Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 227 of 349
Found at i:74494324 original size:6 final size:6
Alignment explanation
Indices: 74494294--74494405 Score: 70
Period size: 6 Copynumber: 18.3 Consensus size: 6
74494284 AAGAAACATT
* * *
74494294 ATCAGA A-CTAGA ATCAAA ATGAGA ATCAGA ATCAG- GTGACAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA
* * * *
74494343 ATCAGA ATTAGTG A-CAGA ATCAGA CTCAGT ATCAGGTA A-CAGA ATCAGA
1 ATCAGA ATCAG-A ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA
*
74494392 ATTAGA ATCAGA AT
1 ATCAGA ATCAGA AT
74494406 GTGAATGAAA
Statistics
Matches: 80, Mismatches: 16, Indels: 20
0.69 0.14 0.17
Matches are distributed among these distances:
5 5 0.06
6 65 0.81
7 8 0.10
8 2 0.03
ACGTcount: A:0.46, C:0.14, G:0.20, T:0.20
Consensus pattern (6 bp):
ATCAGA
Found at i:74494362 original size:43 final size:43
Alignment explanation
Indices: 74494315--74494396 Score: 107
Period size: 43 Copynumber: 1.9 Consensus size: 43
74494305 AATCAAAATG
74494315 AGAATCAGAATCAGGTGA-CA-G-AATCAGAATCAGAATTAGTGAC
1 AGAATCAGAATCA-GT-ATCAGGTAA-CAGAATCAGAATTAGTGAC
*
74494358 AGAATCAGACTCAGTATCAGGTAACAGAATCAGAATTAG
1 AGAATCAGAATCAGTATCAGGTAACAGAATCAGAATTAG
74494397 AATCAGAATG
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
41 1 0.03
42 4 0.11
43 28 0.80
44 2 0.06
ACGTcount: A:0.44, C:0.15, G:0.22, T:0.20
Consensus pattern (43 bp):
AGAATCAGAATCAGTATCAGGTAACAGAATCAGAATTAGTGAC
Found at i:74495050 original size:27 final size:27
Alignment explanation
Indices: 74495020--74495109 Score: 103
Period size: 27 Copynumber: 3.3 Consensus size: 27
74495010 GGGGCAAAAT
* *
74495020 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTTTACCCTACAAGGGTATTTC
* *
74495047 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
*
74495074 GGT-ATTTCTACCCTA-ATGGGCTATTTC
1 GGTAATTT-TACCCTACAAGGG-TATTTC
74495101 GGTAATTTT
1 GGTAATTTT
74495110 GTAAATCGAG
Statistics
Matches: 54, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
26 7 0.13
27 43 0.80
28 4 0.07
ACGTcount: A:0.22, C:0.21, G:0.20, T:0.37
Consensus pattern (27 bp):
GGTAATTTTACCCTACAAGGGTATTTC
Found at i:74500136 original size:40 final size:40
Alignment explanation
Indices: 74499954--74500176 Score: 236
Period size: 40 Copynumber: 5.6 Consensus size: 40
74499944 TCCTCGTTCA
* * * * *
74499954 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
74499993 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
74500033 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
74500073 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* ** * * * *
74500113 AAGGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
74500153 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
74500177 CAGCATTCAA
Statistics
Matches: 160, Mismatches: 20, Indels: 7
0.86 0.11 0.04
Matches are distributed among these distances:
39 37 0.23
40 115 0.72
41 8 0.05
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:74500185 original size:41 final size:41
Alignment explanation
Indices: 74500108--74500185 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
74500098 TTAGTATCTC
* * *
74500108 GCACAAAGGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
74500149 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAAGGCCTTC-GGATCTTAGCCCGGACA-CATTCA
74500186 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (41 bp):
GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:74510137 original size:30 final size:30
Alignment explanation
Indices: 74510103--74510163 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
74510093 TCCTTAACTC
74510103 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
74510133 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
74510163 A
1 A
74510164 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:74514566 original size:30 final size:30
Alignment explanation
Indices: 74514532--74514592 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
74514522 TCCTTAACTC
74514532 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
74514562 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
74514592 A
1 A
74514593 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:74516867 original size:27 final size:28
Alignment explanation
Indices: 74516824--74516929 Score: 137
Period size: 27 Copynumber: 3.9 Consensus size: 28
74516814 GAGGAAGCGT
*
74516824 TCTGGTGGCTCTACCACAAATATCTG-A
1 TCTGGTGGCTCTGCCACAAATATCTGTA
* *
74516851 TATGGTGGCTCTGCCACAAATATCTGTT
1 TCTGGTGGCTCTGCCACAAATATCTGTA
*
74516879 TCTGGTGGCTCTGCCA-TAATATCTGTA
1 TCTGGTGGCTCTGCCACAAATATCTGTA
* *
74516906 TCTGGTGACTCTGTCAC-AATATCT
1 TCTGGTGGCTCTGCCACAAATATCT
74516930 ATTCTGGCAG
Statistics
Matches: 69, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
27 54 0.78
28 15 0.22
ACGTcount: A:0.22, C:0.24, G:0.20, T:0.35
Consensus pattern (28 bp):
TCTGGTGGCTCTGCCACAAATATCTGTA
Found at i:74516886 original size:55 final size:54
Alignment explanation
Indices: 74516823--74516929 Score: 144
Period size: 55 Copynumber: 2.0 Consensus size: 54
74516813 GGAGGAAGCG
*
74516823 TTCTGGTGGCTCTACCACAAATATCTG-ATATGGTGGCTCTGCCACAAATATCTGT
1 TTCTGGTGGCTCTACCA-AAATATCTGTATATGGTGACTCTGCCAC-AATATCTGT
* * * *
74516878 TTCTGGTGGCTCTGCCATAATATCTGTATCTGGTGACTCTGTCACAATATCT
1 TTCTGGTGGCTCTACCAAAATATCTGTATATGGTGACTCTGCCACAATATCT
74516930 ATTCTGGCAG
Statistics
Matches: 46, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
54 15 0.33
55 31 0.67
ACGTcount: A:0.21, C:0.23, G:0.20, T:0.36
Consensus pattern (54 bp):
TTCTGGTGGCTCTACCAAAATATCTGTATATGGTGACTCTGCCACAATATCTGT
Found at i:74518613 original size:21 final size:22
Alignment explanation
Indices: 74518589--74518630 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
74518579 AGCACAGGAA
* *
74518589 TGTCCC-TGGGTCACACGGGCG
1 TGTCCCTTGGGCCACAAGGGCG
74518610 TGTCCCTTGGGCCACAAGGGC
1 TGTCCCTTGGGCCACAAGGGC
74518631 ATGTGAGCCC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 6 0.33
22 12 0.67
ACGTcount: A:0.12, C:0.33, G:0.36, T:0.19
Consensus pattern (22 bp):
TGTCCCTTGGGCCACAAGGGCG
Found at i:74522078 original size:20 final size:20
Alignment explanation
Indices: 74522055--74522093 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
74522045 ATATTTAAGA
74522055 ATGAA-TGTATATATATTATT
1 ATGAACTGTATATAT-TTATT
*
74522075 ATGAACTTTATATATTTAT
1 ATGAACTGTATATATTTAT
74522094 ATTTAAATGT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.38, C:0.03, G:0.08, T:0.51
Consensus pattern (20 bp):
ATGAACTGTATATATTTATT
Found at i:74531147 original size:40 final size:40
Alignment explanation
Indices: 74531095--74531333 Score: 343
Period size: 40 Copynumber: 5.9 Consensus size: 40
74531085 ATTACCACAA
* * * ** *
74531095 GCACAATTGCCTTCGGGTCTTAACCAGGGCATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* * *
74531135 GCACGAATGCCTTCGGGTCTTAGCCTGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
74531175 GCACAATTGCCTTCGGGTCTTAGCCCGGATATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGG--ATATATCAACTC
*
74531217 GCACAAATGCCTGCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
74531257 GCACAAATGCCTGCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
74531297 GCACAAATGCCTTCGGGACTTAGCCCGGATATATCAA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAA
74531334 ATGCTCATGC
Statistics
Matches: 181, Mismatches: 16, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
40 144 0.80
42 37 0.20
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
Found at i:74531312 original size:122 final size:122
Alignment explanation
Indices: 74531095--74531330 Score: 355
Period size: 122 Copynumber: 1.9 Consensus size: 122
74531085 ATTACCACAA
* * * * *
74531095 GCACAATTGCCTTCGGGTCTTAACCAGGGCATAGCAACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTGCGGGTCTTAACCAGGACATAGCAACTCGCACAAATGCCTGCGGGTCTTAGCC
* * * *
74531160 TGGATATATCAACTTGCACAATTGCCTTCGGGTCTTAGCCCGGATATATATCAACTC
66 CGGATATATCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATATATCAACTC
* * * *
74531217 GCACAAATGCCTGCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCTGCGGGTCTTAGCC
1 GCACAAATGCCTGCGGGTCTTAACCAGGACATAGCAACTCGCACAAATGCCTGCGGGTCTTAGCC
74531282 CGGATATATCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAT
66 CGGATATATCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAT
74531331 CAAATGCTCA
Statistics
Matches: 101, Mismatches: 13, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
122 101 1.00
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (122 bp):
GCACAAATGCCTGCGGGTCTTAACCAGGACATAGCAACTCGCACAAATGCCTGCGGGTCTTAGCC
CGGATATATCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATATATCAACTC
Found at i:74536610 original size:15 final size:15
Alignment explanation
Indices: 74536561--74536626 Score: 60
Period size: 15 Copynumber: 4.4 Consensus size: 15
74536551 CATGAAAACA
* * *
74536561 AAGACAAAGAAGTCC
1 AAGATAAAGAAATAC
* *
74536576 AAGAGAAAGAAATCC
1 AAGATAAAGAAATAC
* *
74536591 TAGATAAAGAAATAG
1 AAGATAAAGAAATAC
*
74536606 AAGATATAGAAATAC
1 AAGATAAAGAAATAC
74536621 AAGATA
1 AAGATA
74536627 CAATATCATA
Statistics
Matches: 42, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
15 42 1.00
ACGTcount: A:0.59, C:0.09, G:0.18, T:0.14
Consensus pattern (15 bp):
AAGATAAAGAAATAC
Found at i:74547901 original size:27 final size:28
Alignment explanation
Indices: 74547871--74547931 Score: 70
Period size: 27 Copynumber: 2.2 Consensus size: 28
74547861 AATAGTAAAT
* *
74547871 TTACTAAAATACCCCTAAGTATG-AAAA
1 TTACCAAAATACCCATAAGTATGCAAAA
**
74547898 TTACCATTATACCCATAAGTATGCAAAA
1 TTACCAAAATACCCATAAGTATGCAAAA
*
74547926 CTACCA
1 TTACCA
74547932 TTATACACCC
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
27 19 0.68
28 9 0.32
ACGTcount: A:0.44, C:0.23, G:0.07, T:0.26
Consensus pattern (28 bp):
TTACCAAAATACCCATAAGTATGCAAAA
Found at i:74547934 original size:28 final size:27
Alignment explanation
Indices: 74547879--74547937 Score: 91
Period size: 28 Copynumber: 2.1 Consensus size: 27
74547869 ATTTACTAAA
* *
74547879 ATACCCCTAAGTATGAAAATTACCATT
1 ATACCCATAAGTATGAAAACTACCATT
74547906 ATACCCATAAGTATGCAAAACTACCATT
1 ATACCCATAAGTATG-AAAACTACCATT
74547934 ATAC
1 ATAC
74547938 ACCCAGGGTA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
27 14 0.48
28 15 0.52
ACGTcount: A:0.42, C:0.24, G:0.07, T:0.27
Consensus pattern (27 bp):
ATACCCATAAGTATGAAAACTACCATT
Found at i:74548116 original size:27 final size:26
Alignment explanation
Indices: 74548045--74548159 Score: 149
Period size: 27 Copynumber: 4.3 Consensus size: 26
74548035 TGGAGGAAGC
74548045 GTTCTGGTGGCTATGCCACAATTATCT
1 GTTCTGGTGGCTATGCCACAA-TATCT
*
74548072 ATTTCTGGTGGCTATGCCACAAATATCT
1 -GTTCTGGTGGCTATGCCAC-AATATCT
*
74548100 GTTCTGGTGGCTCTGCCACAATATCT
1 GTTCTGGTGGCTATGCCACAATATCT
* * *
74548126 GTATCTGGTGACTCTGTCACAATATCT
1 GT-TCTGGTGGCTATGCCACAATATCT
74548153 GTTCTGG
1 GTTCTGG
74548160 CAGCCATGCT
Statistics
Matches: 80, Mismatches: 5, Indels: 6
0.88 0.05 0.07
Matches are distributed among these distances:
26 14 0.17
27 41 0.51
28 23 0.29
29 2 0.03
ACGTcount: A:0.19, C:0.23, G:0.22, T:0.37
Consensus pattern (26 bp):
GTTCTGGTGGCTATGCCACAATATCT
Found at i:74552191 original size:28 final size:27
Alignment explanation
Indices: 74552129--74552192 Score: 76
Period size: 28 Copynumber: 2.3 Consensus size: 27
74552119 ATTTACTAAA
*
74552129 ATACCCCTAAGTATGACAATTACTATT
1 ATACCCCTAAGTATGACAATTACCATT
* *
74552156 ATAGCCCTAAGTATGTA-ATTTTACCATT
1 ATACCCCTAAGTATG-ACA-ATTACCATT
74552184 ATACCCCTA
1 ATACCCCTA
74552193 GGGTTAATTT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
27 15 0.48
28 16 0.52
ACGTcount: A:0.34, C:0.23, G:0.08, T:0.34
Consensus pattern (27 bp):
ATACCCCTAAGTATGACAATTACCATT
Found at i:74552367 original size:27 final size:26
Alignment explanation
Indices: 74552296--74552410 Score: 149
Period size: 27 Copynumber: 4.3 Consensus size: 26
74552286 TGGTGGAAGC
74552296 GTTCTGGTGGCTATGCCACAATTATCT
1 GTTCTGGTGGCTATGCCACAA-TATCT
74552323 GTTTCTGGTGGCTATGCCACAAATATCT
1 G-TTCTGGTGGCTATGCCAC-AATATCT
*
74552351 GTTCTGGTGGCTCTGCCACAATATCT
1 GTTCTGGTGGCTATGCCACAATATCT
* * *
74552377 GTATCTGGTGACTCTGTCACAATATCT
1 GT-TCTGGTGGCTATGCCACAATATCT
*
74552404 GCTCTGG
1 GTTCTGG
74552411 CAGCCATGCT
Statistics
Matches: 81, Mismatches: 4, Indels: 7
0.88 0.04 0.08
Matches are distributed among these distances:
26 14 0.17
27 41 0.51
28 24 0.30
29 2 0.02
ACGTcount: A:0.18, C:0.23, G:0.23, T:0.36
Consensus pattern (26 bp):
GTTCTGGTGGCTATGCCACAATATCT
Found at i:74565643 original size:40 final size:40
Alignment explanation
Indices: 74565543--74565758 Score: 273
Period size: 40 Copynumber: 5.5 Consensus size: 40
74565533 TGGATGATAA
* * *
74565543 CCGGGCTAAGTCCTGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTA-TAT
*
74565583 CCGGGC-AAGTCCCGAAGGCATTGGTGCTAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATAT
*
74565622 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAAG-TACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-TAGTTACTATAT
* *
74565662 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATAT
*
74565702 CCGGGCTAAGTCCCGAAGGCATTTGAGC-AG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTA-CTATAT
**
74565741 CC-GGCTAAACCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
74565759 TACTTGGTTG
Statistics
Matches: 159, Mismatches: 12, Indels: 12
0.87 0.07 0.07
Matches are distributed among these distances:
38 17 0.11
39 44 0.28
40 96 0.60
41 2 0.01
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATAT
Found at i:74575860 original size:47 final size:46
Alignment explanation
Indices: 74575657--74576063 Score: 314
Period size: 47 Copynumber: 8.7 Consensus size: 46
74575647 ATAAGTTGCC
* * * *
74575657 GATGCCATGTCCTAGACATGGTCTTACATTGGCTAGCATCATTGAGGCT
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGC-ATCATCATCGAGGCT
* * * **
74575706 GATGCCATGTCCCAGACATGGTCTTATACTAG-TTC-TCGTATATATGTGCT
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCATCATC--ATCGA-G-GCT
* * *
74575756 GATGCATGTCCCAGACATGTCTTACACTAGCA-CAAC-TCTTA-GCT
1 GATGCATGTCCCAGACATGTCTTACACTGGCATCATCATC-GAGGCT
* * *
74575800 GATGCGTGTCCCAGACACGTCTTACACTGGCTATCATCATCGAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGC-ATCATCATCGAGGCT
* *
74575847 GATGCATGTCCCAGACATGTCTTACACTGGCA-CAAC-TCTTA-GCT
1 GATGCATGTCCCAGACATGTCTTACACTGGCATCATCATC-GAGGCT
* ** *
74575891 GATGCGTGTCCCAGACATGTCTTACACTACCTATCATCATCGAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGC-ATCATCATCGAGGCT
* **
74575938 GATGCATGTCCCA-AGCATGTCTTACACTGGCACTCATC-TCTACACT
1 GATGCATGTCCCAGA-CATGTCTTACACTGGCA-TCATCATCGAGGCT
* * * * *
74575984 GATGCCATGTCCCAGACATGATCTTATACTAGCACTCATAAT-GTGGCC
1 GATG-CATGTCCCAGACATG-TCTTACACTGGCA-TCATCATCGAGGCT
74576032 GATGCATGTCCCAGACATGTCTTACACTGGCA
1 GATGCATGTCCCAGACATGTCTTACACTGGCA
74576064 CACAAGAAAT
Statistics
Matches: 290, Mismatches: 46, Indels: 47
0.76 0.12 0.12
Matches are distributed among these distances:
44 63 0.22
45 6 0.02
46 33 0.11
47 99 0.34
48 37 0.13
49 45 0.16
50 7 0.02
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (46 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCATCATCATCGAGGCT
Found at i:74575863 original size:91 final size:91
Alignment explanation
Indices: 74575756--74576065 Score: 439
Period size: 91 Copynumber: 3.4 Consensus size: 91
74575746 TATATGTGCT
* *
74575756 GATGCATGTCCCAGACATGTCTTACACTAGCACAACTCTTAGCTGATGCGTGTCCCAGACACGTC
1 GATGCATGTCCCAGACATGTCTTACACTGGCACAACTCTTAGCTGATGCGTGTCCCAGACATGTC
*
74575821 TTACACTGGCTATCATCATCGAGGCC
66 TTACACTAGCTATCATCATCGAGGCC
74575847 GATGCATGTCCCAGACATGTCTTACACTGGCACAACTCTTAGCTGATGCGTGTCCCAGACATGTC
1 GATGCATGTCCCAGACATGTCTTACACTGGCACAACTCTTAGCTGATGCGTGTCCCAGACATGTC
*
74575912 TTACACTACCTATCATCATCGAGGCC
66 TTACACTAGCTATCATCATCGAGGCC
* * *
74575938 GATGCATGTCCCA-AGCATGTCTTACACTGGCAC-TCATCTCTACACTGATGCCATGTCCCAGAC
1 GATGCATGTCCCAGA-CATGTCTTACACTGGCACAAC-TCT-TA-GCTGATG-CGTGTCCCAGAC
* * *
74576001 ATGATCTTATACTAGC-ACTCATAAT-GTGGCC
61 ATG-TCTTACACTAGCTA-TCATCATCGAGGCC
74576032 GATGCATGTCCCAGACATGTCTTACACTGGCACA
1 GATGCATGTCCCAGACATGTCTTACACTGGCACA
74576066 CAAGAAATCC
Statistics
Matches: 199, Mismatches: 11, Indels: 14
0.89 0.05 0.06
Matches are distributed among these distances:
90 2 0.01
91 121 0.61
92 2 0.01
93 6 0.03
94 51 0.26
95 17 0.09
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.26
Consensus pattern (91 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCACAACTCTTAGCTGATGCGTGTCCCAGACATGTC
TTACACTAGCTATCATCATCGAGGCC
Found at i:74580462 original size:104 final size:104
Alignment explanation
Indices: 74580282--74580491 Score: 393
Period size: 104 Copynumber: 2.0 Consensus size: 104
74580272 TAACACGCCC
* *
74580282 CTTACCACTAGGCTAGCATGCTCACTTTGTCATACTTTAGACAAGTTCTGCATATAACCATACTG
1 CTTACCACTAGGCTAGCATGCTCACTCTGTCATACTTTAGACAAGTTCTGCATATAACCATACTA
74580347 ACCAAGGGTAGGGGTTTAACCTTAGAAAGAAAACATTTG
66 ACCAAGGGTAGGGGTTTAACCTTAGAAAGAAAACATTTG
*
74580386 CTTACCACTAGGCTAGCATGCTCACTCTGTCATGCTTTAGACAAGTTCTGCATATAACCATACTA
1 CTTACCACTAGGCTAGCATGCTCACTCTGTCATACTTTAGACAAGTTCTGCATATAACCATACTA
74580451 ACCAAGGGTAGGGGTTTAACCTTAGAAAGAAAACATTTG
66 ACCAAGGGTAGGGGTTTAACCTTAGAAAGAAAACATTTG
74580490 CT
1 CT
74580492 CAAGGCAAGG
Statistics
Matches: 103, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
104 103 1.00
ACGTcount: A:0.31, C:0.22, G:0.18, T:0.29
Consensus pattern (104 bp):
CTTACCACTAGGCTAGCATGCTCACTCTGTCATACTTTAGACAAGTTCTGCATATAACCATACTA
ACCAAGGGTAGGGGTTTAACCTTAGAAAGAAAACATTTG
Found at i:74593491 original size:40 final size:39
Alignment explanation
Indices: 74593440--74593594 Score: 138
Period size: 38 Copynumber: 4.0 Consensus size: 39
74593430 TCCAGTTACT
* * * *
74593440 AGCACAAAGCCTGCGGGACTTTAGGCCCAGATATAT-TTCC
1 AGCACATAGCCTGCGGGACCTCAAGCCC-GA-ATATCTTCC
**
74593480 AGCACATAGCCTGC-GGACCTCAATTCCGAATATCTTCC
1 AGCACATAGCCTGCGGGACCTCAAGCCCGAATATCTTCC
** *
74593518 AGCACATAGCCTGC-GGACCTCAAGTTCGAATATGTTCC
1 AGCACATAGCCTGCGGGACCTCAAGCCCGAATATCTTCC
* * * * *
74593556 AGCACGTAGCCTGC-GAACCTCAAGTCCGGATATGTTCC
1 AGCACATAGCCTGCGGGACCTCAAGCCCGAATATCTTCC
74593594 A
1 A
74593595 AATACCACAC
Statistics
Matches: 101, Mismatches: 13, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
37 4 0.04
38 76 0.75
39 8 0.08
40 13 0.13
ACGTcount: A:0.26, C:0.30, G:0.21, T:0.23
Consensus pattern (39 bp):
AGCACATAGCCTGCGGGACCTCAAGCCCGAATATCTTCC
Found at i:74593525 original size:38 final size:38
Alignment explanation
Indices: 74593472--74593594 Score: 178
Period size: 38 Copynumber: 3.3 Consensus size: 38
74593462 AGGCCCAGAT
74593472 ATAT-TTCCAGCACATAGCCTGCGGACCTCAATTCCGA
1 ATATGTTCCAGCACATAGCCTGCGGACCTCAATTCCGA
*
74593509 ATATCTTCCAGCACATAGCCTGCGGACCTCAAGTT-CGA
1 ATATGTTCCAGCACATAGCCTGCGGACCTCAA-TTCCGA
* * * *
74593547 ATATGTTCCAGCACGTAGCCTGCGAACCTCAAGTCCGG
1 ATATGTTCCAGCACATAGCCTGCGGACCTCAATTCCGA
74593585 ATATGTTCCA
1 ATATGTTCCA
74593595 AATACCACAC
Statistics
Matches: 78, Mismatches: 5, Indels: 5
0.89 0.06 0.06
Matches are distributed among these distances:
37 5 0.06
38 71 0.91
39 2 0.03
ACGTcount: A:0.26, C:0.31, G:0.19, T:0.24
Consensus pattern (38 bp):
ATATGTTCCAGCACATAGCCTGCGGACCTCAATTCCGA
Found at i:74601264 original size:38 final size:38
Alignment explanation
Indices: 74601205--74601333 Score: 186
Period size: 38 Copynumber: 3.4 Consensus size: 38
74601195 GACTTTAGGC
* *
74601205 CCGGATATATTTCTAGCACATAGCCTGCGGACCTCAAGT
1 CCGGATAT-GTTCCAGCACATAGCCTGCGGACCTCAAGT
* *
74601244 CCGGATATTTTCCAGCACATAGCCTGCGGATCTCAAGT
1 CCGGATATGTTCCAGCACATAGCCTGCGGACCTCAAGT
* * *
74601282 TCGGATATGTTCTAGCACGTAGCCTGCGGACCTCAAGT
1 CCGGATATGTTCCAGCACATAGCCTGCGGACCTCAAGT
74601320 CCGGATATGTTCCA
1 CCGGATATGTTCCA
74601334 AATACCACGC
Statistics
Matches: 81, Mismatches: 9, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
38 73 0.90
39 8 0.10
ACGTcount: A:0.23, C:0.28, G:0.22, T:0.26
Consensus pattern (38 bp):
CCGGATATGTTCCAGCACATAGCCTGCGGACCTCAAGT
Found at i:74603886 original size:40 final size:40
Alignment explanation
Indices: 74603787--74603977 Score: 242
Period size: 40 Copynumber: 4.8 Consensus size: 40
74603777 TGGATGATAA
* * * * **
74603787 CCGGGCTAAGTCCCGAAGGCATCTGCGCTAGTGACTAGTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
74603827 CCGGGC-AAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
74603866 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
* * * *
74603906 CTGGGCTAAGTCCCGAAGGCAATTGTGCGAGTCACTCTAA-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AAAT
* * *
74603946 CCGGGCTATGTCCCAAAGGCATTTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
74603978 AGCTATATCC
Statistics
Matches: 134, Mismatches: 15, Indels: 4
0.88 0.10 0.03
Matches are distributed among these distances:
39 33 0.25
40 99 0.74
41 2 0.01
ACGTcount: A:0.24, C:0.25, G:0.29, T:0.23
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
Found at i:74612050 original size:39 final size:40
Alignment explanation
Indices: 74611863--74612051 Score: 251
Period size: 40 Copynumber: 4.8 Consensus size: 40
74611853 TGGATGATAA
* * * * **
74611863 CCGGGCTAAGTCCCGAAGGCATCTGCGCTAGTGACTAGTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
74611903 CC-GGC-AAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
74611941 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
* *
74611981 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTCTAA-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AAAT
* *
74612021 CCGGGCTATGT-CCGAAGGCATTTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
74612052 AGCTATATCC
Statistics
Matches: 135, Mismatches: 11, Indels: 7
0.88 0.07 0.05
Matches are distributed among these distances:
38 29 0.21
39 24 0.18
40 80 0.59
41 2 0.01
ACGTcount: A:0.23, C:0.24, G:0.29, T:0.23
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
Found at i:74613840 original size:26 final size:26
Alignment explanation
Indices: 74613804--74613858 Score: 110
Period size: 26 Copynumber: 2.1 Consensus size: 26
74613794 TACTTAGTTT
74613804 TTCTCCCTAAATCCAAATTCGGCATA
1 TTCTCCCTAAATCCAAATTCGGCATA
74613830 TTCTCCCTAAATCCAAATTCGGCATA
1 TTCTCCCTAAATCCAAATTCGGCATA
74613856 TTC
1 TTC
74613859 AACAAACCAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.29, C:0.31, G:0.07, T:0.33
Consensus pattern (26 bp):
TTCTCCCTAAATCCAAATTCGGCATA
Found at i:74616300 original size:13 final size:13
Alignment explanation
Indices: 74616284--74616316 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
74616274 TTTGATTAAA
*
74616284 TTAGTTAATTAGT
1 TTAGATAATTAGT
74616297 TTAGATAATTAGT
1 TTAGATAATTAGT
74616310 TTA-ATAA
1 TTAGATAA
74616317 ACAAACCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:74620508 original size:40 final size:40
Alignment explanation
Indices: 74620464--74620647 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
74620454 GCTACTCGTT
*
74620464 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
74620504 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCA
* *
74620544 CCAATGCCTTCGGG-CTTAGCCCGG-AATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
* * * * *
74620583 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGTTATAGTAAC-TCGCA
74620624 CAAA-GCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
74620648 GCATCATTCG
Statistics
Matches: 124, Mismatches: 12, Indels: 16
0.82 0.08 0.11
Matches are distributed among these distances:
38 2 0.02
39 31 0.25
40 77 0.62
41 14 0.11
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:74620579 original size:79 final size:80
Alignment explanation
Indices: 74620466--74620647 Score: 228
Period size: 79 Copynumber: 2.3 Consensus size: 80
74620456 TACTCGTTCA
* *
74620466 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGA
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGGA
* *
74620530 TTTAGTAAC-TCGCACC
65 TATAGTAACTTAGCA-C
**
74620546 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
* *
74620609 TATGGTCACTTAGCAC
65 TATAGTAACTTAGCAC
*
74620625 AAAGCCTTCGGGACTTAGCCCGG
1 AATGCCTTCGGGACTTAGCCCGG
74620648 GCATCATTCG
Statistics
Matches: 89, Mismatches: 9, Indels: 8
0.84 0.08 0.08
Matches are distributed among these distances:
78 4 0.04
79 59 0.66
80 26 0.29
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (80 bp):
AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGAT
ATAGTAACTTAGCAC
Found at i:74625073 original size:5 final size:5
Alignment explanation
Indices: 74625063--74625152 Score: 67
Period size: 5 Copynumber: 16.8 Consensus size: 5
74625053 TGAATCCTCC
74625063 TATTT TATTT T-TATT TATTCT TATTCT TATTT TATTT TA-TT TATTT
1 TATTT TATTT TAT-TT TATT-T TATT-T TATTT TATTT TATTT TATTT
* * *
74625109 TATTCT TATTT TCTTT CGATTTT TATTT TCATTT CAATTT TATT
1 TATT-T TATTT TATTT -TA-TTT TATTT T-ATTT -TATTT TATT
74625153 ATTTTGAAAG
Statistics
Matches: 70, Mismatches: 6, Indels: 18
0.74 0.06 0.19
Matches are distributed among these distances:
4 5 0.07
5 36 0.51
6 26 0.37
7 3 0.04
ACGTcount: A:0.19, C:0.08, G:0.01, T:0.72
Consensus pattern (5 bp):
TATTT
Found at i:74625131 original size:31 final size:32
Alignment explanation
Indices: 74625064--74625136 Score: 87
Period size: 32 Copynumber: 2.3 Consensus size: 32
74625054 GAATCCTCCT
* *
74625064 ATTTTATTTTTATTTATTCTTATTCTTATTTT
1 ATTTTATTTATATTTATTCTTATTCTTATTTG
*
74625096 ATTTTATTTAT-TTTATTCTTATT-TTCTTTCG
1 ATTTTATTTATATTTATTCTTATTCTTATTT-G
74625127 ATTTTTATTT
1 A-TTTTATTT
74625137 TCATTTCAAT
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
30 5 0.14
31 13 0.36
32 18 0.50
ACGTcount: A:0.18, C:0.07, G:0.01, T:0.74
Consensus pattern (32 bp):
ATTTTATTTATATTTATTCTTATTCTTATTTG
Found at i:74625136 original size:17 final size:18
Alignment explanation
Indices: 74625114--74625149 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
74625104 TATTTTATTC
*
74625114 TTATTTTC-TTTCGATTT
1 TTATTTTCATTTCAATTT
74625131 TTATTTTCATTTCAATTT
1 TTATTTTCATTTCAATTT
74625149 T
1 T
74625150 ATTATTTTGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.17, C:0.11, G:0.03, T:0.69
Consensus pattern (18 bp):
TTATTTTCATTTCAATTT
Found at i:74625150 original size:17 final size:17
Alignment explanation
Indices: 74625114--74625152 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
74625104 TATTTTATTC
*
74625114 TTATTTTCTTTCGATTT
1 TTATTTTCTTTCGAATT
74625131 TTATTTTCATTTC-AATT
1 TTATTTTC-TTTCGAATT
74625148 TTATT
1 TTATT
74625153 ATTTTGAAAG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 16 0.80
18 4 0.20
ACGTcount: A:0.18, C:0.10, G:0.03, T:0.69
Consensus pattern (17 bp):
TTATTTTCTTTCGAATT
Found at i:74628071 original size:13 final size:13
Alignment explanation
Indices: 74628055--74628087 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
74628045 TTTGATTAAA
*
74628055 TTAGTTAATTAGT
1 TTAGATAATTAGT
74628068 TTAGATAATTAGT
1 TTAGATAATTAGT
74628081 TTA-ATAA
1 TTAGATAA
74628088 ACAAACCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:74630344 original size:55 final size:56
Alignment explanation
Indices: 74630262--74630382 Score: 149
Period size: 55 Copynumber: 2.2 Consensus size: 56
74630252 AACCTGTGTG
* * *
74630262 CAACACTGAC-TTCAACACATGGCCATGGCACACGCCCGTGTGACCTGCCCATGTA
1 CAACACTGACTTTAAACACATGGCCATGGCACACGCCCATGTGACCTACCCATGTA
* * * *
74630317 CGACACTGACTTTAAGACACA-GG-CATGGCACACGCCCATGTGGCCTACTCGTGTA
1 CAACACTGACTTTAA-ACACATGGCCATGGCACACGCCCATGTGACCTACCCATGTA
74630372 CAACACTGACT
1 CAACACTGACT
74630383 AAAAATTTTA
Statistics
Matches: 56, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
55 46 0.82
56 5 0.09
57 5 0.09
ACGTcount: A:0.26, C:0.34, G:0.21, T:0.19
Consensus pattern (56 bp):
CAACACTGACTTTAAACACATGGCCATGGCACACGCCCATGTGACCTACCCATGTA
Found at i:74631366 original size:47 final size:46
Alignment explanation
Indices: 74631136--74631413 Score: 183
Period size: 47 Copynumber: 5.9 Consensus size: 46
74631126 GGGATAAGTT
* * *
74631136 GCCGATGCAATGTCCCAAACATGGTCTTACACTAGCTA-GCATTATCGAG
1 GCCGATGC-ATGTCCCAAACAT-GTCTTACACTAGC-ACTCATCAT-TAG
* * ** **
74631185 GCCGATGCCATGTCCCAGACATGATCTTATACTAGTTCTTGT-ATATACG
1 GCCGATG-CATGTCCCAAACATG-TCTTACACTAGCACTCATCAT-TA-G
* * *
74631234 TGCTGATGCATGTCCCAGACATGTCTTACACTAGCAC-AACTC-TTA-
1 -GCCGATGCATGTCCCAAACATGTCTTACACTAGCACTCA-TCATTAG
* * * * *
74631279 GCCGATGCGTTTCCCAAACACGTCTTACACTGGTTA-TCATCATTGAG
1 GCCGATGCATGTCCCAAACATGTCTTACACTAG-CACTCATCATT-AG
*
74631326 GCCGATGCATGTCCCAAACATGTCTTACACTAGCACTCATC-TCTAC
1 GCCGATGCATGTCCCAAACATGTCTTACACTAGCACTCATCAT-TAG
* * *
74631372 GCCGATGCCATGTCCCAGACATGGTCTTATACTGGCACTCAT
1 GCCGATG-CATGTCCCAAACAT-GTCTTACACTAGCACTCAT
74631414 AATGTGGTTT
Statistics
Matches: 181, Mismatches: 32, Indels: 33
0.74 0.13 0.13
Matches are distributed among these distances:
44 29 0.16
45 4 0.02
46 11 0.06
47 50 0.28
48 34 0.19
49 46 0.25
50 7 0.04
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (46 bp):
GCCGATGCATGTCCCAAACATGTCTTACACTAGCACTCATCATTAG
Found at i:74633699 original size:37 final size:35
Alignment explanation
Indices: 74633651--74633742 Score: 100
Period size: 34 Copynumber: 2.6 Consensus size: 35
74633641 GTTTCAGTTA
* *
74633651 GGGCCTCAGCCCCTTTTTTCAGTAACAGTA-TCAGTCT
1 GGGCCTCAGCCCC--ATTTCAGTAACAG-AGACAGTCT
*
74633688 GGGCCTGAG-CCCATTTCAGTAACAGAGACAGTCT
1 GGGCCTCAGCCCCATTTCAGTAACAGAGACAGTCT
*
74633722 GGGCCTTAG-CCCATTTCAGTA
1 GGGCCTCAGCCCCATTTCAGTA
74633743 CAGTATGCAA
Statistics
Matches: 50, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
33 1 0.02
34 38 0.76
36 3 0.06
37 8 0.16
ACGTcount: A:0.22, C:0.28, G:0.23, T:0.27
Consensus pattern (35 bp):
GGGCCTCAGCCCCATTTCAGTAACAGAGACAGTCT
Found at i:74633710 original size:34 final size:34
Alignment explanation
Indices: 74633667--74633748 Score: 123
Period size: 34 Copynumber: 2.4 Consensus size: 34
74633657 CAGCCCCTTT
74633667 TTTCAGTAACAGTATCAGTCTGGGCCTGAGCCCA
1 TTTCAGTAACAGTATCAGTCTGGGCCTGAGCCCA
* *
74633701 TTTCAGTAACAG-AGACAGTCTGGGCCTTAGCCCA
1 TTTCAGTAACAGTA-TCAGTCTGGGCCTGAGCCCA
74633735 TTTCAGT-ACAGTAT
1 TTTCAGTAACAGTAT
74633749 GCAACCAAAT
Statistics
Matches: 43, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
33 5 0.12
34 38 0.88
ACGTcount: A:0.26, C:0.24, G:0.22, T:0.28
Consensus pattern (34 bp):
TTTCAGTAACAGTATCAGTCTGGGCCTGAGCCCA
Found at i:74647097 original size:23 final size:23
Alignment explanation
Indices: 74647071--74647115 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
74647061 AAGATCGGAC
*
74647071 TGTTACAATAACTTAGG-TTTGAA
1 TGTTA-AATAACCTAGGCTTTGAA
*
74647094 TGTTAGATAACCTAGGCTTTGA
1 TGTTAAATAACCTAGGCTTTGA
74647116 TATAACTGAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 9 0.47
23 10 0.53
ACGTcount: A:0.31, C:0.11, G:0.20, T:0.38
Consensus pattern (23 bp):
TGTTAAATAACCTAGGCTTTGAA
Found at i:74650487 original size:18 final size:19
Alignment explanation
Indices: 74650461--74650498 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
74650451 TGCAGCAGAA
74650461 TTTGATAAAAATCA-TATT
1 TTTGATAAAAATCATTATT
* *
74650479 TTTGCTAAAATTCATTATT
1 TTTGATAAAAATCATTATT
74650498 T
1 T
74650499 GGTATATTCC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 12 0.71
19 5 0.29
ACGTcount: A:0.37, C:0.08, G:0.05, T:0.50
Consensus pattern (19 bp):
TTTGATAAAAATCATTATT
Found at i:74659336 original size:27 final size:28
Alignment explanation
Indices: 74659252--74659349 Score: 119
Period size: 27 Copynumber: 3.5 Consensus size: 28
74659242 CGTGAGATTG
* * *
74659252 GCACTAAGTGTGCGGGTTTAAATTGT-TCA
1 GCACTAAGTGTGCGAGTTT-GATTATAT-A
74659281 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
74659309 GCACTAAGTGTGCGAG-TTGATTTTATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
74659336 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
74659350 GACTTAATAT
Statistics
Matches: 63, Mismatches: 5, Indels: 4
0.88 0.07 0.06
Matches are distributed among these distances:
27 23 0.37
28 21 0.33
29 19 0.30
ACGTcount: A:0.24, C:0.13, G:0.29, T:0.34
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:74659362 original size:27 final size:27
Alignment explanation
Indices: 74659280--74659362 Score: 87
Period size: 27 Copynumber: 3.0 Consensus size: 27
74659270 TAAATTGTTC
* *
74659280 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* * *
74659308 AGCACTAAGTGTGCGAGTTGATTTTAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
74659335 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
74659362 A
1 A
74659363 TATTTTTGAA
Statistics
Matches: 48, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
27 28 0.58
28 20 0.42
ACGTcount: A:0.29, C:0.12, G:0.25, T:0.34
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:74660923 original size:46 final size:45
Alignment explanation
Indices: 74660856--74661027 Score: 188
Period size: 46 Copynumber: 3.7 Consensus size: 45
74660846 AACCCGCCCC
*
74660856 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTT-GCATCCA
* *
74660902 TAAGTGAACTCGGACTCAACTCAACAAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTGCATCCA
* * ** *
74660950 TCA-CGAACTCGGACTCAACTCAACGAGTTCGAACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGC-GTTGCATCCA
74660995 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
74661028 ATGCTCAACC
Statistics
Matches: 105, Mismatches: 13, Indels: 16
0.78 0.10 0.12
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 58 0.55
47 26 0.25
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (45 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTGCATCCA
Found at i:74660993 original size:93 final size:93
Alignment explanation
Indices: 74660861--74661031 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
74660851 GCCCCTAAGT
** *
74660861 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
74660926 CAAGTTCGGATGCCTAGTTACATCTCAC
66 CAAGTTCGGATGCCTAGTTACATCTCAC
* *
74660954 GAACTCGGACTCAACTCAACGAGTTCGAACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
74661019 CGAGTTCGGATGC
66 CAAGTTCGGATGC
74661032 TCAACCATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CAAGTTCGGATGCCTAGTTACATCTCAC
Found at i:74667779 original size:30 final size:31
Alignment explanation
Indices: 74667735--74667793 Score: 75
Period size: 30 Copynumber: 1.9 Consensus size: 31
74667725 CCCGAGATTT
74667735 GGGGCAAAAGTGTAAATATG-TAAAATTTTA
1 GGGGCAAAAGTGTAAATATGCTAAAATTTTA
* * * *
74667765 GGGGTAAAATTGTAATTTTGCTAAAATTT
1 GGGGCAAAAGTGTAAATATGCTAAAATTT
74667794 GAATTAAAGA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
30 16 0.67
31 8 0.33
ACGTcount: A:0.39, C:0.03, G:0.22, T:0.36
Consensus pattern (31 bp):
GGGGCAAAAGTGTAAATATGCTAAAATTTTA
Found at i:74668264 original size:46 final size:44
Alignment explanation
Indices: 74668212--74668386 Score: 165
Period size: 46 Copynumber: 3.8 Consensus size: 44
74668202 TGGTTGAGCA
74668212 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA-GGATG-GAATG
* * * *
74668258 TTCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA-GATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGGATGGAA-T--G
* * **
74668303 CATCCGAACTTGTTGAGTTGATTCCGAGTTCACTTATGGATGTGAACA
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA-GGATG-GAATG
* *
74668351 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGG
74668387 GGCGGGTTAC
Statistics
Matches: 104, Mismatches: 16, Indels: 19
0.75 0.12 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 5 0.05
46 58 0.56
47 26 0.25
48 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (44 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGGATGGAATG
Found at i:74668368 original size:93 final size:93
Alignment explanation
Indices: 74668209--74668379 Score: 261
Period size: 93 Copynumber: 1.8 Consensus size: 93
74668199 GGATGGTTGA
****
74668209 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAATGTTCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAACACCCGAACTCGTTGAGT
74668274 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * * * *
74668302 GCATCCGAACTTGTTGAGTTGATTCCGAGTTCACTTATGGATGTGAACACCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAACACCCGAACTCGTTGAGT
74668367 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
74668380 ACTTAGGGGC
Statistics
Matches: 69, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
93 69 1.00
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAACACCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:74677797 original size:34 final size:34
Alignment explanation
Indices: 74677754--74677842 Score: 144
Period size: 34 Copynumber: 2.6 Consensus size: 34
74677744 TCAAATGGGT
*
74677754 GTAGGATCAATCAACTAATTGTAAAGTCACCATA
1 GTAGGATCAATCAACTAATTGGAAAGTCACCATA
*
74677788 GTAGGATCAATTAACTAATTGGAAAGTCACCATA
1 GTAGGATCAATCAACTAATTGGAAAGTCACCATA
74677822 GTAGGATCAATCAGA-TAATTG
1 GTAGGATCAATCA-ACTAATTG
74677843 CTTTCTCAAA
Statistics
Matches: 51, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
34 50 0.98
35 1 0.02
ACGTcount: A:0.40, C:0.15, G:0.18, T:0.27
Consensus pattern (34 bp):
GTAGGATCAATCAACTAATTGGAAAGTCACCATA
Found at i:74679051 original size:27 final size:27
Alignment explanation
Indices: 74679003--74679161 Score: 184
Period size: 27 Copynumber: 5.9 Consensus size: 27
74678993 GCGAGGCTGC
* *
74679003 CAGATATTGTGAC-GAAGTCACCAGATA
1 CAGATATTGTGGCAG-AGCCACCAGATA
74679030 CAGATATTGTGGCAGAGCCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
74679056 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* *
74679083 CAGATAATCGTGGCATAGCCACCAGA-A
1 CAGAT-ATTGTGGCAGAGCCACCAGATA
74679110 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* *
74679137 TAGATAATTGTGGCATAGCCACCAG
1 CAGAT-ATTGTGGCAGAGCCACCAG
74679162 GACGCTTCCT
Statistics
Matches: 116, Mismatches: 8, Indels: 16
0.83 0.06 0.11
Matches are distributed among these distances:
26 10 0.09
27 101 0.87
28 5 0.04
ACGTcount: A:0.35, C:0.22, G:0.25, T:0.19
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:74679096 original size:54 final size:54
Alignment explanation
Indices: 74679021--74679161 Score: 239
Period size: 54 Copynumber: 2.6 Consensus size: 54
74679011 GTGACGAAGT
*
74679021 CACCAGATACAGAT-ATTGTGGCAGAGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGAT-CAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
*
74679075 CACCAGATCAGATAATCGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
*
74679129 CACCAGATTAGATAATTGTGGCATAGCCACCAG
1 CACCAGATCAGATAATTGTGGCATAGCCACCAG
74679162 GACGCTTCCT
Statistics
Matches: 82, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
53 5 0.06
54 77 0.94
ACGTcount: A:0.35, C:0.23, G:0.24, T:0.18
Consensus pattern (54 bp):
CACCAGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
Found at i:74680740 original size:26 final size:26
Alignment explanation
Indices: 74680710--74680817 Score: 207
Period size: 26 Copynumber: 4.2 Consensus size: 26
74680700 TGAGATTCCC
74680710 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
74680736 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
74680762 ATCATGAAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
74680788 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
74680814 ATCA
1 ATCA
74680818 ATTTGTATCA
Statistics
Matches: 80, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 80 1.00
ACGTcount: A:0.36, C:0.27, G:0.06, T:0.31
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:74688707 original size:27 final size:27
Alignment explanation
Indices: 74688669--74688722 Score: 99
Period size: 27 Copynumber: 2.0 Consensus size: 27
74688659 CAAAAAGTAC
*
74688669 ACTCATTACTTATGTTAATTAATATAT
1 ACTCATTACTTATGCTAATTAATATAT
74688696 ACTCATTACTTATGCTAATTAATATAT
1 ACTCATTACTTATGCTAATTAATATAT
74688723 CTAAAATTAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.37, C:0.13, G:0.04, T:0.46
Consensus pattern (27 bp):
ACTCATTACTTATGCTAATTAATATAT
Found at i:74690401 original size:43 final size:41
Alignment explanation
Indices: 74690329--74690431 Score: 109
Period size: 42 Copynumber: 2.4 Consensus size: 41
74690319 TGTAAGACCG
*
74690329 TGTCTGGGACATAGGCCTCGATTGAGATTTACGTATAAAACCA
1 TGTCTGGGACATAGGCATCGATT-AGATTT-CGTATAAAACCA
* * * *
74690372 TGTCTGGGACATTGGCATCGTATCT-GATTTCGTGTAAGACCC
1 TGTCTGGGACATAGGCATCG-AT-TAGATTTCGTATAAAACCA
*
74690414 TGTCTGGGACAGAGGCAT
1 TGTCTGGGACATAGGCAT
74690432 GGATATTGAA
Statistics
Matches: 51, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
42 25 0.49
43 23 0.45
44 2 0.04
45 1 0.02
ACGTcount: A:0.24, C:0.19, G:0.27, T:0.29
Consensus pattern (41 bp):
TGTCTGGGACATAGGCATCGATTAGATTTCGTATAAAACCA
Found at i:74690431 original size:42 final size:41
Alignment explanation
Indices: 74690316--74690462 Score: 143
Period size: 43 Copynumber: 3.5 Consensus size: 41
74690306 GTTTGAGACA
* *
74690316 TCGTGTAAGACCGTGTCTGGGACATAGGCCTCG-ATTGAGATT
1 TCGTGTAAGACCATGTCTGGGACATAGGCATCGTATT--GATT
* * *
74690358 TACGTATAAAACCATGTCTGGGACATTGGCATCGTATCTGATT
1 T-CGTGTAAGACCATGTCTGGGACATAGGCATCGTAT-TGATT
* * *
74690401 TCGTGTAAGACCCTGTCTGGGACAGAGGCATGGATATTGAATT
1 TCGTGTAAGACCATGTCTGGGACATAGGCATCG-TATTG-ATT
* *
74690444 ACATGTAAGACCATGTCTG
1 TCGTGTAAGACCATGTCTG
74690463 AGATGCCGGC
Statistics
Matches: 86, Mismatches: 14, Indels: 9
0.79 0.13 0.08
Matches are distributed among these distances:
42 29 0.34
43 54 0.63
44 2 0.02
45 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.29
Consensus pattern (41 bp):
TCGTGTAAGACCATGTCTGGGACATAGGCATCGTATTGATT
Found at i:74693271 original size:34 final size:34
Alignment explanation
Indices: 74693220--74693319 Score: 84
Period size: 34 Copynumber: 3.0 Consensus size: 34
74693210 CAGTGTTGGA
*
74693220 CAGTTTGGG-CTTAAGCCCATATCAGTAGCAATAT
1 CAGTGTGGGCCTT-AGCCCATATCAGTAGCAATAT
* *
74693254 CAGTGTGGGCCTTAGCCCAT-TACATTAGCAGTAAT
1 CAGTGTGGGCCTTAGCCCATAT-CAGTAGCAAT-AT
**
74693289 -AGTGTAAGCCTTAGCCCA-ATTCAGTA-CAATA
1 CAGTGTGGGCCTTAGCCCATA-TCAGTAGCAATA
74693320 CCAGATATCC
Statistics
Matches: 54, Mismatches: 7, Indels: 12
0.74 0.10 0.16
Matches are distributed among these distances:
32 1 0.02
33 4 0.07
34 43 0.80
35 6 0.11
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.28
Consensus pattern (34 bp):
CAGTGTGGGCCTTAGCCCATATCAGTAGCAATAT
Found at i:74694715 original size:17 final size:17
Alignment explanation
Indices: 74694695--74694727 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
74694685 GCTTTAGAAA
74694695 CAAATGA-AAAGAAACCC
1 CAAATGACAAA-AAACCC
74694712 CAAATGACAAAAAACC
1 CAAATGACAAAAAACC
74694728 AAAAGAAAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 12 0.80
18 3 0.20
ACGTcount: A:0.61, C:0.24, G:0.09, T:0.06
Consensus pattern (17 bp):
CAAATGACAAAAAACCC
Found at i:74703384 original size:55 final size:56
Alignment explanation
Indices: 74703222--74703393 Score: 256
Period size: 56 Copynumber: 3.1 Consensus size: 56
74703212 TAGGGTCTTA
* * * *
74703222 ATCGTAATCACATATCAATGCCAATGTATTGAACATGGTCTTACTCGCACACATAT
1 ATCGAAATCACATATCGATGCCAACGTATTAAACATGGTCTTACTCGCACACATAT
**
74703278 ATCGAAATCACATATCGATGCCAACGTATTAAATGTGGTCTTACTCGCACACATAT
1 ATCGAAATCACATATCGATGCCAACGTATTAAACATGGTCTTACTCGCACACATAT
* * *
74703334 ATCGAAATTACATATCGATG-CAACGTATTAAACATGGTCTTACTCACACACATTT
1 ATCGAAATCACATATCGATGCCAACGTATTAAACATGGTCTTACTCGCACACATAT
74703389 ATCGA
1 ATCGA
74703394 TGCCATGGTC
Statistics
Matches: 105, Mismatches: 11, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
55 36 0.34
56 69 0.66
ACGTcount: A:0.35, C:0.23, G:0.13, T:0.30
Consensus pattern (56 bp):
ATCGAAATCACATATCGATGCCAACGTATTAAACATGGTCTTACTCGCACACATAT
Found at i:74716476 original size:40 final size:39
Alignment explanation
Indices: 74716392--74716576 Score: 185
Period size: 40 Copynumber: 4.6 Consensus size: 39
74716382 TTGAATGATG
* * * *
74716392 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
74716432 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
* *
74716472 TCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
*
74716511 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AA
** *
74716552 -CCGGGCTGTGTCCCAAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
74716577 AACGAGTAGC
Statistics
Matches: 122, Mismatches: 19, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
39 34 0.28
40 78 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:74716528 original size:79 final size:80
Alignment explanation
Indices: 74716392--74716548 Score: 203
Period size: 79 Copynumber: 2.0 Consensus size: 80
74716382 TTGAATGATG
* *
74716392 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCTTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
74716457 GTGCGAGATACTAAT
66 GTGCGAGATACTAAT
* * * **
74716472 TCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGC-TTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
*
74716534 TTGTGCGAGTTACTA
64 TTGTGCGAGATACTA
74716549 TAACCGGGCT
Statistics
Matches: 67, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
78 1 0.01
79 49 0.73
80 17 0.25
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCTTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTAAT
Found at i:74716598 original size:79 final size:79
Alignment explanation
Indices: 74716445--74716609 Score: 183
Period size: 79 Copynumber: 2.1 Consensus size: 79
74716435 GGACTAAGAT
* * **
74716445 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCAAAGGCATTGGAACGAGTTACTAA
*
74716510 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* ** *
74716524 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTGTGTCCCAAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCAAAGGCATTGGAACGAGTTA-C
* *
74716587 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
74716603 CCGAAGG
1 CCGAAGG
74716610 TATGTGATTT
Statistics
Matches: 72, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.65
80 23 0.32
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCAAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:74723692 original size:15 final size:17
Alignment explanation
Indices: 74723654--74723693 Score: 50
Period size: 15 Copynumber: 2.5 Consensus size: 17
74723644 TTATGGATTG
*
74723654 ATTTGAATGAATGTGAA
1 ATTTGAATGAATGTCAA
74723671 A-TTGAAT-AAT-TCAA
1 ATTTGAATGAATGTCAA
74723685 ATTTGAATG
1 ATTTGAATG
74723694 TATTTAGATT
Statistics
Matches: 20, Mismatches: 1, Indels: 5
0.77 0.04 0.19
Matches are distributed among these distances:
14 4 0.20
15 9 0.45
16 6 0.30
17 1 0.05
ACGTcount: A:0.42, C:0.03, G:0.17, T:0.38
Consensus pattern (17 bp):
ATTTGAATGAATGTCAA
Found at i:74724086 original size:42 final size:42
Alignment explanation
Indices: 74724025--74724133 Score: 116
Period size: 43 Copynumber: 2.6 Consensus size: 42
74724015 GATTTGAGAT
*
74724025 TTACGTGTAAGACCATGTCTGGGACATCA-AT-ATC-ATATTTGA
1 TTACATGTAAGACCATGTCTGGG--AT-AGATCATCAATATTTGA
* *
74724067 TTTCATGTAAGACCCTGTCTGGGATAGATGCATCAATATTTGA
1 TTACATGTAAGACCATGTCTGGGATAGAT-CATCAATATTTGA
**
74724110 TTACATGTAAGACCACATCTGGGA
1 TTACATGTAAGACCATGTCTGGGA
74724134 CGTTGGCATT
Statistics
Matches: 56, Mismatches: 7, Indels: 7
0.80 0.10 0.10
Matches are distributed among these distances:
39 1 0.02
40 4 0.07
42 23 0.41
43 28 0.50
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.32
Consensus pattern (42 bp):
TTACATGTAAGACCATGTCTGGGATAGATCATCAATATTTGA
Found at i:74728366 original size:18 final size:18
Alignment explanation
Indices: 74728343--74728377 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
74728333 GAGTTAAACG
74728343 AATCGAGTTATTCGAGTT
1 AATCGAGTTATTCGAGTT
*
74728361 AATCGATTTATTCGAGT
1 AATCGAGTTATTCGAGT
74728378 CAACTCAATT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.29, C:0.11, G:0.20, T:0.40
Consensus pattern (18 bp):
AATCGAGTTATTCGAGTT
Found at i:74732977 original size:19 final size:19
Alignment explanation
Indices: 74732936--74732980 Score: 65
Period size: 19 Copynumber: 2.4 Consensus size: 19
74732926 TTTTTTATTA
*
74732936 AAGTATGTTCTAGTTAGGC
1 AAGTATGTTCTAGTTACGC
74732955 AAGTATGTTCTAGTTGACG-
1 AAGTATGTTCTAGTT-ACGC
74732974 AAGTATG
1 AAGTATG
74732981 CAAGAGCTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
19 22 0.92
20 2 0.08
ACGTcount: A:0.29, C:0.09, G:0.27, T:0.36
Consensus pattern (19 bp):
AAGTATGTTCTAGTTACGC
Found at i:74735199 original size:27 final size:27
Alignment explanation
Indices: 74735071--74735200 Score: 154
Period size: 27 Copynumber: 4.9 Consensus size: 27
74735061 TACCAAAGTA
* *
74735071 ACCC-CGATTTACATAATTACCATTTT
1 ACCCTCGATTTACAGAATTACTATTTT
* * **
74735097 ACCCTCAATTTACAGAATTGCCGTTTT
1 ACCCTCGATTTACAGAATTACTATTTT
*
74735124 ACCCTCGATTTATAGAATTACTATTTT
1 ACCCTCGATTTACAGAATTACTATTTT
* *
74735151 ACCCTTGATTTACAGAATTACTGTTTT
1 ACCCTCGATTTACAGAATTACTATTTT
* *
74735178 ACCATCGATTTACAAAATTACTA
1 ACCCTCGATTTACAGAATTACTA
74735201 AAATACCCTT
Statistics
Matches: 87, Mismatches: 16, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
26 4 0.05
27 83 0.95
ACGTcount: A:0.31, C:0.22, G:0.08, T:0.39
Consensus pattern (27 bp):
ACCCTCGATTTACAGAATTACTATTTT
Found at i:74735199 original size:54 final size:54
Alignment explanation
Indices: 74735075--74735226 Score: 178
Period size: 54 Copynumber: 2.8 Consensus size: 54
74735065 AAAGTAACCC
* * ** * *
74735075 CGATTTACATAATTACCATTTTACCCTCAATTTACAGAATTGCCGTTTTACCCT
1 CGATTTACAAAATTACTATTTTACCCTTGATTTACAGAATTACCGTTTTACCAT
* * *
74735129 CGATTTATAGAATTACTATTTTACCCTTGATTTACAGAATTACTGTTTTACCAT
1 CGATTTACAAAATTACTATTTTACCCTTGATTTACAGAATTACCGTTTTACCAT
*** * *
74735183 CGATTTACAAAATTACTAAAATACCCTTGGTTTACAAAATTACC
1 CGATTTACAAAATTACTATTTTACCCTTGATTTACAGAATTACC
74735227 AAATACCCTC
Statistics
Matches: 82, Mismatches: 16, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
54 82 1.00
ACGTcount: A:0.32, C:0.21, G:0.08, T:0.39
Consensus pattern (54 bp):
CGATTTACAAAATTACTATTTTACCCTTGATTTACAGAATTACCGTTTTACCAT
Found at i:74735207 original size:27 final size:27
Alignment explanation
Indices: 74735177--74735423 Score: 177
Period size: 27 Copynumber: 9.2 Consensus size: 27
74735167 ATTACTGTTT
* * *
74735177 TACCATCGATTTACAAAATTACTAAAA
1 TACCCTCGATTTATAAAATTACCAAAA
* * *
74735204 TACCCTTGGTTTACAAAATTACC-AAA
1 TACCCTCGATTTATAAAATTACCAAAA
*
74735230 TACCCTCGA-TCAGTAAAATTACCAAAA
1 TACCCTCGATTTA-TAAAATTACCAAAA
* * * *
74735257 TACCCT-GGTCTATAAAATTGCTAAAA
1 TACCCTCGATTTATAAAATTACCAAAA
* * *
74735283 TACCC-CTGGTTTGTAAAATTACAAAAA
1 TACCCTC-GATTTATAAAATTACCAAAA
* *
74735310 TACCC-CTAGTTTGTAAAATTACCAAAA
1 TACCCTCGA-TTTATAAAATTACCAAAA
* * * *
74735337 TACCACT-GGTTTGTGAAATTACCGAAA
1 TACC-CTCGATTTATAAAATTACCAAAA
* *
74735364 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCGATTTATAAAATTACCAAAA
*
74735391 TA-CCTCTGATTTACAAAATTA-CAGAAA
1 TACCCTC-GATTTATAAAATTACCA-AAA
74735418 TACCCT
1 TACCCT
74735424 TGACTTTCTA
Statistics
Matches: 177, Mismatches: 31, Indels: 23
0.77 0.13 0.10
Matches are distributed among these distances:
25 2 0.01
26 45 0.25
27 126 0.71
28 4 0.02
ACGTcount: A:0.41, C:0.21, G:0.09, T:0.29
Consensus pattern (27 bp):
TACCCTCGATTTATAAAATTACCAAAA
Found at i:74735346 original size:54 final size:53
Alignment explanation
Indices: 74735191--74735422 Score: 200
Period size: 54 Copynumber: 4.3 Consensus size: 53
74735181 ATCGATTTAC
* * * * **
74735191 AAAATTACTAAAATACCCTTGGTTTACAAAATTACC-AAATACCCTCGATCAGT
1 AAAATTACAAAAATACCCCTAGTTTATAAAATTACCAAAATACCCT-GATTTGT
* * * * * *
74735244 AAAATTACCAAAATA-CCCTGGTCTATAAAATTGCTAAAATACCCCTGGTTTGT
1 AAAATTACAAAAATACCCCTAGTTTATAAAATTACCAAAATA-CCCTGATTTGT
* *
74735297 AAAATTACAAAAATACCCCTAGTTTGTAAAATTACCAAAATACCACTGGTTTGT
1 AAAATTACAAAAATACCCCTAGTTTATAAAATTACCAAAATACC-CTGATTTGT
* ** * * **
74735351 GAAATTACCGAAATA-CCCTCAATTTGTAAAATTACCAAAATACCTCTGATTTAC
1 AAAATTACAAAAATACCCCT-AGTTTATAAAATTACCAAAATACC-CTGATTTGT
*
74735405 AAAATTACAGAAATACCC
1 AAAATTACAAAAATACCC
74735423 TTGACTTTCT
Statistics
Matches: 148, Mismatches: 25, Indels: 10
0.81 0.14 0.05
Matches are distributed among these distances:
52 15 0.10
53 43 0.29
54 88 0.59
55 2 0.01
ACGTcount: A:0.42, C:0.21, G:0.09, T:0.28
Consensus pattern (53 bp):
AAAATTACAAAAATACCCCTAGTTTATAAAATTACCAAAATACCCTGATTTGT
Found at i:74735381 original size:81 final size:80
Alignment explanation
Indices: 74735242--74735394 Score: 200
Period size: 81 Copynumber: 1.9 Consensus size: 80
74735232 CCCTCGATCA
* * **
74735242 GTAAAATTACCAAAATACCCTGGTCTATAAAATTGCTAAAATACCCCTGGTTTGTAAAATTACAA
1 GTAAAATTACCAAAATACCCTGGTCTATAAAATTACCAAAATACCCCTAATTTGTAAAATTACAA
74735307 AAATACCCCTAGTTT
66 AAATACCCCTAGTTT
* * * *
74735322 GTAAAATTACCAAAATACCACTGGTTTGTGAAATTACCGAAATA-CCCTCAATTTGTAAAATTAC
1 GTAAAATTACCAAAATACC-CTGGTCTATAAAATTACCAAAATACCCCT-AATTTGTAAAATTAC
*
74735386 CAAAATACC
64 AAAAATACC
74735395 TCTGATTTAC
Statistics
Matches: 62, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
80 23 0.37
81 39 0.63
ACGTcount: A:0.41, C:0.20, G:0.10, T:0.29
Consensus pattern (80 bp):
GTAAAATTACCAAAATACCCTGGTCTATAAAATTACCAAAATACCCCTAATTTGTAAAATTACAA
AAATACCCCTAGTTT
Found at i:74735409 original size:81 final size:80
Alignment explanation
Indices: 74735244--74735423 Score: 195
Period size: 81 Copynumber: 2.2 Consensus size: 80
74735234 CTCGATCAGT
* * **
74735244 AAAATTACCAAAATACCCTGGTCTATAAAATTGCTAAAATACCCCTGGTTTGTAAAATTACAAAA
1 AAAATTACCAAAATACCCTGGTCTATAAAATTACCAAAATACCCCTAATTTGTAAAATTACAAAA
**
74735309 ATACCCCTAGTTTGT
66 ATACCCCTAGTTTAC
* * * * *
74735324 AAAATTACCAAAATACCACTGGTTTGTGAAATTACCGAAATA-CCCTCAATTTGTAAAATTACCA
1 AAAATTACCAAAATACC-CTGGTCTATAAAATTACCAAAATACCCCT-AATTTGTAAAATTACAA
*
74735388 AAATACCTCT-GATTTAC
64 AAATACCCCTAG-TTTAC
74735405 AAAATTA-CAGAAATACCCT
1 AAAATTACCA-AAATACCCT
74735424 TGACTTTCTA
Statistics
Matches: 84, Mismatches: 12, Indels: 8
0.81 0.12 0.08
Matches are distributed among these distances:
80 26 0.31
81 58 0.69
ACGTcount: A:0.42, C:0.21, G:0.09, T:0.29
Consensus pattern (80 bp):
AAAATTACCAAAATACCCTGGTCTATAAAATTACCAAAATACCCCTAATTTGTAAAATTACAAAA
ATACCCCTAGTTTAC
Found at i:74735473 original size:27 final size:27
Alignment explanation
Indices: 74735186--74735485 Score: 166
Period size: 27 Copynumber: 11.1 Consensus size: 27
74735176 TTACCATCGA
74735186 TTTACAAAATTACTAAAATACCCTTGG
1 TTTACAAAATTACTAAAATACCCTTGG
* *
74735213 TTTACAAAATTAC-CAAATACCC-TCG
1 TTTACAAAATTACTAAAATACCCTTGG
* * * *
74735238 ATCAGTAAAATTACCAAAATACCC-TGG
1 TTTA-CAAAATTACTAAAATACCCTTGG
* * * *
74735265 TCTATAAAATTGCTAAAATACCCCTGG
1 TTTACAAAATTACTAAAATACCCTTGG
** * * *
74735292 TTTGTAAAATTACAAAAATACCCCTAG
1 TTTACAAAATTACTAAAATACCCTTGG
** *
74735319 TTTGTAAAATTACCAAAATACCAC-TGG
1 TTTACAAAATTACTAAAATACC-CTTGG
*** ** ***
74735346 TTTGTGAAATTACCGAAATACCCTCAA
1 TTTACAAAATTACTAAAATACCCTTGG
** * *
74735373 TTTGTAAAATTACCAAAATA-CCTCTGA
1 TTTACAAAATTACTAAAATACCCT-TGG
*
74735400 TTTACAAAATTAC-AGAAATACCCTTGAC
1 TTTACAAAATTACTA-AAATACCCTTG-G
* *
74735428 TTT-CTAAAAAGTA-TAGAAATACCATTGG
1 TTTAC--AAAATTACTA-AAATACCCTTGG
*
74735456 TTTACAAAATTACTGAAATACCCTTGG
1 TTTACAAAATTACTAAAATACCCTTGG
74735483 TTT
1 TTT
74735486 GTAGATTTAC
Statistics
Matches: 222, Mismatches: 37, Indels: 28
0.77 0.13 0.10
Matches are distributed among these distances:
25 4 0.02
26 38 0.17
27 150 0.68
28 11 0.05
29 19 0.09
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (27 bp):
TTTACAAAATTACTAAAATACCCTTGG
Found at i:74735568 original size:27 final size:27
Alignment explanation
Indices: 74735538--74735598 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 27
74735528 TACACTATTA
74735538 GGTAAAAAGACCGTA-AAGCCCCTGTAG
1 GGTAAAAAGACCGTAGAA-CCCCTGTAG
** * *
74735565 GGTAAAGTGACCGTAGTACCCCTGTAT
1 GGTAAAAAGACCGTAGAACCCCTGTAG
74735592 GGTAAAA
1 GGTAAAA
74735599 TGATGAATAT
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
27 27 0.96
28 1 0.04
ACGTcount: A:0.34, C:0.20, G:0.26, T:0.20
Consensus pattern (27 bp):
GGTAAAAAGACCGTAGAACCCCTGTAG
Found at i:74736497 original size:24 final size:25
Alignment explanation
Indices: 74736411--74736504 Score: 145
Period size: 25 Copynumber: 3.8 Consensus size: 25
74736401 AGGAAGTGCT
* *
74736411 AAAAGGGCTATGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCA
74736436 AAAAGGGCTTTGCCCCAGTTTACCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
* *
74736461 AAAAGGGCCTTGCCCCAGTTTATC-
1 AAAAGGGCTTTGCCCCAGTTTACCA
74736485 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
74736505 ATTAAAAGAT
Statistics
Matches: 64, Mismatches: 5, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
24 19 0.30
25 45 0.70
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCA
Found at i:74736758 original size:31 final size:31
Alignment explanation
Indices: 74736723--74736863 Score: 246
Period size: 31 Copynumber: 4.5 Consensus size: 31
74736713 CATTTACAGT
74736723 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
74736754 AAAGGCTTCGGCCCAGAGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
74736785 GAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
* *
74736816 TAAGGCTTCGGCCCAGTGATATGAGTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
74736847 AAAGGCTTCGGCCCAGT
1 AAAGGCTTCGGCCCAGT
74736864 AACCGTTAAA
Statistics
Matches: 104, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
31 104 1.00
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.27
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:74736916 original size:93 final size:93
Alignment explanation
Indices: 74736724--74736924 Score: 223
Period size: 93 Copynumber: 2.2 Consensus size: 93
74736714 ATTTACAGTA
* * * *
74736724 AAGGCTTCGGCCCAGTGATATGATTTATGAAAAGGCTTCGGCCCAGAGATATGATTTATGAGAAG
1 AAGGCTTCGGCCCAGTGATATGAGTTATGAAAAGGCTTCGGCCCAGAGATACGATTAACGAGAAG
** *
74736789 GCTTCGGCCCAGTGATATGATTTATGAT
66 GCTTCGGCCCAGTGATATGATAGATAAT
*
74736817 AAGGCTTCGGCCCAGTGATATGAGTTATGAAAAGGCTTCGGCCCAGTA-A-CCG-TTAAACGA-A
1 AAGGCTTCGGCCCAGTGATATGAGTTATGAAAAGGCTTCGGCCCAG-AGATACGATT-AACGAGA
*
74736878 AGGCTTCGGCCCAGT-ATATGCTAAGACTAAAT
64 AGGCTTCGGCCCAGTGATATGAT-AGA-T-AAT
* *
74736910 AGGGCTTTGGCCCAG
1 AAGGCTTCGGCCCAG
74736925 ATTGTACTGA
Statistics
Matches: 92, Mismatches: 11, Indels: 10
0.81 0.10 0.09
Matches are distributed among these distances:
90 6 0.07
91 19 0.21
92 5 0.05
93 61 0.66
94 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.25
Consensus pattern (93 bp):
AAGGCTTCGGCCCAGTGATATGAGTTATGAAAAGGCTTCGGCCCAGAGATACGATTAACGAGAAG
GCTTCGGCCCAGTGATATGATAGATAAT
Found at i:74740132 original size:40 final size:40
Alignment explanation
Indices: 74740088--74740188 Score: 132
Period size: 40 Copynumber: 2.5 Consensus size: 40
74740078 GACAAATTAT
* * *
74740088 CTATATGTGGCACTTAATGTGCGATTC-GACATAGCTTTGG
1 CTATATATGGCACTTAATGTGCCATTCGGA-ATAGCTTCGG
* *
74740128 CTATATATGGCACTTAGTGTGCCATTCGGATTAGCTTCGG
1 CTATATATGGCACTTAATGTGCCATTCGGAATAGCTTCGG
*
74740168 CTATATATTGCACTTAATGTG
1 CTATATATGGCACTTAATGTG
74740189 GAAGACTGTA
Statistics
Matches: 53, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
40 51 0.96
41 2 0.04
ACGTcount: A:0.23, C:0.18, G:0.23, T:0.37
Consensus pattern (40 bp):
CTATATATGGCACTTAATGTGCCATTCGGAATAGCTTCGG
Found at i:74744922 original size:29 final size:29
Alignment explanation
Indices: 74744859--74744926 Score: 75
Period size: 29 Copynumber: 2.3 Consensus size: 29
74744849 TAATCAACCG
**
74744859 CGCACACTTAGTGTCATGCACTTTAAACT
1 CGCACACTTAGTACCATGCACTTTAAACT
* **
74744888 CACACACTTAGTACCATGCA-TTTCAAGTT
1 CGCACACTTAGTACCATGCACTTT-AAACT
74744917 CGCACACTTA
1 CGCACACTTA
74744927 CCTATTCCGC
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
28 3 0.09
29 29 0.91
ACGTcount: A:0.29, C:0.29, G:0.12, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTACCATGCACTTTAAACT
Found at i:74745038 original size:174 final size:174
Alignment explanation
Indices: 74744748--74745073 Score: 589
Period size: 174 Copynumber: 1.9 Consensus size: 174
74744738 AACTCAAGGT
* * *
74744748 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
1 ACTTACCTATTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
*
74744813 GAAAATATATATTGAGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGTCATGC
66 GAAAATATATATTGAGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
74744878 ACTTTAAACTCACACACTTAGTACCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTACCATGCATTTCAAGTTCGCAC
74744922 ACTTACCTATTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTATTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
* *
74744987 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
66 GAAAATATATATTGAGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
*
74745052 ACTTTAAACTCGCACACTTAGT
131 ACTTTAAACTCACACACTTAGT
74745074 GCTGTACAAT
Statistics
Matches: 145, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
174 145 1.00
ACGTcount: A:0.32, C:0.24, G:0.14, T:0.30
Consensus pattern (174 bp):
ACTTACCTATTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
GAAAATATATATTGAGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
ACTTTAAACTCACACACTTAGTACCATGCATTTCAAGTTCGCAC
Found at i:74745067 original size:29 final size:30
Alignment explanation
Indices: 74745028--74745106 Score: 110
Period size: 29 Copynumber: 2.7 Consensus size: 30
74745018 CTTAATAATC
74745028 AACCGCGCACACTTAGTGCCATGTAC-TTTA
1 AACC-CGCACACTTAGTGCCATGTACATTTA
*
74745058 AACTCGCACACTTAGTG-C-TGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATTTA
74745087 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
74745107 ATCTCATGAC
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 33 0.77
30 4 0.09
ACGTcount: A:0.29, C:0.30, G:0.15, T:0.25
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATTTA
Found at i:74753039 original size:29 final size:29
Alignment explanation
Indices: 74753005--74753070 Score: 98
Period size: 29 Copynumber: 2.3 Consensus size: 29
74752995 ATCAACCGCG
74753005 CACACTTAGTGCCATGCACTTT-AAATTCA
1 CACACTTAGTGCCATGCA-TTTCAAATTCA
* *
74753034 CACACTTAGTGCCATGCATTTCAAGTTCG
1 CACACTTAGTGCCATGCATTTCAAATTCA
74753063 CACACTTA
1 CACACTTA
74753071 CCTTTTCCGC
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.29, C:0.29, G:0.12, T:0.30
Consensus pattern (29 bp):
CACACTTAGTGCCATGCATTTCAAATTCA
Found at i:74753214 original size:174 final size:174
Alignment explanation
Indices: 74752892--74753221 Score: 561
Period size: 174 Copynumber: 1.9 Consensus size: 174
74752882 AACTCAAGGT
* *
74752892 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
* *
74752957 GAAAATATATATTGAGTTCGCACACATAGTGCTTACTAATCAACCGCGCACACTTAGTGCCATGC
66 GAAAATATATATTGAGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATAC
* **
74753022 ACTTTAAATTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 AATTTAAACCCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
74753066 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
* **
74753131 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCTGTAC
66 GAAAATATATATTGAGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATAC
*
74753196 AATTTAAACCCGCACACTTAGTGCCA
131 AATTTAAACCCACACACTTAGTGCCA
74753222 ATCTCATGAC
Statistics
Matches: 145, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
174 145 1.00
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.30
Consensus pattern (174 bp):
ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
GAAAATATATATTGAGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATAC
AATTTAAACCCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
Found at i:74759536 original size:68 final size:64
Alignment explanation
Indices: 74759426--74759678 Score: 210
Period size: 68 Copynumber: 3.9 Consensus size: 64
74759416 ATACAGATGG
** * * * * *
74759426 TATGTAGCTAGGTCACATGTATAGTGCTGA-GTGCACATCATGT-GTACAAGAGAGCTACAAGAC
1 TATGTAGCTAGGTCACATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGCTAC--GAG
74759489 ATTA
62 A-TA
* *
74759493 TGATGTAGCTAGGTCACATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTGCGGGATA
1 T-ATGTAGCTAGGTCACATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATA
* * * * * *
74759558 TATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGA
1 TATGTAGCTAGGTCACATGGGTGG-TACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGA
74759623 TA
63 TA
* * *
74759625 AACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 TA-TGTAGCTAGGTCACATGGGTGGTACTATGTGTACACCATGTAG-ACAAGAGAGC
74759679 CGAACCATAT
Statistics
Matches: 152, Mismatches: 26, Indels: 20
0.77 0.13 0.10
Matches are distributed among these distances:
62 1 0.01
63 19 0.12
64 22 0.14
65 9 0.06
66 20 0.13
67 32 0.21
68 48 0.32
69 1 0.01
ACGTcount: A:0.30, C:0.17, G:0.29, T:0.24
Consensus pattern (64 bp):
TATGTAGCTAGGTCACATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATA
Found at i:74759582 original size:64 final size:64
Alignment explanation
Indices: 74759495--74759678 Score: 203
Period size: 67 Copynumber: 2.8 Consensus size: 64
74759485 AGACATTATG
* * *
74759495 ATGTAGCTAGGTCACATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTGCGGGATAT
1 ATGTAGCTAGGTCACATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
74759559 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCACATGGGTGG-TACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
74759624 AA
63 AA
* *
74759626 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCACATGGGTGGTACTATGTGTACACCATGTAG-ACAAGAGAGC
74759679 CGAACCATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 22 0.22
65 6 0.06
66 18 0.18
67 30 0.31
68 2 0.02
ACGTcount: A:0.29, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCACATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:74773472 original size:43 final size:41
Alignment explanation
Indices: 74773411--74773497 Score: 129
Period size: 43 Copynumber: 2.1 Consensus size: 41
74773401 CTATTTGGGC
* *
74773411 CTTCGAGCTTAGCAGGCTATAATGCCGGTGAGTTAATATCGGG
1 CTTCGAGCCTAGCAGGCTATAATGCCGGTGA-TTAAT-TCAGG
*
74773454 CTTCGAGCCTAGCAGGCTATAATGCTGGTGATTAATTCAGG
1 CTTCGAGCCTAGCAGGCTATAATGCCGGTGATTAATTCAGG
74773495 CTT
1 CTT
74773498 TAGGCATAGC
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
41 7 0.17
42 5 0.12
43 29 0.71
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.30
Consensus pattern (41 bp):
CTTCGAGCCTAGCAGGCTATAATGCCGGTGATTAATTCAGG
Found at i:74773509 original size:41 final size:43
Alignment explanation
Indices: 74773415--74773524 Score: 120
Period size: 43 Copynumber: 2.6 Consensus size: 43
74773405 TTGGGCCTTC
* * *
74773415 GAGCTTAGCAGGCTATAATGCCGGTGAGTTAATATCGGGCTTC
1 GAGCATAGCAGGCTATAATGCCGGTGAGTTAATATCAGGCTTA
* *
74773458 GAGCCTAGCAGGCTATAATGCTGGTGA-TTAAT-TCAGGCTTTA
1 GAGCATAGCAGGCTATAATGCCGGTGAGTTAATATCAGGC-TTA
* *
74773500 G-GCATAGCAGGC-GTAATGCCAGTGA
1 GAGCATAGCAGGCTATAATGCCGGTGA
74773525 ATGAGTTCAG
Statistics
Matches: 58, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
40 10 0.17
41 15 0.26
42 8 0.14
43 25 0.43
ACGTcount: A:0.25, C:0.18, G:0.30, T:0.26
Consensus pattern (43 bp):
GAGCATAGCAGGCTATAATGCCGGTGAGTTAATATCAGGCTTA
Found at i:74773605 original size:40 final size:40
Alignment explanation
Indices: 74773461--74773606 Score: 93
Period size: 40 Copynumber: 3.6 Consensus size: 40
74773451 GGGCTTCGAG
* * * * **
74773461 CCTAGCAGGCTATAATGCTGGTGATTAATTCAGGCTTTAGG
1 CCTAGCAGGCTA-ATTGCCGGTGATGAATTCAGGATTTAAA
* * * *
74773502 CATAGCAGGCGTAA-TGCCAGTGAATGAGTTCA-GACTTAAA
1 CCTAGCAGGC-TAATTGCCGGTG-ATGAATTCAGGATTTAAA
* * *
74773542 GTCTAGCAGGCT--TCGCGCTGGTGATGAATTCAGGTTTTAAA
1 -CCTAGCAGGCTAATTGC-C-GGTGATGAATTCAGGATTTAAA
74773583 CCTAGCAGGCTAATTGCCGGTGAT
1 CCTAGCAGGCTAATTGCCGGTGAT
74773607 TTGATATAAA
Statistics
Matches: 78, Mismatches: 18, Indels: 19
0.68 0.16 0.17
Matches are distributed among these distances:
39 2 0.03
40 36 0.46
41 35 0.45
42 5 0.06
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.28
Consensus pattern (40 bp):
CCTAGCAGGCTAATTGCCGGTGATGAATTCAGGATTTAAA
Found at i:74774604 original size:27 final size:27
Alignment explanation
Indices: 74774571--74774689 Score: 139
Period size: 27 Copynumber: 4.4 Consensus size: 27
74774561 TGGATAAGTA
**
74774571 GTAGAATTATTGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* * **
74774598 ATAGAATTACCAAAATACCATTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
*
74774625 GTAGAAATACCGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* * *
74774652 GTAGAATTACCGAGATACCCTTGTGGG
1 GTAGAATTACCGAAATACCCCTGTAGG
*
74774679 GTAAAATTACC
1 GTAGAATTACC
74774690 ATTTTGCCCC
Statistics
Matches: 76, Mismatches: 16, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 76 1.00
ACGTcount: A:0.36, C:0.18, G:0.21, T:0.25
Consensus pattern (27 bp):
GTAGAATTACCGAAATACCCCTGTAGG
Found at i:74774700 original size:54 final size:54
Alignment explanation
Indices: 74774582--74774685 Score: 156
Period size: 54 Copynumber: 1.9 Consensus size: 54
74774572 TAGAATTATT
74774582 GAAATACCCCTGTAGGATAGAATTACCAAAATACCATTGTAGGGTAGAAATACC
1 GAAATACCCCTGTAGGATAGAATTACCAAAATACCATTGTAGGGTAGAAATACC
* * * * *
74774636 GAAATACCCCTGTAGGGTAGAATTACCGAGATACCCTTGTGGGGTA-AAAT
1 GAAATACCCCTGTAGGATAGAATTACCAAAATACCATTGTAGGGTAGAAAT
74774686 TACCATTTTG
Statistics
Matches: 45, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
53 4 0.09
54 41 0.91
ACGTcount: A:0.37, C:0.18, G:0.22, T:0.23
Consensus pattern (54 bp):
GAAATACCCCTGTAGGATAGAATTACCAAAATACCATTGTAGGGTAGAAATACC
Found at i:74775384 original size:27 final size:26
Alignment explanation
Indices: 74775340--74775391 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
74775330 CTCGCTGCAA
*
74775340 TCTGGTGGCCTCGCCACATATATCTAT
1 TCTGGTGACCTCGCCACA-ATATCTAT
* *
74775367 TCTGGTGACTTCGTCACAATATCTA
1 TCTGGTGACCTCGCCACAATATCTA
74775392 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.21, C:0.27, G:0.17, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTAT
Found at i:74779010 original size:31 final size:31
Alignment explanation
Indices: 74778969--74779032 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
74778959 CCTTTTCATA
*
74778969 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
**
74779000 TTTCAAATTTCATATTACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
74779031 TT
1 TT
74779033 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCAAATTTCATAACACTGGGCCGAAGCCT
Found at i:74779301 original size:23 final size:23
Alignment explanation
Indices: 74779247--74779365 Score: 211
Period size: 23 Copynumber: 5.1 Consensus size: 23
74779237 CCTAGCCTTT
*
74779247 TTTAATAACTGGGGCAAAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
74779270 TTTTAATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
74779294 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
74779317 TTTAATAACTGGGGCACAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
74779340 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
74779363 TTT
1 TTT
74779366 TCCACTTCCT
Statistics
Matches: 92, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
23 70 0.76
24 22 0.24
ACGTcount: A:0.30, C:0.22, G:0.21, T:0.27
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:74779444 original size:20 final size:20
Alignment explanation
Indices: 74779416--74779482 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
74779406 TTATGATTAC
*
74779416 ATCACGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
74779436 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
74779456 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
74779476 ACCATGT
1 ATCATGT
74779483 TTATCAAAAT
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.33, C:0.22, G:0.12, T:0.33
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:74779547 original size:25 final size:25
Alignment explanation
Indices: 74779519--74779566 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
74779509 TTACATAAAC
* * *
74779519 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
74779544 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
74779567 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:74787134 original size:30 final size:31
Alignment explanation
Indices: 74787082--74787144 Score: 101
Period size: 30 Copynumber: 2.1 Consensus size: 31
74787072 CCTTTTCGTA
*
74787082 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
*
74787113 TTTCAAATTTCAT-ATACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
74787143 TT
1 TT
74787145 ACTATAAACG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
30 18 0.60
31 12 0.40
ACGTcount: A:0.25, C:0.24, G:0.16, T:0.35
Consensus pattern (31 bp):
TTTCAAATTTCATAACACTGGGCCGAAGCCT
Found at i:74787384 original size:22 final size:23
Alignment explanation
Indices: 74787359--74787429 Score: 126
Period size: 23 Copynumber: 3.1 Consensus size: 23
74787349 CCTAGCCTCT
74787359 TTTAATAACT-GGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
74787381 TTTAATAACTGGGGCACAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
74787404 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
74787427 TTT
1 TTT
74787430 TCACTTCCTC
Statistics
Matches: 46, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
22 10 0.22
23 36 0.78
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.28
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:74787501 original size:20 final size:20
Alignment explanation
Indices: 74787478--74787544 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
74787468 TTTATGATAC
74787478 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
74787498 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
74787518 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
74787538 ACCATGT
1 ATCATGT
74787545 TTATCAAAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:74787509 original size:11 final size:11
Alignment explanation
Indices: 74787478--74787533 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
74787468 TTTATGATAC
74787478 ATCATGTGCAT
1 ATCATGTGCAT
*
74787489 ATCA--TACAT
1 ATCATGTGCAT
74787498 ATCATGTGCAT
1 ATCATGTGCAT
*
74787509 ATCA--TACAT
1 ATCATGTGCAT
*
74787518 GTCATGTGCAT
1 ATCATGTGCAT
74787529 ATCAT
1 ATCAT
74787534 ACATACCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:74792001 original size:14 final size:15
Alignment explanation
Indices: 74791984--74792012 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
74791974 TCATGAAAAT
74791984 TTCACACAT-ACAAA
1 TTCACACATAACAAA
74791998 TTCACACATAACAAA
1 TTCACACATAACAAA
74792013 CACAGAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.52, C:0.28, G:0.00, T:0.21
Consensus pattern (15 bp):
TTCACACATAACAAA
Found at i:74795304 original size:20 final size:20
Alignment explanation
Indices: 74795281--74795337 Score: 96
Period size: 20 Copynumber: 2.9 Consensus size: 20
74795271 TAAACATGGT
74795281 ATGTATGATATGCACATGAC
1 ATGTATGATATGCACATGAC
*
74795301 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACATGAC
*
74795321 ATGTATGACATGCACAT
1 ATGTATGATATGCACAT
74795338 TATGTATTTA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 35 1.00
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACATGAC
Found at i:74795417 original size:24 final size:24
Alignment explanation
Indices: 74795390--74795460 Score: 101
Period size: 23 Copynumber: 3.0 Consensus size: 24
74795380 GAGGAAGTGC
74795390 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
74795414 AAAAGGGCTT-TGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
74795437 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
74795461 ATGAAAAAGC
Statistics
Matches: 43, Mismatches: 1, Indels: 5
0.88 0.02 0.10
Matches are distributed among these distances:
23 19 0.44
24 16 0.37
25 8 0.19
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:74795689 original size:31 final size:31
Alignment explanation
Indices: 74795654--74795714 Score: 104
Period size: 31 Copynumber: 2.0 Consensus size: 31
74795644 CGTTTACAGT
74795654 AAAGGCTTCGGCCCAGTAATATGAAATATGG
1 AAAGGCTTCGGCCCAGTAATATGAAATATGG
**
74795685 AAAGGCTTCGGCCCAGTGTTATGAAATATG
1 AAAGGCTTCGGCCCAGTAATATGAAATATG
74795715 AAATGTGAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.33, C:0.16, G:0.26, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGG
Found at i:74801011 original size:36 final size:35
Alignment explanation
Indices: 74800887--74801035 Score: 192
Period size: 35 Copynumber: 4.2 Consensus size: 35
74800877 TATTTGAACC
* *
74800887 TTGTATAATCGGTCATATGTGATGATATATTGAAT
1 TTGTATAATTGGCCATATGTGATGATATATTGAAT
* *
74800922 TGGTAT-ATTCGGCCATATGTGATGGTATATTGAAT
1 TTGTATAATT-GGCCATATGTGATGATATATTGAAT
* *
74800957 TTGTATATTTGGCTATATGTGATGATATATTGAATT
1 TTGTATAATTGGCCATATGTGATGATATATTGAA-T
* *
74800993 TTGTATAATTAGCCATATGTGATGATATATTGAACC
1 TTGTATAATTGGCCATATGTGATGATATATTGAA-T
74801029 TTGTATA
1 TTGTATA
74801036 TTCGATCTTA
Statistics
Matches: 98, Mismatches: 13, Indels: 5
0.84 0.11 0.04
Matches are distributed among these distances:
34 2 0.02
35 55 0.56
36 41 0.42
ACGTcount: A:0.30, C:0.07, G:0.20, T:0.44
Consensus pattern (35 bp):
TTGTATAATTGGCCATATGTGATGATATATTGAAT
Found at i:74801022 original size:71 final size:71
Alignment explanation
Indices: 74800880--74801037 Score: 214
Period size: 71 Copynumber: 2.2 Consensus size: 71
74800870 ATTGAGCTAT
* * *
74800880 TTGAACCTTGTATAATCGG-TCATATGTGATGATATATTGAATTGGTATATTCGGCCATATGTGA
1 TTGAACCTTGTATATTTGGCT-ATATGTGATGATATATTGAATTGGTATATTCAGCCATATGTGA
*
74800944 TGGTATA
65 TGATATA
* *
74800951 TTGAA-TTTGTATATTTGGCTATATGTGATGATATATTGAATTTTGTATAATT-AGCCATATGTG
1 TTGAACCTTGTATATTTGGCTATATGTGATGATATATTGAA-TTGGTAT-ATTCAGCCATATGTG
74801014 ATGATATA
64 ATGATATA
74801022 TTGAACCTTGTATATT
1 TTGAACCTTGTATATT
74801038 CGATCTTATA
Statistics
Matches: 76, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
70 30 0.39
71 34 0.45
72 12 0.16
ACGTcount: A:0.29, C:0.08, G:0.20, T:0.44
Consensus pattern (71 bp):
TTGAACCTTGTATATTTGGCTATATGTGATGATATATTGAATTGGTATATTCAGCCATATGTGAT
GATATA
Found at i:74803410 original size:46 final size:45
Alignment explanation
Indices: 74803316--74803421 Score: 135
Period size: 45 Copynumber: 2.3 Consensus size: 45
74803306 TCTTATGTTT
* *
74803316 CGAGTTCACCTATGGATGCAAGCATCCGAACTCGTTGAGTTGTGTC
1 CGAGTTCA-TTATGGATGCAAGCACCCGAACTCGTTGAGTTGTGTC
*
74803362 CGAGTTCATTATGGATGCGAA-CACCCGAGCTCGTTGAGTTGCAT-TC
1 CGAGTTCATTATGGATGC-AAGCACCCGAACTCGTTGAGTTG--TGTC
74803408 CGAGTTCATTATGG
1 CGAGTTCATTATGG
74803422 GTGAGATTAT
Statistics
Matches: 54, Mismatches: 3, Indels: 6
0.86 0.05 0.10
Matches are distributed among these distances:
45 27 0.50
46 26 0.48
47 1 0.02
ACGTcount: A:0.22, C:0.23, G:0.26, T:0.29
Consensus pattern (45 bp):
CGAGTTCATTATGGATGCAAGCACCCGAACTCGTTGAGTTGTGTC
Found at i:74810950 original size:41 final size:41
Alignment explanation
Indices: 74810902--74810996 Score: 158
Period size: 41 Copynumber: 2.4 Consensus size: 41
74810892 TATTAAAGGA
*
74810902 TAAATAAGTAAAATATGTTAAATGTTAACATATATTATATT
1 TAAATAAGTAAAATATGTTAAATATTAACATATATTATATT
74810943 TAAATAAGTAAAATATGTTAAATATTAACATATATTATATT
1 TAAATAAGTAAAATATGTTAAATATTAACATATATTATATT
*
74810984 AAAAT-A-TAAAATA
1 TAAATAAGTAAAATA
74810997 AAATTATATA
Statistics
Matches: 52, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
39 7 0.13
40 1 0.02
41 44 0.85
ACGTcount: A:0.54, C:0.02, G:0.05, T:0.39
Consensus pattern (41 bp):
TAAATAAGTAAAATATGTTAAATATTAACATATATTATATT
Found at i:74812153 original size:35 final size:35
Alignment explanation
Indices: 74812112--74812260 Score: 199
Period size: 35 Copynumber: 4.2 Consensus size: 35
74812102 TATATGAACC
*
74812112 TTGTATAATCGGTCATATGTGATGATATATTGAAT
1 TTGTATAATCGGCCATATGTGATGATATATTGAAT
* * *
74812147 TGGTATATTCGGCCATATGTGATGGTATATTGAAT
1 TTGTATAATCGGCCATATGTGATGATATATTGAAT
* * *
74812182 TTGTGTATTCGGCTATATGTGATGATATATTGAATT
1 TTGTATAATCGGCCATATGTGATGATATATTGAA-T
* *
74812218 TTGTATAATCAGCCATATGTGATGATATATTGAACC
1 TTGTATAATCGGCCATATGTGATGATATATTGAA-T
74812254 TTGTATA
1 TTGTATA
74812261 TTTGGTCTTA
Statistics
Matches: 99, Mismatches: 14, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
35 61 0.62
36 38 0.38
ACGTcount: A:0.29, C:0.08, G:0.21, T:0.42
Consensus pattern (35 bp):
TTGTATAATCGGCCATATGTGATGATATATTGAAT
Found at i:74812259 original size:70 final size:70
Alignment explanation
Indices: 74812102--74812261 Score: 209
Period size: 71 Copynumber: 2.3 Consensus size: 70
74812092 AAAACTGAGC
* *
74812102 TATA-TGAACCTTGTATAATCGGTCATATGTGATGATATATTGAATTGGTATATTCGGCCATATG
1 TATATTGAACCTTGTAT-ATCGGTCATATGTGATGATATATTGAATTGGTATAATCAGCCATATG
*
74812166 TGATGG
65 TGATGA
* * *
74812172 TATATTGAA-TTTGTGTATTCGG-CTATATGTGATGATATATTGAATTTTGTATAATCAGCCATA
1 TATATTGAACCTTGTATA-TCGGTC-ATATGTGATGATATATTGAA-TTGGTATAATCAGCCATA
74812235 TGTGATGA
63 TGTGATGA
74812243 TATATTGAACCTTGTATAT
1 TATATTGAACCTTGTATAT
74812262 TTGGTCTTAT
Statistics
Matches: 77, Mismatches: 8, Indels: 9
0.82 0.09 0.10
Matches are distributed among these distances:
69 2 0.03
70 33 0.43
71 36 0.47
72 6 0.08
ACGTcount: A:0.29, C:0.09, G:0.20, T:0.42
Consensus pattern (70 bp):
TATATTGAACCTTGTATATCGGTCATATGTGATGATATATTGAATTGGTATAATCAGCCATATGT
GATGA
Found at i:74812293 original size:50 final size:50
Alignment explanation
Indices: 74812239--74812336 Score: 126
Period size: 50 Copynumber: 2.0 Consensus size: 50
74812229 GCCATATGTG
* ** * *
74812239 ATGATATATTGAACCTT-GTATATTTGGTCTTATAGGTATGTACTTATGAA
1 ATGATATAATGAA-CTTGGTATATCCGGTCATATAGGTAAGTACTTATGAA
*
74812289 ATGATATAATGAACTTGGTATATCCGGTCATATAGGTAAGTATTTATG
1 ATGATATAATGAACTTGGTATATCCGGTCATATAGGTAAGTACTTATG
74812337 TGGTGTTCCA
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
49 3 0.07
50 38 0.93
ACGTcount: A:0.32, C:0.08, G:0.19, T:0.41
Consensus pattern (50 bp):
ATGATATAATGAACTTGGTATATCCGGTCATATAGGTAAGTACTTATGAA
Found at i:74827846 original size:46 final size:46
Alignment explanation
Indices: 74827793--74827966 Score: 203
Period size: 46 Copynumber: 3.8 Consensus size: 46
74827783 TGGTTGAGCA
74827793 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAATG
* * *
74827839 TCCGAACTCGTTGAGTTGAGTCCGAGTT--C-GAGAGATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAA-T--G
* *
74827884 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAATG
* * *
74827932 CCCGAGCTCGTTGAGTTGATTCCGAGTTCACTTAT
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAT
74827967 GGGCGGGTTA
Statistics
Matches: 108, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 7 0.06
44 1 0.01
45 1 0.01
46 60 0.56
47 28 0.26
48 1 0.01
49 1 0.01
50 5 0.05
51 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.27, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAATG
Found at i:74827949 original size:93 final size:93
Alignment explanation
Indices: 74827790--74827960 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
74827780 GGATGGTTGA
* *
74827790 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAACGCCCGAACTCGTTGAGT
74827855 TGAGTCCGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
* *
74827883 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAACGCCCGAACTCGTTGAGT
*
74827948 TGATTCCGAGTTC
66 TGAGTCCGAGTTC
74827961 ACTTATGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:74830850 original size:42 final size:41
Alignment explanation
Indices: 74830745--74830831 Score: 115
Period size: 40 Copynumber: 2.1 Consensus size: 41
74830735 ACGACAAATC
* * *
74830745 AACTATATGTGGCACTTAGTGTGC--GATTCGACATAGCTTT
1 AACTATATATGGCACTTAGTGTGCAAGA-CCGAGATAGCTTT
*
74830785 AGCTATATATGGCACTTAGTGTGCAAGACCGAGATAGCTTT
1 AACTATATATGGCACTTAGTGTGCAAGACCGAGATAGCTTT
74830826 AACTAT
1 AACTAT
74830832 GTATATGCAC
Statistics
Matches: 40, Mismatches: 5, Indels: 3
0.83 0.10 0.06
Matches are distributed among these distances:
40 22 0.55
41 16 0.40
42 2 0.05
ACGTcount: A:0.29, C:0.17, G:0.22, T:0.32
Consensus pattern (41 bp):
AACTATATATGGCACTTAGTGTGCAAGACCGAGATAGCTTT
Found at i:74850862 original size:27 final size:27
Alignment explanation
Indices: 74850810--74850863 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 27
74850800 TGTCATGTGA
* *
74850810 AATTGAATGACAAATTATTGTCACATG
1 AATTGAATGACAAATTACTATCACATG
*
74850837 AATTGAATG-CTAAATTACTATTACATG
1 AATTGAATGAC-AAATTACTATCACATG
74850864 GGTTGTATGA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 1 0.04
27 22 0.96
ACGTcount: A:0.41, C:0.11, G:0.13, T:0.35
Consensus pattern (27 bp):
AATTGAATGACAAATTACTATCACATG
Found at i:74851166 original size:49 final size:50
Alignment explanation
Indices: 74851085--74851317 Score: 290
Period size: 49 Copynumber: 4.7 Consensus size: 50
74851075 ATCTATTGTG
*
74851085 AGGTCACATGTGTAGTACTAAGTGCAGACTACTACGTGTACCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
* * ** *
74851135 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCATACCCGATAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAA-TT
* * * * **
74851185 CGATCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
* * *
74851235 AGGTCACGTGTGTAGTACTATGTGCAGGATACTACGTGTACCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
* *
74851285 -GGTCGCATGTGTAGTACTAAGTGTAGGCTACTA
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTA
74851318 TGCGTACCAG
Statistics
Matches: 152, Mismatches: 29, Indels: 5
0.82 0.16 0.03
Matches are distributed among these distances:
49 69 0.45
50 45 0.30
51 38 0.25
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.29
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
Found at i:74863692 original size:16 final size:16
Alignment explanation
Indices: 74863671--74863701 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
74863661 CTTAGATGAT
74863671 CTCATCAATTCAAGAG
1 CTCATCAATTCAAGAG
74863687 CTCATCAATTCAAGA
1 CTCATCAATTCAAGA
74863702 AATTCATTCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.39, C:0.26, G:0.10, T:0.26
Consensus pattern (16 bp):
CTCATCAATTCAAGAG
Found at i:74865327 original size:40 final size:40
Alignment explanation
Indices: 74865124--74865327 Score: 211
Period size: 40 Copynumber: 5.1 Consensus size: 40
74865114 CGGAATTTAA
** *
74865124 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
74865164 CCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
74865204 CCAGATTTAGTAACTCGCACAAATGCCTTCAGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
74865243 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
74865283 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
74865323 CCGGA
1 CCGGA
74865328 CATCATTCAA
Statistics
Matches: 136, Mismatches: 21, Indels: 14
0.80 0.12 0.08
Matches are distributed among these distances:
38 2 0.01
39 32 0.24
40 90 0.66
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:74878901 original size:158 final size:160
Alignment explanation
Indices: 74878687--74879012 Score: 557
Period size: 158 Copynumber: 2.0 Consensus size: 160
74878677 TACTGTTTCC
* *
74878687 TAGGGGTTTACTAATTTATAAGAATTTTTTTTTAAAACTTAGTTAAGTAATTTTGTATTACTGGT
1 TAGGGGTTTACTAATTAATAAGAATATTTTTTTAAAACTTAGTTAAGTAATTTTGTATTACTGGT
*
74878752 TCAAGTTGTAATTAGTAAATTCTCGTATGATTTTTATCCTAATGAATTAGCTAATTTTTCTTCAA
66 TCAAGTTGTAATTAGTAAATTCTCGTATGATTTTTATCCTAATGAATTACCTAATTTTTCTTCAA
74878817 TGATTGAAGAAGAAAAAACCTACAGCAGT-
131 TGATTGAAGAAGAAAAAACCTACAGCAGTA
* * *
74878846 TAGGGGTTTACTAATTAATAA-TATATTTTTTTAAAACTTAGTTAATTAATTTTGTATTATTGGT
1 TAGGGGTTTACTAATTAATAAGAATATTTTTTTAAAACTTAGTTAAGTAATTTTGTATTACTGGT
* *
74878910 TCAAGTTGTAATTAGTAAATTCTCTTATGATTTTTATCCTTATGAATTACCTAATTTTTCTTCAA
66 TCAAGTTGTAATTAGTAAATTCTCGTATGATTTTTATCCTAATGAATTACCTAATTTTTCTTCAA
74878975 TGATTGAAGAAGAAAAAACCTACAGCAGTA
131 TGATTGAAGAAGAAAAAACCTACAGCAGTA
*
74879005 TGGGGGTT
1 TAGGGGTT
74879013 CAGGGGATTT
Statistics
Matches: 157, Mismatches: 9, Indels: 2
0.93 0.05 0.01
Matches are distributed among these distances:
158 130 0.83
159 27 0.17
ACGTcount: A:0.33, C:0.09, G:0.14, T:0.43
Consensus pattern (160 bp):
TAGGGGTTTACTAATTAATAAGAATATTTTTTTAAAACTTAGTTAAGTAATTTTGTATTACTGGT
TCAAGTTGTAATTAGTAAATTCTCGTATGATTTTTATCCTAATGAATTACCTAATTTTTCTTCAA
TGATTGAAGAAGAAAAAACCTACAGCAGTA
Found at i:74881273 original size:34 final size:34
Alignment explanation
Indices: 74881235--74881300 Score: 123
Period size: 34 Copynumber: 1.9 Consensus size: 34
74881225 AGGATGAAGA
74881235 AGTAAACAATTCAAATTCATTTGATTTACTATTG
1 AGTAAACAATTCAAATTCATTTGATTTACTATTG
*
74881269 AGTAAACAATTCAAGTTCATTTGATTTACTAT
1 AGTAAACAATTCAAATTCATTTGATTTACTAT
74881301 AGTGGTGGAA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.38, C:0.12, G:0.09, T:0.41
Consensus pattern (34 bp):
AGTAAACAATTCAAATTCATTTGATTTACTATTG
Done.