Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 228 of 349
Found at i:74887156 original size:14 final size:12
Alignment explanation
Indices: 74887137--74887191 Score: 60
Period size: 12 Copynumber: 4.5 Consensus size: 12
74887127 CATTTCCTCT
74887137 CTCTCCTCCTTTC
1 CTCT-CTCCTTTC
74887150 C-CTCTCCTTCTTC
1 CTCTCTCC-T-TTC
*
74887163 CTCTCTCCTCTC
1 CTCTCTCCTTTC
74887175 CTCTCTCCTTT-
1 CTCTCTCCTTTC
74887186 CTCTCT
1 CTCTCT
74887192 ATGACGTCGC
Statistics
Matches: 37, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
11 10 0.27
12 15 0.41
13 6 0.16
14 6 0.16
ACGTcount: A:0.00, C:0.53, G:0.00, T:0.47
Consensus pattern (12 bp):
CTCTCTCCTTTC
Found at i:74887176 original size:12 final size:12
Alignment explanation
Indices: 74887131--74887183 Score: 56
Period size: 12 Copynumber: 4.3 Consensus size: 12
74887121 ACATTTCATT
74887131 TCCTCT-CTCTCC
1 TCCTCTCCTCT-C
*
74887143 TCCTTTCC-CTC
1 TCCTCTCCTCTC
74887154 TCCTTCTTCCTCTC
1 TCC-TC-TCCTCTC
74887168 TCCTCTCCTCTC
1 TCCTCTCCTCTC
74887180 TCCT
1 TCCT
74887184 TTCTCTCTAT
Statistics
Matches: 35, Mismatches: 2, Indels: 8
0.78 0.04 0.18
Matches are distributed among these distances:
11 4 0.11
12 19 0.54
13 6 0.17
14 6 0.17
ACGTcount: A:0.00, C:0.55, G:0.00, T:0.45
Consensus pattern (12 bp):
TCCTCTCCTCTC
Found at i:74891852 original size:52 final size:52
Alignment explanation
Indices: 74891793--74891891 Score: 155
Period size: 52 Copynumber: 1.9 Consensus size: 52
74891783 ATCAAAATGG
* *
74891793 AAACTAGAAAATTTCGAACTCCTTTG-TAATCAAGCTTATAGGATGTGTATGA
1 AAACTAGAAAATTACAAACTCCTTTGCT-ATCAAGCTTATAGGATGTGTATGA
*
74891845 AAACTAGAAAATTACAAACTCCTTTGCTATCAAGTTTATAGGATGTG
1 AAACTAGAAAATTACAAACTCCTTTGCTATCAAGCTTATAGGATGTG
74891892 CACCTCGAAA
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
52 42 0.98
53 1 0.02
ACGTcount: A:0.37, C:0.14, G:0.16, T:0.32
Consensus pattern (52 bp):
AAACTAGAAAATTACAAACTCCTTTGCTATCAAGCTTATAGGATGTGTATGA
Found at i:74902579 original size:29 final size:28
Alignment explanation
Indices: 74902544--74902821 Score: 150
Period size: 29 Copynumber: 9.5 Consensus size: 28
74902534 TCATCGACCA
**
74902544 ATGAAAAGGGATATCTTCGACTATCGATT
1 ATGAAAAGGGATAT-GACGACTATCGATT
* *
74902573 ATGAAAAGGGATGATGACGA-TCATCAACT
1 ATGAAAAGGGAT-ATGACGACT-ATCGATT
*
74902602 ATGAAAAGGGATAGTGACGACCATCGAATT
1 ATGAAAAGGGATA-TGACGACTATCG-ATT
* *
74902632 ATGAAAAGGGATA-GCTTCGGCTATCGATT
1 ATGAAAAGGGATATG--ACGACTATCGATT
* * * *
74902661 ATGAAAAGGGATGGTGACGACCATCAACT
1 ATGAAAAGGGAT-ATGACGACTATCGATT
* *
74902690 ATGAAAAGGGGATGGTGACGACCATCGAATT
1 ATGAAAA-GGGAT-ATGACGACTATCG-ATT
* * **
74902721 -TTAAAAGGGGATA-GCTTCGACTATTAATT
1 ATGAAAA-GGGATATG--ACGACTATCGATT
* * * * *
74902750 ATGAAAAGGGATGGTGATGACCATCAACT
1 ATGAAAAGGGAT-ATGACGACTATCGATT
* * *
74902779 ATGAAAAGGGATGGTGATGACCATCGAATT
1 ATGAAAAGGGAT-ATGACGACTATCG-ATT
74902809 ATGAAAAGGGATA
1 ATGAAAAGGGATA
74902822 GCTTCGGCTA
Statistics
Matches: 198, Mismatches: 34, Indels: 34
0.74 0.13 0.13
Matches are distributed among these distances:
28 4 0.02
29 112 0.57
30 78 0.39
31 4 0.02
ACGTcount: A:0.37, C:0.13, G:0.27, T:0.23
Consensus pattern (28 bp):
ATGAAAAGGGATATGACGACTATCGATT
Found at i:74902635 original size:59 final size:59
Alignment explanation
Indices: 74902544--74902820 Score: 262
Period size: 59 Copynumber: 4.7 Consensus size: 59
74902534 TCATCGACCA
** * * *
74902544 ATGAAAAGGGATA-TCTTCGACTATCG-ATTATGAAAAGGGATGATGACGATCATCAACT
1 ATGAAAAGGGATAGT-GACGACCATCGAATTATGAAAAGGGATGGTGACGACCATCAACT
* * * * * *
74902602 ATGAAAAGGGATAGTGACGACCATCGAATTATGAAAAGGGATAGCT-TCGGCTATCGATT
1 ATGAAAAGGGATAGTGACGACCATCGAATTATGAAAAGGGAT-GGTGACGACCATCAACT
* *
74902661 ATGAAAAGGGATGGTGACGACCATC-AACTATGAAAAGGGGATGGTGACGACCATCGAA-T
1 ATGAAAAGGGATAGTGACGACCATCGAATTATGAAAA-GGGATGGTGACGACCATC-AACT
* * * * * *
74902720 TTTAAAAGGGGATAGCT-TCGACTAT-TAATTATGAAAAGGGATGGTGATGACCATCAACT
1 ATGAAAA-GGGATAG-TGACGACCATCGAATTATGAAAAGGGATGGTGACGACCATCAACT
* *
74902779 ATGAAAAGGGATGGTGATGACCATCGAATTATGAAAAGGGAT
1 ATGAAAAGGGATAGTGACGACCATCGAATTATGAAAAGGGAT
74902821 AGCTTCGGCT
Statistics
Matches: 176, Mismatches: 31, Indels: 23
0.77 0.13 0.10
Matches are distributed among these distances:
57 1 0.01
58 46 0.26
59 103 0.59
60 25 0.14
61 1 0.01
ACGTcount: A:0.37, C:0.13, G:0.27, T:0.23
Consensus pattern (59 bp):
ATGAAAAGGGATAGTGACGACCATCGAATTATGAAAAGGGATGGTGACGACCATCAACT
Found at i:74902642 original size:88 final size:88
Alignment explanation
Indices: 74902544--74902863 Score: 480
Period size: 88 Copynumber: 3.6 Consensus size: 88
74902534 TCATCGACCA
* * *
74902544 ATGAAAAGGGATATCTTCGACTATCGATTATGAAAAGGGATGATGACGATCATCAACTATGAAAA
1 ATGAAAAGGGATAGCTTCGACTATCGATTATGAAAAGGGATGGTGACGACCATCAACTATGAAAA
*
74902609 GGGATAGTGACGACCATCGAATT
66 GGGATGGTGACGACCATCGAATT
*
74902632 ATGAAAAGGGATAGCTTCGGCTATCGATTATGAAAAGGGATGGTGACGACCATCAACTATGAAAA
1 ATGAAAAGGGATAGCTTCGACTATCGATTATGAAAAGGGATGGTGACGACCATCAACTATGAAAA
74902697 GGGGATGGTGACGACCATCGAATT
66 -GGGATGGTGACGACCATCGAATT
* ** *
74902721 -TTAAAAGGGGATAGCTTCGACTATTAATTATGAAAAGGGATGGTGATGACCATCAACTATGAAA
1 ATGAAAA-GGGATAGCTTCGACTATCGATTATGAAAAGGGATGGTGACGACCATCAACTATGAAA
*
74902785 AGGGATGGTGATGACCATCGAATT
65 AGGGATGGTGACGACCATCGAATT
* ** * *
74902809 ATGAAAAGGGATAGCTTCGGCTATCGATTATGAAGTGCGTTGGTGACGACCATCA
1 ATGAAAAGGGATAGCTTCGACTATCGATTATGAAAAGGGATGGTGACGACCATCA
74902864 TGATTACACT
Statistics
Matches: 209, Mismatches: 20, Indels: 6
0.89 0.09 0.03
Matches are distributed among these distances:
88 128 0.61
89 81 0.39
ACGTcount: A:0.35, C:0.14, G:0.27, T:0.24
Consensus pattern (88 bp):
ATGAAAAGGGATAGCTTCGACTATCGATTATGAAAAGGGATGGTGACGACCATCAACTATGAAAA
GGGATGGTGACGACCATCGAATT
Found at i:74902841 original size:59 final size:59
Alignment explanation
Indices: 74902561--74902862 Score: 242
Period size: 59 Copynumber: 5.1 Consensus size: 59
74902551 GGGATATCTT
* * * * * * *
74902561 CGACTATCG-ATTATGAAAAGGGATGATGACGATCATCAACTATGAAAAGGGATAGTGA
1 CGACCATCGAATTATGAAAAGGGATGCTGTCGACCATCGATTATGAAAAGGGATGGTGA
* *
74902619 CGACCATCGAATTATGAAAAGGGATAGCT-TCGGCTATCGATTATGAAAAGGGATGGTGA
1 CGACCATCGAATTATGAAAAGGGAT-GCTGTCGACCATCGATTATGAAAAGGGATGGTGA
* * * * * *
74902678 CGACCATC-AACTATGAAAAGGGGATGGTGACGACCATCGAATT-TTAAAAGGGGATAGCT-T
1 CGACCATCGAATTATGAAAA-GGGATGCTGTCGACCATCG-ATTATGAAAA-GGGAT-GGTGA
* * * * *
74902738 CGACTAT-TAATTATGAAAAGGGATGGTGAT-GACCATCAACTATGAAAAGGGATGGTGA
1 CGACCATCGAATTATGAAAAGGGATGCTG-TCGACCATCGATTATGAAAAGGGATGGTGA
* * * ** * *
74902796 TGACCATCGAATTATGAAAAGGGATAGCT-TCGGCTATCGATTATGAAGTGCGTTGGTGA
1 CGACCATCGAATTATGAAAAGGGAT-GCTGTCGACCATCGATTATGAAAAGGGATGGTGA
74902855 CGACCATC
1 CGACCATC
74902863 ATGATTACAC
Statistics
Matches: 192, Mismatches: 38, Indels: 27
0.75 0.15 0.11
Matches are distributed among these distances:
57 2 0.01
58 33 0.17
59 127 0.66
60 28 0.15
61 2 0.01
ACGTcount: A:0.35, C:0.14, G:0.27, T:0.24
Consensus pattern (59 bp):
CGACCATCGAATTATGAAAAGGGATGCTGTCGACCATCGATTATGAAAAGGGATGGTGA
Found at i:74906386 original size:42 final size:42
Alignment explanation
Indices: 74906323--74906484 Score: 182
Period size: 42 Copynumber: 3.9 Consensus size: 42
74906313 TCACAATTTT
* * * *
74906323 TGTATCAACGAAGCTCTCTATGTGAGCTTAAGTGATAAGTTG
1 TGTATCAGCGAAGCTCCCTATGCGAGCTTAAGTGATAAGCTG
* *
74906365 TGTATTAGCAAAGCTCCCTATGCGCA-CTTAAGTGATAAGCTG
1 TGTATCAGCGAAGCTCCCTATGCG-AGCTTAAGTGATAAGCTG
* * * * *
74906407 TGTATCAGCGAAGCTCGCTACGTGAGCTTAAGTGACAAGCTA
1 TGTATCAGCGAAGCTCCCTATGCGAGCTTAAGTGATAAGCTG
* * *
74906449 TGTATCAGTGAAGCTCCCCATGCAAGCTTAAGTGAT
1 TGTATCAGCGAAGCTCCCTATGCGAGCTTAAGTGAT
74906485 TGTGCTCCTT
Statistics
Matches: 98, Mismatches: 20, Indels: 4
0.80 0.16 0.03
Matches are distributed among these distances:
41 1 0.01
42 96 0.98
43 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.28
Consensus pattern (42 bp):
TGTATCAGCGAAGCTCCCTATGCGAGCTTAAGTGATAAGCTG
Found at i:74906464 original size:84 final size:84
Alignment explanation
Indices: 74906323--74906484 Score: 209
Period size: 84 Copynumber: 1.9 Consensus size: 84
74906313 TCACAATTTT
* * * * * * *
74906323 TGTATCAACGAAGCTCTCTATGTGAGCTTAAGTGATAAGTTGTGTATTAGCAAAGCTCCCTATGC
1 TGTATCAACGAAGCTCGCTACGTGAGCTTAAGTGACAAGCTATGTATCAGCAAAGCTCCCCATGC
*
74906388 GCA-CTTAAGTGATAAGCTG
66 -AAGCTTAAGTGATAAGCTG
* **
74906407 TGTATCAGCGAAGCTCGCTACGTGAGCTTAAGTGACAAGCTATGTATCAGTGAAGCTCCCCATGC
1 TGTATCAACGAAGCTCGCTACGTGAGCTTAAGTGACAAGCTATGTATCAGCAAAGCTCCCCATGC
74906472 AAGCTTAAGTGAT
66 AAGCTTAAGTGAT
74906485 TGTGCTCCTT
Statistics
Matches: 66, Mismatches: 11, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
83 1 0.02
84 65 0.98
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.28
Consensus pattern (84 bp):
TGTATCAACGAAGCTCGCTACGTGAGCTTAAGTGACAAGCTATGTATCAGCAAAGCTCCCCATGC
AAGCTTAAGTGATAAGCTG
Found at i:74908165 original size:13 final size:13
Alignment explanation
Indices: 74908149--74908174 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
74908139 AAAATGATTT
74908149 TTTGAAAATTTCG
1 TTTGAAAATTTCG
74908162 TTTGAAAATTTCG
1 TTTGAAAATTTCG
74908175 ATGTTTGGGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.08, G:0.15, T:0.46
Consensus pattern (13 bp):
TTTGAAAATTTCG
Found at i:74909330 original size:51 final size:51
Alignment explanation
Indices: 74909225--74909400 Score: 227
Period size: 51 Copynumber: 3.5 Consensus size: 51
74909215 ACTAGTGACT
* * *
74909225 CAAGTGTAGTACTATGTGAAGACCACTT-TG-AGAAGAGATAGC-TTGGTCA
1 CAAGTGTGGTACTATGTGAAGGCCATTTGTGAAGAA-AGATAGCTTTGGTCA
74909274 CAAGTGTGGTACTATGTGAAGGCCATTTGTGAAGAAAGATAGCTTTGGTCA
1 CAAGTGTGGTACTATGTGAAGGCCATTTGTGAAGAAAGATAGCTTTGGTCA
* *
74909325 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAA-AAAGGTAGCTTT-GACTA
1 CAAGTGTGGTACTATGTGAAGGCCA-TTTGTGAAGAAAGATAGCTTTGGTC-A
* *
74909376 CAAGGGTGGTACTATGTGCAGGCCA
1 CAAGTGTGGTACTATGTGAAGGCCA
74909401 CCGGGTATCC
Statistics
Matches: 115, Mismatches: 7, Indels: 8
0.88 0.05 0.06
Matches are distributed among these distances:
49 25 0.22
50 11 0.10
51 71 0.62
52 8 0.07
ACGTcount: A:0.30, C:0.14, G:0.29, T:0.27
Consensus pattern (51 bp):
CAAGTGTGGTACTATGTGAAGGCCATTTGTGAAGAAAGATAGCTTTGGTCA
Found at i:74910331 original size:7 final size:7
Alignment explanation
Indices: 74910319--74910368 Score: 75
Period size: 7 Copynumber: 7.3 Consensus size: 7
74910309 AGTGTCACCT
74910319 TAAACCC
1 TAAACCC
74910326 TAAACCC
1 TAAACCC
**
74910333 TAAACTA
1 TAAACCC
74910340 TAAACCC
1 TAAACCC
74910347 TAAA-CC
1 TAAACCC
74910353 TAAACCC
1 TAAACCC
74910360 TAAACCC
1 TAAACCC
74910367 TA
1 TA
74910369 CAGAGATCGT
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
6 6 0.16
7 32 0.84
ACGTcount: A:0.46, C:0.36, G:0.00, T:0.18
Consensus pattern (7 bp):
TAAACCC
Found at i:74910343 original size:14 final size:13
Alignment explanation
Indices: 74910326--74910364 Score: 60
Period size: 13 Copynumber: 2.9 Consensus size: 13
74910316 CCTTAAACCC
74910326 TAAACCCTAAACTA
1 TAAACCCTAAAC-A
*
74910340 TAAACCCTAAACC
1 TAAACCCTAAACA
74910353 TAAACCCTAAAC
1 TAAACCCTAAAC
74910365 CCTACAGAGA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
13 12 0.50
14 12 0.50
ACGTcount: A:0.49, C:0.33, G:0.00, T:0.18
Consensus pattern (13 bp):
TAAACCCTAAACA
Found at i:74918879 original size:46 final size:46
Alignment explanation
Indices: 74918812--74919028 Score: 208
Period size: 46 Copynumber: 4.7 Consensus size: 46
74918802 GTAACCCCCC
*
74918812 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
* ** ** ** *
74918858 TAAGTGAACTCGGGCTCAACTCGAACTCGGACTCGAGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTC-AACGAGTTCGGGCGTTCGCATCCA
* * * *
74918905 T-AGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CTAG-TTACA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--GCGTTCGCATCCA
* * * *
74918950 TTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 -TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
*
74918996 TAGGTGAACTCGGACTCAACTCAACGAGTTCGG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
74919029 ATGCTCAACC
Statistics
Matches: 134, Mismatches: 29, Indels: 16
0.75 0.16 0.09
Matches are distributed among these distances:
44 1 0.01
45 11 0.08
46 102 0.76
47 20 0.15
ACGTcount: A:0.27, C:0.29, G:0.23, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
Found at i:74918971 original size:92 final size:89
Alignment explanation
Indices: 74918863--74919032 Score: 245
Period size: 92 Copynumber: 1.8 Consensus size: 89
74918853 ATCCATAAGT
*
74918863 GAACTCGGGCTCAACTCGAAC-TCGGACTCGAGTTCGCATCCATA-GTGAACTCGGACTCAACTC
1 GAACTCGGACTCAACTC-AACGTCGGA--C-A-TTCGCATCCATAGGTGAACTCGGACTCAACTC
74918926 AACGAGTTCGGATGCCTAGTTACATTCAC
61 AACGAGTTCGGATGCCTAGTTACATTCAC
74918955 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAGGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAAC--G-TCGGACATTCGCATCCATAGGTGAACTCGGACTCAACTCAA
74919020 CGAGTTCGGATGC
63 CGAGTTCGGATGC
74919033 TCAACCATCC
Statistics
Matches: 72, Mismatches: 1, Indels: 10
0.87 0.01 0.12
Matches are distributed among these distances:
91 15 0.21
92 51 0.71
93 1 0.01
95 5 0.07
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.22
Consensus pattern (89 bp):
GAACTCGGACTCAACTCAACGTCGGACATTCGCATCCATAGGTGAACTCGGACTCAACTCAACGA
GTTCGGATGCCTAGTTACATTCAC
Found at i:74919483 original size:30 final size:30
Alignment explanation
Indices: 74919449--74919508 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
74919439 ATTTAATACG
74919449 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
74919479 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
74919509 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:74926489 original size:29 final size:29
Alignment explanation
Indices: 74926454--74926527 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
74926444 GTTGTGAGAT
* *
74926454 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
74926483 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
74926512 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
74926528 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:74929771 original size:46 final size:46
Alignment explanation
Indices: 74929704--74929968 Score: 218
Period size: 46 Copynumber: 5.7 Consensus size: 46
74929694 AACCCGCCCC
* *
74929704 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTTGCATCCA
* * *
74929750 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C-ATTTGCATCCA
* * * * *
74929798 TCA-CGAACTCGGACTCAACTCAACGAGTTTGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTTGCATCCA
* * * * *
74929843 TAGGTGAACTCGGACTCAGCTCAACGAGTTCGGATGCCTAGTTACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C-ATTTGCATCCA
* * * * * *
74929891 TCA-CGAACTCAGACTCAACTCAACGAGTTTGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTTGCATCCA
*
74929936 TAGGTGAACTCGGACTCAACTCAACGAGTTCGG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
74929969 ATGCTCAACC
Statistics
Matches: 166, Mismatches: 39, Indels: 28
0.71 0.17 0.12
Matches are distributed among these distances:
43 10 0.06
44 2 0.01
45 2 0.01
46 84 0.51
47 52 0.31
48 4 0.02
49 2 0.01
50 10 0.06
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.24
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTTGCATCCA
Found at i:74929816 original size:93 final size:93
Alignment explanation
Indices: 74929709--74929972 Score: 456
Period size: 93 Copynumber: 2.8 Consensus size: 93
74929699 GCCCCTAAGT
* * * * * *
74929709 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGTTTGGACATTCGCATCCATAGGTGAACTCGGACTCAACTCAA
74929774 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
*
74929802 GAACTCGGACTCAACTCAACGAGTTTGGACATTCGCATCCATAGGTGAACTCGGACTCAGCTCAA
1 GAACTCGGACTCAACTCAACGAGTTTGGACATTCGCATCCATAGGTGAACTCGGACTCAACTCAA
74929867 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
*
74929895 GAACTCAGACTCAACTCAACGAGTTTGGACATTCGCATCCATAGGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGTTTGGACATTCGCATCCATAGGTGAACTCGGACTCAACTCAA
74929960 CGAGTTCGGATGC
66 CGAGTTCGGATGC
74929973 TCAACCATCC
Statistics
Matches: 162, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 162 1.00
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.23
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGTTTGGACATTCGCATCCATAGGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:74929823 original size:47 final size:47
Alignment explanation
Indices: 74929755--74929919 Score: 194
Period size: 47 Copynumber: 3.5 Consensus size: 47
74929745 ATCCATAAGT
74929755 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATTTCAC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATTTCAC
* * * ****
74929802 GAACTCGGACTCAACTCAACGAGTTTGGACATTCGC-A--TCCA-TAGGT
1 GAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CTAGTTACATTTCAC
*
74929848 GAACTCGGACTCAGCTCAACGAGTTCGGATGCCTAGTTACATTTCAC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATTTCAC
*
74929895 GAACTCAGACTCAACTCAACGAGTT
1 GAACTCGGACTCAACTCAACGAGTT
74929920 TGGACATTCG
Statistics
Matches: 94, Mismatches: 17, Indels: 14
0.75 0.14 0.11
Matches are distributed among these distances:
43 1 0.01
44 4 0.04
46 30 0.32
47 54 0.57
49 4 0.04
50 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.24
Consensus pattern (47 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:74935139 original size:40 final size:40
Alignment explanation
Indices: 74935084--74935167 Score: 150
Period size: 40 Copynumber: 2.1 Consensus size: 40
74935074 CTAAGAAAGT
74935084 GAATTACGATGTGAACAAGTATCCGATTCAGGTACATTTG
1 GAATTACGATGTGAACAAGTATCCGATTCAGGTACATTTG
* *
74935124 GAATTACGATGTGAACATGTATCTGATTCAGGTACATTTG
1 GAATTACGATGTGAACAAGTATCCGATTCAGGTACATTTG
74935164 GAAT
1 GAAT
74935168 GAGTATCATA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 42 1.00
ACGTcount: A:0.32, C:0.13, G:0.23, T:0.32
Consensus pattern (40 bp):
GAATTACGATGTGAACAAGTATCCGATTCAGGTACATTTG
Found at i:74937525 original size:27 final size:27
Alignment explanation
Indices: 74937483--74937546 Score: 101
Period size: 27 Copynumber: 2.4 Consensus size: 27
74937473 TTAATGTGGG
*
74937483 ACATTCGAGTAGAGATTGTGCTAGATC
1 ACATTCGAGTAGAGATCGTGCTAGATC
*
74937510 ACATTCGAGTATAGATCGTGCTAGATC
1 ACATTCGAGTAGAGATCGTGCTAGATC
*
74937537 ACATTTGAGT
1 ACATTCGAGT
74937547 TTCAGAGCTC
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.30, C:0.16, G:0.23, T:0.31
Consensus pattern (27 bp):
ACATTCGAGTAGAGATCGTGCTAGATC
Found at i:74940015 original size:49 final size:49
Alignment explanation
Indices: 74939905--74940174 Score: 211
Period size: 49 Copynumber: 5.7 Consensus size: 49
74939895 GGGATAAGAT
* * ** * * *
74939905 GCCGATGCCATATCCCAGACATGGTCTTACACTGGCTAGC--ACATCAAA
1 GCCGATGCCATGTCCCAGACA-GGTCTTACACTGACTTTCATATATCGAG
* * *
74939953 GTCGATGCCATGTCCTAAACAGGTCTTACACTGACTTTCATATATCGAG
1 GCCGATGCCATGTCCCAGACAGGTCTTACACTGACTTTCATATATCGAG
* * * *
74940002 GCCGATGCCATGTCCCAGACAGGTCTTACATTGGCTCTCATCTATCG-G
1 GCCGATGCCATGTCCCAGACAGGTCTTACACTGACTTTCATATATCGAG
* * * * * *
74940050 TGTCAATGCCATGTCCCAGACAGGTCTTACACTGGC--ACACA-A-C-AA
1 -GCCGATGCCATGTCCCAGACAGGTCTTACACTGACTTTCATATATCGAG
* *
74940095 GCTGATGCCATGTCCCAGACAGGTCTTACACT-AGCTTGT-ATATCTCGAG
1 GCCGATGCCATGTCCCAGACAGGTCTTACACTGA-CTT-TCATATATCGAG
* *
74940144 GCCGATG-CATGTCCCAGATATGTCTTACACT
1 GCCGATGCCATGTCCCAGACAGGTCTTACACT
74940175 AGCTCTCGTC
Statistics
Matches: 176, Mismatches: 35, Indels: 22
0.76 0.15 0.09
Matches are distributed among these distances:
44 30 0.17
45 1 0.01
46 3 0.02
47 17 0.10
48 41 0.23
49 84 0.48
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.26
Consensus pattern (49 bp):
GCCGATGCCATGTCCCAGACAGGTCTTACACTGACTTTCATATATCGAG
Found at i:74940077 original size:98 final size:91
Alignment explanation
Indices: 74939905--74940126 Score: 237
Period size: 98 Copynumber: 2.4 Consensus size: 91
74939895 GGGATAAGAT
* * *
74939905 GCCGATGCCATATCCCAGACATGGTCTTACACTGGCTAGCACATCAAAGTCGATGCCATGTCCTA
1 GCCGATGCCATGTCCCAGACA-GGTCTTACACTGGCTAGCACATCAAAGTCAATGCCATGTCCCA
* * *
74939970 AACAGGTCTTACACTGACTTTCATATATCGAG
65 AACAGGTCTTACACTGAC--ACACA-A-C-AA
* ** ***
74940002 GCCGATGCCATGTCCCAGACAGGTCTTACATTGGCTCTCATCTATCGGTGTCAATGCCATGTCCC
1 GCCGATGCCATGTCCCAGACAGGTCTTACACTGGCTAGCA-C-ATCAAAGTCAATGCCATGTCCC
* *
74940067 AGACAGGTCTTACACTGGCACACAACAA
64 AAACAGGTCTTACACTGACACACAACAA
*
74940095 GCTGATGCCATGTCCCAGACAGGTCTTACACT
1 GCCGATGCCATGTCCCAGACAGGTCTTACACT
74940127 AGCTTGTATA
Statistics
Matches: 107, Mismatches: 16, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
93 31 0.29
94 1 0.01
95 1 0.01
96 19 0.18
97 21 0.20
98 34 0.32
ACGTcount: A:0.26, C:0.30, G:0.20, T:0.25
Consensus pattern (91 bp):
GCCGATGCCATGTCCCAGACAGGTCTTACACTGGCTAGCACATCAAAGTCAATGCCATGTCCCAA
ACAGGTCTTACACTGACACACAACAA
Found at i:74940213 original size:46 final size:48
Alignment explanation
Indices: 74940059--74940218 Score: 145
Period size: 46 Copynumber: 3.5 Consensus size: 48
74940049 GTGTCAATGC
* * * *
74940059 CATGTCCCAGACAGGTCTTACACTGGC-AC-ACA--ACAA-GCTGATG
1 CATGTCCCAGACATGTCTTACACTAGCTTCTACATCTCAAGGCTGATG
* * * * *
74940102 CCATGTCCCAGACAGGTCTTACACTAGCTTGTATATCTCGAGGCCGATG
1 -CATGTCCCAGACATGTCTTACACTAGCTTCTACATCTCAAGGCTGATG
* * * *
74940151 CATGTCCCAGATATGTCTTACACTAGC-TCT-CGTCTTAATGCTGATG
1 CATGTCCCAGACATGTCTTACACTAGCTTCTACATCTCAAGGCTGATG
74940197 CATGTCCCAGACATGTCTTACA
1 CATGTCCCAGACATGTCTTACA
74940219 TTGGCTCTTA
Statistics
Matches: 94, Mismatches: 17, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
44 26 0.28
46 33 0.35
47 2 0.02
48 27 0.29
49 6 0.06
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (48 bp):
CATGTCCCAGACATGTCTTACACTAGCTTCTACATCTCAAGGCTGATG
Found at i:74940239 original size:92 final size:95
Alignment explanation
Indices: 74940005--74940266 Score: 245
Period size: 92 Copynumber: 2.8 Consensus size: 95
74939995 TATCGAGGCC
* * * * * *
74940005 GATGCCATGTCCCAGACAGGTCTTACATTGGCTCT-CATCTATCG-GTGTCAATGCCATGTCCCA
1 GATGCCATGTCCCAGACAGGTCTTACACTAGCT-TGTATATATCGAG-GCCGATG-CATGTCCCA
* * * * **
74940068 GACAGGTCTTACACTGGCACACAAC--AA-GCT
63 GACATGTCTTACACTAGCTCTCGTCTTAATGCT
* *
74940098 GATGCCATGTCCCAGACAGGTCTTACACTAGCTTGTATATCTCGAGGCCGATGCATGTCCCAGAT
1 GATGCCATGTCCCAGACAGGTCTTACACTAGCTTGTATATATCGAGGCCGATGCATGTCCCAGAC
74940163 ATGTCTTACACTAGCTCTCGTCTTAATGCT
66 ATGTCTTACACTAGCTCTCGTCTTAATGCT
* * * * * *
74940193 GATG-CATGTCCCAGACATGTCTTACATTGGCTCT-TATA-AT-GTGGCCGTTGCATGTCCTAGA
1 GATGCCATGTCCCAGACAGGTCTTACACTAGCT-TGTATATATCGAGGCCGATGCATGTCCCAGA
74940254 CATGTCTTACACT
65 CATGTCTTACACT
74940267 GGCAGACATA
Statistics
Matches: 141, Mismatches: 22, Indels: 13
0.80 0.12 0.07
Matches are distributed among these distances:
92 58 0.41
93 43 0.30
94 32 0.23
95 8 0.06
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.29
Consensus pattern (95 bp):
GATGCCATGTCCCAGACAGGTCTTACACTAGCTTGTATATATCGAGGCCGATGCATGTCCCAGAC
ATGTCTTACACTAGCTCTCGTCTTAATGCT
Found at i:74942118 original size:53 final size:51
Alignment explanation
Indices: 74941960--74942142 Score: 181
Period size: 53 Copynumber: 3.4 Consensus size: 51
74941950 ATTAGGGTTT
*
74941960 AAGGATACCATGTAAGACCATGCCAAGGCATGGCAACTGGTAATGTTTC-TAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGGCATGGC-A-TTGT-A-G-TTCATAAGGC
* * * **
74942015 AAGGATATCATGTAAGACCATGTCAAGACATGGCATTGATAAATCTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGGCATGGCATTG-TAGTTC-ATAAGGC
* *
74942068 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCTTTAGTGAGTTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGGCATGGCATT-GT-AGTTCATAAGGC
*
74942121 AAGGATACCATGTACGACCATG
1 AAGGATACCATGTAAGACCATG
74942143 TTGAGACATG
Statistics
Matches: 106, Mismatches: 15, Indels: 16
0.77 0.11 0.12
Matches are distributed among these distances:
51 2 0.02
52 4 0.04
53 59 0.56
54 10 0.09
55 31 0.29
ACGTcount: A:0.34, C:0.19, G:0.24, T:0.22
Consensus pattern (51 bp):
AAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGTAGTTCATAAGGC
Found at i:74942262 original size:29 final size:29
Alignment explanation
Indices: 74942230--74942293 Score: 101
Period size: 29 Copynumber: 2.2 Consensus size: 29
74942220 TCAAGGTAAC
*
74942230 GTAAGGTAAGACGAGTTACACTAAAAACG
1 GTAAGATAAGACGAGTTACACTAAAAACG
* *
74942259 GTAAGATAAGATGAGTTACACTAAAAAGG
1 GTAAGATAAGACGAGTTACACTAAAAACG
74942288 GTAAGA
1 GTAAGA
74942294 CAAGTTCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.47, C:0.09, G:0.25, T:0.19
Consensus pattern (29 bp):
GTAAGATAAGACGAGTTACACTAAAAACG
Found at i:74943978 original size:93 final size:93
Alignment explanation
Indices: 74943871--74944041 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
74943861 GCCCCTAAGT
* *
74943871 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
74943936 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
74943964 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
74944029 CGAGTTCGGATGC
66 CGAGTTCGGATGC
74944042 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:74944038 original size:46 final size:46
Alignment explanation
Indices: 74943866--74944038 Score: 219
Period size: 46 Copynumber: 3.7 Consensus size: 46
74943856 AACCCGCCCC
* * *
74943866 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
*
74943912 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
74943960 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
74944005 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
74944039 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 9, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 61 0.56
47 29 0.27
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.21
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:74944495 original size:30 final size:30
Alignment explanation
Indices: 74944461--74944520 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
74944451 ATTTAATACG
74944461 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
74944491 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
74944521 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:74951508 original size:46 final size:46
Alignment explanation
Indices: 74951441--74951612 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 46
74951431 AACCCGCCCC
*
74951441 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
*
74951487 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCATCCA
* * * *
74951535 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
*
74951580 TAGGTGAACTCGGACTCAACTCAACGAGTTCGG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
74951613 ATGCTCAACC
Statistics
Matches: 107, Mismatches: 10, Indels: 18
0.79 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 1 0.01
46 60 0.56
47 28 0.26
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
Found at i:74951553 original size:93 final size:93
Alignment explanation
Indices: 74951446--74951616 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
74951436 GCCCCTAAGT
* *
74951446 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
74951511 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* *
74951539 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAGGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
74951604 CGAGTTCGGATGC
66 CGAGTTCGGATGC
74951617 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:74952070 original size:30 final size:30
Alignment explanation
Indices: 74952036--74952095 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
74952026 ATTTAATACG
74952036 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
74952066 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
74952096 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:74959379 original size:28 final size:29
Alignment explanation
Indices: 74959347--74959404 Score: 82
Period size: 28 Copynumber: 2.0 Consensus size: 29
74959337 TACAGGCATG
*
74959347 TGGCCCACTAAGCCC-AATCTCATTCATA
1 TGGCCCACTAAGCCCAAATCACATTCATA
* *
74959375 TGGCCCATTAGGCCCAAATCACATTCATA
1 TGGCCCACTAAGCCCAAATCACATTCATA
74959404 T
1 T
74959405 ACATGCTTTC
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
28 13 0.50
29 13 0.50
ACGTcount: A:0.29, C:0.33, G:0.12, T:0.26
Consensus pattern (29 bp):
TGGCCCACTAAGCCCAAATCACATTCATA
Found at i:74959655 original size:16 final size:16
Alignment explanation
Indices: 74959614--74959656 Score: 68
Period size: 16 Copynumber: 2.7 Consensus size: 16
74959604 GTACCCAAAC
74959614 TTTCAGCTTTTCGGCA
1 TTTCAGCTTTTCGGCA
*
74959630 TTTCAACTTTTCGGCA
1 TTTCAGCTTTTCGGCA
*
74959646 TTTCGGCTTTT
1 TTTCAGCTTTT
74959657 GCCTATGTGT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.12, C:0.23, G:0.16, T:0.49
Consensus pattern (16 bp):
TTTCAGCTTTTCGGCA
Found at i:74962142 original size:64 final size:64
Alignment explanation
Indices: 74962061--74962244 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
74962051 AGACATTATG
* * * *
74962061 ATGTAGCTAGGTCGCATGGGTGATACTACGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTAAGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
74962125 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAGGAGAGCTGCGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTAAGT---GTACACCATGTAGACAAGAGAGCTACGAGAT
74962190 AA
63 AA
* *
74962192 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGGTACTAAGTGTACACCATGTAG-ACAAGAGAGC
74962245 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 18 0.18
64 26 0.27
66 22 0.22
67 29 0.30
68 2 0.02
ACGTcount: A:0.29, C:0.18, G:0.31, T:0.22
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTAAGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:74967156 original size:49 final size:48
Alignment explanation
Indices: 74967087--74967396 Score: 484
Period size: 49 Copynumber: 6.5 Consensus size: 48
74967077 ATTCAGCCAA
74967087 GAAAGTG-TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTGTTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
74967134 GAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTGT-TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
*
74967183 GAAAGTG-TATATATGTGATAAGGCCTAATGGTCGATGTGATGAATGT
1 GAAAGTGTTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
74967230 GAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTGT-TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
74967279 GAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTGT-TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
* * * * * * *
74967328 GAAAGTG-TATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGT
1 GAAAGTGTTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
*
74967375 GAAAGTG-TATAAATGTGATAAG
1 GAAAGTGTTATATATGTGATAAG
74967397 TCCCGAAGGG
Statistics
Matches: 247, Mismatches: 12, Indels: 8
0.93 0.04 0.03
Matches are distributed among these distances:
47 105 0.43
49 142 0.57
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.29
Consensus pattern (48 bp):
GAAAGTGTTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
Found at i:74967219 original size:96 final size:95
Alignment explanation
Indices: 74967087--74967396 Score: 496
Period size: 96 Copynumber: 3.2 Consensus size: 95
74967077 ATTCAGCCAA
74967087 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT-TATATATGT
74967152 GATAAGGCCTAATGGCCGATGTGATGAATGT
65 GATAAGGCCTAATGGCCGATGTGATGAATGT
*
74967183 GAAAGTGTATATATGTGATAAGGCCTAATGGTCGATGTGATGAATGTGAAAGTGTGTATATATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT-TATATATGT
74967248 GATAAGGCCTAATGGCCGATGTGATGAATGT
65 GATAAGGCCTAATGGCCGATGTGATGAATGT
74967279 GAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-TATATATG
1 GAAA--GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTTATATATG
* * * * * * *
74967343 TGACAGGGCCGAGTGGCCAACGTGATGGATGT
64 TGATAAGGCCTAATGGCCGATGTGATGAATGT
*
74967375 GAAAGTGTATAAATGTGATAAG
1 GAAAGTGTATATATGTGATAAG
74967397 TCCCGAAGGG
Statistics
Matches: 201, Mismatches: 11, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
94 17 0.08
96 135 0.67
98 49 0.24
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.29
Consensus pattern (95 bp):
GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTTATATATGTG
ATAAGGCCTAATGGCCGATGTGATGAATGT
Found at i:74967368 original size:145 final size:143
Alignment explanation
Indices: 74967087--74967396 Score: 512
Period size: 145 Copynumber: 2.2 Consensus size: 143
74967077 ATTCAGCCAA
74967087 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGT
* * * *
74967152 GATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGTCG
66 GATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCGAATGGCCA
*
74967217 ATGTGATGAATGT
131 ACGTGATGAATGT
*
74967230 GAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATAT
1 GAAA--GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATAT
* *
74967295 GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGC
64 GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCGAATGGC
*
74967360 CAACGTGATGGATGT
129 CAACGTGATGAATGT
*
74967375 GAAAGTGTATAAATGTGATAAG
1 GAAAGTGTATATATGTGATAAG
74967397 TCCCGAAGGG
Statistics
Matches: 155, Mismatches: 10, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
143 21 0.14
145 134 0.86
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.29
Consensus pattern (143 bp):
GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGT
GATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCGAATGGCCA
ACGTGATGAATGT
Found at i:74967571 original size:37 final size:37
Alignment explanation
Indices: 74967515--74967593 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
74967505 CCGAGCTTTA
* * * *
74967515 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCAGGT
*
74967552 AAGACCCGATAACTTCGTGTGGAGATTATGTCCAGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCAGGT
74967589 AAGAC
1 AAGAC
74967594 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCAGGT
Found at i:74969882 original size:64 final size:64
Alignment explanation
Indices: 74969701--74969884 Score: 185
Period size: 64 Copynumber: 2.8 Consensus size: 64
74969691 ATATAGTTCG
* * * *
74969701 GCTCTCTTGTAC-ACATGGTGAACACTTAGTACCACCCATGTGACCTAGC--CAGTTTATCTCAT
1 GCTCTCTTGT-CTACATGGTGTACACTTAGTACCACCCATGCGACCTAGCTACA-TATATCCCAT
74969763 A
64 A
* * * * * * *
74969764 GCGCTCTTGTCTACATGGTATCCTTCACTTGGAACCACGCATGCGACCTAGCTACATATATCCCG
1 GCTCTCTTGTCTACATGG--T-GTACACTTAGTACCACCCATGCGACCTAGCTACATATATCCCA
74969829 TA
63 TA
* *
74969831 GCTCTCTTGTCTACATGGTGTACACATAGTATCACCCATGCGACCTAGCTACAT
1 GCTCTCTTGTCTACATGGTGTACACTTAGTACCACCCATGCGACCTAGCTACAT
74969885 TATAATGTCT
Statistics
Matches: 96, Mismatches: 19, Indels: 11
0.76 0.15 0.09
Matches are distributed among these distances:
62 1 0.01
63 15 0.16
64 28 0.29
65 2 0.02
66 23 0.24
67 25 0.26
68 2 0.02
ACGTcount: A:0.24, C:0.30, G:0.17, T:0.29
Consensus pattern (64 bp):
GCTCTCTTGTCTACATGGTGTACACTTAGTACCACCCATGCGACCTAGCTACATATATCCCATA
Found at i:74970651 original size:30 final size:30
Alignment explanation
Indices: 74970617--74970677 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
74970607 TCCTTAACTC
74970617 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
74970647 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
74970677 A
1 A
74970678 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:74983211 original size:20 final size:20
Alignment explanation
Indices: 74983186--74983257 Score: 135
Period size: 20 Copynumber: 3.6 Consensus size: 20
74983176 ACAGAGAGTT
*
74983186 ACACGGGTGTGTCTCAAGCC
1 ACACGGGCGTGTCTCAAGCC
74983206 ACACGGGCGTGTCTCAAGCC
1 ACACGGGCGTGTCTCAAGCC
74983226 ACACGGGCGTGTCTCAAGCC
1 ACACGGGCGTGTCTCAAGCC
74983246 ACACGGGCGTGT
1 ACACGGGCGTGT
74983258 GCAATCACAC
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
20 51 1.00
ACGTcount: A:0.19, C:0.32, G:0.32, T:0.17
Consensus pattern (20 bp):
ACACGGGCGTGTCTCAAGCC
Found at i:74985419 original size:44 final size:44
Alignment explanation
Indices: 74985353--74985508 Score: 187
Period size: 43 Copynumber: 3.6 Consensus size: 44
74985343 TATGTGTTAT
*
74985353 CGTGTAAGACCACGTCTAGGACGTTGGCATCGACT-TATGATTTA
1 CGTGTAAGACCACGTCTAGGACGTTGGCATCGA-TATTTGATTTA
* * *
74985397 CGTGTAAGACCACGTGTGGGACGTTGGCTTC-ATATTTGATTT-
1 CGTGTAAGACCACGTCTAGGACGTTGGCATCGATATTTGATTTA
* *
74985439 CGTGTAAAACCCCGTCTAGGACAG-TGGCATCGATATTTGA-TTA
1 CGTGTAAGACCACGTCTAGGAC-GTTGGCATCGATATTTGATTTA
* *
74985482 CATGTAAGACCACGTCTGGGACGTTGG
1 CGTGTAAGACCACGTCTAGGACGTTGG
74985509 TATTGTACGA
Statistics
Matches: 94, Mismatches: 13, Indels: 11
0.80 0.11 0.09
Matches are distributed among these distances:
42 28 0.30
43 38 0.40
44 28 0.30
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.29
Consensus pattern (44 bp):
CGTGTAAGACCACGTCTAGGACGTTGGCATCGATATTTGATTTA
Found at i:74987444 original size:27 final size:27
Alignment explanation
Indices: 74987413--74987517 Score: 117
Period size: 27 Copynumber: 3.9 Consensus size: 27
74987403 CTGCCAGAAT
* *
74987413 AGATAATGTGACAGAGTCACCAGATAC
1 AGATAATGTGGCAGAGCCACCAGATAC
*
74987440 AGATAATCGTGGCAGAGCCACCAGA-AT
1 AGATAAT-GTGGCAGAGCCACCAGATAC
74987467 AGATATATGTGGCAGAGCCACCAGAT-C
1 AGATA-ATGTGGCAGAGCCACCAGATAC
*
74987494 AGATAATTATGGC-GTAGCCACCAG
1 AGATAA-TGTGGCAG-AGCCACCAG
74987518 GACGCTTCCT
Statistics
Matches: 68, Mismatches: 5, Indels: 10
0.82 0.06 0.12
Matches are distributed among these distances:
26 2 0.03
27 49 0.72
28 17 0.25
ACGTcount: A:0.36, C:0.21, G:0.25, T:0.18
Consensus pattern (27 bp):
AGATAATGTGGCAGAGCCACCAGATAC
Found at i:74987465 original size:54 final size:54
Alignment explanation
Indices: 74987406--74987517 Score: 156
Period size: 54 Copynumber: 2.1 Consensus size: 54
74987396 AGCATGGCTG
* *
74987406 CCAGAATAGATA-ATGTGACAGAGTCACCAGATACAGATAATCGTGGCAG-AGCCA
1 CCAGAATAGATATATGTGACAGAGCCACCAGAT-CAGATAATCATGGC-GTAGCCA
* *
74987460 CCAGAATAGATATATGTGGCAGAGCCACCAGATCAGATAATTATGGCGTAGCCA
1 CCAGAATAGATATATGTGACAGAGCCACCAGATCAGATAATCATGGCGTAGCCA
74987514 CCAG
1 CCAG
74987518 GACGCTTCCT
Statistics
Matches: 52, Mismatches: 4, Indels: 4
0.87 0.07 0.07
Matches are distributed among these distances:
53 1 0.02
54 33 0.63
55 18 0.35
ACGTcount: A:0.37, C:0.21, G:0.24, T:0.18
Consensus pattern (54 bp):
CCAGAATAGATATATGTGACAGAGCCACCAGATCAGATAATCATGGCGTAGCCA
Found at i:74997876 original size:27 final size:27
Alignment explanation
Indices: 74997844--74997950 Score: 121
Period size: 27 Copynumber: 3.9 Consensus size: 27
74997834 GGCTGCCAGG
* ** *
74997844 ACAGATAATTTGATAGAGTCACCAGAT
1 ACAGATAATGTGGCAGAGCCACCAGAT
74997871 ACAGATAATCGTGGCAGAGCCACCAGA-
1 ACAGATAAT-GTGGCAGAGCCACCAGAT
74997898 ACAGATATATGTGGCAGAGCCACCAGAT
1 ACAGATA-ATGTGGCAGAGCCACCAGAT
74997926 -CAGATAATTGTGGC-GTAGCCACCAG
1 ACAGATAA-TGTGGCAG-AGCCACCAG
74997951 GACGCTTCCT
Statistics
Matches: 71, Mismatches: 4, Indels: 10
0.84 0.05 0.12
Matches are distributed among these distances:
26 2 0.03
27 54 0.76
28 15 0.21
ACGTcount: A:0.36, C:0.21, G:0.24, T:0.19
Consensus pattern (27 bp):
ACAGATAATGTGGCAGAGCCACCAGAT
Found at i:75001556 original size:49 final size:49
Alignment explanation
Indices: 75001479--75001673 Score: 214
Period size: 49 Copynumber: 3.9 Consensus size: 49
75001469 ACTATTGTGA
*
75001479 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * * *
75001528 GGTCGCATGTGTAGTACTAAGTGCAGGCTGCTATGCAT-TCCCA-AAAACTGT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTA--CGTGTACCAGATAA-T-T
* * * * *
75001579 GATCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTAGCAGATTATT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * *
75001628 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
75001674 GCTTCGGCTA
Statistics
Matches: 116, Mismatches: 24, Indels: 12
0.76 0.16 0.08
Matches are distributed among these distances:
49 75 0.65
50 8 0.07
51 33 0.28
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.29
Consensus pattern (49 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:75001662 original size:100 final size:100
Alignment explanation
Indices: 75001481--75001663 Score: 312
Period size: 100 Copynumber: 1.8 Consensus size: 100
75001471 TATTGTGAGG
*
75001481 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACT
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACT
*
75001546 AAGTGCAGGCTGCTATGCATTCCCAAAAACTGTGA
66 AAGTGCAGGCTACTATGCATTCCCAAAAACTGTGA
* * * *
75001581 TCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTAGCAGATTATTGGTCGCATGTGTAGTACT
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACT
75001646 AAGTGCAGGCTACTATGC
66 AAGTGCAGGCTACTATGC
75001664 GTACCAGATA
Statistics
Matches: 77, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
100 77 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.30
Consensus pattern (100 bp):
TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACT
AAGTGCAGGCTACTATGCATTCCCAAAAACTGTGA
Found at i:75003482 original size:29 final size:28
Alignment explanation
Indices: 75003419--75003533 Score: 124
Period size: 29 Copynumber: 4.0 Consensus size: 28
75003409 TTCACATACC
* * * * *
75003419 TGTATCTGACCCATTAAGCCCAATCATA
1 TGTATATGGCCCATTAGGCCAAATCACA
*
75003447 T-TCATATGGCCCATTAGGTCCAAATCACC
1 TGT-ATATGGCCCATTAGG-CCAAATCACA
75003476 TGTATATGGCCCATTAGGCCCAAATCACA
1 TGTATATGGCCCATTAGG-CCAAATCACA
* *
75003505 TTTATATGGCCCATTAGGCCCAATCACA
1 TGTATATGGCCCATTAGGCCAAATCACA
75003533 T
1 T
75003534 TCATATTCAT
Statistics
Matches: 74, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
27 1 0.01
28 23 0.31
29 49 0.66
30 1 0.01
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.28
Consensus pattern (28 bp):
TGTATATGGCCCATTAGGCCAAATCACA
Found at i:75003489 original size:57 final size:57
Alignment explanation
Indices: 75003416--75003531 Score: 162
Period size: 57 Copynumber: 2.0 Consensus size: 57
75003406 AATTTCACAT
* *
75003416 ACCTGTATCTGACCCATTAAGCCC-AATCATATTCATATGGCCCATTAGGTCCAAATC
1 ACCTGTATATGACCCATTAAGCCCAAATCACATTCATATGGCCCATTAGG-CCAAATC
* * * *
75003473 ACCTGTATATGGCCCATTAGGCCCAAATCACATTTATATGGCCCATTAGGCCCAATC
1 ACCTGTATATGACCCATTAAGCCCAAATCACATTCATATGGCCCATTAGGCCAAATC
75003530 AC
1 AC
75003532 ATTCATATTC
Statistics
Matches: 52, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
57 29 0.56
58 23 0.44
ACGTcount: A:0.29, C:0.30, G:0.14, T:0.27
Consensus pattern (57 bp):
ACCTGTATATGACCCATTAAGCCCAAATCACATTCATATGGCCCATTAGGCCAAATC
Found at i:75003793 original size:16 final size:16
Alignment explanation
Indices: 75003754--75003808 Score: 56
Period size: 16 Copynumber: 3.4 Consensus size: 16
75003744 CCAAACTTTT
*
75003754 AGCTTTTTGGCATTTC
1 AGCTTTTCGGCATTTC
* *
75003770 AGCATTTCGGCATTTT
1 AGCTTTTCGGCATTTC
* *
75003786 GGCTTTTCGACATTTC
1 AGCTTTTCGGCATTTC
*
75003802 GGCTTTT
1 AGCTTTT
75003809 ACCGATACAT
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
16 32 1.00
ACGTcount: A:0.13, C:0.20, G:0.20, T:0.47
Consensus pattern (16 bp):
AGCTTTTCGGCATTTC
Found at i:75003793 original size:24 final size:23
Alignment explanation
Indices: 75003758--75003808 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 23
75003748 ACTTTTAGCT
75003758 TTTTGGCATTTC-AGCATTTCGGC
1 TTTTGGCATTTCGA-CATTTCGGC
*
75003781 ATTTTGGCTTTTCGACATTTCGGC
1 -TTTTGGCATTTCGACATTTCGGC
75003805 TTTT
1 TTTT
75003809 ACCGATACAT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
23 4 0.16
24 20 0.80
25 1 0.04
ACGTcount: A:0.12, C:0.20, G:0.20, T:0.49
Consensus pattern (23 bp):
TTTTGGCATTTCGACATTTCGGC
Found at i:75012271 original size:18 final size:18
Alignment explanation
Indices: 75012248--75012286 Score: 78
Period size: 18 Copynumber: 2.2 Consensus size: 18
75012238 CTATCAAACT
75012248 AATCTTTTGGGTATAGTG
1 AATCTTTTGGGTATAGTG
75012266 AATCTTTTGGGTATAGTG
1 AATCTTTTGGGTATAGTG
75012284 AAT
1 AAT
75012287 TCAGTATTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.26, C:0.05, G:0.26, T:0.44
Consensus pattern (18 bp):
AATCTTTTGGGTATAGTG
Found at i:75017404 original size:68 final size:67
Alignment explanation
Indices: 75017332--75017481 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
75017322 CATCATGTGT
* * * *
75017332 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
75017394 ATGTAG
62 ATGTAG
** * *
75017400 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
75017465 AG
66 AG
75017467 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
75017482 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:75017437 original size:64 final size:64
Alignment explanation
Indices: 75017356--75017539 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
75017346 AGACATTATG
* *
75017356 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
75017420 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
75017485 AA
63 AA
* * * *
75017487 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
75017540 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:75021785 original size:18 final size:18
Alignment explanation
Indices: 75021762--75021796 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
75021752 CAAGAATAGT
*
75021762 AAGCATCAAGATAGTTTC
1 AAGCATCAAAATAGTTTC
*
75021780 AAGCATGAAAATAGTTT
1 AAGCATCAAAATAGTTT
75021797 GGCATATCAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.43, C:0.11, G:0.17, T:0.29
Consensus pattern (18 bp):
AAGCATCAAAATAGTTTC
Found at i:75022072 original size:13 final size:13
Alignment explanation
Indices: 75022054--75022078 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
75022044 CTATTCGTTT
75022054 GATTTTCTTTTTG
1 GATTTTCTTTTTG
75022067 GATTTTCTTTTT
1 GATTTTCTTTTT
75022079 CTTCTCACTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.08, G:0.12, T:0.72
Consensus pattern (13 bp):
GATTTTCTTTTTG
Found at i:75024280 original size:39 final size:39
Alignment explanation
Indices: 75024208--75024392 Score: 237
Period size: 39 Copynumber: 4.7 Consensus size: 39
75024198 AGAAAATCTT
* * *
75024208 ATTCAGTATAATCAGTAGATAATGCTCGGTTGAGCAAGC
1 ATTCAGTATAATCAATTGATAATGCTCGTTTGAGCAAGC
* * * * *
75024247 ATGCAGTGTAATTAATTGATAATGGTCATTTGAGCAAGC
1 ATTCAGTATAATCAATTGATAATGCTCGTTTGAGCAAGC
* *
75024286 ATTCAGTATAATCAGTGGATAATGCTCGTTTGAGCAAGC
1 ATTCAGTATAATCAATTGATAATGCTCGTTTGAGCAAGC
*
75024325 ATTCAGTATAATCAA-TGAATGATGCTCGTTTGAGCAAGC
1 ATTCAGTATAATCAATTG-ATAATGCTCGTTTGAGCAAGC
* *
75024364 ATTCAGTATAATCAGTGGATAATGCTCGT
1 ATTCAGTATAATCAATTGATAATGCTCGT
75024393 GTAACAGCCC
Statistics
Matches: 123, Mismatches: 21, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
38 1 0.01
39 121 0.98
40 1 0.01
ACGTcount: A:0.32, C:0.14, G:0.22, T:0.31
Consensus pattern (39 bp):
ATTCAGTATAATCAATTGATAATGCTCGTTTGAGCAAGC
Found at i:75024392 original size:78 final size:78
Alignment explanation
Indices: 75024208--75024392 Score: 282
Period size: 78 Copynumber: 2.4 Consensus size: 78
75024198 AGAAAATCTT
* * * * *
75024208 ATTCAGTATAATCAGTAGATAATGCTCGGTTGAGCAAGCATGCAGTGTAATTAATTGATAATGGT
1 ATTCAGTATAATCAGTGGATAATGCTCGTTTGAGCAAGCATGCAGTATAATCAATTGATAATGCT
75024273 CATTTGAGCAAGC
66 CATTTGAGCAAGC
* *
75024286 ATTCAGTATAATCAGTGGATAATGCTCGTTTGAGCAAGCATTCAGTATAATCAA-TGAATGATGC
1 ATTCAGTATAATCAGTGGATAATGCTCGTTTGAGCAAGCATGCAGTATAATCAATTG-ATAATGC
*
75024350 TCGTTTGAGCAAGC
65 TCATTTGAGCAAGC
75024364 ATTCAGTATAATCAGTGGATAATGCTCGT
1 ATTCAGTATAATCAGTGGATAATGCTCGT
75024393 GTAACAGCCC
Statistics
Matches: 98, Mismatches: 8, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
77 2 0.02
78 96 0.98
ACGTcount: A:0.32, C:0.14, G:0.22, T:0.31
Consensus pattern (78 bp):
ATTCAGTATAATCAGTGGATAATGCTCGTTTGAGCAAGCATGCAGTATAATCAATTGATAATGCT
CATTTGAGCAAGC
Found at i:75035304 original size:42 final size:42
Alignment explanation
Indices: 75035197--75035316 Score: 145
Period size: 44 Copynumber: 2.8 Consensus size: 42
75035187 TCAATATGTC
* * *
75035197 ATTTTGTGTAAGACCACGTCTGGGACGTTGGCATAGATTTGAG
1 ATTTCGTGTAAGACCATGTCTGGGACATTGGCATAGATTT-AG
*
75035240 ATTTACGTGTAAGACCATGTCTGGGACATTGGCATCGTATTT-G
1 ATTT-CGTGTAAGACCATGTCTGGGACATTGGCATAG-ATTTAG
*
75035283 ATTTCGTGTAAGAACC-TGTCTGGGACAGTGGCAT
1 ATTTCGTGTAAG-ACCATGTCTGGGACATTGGCAT
75035317 TGGTATCTGA
Statistics
Matches: 69, Mismatches: 5, Indels: 7
0.85 0.06 0.09
Matches are distributed among these distances:
42 25 0.36
43 12 0.17
44 28 0.41
45 4 0.06
ACGTcount: A:0.23, C:0.16, G:0.28, T:0.33
Consensus pattern (42 bp):
ATTTCGTGTAAGACCATGTCTGGGACATTGGCATAGATTTAG
Found at i:75035358 original size:43 final size:43
Alignment explanation
Indices: 75035202--75035361 Score: 155
Period size: 43 Copynumber: 3.7 Consensus size: 43
75035192 ATGTCATTTT
* * * **
75035202 GTGTAAGACCACGTCTGGGACGTTGGCATAGATTTGAGATTTAC
1 GTGTAAGACCACGTCTGGGACGTTGGCATTGGTATCTGA-TTAC
* * * * *
75035246 GTGTAAGACCATGTCTGGGACATTGGCA-TCGTATTTGATTTC
1 GTGTAAGACCACGTCTGGGACGTTGGCATTGGTATCTGATTAC
*
75035288 GTGTAAGAACC-TGTCTGGGACAG-TGGCATTGGTATCTGATTAC
1 GTGTAAG-ACCACGTCTGGGAC-GTTGGCATTGGTATCTGATTAC
* *
75035331 ATGTAAGACCACGTCTAGGACGTTGGCATTG
1 GTGTAAGACCACGTCTGGGACGTTGGCATTG
75035362 TATGAGTTTT
Statistics
Matches: 95, Mismatches: 16, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
42 29 0.31
43 40 0.42
44 26 0.27
ACGTcount: A:0.24, C:0.17, G:0.29, T:0.31
Consensus pattern (43 bp):
GTGTAAGACCACGTCTGGGACGTTGGCATTGGTATCTGATTAC
Found at i:75057365 original size:11 final size:11
Alignment explanation
Indices: 75057349--75057381 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
75057339 GCGTGTCCCT
75057349 GTTGAGCCCAA
1 GTTGAGCCCAA
75057360 GTTGAGCCCAA
1 GTTGAGCCCAA
*
75057371 GTTGAGTCCAA
1 GTTGAGCCCAA
75057382 TTTAGAAAAG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.21
Consensus pattern (11 bp):
GTTGAGCCCAA
Found at i:75066523 original size:20 final size:20
Alignment explanation
Indices: 75066498--75066543 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
75066488 TTCATGCACT
* *
75066498 CATAAAATCATACTATAACA
1 CATAAAATAATACTAAAACA
*
75066518 CATAAAATAATATTAAAACA
1 CATAAAATAATACTAAAACA
75066538 -ATAAAA
1 CATAAAA
75066544 AGAATTTCTC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
19 6 0.26
20 17 0.74
ACGTcount: A:0.63, C:0.13, G:0.00, T:0.24
Consensus pattern (20 bp):
CATAAAATAATACTAAAACA
Found at i:75079196 original size:42 final size:42
Alignment explanation
Indices: 75079144--75079299 Score: 168
Period size: 42 Copynumber: 3.7 Consensus size: 42
75079134 TACTAAGACT
* *
75079144 GTGTAAGACCATATCTGGGATGTGGCATCAATATGAGACTAC
1 GTGTAAGACCATATCTGGGATATGGCATCGATATGAGACTAC
* ** *
75079186 GTGTAAGACCATATCTAGGATATGGCATCGATATGAGTTTTC
1 GTGTAAGACCATATCTGGGATATGGCATCGATATGAGACTAC
* * * * * *
75079228 TTGTAAGACCATAGCTGGGCTATTGGCATTGATATGAGAGTCCC
1 GTGTAAGACCATATCTGGGATA-TGGCATCGATATGAGACT-AC
**
75079272 AAGTAAGACCATATCTGGGATATGGCAT
1 GTGTAAGACCATATCTGGGATATGGCAT
75079300 TAGTATGGTA
Statistics
Matches: 94, Mismatches: 18, Indels: 3
0.82 0.16 0.03
Matches are distributed among these distances:
42 54 0.57
43 21 0.22
44 19 0.20
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.29
Consensus pattern (42 bp):
GTGTAAGACCATATCTGGGATATGGCATCGATATGAGACTAC
Found at i:75081029 original size:150 final size:150
Alignment explanation
Indices: 75080758--75081063 Score: 576
Period size: 150 Copynumber: 2.0 Consensus size: 150
75080748 ACAGGTTTGG
*
75080758 CACGGCCTAGCACACGGGCGTGTGTGGCCACTTCAAAGGGCACACGGGCTAGACACACAGTCGTG
1 CACGGCCTAGCACACGGGCGTGTGTGGCCACTTCAAAGGGCACACGGGCTACACACACAGTCGTG
* *
75080823 TAGTTGGCCGTGTAACCTAAGCCAGTATGTATGCCCTGTTTTCACACGGCTAGAGACACGGGCGT
66 TAGTTGACCATGTAACCTAAGCCAGTATGTATGCCCTGTTTTCACACGGCTAGAGACACGGGCGT
75080888 GTCTGGATCTGTGTAAGGCA
131 GTCTGGATCTGTGTAAGGCA
*
75080908 CACGGCCTAGCACACGGGCGTGTGTGGCCACTTCAAAGGGCACACGGGCTACACACACGGTCGTG
1 CACGGCCTAGCACACGGGCGTGTGTGGCCACTTCAAAGGGCACACGGGCTACACACACAGTCGTG
75080973 TAGTTGACCATGTAACCTAAGCCAGTATGTATGCCCTGTTTTCACACGGCTAGAGACACGGGCGT
66 TAGTTGACCATGTAACCTAAGCCAGTATGTATGCCCTGTTTTCACACGGCTAGAGACACGGGCGT
75081038 GTCTGGATCTGTGTAAGGCA
131 GTCTGGATCTGTGTAAGGCA
75081058 CACGGC
1 CACGGC
75081064 TTGTTCACAT
Statistics
Matches: 152, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
150 152 1.00
ACGTcount: A:0.22, C:0.27, G:0.30, T:0.21
Consensus pattern (150 bp):
CACGGCCTAGCACACGGGCGTGTGTGGCCACTTCAAAGGGCACACGGGCTACACACACAGTCGTG
TAGTTGACCATGTAACCTAAGCCAGTATGTATGCCCTGTTTTCACACGGCTAGAGACACGGGCGT
GTCTGGATCTGTGTAAGGCA
Found at i:75100829 original size:23 final size:23
Alignment explanation
Indices: 75100803--75100848 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
75100793 AATCCGAGTT
*
75100803 CTTTCTTTCTTGATCTATATGTA
1 CTTTATTTCTTGATCTATATGTA
75100826 CTTTATTTCTTGATCTATATGTA
1 CTTTATTTCTTGATCTATATGTA
75100849 TTCCAAATTA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.20, C:0.15, G:0.09, T:0.57
Consensus pattern (23 bp):
CTTTATTTCTTGATCTATATGTA
Found at i:75102924 original size:21 final size:21
Alignment explanation
Indices: 75102898--75102939 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
75102888 CTTGTGATCT
* * *
75102898 ACTCCCTATTTTGTGACACAA
1 ACTCCCCATGTTGTAACACAA
75102919 ACTCCCCATGTTGTAACACAA
1 ACTCCCCATGTTGTAACACAA
75102940 CAACCAATAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.31, C:0.31, G:0.10, T:0.29
Consensus pattern (21 bp):
ACTCCCCATGTTGTAACACAA
Found at i:75104902 original size:28 final size:28
Alignment explanation
Indices: 75104859--75104973 Score: 99
Period size: 28 Copynumber: 4.1 Consensus size: 28
75104849 TACCTGTATA
* * *
75104859 TATATGGTCCACTAGGCCAAATCTC-TT
1 TATATGGCCCATTAGGCCAAATCACATT
* *
75104886 TCATATGGCCCATTAGGCCCATTCACATT
1 T-ATATGGCCCATTAGGCCAAATCACATT
* *
75104915 TATGTGGCCCATTAGGCCCAAATCATATT
1 TATATGGCCCATTAGG-CCAAATCACATT
* * *
75104944 CATATGG-ACACTAGGCCCAAATCACATT
1 TATATGGCCCATTAGG-CCAAATCACATT
75104972 TA
1 TA
75104974 CAGTCATGCT
Statistics
Matches: 70, Mismatches: 15, Indels: 5
0.78 0.17 0.06
Matches are distributed among these distances:
27 1 0.01
28 52 0.74
29 17 0.24
ACGTcount: A:0.29, C:0.27, G:0.15, T:0.30
Consensus pattern (28 bp):
TATATGGCCCATTAGGCCAAATCACATT
Found at i:75105210 original size:16 final size:16
Alignment explanation
Indices: 75105186--75105236 Score: 57
Period size: 16 Copynumber: 3.2 Consensus size: 16
75105176 GTAGCCAAAC
*
75105186 TTTCAGCTTTTCAACA
1 TTTCGGCTTTTCAACA
*
75105202 TTTCGGCTTTTCAGCA
1 TTTCGGCTTTTCAACA
* * *
75105218 TTTTGGCATTTCAAGA
1 TTTCGGCTTTTCAACA
75105234 TTT
1 TTT
75105237 GCCAGTCTAC
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 29 1.00
ACGTcount: A:0.20, C:0.20, G:0.14, T:0.47
Consensus pattern (16 bp):
TTTCGGCTTTTCAACA
Found at i:75114653 original size:18 final size:18
Alignment explanation
Indices: 75114630--75114666 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
75114620 TAAATAACTT
75114630 AGTTTTGATTACATTTAG
1 AGTTTTGATTACATTTAG
75114648 AGTTTTGATTACATTTAG
1 AGTTTTGATTACATTTAG
75114666 A
1 A
75114667 TCAAGAAAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.30, C:0.05, G:0.16, T:0.49
Consensus pattern (18 bp):
AGTTTTGATTACATTTAG
Found at i:75116617 original size:26 final size:27
Alignment explanation
Indices: 75116579--75116640 Score: 99
Period size: 26 Copynumber: 2.3 Consensus size: 27
75116569 CAATTTGATG
* *
75116579 AAATGACTATTTTGCCCTTATGTGGT-
1 AAATGACTGTTTTGCCCCTATGTGGTA
75116605 AAATGACTGTTTTGCCCCTATGTGGTA
1 AAATGACTGTTTTGCCCCTATGTGGTA
75116632 AAATGACTG
1 AAATGACTG
75116641 AAATGCCGCA
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
26 24 0.73
27 9 0.27
ACGTcount: A:0.26, C:0.16, G:0.21, T:0.37
Consensus pattern (27 bp):
AAATGACTGTTTTGCCCCTATGTGGTA
Found at i:75116647 original size:27 final size:26
Alignment explanation
Indices: 75116591--75116647 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
75116581 ATGACTATTT
* ***
75116591 TGCCCTTATGTGGTAAATGACTGTTT
1 TGCCCCTATGTGGTAAATGACTGAAA
75116617 TGCCCCTATGTGGTAAAATGACTGAAA
1 TGCCCCTATGTGGT-AAATGACTGAAA
75116644 TGCC
1 TGCC
75116648 GCAACATGGT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
26 13 0.50
27 13 0.50
ACGTcount: A:0.25, C:0.19, G:0.23, T:0.33
Consensus pattern (26 bp):
TGCCCCTATGTGGTAAATGACTGAAA
Found at i:75116764 original size:5 final size:5
Alignment explanation
Indices: 75116754--75116787 Score: 68
Period size: 5 Copynumber: 6.8 Consensus size: 5
75116744 ATAAACGTAA
75116754 ATGAC ATGAC ATGAC ATGAC ATGAC ATGAC ATGA
1 ATGAC ATGAC ATGAC ATGAC ATGAC ATGAC ATGA
75116788 TTGTATGTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 29 1.00
ACGTcount: A:0.41, C:0.18, G:0.21, T:0.21
Consensus pattern (5 bp):
ATGAC
Found at i:75125186 original size:27 final size:27
Alignment explanation
Indices: 75125156--75125245 Score: 126
Period size: 27 Copynumber: 3.3 Consensus size: 27
75125146 TAATTGGATG
* * *
75125156 AAATGACTATTTTTCCCTTAGGTGGTA
1 AAATGACTGTTTTGCCCTTATGTGGTA
75125183 AAATGACTGTTTTGCCCTTATGTGGTA
1 AAATGACTGTTTTGCCCTTATGTGGTA
**
75125210 AAATGGTTGTTTTGCCCTTATGTGGTA
1 AAATGACTGTTTTGCCCTTATGTGGTA
*
75125237 AGATGACTG
1 AAATGACTG
75125246 AAACGCCCCA
Statistics
Matches: 55, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 55 1.00
ACGTcount: A:0.23, C:0.13, G:0.23, T:0.40
Consensus pattern (27 bp):
AAATGACTGTTTTGCCCTTATGTGGTA
Found at i:75125644 original size:18 final size:19
Alignment explanation
Indices: 75125621--75125668 Score: 64
Period size: 18 Copynumber: 2.6 Consensus size: 19
75125611 TACTGTTAAA
75125621 ACTGTTACTGCA-CTGATT
1 ACTGTTACTGCATCTGATT
*
75125639 ACTGTTACTG-ATCTGTTT
1 ACTGTTACTGCATCTGATT
*
75125657 ACTGTTCCTGCA
1 ACTGTTACTGCA
75125669 ATGGGTCATG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
17 1 0.04
18 24 0.92
19 1 0.04
ACGTcount: A:0.19, C:0.23, G:0.17, T:0.42
Consensus pattern (19 bp):
ACTGTTACTGCATCTGATT
Found at i:75129128 original size:18 final size:18
Alignment explanation
Indices: 75129105--75129168 Score: 74
Period size: 18 Copynumber: 3.6 Consensus size: 18
75129095 CTGTTAAAAC
75129105 TGTTACTGCACTGATTAT
1 TGTTACTGCACTGATTAT
*
75129123 TGTTACTACACTGATTAT
1 TGTTACTGCACTGATTAT
** * * *
75129141 AATTACTGCTCTGTTTAC
1 TGTTACTGCACTGATTAT
75129159 TGTTACTGCA
1 TGTTACTGCA
75129169 ATGGGCTAAG
Statistics
Matches: 36, Mismatches: 10, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
18 36 1.00
ACGTcount: A:0.23, C:0.19, G:0.14, T:0.44
Consensus pattern (18 bp):
TGTTACTGCACTGATTAT
Found at i:75130741 original size:40 final size:40
Alignment explanation
Indices: 75130674--75130850 Score: 225
Period size: 40 Copynumber: 4.5 Consensus size: 40
75130664 ACCCAAGTAT
*
75130674 CTTCGGGAT-TTAG-CCGGATATAACAACTCGCACAAATGC
1 CTTCGGG-TCTTAGCCCGGATATAGCAACTCGCACAAATGC
75130713 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* * *
75130753 CTTCGGGTCTTAGCCCGGATATAATC-ACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATAT-AGCAACTCGCACAAATGC
* * * *
75130793 CTTCGGGACATAGCCCGGATATAGCAACTCACACGAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* *
75130833 CTTCGGATCTTAGTCCGG
1 CTTCGGGTCTTAGCCCGG
75130851 TTATCATCCG
Statistics
Matches: 119, Mismatches: 15, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
38 1 0.01
39 13 0.11
40 103 0.87
41 2 0.02
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
Found at i:75135964 original size:18 final size:18
Alignment explanation
Indices: 75135941--75135998 Score: 62
Period size: 18 Copynumber: 3.2 Consensus size: 18
75135931 AAACTTTTAA
*
75135941 TGCACTAATTACTATTAC
1 TGCACTAATTACTGTTAC
* *
75135959 TGCACTGATTATTGTTAC
1 TGCACTAATTACTGTTAC
* **
75135977 TGCCCTTTTTACTGTTAC
1 TGCACTAATTACTGTTAC
75135995 TGCA
1 TGCA
75135999 ATAGGCTAAG
Statistics
Matches: 32, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
18 32 1.00
ACGTcount: A:0.22, C:0.22, G:0.12, T:0.43
Consensus pattern (18 bp):
TGCACTAATTACTGTTAC
Found at i:75144021 original size:15 final size:15
Alignment explanation
Indices: 75144002--75144042 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
75143992 ATGACAGAGG
75144002 AATCCAAGATAAAGA
1 AATCCAAGATAAAGA
* * *
75144017 TATCCAAGGTACAGA
1 AATCCAAGATAAAGA
75144032 AATCCAAGATA
1 AATCCAAGATA
75144043 CCATGTCATA
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.51, C:0.17, G:0.15, T:0.17
Consensus pattern (15 bp):
AATCCAAGATAAAGA
Found at i:75150494 original size:15 final size:15
Alignment explanation
Indices: 75150475--75150515 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
75150465 ATGACAGAGG
75150475 AATCCAAGATAAAGA
1 AATCCAAGATAAAGA
* * *
75150490 TATCCAAGGTACAGA
1 AATCCAAGATAAAGA
75150505 AATCCAAGATA
1 AATCCAAGATA
75150516 CCATGTCATA
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.51, C:0.17, G:0.15, T:0.17
Consensus pattern (15 bp):
AATCCAAGATAAAGA
Found at i:75158896 original size:46 final size:46
Alignment explanation
Indices: 75158829--75159004 Score: 200
Period size: 46 Copynumber: 3.8 Consensus size: 46
75158819 TGTAACCCGC
*
75158829 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTC-GGACGTTCGCAT
* * *
75158875 CCATAAGTGAACTTGGACTCAACTCAACGAGTTCGGATACCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGG--A-C--GTTCGCAT
* *
75158925 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
*
75158968 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
75159005 TGCTCAATCA
Statistics
Matches: 109, Mismatches: 11, Indels: 20
0.78 0.08 0.14
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 5 0.05
46 60 0.55
47 27 0.25
48 2 0.02
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
Found at i:75158948 original size:93 final size:93
Alignment explanation
Indices: 75158836--75159005 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
75158826 CGCCCATAAG
* *
75158836 CGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCATAAGTGAACTTGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGCTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
75158900 AACGAGTTCGGATACCTAGTTACATCTCA
65 AACGAGTTCGGATACCTAGTTACATCTCA
*
75158929 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
75158994 ACGAGTTCGGAT
66 ACGAGTTCGGAT
75159006 GCTCAATCAT
Statistics
Matches: 73, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 2 0.03
93 71 0.97
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATACCTAGTTACATCTCA
Found at i:75165120 original size:28 final size:28
Alignment explanation
Indices: 75165057--75165270 Score: 277
Period size: 28 Copynumber: 7.4 Consensus size: 28
75165047 ATATTAAGTC
*
75165057 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
75165084 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
75165112 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
75165140 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
75165168 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
75165196 CGCACACTTAGTGCTACATACTACATAATCAAACT
1 CGCACACTTAGTG---C-TA-T--ATAATCAAACT
* * * *
75165231 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
75165260 CGCACACTTAG
1 CGCACACTTAG
75165271 CGCCCATCTC
Statistics
Matches: 171, Mismatches: 7, Indels: 16
0.88 0.04 0.08
Matches are distributed among these distances:
27 22 0.13
28 103 0.60
29 16 0.09
30 1 0.01
31 2 0.01
32 3 0.02
35 24 0.14
ACGTcount: A:0.35, C:0.29, G:0.11, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:75172230 original size:28 final size:27
Alignment explanation
Indices: 75172173--75172324 Score: 241
Period size: 27 Copynumber: 5.6 Consensus size: 27
75172163 TAAATTGTGC
*
75172173 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
75172200 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
75172228 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
75172255 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
* *
75172283 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
75172310 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
75172325 GACTTAATAT
Statistics
Matches: 119, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
27 66 0.55
28 53 0.45
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGACTATGT
Found at i:75172237 original size:55 final size:55
Alignment explanation
Indices: 75172173--75172324 Score: 259
Period size: 55 Copynumber: 2.8 Consensus size: 55
75172163 TAAATTGTGC
*
75172173 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
*
75172228 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
* * *
75172283 AGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCG
75172325 GACTTAATAT
Statistics
Matches: 92, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
55 92 1.00
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
Found at i:75176610 original size:28 final size:28
Alignment explanation
Indices: 75176543--75176722 Score: 303
Period size: 28 Copynumber: 6.5 Consensus size: 28
75176533 ATATTAAGTC
* *
75176543 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
75176570 --CACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
75176596 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
75176624 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
75176652 CGCGCACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
75176680 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
75176708 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
75176723 GTACAATTTA
Statistics
Matches: 146, Mismatches: 4, Indels: 5
0.94 0.03 0.03
Matches are distributed among these distances:
25 20 0.14
26 4 0.03
28 122 0.84
ACGTcount: A:0.34, C:0.28, G:0.12, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTACATAATCAAACT
Found at i:75182691 original size:40 final size:40
Alignment explanation
Indices: 75182587--75182853 Score: 446
Period size: 40 Copynumber: 6.7 Consensus size: 40
75182577 TGAGCATTGG
75182587 AATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
1 AATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
75182627 AATATATCC-GGCTAAGACCCGAAGGCAATTATGCGAGTT
1 AATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
75182666 AATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
1 AATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
*
75182706 GATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
1 AATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
* * *
75182746 AATATGTCCGGGCTATGACCCGAAGGCAATTATGCGAGAT
1 AATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
* *
75182786 GATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTT
1 AATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
* * *
75182826 GATATGTCCGGGTTAAGACCCGAAGGCA
1 AATATATCCGGGCTAAGACCCGAAGGCA
75182854 CATGTGTTTG
Statistics
Matches: 214, Mismatches: 12, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
39 39 0.18
40 175 0.82
ACGTcount: A:0.31, C:0.20, G:0.26, T:0.22
Consensus pattern (40 bp):
AATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
Found at i:75191135 original size:39 final size:40
Alignment explanation
Indices: 75191040--75191304 Score: 428
Period size: 40 Copynumber: 6.7 Consensus size: 40
75191030 TGAGCATTGG
75191040 AATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
1 AATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
75191080 AATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
1 AATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
75191120 -ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
1 AATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
*
75191159 GATATAT-CGGGCTAAGACCCGAAGGC-ATTATGCGAGTT
1 AATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
* * *
75191197 AATATGTCCGGGCTATGACCCGAAGGCAATTATGCGAGAT
1 AATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
* *
75191237 GATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTT
1 AATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
* * *
75191277 GATATGTCCGGGTTAAGACCCGAAGGCA
1 AATATATCCGGGCTAAGACCCGAAGGCA
75191305 CATGTGTTTG
Statistics
Matches: 211, Mismatches: 11, Indels: 6
0.93 0.05 0.03
Matches are distributed among these distances:
38 17 0.08
39 76 0.36
40 118 0.56
ACGTcount: A:0.31, C:0.20, G:0.27, T:0.22
Consensus pattern (40 bp):
AATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
Found at i:75295998 original size:29 final size:29
Alignment explanation
Indices: 75295939--75296012 Score: 87
Period size: 29 Copynumber: 2.6 Consensus size: 29
75295929 GTTGTGAGAT
* *
75295939 TGGCACTAGGTGTGCGAACTTGAAATGCA
1 TGGCACTAAGTGTGCGAACTTGAAATACA
* *
75295968 TGGCACTAAGTGTGCG-AGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAACTTGAAA-TACA
*
75295997 TGGCACGAAGTGTGCG
1 TGGCACTAAGTGTGCG
75296013 CGGTTGATTA
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
28 6 0.15
29 33 0.85
ACGTcount: A:0.27, C:0.16, G:0.32, T:0.24
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAACTTGAAATACA
Found at i:75297542 original size:41 final size:40
Alignment explanation
Indices: 75297434--75297663 Score: 231
Period size: 41 Copynumber: 5.8 Consensus size: 40
75297424 ATAACCACAA
* * *
75297434 GCAC-AATGGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAAT-GCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
75297474 GCA-AAATG-CTGCGGGTC-TAACCCGGATATATCAAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATC-AACTC
75297512 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAT-ATCAACTC
* * *
75297553 GCACAAATGCCTTCGGGTCTTAGACCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATATCAACTC
* * * *
75297593 GCATAAATGCCTTCGGGACTTAG-CCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATATCAACTC
* **
75297632 GCATAAATGCCTTCGGAACTTAGCCCGGATAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAT
75297664 CATTCAAATG
Statistics
Matches: 170, Mismatches: 12, Indels: 17
0.85 0.06 0.09
Matches are distributed among these distances:
37 13 0.08
38 16 0.09
39 45 0.26
40 44 0.26
41 48 0.28
42 4 0.02
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
Found at i:75297631 original size:39 final size:40
Alignment explanation
Indices: 75297516--75297662 Score: 215
Period size: 39 Copynumber: 3.7 Consensus size: 40
75297506 AAACTCGCAC
* * * *
75297516 AAATGCCTTCGGGTCTTAGCCCGGATATAATCAACTCGCAC
1 AAATGCCTTCGGGACTTAGCCCGGATAAAATC-ACTAGCAT
* *
75297557 AAATGCCTTCGGGTCTTAGACCGGATAAAATCACTAGCAT
1 AAATGCCTTCGGGACTTAGCCCGGATAAAATCACTAGCAT
75297597 AAATGCCTTCGGGACTTAG-CCGGATAAAATCACTAGCAT
1 AAATGCCTTCGGGACTTAGCCCGGATAAAATCACTAGCAT
*
75297636 AAATGCCTTCGGAACTTAGCCCGGATA
1 AAATGCCTTCGGGACTTAGCCCGGATA
75297663 TCATTCAAAT
Statistics
Matches: 99, Mismatches: 6, Indels: 3
0.92 0.06 0.03
Matches are distributed among these distances:
39 38 0.38
40 31 0.31
41 30 0.30
ACGTcount: A:0.31, C:0.25, G:0.20, T:0.24
Consensus pattern (40 bp):
AAATGCCTTCGGGACTTAGCCCGGATAAAATCACTAGCAT
Found at i:75305642 original size:40 final size:40
Alignment explanation
Indices: 75305597--75305828 Score: 281
Period size: 40 Copynumber: 5.8 Consensus size: 40
75305587 ATAACCACAA
* * *
75305597 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATATATCAACTC
*
75305637 GCACAAATGCCTGCGGGTCTTAACCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATATATCAACTC
*
75305677 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATATATCAACTC
* *
75305717 GCACAAATGCCTTCGGGTCTTAGA-CCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTA-ACCCGGAT-ATATCAACTC
* * * * *
75305757 GCATAAATGCCTTCGGGACTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAACCCGGAT-ATATCAACTC
* * *
75305797 GCATAAATGCCTTCGGGACTTAGCCCGGATAT
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAT
75305829 CATTCAAATG
Statistics
Matches: 176, Mismatches: 13, Indels: 7
0.90 0.07 0.04
Matches are distributed among these distances:
39 1 0.01
40 171 0.97
41 4 0.02
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATATATCAACTC
Found at i:75313887 original size:39 final size:39
Alignment explanation
Indices: 75313821--75314049 Score: 268
Period size: 40 Copynumber: 5.8 Consensus size: 39
75313811 ATAACCACAA
* * *
75313821 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATA-CAACTC
*
75313861 GCACAAATGCC-TCGGGTCTTAGCCCGGATATATAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATACAACTC
75313899 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATA-CAACTC
* *
75313939 GCACAAATGCCTTCGGGTCTTAG-CCGGATA-AAATCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATACA--ACTC
* * * *
75313978 GCATAAATGCCTTCGGGACTTAGCCCGGATA-AAATCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATACA--ACTC
* *
75314018 GCATAAATGCCTTCGGGACTTAGCCCGGATAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAT
75314050 CATTCAAATG
Statistics
Matches: 174, Mismatches: 9, Indels: 11
0.90 0.05 0.06
Matches are distributed among these distances:
37 1 0.01
38 17 0.10
39 71 0.41
40 85 0.49
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (39 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATACAACTC
Found at i:75314000 original size:79 final size:80
Alignment explanation
Indices: 75313801--75314048 Score: 308
Period size: 79 Copynumber: 3.1 Consensus size: 80
75313791 TCTTCGGAAT
* * * * * * *
75313801 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
1 TTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCAC
75313865 AAATGCC-TCGGGTC
66 AAATGCCTTCGGGTC
* * *
75313879 TTAGCCCGGAT-ATATAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCAC
1 TTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCAC
75313943 AAATGCCTTCGGGTC
66 AAATGCCTTCGGGTC
* * * *
75313958 TTAG-CCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGGATAAAATC-ACTAGCA
1 TTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATATCAACTCGCA
* *
75314021 TAAATGCCTTCGGGAC
65 CAAATGCCTTCGGGTC
75314037 TTAGCCCGGATA
1 TTAGCCCGGATA
75314049 TCATTCAAAT
Statistics
Matches: 146, Mismatches: 19, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
78 60 0.41
79 75 0.51
80 11 0.08
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.23
Consensus pattern (80 bp):
TTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCAC
AAATGCCTTCGGGTC
Found at i:75330259 original size:40 final size:40
Alignment explanation
Indices: 75330159--75330370 Score: 268
Period size: 40 Copynumber: 5.3 Consensus size: 40
75330149 GCTCCTCGTT
* * * * *
75330159 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
* ** *
75330199 C-AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
*
75330238 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
* *
75330278 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGG-ATTTAGTATCTCGCA
*
75330318 CAAATGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGG-ATTTAGTATCTCGCA
75330358 CAAATGCCTTCGG
1 CAAATGCCTTCGG
75330371 ATCTTAGTCC
Statistics
Matches: 157, Mismatches: 13, Indels: 4
0.90 0.07 0.02
Matches are distributed among these distances:
39 34 0.22
40 119 0.76
41 4 0.03
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
Found at i:75330407 original size:80 final size:80
Alignment explanation
Indices: 75330159--75330416 Score: 242
Period size: 80 Copynumber: 3.2 Consensus size: 80
75330149 GCTCCTCGTT
* * * * * * *
75330159 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-AATGCCTTCGG-GACATAACCCG
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGAG-CTTAACCCG
* * *
75330222 G-ATTTAACAACTCGCA
65 GAATTT-GCATCTAGCA
* *
75330238 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGGGCTTAACCCGG
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGAGCTTAACCCGG
* *
75330303 AATTTGTATCTCGCA
66 AATTTGCATCTAGCA
* * * **
75330318 CAAATGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAACCCGG-ATTTAGTATCTCGCACAAAGGCCTTCGGAGCTTAACCCG
75330382 GATATATT-CA-CTTAGCA
65 GA-AT-TTGCATC-TAGCA
75330399 CAAA-GCCTTCGGGACTTA
1 CAAATGCCTTCGGGACTTA
75330417 GCCCAGACAG
Statistics
Matches: 151, Mismatches: 21, Indels: 13
0.82 0.11 0.07
Matches are distributed among these distances:
79 35 0.23
80 94 0.62
81 20 0.13
82 2 0.01
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.26
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGAGCTTAACCCGG
AATTTGCATCTAGCA
Found at i:75334696 original size:52 final size:50
Alignment explanation
Indices: 75334571--75334707 Score: 159
Period size: 52 Copynumber: 2.7 Consensus size: 50
75334561 GCTATTGAGT
* * **
75334571 ACACATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACCATTTGGT
1 ACACATAGTAGCCTGCACATAGTACTACACATGTGACCTAACCATTTGAA
** * * *
75334621 ACATGTAGTAGCTTTCA-ATTAGTACTACACATGTGACCTAAAACCATTTTAA
1 ACACATAGTAGCCTGCACA-TAGTACTACACATGTGACCT--AACCATTTGAA
75334673 ACACATAGTAGCCTGCACATAGTACTACACATGTG
1 ACACATAGTAGCCTGCACATAGTACTACACATGTG
75334708 TTCTCACAAT
Statistics
Matches: 70, Mismatches: 13, Indels: 6
0.79 0.15 0.07
Matches are distributed among these distances:
50 32 0.46
52 37 0.53
53 1 0.01
ACGTcount: A:0.34, C:0.24, G:0.15, T:0.28
Consensus pattern (50 bp):
ACACATAGTAGCCTGCACATAGTACTACACATGTGACCTAACCATTTGAA
Found at i:75345944 original size:68 final size:66
Alignment explanation
Indices: 75345859--75346056 Score: 172
Period size: 64 Copynumber: 3.0 Consensus size: 66
75345849 AGTGCTGAGT
*
75345859 GCACATCATGT-GTACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACT
1 GCACA-CATGTAG-ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGGGTGATACC
* *
75345923 ATGTGTA
60 AAGTGAA
** * * *
75345930 -CAC-CATGTAGACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGTGTGGTTCCAAGTGA
1 GCACACATGTAGACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGGGTGATACCAAGTGA
75345993 A
66 A
* * * * * *
75345994 GGACACATGTAGACAAGAGAGCTACGAGATAAACTG--GCTAGGTCACATGGGTGGTACTAAGTG
1 GCACACATGTAGACAAGAGAGCTACGACATATA-TGTAGCTAGGTCGCATGGGTGATACCAAGTG
75346057 TTCACCATGT
Statistics
Matches: 108, Mismatches: 15, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
64 28 0.26
65 28 0.26
66 28 0.26
67 2 0.02
68 18 0.17
69 1 0.01
70 3 0.03
ACGTcount: A:0.31, C:0.16, G:0.29, T:0.23
Consensus pattern (66 bp):
GCACACATGTAGACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGGGTGATACCAAGTGA
A
Found at i:75345977 original size:64 final size:64
Alignment explanation
Indices: 75345896--75346078 Score: 210
Period size: 64 Copynumber: 2.8 Consensus size: 64
75345886 AGACATTATG
* * * *
75345896 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTAAGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
75345960 ATGTAGCTAGGTCGCATGTGTGGTTCCAAGTGAAGGACACATGTAGACAAGAGAGCTACGAGATA
1 ATGTAGCTAGGTCGCATGGGTGGTACTAAGTGTA-CAC-CATGTAGACAAGAGAGCTACGAGATA
75346025 A
64 A
* *
75346026 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGGTACTAAGTGTACACCATGTAG-ACAAGAGAGC
75346079 CGAACTATAT
Statistics
Matches: 99, Mismatches: 16, Indels: 9
0.80 0.13 0.07
Matches are distributed among these distances:
62 1 0.01
63 15 0.15
64 30 0.30
65 25 0.25
66 26 0.26
67 2 0.02
ACGTcount: A:0.30, C:0.16, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTAAGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:75356014 original size:14 final size:14
Alignment explanation
Indices: 75355993--75356054 Score: 51
Period size: 14 Copynumber: 4.6 Consensus size: 14
75355983 CAAGCACGTA
75355993 AATA-TTAAATATT
1 AATATTTAAATATT
75356006 AATATTTAAACT-TT
1 AATATTTAAA-TATT
** *
75356020 AAGGTTT-AACATT
1 AATATTTAAATATT
75356033 AA-ATATTAAATATT
1 AATAT-TTAAATATT
75356047 AATATTTA
1 AATATTTA
75356055 TGTGTATAAT
Statistics
Matches: 38, Mismatches: 5, Indels: 11
0.70 0.09 0.20
Matches are distributed among these distances:
12 1 0.03
13 12 0.32
14 22 0.58
15 3 0.08
ACGTcount: A:0.48, C:0.03, G:0.03, T:0.45
Consensus pattern (14 bp):
AATATTTAAATATT
Found at i:75356319 original size:20 final size:19
Alignment explanation
Indices: 75356287--75356325 Score: 60
Period size: 20 Copynumber: 2.0 Consensus size: 19
75356277 TTGATTAAGG
75356287 TTAAGTTAAGTTAATTAAA
1 TTAAGTTAAGTTAATTAAA
*
75356306 TTAAGTTTATGTTAATTAAA
1 TTAAG-TTAAGTTAATTAAA
75356326 CCATGATTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 5 0.28
20 13 0.72
ACGTcount: A:0.44, C:0.00, G:0.10, T:0.46
Consensus pattern (19 bp):
TTAAGTTAAGTTAATTAAA
Found at i:75360127 original size:40 final size:40
Alignment explanation
Indices: 75360071--75360195 Score: 178
Period size: 40 Copynumber: 3.1 Consensus size: 40
75360061 GCTTGTACGA
* *
75360071 GTTTGCACTTCAATGCCTCTATTTACACTTTTGTGCCTCT
1 GTTTGCACTTCAATGCCTCTATTTACACTTTGGTGTCTCT
* * * *
75360111 GTTTGCAGTTCGATGCCTTTGTTTACACTTTGGTGTCTCT
1 GTTTGCACTTCAATGCCTCTATTTACACTTTGGTGTCTCT
* *
75360151 GCTTGCACTTCAATGCCTCTATTTACACTTTGGTGTTTCT
1 GTTTGCACTTCAATGCCTCTATTTACACTTTGGTGTCTCT
75360191 GTTTG
1 GTTTG
75360196 TACTCCAGTG
Statistics
Matches: 72, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 72 1.00
ACGTcount: A:0.13, C:0.23, G:0.18, T:0.46
Consensus pattern (40 bp):
GTTTGCACTTCAATGCCTCTATTTACACTTTGGTGTCTCT
Found at i:75360170 original size:20 final size:20
Alignment explanation
Indices: 75360071--75360180 Score: 76
Period size: 20 Copynumber: 5.5 Consensus size: 20
75360061 GCTTGTACGA
75360071 GTTTGCACTTCAATGCCTCT
1 GTTTGCACTTCAATGCCTCT
* * ***
75360091 ATTTACACTTTTGTGCCTCT
1 GTTTGCACTTCAATGCCTCT
* * *
75360111 GTTTGCAGTTCGATGCCTTT
1 GTTTGCACTTCAATGCCTCT
* *** *
75360131 GTTTACACTTTGGTGTCTCT
1 GTTTGCACTTCAATGCCTCT
*
75360151 GCTTGCACTTCAATGCCTCT
1 GTTTGCACTTCAATGCCTCT
* *
75360171 ATTTACACTT
1 GTTTGCACTT
75360181 TGGTGTTTCT
Statistics
Matches: 63, Mismatches: 27, Indels: 0
0.70 0.30 0.00
Matches are distributed among these distances:
20 63 1.00
ACGTcount: A:0.15, C:0.25, G:0.15, T:0.45
Consensus pattern (20 bp):
GTTTGCACTTCAATGCCTCT
Found at i:75372443 original size:45 final size:45
Alignment explanation
Indices: 75372391--75372523 Score: 176
Period size: 45 Copynumber: 2.9 Consensus size: 45
75372381 AATCGAATAC
* * *
75372391 GATGCCGATGTCCCAAACATGGTCTTACACGTAACCACATATATA
1 GATGCCGACGTCCCAAACATGGTCTTACACGAAAACACATATATA
** *
75372436 GATGCCGACGTCCCAAATGTGGTCTTACACGAAAACACATATATC
1 GATGCCGACGTCCCAAACATGGTCTTACACGAAAACACATATATA
* * *
75372481 GATGCCAACGTCCCAGACATGGTCTTACACAAAAAACACATAT
1 GATGCCGACGTCCCAAACATGGTCTTACAC-GAAAACACATAT
75372524 CAGAATCCTA
Statistics
Matches: 76, Mismatches: 11, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
45 65 0.86
46 11 0.14
ACGTcount: A:0.35, C:0.27, G:0.16, T:0.22
Consensus pattern (45 bp):
GATGCCGACGTCCCAAACATGGTCTTACACGAAAACACATATATA
Found at i:75373143 original size:25 final size:25
Alignment explanation
Indices: 75373112--75373169 Score: 73
Period size: 25 Copynumber: 2.3 Consensus size: 25
75373102 TCTTTCATAT
*
75373112 TTCATCAACTAGCAAAACT-TAAATA
1 TTCATCAA-TAGCAAAACTCAAAATA
* *
75373137 TTCATCAATGGCATAACTCAAAATA
1 TTCATCAATAGCAAAACTCAAAATA
75373162 TTCATCAA
1 TTCATCAA
75373170 AATAAAAAAG
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
24 8 0.28
25 21 0.72
ACGTcount: A:0.45, C:0.21, G:0.05, T:0.29
Consensus pattern (25 bp):
TTCATCAATAGCAAAACTCAAAATA
Found at i:75377798 original size:20 final size:21
Alignment explanation
Indices: 75377759--75377798 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
75377749 GTTGTAATGA
75377759 CCACACGGGCGTGTTGCCCTT
1 CCACACGGGCGTGTTGCCCTT
75377780 CCACACGGGCGTG-TGCCCT
1 CCACACGGGCGTGTTGCCCT
75377799 ATTTCAAGGG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 6 0.32
21 13 0.68
ACGTcount: A:0.10, C:0.40, G:0.30, T:0.20
Consensus pattern (21 bp):
CCACACGGGCGTGTTGCCCTT
Found at i:75384040 original size:48 final size:45
Alignment explanation
Indices: 75383984--75384158 Score: 179
Period size: 48 Copynumber: 3.7 Consensus size: 45
75383974 GACATTTGTG
75383984 AGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCCCGAGATATTTA
1 AGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCCCGAGATA---A
* * * *** **
75384032 AGCTAGTGTAAAACATGTTTGGGACATGCATCGACAATGAGGCAA
1 AGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCCCGAGATAA
75384077 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGCGAGATACA
1 -AGCTAGTGTAAGACATGTCTGGGACATGCATCGGCC-C-CGAGATA-A
* * *
75384126 AGCTAGTGTAAGACCTATTTGGGACATGGCATC
1 AGCTAGTGTAAGACATGTCTGGGACAT-GCATC
75384159 ATCTTGTTGT
Statistics
Matches: 103, Mismatches: 19, Indels: 9
0.79 0.15 0.07
Matches are distributed among these distances:
45 1 0.01
46 32 0.31
48 64 0.62
49 6 0.06
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.23
Consensus pattern (45 bp):
AGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCCCGAGATAA
Found at i:75384147 original size:94 final size:94
Alignment explanation
Indices: 75383983--75384158 Score: 275
Period size: 94 Copynumber: 1.9 Consensus size: 94
75383973 GGACATTTGT
*
75383983 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCCCGAGATATTTAAGCTAGTGTAAAACAT
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCCCGAGATA-TCAAGCTAGTGTAAAACAT
*
75384048 GTTTGGGACAT-GCATCGACAATGAGGCAA
65 ATTTGGGACATGGCATCGACAATGAGGCAA
* *
75384077 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGCGAGATA-CAAGCTAGTGTAAGACC
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCC-C-CGAGATATCAAGCTAGTGTAAAACA
75384141 TATTTGGGACATGGCATC
64 TATTTGGGACATGGCATC
75384159 ATCTTGTTGT
Statistics
Matches: 75, Mismatches: 4, Indels: 5
0.89 0.05 0.06
Matches are distributed among these distances:
94 62 0.83
95 6 0.08
96 7 0.09
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.23
Consensus pattern (94 bp):
GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCCCGAGATATCAAGCTAGTGTAAAACATA
TTTGGGACATGGCATCGACAATGAGGCAA
Found at i:75385470 original size:21 final size:20
Alignment explanation
Indices: 75385444--75385483 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
75385434 GTTATAATGA
*
75385444 CCACACGGGTGTGTTGCCCTT
1 CCACACGGGCGTG-TGCCCTT
75385465 CCACACGGGCGTGTGCCCT
1 CCACACGGGCGTGTGCCCT
75385484 GTTTCAAGGG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.10, C:0.38, G:0.30, T:0.23
Consensus pattern (20 bp):
CCACACGGGCGTGTGCCCTT
Found at i:75387930 original size:53 final size:53
Alignment explanation
Indices: 75387848--75388154 Score: 330
Period size: 53 Copynumber: 5.8 Consensus size: 53
75387838 TTGAAGGACT
* * * *
75387848 ATATTGTGTAAGGCCATAATTGGTGGGTTATGGCATCATATGGAAAGAAGACC
1 ATATCGTGTAAGACCGTAACTGGTGGGTTATGGCATCATATGGAAAGAAGACC
* * * *
75387901 ATATCTTGTAAGACCGTAACTAGTAGGTTATGACATCATAT-GAAAGGAAGACC
1 ATATCGTGTAAGACCGTAACTGGTGGGTTATGGCATCATATGGAAA-GAAGACC
* * * * * * *
75387954 ATATCTTGTAAGACCTTAATTGGTAGGTTATGGCACCATATGGAAAGAAAATC
1 ATATCGTGTAAGACCGTAACTGGTGGGTTATGGCATCATATGGAAAGAAGACC
* * * **
75388007 ATATCGTGTAAGACCATAGCTGGTGGGTTATGACATCATATAAAAAGAAGACC
1 ATATCGTGTAAGACCGTAACTGGTGGGTTATGGCATCATATGGAAAGAAGACC
* * * * * *
75388060 ACATCGTGTAAAACAGTAATTGGTGGGTTATGGCA-CAATATGGAAAGAAAATC
1 ATATCGTGTAAGACCGTAACTGGTGGGTTATGGCATC-ATATGGAAAGAAGACC
* *
75388113 ATATCGTGTAAGACTGTAACTAGTGGGTTATGGCATCATATG
1 ATATCGTGTAAGACCGTAACTGGTGGGTTATGGCATCATATG
75388155 AGAAGGACTA
Statistics
Matches: 208, Mismatches: 42, Indels: 8
0.81 0.16 0.03
Matches are distributed among these distances:
52 5 0.02
53 198 0.95
54 5 0.02
ACGTcount: A:0.36, C:0.13, G:0.24, T:0.28
Consensus pattern (53 bp):
ATATCGTGTAAGACCGTAACTGGTGGGTTATGGCATCATATGGAAAGAAGACC
Found at i:75388039 original size:106 final size:106
Alignment explanation
Indices: 75387853--75388161 Score: 422
Period size: 106 Copynumber: 2.9 Consensus size: 106
75387843 GGACTATATT
* * * * *
75387853 GTGTAAGGCCATAATTGGTGGGTTATGGCATCATATGGAAAGAAGACCATATCTTGTAAGACCGT
1 GTGTAAGACCATAATTGGTGGGTTATGGCACCATATGGAAAGAAAATCATATCGTGTAAGACCGT
* *
75387918 AACTAGTAGGTTATGACATCATATGAAAGGAAGACCATATC
66 AACTAGTGGGTTATGACATCATATGAAAGGAAGACCACATC
* * * *
75387959 TTGTAAGACCTTAATTGGTAGGTTATGGCACCATATGGAAAGAAAATCATATCGTGTAAGACCAT
1 GTGTAAGACCATAATTGGTGGGTTATGGCACCATATGGAAAGAAAATCATATCGTGTAAGACCGT
* * * *
75388024 AGCTGGTGGGTTATGACATCATATAAAAAGAAGACCACATC
66 AACTAGTGGGTTATGACATCATATGAAAGGAAGACCACATC
* * *
75388065 GTGTAA-AACAGTAATTGGTGGGTTATGGCACAATATGGAAAGAAAATCATATCGTGTAAGACTG
1 GTGTAAGACCA-TAATTGGTGGGTTATGGCACCATATGGAAAGAAAATCATATCGTGTAAGACCG
*
75388129 TAACTAGTGGGTTATGGCATCATATGAGAAGGA
65 TAACTAGTGGGTTATGACATCATATGA-AAGGA
75388162 CTAAGGGAAG
Statistics
Matches: 174, Mismatches: 27, Indels: 3
0.85 0.13 0.01
Matches are distributed among these distances:
105 2 0.01
106 168 0.97
107 4 0.02
ACGTcount: A:0.36, C:0.13, G:0.25, T:0.27
Consensus pattern (106 bp):
GTGTAAGACCATAATTGGTGGGTTATGGCACCATATGGAAAGAAAATCATATCGTGTAAGACCGT
AACTAGTGGGTTATGACATCATATGAAAGGAAGACCACATC
Found at i:75388142 original size:159 final size:159
Alignment explanation
Indices: 75387848--75388154 Score: 368
Period size: 159 Copynumber: 1.9 Consensus size: 159
75387838 TTGAAGGACT
* * * * ** * * *
75387848 ATATTGTGTAAGGCCATAATTGGTGGGTTATGGCATCATATGGAAAGAAGACCATATCTTGTAAG
1 ATATCGTGTAAGACCATAACTGGTGGGTTATGACATCATATAAAAAGAAGACCACATCGTGTAAA
* * * * *
75387913 ACCGTAACTAGTAGGTTATGACATCATATGAAAGGAAGACCATATCTTGTAAGACCTTAATTGGT
66 ACAGTAACTAGTAGGTTATGACATCATATGAAAGGAAAACCATATCGTGTAAGACCTTAACTAGT
75387978 AGGTTATGGCACCATATGGAAAGAAAATC
131 AGGTTATGGCACCATATGGAAAGAAAATC
*
75388007 ATATCGTGTAAGACCATAGCTGGTGGGTTATGACATCATATAAAAAGAAGACCACATCGTGTAAA
1 ATATCGTGTAAGACCATAACTGGTGGGTTATGACATCATATAAAAAGAAGACCACATCGTGTAAA
* * * * *
75388072 ACAGTAATTGGTGGGTTATGGCA-CAATATGGAAA-GAAAATCATATCGTGTAAGA-CTGTAACT
66 ACAGTAACTAGTAGGTTATGACATC-ATAT-GAAAGGAAAACCATATCGTGTAAGACCT-TAACT
* *
75388134 AGTGGGTTATGGCATCATATG
128 AGTAGGTTATGGCACCATATG
75388155 AGAAGGACTA
Statistics
Matches: 123, Mismatches: 22, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
158 3 0.02
159 116 0.94
160 4 0.03
ACGTcount: A:0.36, C:0.13, G:0.24, T:0.28
Consensus pattern (159 bp):
ATATCGTGTAAGACCATAACTGGTGGGTTATGACATCATATAAAAAGAAGACCACATCGTGTAAA
ACAGTAACTAGTAGGTTATGACATCATATGAAAGGAAAACCATATCGTGTAAGACCTTAACTAGT
AGGTTATGGCACCATATGGAAAGAAAATC
Found at i:75391611 original size:10 final size:10
Alignment explanation
Indices: 75391592--75391626 Score: 52
Period size: 10 Copynumber: 3.4 Consensus size: 10
75391582 CTGGAGAAGC
75391592 TTTCTGGAAT
1 TTTCTGGAAT
*
75391602 TTTCTTGAATT
1 TTTCTGGAA-T
75391613 TTTCTGGAAT
1 TTTCTGGAAT
75391623 TTTC
1 TTTC
75391627 AGCTCATTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
10 13 0.59
11 9 0.41
ACGTcount: A:0.17, C:0.11, G:0.14, T:0.57
Consensus pattern (10 bp):
TTTCTGGAAT
Found at i:75391617 original size:11 final size:11
Alignment explanation
Indices: 75391592--75391625 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
75391582 CTGGAGAAGC
75391592 TTTCTGGAA-T
1 TTTCTGGAATT
*
75391602 TTTCTTGAATT
1 TTTCTGGAATT
75391613 TTTCTGGAATT
1 TTTCTGGAATT
75391624 TT
1 TT
75391626 CAGCTCATTA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
10 8 0.38
11 13 0.62
ACGTcount: A:0.18, C:0.09, G:0.15, T:0.59
Consensus pattern (11 bp):
TTTCTGGAATT
Found at i:75394177 original size:18 final size:18
Alignment explanation
Indices: 75394156--75394221 Score: 53
Period size: 18 Copynumber: 3.5 Consensus size: 18
75394146 GAGAAAAATG
75394156 AAAGAAAAAGAAA-TAAAA
1 AAAGAAAAAGAAAGT-AAA
** *
75394174 AAAGAACGAGAAAGTGAA
1 AAAGAAAAAGAAAGTAAA
*
75394192 AAAGAAAAAGAGAGTGAAA
1 AAAGAAAAAGAAAGT-AAA
75394211 GAAAGGAAAAA
1 -AAA-GAAAAA
75394222 ATAAATTGAA
Statistics
Matches: 37, Mismatches: 7, Indels: 5
0.76 0.14 0.10
Matches are distributed among these distances:
18 25 0.68
19 3 0.08
20 3 0.08
21 6 0.16
ACGTcount: A:0.71, C:0.02, G:0.23, T:0.05
Consensus pattern (18 bp):
AAAGAAAAAGAAAGTAAA
Found at i:75396325 original size:23 final size:24
Alignment explanation
Indices: 75396292--75396343 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 24
75396282 CTTAAATTCA
*
75396292 TTTAATTTGTC-T-AGATACAACAT
1 TTTAATGTGTCTTAAGATA-AACAT
*
75396315 TTTAATGTGTCTTAAGCTAAACAT
1 TTTAATGTGTCTTAAGATAAACAT
75396339 TTTAA
1 TTTAA
75396344 ATACAAGTTC
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
23 10 0.40
24 11 0.44
25 4 0.16
ACGTcount: A:0.35, C:0.12, G:0.10, T:0.44
Consensus pattern (24 bp):
TTTAATGTGTCTTAAGATAAACAT
Found at i:75398205 original size:28 final size:27
Alignment explanation
Indices: 75398153--75398207 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 27
75398143 ATCTCTGGAT
*
75398153 AAGGAAGCCATTGTGGCTATCTCTAAA
1 AAGGAAGCCATTGTGGCTACCTCTAAA
*
75398180 AAGGAATGCCTTTGTGGC-ACCATCTAAA
1 AAGGAA-GCCATTGTGGCTACC-TCTAAA
75398208 GAATGAAACT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
27 8 0.33
28 16 0.67
ACGTcount: A:0.33, C:0.20, G:0.22, T:0.25
Consensus pattern (27 bp):
AAGGAAGCCATTGTGGCTACCTCTAAA
Found at i:75415677 original size:40 final size:40
Alignment explanation
Indices: 75415622--75415803 Score: 269
Period size: 40 Copynumber: 4.6 Consensus size: 40
75415612 TATTTGGATG
75415622 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
75415662 ATAACCGAGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
75415702 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * * *
75415742 ATAGCCGGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
* * *
75415782 ATATCC-GGTTAAATCCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGG
75415804 TACTTGGCTT
Statistics
Matches: 131, Mismatches: 10, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
39 15 0.11
40 116 0.89
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Done.