTTTTTTTTTT
1 CTTTTCTTTTTTTTATT
*
73789390 CATTTGCTTTCTTTTTATT
1 C-TTTTCTTT-TTTTTATT
73789409 CTTTTCTTTT
1 CTTTTCTTTT
73789419 ATTCATTAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
17 2 0.08
18 14 0.58
19 8 0.33
ACGTcount: A:0.04, C:0.15, G:0.02, T:0.78
Consensus pattern (17 bp):
CTTTTCTTTTTTTTATT
Found at i:73792928 original size:47 final size:47
Alignment explanation
Indices: 73792865--73793208 Score: 468
Period size: 47 Copynumber: 7.4 Consensus size: 47
73792855 CCCTTCGGGA
* * *
73792865 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGC
* * *
73792912 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGC
* *
73792959 CTTATCTCATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGC
* * *
73793006 CTTATCACATATATACACTTTCACATTCATCACGTTGGTCACTCGAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGC
*
73793053 C-TATCACATATATACACTTTCACATTCATCACGTTGGCCACTCGG-
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGC
*
73793098 -----CACATATATACACTTTCACATTCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGC
* *
73793140 CCTATCACATATATATATACTTTCACATTCATCACATTGGCCACTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCACTCGGC
* *
73793189 CCTATCACATATATATACTT
1 CTTATCACATATATACACTT
73793209 GTACATCAAT
Statistics
Matches: 273, Mismatches: 16, Indels: 16
0.90 0.05 0.05
Matches are distributed among these distances:
41 41 0.15
46 42 0.15
47 145 0.53
49 45 0.16
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGC
Found at i:73793168 original size:49 final size:49
Alignment explanation
Indices: 73793101--73793206 Score: 194
Period size: 49 Copynumber: 2.2 Consensus size: 49
73793091 CACTCGGCAC
*
73793101 ATATATACACTTTCACATTCATCACGTTGGCCACTCGGCCCTATCACAT
1 ATATATACACTTTCACATTCATCACATTGGCCACTCGGCCCTATCACAT
*
73793150 ATATATATACTTTCACATTCATCACATTGGCCACTCGGCCCTATCACAT
1 ATATATACACTTTCACATTCATCACATTGGCCACTCGGCCCTATCACAT
73793199 ATATATAC
1 ATATATAC
73793207 TTGTACATCA
Statistics
Matches: 54, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
49 54 1.00
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.32
Consensus pattern (49 bp):
ATATATACACTTTCACATTCATCACATTGGCCACTCGGCCCTATCACAT
Found at i:73797781 original size:46 final size:46
Alignment explanation
Indices: 73797714--73797889 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
73797704 ATGTAACCCG
73797714 TCCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACA
1 TCCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACA
*
73797760 TCCATAAGTGAACTCGGACTCAAGTCAACGAGCTCGGATGCCTAGTT-ACA
1 TCCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-C--GTTCACA
* * * * * * *
73797810 T-C-TCA-CGAATTCGGACTCAACTCAATGAGTTCGGGCATTCGCA
1 TCCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACA
*
73797853 TCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 TCCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
73797890 ATGCTCAACC
Statistics
Matches: 108, Mismatches: 13, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 3 0.03
46 62 0.57
47 24 0.22
48 3 0.03
49 2 0.02
50 4 0.04
51 3 0.03
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (46 bp):
TCCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACA
Found at i:73799378 original size:40 final size:40
Alignment explanation
Indices: 73799330--73799649 Score: 451
Period size: 40 Copynumber: 8.0 Consensus size: 40
73799320 GCCCGAATAC
* * * *
73799330 ACATCACCAGCATGATTGCTCTTCGGGACCTAGCCCGGAT
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
* * * * ** *
73799370 ATAACACCAGCACGAATGCTCTTTGGGGTTTAGCACGGAT
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
* * *
73799410 ATATCACTAGCACGAATGCTCTTCAGAACTTAGCCCGGAT
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
* *
73799450 ACATCACTAGCATGAATGCTCTTCAGGACTTAGCCCGGAT
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
* * *
73799490 ATATCACTAGCACGAATGCTCTTCGGAACTTAGCCTGGAT
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
*
73799530 ACATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGAT
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
*
73799570 ACATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGAT
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
73799610 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
73799650 CATTGTCGAG
Statistics
Matches: 250, Mismatches: 30, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 250 1.00
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
Found at i:73799776 original size:38 final size:38
Alignment explanation
Indices: 73799707--73799781 Score: 107
Period size: 38 Copynumber: 2.0 Consensus size: 38
73799697 GAATTTTAAT
*
73799707 CCGGACATAATCTCTGTACATAGCCATCGGGTCTTTAC
1 CCGGACATAATCTCTGTACATAGCCAGCGGGTCTTTAC
* *
73799745 CCGGACATAATCTCT-TCATATAGTCAGCGGGTCTTTA
1 CCGGACATAATCTCTGT-ACATAGCCAGCGGGTCTTTA
73799782 AACTCGGATT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
37 1 0.03
38 32 0.97
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.31
Consensus pattern (38 bp):
CCGGACATAATCTCTGTACATAGCCAGCGGGTCTTTAC
Found at i:73802274 original size:47 final size:47
Alignment explanation
Indices: 73802211--73802555 Score: 459
Period size: 47 Copynumber: 7.4 Consensus size: 47
73802201 CCCTTCGGGA
* * *
73802211 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGC
* * *
73802258 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGC
* *
73802305 CTTATCTCATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGC
* * *
73802352 CTTATCACATATATACACTTTCACATTCATCACGTTGGTCACTCGAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGC
* *
73802399 CCTATCACATATATACACTTTCACATTCATCACGTTGGCCACTCGG-
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGC
* *
73802445 -----CACATATATACACTTTCACATTCATCACGTTGGCCACTCAGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGC
* *
73802487 CCTATCACATATATATATACTTTCACATTCATCACATTGGCCACTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCACTCGGC
* *
73802536 CCTATCACATATATATACTT
1 CTTATCACATATATACACTT
73802556 GTACATCAAT
Statistics
Matches: 271, Mismatches: 19, Indels: 16
0.89 0.06 0.05
Matches are distributed among these distances:
41 40 0.15
47 187 0.69
49 44 0.16
ACGTcount: A:0.28, C:0.30, G:0.08, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGC
Found at i:73802515 original size:49 final size:49
Alignment explanation
Indices: 73802448--73802553 Score: 185
Period size: 49 Copynumber: 2.2 Consensus size: 49
73802438 CACTCGGCAC
*
73802448 ATATATACACTTTCACATTCATCACGTTGGCCACTCAGCCCTATCACAT
1 ATATATACACTTTCACATTCATCACATTGGCCACTCAGCCCTATCACAT
* *
73802497 ATATATATACTTTCACATTCATCACATTGGCCACTCGGCCCTATCACAT
1 ATATATACACTTTCACATTCATCACATTGGCCACTCAGCCCTATCACAT
73802546 ATATATAC
1 ATATATAC
73802554 TTGTACATCA
Statistics
Matches: 53, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
49 53 1.00
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (49 bp):
ATATATACACTTTCACATTCATCACATTGGCCACTCAGCCCTATCACAT
Found at i:73805337 original size:6 final size:6
Alignment explanation
Indices: 73805328--73805392 Score: 103
Period size: 6 Copynumber: 10.3 Consensus size: 6
73805318 TAAGTCTAAG
73805328 AAATAA AAATAAA ACAATGAA AAATAA AAATAA AAATAA AAATAA AAATAA
1 AAATAA AAAT-AA A-AAT-AA AAATAA AAATAA AAATAA AAATAA AAATAA
73805379 AAATAA AAATAA AA
1 AAATAA AAATAA AA
73805393 CTGAAAAGAA
Statistics
Matches: 56, Mismatches: 1, Indels: 4
0.92 0.02 0.07
Matches are distributed among these distances:
6 44 0.79
7 6 0.11
8 6 0.11
ACGTcount: A:0.82, C:0.02, G:0.02, T:0.15
Consensus pattern (6 bp):
AAATAA
Found at i:73805404 original size:18 final size:18
Alignment explanation
Indices: 73805328--73805404 Score: 91
Period size: 18 Copynumber: 4.1 Consensus size: 18
73805318 TAAGTCTAAG
73805328 AAATAAAAATAAAACAATGAA
1 AAATAAAAAT-AAA-AA-GAA
*
73805349 AAATAAAAATAAAAATAA
1 AAATAAAAATAAAAAGAA
*
73805367 AAATAAAAATAAAAATAA
1 AAATAAAAATAAAAAGAA
* *
73805385 AAATAAAACTGAAAAGAA
1 AAATAAAAATAAAAAGAA
73805403 AA
1 AA
73805405 GAAATTAAAT
Statistics
Matches: 52, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
18 37 0.71
19 2 0.04
20 3 0.06
21 10 0.19
ACGTcount: A:0.79, C:0.03, G:0.04, T:0.14
Consensus pattern (18 bp):
AAATAAAAATAAAAAGAA
Found at i:73811215 original size:420 final size:420
Alignment explanation
Indices: 73810411--73811229 Score: 908
Period size: 419 Copynumber: 1.9 Consensus size: 420
73810401 GACTAAATCG
* * * *
73810411 TAAAAATGTCAAAGGTTAGGGGTAAAATGGTCATTTGGACTGCGGGTAGATATTAAACTTAAAAT
1 TAAAAATGTCAAAGGTTAGGGGCAAAATAGTCATTTGAACCGCGGGTAGATATTAAACTTAAAAT
* * * * * *
73810476 GTATAATGTGGGGGTATTAATGAGTTAATTTTGTTGTTATAGACCCCGATGAACAAATTTCGGAG
66 GTATAATGTGGGAGTATTAATGAGTTAATTTTGCTGTAATAGACCCCAAGGAACAAATTCCGGAG
* * * ** *
73810541 GTCGATCGTGGTAAACGCAAGGTTTCGAATAACCGAAACACAATCCCGAAAAGAATACCAGGTAA
131 GTCAATCGAGGAAAACAAAAGGTTTCGAATAACCGAAACACAAGCCCGAAAAGAATACCAGGTAA
* * * * * ** *
73810606 GTTTGGATAACTTGAAGTAAACCCTTAATATACATAATTGTATGCTTTATGAATGCTTGGTGATT
196 GTTCGGATAACTTAAAGTAAACCCTTAATATACATAATTATATGATTTATAAATGAATGATGATT
* * * *
73810671 GCATTTACTATTGGCATGAAATATCATAGAAATGTATATTGATGATAACATGTGAAAAATATCTC
261 GCATTTACTATTAGCATGAAATATCATAGAAATGCATATTAATAATAACATGTGAAAAATATCTC
* * * * *
73810736 AGTTGAGGTTGACAAAGGGAAATCGATGGATAATCGCTCATTGAGATGTGAACTGAGATCCTGTA
326 AGTTGAGGTTGACAAAAGGAAATCAATGGATAAACGCTCATTGACATGTGAACTGAGATCCTGCA
73810801 TGTGTTGCATTAAACAAGCTTAGTGAACCA
391 TGTGTTGCATTAAACAAGCTTAGTGAACCA
* * * * *
73810831 TAAAAATGTGAAAGGTTAGGGGCAAAATAGTCATTTGAACCGGGGGTGGA-ATTTAGACTTGAAA
1 TAAAAATGTCAAAGGTTAGGGGCAAAATAGTCATTTGAACCGCGGGTAGATA-TTAAACTTAAAA
* * *
73810895 TGTATAATGT-GGAGTGTTAATGATTTAATTTTGCTGTAATAGA-CCCAAGGAAGAAATTCCGGA
65 TGTATAATGTGGGAGTATTAATGAGTTAATTTTGCTGTAATAGACCCCAAGGAACAAATTCCGGA
* * * *
73810958 GGTCAATCGAGGAAAATAAAAGGTTTCGGAATAATCGAAATAC-AGCACCGAAACGAATACCAGG
130 GGTCAATCGAGGAAAACAAAAGGTTTC-GAATAACCGAAACACAAGC-CCGAAAAGAATACCAGG
* * * *
73811022 TAGGTTCGGATAACTTAAAGTAAACTCC-TAATATGCTTAATTATATGATTTGTAAATGAATGAT
193 TAAGTTCGGATAACTTAAAGTAAAC-CCTTAATATACATAATTATATGATTTATAAATGAATGAT
* * **
73811086 GATTGCATTTATTGA-TAGCAT-AAGATTTCAT-GAAATGCAT-TCCTAATAATAATGTGTTGAA
257 GATTGCATTTACT-ATTAGCATGAA-ATATCATAGAAATGCATAT--TAATAATAACATG-TGAA
* * ** *
73811147 AAATTGTCTCGGTTGAGGTT-A-AAAAGGAAATTCAATGGATAAAC-CATGTTTTACATGTGTAA
317 AAA-TATCTCAGTTGAGGTTGACAAAAGGAAA-TCAATGGATAAACGC-TCATTGACATGTG-AA
73811209 -TGAGATCCTGCATGTGTTGCA
378 CTGAGATCCTGCATGTGTTGCA
73811230 GAAAGGATTT
Statistics
Matches: 328, Mismatches: 58, Indels: 26
0.80 0.14 0.06
Matches are distributed among these distances:
417 1 0.00
418 49 0.15
419 148 0.45
420 114 0.35
421 16 0.05
ACGTcount: A:0.36, C:0.12, G:0.22, T:0.30
Consensus pattern (420 bp):
TAAAAATGTCAAAGGTTAGGGGCAAAATAGTCATTTGAACCGCGGGTAGATATTAAACTTAAAAT
GTATAATGTGGGAGTATTAATGAGTTAATTTTGCTGTAATAGACCCCAAGGAACAAATTCCGGAG
GTCAATCGAGGAAAACAAAAGGTTTCGAATAACCGAAACACAAGCCCGAAAAGAATACCAGGTAA
GTTCGGATAACTTAAAGTAAACCCTTAATATACATAATTATATGATTTATAAATGAATGATGATT
GCATTTACTATTAGCATGAAATATCATAGAAATGCATATTAATAATAACATGTGAAAAATATCTC
AGTTGAGGTTGACAAAAGGAAATCAATGGATAAACGCTCATTGACATGTGAACTGAGATCCTGCA
TGTGTTGCATTAAACAAGCTTAGTGAACCA
Found at i:73819916 original size:75 final size:75
Alignment explanation
Indices: 73819793--73819941 Score: 289
Period size: 75 Copynumber: 2.0 Consensus size: 75
73819783 AAAATTTGAG
73819793 TAAAAACTTGGTGACCCAATTTGGTACATTTCAAATGTAAAGTCTTGGTAATGCTTCGAACCCTA
1 TAAAAACTTGGTGACCCAATTTGGTACATTTCAAATGTAAAGTCTTGGTAATGCTTCGAACCCTA
73819858 TCCCAACGTA
66 TCCCAACGTA
*
73819868 TAAAAACTTGGTGACCCAATTTGGTACGTTTCAAATGTAAAGTCTTGGTAATGCTTCGAACCCTA
1 TAAAAACTTGGTGACCCAATTTGGTACATTTCAAATGTAAAGTCTTGGTAATGCTTCGAACCCTA
73819933 TCCCAACGT
66 TCCCAACGT
73819942 CGGGTACGGC
Statistics
Matches: 73, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
75 73 1.00
ACGTcount: A:0.31, C:0.21, G:0.17, T:0.31
Consensus pattern (75 bp):
TAAAAACTTGGTGACCCAATTTGGTACATTTCAAATGTAAAGTCTTGGTAATGCTTCGAACCCTA
TCCCAACGTA
Found at i:73832904 original size:79 final size:81
Alignment explanation
Indices: 73832768--73832950 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
73832758 TCGAATGATG
* *
73832768 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
73832832 TGTGCGAGTTACTA-A
66 TGTGCGAGTTACTATA
* * * **
73832847 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
73832909 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGTTACTATA
* *
73832927 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
73832951 TGAACGAGTA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 59 0.66
80 30 0.33
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGTTACTATA
Found at i:73832966 original size:40 final size:40
Alignment explanation
Indices: 73832769--73832952 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
73832759 CGAATGATGT
* * * *
73832769 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* *
73832809 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
*
73832849 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
73832887 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
73832928 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
73832953 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:73832974 original size:79 final size:79
Alignment explanation
Indices: 73832821--73832985 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
73832811 GGACTAAGAT
* **
73832821 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
73832886 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
73832900 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
73832963 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
73832979 CCGAAGG
1 CCGAAGG
73832986 TACGTGATTC
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 49 0.65
80 24 0.32
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:73840144 original size:27 final size:27
Alignment explanation
Indices: 73840113--73840290 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
73840103 TAAATTGTAC
73840113 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
73840140 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
73840166 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
73840194 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
73840222 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
73840249 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
73840276 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
73840291 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:73840227 original size:82 final size:81
Alignment explanation
Indices: 73840114--73840269 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
73840104 AAATTGTACA
* *
73840114 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
73840178 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
73840195 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
73840260 TGCGAGTTGA
65 TGCGAATTGA
73840270 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:73840281 original size:82 final size:81
Alignment explanation
Indices: 73840110--73840290 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
73840100 GATTAAATTG
* *
73840110 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
73840175 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
73840191 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
73840255 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
73840273 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
73840291 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:73848213 original size:27 final size:27
Alignment explanation
Indices: 73848182--73848359 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
73848172 TAAATTGTAC
73848182 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
73848209 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
73848235 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
73848263 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
73848291 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
73848318 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
73848345 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
73848360 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:73848296 original size:82 final size:81
Alignment explanation
Indices: 73848183--73848338 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
73848173 AAATTGTACA
* *
73848183 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
73848247 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
73848264 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
73848329 TGCGAGTTGA
65 TGCGAATTGA
73848339 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:73848350 original size:82 final size:81
Alignment explanation
Indices: 73848179--73848359 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
73848169 GATTAAATTG
* *
73848179 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
73848244 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
73848260 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
73848324 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
73848342 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
73848360 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:73855621 original size:39 final size:39
Alignment explanation
Indices: 73855567--73855687 Score: 224
Period size: 39 Copynumber: 3.1 Consensus size: 39
73855557 ATTACCAGCA
* *
73855567 CCAGCACGAAGCCTGCGGGTCTTTAGCCCGGACACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
73855606 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
73855645 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
73855684 CCAG
1 CCAG
73855688 TGTCTTGCAT
Statistics
Matches: 80, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 80 1.00
ACGTcount: A:0.22, C:0.32, G:0.26, T:0.20
Consensus pattern (39 bp):
CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
Found at i:73860637 original size:37 final size:37
Alignment explanation
Indices: 73860587--73860665 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
73860577 TTATTACGAA
* * *
73860587 GTCTTACCCGGACATAATCTCCACACGAAGTTATCAG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCAG
* *
73860624 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCAG
73860661 GTCTT
1 GTCTT
73860666 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.27, C:0.32, G:0.18, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCAG
Found at i:73860858 original size:49 final size:49
Alignment explanation
Indices: 73860784--73861147 Score: 537
Period size: 49 Copynumber: 7.6 Consensus size: 49
73860774 CCCTTCGGGA
* * * * *
73860784 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
73860831 CCTGTCACATATATATACACTTCCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
73860880 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
73860927 CCTATCAC--GTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
73860974 CTTATCACACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
73861023 CCTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
73861072 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
73861119 CTTATCACATATATATACACTTTCACATT
1 CTTATCACATATATATACACTTTCACATT
73861148 TATTCAAATA
Statistics
Matches: 289, Mismatches: 22, Indels: 10
0.90 0.07 0.03
Matches are distributed among these distances:
47 142 0.49
48 1 0.00
49 146 0.51
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:73860985 original size:96 final size:95
Alignment explanation
Indices: 73860784--73861147 Score: 559
Period size: 96 Copynumber: 3.8 Consensus size: 95
73860774 CCCTTCGGGA
* * * * * * *
73860784 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACA-ATATATAC
*
73860849 ACTTCCACATTCATCACATCGGCCATTAGGC
65 ACTTTCACATTCATCACATCGGCCATTAGGC
*
73860880 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCAC-GTATATACA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACAATATATACA
73860944 CTTTCACATTCATCACATCGGCCATTAGGC
66 CTTTCACATTCATCACATCGGCCATTAGGC
73860974 CTTATCACACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATAT
1 CTTAT--CACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACA-ATATAT
*
73861039 ACACTTTCACATTCATCACATCGGCTATTAGGC
63 ACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
73861072 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACA-ATATATAC
73861137 ACTTTCACATT
65 ACTTTCACATT
73861148 TATTCAAATA
Statistics
Matches: 250, Mismatches: 14, Indels: 8
0.92 0.05 0.03
Matches are distributed among these distances:
94 42 0.17
96 166 0.66
98 42 0.17
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (95 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACAATATATACA
CTTTCACATTCATCACATCGGCCATTAGGC
Found at i:73862852 original size:13 final size:13
Alignment explanation
Indices: 73862834--73862858 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
73862824 TACTAAATTT
73862834 TCATGGATTCAAG
1 TCATGGATTCAAG
73862847 TCATGGATTCAA
1 TCATGGATTCAA
73862859 TATACCATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (13 bp):
TCATGGATTCAAG
Found at i:73865129 original size:29 final size:29
Alignment explanation
Indices: 73865090--73865168 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
73865080 CTTACTAATC
*
73865090 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
73865120 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
73865149 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
73865169 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:73865211 original size:43 final size:43
Alignment explanation
Indices: 73865150--73865252 Score: 197
Period size: 43 Copynumber: 2.4 Consensus size: 43
73865140 TGCATTTCAA
73865150 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
73865193 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
*
73865236 GCCCGGACACTTAGTGC
1 GCCCGCACACTTAGTGC
73865253 TGAAAACCAA
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 59 1.00
ACGTcount: A:0.26, C:0.35, G:0.17, T:0.22
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
Found at i:73867164 original size:37 final size:35
Alignment explanation
Indices: 73867114--73867190 Score: 109
Period size: 37 Copynumber: 2.1 Consensus size: 35
73867104 TTATTACGAA
* *
73867114 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATC-CC-CACGAAGTCATCGG
*
73867151 GTCTTACCCGGACAAAATCCCCACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACGAAGTCATCGG
73867186 GTCTT
1 GTCTT
73867191 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
35 17 0.46
36 2 0.05
37 18 0.49
ACGTcount: A:0.25, C:0.31, G:0.19, T:0.25
Consensus pattern (35 bp):
GTCTTACCCGGACAAAATCCCCACGAAGTCATCGG
Found at i:73867441 original size:47 final size:47
Alignment explanation
Indices: 73867309--73867667 Score: 535
Period size: 47 Copynumber: 7.6 Consensus size: 47
73867299 CCCTTCGGGA
* * * * * *
73867309 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
73867356 CCTGTCACATATATACAC-TTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
73867402 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
73867449 C-TATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
73867495 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
73867544 C-TATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
73867592 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
73867639 CTTATCACATATATATACACTTTCACATT
1 CTTATCAC--ATATATACACTTTCACATT
73867668 TATTCAAATA
Statistics
Matches: 289, Mismatches: 16, Indels: 12
0.91 0.05 0.04
Matches are distributed among these distances:
46 84 0.29
47 94 0.33
48 47 0.16
49 64 0.22
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:73867547 original size:95 final size:94
Alignment explanation
Indices: 73867309--73867667 Score: 544
Period size: 95 Copynumber: 3.8 Consensus size: 94
73867299 CCCTTCGGGA
* * * * * * *
73867309 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCAC-ATATATACA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGG-CCTATCACAATATATACA
73867373 C-TTCACATTCATCACATCGGCCATTAGGC
65 CTTTCACATTCATCACATCGGCCATTAGGC
*
73867402 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTATCAC-GTATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTATCACAATATATACAC
73867466 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
73867495 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTATCACATATATATA
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTATCACA-ATATATA
*
73867560 CACTTTCACATTCATCACATCGGCTATTAGGC
63 CACTTTCACATTCATCACATCGGCCATTAGGC
* *
73867592 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC-TATCACA-ATATATAC
73867657 ACTTTCACATT
64 ACTTTCACATT
73867668 TATTCAAATA
Statistics
Matches: 248, Mismatches: 12, Indels: 9
0.92 0.04 0.03
Matches are distributed among these distances:
92 16 0.06
93 76 0.31
95 84 0.34
96 27 0.11
97 45 0.18
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.33
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTATCACAATATATACAC
TTTCACATTCATCACATCGGCCATTAGGC
Found at i:73867697 original size:190 final size:187
Alignment explanation
Indices: 73867320--73867713 Score: 487
Period size: 190 Copynumber: 2.1 Consensus size: 187
73867310 TTATCACATT
* * * * *
73867320 TATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACACTTCACATTCAT
1 TATACACTTTCACATTCATCACATCGGCCACTAGGCCCTATCACATATATACACTTCACATTCAT
73867385 CACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
66 CACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
* * * * * *
73867450 TATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA-
131 TATCACATATATACACTTTCACATTCATCAAATCAGACATTA-G-CATACCACATATAC
*
73867508 TATACACTTTCACATTCATCACATCGGCCATTAGG-CCTATCACATATATATACACTTTCACATT
1 TATACACTTTCACATTCATCACATCGGCCACTAGGCCCTATCAC--ATATATACAC-TTCACATT
* * *
73867572 CATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCG
63 CATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAG
* *
73867637 GCCTTATCACATATATATACACTTTCACATTTATTCAAAT-ATAC-TTCA-CATACCACATATAC
128 GCC-TATCAC--ATATATACACTTTCACATTCA-TCAAATCAGACATT-AGCATACCACATATAC
*
73867699 TAT-CA-TTTCATATTC
1 TATACACTTTCACATTC
73867714 GAATACTCAT
Statistics
Matches: 179, Mismatches: 18, Indels: 17
0.84 0.08 0.08
Matches are distributed among these distances:
187 7 0.04
188 30 0.17
189 19 0.11
190 86 0.48
191 9 0.05
192 2 0.01
193 21 0.12
194 5 0.03
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (187 bp):
TATACACTTTCACATTCATCACATCGGCCACTAGGCCCTATCACATATATACACTTCACATTCAT
CACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
TATCACATATATACACTTTCACATTCATCAAATCAGACATTAGCATACCACATATAC
Found at i:73869367 original size:13 final size:13
Alignment explanation
Indices: 73869349--73869373 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
73869339 TACTAAATTT
73869349 TCATGGATTCAAG
1 TCATGGATTCAAG
73869362 TCATGGATTCAA
1 TCATGGATTCAA
73869374 TATACCATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (13 bp):
TCATGGATTCAAG
Found at i:73872938 original size:40 final size:40
Alignment explanation
Indices: 73872868--73873034 Score: 140
Period size: 40 Copynumber: 4.2 Consensus size: 40
73872858 CAGGGTTTAG
** * *
73872868 CCGGATATAACCACTCGCAC-AAGGCCTTCGGGTCTTAAC
1 CCGGATATAGTCACTAGCACAAATGCCTTCGGGTCTTAAC
* * * *
73872907 CCGGATATGGTCACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTCACTAGCACAAATGCCTTCGGGTCTTAAC
* * *
73872947 CCGGATATAGTCGCTAGCACAAATGCCTTCGGATCTT-AG
1 CCGGATATAGTCACTAGCACAAATGCCTTCGGGTCTTAAC
* * * * ** * *
73872986 TCTGATGTAGTCGCTTAGCACAAAACCCTTCGGGACTTAGC
1 CCGGATATAGTCAC-TAGCACAAATGCCTTCGGGTCTTAAC
73873027 CCGGATAT
1 CCGGATAT
73873035 CATTCGAGTA
Statistics
Matches: 98, Mismatches: 27, Indels: 4
0.76 0.21 0.03
Matches are distributed among these distances:
39 26 0.27
40 67 0.68
41 5 0.05
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTCACTAGCACAAATGCCTTCGGGTCTTAAC
Found at i:73886358 original size:44 final size:46
Alignment explanation
Indices: 73886272--73886364 Score: 120
Period size: 44 Copynumber: 2.1 Consensus size: 46
73886262 ATAGAGATGT
* *
73886272 AATGGAATAGAGCTGTAATTAGTAATTCAATTGTTTAGTTGAATGG
1 AATGGAATAGAACTGGAATTAGTAATTCAATTGTTTAGTTGAATGG
* *
73886318 AATGGAATAGAACTGGAA-TAGT-ATTC-TTGTGTTTGGTTGAATGG
1 AATGGAATAGAACTGGAATTAGTAATTCAAT-TGTTTAGTTGAATGG
73886362 AAT
1 AAT
73886365 ATAGGTTGTA
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
43 1 0.02
44 21 0.50
45 4 0.10
46 16 0.38
ACGTcount: A:0.33, C:0.04, G:0.26, T:0.37
Consensus pattern (46 bp):
AATGGAATAGAACTGGAATTAGTAATTCAATTGTTTAGTTGAATGG
Found at i:73898673 original size:79 final size:81
Alignment explanation
Indices: 73898564--73898746 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
73898554 TACTCGTTCA
* *
73898564 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
73898627 ATTTAGTAAC-TCGCACC
65 ATATAGTAACTTAGCA-C
**
73898644 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
* *
73898707 TATGGTCACTTAGCAC
66 TATAGTAACTTAGCAC
*
73898723 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
73898747 CATCATTCGA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 59 0.66
80 28 0.31
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:73898746 original size:40 final size:40
Alignment explanation
Indices: 73898543--73898746 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
73898533 CGGAATTTAA
** *
73898543 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
73898583 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
73898623 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
73898662 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
73898702 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
73898742 CCGGA
1 CCGGA
73898747 CATCATTCGA
Statistics
Matches: 141, Mismatches: 16, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 94 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:73907716 original size:28 final size:27
Alignment explanation
Indices: 73907537--73907718 Score: 168
Period size: 27 Copynumber: 6.6 Consensus size: 27
73907527 TATTGAGTCA
* * * *
73907537 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
73907564 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
73907591 CGCACACTTAGTCGCTACATAGTCAAACT
1 CGCACACTTAGT-GCTACATAGTCAAA-T
* * * *
73907620 CGCACACTTAGTGCCGCAGATGGTCAATT
1 CGCACACTTAGTG-C-TACATAGTCAAAT
* * **
73907649 CGCACAC-TAGTGCATTCATATTCATTT
1 CGCACACTTAGTGC-TACATAGTCAAAT
*
73907676 CGCACACTTAGTGCAAACATAGTCAAAT
1 CGCACACTTAGTGC-TACATAGTCAAAT
73907704 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
73907719 GTACAATTTA
Statistics
Matches: 127, Mismatches: 23, Indels: 10
0.79 0.14 0.06
Matches are distributed among these distances:
27 50 0.39
28 47 0.37
29 22 0.17
30 8 0.06
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:73907716 original size:56 final size:55
Alignment explanation
Indices: 73907537--73907718 Score: 172
Period size: 56 Copynumber: 3.3 Consensus size: 55
73907527 TATTGAGTCA
* * * * * *
73907537 CGCACACTCAGTGCTATATAATC-AACTCGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCAACATAGTCAAAT
* * * *
73907591 CGCACACTTAGTCGCTACATAGTCAAACTCGCACACTTAGTGCCGCAGATGGTCAATT
1 CGCACACTTAGT-GCTACATAGTCAAACTCGCACACTTAGTG-C-AACATAGTCAAAT
* * **
73907649 CGCACAC-TAGTGCATTCATATTC-ATTTCGCACACTTAGTGCAAACATAGTCAAAT
1 CGCACACTTAGTGC-TACATAGTCAAACTCGCACACTTAGTGC-AACATAGTCAAAT
73907704 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
73907719 GTACAATTTA
Statistics
Matches: 104, Mismatches: 18, Indels: 11
0.78 0.14 0.08
Matches are distributed among these distances:
54 11 0.11
55 27 0.26
56 40 0.38
57 12 0.12
58 14 0.13
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.26
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCAACATAGTCAAAT
Found at i:73915631 original size:27 final size:27
Alignment explanation
Indices: 73915601--73915778 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
73915591 ATATTGAGTC
* * * *
73915601 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
73915628 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
73915655 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
73915683 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
73915710 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
73915737 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
73915764 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
73915779 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:73915740 original size:82 final size:81
Alignment explanation
Indices: 73915622--73915777 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
73915612 TGCTATATAA
* *
73915622 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
73915687 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
73915704 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
73915768 CACTTAGTGC
65 CACTTAGTGC
73915778 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:73919680 original size:18 final size:18
Alignment explanation
Indices: 73919654--73919688 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
73919644 TGACGTGGAA
* *
73919654 GAGAGAAGTTGTAAGGGG
1 GAGAAAAGTAGTAAGGGG
73919672 GAGAAAAGTAGTAAGGG
1 GAGAAAAGTAGTAAGGG
73919689 CAAGAAGCCA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.40, C:0.00, G:0.46, T:0.14
Consensus pattern (18 bp):
GAGAAAAGTAGTAAGGGG
Found at i:73922030 original size:19 final size:19
Alignment explanation
Indices: 73921994--73922031 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
73921984 AGATAAGTGT
**
73921994 TTTTAATTTAAAGTTAAAA
1 TTTTAATTTAAAAATAAAA
73922013 TTTTAATTTAAAAATAAAA
1 TTTTAATTTAAAAATAAAA
73922032 AAATAAATAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.45
Consensus pattern (19 bp):
TTTTAATTTAAAAATAAAA
Found at i:73923327 original size:27 final size:27
Alignment explanation
Indices: 73923297--73923441 Score: 130
Period size: 28 Copynumber: 5.3 Consensus size: 27
73923287 CCATGTAGGT
* * *
73923297 TTCCATTTCGTAGATTGCCACAAAGGG
1 TTCCATTTCATAAATTGCCACAAAGGC
* * *
73923324 TTCCCTTTTCACAAATCGCCACAAAGGC
1 TT-CCATTTCATAAATTGCCACAAAGGC
* * * * *
73923352 TTCCCTTTTTATATATCGCCACAAAGGA
1 TT-CCATTTCATAAATTGCCACAAAGGC
*
73923380 TTCC-TTTCTATAAATAGCCACAAAGGC
1 TTCCATTTC-ATAAATTGCCACAAAGGC
* *
73923407 TTCCATTTCATAAATTGCCACAAAAGT
1 TTCCATTTCATAAATTGCCACAAAGGC
73923434 TTCCATTT
1 TTCCATTT
73923442 ATCTGGCATG
Statistics
Matches: 98, Mismatches: 17, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
26 3 0.03
27 46 0.47
28 49 0.50
ACGTcount: A:0.30, C:0.26, G:0.12, T:0.32
Consensus pattern (27 bp):
TTCCATTTCATAAATTGCCACAAAGGC
Found at i:73929588 original size:57 final size:58
Alignment explanation
Indices: 73929494--73929615 Score: 129
Period size: 57 Copynumber: 2.1 Consensus size: 58
73929484 ACCAATCTAT
* * * ** * * * *
73929494 GCTAAATCCTATCCATAGCATATGCTTTAGAGAGCTTA-ATTTGGATTACCTATTCAG
1 GCTAAATCCAATCCATAACATAAGCTCAAGAGAGCTTACATTAGAATTACCCATCCAG
* * *
73929551 GCTAAATCCAATCTATAACATAAGCTCAAGAGTGCTTACATTAGAATTACCCATCCCG
1 GCTAAATCCAATCCATAACATAAGCTCAAGAGAGCTTACATTAGAATTACCCATCCAG
73929609 GCTAAAT
1 GCTAAAT
73929616 TCTATTTACA
Statistics
Matches: 52, Mismatches: 12, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
57 31 0.60
58 21 0.40
ACGTcount: A:0.34, C:0.22, G:0.14, T:0.30
Consensus pattern (58 bp):
GCTAAATCCAATCCATAACATAAGCTCAAGAGAGCTTACATTAGAATTACCCATCCAG
Found at i:73930637 original size:17 final size:17
Alignment explanation
Indices: 73930607--73930640 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
73930597 GACATTAAGT
73930607 TTTGAATTCCATAGCTA
1 TTTGAATTCCATAGCTA
73930624 TTTG-ATTCCTATAGCTA
1 TTTGAATTCC-ATAGCTA
73930641 CTAGAACCCA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 5 0.31
17 11 0.69
ACGTcount: A:0.26, C:0.18, G:0.12, T:0.44
Consensus pattern (17 bp):
TTTGAATTCCATAGCTA
Found at i:73934247 original size:53 final size:53
Alignment explanation
Indices: 73934167--73934271 Score: 131
Period size: 53 Copynumber: 2.0 Consensus size: 53
73934157 ATAAACTACG
* * *
73934167 ATAAGGCAAAGATCCCATGTAAAACCATGCCAATG-CATGGCAATGGTGAGTTC
1 ATAAGGCAAAGATACCACGTAAAACCATGCCAA-GACATGGCAATGGTAAGTTC
* * * *
73934220 ATAAGGCAAGGATACCACGTAAGACCATGTCAAGACATGTCAATGGTAAGTT
1 ATAAGGCAAAGATACCACGTAAAACCATGCCAAGACATGGCAATGGTAAGTT
73934272 TAAAAAGGAA
Statistics
Matches: 44, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
52 1 0.02
53 43 0.98
ACGTcount: A:0.37, C:0.19, G:0.23, T:0.21
Consensus pattern (53 bp):
ATAAGGCAAAGATACCACGTAAAACCATGCCAAGACATGGCAATGGTAAGTTC
Found at i:73948707 original size:29 final size:29
Alignment explanation
Indices: 73948639--73948881 Score: 268
Period size: 29 Copynumber: 8.5 Consensus size: 29
73948629 TCCTTTCCAA
*
73948639 AGATAGCCACAGAGGCTTTCCTTTTAA-AG
1 AGATAGCCACAAAGGC-TTCCTTTTAACAG
** *
73948668 -TCTCA-CCACAAAGGCGTCCTTTTAACAG
1 AGAT-AGCCACAAAGGCTTCCTTTTAACAG
* *
73948696 AGATCA-CCACAAAGACTTCCTTTTAATAG
1 AGAT-AGCCACAAAGGCTTCCTTTTAACAG
*
73948725 AGATAGCCACAAATGCTTCCTTTTAACAG
1 AGATAGCCACAAAGGCTTCCTTTTAACAG
*
73948754 AGGTAGCCACAAAGGCTTCCTTTTAACA-
1 AGATAGCCACAAAGGCTTCCTTTTAACAG
*
73948782 AGGATAGCCACAAAGGCTTCATTTTAACAG
1 A-GATAGCCACAAAGGCTTCCTTTTAACAG
* * *
73948812 AGATAACCACTAAGGCTTCCTTTTAATAG
1 AGATAGCCACAAAGGCTTCCTTTTAACAG
*
73948841 AGATAGCCACAAAGGCAT-CTTTT--CAG
1 AGATAGCCACAAAGGCTTCCTTTTAACAG
*
73948867 AAATAGCCACAAAGG
1 AGATAGCCACAAAGG
73948882 AATCTTTTTA
Statistics
Matches: 183, Mismatches: 25, Indels: 15
0.82 0.11 0.07
Matches are distributed among these distances:
26 16 0.09
27 9 0.05
28 19 0.10
29 138 0.75
30 1 0.01
ACGTcount: A:0.35, C:0.23, G:0.16, T:0.25
Consensus pattern (29 bp):
AGATAGCCACAAAGGCTTCCTTTTAACAG
Found at i:73948907 original size:26 final size:26
Alignment explanation
Indices: 73948847--73948899 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
73948837 ATAGAGATAG
* *
73948847 CCACAAAGGCATCTTTTCAGAAATAG
1 CCACAAAGGAATCTTTTCAGAAATAA
*
73948873 CCACAAAGGAATCTTTTTAGAAATAA
1 CCACAAAGGAATCTTTTCAGAAATAA
73948899 C
1 C
73948900 TAGAAAGGCT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.42, C:0.21, G:0.13, T:0.25
Consensus pattern (26 bp):
CCACAAAGGAATCTTTTCAGAAATAA
Found at i:73956157 original size:21 final size:21
Alignment explanation
Indices: 73956131--73956172 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
73956121 CAAAAATAGG
73956131 GGACACACACCTGTGTGACTC
1 GGACACACACCTGTGTGACTC
*
73956152 GGACACACGCCTGTGTGACTC
1 GGACACACACCTGTGTGACTC
73956173 TGCCGTGTGT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.21, C:0.33, G:0.26, T:0.19
Consensus pattern (21 bp):
GGACACACACCTGTGTGACTC
Found at i:73958194 original size:20 final size:21
Alignment explanation
Indices: 73958158--73958196 Score: 55
Period size: 20 Copynumber: 1.9 Consensus size: 21
73958148 TTTGTATAAG
73958158 TATCATTAAACATTCAAAATC
1 TATCATTAAACATTCAAAATC
73958179 TATCA-TAAATCA-TCAAAA
1 TATCATTAAA-CATTCAAAA
73958197 CACACATGTA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
20 10 0.59
21 7 0.41
ACGTcount: A:0.51, C:0.18, G:0.00, T:0.31
Consensus pattern (21 bp):
TATCATTAAACATTCAAAATC
Found at i:73965401 original size:19 final size:17
Alignment explanation
Indices: 73965354--73965404 Score: 59
Period size: 19 Copynumber: 2.8 Consensus size: 17
73965344 TATCATTAGC
73965354 TTAAGTTAATTAA-AGA
1 TTAAGTTAATTAATAGA
73965370 TTAAGGTTTAATTAATCATGA
1 TTAA-G-TTAATTAAT-A-GA
73965391 TTAAGTTAATTAAT
1 TTAAGTTAATTAAT
73965405 TAAGCTTAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
16 4 0.13
17 1 0.03
18 8 0.27
19 9 0.30
20 2 0.07
21 6 0.20
ACGTcount: A:0.43, C:0.02, G:0.12, T:0.43
Consensus pattern (17 bp):
TTAAGTTAATTAATAGA
Found at i:73966609 original size:19 final size:19
Alignment explanation
Indices: 73966475--73966614 Score: 95
Period size: 19 Copynumber: 7.4 Consensus size: 19
73966465 GTATGGGATT
* *
73966475 ATGCACTT-ATGCGCCAGA
1 ATGCACTTCATGTGCCAGG
* * *
73966493 ATGCATTTCGTGTGTCAGG
1 ATGCACTTCATGTGCCAGG
* * *
73966512 ATG-ATCTTCGTGTGCTAGT
1 ATGCA-CTTCATGTGCCAGG
* ** *
73966531 ATGCGCTTTGTGTGCCAAG
1 ATGCACTTCATGTGCCAGG
* * * * *
73966550 ATACGCTTTATGCGCCAAG
1 ATGCACTTCATGTGCCAGG
*
73966569 ATGCACTTCATGTGCCAAG
1 ATGCACTTCATGTGCCAGG
73966588 ATGCACTTCATGTGCCAGG
1 ATGCACTTCATGTGCCAGG
73966607 ATGCACTT
1 ATGCACTT
73966615 TGCACAGTGA
Statistics
Matches: 97, Mismatches: 22, Indels: 5
0.78 0.18 0.04
Matches are distributed among these distances:
18 8 0.08
19 89 0.92
ACGTcount: A:0.21, C:0.23, G:0.25, T:0.31
Consensus pattern (19 bp):
ATGCACTTCATGTGCCAGG
Found at i:73966610 original size:38 final size:38
Alignment explanation
Indices: 73966475--73966614 Score: 113
Period size: 38 Copynumber: 3.7 Consensus size: 38
73966465 GTATGGGATT
* * * *
73966475 ATGCACTT-ATGCGCCAGAATGCATTTCGTGTGTCAGG
1 ATGCACTTCATGCGCCAGGATGCACTTCGTGTGCCAAG
* * * * * *
73966512 ATG-ATCTTCGTGTGCTAGTATGCGCTTTGTGTGCCAAG
1 ATGCA-CTTCATGCGCCAGGATGCACTTCGTGTGCCAAG
* * * * *
73966550 ATACGCTTTATGCGCCAAGATGCACTTCATGTGCCAAG
1 ATGCACTTCATGCGCCAGGATGCACTTCGTGTGCCAAG
*
73966588 ATGCACTTCATGTGCCAGGATGCACTT
1 ATGCACTTCATGCGCCAGGATGCACTT
73966615 TGCACAGTGA
Statistics
Matches: 75, Mismatches: 25, Indels: 5
0.71 0.24 0.05
Matches are distributed among these distances:
36 1 0.01
37 6 0.08
38 68 0.91
ACGTcount: A:0.21, C:0.23, G:0.25, T:0.31
Consensus pattern (38 bp):
ATGCACTTCATGCGCCAGGATGCACTTCGTGTGCCAAG
Found at i:73972013 original size:30 final size:29
Alignment explanation
Indices: 73971955--73972140 Score: 150
Period size: 29 Copynumber: 6.4 Consensus size: 29
73971945 AAAAAGTGCA
* *
73971955 TTTGTGGCTATCTGTGTTAAAAGAAAGCC
1 TTTGTGGCTATCTCTGTTAAAAGGAAGCC
* *
73971984 TTTGGGGCTATCTCTATTAAAAAGGAAGCC
1 TTTGTGGCTATCTCTGTT-AAAAGGAAGCC
* * *
73972014 TTTGTGGCGATCTCTTTTAAAAGGAAACC
1 TTTGTGGCTATCTCTGTTAAAAGGAAGCC
*
73972043 TTTGTGGC-AGTCTTTGTTAAAAGGAAGCC
1 TTTGTGGCTA-TCTCTGTTAAAAGGAAGCC
* * * *
73972072 ATTGTGGCAATATCTG-TCAAAGGACA-CC
1 TTTGTGGCTATCTCTGTTAAAAGGA-AGCC
* *
73972100 TTTGTGGCGAGACTCTG---AAAGGAAAGCC
1 TTTGTGGCTA-TCTCTGTTAAAAGG-AAGCC
*
73972128 TTTGTAGCTATCT
1 TTTGTGGCTATCT
73972141 TTGAAAAGGA
Statistics
Matches: 128, Mismatches: 22, Indels: 16
0.77 0.13 0.10
Matches are distributed among these distances:
27 8 0.06
28 29 0.23
29 65 0.51
30 26 0.20
ACGTcount: A:0.27, C:0.17, G:0.24, T:0.32
Consensus pattern (29 bp):
TTTGTGGCTATCTCTGTTAAAAGGAAGCC
Found at i:73972020 original size:59 final size:58
Alignment explanation
Indices: 73971955--73972088 Score: 146
Period size: 59 Copynumber: 2.3 Consensus size: 58
73971945 AAAAAGTGCA
73971955 TTTGTGGCTATCTGTGTTAAAA-GAAAGCCTTTGGGGCTA-TCTCTATTAAAAAGGAAGCC
1 TTTGTGGCTATCTGTGTTAAAAGGAAA-CCTTTGGGGC-AGTCTCTATT-AAAAGGAAGCC
* * * * * *
73972014 TTTGTGGCGATCTCTTTTAAAAGGAAACCTTTGTGGCAGTCTTTGTTAAAAGGAAGCC
1 TTTGTGGCTATCTGTGTTAAAAGGAAACCTTTGGGGCAGTCTCTATTAAAAGGAAGCC
*
73972072 ATTGTGGCAATATCTGT
1 TTTGTGGC--TATCTGT
73972089 CAAAGGACAC
Statistics
Matches: 62, Mismatches: 9, Indels: 7
0.79 0.12 0.09
Matches are distributed among these distances:
58 19 0.31
59 34 0.55
60 9 0.15
ACGTcount: A:0.27, C:0.15, G:0.24, T:0.34
Consensus pattern (58 bp):
TTTGTGGCTATCTGTGTTAAAAGGAAACCTTTGGGGCAGTCTCTATTAAAAGGAAGCC
Found at i:73974560 original size:39 final size:39
Alignment explanation
Indices: 73974507--73974657 Score: 203
Period size: 39 Copynumber: 3.9 Consensus size: 39
73974497 TGCATGATAT
* *
73974507 TGGGAATATATCCGGACATGAGGTCCGCAGGCTATATGT
1 TGGGAATATATCCGGACATGAAGTCCGCAGGCTATATGC
*
73974546 TGGGAATATATCCGGACATGAGGTCCGCAGGCTATATGC
1 TGGGAATATATCCGGACATGAAGTCCGCAGGCTATATGC
* * * *
73974585 TGAGAATATATCCGAACTTGAAGTCCGCAGGCTATGTGC
1 TGGGAATATATCCGGACATGAAGTCCGCAGGCTATATGC
* * * *
73974624 TGGAAATATATTCGGACTTGAAGTCTGCAGGCTA
1 TGGGAATATATCCGGACATGAAGTCCGCAGGCTA
73974658 CGTGCTGGAA
Statistics
Matches: 101, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 101 1.00
ACGTcount: A:0.27, C:0.19, G:0.28, T:0.26
Consensus pattern (39 bp):
TGGGAATATATCCGGACATGAAGTCCGCAGGCTATATGC
Found at i:73996989 original size:31 final size:31
Alignment explanation
Indices: 73996952--73997027 Score: 116
Period size: 31 Copynumber: 2.5 Consensus size: 31
73996942 GTATCCCAAG
*
73996952 CCACACGAGCGTGTATGACCACACGGCCTAC
1 CCACACGGGCGTGTATGACCACACGGCCTAC
* * *
73996983 CTACACGGGCTTGTGTGACCACACGGCCTAC
1 CCACACGGGCGTGTATGACCACACGGCCTAC
73997014 CCACACGGGCGTGT
1 CCACACGGGCGTGT
73997028 GACTCTCCAA
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 39 1.00
ACGTcount: A:0.21, C:0.37, G:0.26, T:0.16
Consensus pattern (31 bp):
CCACACGGGCGTGTATGACCACACGGCCTAC
Found at i:74006360 original size:26 final size:26
Alignment explanation
Indices: 74006324--74006409 Score: 109
Period size: 26 Copynumber: 3.3 Consensus size: 26
74006314 CCACAGCTTA
74006324 TGTGAGCAGACCCATTTCATGGCTCG
1 TGTGAGCAGACCCATTTCATGGCTCG
* *
74006350 TGTGAGTAGACCCATTTCACGGCTCG
1 TGTGAGCAGACCCATTTCATGGCTCG
* * * *
74006376 AGTAAGCAGGCCCATTTCATAGCTCG
1 TGTGAGCAGACCCATTTCATGGCTCG
*
74006402 TTTGAGCA
1 TGTGAGCA
74006410 TTGATGTAAA
Statistics
Matches: 49, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.22, C:0.26, G:0.26, T:0.27
Consensus pattern (26 bp):
TGTGAGCAGACCCATTTCATGGCTCG
Found at i:74007669 original size:23 final size:21
Alignment explanation
Indices: 74007634--74007682 Score: 55
Period size: 23 Copynumber: 2.2 Consensus size: 21
74007624 GTTTGGCAAG
74007634 TTAAGATGTTTTGAATGGTATGT
1 TTAAGATGTTTTGAAT-G-ATGT
*
74007657 TTAA-ATGTATTTGGATGATGT
1 TTAAGATGT-TTTGAATGATGT
74007678 TTAAG
1 TTAAG
74007683 TCCCTTGAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
21 8 0.35
22 5 0.22
23 10 0.43
ACGTcount: A:0.29, C:0.00, G:0.24, T:0.47
Consensus pattern (21 bp):
TTAAGATGTTTTGAATGATGT
Found at i:74014598 original size:43 final size:42
Alignment explanation
Indices: 74014536--74014618 Score: 121
Period size: 43 Copynumber: 2.0 Consensus size: 42
74014526 TACCATACTA
* * *
74014536 ATGCCATATCCCAGATATGGTCTTACATGTAATCTCATATCG
1 ATGCCATAGCCCAGATATGGTCTTACATGAAACCTCATATCG
*
74014578 ATGCCAATAGCCCAGCTATGGTCTTACATGAAACCTCATAT
1 ATGCC-ATAGCCCAGATATGGTCTTACATGAAACCTCATAT
74014619 TGATTGGAAA
Statistics
Matches: 36, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
42 5 0.14
43 31 0.86
ACGTcount: A:0.30, C:0.25, G:0.14, T:0.30
Consensus pattern (42 bp):
ATGCCATAGCCCAGATATGGTCTTACATGAAACCTCATATCG
Found at i:74015846 original size:22 final size:22
Alignment explanation
Indices: 74015821--74015872 Score: 61
Period size: 22 Copynumber: 2.4 Consensus size: 22
74015811 CACTAGGGAC
*
74015821 TATGTGATCTGAGCTCATGAGT-
1 TATGTGACCTGAGCTCATGA-TA
* *
74015843 TATGTGGCCTGGGCTCATGATA
1 TATGTGACCTGAGCTCATGATA
74015865 TATGTGAC
1 TATGTGAC
74015873 ACATGTTATG
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
21 1 0.04
22 24 0.96
ACGTcount: A:0.21, C:0.15, G:0.29, T:0.35
Consensus pattern (22 bp):
TATGTGACCTGAGCTCATGATA
Found at i:74022658 original size:29 final size:29
Alignment explanation
Indices: 74022619--74022697 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
74022609 CTTAATAATC
*
74022619 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
74022649 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
74022678 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
74022698 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:74030713 original size:29 final size:29
Alignment explanation
Indices: 74030674--74030752 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
74030664 CTTAATAATC
*
74030674 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
74030704 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
74030733 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
74030753 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:74032685 original size:28 final size:30
Alignment explanation
Indices: 74032614--74032686 Score: 100
Period size: 29 Copynumber: 2.5 Consensus size: 30
74032604 GTCATGAGAT
*
74032614 TGGCACTAAGTGTGCGGGTTTAAATTGTACA
1 TGGCACTAAGTGTGCGAGTTTAAA-TGTACA
74032645 --GCACTAAGTGTGCGAGTTT-AA-GTACA
1 TGGCACTAAGTGTGCGAGTTTAAATGTACA
74032671 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
74032687 CGGTTGATTA
Statistics
Matches: 39, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
26 5 0.13
28 16 0.41
29 18 0.46
ACGTcount: A:0.26, C:0.15, G:0.30, T:0.29
Consensus pattern (30 bp):
TGGCACTAAGTGTGCGAGTTTAAATGTACA
Found at i:74032829 original size:30 final size:29
Alignment explanation
Indices: 74032793--74032861 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
74032783 GCGGAAAAGG
74032793 TAAGTGTGCGAACTTGAAAATGCATGGCAC
1 TAAGTGTGCG-ACTTGAAAATGCATGGCAC
* * * *
74032823 TAAGTGTGTGAGTTTAAAGTGCATGGCAC
1 TAAGTGTGCGACTTGAAAATGCATGGCAC
74032852 TAAGTGTGCG
1 TAAGTGTGCG
74032862 CGGTTGATTA
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
29 25 0.74
30 9 0.26
ACGTcount: A:0.29, C:0.13, G:0.30, T:0.28
Consensus pattern (29 bp):
TAAGTGTGCGACTTGAAAATGCATGGCAC
Found at i:74033008 original size:176 final size:175
Alignment explanation
Indices: 74032645--74033152 Score: 869
Period size: 176 Copynumber: 2.9 Consensus size: 175
74032635 AAATTGTACA
*
74032645 GCACTAAGTGTGCGAGTTT-AAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
*
74032709 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGCGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
74032774 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAAATGCATG
*
74032819 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
74032884 TGTGCGAACCCAATATATAATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTGACCGAGTC
66 TGTGCGAACCCAATATAT-ATTTTCTATAAATTATTTACATTAAGGGTGCGACTTT-ACCGAGTC
74032949 GATTTTGGACAGCAGG-AAAGGTAAGTGTGCGAACTTG-AAATGCATG
129 GATTTTGGACAGC-GGAAAAGGTAAGTGTGCGAACTTGAAAATGCATG
* *
74032995 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGTGCAGTTGATTATTAAGCACTAAA
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACT--A
*
74033060 TGTTGTGCGAAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAG
64 TG-TGTGCG-AACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAG
*
74033125 TCAATTTTGGACAGCGGAAAAGGTAAGT
127 TCGATTTTGGACAGCGGAAAAGGTAAGT
74033153 ACCTTGAGTT
Statistics
Matches: 317, Mismatches: 8, Indels: 14
0.94 0.02 0.04
Matches are distributed among these distances:
174 18 0.06
175 62 0.20
176 104 0.33
177 44 0.14
178 35 0.11
179 42 0.13
180 12 0.04
ACGTcount: A:0.31, C:0.14, G:0.24, T:0.31
Consensus pattern (175 bp):
GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAAATGCATG
Found at i:74040947 original size:29 final size:28
Alignment explanation
Indices: 74040911--74040988 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
74040901 TCATGAGATT
74040911 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
*
74040941 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
74040968 TGGCACTAAGTGTGCGCGGTT
1 -GGCACTAAGTGTGCG-GGTT
74040989 GATTATTAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 5 0.12
29 35 0.81
30 3 0.07
ACGTcount: A:0.26, C:0.15, G:0.31, T:0.28
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:74041206 original size:174 final size:174
Alignment explanation
Indices: 74040941--74041442 Score: 950
Period size: 174 Copynumber: 2.9 Consensus size: 174
74040931 AAATTGTACA
*
74040941 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
*
74041006 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGCGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
74041071 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
*
74041115 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
74041180 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
74041245 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
*
74041289 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCAGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
* *
74041354 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
74041419 TTTTGGACAGCGGAAAAGGTAAGT
131 TTTTGGACAGCGGAAAAGGTAAGT
74041443 ACCTTGAGTT
Statistics
Matches: 321, Mismatches: 7, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
174 321 1.00
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:74043828 original size:13 final size:13
Alignment explanation
Indices: 74043810--74043834 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
74043800 TCTTTTCCTT
74043810 TTTAATTCCTTTC
1 TTTAATTCCTTTC
74043823 TTTAATTCCTTT
1 TTTAATTCCTTT
74043835 TAATTTACTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.20, G:0.00, T:0.64
Consensus pattern (13 bp):
TTTAATTCCTTTC
Found at i:74046843 original size:31 final size:31
Alignment explanation
Indices: 74046805--74046869 Score: 121
Period size: 31 Copynumber: 2.1 Consensus size: 31
74046795 GACACGCTCG
74046805 TGTGAGCAGGTCGTGTGGTCACACATGCCCA
1 TGTGAGCAGGTCGTGTGGTCACACATGCCCA
*
74046836 TGTGAGCAGGTCGTGTGGTCACACTTGCCCA
1 TGTGAGCAGGTCGTGTGGTCACACATGCCCA
74046867 TGT
1 TGT
74046870 CCCTAACCCA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.17, C:0.25, G:0.32, T:0.26
Consensus pattern (31 bp):
TGTGAGCAGGTCGTGTGGTCACACATGCCCA
Found at i:74050040 original size:28 final size:27
Alignment explanation
Indices: 74049977--74050101 Score: 178
Period size: 28 Copynumber: 4.6 Consensus size: 27
74049967 ATATTAAGTC
* *
74049977 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
74050004 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
* *
74050032 CCCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
* *
74050060 CGCACACTTAGTGCTACATAGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
74050087 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
74050102 GCACAACTTA
Statistics
Matches: 91, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
27 39 0.43
28 52 0.57
ACGTcount: A:0.31, C:0.30, G:0.13, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:74050120 original size:56 final size:56
Alignment explanation
Indices: 74049979--74050122 Score: 159
Period size: 56 Copynumber: 2.6 Consensus size: 56
74049969 ATTAAGTCCG
* * * *
74049979 CACACTCAGTGCTATATAATC-AACTCGCACACTTAGTGCTACATAATCAAACTCC
1 CACACTTAGTGCTACATACTCAAACCCGCACACTTAGTGCTACATAATCAAACTCC
* * * * *
74050034 CACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCTACATAGTC-AATTCG
1 CACACTTAGTGCTACATACTCAAACCCGCACACTTAGTGCTACATAATCAAACTCC
*
74050089 CACACTTAGTGCTGCACA-ACTTAAACCCGCACAC
1 CACACTTAGTGCT--ACATACTCAAACCCGCACAC
74050123 GTAGCGCCAA
Statistics
Matches: 77, Mismatches: 9, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
55 35 0.45
56 39 0.51
57 3 0.04
ACGTcount: A:0.33, C:0.31, G:0.12, T:0.24
Consensus pattern (56 bp):
CACACTTAGTGCTACATACTCAAACCCGCACACTTAGTGCTACATAATCAAACTCC
Found at i:74058061 original size:28 final size:27
Alignment explanation
Indices: 74057998--74058149 Score: 241
Period size: 27 Copynumber: 5.6 Consensus size: 27
74057988 ATATTAAGTC
* * *
74057998 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
*
74058025 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
74058053 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
74058080 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
*
74058108 CGCACACTTAGTGCTACATAGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
74058135 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
74058150 GCACAATTTA
Statistics
Matches: 119, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
27 66 0.55
28 53 0.45
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAACT
Found at i:74058082 original size:55 final size:55
Alignment explanation
Indices: 74057998--74058149 Score: 259
Period size: 55 Copynumber: 2.8 Consensus size: 55
74057988 ATATTAAGTC
* * *
74057998 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
*
74058053 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
*
74058108 CGCACACTTAGTGCTACATAGTCAATTCGCACACTTAGTGCT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCT
74058150 GCACAATTTA
Statistics
Matches: 92, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
55 92 1.00
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.26
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
Found at i:74062529 original size:30 final size:30
Alignment explanation
Indices: 74062472--74062530 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
74062462 GTCTTTTAAA
** * *
74062472 AATATTTACAAAAAGAGGTATCTAATTTTT
1 AATATTTACAAAAAGAGCAACCAAATTTTT
74062502 AATATTTACAAAAAGAGCAACCAAATTTT
1 AATATTTACAAAAAGAGCAACCAAATTTT
74062531 AAAAATAGTT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.47, C:0.10, G:0.08, T:0.34
Consensus pattern (30 bp):
AATATTTACAAAAAGAGCAACCAAATTTTT
Found at i:74071595 original size:42 final size:42
Alignment explanation
Indices: 74071469--74071595 Score: 166
Period size: 43 Copynumber: 3.0 Consensus size: 42
74071459 CTCAGTACTG
* *
74071469 TATCAATGCCATATCCCAGATATGGTCTTACATGTAATCTCG
1 TATCGATGCCATATCCCAGATATGGTCTTACATGTAATCTCA
* *
74071511 TATCGATGCCAATAGCCCAGATATGGTCTTACACG-AAGTCTCA
1 TATCGATGCC-ATATCCCAGATATGGTCTTACATGTAA-TCTCA
** *
74071554 TATCGATGCCATATCCTTGATATGGTTTTACATGTAATCTCA
1 TATCGATGCCATATCCCAGATATGGTCTTACATGTAATCTCA
74071596 ATAACCCTAA
Statistics
Matches: 73, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
42 35 0.48
43 38 0.52
ACGTcount: A:0.28, C:0.23, G:0.16, T:0.33
Consensus pattern (42 bp):
TATCGATGCCATATCCCAGATATGGTCTTACATGTAATCTCA
Found at i:74076394 original size:20 final size:20
Alignment explanation
Indices: 74076369--74076407 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
74076359 AAAATTTCAA
74076369 TTATTTCAC-ACATTTACAAC
1 TTATTTCACAAC-TTTACAAC
*
74076389 TTATTTTACAACTTTACAA
1 TTATTTCACAACTTTACAA
74076408 AATAGCCCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 15 0.88
21 2 0.12
ACGTcount: A:0.36, C:0.21, G:0.00, T:0.44
Consensus pattern (20 bp):
TTATTTCACAACTTTACAAC
Found at i:74084024 original size:37 final size:37
Alignment explanation
Indices: 74083974--74084160 Score: 320
Period size: 37 Copynumber: 5.1 Consensus size: 37
74083964 CTTTAGCTCA
* * *
74083974 GACAAAATCTCCACACGAAGTTATCGGGTCTTACCCG
1 GACATAATCTCCACACGTAGTCATCGGGTCTTACCCG
*
74084011 GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
1 GACATAATCTCCACACGTAGTCATCGGGTCTTACCCG
*
74084048 GACATAATCTTCACACGTAGTCATCGGGTCTTACCCG
1 GACATAATCTCCACACGTAGTCATCGGGTCTTACCCG
*
74084085 GACATAATCTTCACACGTAGTCATCGGGTCTTACCCG
1 GACATAATCTCCACACGTAGTCATCGGGTCTTACCCG
74084122 GACATAATCTCCACACGTAGTCATCGGGTCTTACCCG
1 GACATAATCTCCACACGTAGTCATCGGGTCTTACCCG
74084159 GA
1 GA
74084161 ATATATTTCC
Statistics
Matches: 145, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 145 1.00
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.24
Consensus pattern (37 bp):
GACATAATCTCCACACGTAGTCATCGGGTCTTACCCG
Found at i:74084426 original size:47 final size:47
Alignment explanation
Indices: 74084365--74084549 Score: 289
Period size: 47 Copynumber: 3.9 Consensus size: 47
74084355 TACATATATT
* * * *
74084365 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* *
74084412 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
*
74084459 TCACATTGGCCATTTGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
**
74084506 TCACATTGGCCATTCGGCCTTATCACATATATGCACATTCACAT
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACAT
74084550 CACAATTATC
Statistics
Matches: 126, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 126 1.00
ACGTcount: A:0.26, C:0.28, G:0.12, T:0.34
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:74084485 original size:22 final size:22
Alignment explanation
Indices: 74084458--74084533 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
74084448 GCTCACATTC
74084458 ATCACATTGGCCATTTGGCCTT
1 ATCACATTGGCCATTTGGCCTT
* ** *
74084480 ATCACATATATG-CATGTTCACATT
1 ATCACAT-T-GGCCAT-TTGGCCTT
*
74084504 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTTGGCCTT
74084527 ATCACAT
1 ATCACAT
74084534 ATATGCACAT
Statistics
Matches: 40, Mismatches: 9, Indels: 10
0.68 0.15 0.17
Matches are distributed among these distances:
22 14 0.35
23 9 0.22
24 10 0.25
25 7 0.17
ACGTcount: A:0.25, C:0.28, G:0.13, T:0.34
Consensus pattern (22 bp):
ATCACATTGGCCATTTGGCCTT
Found at i:74088997 original size:43 final size:42
Alignment explanation
Indices: 74088927--74089055 Score: 125
Period size: 43 Copynumber: 3.0 Consensus size: 42
74088917 CACTCAGTAC
* * * *
74088927 CATATCAATGCCATATCCTAGATATGGTCTTACATGTAATCT
1 CATATCGATGCAATAGCCCAGATATGGTCTTACATGTAATCT
* * *
74088969 CGTATCGATGCCAATAGCCCAGCTATGGTTTTACATG-AAGTCT
1 CATATCGATG-CAATAGCCCAGATATGGTCTTACATGTAA-TCT
** * * *
74089012 CATATCGATGTTATATCCCTGATATGGTCTTACACGTAATCT
1 CATATCGATGCAATAGCCCAGATATGGTCTTACATGTAATCT
74089054 CA
1 CA
74089056 GTAACCATAA
Statistics
Matches: 69, Mismatches: 15, Indels: 6
0.77 0.17 0.07
Matches are distributed among these distances:
42 34 0.49
43 35 0.51
ACGTcount: A:0.28, C:0.22, G:0.16, T:0.34
Consensus pattern (42 bp):
CATATCGATGCAATAGCCCAGATATGGTCTTACATGTAATCT
Found at i:74089055 original size:42 final size:43
Alignment explanation
Indices: 74088927--74089055 Score: 131
Period size: 42 Copynumber: 3.0 Consensus size: 43
74088917 CACTCAGTAC
*
74088927 CATATCAATGCC-ATAT-CCTAGATATGGTCTTACATGTAATCT
1 CATATCGATGCCAATATCCCT-GATATGGTCTTACATGTAATCT
* * * * *
74088969 CGTATCGATGCCAATAGCCCAGCTATGGTTTTACATG-AAGTCT
1 CATATCGATGCCAATATCCCTGATATGGTCTTACATGTAA-TCT
** *
74089012 CATATCGATG-TTATATCCCTGATATGGTCTTACACGTAATCT
1 CATATCGATGCCAATATCCCTGATATGGTCTTACATGTAATCT
74089054 CA
1 CA
74089056 GTAACCATAA
Statistics
Matches: 69, Mismatches: 14, Indels: 8
0.76 0.15 0.09
Matches are distributed among these distances:
42 36 0.52
43 31 0.45
44 2 0.03
ACGTcount: A:0.28, C:0.22, G:0.16, T:0.34
Consensus pattern (43 bp):
CATATCGATGCCAATATCCCTGATATGGTCTTACATGTAATCT
Found at i:74090770 original size:43 final size:42
Alignment explanation
Indices: 74090702--74090828 Score: 139
Period size: 43 Copynumber: 3.0 Consensus size: 42
74090692 CTCAGTACTG
* * * *
74090702 TATCAATGCCATATCCTAGATATGGTCTTACATGTAATCTCG
1 TATCGATGCCATAGCCCAGATATGGTCTTACATGTAATCTCA
* * *
74090744 TATCGATTCCAATAGCCCAGCTATGGTCTTACACG-AAGTCTCA
1 TATCGATGCC-ATAGCCCAGATATGGTCTTACATGTAA-TCTCA
* * *
74090787 TATCGATGCCATATCCCTGATATGGTCTTTCATGTAATCTCA
1 TATCGATGCCATAGCCCAGATATGGTCTTACATGTAATCTCA
74090829 GTAACCCTAA
Statistics
Matches: 69, Mismatches: 13, Indels: 6
0.78 0.15 0.07
Matches are distributed among these distances:
42 34 0.49
43 35 0.51
ACGTcount: A:0.27, C:0.24, G:0.15, T:0.34
Consensus pattern (42 bp):
TATCGATGCCATAGCCCAGATATGGTCTTACATGTAATCTCA
Found at i:74090828 original size:42 final size:42
Alignment explanation
Indices: 74090702--74090828 Score: 141
Period size: 42 Copynumber: 3.0 Consensus size: 42
74090692 CTCAGTACTG
* *
74090702 TATCAATGCCATAT-CCTAGATATGGTCTTACATGTAATCTCG
1 TATCGATGCCATATCCCT-GATATGGTCTTACATGTAATCTCA
* * * * *
74090744 TATCGATTCCAATAGCCCAGCTATGGTCTTACACG-AAGTCTCA
1 TATCGATGCC-ATATCCCTGATATGGTCTTACATGTAA-TCTCA
*
74090787 TATCGATGCCATATCCCTGATATGGTCTTTCATGTAATCTCA
1 TATCGATGCCATATCCCTGATATGGTCTTACATGTAATCTCA
74090829 GTAACCCTAA
Statistics
Matches: 68, Mismatches: 13, Indels: 8
0.76 0.15 0.09
Matches are distributed among these distances:
42 34 0.50
43 32 0.47
44 2 0.03
ACGTcount: A:0.27, C:0.24, G:0.15, T:0.34
Consensus pattern (42 bp):
TATCGATGCCATATCCCTGATATGGTCTTACATGTAATCTCA
Found at i:74097172 original size:28 final size:28
Alignment explanation
Indices: 74097096--74097173 Score: 102
Period size: 29 Copynumber: 2.8 Consensus size: 28
74097086 ACTGTAAAGT
* * *
74097096 GATTAGGCCTAATGGGCCATATAGATGT
1 GATTGGGCCTAATGGGCCATATAAATGA
74097124 GATTTGGGCCTAATGGGCCATATAAATGA
1 GA-TTGGGCCTAATGGGCCATATAAATGA
* *
74097153 GATTGGGCCTAGTGGTCCATA
1 GATTGGGCCTAATGGGCCATA
74097174 AGCATGTATG
Statistics
Matches: 44, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
28 19 0.43
29 25 0.57
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.28
Consensus pattern (28 bp):
GATTGGGCCTAATGGGCCATATAAATGA
Found at i:74098618 original size:40 final size:40
Alignment explanation
Indices: 74098581--74098804 Score: 269
Period size: 40 Copynumber: 5.7 Consensus size: 40
74098571 GCTACTCGTT
* *
74098581 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
74098621 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
74098661 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * * *
74098701 C-CATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * * * *
74098739 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
74098780 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
74098805 CATCATTCGA
Statistics
Matches: 163, Mismatches: 15, Indels: 12
0.86 0.08 0.06
Matches are distributed among these distances:
38 25 0.15
39 19 0.12
40 106 0.65
41 13 0.08
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:74098764 original size:78 final size:79
Alignment explanation
Indices: 74098581--74098804 Score: 283
Period size: 78 Copynumber: 2.8 Consensus size: 79
74098571 GCTACTCGTT
* *
74098581 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCAC-AATGCCTTCGGGACTTAGCCCG
*
74098645 GATTTAGTAACTCGCA
64 GAATTAGTAACTCGCA
* *
74098661 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACCATGCCTTCGGG-CTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAATGCCTTCGGGACTTAGCCCGGA
*
74098725 ATTAGTATCTCGCA
66 ATTAGTAACTCGCA
* * * * * *
74098739 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCACAATGCCTTCGGGACTTAGCCCG
74098803 GA
64 GA
74098805 CATCATTCGA
Statistics
Matches: 126, Mismatches: 14, Indels: 8
0.85 0.09 0.05
Matches are distributed among these distances:
77 3 0.02
78 48 0.38
79 26 0.21
80 47 0.37
81 2 0.02
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAATGCCTTCGGGACTTAGCCCGGA
ATTAGTAACTCGCA
Found at i:74098764 original size:118 final size:119
Alignment explanation
Indices: 74098584--74098804 Score: 297
Period size: 118 Copynumber: 1.9 Consensus size: 119
74098574 ACTCGTTCAA
* *
74098584 ATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATT
1 ATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATA
*
74098649 TAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
66 TAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
* * **
74098703 ATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGGA
1 ATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGA
* * *
74098765 TATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 TATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGA
74098805 CATCATTCGA
Statistics
Matches: 89, Mismatches: 10, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
117 4 0.04
118 66 0.74
119 19 0.21
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (119 bp):
ATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATA
TAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
Found at i:74099999 original size:56 final size:56
Alignment explanation
Indices: 74099932--74100051 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
74099922 TATTAGTTTA
74099932 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
*
74099988 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
74100044 TTGCCCAT
1 TTGCCCAT
74100052 CATCCCTTGT
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.23, C:0.23, G:0.09, T:0.45
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:74106539 original size:40 final size:40
Alignment explanation
Indices: 74106502--74106725 Score: 278
Period size: 40 Copynumber: 5.7 Consensus size: 40
74106492 GCTACTCGTT
* *
74106502 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
74106542 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
74106582 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * *
74106622 CCAATGCCTTCGGG-CTTAACCC-GAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * * * *
74106660 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
74106701 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
74106726 CATCATTCGA
Statistics
Matches: 163, Mismatches: 15, Indels: 12
0.86 0.08 0.06
Matches are distributed among these distances:
37 2 0.01
38 24 0.15
39 14 0.09
40 110 0.67
41 13 0.08
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:74108005 original size:56 final size:56
Alignment explanation
Indices: 74107853--74108027 Score: 343
Period size: 56 Copynumber: 3.1 Consensus size: 56
74107843 TATTAGTTTA
74107853 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
74107909 TTGCCCATGC-TCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
74107964 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
74108020 TTGCCCAT
1 TTGCCCAT
74108028 CATCCATTGT
Statistics
Matches: 118, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
55 55 0.47
56 63 0.53
ACGTcount: A:0.23, C:0.24, G:0.09, T:0.44
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:74109878 original size:27 final size:27
Alignment explanation
Indices: 74109847--74110074 Score: 258
Period size: 27 Copynumber: 8.4 Consensus size: 27
74109837 CCCCAAAATA
** *
74109847 GGTAAAATGACTATAATACCCCTGTAG
1 GGTAAAATGACCGTAATGCCCCTGTAG
74109874 GGTAAAATGACCGTAATGCCCCTGTAG
1 GGTAAAATGACCGTAATGCCCCTGTAG
*
74109901 GGTAAAATAACCGTAATGCCCCTGTAG
1 GGTAAAATGACCGTAATGCCCCTGTAG
* ** *
74109928 GGCCAAAATGACTATAATGCCCTTGTAAG
1 GG-TAAAATGACCGTAATGCCCCTGT-AG
** * * * * *
74109957 GCCAAAATGACTGTAGTTCTCCTTTAG
1 GGTAAAATGACCGTAATGCCCCTGTAG
74109984 GGTAAAATGACCGTAATGCCCCTGTAG
1 GGTAAAATGACCGTAATGCCCCTGTAG
*
74110011 GGTAAAATGACCATAATGCCCCTGTAG
1 GGTAAAATGACCGTAATGCCCCTGTAG
* * * *
74110038 GGTACAATGACCGTAATACCCATGTAT
1 GGTAAAATGACCGTAATGCCCCTGTAG
74110065 GGTAAAATGA
1 GGTAAAATGA
74110075 AGATTATGAC
Statistics
Matches: 169, Mismatches: 30, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
27 131 0.78
28 35 0.21
29 3 0.02
ACGTcount: A:0.33, C:0.21, G:0.22, T:0.25
Consensus pattern (27 bp):
GGTAAAATGACCGTAATGCCCCTGTAG
Found at i:74109988 original size:83 final size:82
Alignment explanation
Indices: 74109850--74110072 Score: 261
Period size: 83 Copynumber: 2.7 Consensus size: 82
74109840 CAAAATAGGT
* **
74109850 AAAATGACTATAATACCCCTGT-AGGGTAAAATGACCGTAATGCCCCTGTAGGGTAAAATAACCG
1 AAAATGACTATAATGCCCCTGTAAGGCCAAAATGACCGTAATGCCCCTGTAGGGTAAAATAACCG
74109914 TAATGCCCCTGTAGGGCC
66 TAATGCCCCTGTAGGG-C
* * * * * * *
74109932 AAAATGACTATAATGCCCTTGTAAGGCCAAAATGACTGTAGTTCTCCTTTAGGGTAAAATGACCG
1 AAAATGACTATAATGCCCCTGTAAGGCCAAAATGACCGTAATGCCCCTGTAGGGTAAAATAACCG
*
74109997 TAATGCCCCTGTAGGGT
66 TAATGCCCCTGTAGGGC
* ** * * * *
74110014 AAAATGACCATAATGCCCCTGT-AGGGTACAATGACCGTAATACCCATGTATGGTAAAAT
1 AAAATGACTATAATGCCCCTGTAAGGCCAAAATGACCGTAATGCCCCTGTAGGGTAAAAT
74110073 GAAGATTATG
Statistics
Matches: 117, Mismatches: 23, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
81 27 0.23
82 40 0.34
83 50 0.43
ACGTcount: A:0.33, C:0.21, G:0.21, T:0.25
Consensus pattern (82 bp):
AAAATGACTATAATGCCCCTGTAAGGCCAAAATGACCGTAATGCCCCTGTAGGGTAAAATAACCG
TAATGCCCCTGTAGGGC
Found at i:74110261 original size:27 final size:27
Alignment explanation
Indices: 74110212--74110275 Score: 76
Period size: 27 Copynumber: 2.4 Consensus size: 27
74110202 TGGAGGAAGT
*
74110212 ACTG-TACTGGTGACTATGTCACATTC
1 ACTGTTACTGGTGACTATGCCACATTC
* * *
74110238 ACTGTTACTGGTGGCTTTGCCACATTT
1 ACTGTTACTGGTGACTATGCCACATTC
*
74110265 ACTGTTTCTGG
1 ACTGTTACTGG
74110276 CAGCTATGCT
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
26 4 0.12
27 28 0.88
ACGTcount: A:0.17, C:0.22, G:0.22, T:0.39
Consensus pattern (27 bp):
ACTGTTACTGGTGACTATGCCACATTC
Found at i:74110289 original size:27 final size:27
Alignment explanation
Indices: 74110225--74110304 Score: 72
Period size: 27 Copynumber: 3.0 Consensus size: 27
74110215 GTACTGGTGA
* **
74110225 CTATGTCACATTCACTGTTACTGGTGG
1 CTATGCCACATTCACTGTTACTGGCAG
* * *
74110252 CTTTGCCACATTTACTGTTTCTGGCAG
1 CTATGCCACATTCACTGTTACTGGCAG
* * *
74110279 CTATGCTACATT-ATTATTACTGGCAG
1 CTATGCCACATTCACTGTTACTGGCAG
74110305 TTTTGTTGCG
Statistics
Matches: 42, Mismatches: 11, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
26 11 0.26
27 31 0.74
ACGTcount: A:0.20, C:0.23, G:0.19, T:0.39
Consensus pattern (27 bp):
CTATGCCACATTCACTGTTACTGGCAG
Found at i:74139894 original size:40 final size:40
Alignment explanation
Indices: 74139864--74140073 Score: 314
Period size: 40 Copynumber: 5.3 Consensus size: 40
74139854 GGACTAAGAT
* * * **
74139864 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
74139904 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
74139944 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
74139984 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
* ** * * *
74140024 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
74140063 CCGAAGGCATT
1 CCGAAGGCATT
74140074 TGAACGAGGA
Statistics
Matches: 159, Mismatches: 11, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 33 0.21
40 126 0.79
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
Found at i:74147806 original size:40 final size:40
Alignment explanation
Indices: 74147776--74147985 Score: 314
Period size: 40 Copynumber: 5.3 Consensus size: 40
74147766 GGACTAAGAT
* * * **
74147776 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
74147816 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
74147856 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
74147896 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
* ** * * *
74147936 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
74147975 CCGAAGGCATT
1 CCGAAGGCATT
74147986 TGAACGAGGA
Statistics
Matches: 159, Mismatches: 11, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 33 0.21
40 126 0.79
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
Found at i:74151798 original size:47 final size:47
Alignment explanation
Indices: 74151744--74151929 Score: 282
Period size: 47 Copynumber: 4.0 Consensus size: 47
74151734 TTAGGATTTT
** * *
74151744 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
74151791 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
74151838 ATGTGATGAATGTGAGCATGCATATCTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * *
74151885 ATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATGGC
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGC
74151930 TAATATGAAT
Statistics
Matches: 127, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 127 1.00
ACGTcount: A:0.33, C:0.12, G:0.29, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:74151844 original size:22 final size:22
Alignment explanation
Indices: 74151773--74151844 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
74151763 GTATATATGA
74151773 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
* * *
74151795 GATGAATG-TGAACAT-GCATATATGT
1 GAT-AAGGCCG-A-ATGGC-CA-ATGT
74151820 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
74151842 GAT
1 GAT
74151845 GAATGTGAGC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 11 0.30
23 9 0.24
24 9 0.24
25 8 0.22
ACGTcount: A:0.33, C:0.14, G:0.29, T:0.24
Consensus pattern (22 bp):
GATAAGGCCGAATGGCCAATGT
Found at i:74151993 original size:48 final size:48
Alignment explanation
Indices: 74151907--74152186 Score: 408
Period size: 48 Copynumber: 5.8 Consensus size: 48
74151897 TGAACATGCA
*
74151907 TATATGTGGTAAAGCCGAATGGCTAATATG-AATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
74151954 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
74152002 CTAT-TGTGGTAAAGCCGAATGG-TCAATGTGAAATATATGTATGAGATATG
1 -TATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATGTATGAGATATG
*
74152052 TATATGTGGTAAAGACGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* * *
74152100 CATATGTGGTAAAGCCGAATGG-TCAATGTGAATATATATATGATATATG
1 TATATGTGGTAAAGCCGAATGGCT-AATGTGAA-ATATGTATGAGATATG
* *
74152149 TATATGTGATAAAGCCGAATGGCTAGTG-GAAATATGTA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
74152187 GGCGATGTGC
Statistics
Matches: 213, Mismatches: 10, Indels: 20
0.88 0.04 0.08
Matches are distributed among these distances:
47 37 0.17
48 88 0.41
49 47 0.22
50 40 0.19
51 1 0.00
ACGTcount: A:0.36, C:0.07, G:0.26, T:0.31
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
Found at i:74152053 original size:98 final size:98
Alignment explanation
Indices: 74151902--74152186 Score: 447
Period size: 98 Copynumber: 2.9 Consensus size: 98
74151892 GAATATGAAC
*
74151902 ATGCATATATGTGGTAAAGCCGAATGG-CTAATATG-A-ATATGTATGAGATATGTATATGTGGT
1 ATGC-TATATGTGGTAAAGCCGAATGGTC-AATGTGAATATATGTATGAGATATGTATATGTGGT
74151964 AAAGCCGAATGGCTAATGTGAAATATGTATGAGAT
64 AAAGCCGAATGGCTAATGTGAAATATGTATGAGAT
74151999 ATGCTAT-TGTGGTAAAGCCGAATGGTCAATGTGAAATATATGTATGAGATATGTATATGTGGTA
1 ATGCTATATGTGGTAAAGCCGAATGGTCAATGTG-AATATATGTATGAGATATGTATATGTGGTA
*
74152063 AAGACGAATGGCTAATGTGAAATATGTATGAGAT
65 AAGCCGAATGGCTAATGTGAAATATGTATGAGAT
* * *
74152097 ATGC-ATATGTGGTAAAGCCGAATGGTCAATGTGAATATATATATGATATATGTATATGTGATAA
1 ATGCTATATGTGGTAAAGCCGAATGGTCAATGTGAATATATGTATGAGATATGTATATGTGGTAA
*
74152161 AGCCGAATGGCTAGTG-GAAATATGTA
66 AGCCGAATGGCTAATGTGAAATATGTA
74152187 GGCGATGTGC
Statistics
Matches: 176, Mismatches: 7, Indels: 11
0.91 0.04 0.06
Matches are distributed among these distances:
95 23 0.13
96 14 0.08
97 49 0.28
98 90 0.51
ACGTcount: A:0.36, C:0.07, G:0.26, T:0.31
Consensus pattern (98 bp):
ATGCTATATGTGGTAAAGCCGAATGGTCAATGTGAATATATGTATGAGATATGTATATGTGGTAA
AGCCGAATGGCTAATGTGAAATATGTATGAGAT
Found at i:74152402 original size:39 final size:36
Alignment explanation
Indices: 74152331--74152435 Score: 146
Period size: 37 Copynumber: 2.9 Consensus size: 36
74152321 GGAAATATAT
74152331 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT-TG
74152368 TCCGGGTAAGACCCGATTGGACTACGTGTGGAGATTTG
1 TCCGGGTAAGACCCGA-T-GACTACGTGTGGAGATTTG
*
74152406 TCTGGGTAA-A-CCGAT-ACT-CGTGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
74152436 CGTCTGACCT
Statistics
Matches: 65, Mismatches: 1, Indels: 9
0.87 0.01 0.12
Matches are distributed among these distances:
32 12 0.18
33 3 0.05
35 1 0.02
36 4 0.06
37 17 0.26
38 11 0.17
39 17 0.26
ACGTcount: A:0.23, C:0.18, G:0.32, T:0.27
Consensus pattern (36 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTG
Found at i:74152428 original size:32 final size:36
Alignment explanation
Indices: 74152334--74152441 Score: 143
Period size: 32 Copynumber: 3.0 Consensus size: 36
74152324 AATATATTCC
*
74152334 GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCC
1 GGGTAAGACCCGATGACTACGTGTGGAGATT-TGTCT
74152371 GGGTAAGACCCGATTGGACTACGTGTGGAGATTTGTCT
1 GGGTAAGACCCGA-T-GACTACGTGTGGAGATTTGTCT
*
74152409 GGGTAA-A-CCGAT-ACT-CGTGTGGAGATTCGTCT
1 GGGTAAGACCCGATGACTACGTGTGGAGATTTGTCT
74152441 G
1 G
74152442 ACCTAAAAGG
Statistics
Matches: 67, Mismatches: 2, Indels: 9
0.86 0.03 0.12
Matches are distributed among these distances:
32 17 0.25
33 3 0.04
35 1 0.01
36 4 0.06
37 14 0.21
38 11 0.16
39 17 0.25
ACGTcount: A:0.22, C:0.18, G:0.33, T:0.27
Consensus pattern (36 bp):
GGGTAAGACCCGATGACTACGTGTGGAGATTTGTCT
Found at i:74163756 original size:43 final size:42
Alignment explanation
Indices: 74163708--74163866 Score: 169
Period size: 43 Copynumber: 3.7 Consensus size: 42
74163698 AGCATATACA
* * *
74163708 ATGCCAACATCCCAGACGTGGTCTTACATGTAATCAAACGTCG
1 ATGCCAACGTCCCAGACATGGTCTTACACGTAATCAAA-GTCG
* *
74163751 ATGCC-ACTGTCCCAGACATGGTCTTACACGAAATCAGA-TACG
1 ATGCCAAC-GTCCCAGACATGGTCTTACACGTAATCAAAGT-CG
* * *
74163793 ATGCCAATGTCCCAGACATGGTCTTACACGTAAAACAAAAGTCA
1 ATGCCAACGTCCCAGACATGGTCTTACACGT-AATC-AAAGTCG
**
74163837 ATGCCAACGTCCCAGATGTGGTCTTACACG
1 ATGCCAACGTCCCAGACATGGTCTTACACG
74163867 ATATCACATA
Statistics
Matches: 97, Mismatches: 13, Indels: 11
0.80 0.11 0.09
Matches are distributed among these distances:
41 1 0.01
42 31 0.32
43 34 0.35
44 30 0.31
45 1 0.01
ACGTcount: A:0.31, C:0.28, G:0.19, T:0.22
Consensus pattern (42 bp):
ATGCCAACGTCCCAGACATGGTCTTACACGTAATCAAAGTCG
Found at i:74163865 original size:86 final size:85
Alignment explanation
Indices: 74163703--74163872 Score: 216
Period size: 86 Copynumber: 2.0 Consensus size: 85
74163693 CGGAAAGCAT
* * * * *
74163703 ATACAATGCCAACATCCCAGACGTGGTCTTACATGTAATCAAACGTCGATGCCACTGTCCCAGAC
1 ATACAATGCCAACATCCCAGACATGGTCTTACACGTAAACAAAAGTCAATGCCACTGTCCCAGAC
74163768 ATGGTCTTACACGAAATCAG
66 ATGGTCTTACACGAAATCAG
* **
74163788 ATACGATGCCAATGTCCCAGACATGGTCTTACACGTAAAACAAAAGTCAATGCCAAC-GTCCCAG
1 ATACAATGCCAACATCCCAGACATGGTCTTACACGT-AAACAAAAGTCAATGCC-ACTGTCCCAG
** *
74163852 ATGTGGTCTTACACGATATCA
64 ACATGGTCTTACACGAAATCA
74163873 CATATCGAAA
Statistics
Matches: 72, Mismatches: 11, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
85 31 0.43
86 39 0.54
87 2 0.03
ACGTcount: A:0.33, C:0.27, G:0.18, T:0.22
Consensus pattern (85 bp):
ATACAATGCCAACATCCCAGACATGGTCTTACACGTAAACAAAAGTCAATGCCACTGTCCCAGAC
ATGGTCTTACACGAAATCAG
Done.