Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 226 of 349
Found at i:74166378 original size:23 final size:23
Alignment explanation
Indices: 74166348--74166394 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
74166338 TTCGATAGGG
*
74166348 ATAAAAGCTCTCTCCATGTCCAA
1 ATAAAAGCTCTCTCCATGGCCAA
74166371 ATAAAAGCTCTCTCCATGGCCAA
1 ATAAAAGCTCTCTCCATGGCCAA
74166394 A
1 A
74166395 CCAACCAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.36, C:0.30, G:0.11, T:0.23
Consensus pattern (23 bp):
ATAAAAGCTCTCTCCATGGCCAA
Found at i:74176166 original size:35 final size:35
Alignment explanation
Indices: 74176120--74176188 Score: 120
Period size: 35 Copynumber: 2.0 Consensus size: 35
74176110 GTTTTGAGAG
74176120 GTTAAAGACACTATTAACTGAAGCTCCTATTTTAA
1 GTTAAAGACACTATTAACTGAAGCTCCTATTTTAA
* *
74176155 GTTAAAGACACTGTTAACTGAAGCTCCTGTTTTA
1 GTTAAAGACACTATTAACTGAAGCTCCTATTTTA
74176189 GTATTGCCTG
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 32 1.00
ACGTcount: A:0.33, C:0.17, G:0.14, T:0.35
Consensus pattern (35 bp):
GTTAAAGACACTATTAACTGAAGCTCCTATTTTAA
Found at i:74182156 original size:33 final size:34
Alignment explanation
Indices: 74182107--74182199 Score: 109
Period size: 34 Copynumber: 2.8 Consensus size: 34
74182097 TTGCATATTG
* * *
74182107 TACTGATACTGTAATGGGCTTAGGCCC-CACTGA-
1 TACTGTTACTGAAATGGGCTAAGGCCCACACT-AC
* * *
74182140 TACTGTTATTGAAATGGGCTCAGGCCCAGACTAC
1 TACTGTTACTGAAATGGGCTAAGGCCCACACTAC
74182174 TACTGTTACTGAAATGGGCTAAGGCC
1 TACTGTTACTGAAATGGGCTAAGGCC
74182200 TTAACTGAGA
Statistics
Matches: 51, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
33 24 0.47
34 27 0.53
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.27
Consensus pattern (34 bp):
TACTGTTACTGAAATGGGCTAAGGCCCACACTAC
Found at i:74184103 original size:53 final size:53
Alignment explanation
Indices: 74184035--74184237 Score: 201
Period size: 53 Copynumber: 3.8 Consensus size: 53
74184025 TCCTTTTTTA
* *
74184035 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATG
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATG
* * * * **
74184088 AACTCACCATTGCCATGCCTTGGCATGGTCTTACATGGGATATTTGCCTTAT-
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATG
** * * * * * *
74184140 ATTGGTTTATCAATGTCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTGTAG
1 A---ACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTAT-G
* *
74184197 AACTTACCAATGCCATGCCTTGGCATGGTCTTACTTGGTAT
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTAT
74184238 TCTTAAACCC
Statistics
Matches: 116, Mismatches: 29, Indels: 9
0.75 0.19 0.06
Matches are distributed among these distances:
52 1 0.01
53 46 0.40
54 31 0.27
55 37 0.32
57 1 0.01
ACGTcount: A:0.21, C:0.23, G:0.19, T:0.38
Consensus pattern (53 bp):
AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATG
Found at i:74191577 original size:53 final size:52
Alignment explanation
Indices: 74191493--74191602 Score: 141
Period size: 53 Copynumber: 2.1 Consensus size: 52
74191483 CCTTTCCCTT
* * *
74191493 TTATAACTTACCATTTCCATGTCTTGACATGGTCTTACATGGTATCCTTGCC
1 TTATAACTCACCATTTCCATGCCTTGACATGGTCTTACATGGGATCCTTGCC
* * *
74191545 TTATGAACTCACCATTGT-CATGCCTTGTCATGGTCTTACATGGGATCTTTGTC
1 TTAT-AACTCACCATT-TCCATGCCTTGACATGGTCTTACATGGGATCCTTGCC
74191598 TTATA
1 TTATA
74191603 GTAGTTTATC
Statistics
Matches: 50, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
52 5 0.10
53 44 0.88
54 1 0.02
ACGTcount: A:0.21, C:0.23, G:0.15, T:0.41
Consensus pattern (52 bp):
TTATAACTCACCATTTCCATGCCTTGACATGGTCTTACATGGGATCCTTGCC
Found at i:74194865 original size:40 final size:40
Alignment explanation
Indices: 74194719--74194852 Score: 162
Period size: 40 Copynumber: 3.3 Consensus size: 40
74194709 AACTCATTAC
* *
74194719 AATGCCTTCGGGACTTAACCCTGGATTTTAA-AACTCGCACA
1 AATGCCTTCGGGACTTAAACC-GGA-ATTAATAACTCGCACA
* * *
74194760 CGATTGCCTTCGGGACTTAAACCGGAATTAGTATCTCGCACA
1 --AATGCCTTCGGGACTTAAACCGGAATTAATAACTCGCACA
* *
74194802 AAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAAACCGGAATTAATAACTCGCACA
74194842 AATGCCTTCGG
1 AATGCCTTCGG
74194853 ATCTTAGTCC
Statistics
Matches: 79, Mismatches: 11, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
40 45 0.57
41 3 0.04
42 12 0.15
43 19 0.24
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAAACCGGAATTAATAACTCGCACA
Found at i:74202651 original size:39 final size:40
Alignment explanation
Indices: 74202608--74202775 Score: 148
Period size: 40 Copynumber: 4.2 Consensus size: 40
74202598 CTCGTTCAAG
* * * *
74202608 TGCCTTCGGGACATAGCCCGG-TTATAGTAACTCATAC-AA
1 TGCCTTCGGGACTTAACCCGGATTATA-AAACTCACACGAA
* *
74202647 TGCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAA
1 TGCCTTCGGGACTTAACCCGGATTATAAAACTCACACGAA
* * *
74202687 TGCCTTCGGGACTTAACCCGGAATTAGT--ATCTCGCACAAA
1 TGCCTTCGGGACTTAACCCGG-ATTA-TAAAACTCACACGAA
* * * *
74202727 GGCCTTCGGGACTTAACCCGGAATTA-ATAACTCGCACAAA
1 TGCCTTCGGGACTTAACCCGG-ATTATAAAACTCACACGAA
74202767 TGCCTTCGG
1 TGCCTTCGG
74202776 ATCTTAGTCC
Statistics
Matches: 111, Mismatches: 12, Indels: 11
0.83 0.09 0.08
Matches are distributed among these distances:
39 26 0.23
40 81 0.73
41 3 0.03
42 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
TGCCTTCGGGACTTAACCCGGATTATAAAACTCACACGAA
Found at i:74202759 original size:80 final size:80
Alignment explanation
Indices: 74202643--74202828 Score: 229
Period size: 80 Copynumber: 2.3 Consensus size: 80
74202633 AGTAACTCAT
* * *
74202643 ACAATGCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAATGCCTTCGGGA-CTTAACCCG
1 ACAAAGCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATGCCTTC-GGATCTTAACCCG
*
74202707 GA-ATTAGT-A-TCTCGC
65 GATA-TAGTCACT-TAGC
**
74202722 ACAAAGGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACAAATGCCTTCGGATCTTAGTCC
1 ACAAA-GCCTTCGGGACTTAACCCGGATATTAA-AACTCGCACAAATGCCTTCGGATCTTAACCC
74202786 GGATATAGTCACTTAGC
64 GGATATAGTCACTTAGC
*
74202803 ACAAAGCCTTCGGGACTTAGCCCGGA
1 ACAAAGCCTTCGGGACTTAACCCGGA
74202829 CAGCATTCAA
Statistics
Matches: 94, Mismatches: 7, Indels: 11
0.84 0.06 0.10
Matches are distributed among these distances:
79 11 0.12
80 72 0.77
81 10 0.11
82 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (80 bp):
ACAAAGCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATAGTCACTTAGC
Found at i:74202788 original size:40 final size:40
Alignment explanation
Indices: 74202645--74202828 Score: 205
Period size: 40 Copynumber: 4.6 Consensus size: 40
74202635 TAACTCATAC
* *
74202645 AATGCCTTCGGGACTTAACCCGGATTTTAA-AACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACA
* *
74202685 AATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
*
74202725 AAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
** * * *
74202765 AATGCCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAACCCGGAAT-TAATAAC-TCGCACA
*
74202806 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
74202829 CAGCATTCAA
Statistics
Matches: 124, Mismatches: 14, Indels: 11
0.83 0.09 0.07
Matches are distributed among these distances:
39 8 0.06
40 105 0.85
41 11 0.09
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
Found at i:74213489 original size:28 final size:29
Alignment explanation
Indices: 74213457--74213555 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 29
74213447 ATAATAAGCC
*
74213457 CGCACACTTAGTGCTTA-ATAGTCGAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* *
74213485 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* * *
74213513 CGCACACTTAGTGCTATACA-ATTTGAACC
1 CGCACACTTAGTGCT-TACATAATCGAACT
74213542 CGCACACTTAGTGC
1 CGCACACTTAGTGC
74213556 CAATCTCATG
Statistics
Matches: 61, Mismatches: 7, Indels: 5
0.84 0.10 0.07
Matches are distributed among these distances:
27 2 0.03
28 37 0.61
29 19 0.31
30 3 0.05
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCTTACATAATCGAACT
Found at i:74216326 original size:58 final size:58
Alignment explanation
Indices: 74216236--74216352 Score: 207
Period size: 58 Copynumber: 2.0 Consensus size: 58
74216226 TAAATCACAT
*
74216236 TACATACAAACACAACATTCAATTAACATAATTACATGCCCGATTAAGGTACATGAAC
1 TACATACAAACACAACATTCAATTAACATAATTACATGCCCGATTAAGGTACACGAAC
* *
74216294 TACATACAAACACAACATTCAATTAACATAATTACATGCTCGATTAAGTTACACGAAC
1 TACATACAAACACAACATTCAATTAACATAATTACATGCCCGATTAAGGTACACGAAC
74216352 T
1 T
74216353 TACCTCGACA
Statistics
Matches: 56, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
58 56 1.00
ACGTcount: A:0.44, C:0.22, G:0.08, T:0.26
Consensus pattern (58 bp):
TACATACAAACACAACATTCAATTAACATAATTACATGCCCGATTAAGGTACACGAAC
Found at i:74220513 original size:25 final size:24
Alignment explanation
Indices: 74220461--74220521 Score: 72
Period size: 25 Copynumber: 2.5 Consensus size: 24
74220451 ATAGCTCGAA
74220461 CGAGCAATCCTG-TTATAGCTCTCT
1 CGAGC-ATCCTGTTTATAGCTCTCT
74220485 CGAGCATCCTGTTATATAGCTC-CT
1 CGAGCATCCTGTT-TATAGCTCTCT
*
74220509 GCGAGCATACTGT
1 -CGAGCATCCTGT
74220522 GTTGCACACT
Statistics
Matches: 33, Mismatches: 1, Indels: 5
0.85 0.03 0.13
Matches are distributed among these distances:
23 6 0.18
24 8 0.24
25 19 0.58
ACGTcount: A:0.21, C:0.28, G:0.20, T:0.31
Consensus pattern (24 bp):
CGAGCATCCTGTTTATAGCTCTCT
Found at i:74226253 original size:35 final size:35
Alignment explanation
Indices: 74226146--74226418 Score: 259
Period size: 35 Copynumber: 7.8 Consensus size: 35
74226136 CATATGGCCA
* * *
74226146 AATATATAAATTCAATAT-ATCATCACATGTAACCT
1 AATATACAAGTTCAATATAATC-TCACATGTAACCG
* * * * *
74226181 AATGTTCATGTTCAATAAAACATCTCATATTGT---CG
1 AATATACAAGTTCAAT-ATA-ATCTCACA-TGTAACCG
* * *
74226216 AATATACAAATTCAATATAATATCATATGTAACCG
1 AATATACAAGTTCAATATAATCTCACATGTAACCG
* *
74226251 AATATACAAGTTCAATATAAGCTCACATGTAATCG
1 AATATACAAGTTCAATATAATCTCACATGTAACCG
* * *
74226286 AATACACAAGTTCAATATAATCTCACATGCAGCCG
1 AATATACAAGTTCAATATAATCTCACATGTAACCG
* * *
74226321 AATATACAAGTTAAATATAAACTCACATGTAATCG
1 AATATACAAGTTCAATATAATCTCACATGTAACCG
* * * *
74226356 AATACACAAGTTCAATATAACCTCACATGTAGCCA
1 AATATACAAGTTCAATATAATCTCACATGTAACCG
74226391 AATATACAAGTTCAATAT-ATCCTCACAT
1 AATATACAAGTTCAATATAAT-CTCACAT
74226419 ATACTTACCT
Statistics
Matches: 192, Mismatches: 38, Indels: 16
0.78 0.15 0.07
Matches are distributed among these distances:
32 3 0.02
33 7 0.04
34 3 0.02
35 168 0.88
36 1 0.01
37 4 0.02
38 6 0.03
ACGTcount: A:0.43, C:0.19, G:0.08, T:0.30
Consensus pattern (35 bp):
AATATACAAGTTCAATATAATCTCACATGTAACCG
Found at i:74226287 original size:70 final size:70
Alignment explanation
Indices: 74226153--74226418 Score: 293
Period size: 70 Copynumber: 3.8 Consensus size: 70
74226143 CCAAATATAT
* * * * * * **
74226153 AAATTCAATAT-ATCATCACATGTAACCTAATGTTCATGTTCAATA-AAACATCTCATATTGTCG
1 AAATTCAATATAAT-ATCACATGTAACCGAATATACAAGTTCAATATAAAC-TCACATGTAATCG
*
74226216 AATATAC
64 AATACAC
* *
74226223 AAATTCAATATAATATCATATGTAACCGAATATACAAGTTCAATATAAGCTCACATGTAATCGAA
1 AAATTCAATATAATATCACATGTAACCGAATATACAAGTTCAATATAAACTCACATGTAATCGAA
74226288 TACAC
66 TACAC
* * * * *
74226293 AAGTTCAATATAATCTCACATGCAGCCGAATATACAAGTTAAATATAAACTCACATGTAATCGAA
1 AAATTCAATATAATATCACATGTAACCGAATATACAAGTTCAATATAAACTCACATGTAATCGAA
74226358 TACAC
66 TACAC
* ** * * **
74226363 AAGTTCAATATAACCTCACATGTAGCCAAATATACAAGTTCAATATATCCTCACAT
1 AAATTCAATATAATATCACATGTAACCGAATATACAAGTTCAATATAAACTCACAT
74226419 ATACTTACCT
Statistics
Matches: 170, Mismatches: 24, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
70 165 0.97
71 5 0.03
ACGTcount: A:0.43, C:0.20, G:0.08, T:0.29
Consensus pattern (70 bp):
AAATTCAATATAATATCACATGTAACCGAATATACAAGTTCAATATAAACTCACATGTAATCGAA
TACAC
Found at i:74226408 original size:105 final size:105
Alignment explanation
Indices: 74226214--74226418 Score: 288
Period size: 105 Copynumber: 2.0 Consensus size: 105
74226204 CTCATATTGT
* * * *
74226214 CGAATATACAAATTCAATATAATATCATATGTAACCGAATATACAAGTTCAATATAAGCTCACAT
1 CGAATATACAAATTAAATATAATATCACATGTAACCGAATACACAAGTTCAATATAACCTCACAT
* *
74226279 GTAATCGAATACACAAGTTCAATATAAT-CTCACATGCAGC
66 GTAACCAAATACACAAGTTCAATAT-ATCCTCACATGCAGC
* *
74226319 CGAATATACAAGTTAAATATAA-ACTCACATGTAATCGAATACACAAGTTCAATATAACCTCACA
1 CGAATATACAAATTAAATATAATA-TCACATGTAACCGAATACACAAGTTCAATATAACCTCACA
* *
74226383 TGTAGCCAAATATACAAGTTCAATATATCCTCACAT
65 TGTAACCAAATACACAAGTTCAATATATCCTCACAT
74226419 ATACTTACCT
Statistics
Matches: 88, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
104 3 0.03
105 85 0.97
ACGTcount: A:0.44, C:0.20, G:0.09, T:0.27
Consensus pattern (105 bp):
CGAATATACAAATTAAATATAATATCACATGTAACCGAATACACAAGTTCAATATAACCTCACAT
GTAACCAAATACACAAGTTCAATATATCCTCACATGCAGC
Found at i:74228945 original size:27 final size:27
Alignment explanation
Indices: 74228915--74229058 Score: 173
Period size: 27 Copynumber: 5.3 Consensus size: 27
74228905 TACTGAAATG
**
74228915 CCCTCGATTTGTAGAATTACCATTTTA
1 CCCTCGATTTACAGAATTACCATTTTA
*
74228942 CCCTCGATTTATAGAATTACCATTTTA
1 CCCTCGATTTACAGAATTACCATTTTA
** *
74228969 CCCTTAATTTACAGAATTACCGTTTTA
1 CCCTCGATTTACAGAATTACCATTTTA
* *
74228996 CCCTCAATTTACAAAATTACCATTTTA
1 CCCTCGATTTACAGAATTACCATTTTA
* * *
74229023 CCCTC-AGTTTACAAAATTATCGTTTTA
1 CCCTCGA-TTTACAGAATTACCATTTTA
74229050 CCCTCGATT
1 CCCTCGATT
74229059 GTGAAATTAC
Statistics
Matches: 105, Mismatches: 10, Indels: 4
0.88 0.08 0.03
Matches are distributed among these distances:
26 1 0.01
27 103 0.98
28 1 0.01
ACGTcount: A:0.29, C:0.24, G:0.07, T:0.40
Consensus pattern (27 bp):
CCCTCGATTTACAGAATTACCATTTTA
Found at i:74228995 original size:54 final size:54
Alignment explanation
Indices: 74228927--74229058 Score: 192
Period size: 54 Copynumber: 2.4 Consensus size: 54
74228917 CTCGATTTGT
* * * *
74228927 AGAATTACCATTTTACCCTCGATTTATAGAATTACCATTTTACCCTTAATTTAC
1 AGAATTACCGTTTTACCCTCGATTTACAAAATTACCATTTTACCCTCAATTTAC
* *
74228981 AGAATTACCGTTTTACCCTCAATTTACAAAATTACCATTTTACCCTCAGTTTAC
1 AGAATTACCGTTTTACCCTCGATTTACAAAATTACCATTTTACCCTCAATTTAC
* *
74229035 AAAATTATCGTTTTACCCTCGATT
1 AGAATTACCGTTTTACCCTCGATT
74229059 GTGAAATTAC
Statistics
Matches: 69, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 69 1.00
ACGTcount: A:0.31, C:0.23, G:0.06, T:0.39
Consensus pattern (54 bp):
AGAATTACCGTTTTACCCTCGATTTACAAAATTACCATTTTACCCTCAATTTAC
Found at i:74229080 original size:27 final size:27
Alignment explanation
Indices: 74229050--74229240 Score: 138
Period size: 27 Copynumber: 7.1 Consensus size: 27
74229040 TATCGTTTTA
* * *
74229050 CCCTCGATTGTGAAATTACGAAAATAC
1 CCCTAGATTGTAAAATTACCAAAATAC
* * *
74229077 CCCTATA-GGATAGAATTACCAAAATAC
1 CCCTAGATTG-TAAAATTACCAAAATAC
*
74229104 CCCTAGTTTGTAAAATTACCAAAATAC
1 CCCTAGATTGTAAAATTACCAAAATAC
* * **
74229131 CCCTAGTTTGTAAAATCACTGAAATAC
1 CCCTAGATTGTAAAATTACCAAAATAC
** * * * *
74229158 CAATGGTTTGTGAAATTACCGAAATAC
1 CCCTAGATTGTAAAATTACCAAAATAC
*
74229185 CCC-AAATTTGTAAAATTACCAAAATA-
1 CCCTAGA-TTGTAAAATTACCAAAATAC
* *
74229211 CCCTTGATT-TACAAAATTACAAAAATAC
1 CCCTAGATTGT--AAAATTACCAAAATAC
74229239 CC
1 CC
74229241 TTGACTTTCT
Statistics
Matches: 128, Mismatches: 29, Indels: 13
0.75 0.17 0.08
Matches are distributed among these distances:
25 1 0.01
26 6 0.05
27 118 0.92
28 3 0.02
ACGTcount: A:0.41, C:0.21, G:0.10, T:0.27
Consensus pattern (27 bp):
CCCTAGATTGTAAAATTACCAAAATAC
Found at i:74229156 original size:54 final size:54
Alignment explanation
Indices: 74229094--74229240 Score: 152
Period size: 54 Copynumber: 2.7 Consensus size: 54
74229084 GGATAGAATT
* *
74229094 ACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATC
1 ACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCAAATTTGTAAAATC
** ** * * * *
74229148 ACTGAAATACCAATGGTTTGTGAAATTACCGAAATACCCCAAATTTGTAAAATT
1 ACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCAAATTTGTAAAATC
* ** *
74229202 ACCAAAATA-CCCTTGATTTACAAAATTACAAAAATACCC
1 ACCAAAATACCCCTAG-TTTGTAAAATTACCAAAATACCC
74229241 TTGACTTTCT
Statistics
Matches: 72, Mismatches: 20, Indels: 2
0.77 0.21 0.02
Matches are distributed among these distances:
53 3 0.04
54 69 0.96
ACGTcount: A:0.43, C:0.22, G:0.08, T:0.27
Consensus pattern (54 bp):
ACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCAAATTTGTAAAATC
Found at i:74229237 original size:81 final size:81
Alignment explanation
Indices: 74229090--74229239 Score: 203
Period size: 81 Copynumber: 1.9 Consensus size: 81
74229080 TATAGGATAG
* * ** **
74229090 AATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATCACTGAAA
1 AATTACCAAAATACCCCAAATTTGTAAAATTACCAAAATACCCCTAGTTTACAAAATCACAAAAA
74229155 TACCAATGGTTTGTGA
66 TACCAATGGTTTGTGA
* * *
74229171 AATTACCGAAATACCCCAAATTTGTAAAATTACCAAAATA-CCCTTGATTTACAAAATTACAAAA
1 AATTACCAAAATACCCCAAATTTGTAAAATTACCAAAATACCCCTAG-TTTACAAAATCACAAAA
74229235 ATACC
65 ATACC
74229240 CTTGACTTTC
Statistics
Matches: 59, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
80 5 0.08
81 54 0.92
ACGTcount: A:0.43, C:0.21, G:0.08, T:0.28
Consensus pattern (81 bp):
AATTACCAAAATACCCCAAATTTGTAAAATTACCAAAATACCCCTAGTTTACAAAATCACAAAAA
TACCAATGGTTTGTGA
Found at i:74229265 original size:29 final size:27
Alignment explanation
Indices: 74229196--74229298 Score: 109
Period size: 27 Copynumber: 3.7 Consensus size: 27
74229186 CCAAATTTGT
*
74229196 AAAATTACCAAAATACCCTTGATTTAC
1 AAAATTACAAAAATACCCTTGATTTAC
74229223 AAAATTACAAAAATACCCTTGACTTT-C
1 AAAATTACAAAAATACCCTTGA-TTTAC
* * * *
74229250 TAAAAATTATAGAAATACCATTGGTTTAC
1 --AAAATTACAAAAATACCCTTGATTTAC
**
74229279 AAAATTACTGAAATACCCTT
1 AAAATTACAAAAATACCCTT
74229299 ATAGGATGAA
Statistics
Matches: 64, Mismatches: 8, Indels: 8
0.80 0.10 0.10
Matches are distributed among these distances:
27 39 0.61
28 6 0.09
29 19 0.30
ACGTcount: A:0.45, C:0.18, G:0.06, T:0.31
Consensus pattern (27 bp):
AAAATTACAAAAATACCCTTGATTTAC
Found at i:74229394 original size:27 final size:27
Alignment explanation
Indices: 74229329--74229394 Score: 80
Period size: 27 Copynumber: 2.4 Consensus size: 27
74229319 TACCCCTAAT
*
74229329 AGGTAAAACGACCGTAAAGCCCCTGTA
1 AGGTAAAATGACCGTAAAGCCCCTGTA
* *
74229356 AGGTAAAGTGACCGTAATA-CCCTTGTA
1 AGGTAAAATGACCGTAA-AGCCCCTGTA
*
74229383 TGGTAAAATGAC
1 AGGTAAAATGAC
74229395 GAATATGCCC
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
27 32 0.97
28 1 0.03
ACGTcount: A:0.36, C:0.20, G:0.23, T:0.21
Consensus pattern (27 bp):
AGGTAAAATGACCGTAAAGCCCCTGTA
Found at i:74230143 original size:20 final size:20
Alignment explanation
Indices: 74230112--74230188 Score: 118
Period size: 20 Copynumber: 3.9 Consensus size: 20
74230102 ACAAGATTGA
*
74230112 TATGACATGCACATGATATG
1 TATGAAATGCACATGATATG
* *
74230132 TATAAAATGCACATGATAAG
1 TATGAAATGCACATGATATG
*
74230152 TATGAAATGCACATGATATA
1 TATGAAATGCACATGATATG
74230172 TATGAAATGCACATGAT
1 TATGAAATGCACATGAT
74230189 GTATTCATAA
Statistics
Matches: 51, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 51 1.00
ACGTcount: A:0.43, C:0.12, G:0.17, T:0.29
Consensus pattern (20 bp):
TATGAAATGCACATGATATG
Found at i:74231258 original size:24 final size:24
Alignment explanation
Indices: 74231231--74231356 Score: 175
Period size: 24 Copynumber: 5.2 Consensus size: 24
74231221 CTGGAGGCCT
74231231 AGCCTCTTTTAATAATTGGGGCA-A
1 AGCC-CTTTTAATAATTGGGGCATA
74231255 AGCCCTTTTAATAACTT-GGGCATA
1 AGCCCTTTTAATAA-TTGGGGCATA
74231279 AGCCCTTTTAATAATTGGGGCATA
1 AGCCCTTTTAATAATTGGGGCATA
* * *
74231303 ACCCCTTTTAATAACTGGGGCAGA
1 AGCCCTTTTAATAATTGGGGCATA
* *
74231327 ACCCCTTTTAATAACTGGGGCATA
1 AGCCCTTTTAATAATTGGGGCATA
74231351 AGCCCT
1 AGCCCT
74231357 ATTGTACTTC
Statistics
Matches: 94, Mismatches: 5, Indels: 6
0.90 0.05 0.06
Matches are distributed among these distances:
23 17 0.18
24 77 0.82
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.30
Consensus pattern (24 bp):
AGCCCTTTTAATAATTGGGGCATA
Found at i:74231440 original size:11 final size:11
Alignment explanation
Indices: 74231409--74231464 Score: 66
Period size: 11 Copynumber: 5.5 Consensus size: 11
74231399 TTATGAATAC
74231409 ATCATGTGCAT
1 ATCATGTGCAT
*
74231420 ATCA--TACAT
1 ATCATGTGCAT
74231429 ATCATGTGCAT
1 ATCATGTGCAT
*
74231440 ATCA--TACAT
1 ATCATGTGCAT
74231449 ATCATGTGCAT
1 ATCATGTGCAT
74231460 ATCAT
1 ATCAT
74231465 ATTAATCAAT
Statistics
Matches: 37, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
9 16 0.43
11 21 0.57
ACGTcount: A:0.34, C:0.20, G:0.11, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:74231472 original size:20 final size:20
Alignment explanation
Indices: 74231409--74231465 Score: 114
Period size: 20 Copynumber: 2.9 Consensus size: 20
74231399 TTATGAATAC
74231409 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
74231429 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
74231449 ATCATGTGCATATCATA
1 ATCATGTGCATATCATA
74231466 TTAATCAATT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 37 1.00
ACGTcount: A:0.35, C:0.19, G:0.11, T:0.35
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:74233312 original size:25 final size:25
Alignment explanation
Indices: 74233279--74233335 Score: 78
Period size: 25 Copynumber: 2.3 Consensus size: 25
74233269 TTACATATGG
** *
74233279 CCCAGTTTATTGAAAAGGGCTTTGC
1 CCCAGTTTACCGAAAACGGCTTTGC
*
74233304 CCCATTTTACCGAAAACGGCTTTGC
1 CCCAGTTTACCGAAAACGGCTTTGC
74233329 CCCAGTT
1 CCCAGTT
74233336 ATTAAAAGAA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.23, C:0.28, G:0.19, T:0.30
Consensus pattern (25 bp):
CCCAGTTTACCGAAAACGGCTTTGC
Found at i:74233545 original size:42 final size:42
Alignment explanation
Indices: 74233480--74233567 Score: 122
Period size: 42 Copynumber: 2.1 Consensus size: 42
74233470 TAGTCTCCCC
* * ** *
74233480 AAATGGGCTTGCATACATTCATTGGTATTTCATATGATATTG
1 AAATAGGCTTGCATACATCCATTGACATTACATATGATATTG
*
74233522 AAATAGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATAGGCTTGCATACATCCATTGACATTACATATGATATTG
74233564 AAAT
1 AAAT
74233568 TGGCCTATGG
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.33, C:0.14, G:0.17, T:0.36
Consensus pattern (42 bp):
AAATAGGCTTGCATACATCCATTGACATTACATATGATATTG
Found at i:74233628 original size:31 final size:31
Alignment explanation
Indices: 74233593--74233671 Score: 104
Period size: 31 Copynumber: 2.5 Consensus size: 31
74233583 ACCGTTTACA
* *
74233593 GAAAAGGCTTCGGCCGAGTGAAATGATTTAT
1 GAAAAGGCTTCGGCCCAATGAAATGATTTAT
* * *
74233624 GAAAAGGGTTCAGCCCAATGATATGATTTAT
1 GAAAAGGCTTCGGCCCAATGAAATGATTTAT
*
74233655 GAAATGGCTTCGGCCCA
1 GAAAAGGCTTCGGCCCA
74233672 GTAACTGTTA
Statistics
Matches: 40, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 40 1.00
ACGTcount: A:0.32, C:0.16, G:0.27, T:0.25
Consensus pattern (31 bp):
GAAAAGGCTTCGGCCCAATGAAATGATTTAT
Found at i:74233693 original size:29 final size:29
Alignment explanation
Indices: 74233655--74233732 Score: 138
Period size: 29 Copynumber: 2.7 Consensus size: 29
74233645 TATGATTTAT
74233655 GAAATGGCTTCGGCCCAGTAACTGTTAAAC
1 GAAA-GGCTTCGGCCCAGTAACTGTTAAAC
*
74233685 GAAAGGCTTCAGCCCAGTAACTGTTAAAC
1 GAAAGGCTTCGGCCCAGTAACTGTTAAAC
74233714 GAAAGGCTTCGGCCCAGTA
1 GAAAGGCTTCGGCCCAGTA
74233733 TATGTCAAGA
Statistics
Matches: 46, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
29 42 0.91
30 4 0.09
ACGTcount: A:0.31, C:0.24, G:0.24, T:0.21
Consensus pattern (29 bp):
GAAAGGCTTCGGCCCAGTAACTGTTAAAC
Found at i:74237733 original size:24 final size:24
Alignment explanation
Indices: 74237706--74237751 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
74237696 TATAATATGG
* * *
74237706 AAATGACTATTTTGCCCCTAGGTA
1 AAATGACCATTATACCCCTAGGTA
74237730 AAATGACCATTATACCCCTAGG
1 AAATGACCATTATACCCCTAGG
74237752 GTTTAATTAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.33, C:0.24, G:0.15, T:0.28
Consensus pattern (24 bp):
AAATGACCATTATACCCCTAGGTA
Found at i:74237895 original size:25 final size:24
Alignment explanation
Indices: 74237862--74237919 Score: 73
Period size: 24 Copynumber: 2.4 Consensus size: 24
74237852 AGGAAGTGCA
74237862 AAAAGGGCTTTTGCCCCAGTTTATC
1 AAAAGGGCTTTTGCCCCAG-TTATC
* *
74237887 AAAAGGGC-TTTGCCCTAGTTATT
1 AAAAGGGCTTTTGCCCCAGTTATC
74237910 AAAAGAGGCT
1 AAAAG-GGCT
74237920 AGGCCTCGAG
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
23 9 0.31
24 12 0.41
25 8 0.28
ACGTcount: A:0.29, C:0.19, G:0.22, T:0.29
Consensus pattern (24 bp):
AAAAGGGCTTTTGCCCCAGTTATC
Found at i:74242132 original size:20 final size:23
Alignment explanation
Indices: 74242084--74242133 Score: 61
Period size: 23 Copynumber: 2.3 Consensus size: 23
74242074 ATCATGTTAG
* *
74242084 ATGTTAGAATTGGATTGGTTATA
1 ATGTTTGAATTGGACTGGTTATA
74242107 ATGTTTGAATTGG-CTGG-TAT-
1 ATGTTTGAATTGGACTGGTTATA
74242127 ATGTTTG
1 ATGTTTG
74242134 CAAGTATTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
20 7 0.28
21 3 0.12
22 3 0.12
23 12 0.48
ACGTcount: A:0.24, C:0.02, G:0.28, T:0.46
Consensus pattern (23 bp):
ATGTTTGAATTGGACTGGTTATA
Found at i:74244652 original size:42 final size:41
Alignment explanation
Indices: 74244578--74244730 Score: 135
Period size: 42 Copynumber: 3.5 Consensus size: 41
74244568 CCAAAGCTAC
* *
74244578 GTCCCAGACATGGTCTTACATGGGTCTGCATATCGATGCCAT
1 GTCCCAGACATGGTCTTATACGGGTCT-CATATCGATGCCAT
* * *
74244620 ATCCCAGATATGGTCTTATACGAAGTCTCATATAGGTGCTGATGCCAT
1 GTCCCAGACATGGTCTTATACG-GGTCTC--ATA--T-C-GATGCCAT
* * *
74244668 GTCCCAGACATGGTCTTATATGGGACCTCATATCAATGCCAT
1 GTCCCAGACATGGTCTTATACGGG-TCTCATATCGATGCCAT
* *
74244710 GTTCCAGATATGGTCTTATAC
1 GTCCCAGACATGGTCTTATAC
74244731 AAAATCACTT
Statistics
Matches: 89, Mismatches: 14, Indels: 16
0.75 0.12 0.13
Matches are distributed among these distances:
42 44 0.49
43 5 0.06
44 4 0.04
46 4 0.04
47 2 0.02
48 30 0.34
ACGTcount: A:0.25, C:0.24, G:0.21, T:0.31
Consensus pattern (41 bp):
GTCCCAGACATGGTCTTATACGGGTCTCATATCGATGCCAT
Found at i:74244884 original size:48 final size:48
Alignment explanation
Indices: 74244703--74244884 Score: 145
Period size: 48 Copynumber: 3.8 Consensus size: 48
74244693 CCTCATATCA
* * * * *
74244703 ATGCCATGTTCC-AGATATGGTCTTATACAAAATCACTTAAT-GATGTCG
1 ATGCCATG-TCCTAGACATGGTCTTACACAGAATCACAT-ATCAATGTCG
* * * * * * * * * *
74244751 AAGCCATATCCTTGATATGGTCTTATACGGGATCAGATATCAGTGCCG
1 ATGCCATGTCCTAGACATGGTCTTACACAGAATCACATATCAATGTCG
* * * *
74244799 ATGCCATGTCCCAGACACGGTCTTACACTAGCA-CACATATCAACGTCG
1 ATGCCATGTCCTAGACATGGTCTTACAC-AGAATCACATATCAATGTCG
74244847 ATGCCATGTCCTAGACATGGTCTTACACAGAATCACAT
1 ATGCCATGTCCTAGACATGGTCTTACACAGAATCACAT
74244885 TAACCATGGT
Statistics
Matches: 103, Mismatches: 27, Indels: 8
0.75 0.20 0.06
Matches are distributed among these distances:
47 8 0.08
48 93 0.90
49 2 0.02
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (48 bp):
ATGCCATGTCCTAGACATGGTCTTACACAGAATCACATATCAATGTCG
Found at i:74262984 original size:13 final size:13
Alignment explanation
Indices: 74262966--74262995 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
74262956 AAAAGAGAAT
74262966 ATTGAAGAAAACA
1 ATTGAAGAAAACA
*
74262979 ATTGAAGAACACA
1 ATTGAAGAAAACA
74262992 ATTG
1 ATTG
74262996 GAGCAAACTC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.53, C:0.10, G:0.17, T:0.20
Consensus pattern (13 bp):
ATTGAAGAAAACA
Found at i:74265491 original size:28 final size:27
Alignment explanation
Indices: 74265450--74265549 Score: 92
Period size: 28 Copynumber: 3.6 Consensus size: 27
74265440 AGGAAGCGTC
* *
74265450 CTGGTGGCTATGCCATAAATTATCTGAT
1 CTGGTGGCTCTGCCACAAA-TATCTGAT
* * *
74265478 CTGGTGGCTCTGCCACATATATTTGTT
1 CTGGTGGCTCTGCCACAAATATCTGAT
* * *
74265505 CTGGTGGCTCTGCCACGATTATCTATAT
1 CTGGTGGCTCTGCCACAAATATCT-GAT
* *
74265533 CTGGTGACTCTGTCACA
1 CTGGTGGCTCTGCCACA
74265550 TTATCTGTTC
Statistics
Matches: 57, Mismatches: 14, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
27 26 0.46
28 31 0.54
ACGTcount: A:0.19, C:0.23, G:0.22, T:0.36
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAAATATCTGAT
Found at i:74265514 original size:27 final size:26
Alignment explanation
Indices: 74265450--74265560 Score: 114
Period size: 27 Copynumber: 4.1 Consensus size: 26
74265440 AGGAAGCGTC
* * *
74265450 CTGGTGGCTATGCCATAAATTATCTGAT
1 CTGGTGGCTCTGCC--ACATTATCTGTT
*
74265478 CTGGTGGCTCTGCCACATATATTTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGTT
*
74265505 CTGGTGGCTCTGCCACGATTATCTATAT
1 CTGGTGGCTCTGCCAC-ATTATCTGT-T
* *
74265533 CTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGTT
74265559 CT
1 CT
74265561 TGCAGCCATG
Statistics
Matches: 71, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
26 6 0.08
27 35 0.49
28 30 0.42
ACGTcount: A:0.18, C:0.23, G:0.21, T:0.39
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGTT
Found at i:74265535 original size:55 final size:54
Alignment explanation
Indices: 74265450--74265560 Score: 134
Period size: 55 Copynumber: 2.0 Consensus size: 54
74265440 AGGAAGCGTC
* *
74265450 CTGGTGGCTATGCCATAAATTATCTGATCTGGTGGCTCTGCCACATATATTTGTT
1 CTGGTGGCTATGCCATAAATTATCTGATCTGGTGACTCTGCCACAT-TATCTGTT
* ** * *
74265505 CTGGTGGCTCTGCCA-CGATTATCTATATCTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTATGCCATAAATTATCT-GATCTGGTGACTCTGCCACATTATCTGTT
74265559 CT
1 CT
74265561 TGCAGCCATG
Statistics
Matches: 48, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
54 16 0.33
55 32 0.67
ACGTcount: A:0.18, C:0.23, G:0.21, T:0.39
Consensus pattern (54 bp):
CTGGTGGCTATGCCATAAATTATCTGATCTGGTGACTCTGCCACATTATCTGTT
Found at i:74270633 original size:38 final size:38
Alignment explanation
Indices: 74270591--74270683 Score: 114
Period size: 38 Copynumber: 2.4 Consensus size: 38
74270581 TAAAGACCCG
* *
74270591 CAGGCTTCGTGCTGGTAAAATATCCGGGTTAAATCCCA
1 CAGGCTTCGTGCTGGTAAAATATCAGGGATAAATCCCA
** *
74270629 CAGGCTTCGTGCTGGTATTATATCAGGGATAAATCCCG
1 CAGGCTTCGTGCTGGTAAAATATCAGGGATAAATCCCA
* * *
74270667 CAAGCCTAGTGCTGGTA
1 CAGGCTTCGTGCTGGTA
74270684 TTATATTCGG
Statistics
Matches: 47, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
38 47 1.00
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.27
Consensus pattern (38 bp):
CAGGCTTCGTGCTGGTAAAATATCAGGGATAAATCCCA
Found at i:74270754 original size:43 final size:43
Alignment explanation
Indices: 74270687--74270927 Score: 383
Period size: 43 Copynumber: 5.6 Consensus size: 43
74270677 GCTGGTATTA
74270687 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
**
74270730 TATTTAGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
* * * *
74270773 TATTCGGGCCTTCGTGCCTAGCAGGCTTCATTCTGATGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
*
74270816 TATTCGGGCCTTCGTGCCTAGTAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
* * *
74270859 TATTCGGGCTTTCGTGCCTAGCAGGCTTCGTGCTGGCGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
*
74270902 TATTCGGGCCTTCGTGCCTAGTAGGC
1 TATTCGGGCCTTCGTGCCTAGCAGGC
74270928 GTAAAACCGG
Statistics
Matches: 179, Mismatches: 19, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 179 1.00
ACGTcount: A:0.11, C:0.24, G:0.33, T:0.32
Consensus pattern (43 bp):
TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
Found at i:74275163 original size:38 final size:38
Alignment explanation
Indices: 74275116--74275212 Score: 113
Period size: 38 Copynumber: 2.6 Consensus size: 38
74275106 GGCTTAAAGA
* * *
74275116 CCCGGAGGCTTCGTGCCGGTAAAATATCCGGGTTAAAT
1 CCCGCAGGCTTCGTGCCGGTAAAATATCAGGGATAAAT
** **
74275154 CCCGCAGGCTTCGTGCTAGTATTATATCAGGGATAAAT
1 CCCGCAGGCTTCGTGCCGGTAAAATATCAGGGATAAAT
* *
74275192 CCCGCAGGCCTAGTGCCGGTA
1 CCCGCAGGCTTCGTGCCGGTA
74275213 TTATATTCGG
Statistics
Matches: 48, Mismatches: 11, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
38 48 1.00
ACGTcount: A:0.23, C:0.26, G:0.28, T:0.24
Consensus pattern (38 bp):
CCCGCAGGCTTCGTGCCGGTAAAATATCAGGGATAAAT
Found at i:74275469 original size:43 final size:43
Alignment explanation
Indices: 74275195--74275456 Score: 384
Period size: 43 Copynumber: 6.1 Consensus size: 43
74275185 GATAAATCCC
* * *
74275195 GCAGGCCTAGTGCCGGT-AT-TATATTCGGGCCTTCGTGCCTA
1 GCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
* * *
74275236 GCAGGCTTCGTGCCGGTGATATGTATTTGGGCATTCGTGCCTA
1 GCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
*
74275279 GCAGGCTTCGTGCCGGAGATGTGTATTCGGGCCTTCGTGCCTA
1 GCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
* *
74275322 GCAGGCTTCGTGCTGGTGATGTGTATTCGGGCCTTCGTCCCTA
1 GCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
* * *
74275365 GTAGGCTTCGTGCCGATGATGTGTATTTGGGCCTTCGTGCCTA
1 GCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
* *
74275408 GCAGGCTTCGTACTGGTGATGTGTATTCGGGCCTTCGTGCCTA
1 GCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
74275451 GCAGGC
1 GCAGGC
74275457 GTAATGCCGG
Statistics
Matches: 197, Mismatches: 22, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
41 15 0.08
42 2 0.01
43 180 0.91
ACGTcount: A:0.12, C:0.24, G:0.33, T:0.31
Consensus pattern (43 bp):
GCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
Found at i:74278275 original size:13 final size:13
Alignment explanation
Indices: 74278257--74278281 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
74278247 TAATGGTATA
74278257 TTGAATCCATGAC
1 TTGAATCCATGAC
74278270 TTGAATCCATGA
1 TTGAATCCATGA
74278282 AAATTTAGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (13 bp):
TTGAATCCATGAC
Found at i:74279766 original size:47 final size:47
Alignment explanation
Indices: 74279713--74280053 Score: 486
Period size: 47 Copynumber: 7.2 Consensus size: 47
74279703 AATTCTAAAT
74279713 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
74279760 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATA
*
74279809 TGTGATAAGG-CTAATGGCCGATGTGATGAATGTGAAAGTGTATATG
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* *
74279855 TGCGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATA
* * * *
74279904 TGTGATAAGGCTTAATGGCCAATGTGAAGAATGTGAAAGTGTATATG
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* *
74279951 CGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* * * * * * * *
74279998 TGTGACAGGGCCGAGTGGCCAATGTGATGGATGTGAAAGTGCATAAA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
74280045 TGTGATAAG
1 TGTGATAAG
74280054 TCCCGAAGGG
Statistics
Matches: 263, Mismatches: 26, Indels: 10
0.88 0.09 0.03
Matches are distributed among these distances:
46 14 0.05
47 162 0.62
48 30 0.11
49 57 0.22
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
Found at i:74279887 original size:95 final size:96
Alignment explanation
Indices: 74279713--74280053 Score: 508
Period size: 95 Copynumber: 3.6 Consensus size: 96
74279703 AATTCTAAAT
* *
74279713 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
1 TGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATGG
74279778 CCGATGTGATGAATGTGAAAGTGTATATATA
66 CCGATGTGATGAATGTGAAAGTGTATATATA
* * *
74279809 TGTGATAAGG-CTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGCGATAAGGCCTAATAG
1 TGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATGG
74279873 CCGATGTGATGAATGTGAAAGTGTATATATA
66 CCGATGTGATGAATGTGAAAGTGTATATATA
* * * *
74279904 TGTGATAAGGCTTAATGGCCAATGTGAAGAATGTGAAAGTGTATATGCGTGATAAGGCTTAATGG
1 TGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATGG
74279969 CCGATGTGATGAATGTGAAAGTG--TATATA
66 CCGATGTGATGAATGTGAAAGTGTATATATA
* * * * * * **
74279998 TGTGACAGGGCCGAGTGGCCAATGTGATGGATGTGAAAGTGCATAAATGTGATAAG
1 TGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATGTGTGATAAG
74280054 TCCCGAAGGG
Statistics
Matches: 223, Mismatches: 21, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
94 51 0.23
95 92 0.41
96 80 0.36
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (96 bp):
TGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATGG
CCGATGTGATGAATGTGAAAGTGTATATATA
Found at i:74280227 original size:37 final size:37
Alignment explanation
Indices: 74280171--74280249 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
74280161 TCGAGCTCTA
* * *
74280171 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
74280208 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
74280245 AAGAC
1 AAGAC
74280250 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:74282163 original size:43 final size:43
Alignment explanation
Indices: 74282102--74282232 Score: 244
Period size: 43 Copynumber: 3.0 Consensus size: 43
74282092 TTGGTTTTCA
74282102 GCAATAAGTGTTCACGGTTGCGAGATTGGCACTAAGTGTGCGG
1 GCAATAAGTGTTCACGGTTGCGAGATTGGCACTAAGTGTGCGG
74282145 GCAATAAGTGTTCACGGTTGCGAGATTGGCACTAAGTGTGCGG
1 GCAATAAGTGTTCACGGTTGCGAGATTGGCACTAAGTGTGCGG
* *
74282188 GCAATAAGTATTCACGGTTGTGAGATTGGCACTAAGTGTGCGG
1 GCAATAAGTGTTCACGGTTGCGAGATTGGCACTAAGTGTGCGG
74282231 GC
1 GC
74282233 TTGAAATGCA
Statistics
Matches: 86, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 86 1.00
ACGTcount: A:0.24, C:0.16, G:0.34, T:0.26
Consensus pattern (43 bp):
GCAATAAGTGTTCACGGTTGCGAGATTGGCACTAAGTGTGCGG
Found at i:74282247 original size:29 final size:29
Alignment explanation
Indices: 74282214--74282287 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
74282204 GTTGTGAGAT
* *
74282214 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
74282243 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
74282272 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
74282288 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:74282365 original size:40 final size:40
Alignment explanation
Indices: 74282310--74282707 Score: 654
Period size: 40 Copynumber: 9.9 Consensus size: 40
74282300 AAGCACTATG
74282310 TGTGCGAATTGATATATCCGGGTTAAGACCCGAAGGCATT
1 TGTGCGAATTGATATATCCGGGTTAAGACCCGAAGGCATT
74282350 TGTGCGAATTGATATATCCGGGTTAAGACCCGAAGGCATT
1 TGTGCGAATTGATATATCCGGGTTAAGACCCGAAGGCATT
74282390 TGTGCGAATTGATATATCCGGGTTAAGACCCGAAGGCATT
1 TGTGCGAATTGATATATCCGGGTTAAGACCCGAAGGCATT
74282430 TGTGCGAATTGATATATCCGGGTTAAGACCCGAAGGCATT
1 TGTGCGAATTGATATATCCGGGTTAAGACCCGAAGGCATT
* *
74282470 TGTGCGAATTGATATATCCGGGCTAAGACCTGAAGGCATT
1 TGTGCGAATTGATATATCCGGGTTAAGACCCGAAGGCATT
* *
74282510 TGTGCGAATTGATATATCTGGGATAAGACCCGAAGGCATT
1 TGTGCGAATTGATATATCCGGGTTAAGACCCGAAGGCATT
*
74282550 TGTGCGAATTGATATATCCGGGCTAAGACCCGAAGGCATT
1 TGTGCGAATTGATATATCCGGGTTAAGACCCGAAGGCATT
* *
74282590 TGTGCGAATTGATATATCCGGGCTAAGACCCGAAGGCAAT
1 TGTGCGAATTGATATATCCGGGTTAAGACCCGAAGGCATT
* *
74282630 TGTGC-AAGTTGATACATCCGGGCTAAGACCCGAAGGCATT
1 TGTGCGAA-TTGATATATCCGGGTTAAGACCCGAAGGCATT
* * * * *
74282670 CGTGCGAGTTGCTATACCCGAGTTAAGACCCGAAGGCA
1 TGTGCGAATTGATATATCCGGGTTAAGACCCGAAGGCA
74282708 ATTGAGCTTG
Statistics
Matches: 339, Mismatches: 17, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
39 2 0.01
40 336 0.99
41 1 0.00
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (40 bp):
TGTGCGAATTGATATATCCGGGTTAAGACCCGAAGGCATT
Found at i:74282776 original size:120 final size:117
Alignment explanation
Indices: 74282311--74282795 Score: 569
Period size: 120 Copynumber: 4.0 Consensus size: 117
74282301 AGCACTATGT
*
74282311 GTGCGAATTGATATATCCGGGTTAAGACCCGAAGGCATTTGTGCGAATTGATATATCCGGGTTAA
1 GTGCGAATTGATATATCCGGGTTAAGACCCGAAGGCATTTGTGCGAATTGATATATCCGGGCTAA
* ** *
74282376 GACCCGAAGGCATTTGTGCGAATTGATATATCCGGGTTAAGACCCGAAGGCATTT
66 GA-CCGAAGGCA-TTGTGC-AAGTGATATATCCGGACTAAGACCCGAAGGCATTC
74282431 GTGCGAATTGATATATCCGGGTTAAGACCCGAAGGCATTTGTGCGAATTGATATATCCGGGCTAA
1 GTGCGAATTGATATATCCGGGTTAAGACCCGAAGGCATTTGTGCGAATTGATATATCCGGGCTAA
* * *
74282496 GACCTGAAGGCATTTGTGCGAATTGATATATCTGGGA-TAAGACCCGAAGGCATTT
66 GACC-GAAGGCA-TTGTGC-AAGTGATATATC-CGGACTAAGACCCGAAGGCATTC
*
74282551 GTGCGAATTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGATATATCCGGGCTAA
1 GTGCGAATTGATATATCCGGGTTAAGACCCGAAGGCATTTGTGCGAATTGATATATCCGGGCTAA
* *
74282616 GACCCGAAGGCAATTGTGCAAGTTGATACATCCGGGCTAAGACCCGAAGGCATTC
66 GA-CCGAAGGC-ATTGTGCAAG-TGATATATCCGGACTAAGACCCGAAGGCATTC
* * * * * * *** * *
74282671 GTGCGAGTTGCTATACCCGAGTTAAGACCCGAAGGCAATTGAGCTTGTGGTTATATCCGGGCTAA
1 GTGCGAATTGATATATCCGGGTTAAGACCCGAAGGCATTTGTGCGAATTGATATATCCGGGCTAA
* ** ** *
74282736 -ATTCCGAAGAGCATTCGTGCTAGTGAGGTATCCGGACTAAGTTCCAAAGAGCATTC
66 GA--CCGAAG-GCATT-GTGCAAGTGATATATCCGGACTAAGACCCGAAG-GCATTC
74282792 GTGC
1 GTGC
74282796 TGGTGTTATA
Statistics
Matches: 325, Mismatches: 30, Indels: 19
0.87 0.08 0.05
Matches are distributed among these distances:
119 7 0.02
120 295 0.91
121 23 0.07
ACGTcount: A:0.27, C:0.19, G:0.28, T:0.26
Consensus pattern (117 bp):
GTGCGAATTGATATATCCGGGTTAAGACCCGAAGGCATTTGTGCGAATTGATATATCCGGGCTAA
GACCGAAGGCATTGTGCAAGTGATATATCCGGACTAAGACCCGAAGGCATTC
Found at i:74282826 original size:40 final size:40
Alignment explanation
Indices: 74282720--74282840 Score: 134
Period size: 40 Copynumber: 3.0 Consensus size: 40
74282710 TGAGCTTGTG
* *
74282720 GTTATATCCGGGCTAAATTCCGAAGAGCATTCGTGCTAGT
1 GTTATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTGGT
*** * *
74282760 GAGGTATCCGGACTAAGTTCCAAAGAGCATTCGTGCTGGT
1 GTTATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTGGT
* * * * *
74282800 GTTATATTCGGGCTAGGTCCCGAAGAGCAATCATGCTGGT
1 GTTATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTGGT
74282840 G
1 G
74282841 ACATGTATTC
Statistics
Matches: 64, Mismatches: 17, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
40 64 1.00
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.27
Consensus pattern (40 bp):
GTTATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTGGT
Found at i:74285299 original size:13 final size:13
Alignment explanation
Indices: 74285281--74285305 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
74285271 TAATGGTATA
74285281 TTGAATCCATGAC
1 TTGAATCCATGAC
74285294 TTGAATCCATGA
1 TTGAATCCATGA
74285306 AAATTTAGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (13 bp):
TTGAATCCATGAC
Found at i:74286790 original size:47 final size:47
Alignment explanation
Indices: 74286737--74287078 Score: 495
Period size: 47 Copynumber: 7.2 Consensus size: 47
74286727 AATTCTAAAT
74286737 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
74286784 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATA
* *
74286833 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATG
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* *
74286880 TGCGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATA
* * *
74286929 TGTGATAAGGCTTAATGGCCAATGTGATGAATGTGAAAGTGTATATG
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* *
74286976 CGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* * * * * * * *
74287023 TGTGACAGGGCCGAGTGGCCAATGTGATGGATGTGAAAGTGCATAAA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
74287070 TGTGATAAG
1 TGTGATAAG
74287079 TCCCGAAGGG
Statistics
Matches: 265, Mismatches: 26, Indels: 8
0.89 0.09 0.03
Matches are distributed among these distances:
47 177 0.67
49 88 0.33
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
Found at i:74286901 original size:96 final size:96
Alignment explanation
Indices: 74286737--74287078 Score: 517
Period size: 96 Copynumber: 3.6 Consensus size: 96
74286727 AATTCTAAAT
* *
74286737 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
1 TGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATGG
74286802 CCGATGTGATGAATGTGAAAGTGTATATATA
66 CCGATGTGATGAATGTGAAAGTGTATATATA
* * * *
74286833 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGCGATAAGGCCTAATAG
1 TGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATGG
74286898 CCGATGTGATGAATGTGAAAGTGTATATATA
66 CCGATGTGATGAATGTGAAAGTGTATATATA
* * *
74286929 TGTGATAAGGCTTAATGGCCAATGTGATGAATGTGAAAGTGTATATGCGTGATAAGGCTTAATGG
1 TGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATGG
74286994 CCGATGTGATGAATGTGAAAGTG--TATATA
66 CCGATGTGATGAATGTGAAAGTGTATATATA
* * * * * * **
74287023 TGTGACAGGGCCGAGTGGCCAATGTGATGGATGTGAAAGTGCATAAATGTGATAAG
1 TGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATGTGTGATAAG
74287079 TCCCGAAGGG
Statistics
Matches: 227, Mismatches: 19, Indels: 2
0.92 0.08 0.01
Matches are distributed among these distances:
94 52 0.23
96 175 0.77
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (96 bp):
TGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATGG
CCGATGTGATGAATGTGAAAGTGTATATATA
Found at i:74286981 original size:143 final size:143
Alignment explanation
Indices: 74286740--74287078 Score: 506
Period size: 143 Copynumber: 2.4 Consensus size: 143
74286730 TCTAAATTGT
74286740 GATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-TATATATGTGATAAGGCCTAATGGCC
1 GATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCC
* *
74286804 GATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCTTAATGGCCGATGTGATGAATGTGA
66 AATGTGATGAATGTGAAAGTG-ATATATACGTGATAAGGCTTAATGGCCGATGTGATGAATGTGA
*
74286869 AAGTGTATATGTGC
130 AAGTGTATATATGC
* *
74286883 GATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCTTAATGGC
1 GATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGC
*
74286948 CAATGTGATGAATGTGAAAGTG-TATATGCGTGATAAGGCTTAATGGCCGATGTGATGAATGTGA
65 CAATGTGATGAATGTGAAAGTGATATATACGTGATAAGGCTTAATGGCCGATGTGATGAATGTGA
*
74287012 AAGTGTATATATGT
130 AAGTGTATATATGC
* * * * * *
74287026 GACAGGGCCGAGTGGCCAATGTGATGGATGTGAAAGTGCATA-A-ATGTGATAAG
1 GATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGATAAG
74287079 TCCCGAAGGG
Statistics
Matches: 179, Mismatches: 15, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
141 10 0.06
142 1 0.01
143 123 0.69
145 45 0.25
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (143 bp):
GATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCC
AATGTGATGAATGTGAAAGTGATATATACGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAA
AGTGTATATATGC
Found at i:74287252 original size:37 final size:37
Alignment explanation
Indices: 74287196--74287274 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
74287186 TCGAGCTCTA
* * *
74287196 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
74287233 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
74287270 AAGAC
1 AAGAC
74287275 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:74292517 original size:27 final size:26
Alignment explanation
Indices: 74292487--74292567 Score: 99
Period size: 27 Copynumber: 3.0 Consensus size: 26
74292477 AGCGTCCTAA
*
74292487 TGGCTATGCCACATATATCTGTTCTGG
1 TGGCTCTGCCACAT-TATCTGTTCTGG
74292514 TGGCTCTGCCACGATTATCTGTATCTGG
1 TGGCTCTGCCAC-ATTATCTGT-TCTGG
* * *
74292542 TGACTCTGTCACATTATTTGTTCTGG
1 TGGCTCTGCCACATTATCTGTTCTGG
74292568 CAGCCATGCT
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
26 5 0.10
27 26 0.54
28 17 0.35
ACGTcount: A:0.16, C:0.22, G:0.22, T:0.40
Consensus pattern (26 bp):
TGGCTCTGCCACATTATCTGTTCTGG
Found at i:74298677 original size:12 final size:12
Alignment explanation
Indices: 74298660--74298689 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
74298650 AAGATCTCTA
74298660 CTTATTTGATGC
1 CTTATTTGATGC
74298672 CTTATTTGATGC
1 CTTATTTGATGC
74298684 CTTATT
1 CTTATT
74298690 GAAGCACAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.17, C:0.17, G:0.13, T:0.53
Consensus pattern (12 bp):
CTTATTTGATGC
Found at i:74308104 original size:24 final size:24
Alignment explanation
Indices: 74308068--74308136 Score: 59
Period size: 24 Copynumber: 2.9 Consensus size: 24
74308058 TTCACATTCT
*
74308068 TTCTCTCTCTCAAACTCTTTTTCA
1 TTCTCTCTCTCAAACTCATTTTCA
* * * *
74308092 TTCTCTTTTTCAATCTCATTTTCT
1 TTCTCTCTCTCAAACTCATTTTCA
* * *
74308116 TTTTCACTCTCAATCT-ATTTT
1 TTCTCTCTCTCAAACTCATTTT
74308137 TATTTTTCTT
Statistics
Matches: 36, Mismatches: 9, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
23 5 0.14
24 31 0.86
ACGTcount: A:0.16, C:0.28, G:0.00, T:0.57
Consensus pattern (24 bp):
TTCTCTCTCTCAAACTCATTTTCA
Found at i:74308110 original size:18 final size:18
Alignment explanation
Indices: 74308089--74308137 Score: 62
Period size: 18 Copynumber: 2.7 Consensus size: 18
74308079 AAACTCTTTT
74308089 TCATTCTCTTTTTCAATC
1 TCATTCTCTTTTTCAATC
* *
74308107 TCATTTTCTTTTTCACTC
1 TCATTCTCTTTTTCAATC
* *
74308125 TCAATCTATTTTT
1 TCATTCTCTTTTT
74308138 ATTTTTCTTT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.16, C:0.24, G:0.00, T:0.59
Consensus pattern (18 bp):
TCATTCTCTTTTTCAATC
Found at i:74308282 original size:12 final size:12
Alignment explanation
Indices: 74308249--74308282 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
74308239 TGTTCTTTTT
*
74308249 CTTTTTCAACGG
1 CTTTTTCAATGG
74308261 CTTTTTCAATGG
1 CTTTTTCAATGG
*
74308273 CTTTCTCAAT
1 CTTTTTCAAT
74308283 CTCTTTCAAG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.18, C:0.24, G:0.12, T:0.47
Consensus pattern (12 bp):
CTTTTTCAATGG
Found at i:74314528 original size:48 final size:48
Alignment explanation
Indices: 74314467--74314801 Score: 600
Period size: 48 Copynumber: 7.0 Consensus size: 48
74314457 ATATATGTGC
*
74314467 GTGGTAAAGCCGAATGGCTAATGTGAAATACATATGAGATATGTATAT
1 GTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATAT
74314515 GTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATAT
1 GTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATAT
*
74314563 GTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATAT
1 GTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATAT
*
74314611 GTGGTAAAGCCGAATGGCTAATGTGAAATAAATATGAGATATGTATAT
1 GTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATAT
74314659 GTGGTAAAGCCGAATGGCTAATGTGAAATATGA-ATGAGATATGTATAT
1 GTGGTAAAGCCGAATGGCTAATGTGAAATAT-ATATGAGATATGTATAT
* *
74314707 GTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATAT
1 GTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATAT
*
74314755 GTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 GTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATA
74314802 CTAGTGTGAA
Statistics
Matches: 277, Mismatches: 8, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
48 276 1.00
49 1 0.00
ACGTcount: A:0.37, C:0.07, G:0.27, T:0.30
Consensus pattern (48 bp):
GTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATAT
Found at i:74314813 original size:78 final size:78
Alignment explanation
Indices: 74314724--74314879 Score: 276
Period size: 78 Copynumber: 2.0 Consensus size: 78
74314714 AGCCGAATGG
* * *
74314724 CTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
1 CTAGTGTGAAATATATATAAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGAA
74314789 TGAGATATGTATA
66 TGAGATATGTATA
*
74314802 CTAGTGTGAAATATATATAAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGAA
1 CTAGTGTGAAATATATATAAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGAA
74314867 TGAGATATGTATA
66 TGAGATATGTATA
74314880 TGTGGCCGAA
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
78 74 1.00
ACGTcount: A:0.37, C:0.05, G:0.25, T:0.33
Consensus pattern (78 bp):
CTAGTGTGAAATATATATAAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGAA
TGAGATATGTATA
Found at i:74315065 original size:37 final size:37
Alignment explanation
Indices: 74315010--74315112 Score: 161
Period size: 37 Copynumber: 2.8 Consensus size: 37
74315000 GGAAATATAT
*
74315010 TCCGGGTAAGACCTGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
74315047 TCCGGGTAAGACCCGATGACTACCTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
74315084 TCCGGGTAAGACCCGATAACTACGCGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
74315113 GGACTATTCG
Statistics
Matches: 60, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 60 1.00
ACGTcount: A:0.23, C:0.21, G:0.31, T:0.24
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:74318465 original size:93 final size:93
Alignment explanation
Indices: 74318355--74318525 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
74318345 GCCCCTAAGT
* *
74318355 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCCCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCCCATCCATAAATGAACTCGGACTCAACTCAA
74318420 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* ** *
74318448 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCCCATCCATAAATGAACTCGGACTCAACTCAA
74318513 CGAGTTCGGATGC
66 CGAGTTCGGATGC
74318526 TCAACCATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCCCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:74318522 original size:46 final size:46
Alignment explanation
Indices: 74318350--74318522 Score: 199
Period size: 46 Copynumber: 3.7 Consensus size: 46
74318340 AACCCGCCCC
* * * **
74318350 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCCCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTACATCCA
* *
74318396 TAAATGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTACATCCA
* * *
74318444 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTACATCCA
74318489 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
74318523 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 13, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 60 0.56
47 29 0.27
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTACATCCA
Found at i:74326531 original size:56 final size:54
Alignment explanation
Indices: 74326412--74326552 Score: 147
Period size: 56 Copynumber: 2.5 Consensus size: 54
74326402 CATAACGTAG
* ** * *
74326412 CACGCCTCTCAACAGGGCTACATAAGAGCACCCGGACCTAGCATGCATCACATAAC
1 CACGCCTCTCAACAGGGCTACAT-A-AGCTCCCAAACCTAGCATGCACCACATAAA
* *
74326468 CACGCCTCTCAACAGGGCTACATAAGCTCCCAAACCTAGCGTGTACCACATAATTA
1 CACGCCTCTCAACAGGGCTACATAAGCTCCCAAACCTAGCATGCACCACATAA--A
* ** *
74326524 CATGCCTCTCAATGGGGCTACACAAGCTC
1 CACGCCTCTCAACAGGGCTACATAAGCTC
74326553 TAGGACCTAG
Statistics
Matches: 72, Mismatches: 11, Indels: 4
0.83 0.13 0.05
Matches are distributed among these distances:
54 23 0.32
55 1 0.01
56 48 0.67
ACGTcount: A:0.30, C:0.35, G:0.17, T:0.18
Consensus pattern (54 bp):
CACGCCTCTCAACAGGGCTACATAAGCTCCCAAACCTAGCATGCACCACATAAA
Found at i:74329954 original size:47 final size:48
Alignment explanation
Indices: 74329895--74330159 Score: 231
Period size: 47 Copynumber: 5.5 Consensus size: 48
74329885 TAATGTAAAA
*
74329895 CATGTTTGGGACAT-GCATCGGCCACATTATGAGAGCCAGTGTAAGAC
1 CATGTCTGGGACATGGCATCGGCCACATTATGAGAGCCAGTGTAAGAC
* * *
74329942 CATGTCTAGGACATGACATCGG---CATTGA-GACGAGTGCTAGTGTAAGA-
1 CATGTCTGGGACATGGCATCGGCCACATT-ATGA-GA--GCCAGTGTAAGAC
* * *
74329989 CATGTCTGGGACAT-GCATCGGCCTCGATGATGATAGCCAGTGTAAGA-
1 CATGTCTGGGACATGGCATCGGCCAC-ATTATGAGAGCCAGTGTAAGAC
* * * *
74330036 CATGTCTGAGACATGGCATCAGCACATATATATACGAGAGCTAGTGTAAGAC
1 CATGTCTGGGACATGGCATCGGC-CACAT-TAT--GAGAGCCAGTGTAAGAC
* * * * *
74330088 CATGTCTGGGACATGGCATCAGCCTCGATGACGATAGCCAGTGTAAGAC
1 CATGTCTGGGACATGGCATCGGCCAC-ATTATGAGAGCCAGTGTAAGAC
*
74330137 CATGTCTTGGACATGGCATCGGC
1 CATGTCTGGGACATGGCATCGGC
74330160 AACTTATTCC
Statistics
Matches: 176, Mismatches: 25, Indels: 32
0.76 0.11 0.14
Matches are distributed among these distances:
45 6 0.03
46 9 0.05
47 49 0.28
48 26 0.15
49 42 0.24
50 4 0.02
51 16 0.09
52 24 0.14
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.23
Consensus pattern (48 bp):
CATGTCTGGGACATGGCATCGGCCACATTATGAGAGCCAGTGTAAGAC
Found at i:74330042 original size:94 final size:96
Alignment explanation
Indices: 74329881--74330160 Score: 352
Period size: 94 Copynumber: 2.9 Consensus size: 96
74329871 GGTTATTTGT
* * * * * *
74329881 GTGCTAATGTAAAACATGTTTGGGACATGCATCGGCCAC-ATTATGAGAGCCAGTGTAAGACCAT
1 GTGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGATGATGATAGCCAGTGTAAGACCAT
*
74329945 GTCTAGGACATGACATCGGCAT-T-GAGACGA
66 GTCT-GGACATGGCATCGGCATATAGAGACGA
74329975 GTGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGATGATGATAGCCAGTGTAAGA-CAT
1 GTGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGATGATGATAGCCAGTGTAAGACCAT
* * *
74330039 GTCTGAGACATGGCATCAGCACATATATATACGA
66 GTCTG-GACATGGCATC-G-GCATATAGAGACGA
* * *
74330073 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCGATGACGATAGCCAGTGTAAGACC
1 GTGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGATGATGATAGCCAGTGTAAGACC
74330138 ATGTCTTGGACATGGCATCGGCA
64 ATGTC-TGGACATGGCATCGGCA
74330161 ACTTATTCCA
Statistics
Matches: 162, Mismatches: 14, Indels: 15
0.85 0.07 0.08
Matches are distributed among these distances:
93 1 0.01
94 52 0.32
95 20 0.12
96 3 0.02
97 1 0.01
98 18 0.11
99 16 0.10
100 32 0.20
101 17 0.10
102 2 0.01
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.23
Consensus pattern (96 bp):
GTGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGATGATGATAGCCAGTGTAAGACCAT
GTCTGGACATGGCATCGGCATATAGAGACGA
Found at i:74330149 original size:49 final size:49
Alignment explanation
Indices: 74329928--74330156 Score: 252
Period size: 47 Copynumber: 4.7 Consensus size: 49
74329918 ACATTATGAG
* * * * *
74329928 AGCCAGTGTAAGACCATGTCTAGGACATGACATCGGCATTGA-GACGAGT
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCGATGACGA-T
* * *
74329977 -GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGATGATGAT
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCGATGACGAT
* ** * *
74330023 AGCCAGTGTAAGA-CATGTCTGAGACATGGCATCAGCACATATATATACGAG
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGC-C-TCGAT-GACGAT
*
74330074 AGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCGATGACGAT
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCGATGACGAT
*
74330123 AGCCAGTGTAAGACCATGTCTTGGACATGGCATC
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATC
74330157 GGCAACTTAT
Statistics
Matches: 151, Mismatches: 22, Indels: 14
0.81 0.12 0.07
Matches are distributed among these distances:
46 11 0.07
47 41 0.27
48 18 0.12
49 37 0.25
50 6 0.04
51 16 0.11
52 22 0.15
ACGTcount: A:0.29, C:0.21, G:0.28, T:0.23
Consensus pattern (49 bp):
AGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCGATGACGAT
Found at i:74331268 original size:56 final size:56
Alignment explanation
Indices: 74331182--74331357 Score: 343
Period size: 56 Copynumber: 3.1 Consensus size: 56
74331172 ACAAGGGATG
74331182 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
74331238 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
74331294 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
74331350 ATGGGCAA
1 ATGGGCAA
74331358 TAAACTAATA
Statistics
Matches: 119, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
56 119 1.00
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:74332589 original size:39 final size:40
Alignment explanation
Indices: 74332486--74332670 Score: 198
Period size: 40 Copynumber: 4.7 Consensus size: 40
74332476 TCGAATGATG
* * * *
74332486 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGACCCGAAGGCATTTGTGC-GAGTTACTAAT
* * * *
74332525 ATCCGGACTAAGATCTGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTACTAAT
*
74332566 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTACTAAT
* *
74332605 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTACTAAT
* *
74332644 AACCGGGCTATGACCCGAAGGCATTTG
1 -TCCGGGCTAAGACCCGAAGGCATTTG
74332671 AACGAGTAGC
Statistics
Matches: 122, Mismatches: 19, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
39 35 0.29
40 78 0.64
41 9 0.07
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:74332624 original size:79 final size:81
Alignment explanation
Indices: 74332486--74332670 Score: 218
Period size: 79 Copynumber: 2.3 Consensus size: 81
74332476 TCGAATGATG
* * *
74332486 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCTGAAGGCATT
1 TCCGGGCTAAGACCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
74332550 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
74332565 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGACCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
74332627 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
74332645 ACCGGGCTATGACCCGAAGGCATTTG
1 TCCGGGCTAAGACCCGAAGGCATTTG
74332671 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.63
80 33 0.36
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGACCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:74332692 original size:79 final size:79
Alignment explanation
Indices: 74332541--74332693 Score: 204
Period size: 79 Copynumber: 1.9 Consensus size: 79
74332531 ACTAAGATCT
* **
74332541 GAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 GAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAAAT
74332606 CCGGGTTAAGTCCC
66 CCGGGTTAAGTCCC
* *
74332620 GAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGACCCGAAGGCATTTGAACGAG-TAGCTA
1 GAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-CTA
*
74332683 TATCC-GGTTAA
63 AATCCGGGTTAA
74332694 ATTTCGAAGG
Statistics
Matches: 65, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
78 2 0.03
79 38 0.58
80 25 0.38
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.25
Consensus pattern (79 bp):
GAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAAAT
CCGGGTTAAGTCCC
Found at i:74333671 original size:33 final size:33
Alignment explanation
Indices: 74333634--74333698 Score: 121
Period size: 33 Copynumber: 2.0 Consensus size: 33
74333624 AGATAATTAG
*
74333634 AAGTCATTCCATATATGAATAGATTCCTTTTTT
1 AAGTCATCCCATATATGAATAGATTCCTTTTTT
74333667 AAGTCATCCCATATATGAATAGATTCCTTTTT
1 AAGTCATCCCATATATGAATAGATTCCTTTTT
74333699 GAGTCTAGTT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.31, C:0.17, G:0.09, T:0.43
Consensus pattern (33 bp):
AAGTCATCCCATATATGAATAGATTCCTTTTTT
Found at i:74338777 original size:42 final size:41
Alignment explanation
Indices: 74338666--74338838 Score: 185
Period size: 40 Copynumber: 4.3 Consensus size: 41
74338656 GGACTAAGAT
* * *
74338666 CCGAAGGCATT-TGTGCGAGATAC-AAATTCCGGGTTAAGCC
1 CCGAAGGCATTGCGTGCGAGTTACTAAA-TCCGGGTTAAGTC
* * *
74338706 CCGAAGGCCTT-TGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTGCGTGCGAGTTACTAAATCCGGGTTAAGTC
* *
74338746 CCGAAGGCATTCGCGTGCGAGTTATTAAATCCGGGTTATGTC
1 CCGAAGGCATT-GCGTGCGAGTTACTAAATCCGGGTTAAGTC
* * *
74338788 CCGAAGGCATTGTCGT--GAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTG-CGTGCGAGTTACTAAATCCGGGTTAAGTC
74338828 CCGAAGGCATT
1 CCGAAGGCATT
74338839 TGAACGAGGA
Statistics
Matches: 119, Mismatches: 10, Indels: 8
0.87 0.07 0.06
Matches are distributed among these distances:
40 76 0.64
41 4 0.03
42 39 0.33
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (41 bp):
CCGAAGGCATTGCGTGCGAGTTACTAAATCCGGGTTAAGTC
Found at i:74346693 original size:80 final size:79
Alignment explanation
Indices: 74346609--74346780 Score: 220
Period size: 79 Copynumber: 2.2 Consensus size: 79
74346599 GGACTAAGAT
*
74346609 CCGAAGGCATTTGTGCGAGATA-CAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACT
1 CCGAAGGCATTTGTGCGAGATATCAAA-TCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACT
* *
74346673 AAATCCGGGTTAAGTC
64 AAAACCGGGCTAAGTC
* * * * * * *
74346689 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
*
74346754 AACCGGGCTATGTC
66 AACCGGGCTAAGTC
74346768 CCGAAGGCATTTG
1 CCGAAGGCATTTG
74346781 AACGAGGAGC
Statistics
Matches: 79, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
79 38 0.48
80 38 0.48
81 3 0.04
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
AACCGGGCTAAGTC
Found at i:74346760 original size:39 final size:39
Alignment explanation
Indices: 74346556--74346778 Score: 209
Period size: 40 Copynumber: 5.6 Consensus size: 39
74346546 TTGAATGCTG
* * * * *
74346556 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTA-AGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGA-T-ACTAAA
**
74346596 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATAC-AAA
1 TCCGGGTTAAG-TCCCGAAGGCA-TTGTGCGAGATACTAAA
* *
74346635 TTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
1 -TCCGGGTTAAGTCCCGAAGG-CATTGTGCGAGATACTAAA
* *
74346676 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGATACTAAA
* * *
74346716 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAA
* * *
74346755 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
74346779 TGAACGAGGA
Statistics
Matches: 157, Mismatches: 18, Indels: 17
0.82 0.09 0.09
Matches are distributed among these distances:
39 40 0.25
40 103 0.66
41 13 0.08
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAA
Found at i:74346798 original size:79 final size:80
Alignment explanation
Indices: 74346636--74346813 Score: 191
Period size: 79 Copynumber: 2.2 Consensus size: 80
74346626 AGATACAAAT
* * * *
74346636 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
** * *
74346701 GTGCGAGTTATTAAA
66 GAACGAGTGACTAAA
* * * * *
74346716 TCCGGGTTATGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
*
74346780 GAACGAG-GAGCTATA
66 GAACGAGTGA-CTAAA
*
74346795 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
74346814 TACGTGATTT
Statistics
Matches: 81, Mismatches: 16, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
78 15 0.19
79 48 0.59
80 18 0.22
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
GAACGAGTGACTAAA
Found at i:74350175 original size:53 final size:56
Alignment explanation
Indices: 74350070--74350177 Score: 132
Period size: 53 Copynumber: 2.0 Consensus size: 56
74350060 CATAACATAG
* *
74350070 CACGCCTCTCAACAGGGCTACTTAAGAGCACCCGGACCTAGCATGCATCACATAAC
1 CACGCCTCTCAACAGGGCTACATAAGAGCACCCGGACCTAGCATGCACCACATAAC
* * * * *
74350126 CACGCCTTTCAACA-GGCTACAT-A-AGCTCTCGGACCTAGCGTGTACCACATAA
1 CACGCCTCTCAACAGGGCTACATAAGAGCACCCGGACCTAGCATGCACCACATAA
74350178 TTACGTGCCT
Statistics
Matches: 45, Mismatches: 7, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
53 24 0.53
54 1 0.02
55 7 0.16
56 13 0.29
ACGTcount: A:0.30, C:0.34, G:0.18, T:0.19
Consensus pattern (56 bp):
CACGCCTCTCAACAGGGCTACATAAGAGCACCCGGACCTAGCATGCACCACATAAC
Found at i:74354136 original size:23 final size:23
Alignment explanation
Indices: 74354110--74354216 Score: 117
Period size: 23 Copynumber: 4.7 Consensus size: 23
74354100 CAAAGTACCA
* *
74354110 CACTGTAATATAGCCGAAGCTAT
1 CACTGTAATGTAGCCGAAGCTAC
* *
74354133 CACTGTAACGTAGCCAAAGCTAC
1 CACTGTAATGTAGCCGAAGCTAC
*
74354156 CACTGTATTGTAGCCGAAGCTAC
1 CACTGTAATGTAGCCGAAGCTAC
* *
74354179 CACT-AAGATGTAGCCAAAGCTAC
1 CACTGTA-ATGTAGCCGAAGCTAC
* *
74354202 CACTATATTGTAGCC
1 CACTGTAATGTAGCC
74354217 TATAGATTCC
Statistics
Matches: 70, Mismatches: 12, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
22 1 0.01
23 68 0.97
24 1 0.01
ACGTcount: A:0.33, C:0.26, G:0.18, T:0.23
Consensus pattern (23 bp):
CACTGTAATGTAGCCGAAGCTAC
Found at i:74354170 original size:46 final size:46
Alignment explanation
Indices: 74354110--74354216 Score: 144
Period size: 46 Copynumber: 2.3 Consensus size: 46
74354100 CAAAGTACCA
* * * *
74354110 CACTGTAATATAGCCGAAGCTATCACTGTA-ACGTAGCCAAAGCTAC
1 CACTGTATTGTAGCCGAAGCTACCACT-AAGACGTAGCCAAAGCTAC
*
74354156 CACTGTATTGTAGCCGAAGCTACCACTAAGATGTAGCCAAAGCTAC
1 CACTGTATTGTAGCCGAAGCTACCACTAAGACGTAGCCAAAGCTAC
*
74354202 CACTATATTGTAGCC
1 CACTGTATTGTAGCC
74354217 TATAGATTCC
Statistics
Matches: 54, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
45 1 0.02
46 53 0.98
ACGTcount: A:0.33, C:0.26, G:0.18, T:0.23
Consensus pattern (46 bp):
CACTGTATTGTAGCCGAAGCTACCACTAAGACGTAGCCAAAGCTAC
Found at i:74362834 original size:50 final size:49
Alignment explanation
Indices: 74362715--74363007 Score: 243
Period size: 50 Copynumber: 5.8 Consensus size: 49
74362705 TTATGAGAAC
* * *
74362715 ACATGTGTAGTACTATGTGCAGGCTACTATGTGTTTAAGACAG-TT-TTAGGT
1 ACATGTGTAGTACTAAGTGCAGGCTACTACGTG--T-A-CCAGATTGTTAGGT
* * * *
74362766 CACGTGTGTAGTGCTAAGTGTAGGCTACTACATGTACCAGATTGTTAGGT
1 -ACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
* * * * * *
74362816 AGCATGTGTAGTAGTAAGTGCAGGCTACT-CTGCGTACCTGATAGCTTTGAT
1 A-CATGTGTAGTACTAAGTGCAGGCTACTAC-GTGTACCAGATTG-TTAGGT
* * ** *
74362867 CACGTGTGTAGTACTAAGTACAGGCTACTACGTGTATTAGATGGTTAGGT
1 -ACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
*
74362917 -CAAGTGTGTAGTACTAAGTGCAGGATACTACGTGTACCAGATTGTTAGGT
1 AC-A-TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
* * * *
74362967 CGCATGTGTAGTACTAAGTGCAAGCTACTATGCGTACCAGA
1 -ACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA
74363008 GAGCTTCGGT
Statistics
Matches: 193, Mismatches: 37, Indels: 24
0.76 0.15 0.09
Matches are distributed among these distances:
48 4 0.02
49 5 0.03
50 117 0.61
51 37 0.19
52 30 0.16
ACGTcount: A:0.26, C:0.16, G:0.27, T:0.31
Consensus pattern (49 bp):
ACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
Found at i:74362954 original size:101 final size:99
Alignment explanation
Indices: 74362760--74362996 Score: 253
Period size: 101 Copynumber: 2.4 Consensus size: 99
74362750 TAAGACAGTT
* * * *
74362760 TTAGGTCACGTGTGTAGTGCTAAGTGTAGGCTACTACATGTACCAGATTGTTAGGTAGCATGTGT
1 TTAGATCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATGGTTAGGTAG-ATGTGT
* * *
74362825 AGTAGTAAGTGCAGGCTACTCTGCGTACCTGATAG
65 AGTACTAAGTGCAGGATACTCTGCGTACCAGATAG
* * * **
74362860 CTTTGATCACGTGTGTAGTACTAAGTACAGGCTACTACGTGTATTAGATGGTTAGGTCA-AGTGT
1 -TTAGATCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATGGTTAGGT-AGA-TGT
* *
74362924 GTAGTACTAAGTGCAGGATACTAC-GTGTACCAGATTG
63 GTAGTACTAAGTGCAGGATACT-CTGCGTACCAGATAG
* * * *
74362961 TTAGGTCGCATGTGTAGTACTAAGTGCAAGCTACTA
1 TTAGATCACGTGTGTAGTACTAAGTGCAGGCTACTA
74362997 TGCGTACCAG
Statistics
Matches: 113, Mismatches: 20, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
100 31 0.27
101 80 0.71
102 2 0.02
ACGTcount: A:0.26, C:0.16, G:0.27, T:0.31
Consensus pattern (99 bp):
TTAGATCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATGGTTAGGTAGATGTGTA
GTACTAAGTGCAGGATACTCTGCGTACCAGATAG
Found at i:74362994 original size:151 final size:153
Alignment explanation
Indices: 74362718--74363013 Score: 418
Period size: 151 Copynumber: 1.9 Consensus size: 153
74362708 TGAGAACACA
* * * * * *
74362718 TGTGTAGTACTATGTGCAGGCTACTATGTGTTTAAGACAGTTTTAGGTCACGTGTGTAGTGCTAA
1 TGTGTAGTACTAAGTACAGGCTACTACGTGTTTAAGACAGTGTTAGGTCAAGTGTGTAGTACTAA
* * * * *
74362783 GTGTAGGCTACTACATGTACCAGATTGTTAGGTAGCATGTGTAGTAGTAAGTGCAGGCTACTCTG
66 GTGCAGGATACTACATGTACCAGATTGTTAGGTAGCATGTGTAGTACTAAGTGCAAGCTACTATG
* *
74362848 CGTACCTGATAGCTTTGATCACG
131 CGTACCAGAGAGCTTTGATCACG
*
74362871 TGTGTAGTACTAAGTACAGGCTACTACGTGTATT-AGA-TG-GTTAGGTCAAGTGTGTAGTACTA
1 TGTGTAGTACTAAGTACAGGCTACTACGTGT-TTAAGACAGTGTTAGGTCAAGTGTGTAGTACTA
* *
74362933 AGTGCAGGATACTACGTGTACCAGATTGTTAGGTCGCATGTGTAGTACTAAGTGCAAGCTACTAT
65 AGTGCAGGATACTACATGTACCAGATTGTTAGGTAGCATGTGTAGTACTAAGTGCAAGCTACTAT
74362998 GCGTACCAGAGAGCTT
130 GCGTACCAGAGAGCTT
74363014 CGGTTACAAG
Statistics
Matches: 126, Mismatches: 16, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
151 92 0.73
152 1 0.01
153 31 0.25
154 2 0.02
ACGTcount: A:0.25, C:0.16, G:0.27, T:0.32
Consensus pattern (153 bp):
TGTGTAGTACTAAGTACAGGCTACTACGTGTTTAAGACAGTGTTAGGTCAAGTGTGTAGTACTAA
GTGCAGGATACTACATGTACCAGATTGTTAGGTAGCATGTGTAGTACTAAGTGCAAGCTACTATG
CGTACCAGAGAGCTTTGATCACG
Found at i:74375375 original size:34 final size:33
Alignment explanation
Indices: 74375325--74375388 Score: 85
Period size: 34 Copynumber: 1.9 Consensus size: 33
74375315 TTGTGTGCAT
* *
74375325 ACTGTACTGAACTGGGCTA-AGGCCCAGACTACC
1 ACTGTACTGAAATGGGC-ACAAGCCCAGACTACC
74375358 ACTGATACTGAAATGGGCACAAGCCCAGACT
1 ACTG-TACTGAAATGGGCACAAGCCCAGACT
74375389 GCTTCTACTA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
33 5 0.19
34 22 0.81
ACGTcount: A:0.31, C:0.28, G:0.23, T:0.17
Consensus pattern (33 bp):
ACTGTACTGAAATGGGCACAAGCCCAGACTACC
Found at i:74382713 original size:83 final size:83
Alignment explanation
Indices: 74382615--74382779 Score: 276
Period size: 83 Copynumber: 2.0 Consensus size: 83
74382605 TCTGTACATG
*
74382615 CACATAACAAAACAAATAGTAGCCATATTACATGATTTAAAAAACAATCACATGCGCATCATTGG
1 CACATAACAAAACAAATAGTAGACATATTACATGATTTAAAAAACAATCACATGCGCATCATTGG
*
74382680 TACAAAATAGTATGGCTA
66 TACAAAATAATATGGCTA
* * *
74382698 CACATAATAAAACAAATAGTAGACATATTACATGATTTAAAAAGCAATCACATGTGCATCATTGG
1 CACATAACAAAACAAATAGTAGACATATTACATGATTTAAAAAACAATCACATGCGCATCATTGG
*
74382763 TACAATATAATATGGCT
66 TACAAAATAATATGGCT
74382780 GTACATGCTA
Statistics
Matches: 76, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
83 76 1.00
ACGTcount: A:0.45, C:0.16, G:0.12, T:0.26
Consensus pattern (83 bp):
CACATAACAAAACAAATAGTAGACATATTACATGATTTAAAAAACAATCACATGCGCATCATTGG
TACAAAATAATATGGCTA
Found at i:74383383 original size:14 final size:14
Alignment explanation
Indices: 74383364--74383392 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
74383354 AACATAGCTT
74383364 AGTAAGTCCTAAAC
1 AGTAAGTCCTAAAC
74383378 AGTAAGTCCTAAAC
1 AGTAAGTCCTAAAC
74383392 A
1 A
74383393 AATAAACAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.45, C:0.21, G:0.14, T:0.21
Consensus pattern (14 bp):
AGTAAGTCCTAAAC
Found at i:74384039 original size:43 final size:43
Alignment explanation
Indices: 74383955--74384040 Score: 102
Period size: 43 Copynumber: 2.0 Consensus size: 43
74383945 AAATCGTACA
* **
74383955 ATGCCAATGTCCCAGACGTGGTCTTACATGTAGTCACATATCG
1 ATGCCAATGTCCCAGACGTGGTCTTACACGTACACACATATCG
* * *
74383998 ATGCCACTGTCCTAGACAG-GGTCTTACACGTACACATATATCG
1 ATGCCAATGTCCCAGAC-GTGGTCTTACACGTACACACATATCG
74384041 GAATCACATA
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
43 35 0.97
44 1 0.03
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.27
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACGTGGTCTTACACGTACACACATATCG
Found at i:74386597 original size:27 final size:28
Alignment explanation
Indices: 74386559--74386613 Score: 78
Period size: 27 Copynumber: 2.0 Consensus size: 28
74386549 TAGTAACAGC
*
74386559 ACAGTGTGGGCCTTAA-CCCAATA-AGTA
1 ACAGTGTCGGCC-TAAGCCCAATACAGTA
74386586 ACAGTGTCGGCCTAAGCCCAATACAGTA
1 ACAGTGTCGGCCTAAGCCCAATACAGTA
74386614 TCAAAATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
26 3 0.12
27 18 0.72
28 4 0.16
ACGTcount: A:0.33, C:0.25, G:0.22, T:0.20
Consensus pattern (28 bp):
ACAGTGTCGGCCTAAGCCCAATACAGTA
Found at i:74386916 original size:32 final size:32
Alignment explanation
Indices: 74386846--74386917 Score: 90
Period size: 32 Copynumber: 2.2 Consensus size: 32
74386836 TACACGGCTT
* **
74386846 ACAGCCATCAGTAGCGGTAATTTGATCGGTAC
1 ACAGCCATCAGTAGCGGTAATATGATCGCCAC
* **
74386878 AAAGCCATCAGTAGTTGTAATATGATCGCCAC
1 ACAGCCATCAGTAGCGGTAATATGATCGCCAC
74386910 ACAGCCAT
1 ACAGCCAT
74386918 GGGCAAATAT
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.32, C:0.24, G:0.21, T:0.24
Consensus pattern (32 bp):
ACAGCCATCAGTAGCGGTAATATGATCGCCAC
Found at i:74387418 original size:27 final size:25
Alignment explanation
Indices: 74387387--74387474 Score: 95
Period size: 27 Copynumber: 3.3 Consensus size: 25
74387377 CAAAACAGTC
74387387 ATTTTAACCTACAGGGGTATTTCGATA
1 ATTTT-ACCTACAGGGGTATTTC-ATA
*
74387414 ATTTTACTCTACAAGGGTATTTCAATA
1 ATTTTAC-CTACAGGGGTATTTC-ATA
**
74387441 ATTTTACAAATCAGGGGTATTTCAGTA
1 ATTTTACCTA-CAGGGGTATTTCA-TA
74387468 ATTTTAC
1 ATTTTAC
74387475 AAGCTAGGGG
Statistics
Matches: 53, Mismatches: 5, Indels: 6
0.83 0.08 0.09
Matches are distributed among these distances:
26 4 0.08
27 49 0.92
ACGTcount: A:0.32, C:0.14, G:0.15, T:0.40
Consensus pattern (25 bp):
ATTTTACCTACAGGGGTATTTCATA
Found at i:74387475 original size:27 final size:26
Alignment explanation
Indices: 74387398--74387572 Score: 136
Period size: 27 Copynumber: 6.5 Consensus size: 26
74387388 TTTTAACCTA
* **
74387398 CAGGGGTATTTCGATAATTTTACTCT
1 CAGGGGTATTTCGGTAATTTTACAAT
* **
74387424 ACAAGGGTATTTCAATAATTTTACAAAT
1 -CAGGGGTATTTCGGTAATTTTAC-AAT
* *
74387452 CAGGGGTATTTCAGTAATTTTACAAG
1 CAGGGGTATTTCGGTAATTTTACAAT
*
74387478 CTAGGGGTATTTCGGTAAATTTACAAT
1 C-AGGGGTATTTCGGTAATTTTACAAT
* * *
74387505 CCAAGGGTATTTTGGT-ATTTTACAAA
1 -CAGGGGTATTTCGGTAATTTTACAAT
** * *
74387531 CTAGAAGTATTTTGGTAATTTTACAAAC
1 C-AGGGGTATTTCGGTAATTTTAC-AAT
*
74387559 CGGGGGTATTTCGG
1 CAGGGGTATTTCGG
74387573 CCCAATAGAT
Statistics
Matches: 120, Mismatches: 22, Indels: 12
0.78 0.14 0.08
Matches are distributed among these distances:
25 1 0.01
26 22 0.18
27 92 0.77
28 5 0.04
ACGTcount: A:0.30, C:0.12, G:0.21, T:0.37
Consensus pattern (26 bp):
CAGGGGTATTTCGGTAATTTTACAAT
Found at i:74387566 original size:53 final size:54
Alignment explanation
Indices: 74387430--74387570 Score: 158
Period size: 53 Copynumber: 2.6 Consensus size: 54
74387420 CTCTACAAGG
** * * **
74387430 GTATTTCAATAATTTTACAAATCAGGGGTATTTCAGTAATTTTACAAGCTAGGG
1 GTATTTCGGTAATTTTACAAACCAGGGGTATTTCAGTAATTTTACAAACTAGAA
* * * **
74387484 GTATTTCGGTAAATTTACAATCCAAGGGTATTTTGGT-ATTTTACAAACTAGAA
1 GTATTTCGGTAATTTTACAAACCAGGGGTATTTCAGTAATTTTACAAACTAGAA
* *
74387537 GTATTTTGGTAATTTTACAAACCGGGGGTATTTC
1 GTATTTCGGTAATTTTACAAACCAGGGGTATTTC
74387571 GGCCCAATAG
Statistics
Matches: 70, Mismatches: 17, Indels: 1
0.80 0.19 0.01
Matches are distributed among these distances:
53 41 0.59
54 29 0.41
ACGTcount: A:0.31, C:0.11, G:0.19, T:0.38
Consensus pattern (54 bp):
GTATTTCGGTAATTTTACAAACCAGGGGTATTTCAGTAATTTTACAAACTAGAA
Found at i:74399005 original size:45 final size:46
Alignment explanation
Indices: 74398847--74399021 Score: 216
Period size: 45 Copynumber: 3.8 Consensus size: 46
74398837 ATGGTTGGCA
*
74398847 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * *
74398893 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---G
*
74398938 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
*
74398986 -CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
74399022 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 8, Indels: 19
0.81 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 39 0.35
46 29 0.26
47 28 0.25
48 3 0.03
50 4 0.04
51 3 0.03
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:74401942 original size:15 final size:15
Alignment explanation
Indices: 74401903--74401981 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
74401893 GTATCTTGGG
*
74401903 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
74401918 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
74401933 TTTCTTTATTC-GGG
1 TTTCTTTATTCTGGA
*
74401947 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
74401962 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
74401976 TTTCTT
1 TTTCTT
74401982 GTTATCTTTG
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
13 2 0.04
14 17 0.32
15 32 0.60
16 2 0.04
ACGTcount: A:0.10, C:0.18, G:0.14, T:0.58
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:74401966 original size:29 final size:29
Alignment explanation
Indices: 74401894--74401980 Score: 95
Period size: 29 Copynumber: 3.0 Consensus size: 29
74401884 CATAGTATCG
* * * *
74401894 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTC-GGATTTCTC
*
74401924 TAT-TCTGGATTTCTTTATTCGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCGGATTTCTC
*
74401953 TATCTTGGATTTCTTTATTCGGTTTTCT
1 TATCTTGGATTTCTTTATTCGGATTTCT
74401981 TGTTATCTTT
Statistics
Matches: 49, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 32 0.65
30 17 0.35
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.56
Consensus pattern (29 bp):
TATCTTGGATTTCTTTATTCGGATTTCTC
Found at i:74404403 original size:46 final size:46
Alignment explanation
Indices: 74404353--74404528 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
74404343 GATGTTGGCA
74404353 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
74404399 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
74404444 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
74404492 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
74404529 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.04
45 3 0.03
46 65 0.58
47 28 0.25
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:74404459 original size:93 final size:93
Alignment explanation
Indices: 74404349--74404520 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
74404339 CTAGGATGTT
* *
74404349 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
74404414 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* *
74404442 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
74404507 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
74404521 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:74407216 original size:28 final size:28
Alignment explanation
Indices: 74407176--74407231 Score: 78
Period size: 28 Copynumber: 2.0 Consensus size: 28
74407166 TAGTAACAGC
* *
74407176 ACAGTGTGGGCCTTAA-CCCAATATAGTA
1 ACAGTGTCGGCC-TAAGCCCAATACAGTA
74407204 ACAGTGTCGGCCTAAGCCCAATACAGTA
1 ACAGTGTCGGCCTAAGCCCAATACAGTA
74407232 TCAGAATCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.12
28 22 0.88
ACGTcount: A:0.32, C:0.25, G:0.21, T:0.21
Consensus pattern (28 bp):
ACAGTGTCGGCCTAAGCCCAATACAGTA
Found at i:74407516 original size:32 final size:32
Alignment explanation
Indices: 74407466--74407528 Score: 81
Period size: 32 Copynumber: 2.0 Consensus size: 32
74407456 CACGGCTTAC
* *
74407466 AGCCATCAGTAGCGGTAATTTGATCGACACAA
1 AGCCATCAGTAACGGTAATATGATCGACACAA
** *
74407498 AGCCATCAGTAATTGTAATATGATCGGCACA
1 AGCCATCAGTAACGGTAATATGATCGACACA
74407529 CAACCATGGG
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
32 26 1.00
ACGTcount: A:0.35, C:0.21, G:0.21, T:0.24
Consensus pattern (32 bp):
AGCCATCAGTAACGGTAATATGATCGACACAA
Found at i:74412773 original size:47 final size:49
Alignment explanation
Indices: 74412722--74412948 Score: 136
Period size: 47 Copynumber: 4.8 Consensus size: 49
74412712 GAATTGACGG
*
74412722 TTAAGGATACCATGTAAGACCATGTTAAGACATGGCATCGACA-T-TGA
1 TTAAGGATACCATGTAAGACCATGTTAAGACATGGCATCGACACTAAGA
** * * * *
74412769 TTAAGGACT-CCATGTAAGACCACATCAAGATATGGCATTGGCACTAAGA
1 TTAAGGA-TACCATGTAAGACCATGTTAAGACATGGCATCGACACTAAGA
* ** ** * *
74412818 -CAAGGATACCATGTAAGACCATGTTTGGAACATATCATTTG---GTAAGA
1 TTAAGGATACCATGTAAGACCATGTTAAG-ACATGGCA-TCGACACTAAGA
** * *
74412865 -TAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTG---GTAAGA
1 TTAAGGATACCATGTAAGACCATGTTAAG-ACATGGCA-TCGACACTAAGA
* * *
74412912 -TAAGGATATCATGTAAGACCATGTCAAGGCATGGCAT
1 TTAAGGATACCATGTAAGACCATGTTAAGACATGGCAT
74412949 TGATAAGTTC
Statistics
Matches: 149, Mismatches: 25, Indels: 14
0.79 0.13 0.07
Matches are distributed among these distances:
45 1 0.01
46 7 0.05
47 109 0.73
48 22 0.15
49 7 0.05
50 3 0.02
ACGTcount: A:0.36, C:0.16, G:0.22, T:0.26
Consensus pattern (49 bp):
TTAAGGATACCATGTAAGACCATGTTAAGACATGGCATCGACACTAAGA
Found at i:74413042 original size:55 final size:54
Alignment explanation
Indices: 74412913--74413109 Score: 229
Period size: 54 Copynumber: 3.6 Consensus size: 54
74412903 TTGGTAAGAT
* * * * *
74412913 AAGGATATCATGTAAGACCATGTCAAGGCATGGCATTGATAAGTTCTATATGGC
1 AAGGATCTCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTCTATAAGGA
** * *
74412967 AAGGAAATCATGTAAGACCATGTCAAGACATGGAATTAATGAGTTACTATAAGGA
1 AAGGATCTCATGTAAGACCATGTCAAGACATGGCATTGATGAGTT-CTATAAGGA
* * *
74413022 AATGG-TCTCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGA
1 AA-GGATCTCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTCTATAAGGA
*
74413075 AAGGATAC-CACGTAAGACCATGTCAAGACATGGCA
1 AAGGAT-CTCATGTAAGACCATGTCAAGACATGGCA
74413110 ATGGTAAGTT
Statistics
Matches: 122, Mismatches: 17, Indels: 9
0.82 0.11 0.06
Matches are distributed among these distances:
52 2 0.02
53 34 0.28
54 42 0.34
55 42 0.34
56 2 0.02
ACGTcount: A:0.37, C:0.16, G:0.24, T:0.23
Consensus pattern (54 bp):
AAGGATCTCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTCTATAAGGA
Found at i:74418498 original size:47 final size:47
Alignment explanation
Indices: 74418377--74418498 Score: 208
Period size: 47 Copynumber: 2.6 Consensus size: 47
74418367 ACATTGGTAC
*
74418377 TAAGATAAGGATACCATGTAAGACCATCTTTGGAACATGGCATTTGG
1 TAAGATAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
*
74418424 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
1 TAAGATAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
* *
74418471 TAAGATATGGATATCATGTAAGACCATG
1 TAAGATAAGGATACCATGTAAGACCATG
74418499 CCAAGGCATG
Statistics
Matches: 70, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 70 1.00
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.27
Consensus pattern (47 bp):
TAAGATAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
Found at i:74418603 original size:55 final size:53
Alignment explanation
Indices: 74418485--74418673 Score: 206
Period size: 55 Copynumber: 3.5 Consensus size: 53
74418475 ATATGGATAT
* * *
74418485 CATGTAAGACCATGCCAAGGCATGGAATTGATAAGTTCTATAAGGCAAGGAAAT-
1 CATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGCAAGG--ATC
* *
74418539 CATGTAAGACCATGTCAAGACATGGCATTAATGAGTTACTATAAGGCAAAGG-TC
1 CATGTAAGACCATGCCAAGACATGGCATTGATGAGTT-CTATAAGGC-AAGGATC
* *
74418593 GCATGTAAGACCATGCCAA-ATCATGGCATTGGTGATTTC-ATAAGGCAAGGATAC
1 -CATGTAAGACCATGCCAAGA-CATGGCATTGATGAGTTCTATAAGGCAAGGAT-C
* *
74418647 CACGTAAGACCATGTCAAGACATGGCA
1 CATGTAAGACCATGCCAAGACATGGCA
74418674 ATGGTAAGTT
Statistics
Matches: 116, Mismatches: 11, Indels: 17
0.81 0.08 0.12
Matches are distributed among these distances:
52 4 0.03
53 32 0.28
54 36 0.31
55 40 0.34
56 4 0.03
ACGTcount: A:0.37, C:0.18, G:0.23, T:0.22
Consensus pattern (53 bp):
CATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGCAAGGATC
Found at i:74425137 original size:79 final size:79
Alignment explanation
Indices: 74425006--74425163 Score: 316
Period size: 79 Copynumber: 2.0 Consensus size: 79
74424996 AATTTTTTTA
74425006 ATTTGGTGAATATTTTGAGTTATTTCATTGTTGAAAGCTTGTGATTTTTGTTGTTTGATGATGAA
1 ATTTGGTGAATATTTTGAGTTATTTCATTGTTGAAAGCTTGTGATTTTTGTTGTTTGATGATGAA
74425071 ATATGAAAGATATG
66 ATATGAAAGATATG
74425085 ATTTGGTGAATATTTTGAGTTATTTCATTGTTGAAAGCTTGTGATTTTTGTTGTTTGATGATGAA
1 ATTTGGTGAATATTTTGAGTTATTTCATTGTTGAAAGCTTGTGATTTTTGTTGTTTGATGATGAA
74425150 ATATGAAAGATATG
66 ATATGAAAGATATG
74425164 TTTTAGATTA
Statistics
Matches: 79, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
79 79 1.00
ACGTcount: A:0.28, C:0.03, G:0.23, T:0.47
Consensus pattern (79 bp):
ATTTGGTGAATATTTTGAGTTATTTCATTGTTGAAAGCTTGTGATTTTTGTTGTTTGATGATGAA
ATATGAAAGATATG
Found at i:74433855 original size:34 final size:34
Alignment explanation
Indices: 74433783--74433858 Score: 100
Period size: 34 Copynumber: 2.2 Consensus size: 34
74433773 GTGCATATTG
**
74433783 TACTGAAATGGGCTAAGGCCCAAACTGCCACTGT
1 TACTGAAATGGGCTAAGGCCCAAACTGCCACTAC
**
74433817 TACTGAAATGGGC-ACAGGCCCAAACTGCTTCTAC
1 TACTGAAATGGGCTA-AGGCCCAAACTGCCACTAC
74433851 TACTGAAA
1 TACTGAAA
74433859 GAGGGGTTAA
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
33 1 0.03
34 36 0.97
ACGTcount: A:0.32, C:0.26, G:0.21, T:0.21
Consensus pattern (34 bp):
TACTGAAATGGGCTAAGGCCCAAACTGCCACTAC
Found at i:74434230 original size:30 final size:30
Alignment explanation
Indices: 74434196--74434258 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
74434186 AATTACCAAG
74434196 CAAATGCCTCTAAAATAATAAAAAAATTAA
1 CAAATGCCTCTAAAATAATAAAAAAATTAA
* * *
74434226 CAAATGCCTTTAAAATAATAAGAAATTTAA
1 CAAATGCCTCTAAAATAATAAAAAAATTAA
74434256 CAA
1 CAA
74434259 TAAAATTATT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.57, C:0.13, G:0.05, T:0.25
Consensus pattern (30 bp):
CAAATGCCTCTAAAATAATAAAAAAATTAA
Found at i:74450301 original size:27 final size:27
Alignment explanation
Indices: 74450270--74450447 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
74450260 TAAATTGTAC
74450270 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
74450297 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
74450323 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
74450351 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
74450379 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
74450406 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
74450433 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
74450448 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:74450384 original size:82 final size:81
Alignment explanation
Indices: 74450271--74450426 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
74450261 AAATTGTACA
* *
74450271 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
74450335 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
74450352 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
74450417 TGCGAGTTGA
65 TGCGAATTGA
74450427 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:74450438 original size:82 final size:81
Alignment explanation
Indices: 74450267--74450447 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
74450257 GATTAAATTG
* *
74450267 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
74450332 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
74450348 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
74450412 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
74450430 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
74450448 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:74454910 original size:185 final size:186
Alignment explanation
Indices: 74454597--74454938 Score: 623
Period size: 185 Copynumber: 1.8 Consensus size: 186
74454587 TCGGGGTGTT
74454597 ACACGGGTAGCTCACAAGCTCGTGTCTTTTAAGGGTGTCGACCAAGGCTTTCACGAACTCACACG
1 ACACGGGTAGCTCACAAGCTCGTGTCTTTTAAGGGTGTCGACCAAGGCTTTCACGAACTCACACG
* *
74454662 GCCTGGCCATTGACCTATATGGCCGTGTGCAATTTAACGGATTGAACACAGCCTGGCAATCACGT
66 GCCTGGCCATTGACCCACATGGCCGTGTGCAATTTAACGGATTGAACACAGCCTGGCAATCACGT
74454727 CACACGGCCGTGTCACACGAGCGTGTCTGAGAAGATGACCTGGCTTAAGCCTTGAC
131 CACACGGCCGTGTCACACGAGCGTGTCTGAGAAGATGACCTGGCTTAAGCCTTGAC
*
74454783 ACACGGGTAGCTCACAAGCTCGTGTCTTTTAAGGGTGTCGACCAAGGCTTTCATG-ACTCACACG
1 ACACGGGTAGCTCACAAGCTCGTGTCTTTTAAGGGTGTCGACCAAGGCTTTCACGAACTCACACG
* *
74454847 GCCTGGCCATTGGCCCACATGGTCGTGTGCAATTTAACGGATTGAACACAGCCTGGCAATCACGT
66 GCCTGGCCATTGACCCACATGGCCGTGTGCAATTTAACGGATTGAACACAGCCTGGCAATCACGT
*
74454912 CATACGGCCGTGTCACACGAGCGTGTC
131 CACACGGCCGTGTCACACGAGCGTGTC
74454939 CCTGCTGAGC
Statistics
Matches: 150, Mismatches: 6, Indels: 1
0.96 0.04 0.01
Matches are distributed among these distances:
185 96 0.64
186 54 0.36
ACGTcount: A:0.23, C:0.28, G:0.26, T:0.23
Consensus pattern (186 bp):
ACACGGGTAGCTCACAAGCTCGTGTCTTTTAAGGGTGTCGACCAAGGCTTTCACGAACTCACACG
GCCTGGCCATTGACCCACATGGCCGTGTGCAATTTAACGGATTGAACACAGCCTGGCAATCACGT
CACACGGCCGTGTCACACGAGCGTGTCTGAGAAGATGACCTGGCTTAAGCCTTGAC
Found at i:74465310 original size:26 final size:26
Alignment explanation
Indices: 74465274--74465326 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
74465264 CAAACTACAC
74465274 TTATGTGTTAAGTTGATTAAATTCTA
1 TTATGTGTTAAGTTGATTAAATTCTA
74465300 TTATGTGTTAAGTTGATTAAATTCTA
1 TTATGTGTTAAGTTGATTAAATTCTA
74465326 T
1 T
74465327 GTTTATAAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.04, G:0.15, T:0.51
Consensus pattern (26 bp):
TTATGTGTTAAGTTGATTAAATTCTA
Found at i:74466024 original size:12 final size:13
Alignment explanation
Indices: 74466007--74466038 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
74465997 GCAAATGTTA
74466007 AGTTTTG-TGCAT
1 AGTTTTGATGCAT
74466019 AGTTTTGATGCAT
1 AGTTTTGATGCAT
74466032 -GTTTTGA
1 AGTTTTGA
74466039 AATGTTCTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 14 0.74
13 5 0.26
ACGTcount: A:0.19, C:0.06, G:0.25, T:0.50
Consensus pattern (13 bp):
AGTTTTGATGCAT
Found at i:74483207 original size:40 final size:39
Alignment explanation
Indices: 74483123--74483344 Score: 240
Period size: 40 Copynumber: 5.6 Consensus size: 39
74483113 TTGAATGATG
* *
74483123 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAC-CAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGA-T-ACTAAT
* *
74483162 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
74483203 TCCGGGCTAAGCCCGAAGGCATTTGTGC--GATACTAAT
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
* *
74483240 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
* *
74483279 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
* *
74483318 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAG-CCCGAAGGCATTTG
74483345 AACGAGTAGC
Statistics
Matches: 161, Mismatches: 14, Indels: 14
0.85 0.07 0.07
Matches are distributed among these distances:
37 37 0.23
39 34 0.21
40 78 0.48
41 11 0.07
42 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:74483376 original size:79 final size:77
Alignment explanation
Indices: 74483176--74483377 Score: 214
Period size: 76 Copynumber: 2.6 Consensus size: 77
74483166 GGACTAAGAT
** * * * *
74483176 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCT-AAGCCCGAAGGCATTTGTGCGATACTAAT
1 CCGAAGGCATTTGAACGAGTTACTAAATCCGGGTTAAATCCCGAAGGCATTTGTGCGATACTAAT
*
74483240 TCCGGGCTAAGC
66 ACCGGGCTAAGC
** *
74483252 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-
1 CCGAAGGCATTTGAACGAGTTACTAAATCCGGGTTAAATCCCGAAGGCATTTGTGCGA--TACTA
*
74483316 ATAACCGGGCTATGTC
64 AT-ACCGGGCTAAG-C
* *
74483332 CCGAAGGCATTTGAACGAG-TAGCTATATCC-GGTTAAATTCCGAAGG
1 CCGAAGGCATTTGAACGAGTTA-CTAAATCCGGGTTAAATCCCGAAGG
74483378 TACGTGATTT
Statistics
Matches: 108, Mismatches: 12, Indels: 9
0.84 0.09 0.07
Matches are distributed among these distances:
76 32 0.30
77 20 0.19
78 2 0.02
79 29 0.27
80 25 0.23
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (77 bp):
CCGAAGGCATTTGAACGAGTTACTAAATCCGGGTTAAATCCCGAAGGCATTTGTGCGATACTAAT
ACCGGGCTAAGC
Found at i:74491244 original size:39 final size:40
Alignment explanation
Indices: 74491143--74491366 Score: 273
Period size: 40 Copynumber: 5.7 Consensus size: 40
74491133 TTGAATGATG
* *
74491143 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
74491182 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
74491223 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
74491262 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
74491301 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
74491340 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
74491367 AACGAGTAGC
Statistics
Matches: 166, Mismatches: 11, Indels: 14
0.87 0.06 0.07
Matches are distributed among these distances:
39 75 0.45
40 78 0.47
41 12 0.07
42 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:74491330 original size:79 final size:80
Alignment explanation
Indices: 74491143--74491366 Score: 287
Period size: 79 Copynumber: 2.8 Consensus size: 80
74491133 TTGAATGATG
* * * *
74491143 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGACCATATCCGGACTAAGATCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTATATCCGGGCTAAGACCCGAAGGCAT
*
74491206 TTGTGCGAGATACTAAT
64 TTGTGCGAGATACTAAA
74491223 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTA-ATTCCGGGCTAAG-CCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTATA-TCCGGGCTAAGACCCGAAGGCATT
*
74491285 TGTGCGAGTTACTAAA
65 TGTGCGAGATACTAAA
* * * * *
74491301 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTATATCCGGGCTAAGACCCGAAGGCATTT
74491366 G
66 G
74491367 AACGAGTAGC
Statistics
Matches: 128, Mismatches: 10, Indels: 12
0.85 0.07 0.08
Matches are distributed among these distances:
78 36 0.28
79 56 0.44
80 35 0.27
81 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTATATCCGGGCTAAGACCCGAAGGCATTT
GTGCGAGATACTAAA
Found at i:74491397 original size:79 final size:79
Alignment explanation
Indices: 74491196--74491399 Score: 227
Period size: 79 Copynumber: 2.6 Consensus size: 79
74491186 GGACTAAGAT
** * * * *
74491196 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCT-AAGCCCGAAGGCATTTGTGCGAGATACTA
1 CCGAAGGCATTTGAACGAGTTACTAAATCCGGGTTAAATCCCGAAGGCATTTGTGCGAGATACTA
*
74491260 ATTCCGGGCTAAGC
66 ATACCGGGCTAAGC
** * *
74491274 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-
1 CCGAAGGCATTTGAACGAGTTACTAAATCCGGGTTAAATCCCGAAGGCATTTGTGCGAGATACTA
*
74491338 ATAACCGGGCTATGTC
66 AT-ACCGGGCTAAG-C
* *
74491354 CCGAAGGCATTTGAACGAG-TAGCTATATCC-GGTTAAATTCCGAAGG
1 CCGAAGGCATTTGAACGAGTTA-CTAAATCCGGGTTAAATCCCGAAGG
74491400 TACGTGATTT
Statistics
Matches: 109, Mismatches: 13, Indels: 7
0.84 0.10 0.05
Matches are distributed among these distances:
78 34 0.31
79 50 0.46
80 25 0.23
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGAACGAGTTACTAAATCCGGGTTAAATCCCGAAGGCATTTGTGCGAGATACTA
ATACCGGGCTAAGC
Done.