Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 229 of 349
Found at i:75418913 original size:39 final size:40
Alignment explanation
Indices: 75418870--75419039 Score: 252
Period size: 40 Copynumber: 4.3 Consensus size: 40
75418860 TCCTCGTTCA
* * * *
75418870 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCACG
75418909 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCACG
*
75418949 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCACG
* * * *
75418989 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCACG
75419029 AATGCCTTCGG
1 AATGCCTTCGG
75419040 ATCTTAGTCC
Statistics
Matches: 122, Mismatches: 8, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 35 0.29
40 87 0.71
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCACG
Found at i:75418968 original size:40 final size:39
Alignment explanation
Indices: 75418870--75419092 Score: 250
Period size: 40 Copynumber: 5.6 Consensus size: 39
75418860 TCCTCGTTCA
* * * * *
75418870 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
*
75418909 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
75418948 GAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
* *
75418988 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
** * * * *
75419028 AAATGCCTTC-GGATCTTAGTCCGGATGTATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCAC
* *
75419069 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
75419093 CAGCATTCAA
Statistics
Matches: 163, Mismatches: 17, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
39 38 0.23
40 117 0.72
41 8 0.05
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
Found at i:75419092 original size:120 final size:119
Alignment explanation
Indices: 75418870--75419092 Score: 279
Period size: 120 Copynumber: 1.9 Consensus size: 119
75418860 TCCTCGTTCA
* * *
75418870 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGATT
1 AATGCCTTCGGGACATAACCCGGATTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGATG
* *
75418935 TAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
66 TAATAACTAGCACGAAAGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * **
75418989 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGGA
1 AATGCCTTCGGGACATAACCCGGATTTAGTAACTCACAC-AATGCCTTCGGGA-CATAACCCGGA
* * *
75419053 TGTATTCACTTAGCAC-AAAGCCTTCGGGACTTAGCCCGGA
64 TGTAATAAC-TAGCACGAAAGCCTTCGGGACTTAACCCGGA
75419093 CAGCATTCAA
Statistics
Matches: 87, Mismatches: 14, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
119 37 0.43
120 45 0.52
121 5 0.06
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (119 bp):
AATGCCTTCGGGACATAACCCGGATTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGATG
TAATAACTAGCACGAAAGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:75419101 original size:41 final size:41
Alignment explanation
Indices: 75419024--75419101 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
75419014 TTAGTATCTC
* * *
75419024 GCACAAATGCCTTCGGATCTTAGTCCGGATGTATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGAAGCATTCACTTA
75419065 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGA-AGCATTCA
75419102 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 16 0.50
41 16 0.50
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGAAGCATTCACTTA
Found at i:75425923 original size:39 final size:40
Alignment explanation
Indices: 75425876--75426045 Score: 252
Period size: 40 Copynumber: 4.3 Consensus size: 40
75425866 TCCTCGTTCA
* * * *
75425876 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCACG
75425915 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCACG
*
75425955 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCACG
* * * *
75425995 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCACG
75426035 AATGCCTTCGG
1 AATGCCTTCGG
75426046 ATCTTAGTCC
Statistics
Matches: 122, Mismatches: 8, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 35 0.29
40 87 0.71
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCACG
Found at i:75425974 original size:40 final size:39
Alignment explanation
Indices: 75425876--75426098 Score: 250
Period size: 40 Copynumber: 5.6 Consensus size: 39
75425866 TCCTCGTTCA
* * * * *
75425876 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
*
75425915 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
75425954 GAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
* *
75425994 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
** * * * *
75426034 AAATGCCTTC-GGATCTTAGTCCGGATGTATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCAC
* *
75426075 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
75426099 CAGCATTCAA
Statistics
Matches: 163, Mismatches: 17, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
39 38 0.23
40 117 0.72
41 8 0.05
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
Found at i:75426091 original size:120 final size:119
Alignment explanation
Indices: 75425876--75426098 Score: 279
Period size: 120 Copynumber: 1.9 Consensus size: 119
75425866 TCCTCGTTCA
* * *
75425876 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGATT
1 AATGCCTTCGGGACATAACCCGGATTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGATG
* *
75425941 TAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
66 TAATAACTAGCACGAAAGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * **
75425995 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGGA
1 AATGCCTTCGGGACATAACCCGGATTTAGTAACTCACAC-AATGCCTTCGGGA-CATAACCCGGA
* * *
75426059 TGTATTCACTTAGCAC-AAAGCCTTCGGGACTTAGCCCGGA
64 TGTAATAAC-TAGCACGAAAGCCTTCGGGACTTAACCCGGA
75426099 CAGCATTCAA
Statistics
Matches: 87, Mismatches: 14, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
119 37 0.43
120 45 0.52
121 5 0.06
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (119 bp):
AATGCCTTCGGGACATAACCCGGATTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGATG
TAATAACTAGCACGAAAGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:75426107 original size:41 final size:41
Alignment explanation
Indices: 75426030--75426107 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
75426020 TTAGTATCTC
* * *
75426030 GCACAAATGCCTTCGGATCTTAGTCCGGATGTATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGAAGCATTCACTTA
75426071 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGA-AGCATTCA
75426108 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 16 0.50
41 16 0.50
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGAAGCATTCACTTA
Found at i:75433803 original size:40 final size:40
Alignment explanation
Indices: 75433748--75433889 Score: 189
Period size: 40 Copynumber: 3.6 Consensus size: 40
75433738 TATTTGGATG
75433748 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
75433788 ATAACCGGGCTAAGTCTCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * * *
75433828 ATAGCCGGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
* * *
75433868 AT-ATCGGGTTAAATCCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGG
75433890 TACTTGGCTT
Statistics
Matches: 90, Mismatches: 11, Indels: 3
0.87 0.11 0.03
Matches are distributed among these distances:
39 17 0.19
40 73 0.81
ACGTcount: A:0.25, C:0.22, G:0.29, T:0.24
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:75436353 original size:12 final size:12
Alignment explanation
Indices: 75436331--75436363 Score: 57
Period size: 12 Copynumber: 2.7 Consensus size: 12
75436321 CACAACATTC
75436331 TCTCACTCTCTCG
1 TCTC-CTCTCTCG
75436344 TCTCCTCTCTCG
1 TCTCCTCTCTCG
75436356 TCTCCTCT
1 TCTCCTCT
75436364 TTCACTTTTC
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 16 0.80
13 4 0.20
ACGTcount: A:0.03, C:0.48, G:0.06, T:0.42
Consensus pattern (12 bp):
TCTCCTCTCTCG
Found at i:75438088 original size:24 final size:24
Alignment explanation
Indices: 75438056--75438102 Score: 94
Period size: 24 Copynumber: 2.0 Consensus size: 24
75438046 ATGGCAAGAG
75438056 TTAGCCGAAAGATTCCTCATGAAT
1 TTAGCCGAAAGATTCCTCATGAAT
75438080 TTAGCCGAAAGATTCCTCATGAA
1 TTAGCCGAAAGATTCCTCATGAA
75438103 GTATTTCTCG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.34, C:0.21, G:0.17, T:0.28
Consensus pattern (24 bp):
TTAGCCGAAAGATTCCTCATGAAT
Found at i:75443217 original size:15 final size:15
Alignment explanation
Indices: 75443197--75443252 Score: 51
Period size: 15 Copynumber: 3.7 Consensus size: 15
75443187 TCAAGATAAG
*
75443197 GAAATCCATAACAGA
1 GAAATCCAGAACAGA
* *
75443212 GAAATCCAGAATATA
1 GAAATCCAGAACAGA
* *
75443227 GAAATCCA-ACATAAA
1 GAAATCCAGA-ACAGA
75443242 GAAATCCAGAA
1 GAAATCCAGAA
75443253 GAAAATATCA
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
14 1 0.03
15 33 0.94
16 1 0.03
ACGTcount: A:0.55, C:0.18, G:0.12, T:0.14
Consensus pattern (15 bp):
GAAATCCAGAACAGA
Found at i:75448497 original size:14 final size:13
Alignment explanation
Indices: 75448476--75448512 Score: 56
Period size: 14 Copynumber: 2.7 Consensus size: 13
75448466 TAATCAAAGT
75448476 TTTAATTAATTAA
1 TTTAATTAATTAA
75448489 TTATAATTATATTAA
1 TT-TAATTA-ATTAA
75448504 TTTAATTAA
1 TTTAATTAA
75448513 AGTATAAAGG
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
13 3 0.14
14 12 0.55
15 7 0.32
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (13 bp):
TTTAATTAATTAA
Found at i:75449268 original size:19 final size:18
Alignment explanation
Indices: 75449239--75449277 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 18
75449229 ATTAAATTTT
75449239 TTTTATATTTGATTTGAGTA
1 TTTTATATTTG-TTTG-GTA
75449259 TTTT-TATTTGTTTGGTA
1 TTTTATATTTGTTTGGTA
75449276 TT
1 TT
75449278 AGTTTGAAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 5 0.26
18 4 0.21
19 6 0.32
20 4 0.21
ACGTcount: A:0.18, C:0.00, G:0.15, T:0.67
Consensus pattern (18 bp):
TTTTATATTTGTTTGGTA
Found at i:75457626 original size:10 final size:10
Alignment explanation
Indices: 75457611--75457639 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
75457601 TCGAGCCTCA
75457611 ACCTGACCCG
1 ACCTGACCCG
75457621 ACCTGACCCG
1 ACCTGACCCG
75457631 ACCTGACCC
1 ACCTGACCC
75457640 ATTAACAATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.21, C:0.52, G:0.17, T:0.10
Consensus pattern (10 bp):
ACCTGACCCG
Found at i:75459014 original size:22 final size:21
Alignment explanation
Indices: 75458963--75459016 Score: 56
Period size: 22 Copynumber: 2.5 Consensus size: 21
75458953 TTTTTTATTA
* *
75458963 GAATAAA-AAAGTCATTTTTG
1 GAATAAAGAAAGACATTTTAG
*
75458983 GGATAGAAGAAAGACATGTTTAG
1 GAATA-AAGAAAGACAT-TTTAG
75459006 GAATAAAGAAA
1 GAATAAAGAAA
75459017 AGTTTAAGTT
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
20 4 0.15
21 2 0.07
22 13 0.48
23 8 0.30
ACGTcount: A:0.50, C:0.04, G:0.22, T:0.24
Consensus pattern (21 bp):
GAATAAAGAAAGACATTTTAG
Found at i:75462959 original size:38 final size:38
Alignment explanation
Indices: 75462913--75462987 Score: 150
Period size: 38 Copynumber: 2.0 Consensus size: 38
75462903 TCCTTATATG
75462913 ATAATTAAATCATTTGTTAAGTTAGTGGACAAAATGAT
1 ATAATTAAATCATTTGTTAAGTTAGTGGACAAAATGAT
75462951 ATAATTAAATCATTTGTTAAGTTAGTGGACAAAATGA
1 ATAATTAAATCATTTGTTAAGTTAGTGGACAAAATGA
75462988 ACATGGTGAG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.43, C:0.05, G:0.16, T:0.36
Consensus pattern (38 bp):
ATAATTAAATCATTTGTTAAGTTAGTGGACAAAATGAT
Found at i:75463945 original size:42 final size:42
Alignment explanation
Indices: 75463884--75464005 Score: 145
Period size: 43 Copynumber: 2.9 Consensus size: 42
75463874 TAAGGTTAGT
* *
75463884 TGAGATTACGTGTAGGACCATATCTGGGATATGGCATCGATA
1 TGAGATTACGTGTAAGACCATATCTAGGATATGGCATCGATA
* * * *
75463926 TGAGATTTCGTGTAAGACCATAGCTATGCTATTGGCATCGATA
1 TGAGATTACGTGTAAGACCATATCTAGGATA-TGGCATCGATA
* ** *
75463969 TGATATCCCATGTAAGACCATATCTAGGATATGGCAT
1 TGAGATTACGTGTAAGACCATATCTAGGATATGGCAT
75464006 TGGTATGGTA
Statistics
Matches: 66, Mismatches: 13, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
42 31 0.47
43 35 0.53
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (42 bp):
TGAGATTACGTGTAAGACCATATCTAGGATATGGCATCGATA
Found at i:75464130 original size:20 final size:20
Alignment explanation
Indices: 75464089--75464136 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
75464079 CGGCAAAGTT
75464089 TAAGTTGTGAAAGACTAAGG
1 TAAGTTGTGAAAGACTAAGG
* * **
75464109 TATGTTGTGAAAGATTGTGG
1 TAAGTTGTGAAAGACTAAGG
75464129 TAAGTTGT
1 TAAGTTGT
75464137 AAGTTGGTAC
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.31, C:0.02, G:0.31, T:0.35
Consensus pattern (20 bp):
TAAGTTGTGAAAGACTAAGG
Found at i:75465838 original size:29 final size:29
Alignment explanation
Indices: 75465803--75465885 Score: 150
Period size: 29 Copynumber: 2.9 Consensus size: 29
75465793 TGAGTTATAC
75465803 TGATTTGGCTTCGGGCCATGAATATCGGT
1 TGATTTGGCTTCGGGCCATGAATATCGGT
*
75465832 TGATTTGGCTTCGGGCCATTAATATCGGT
1 TGATTTGGCTTCGGGCCATGAATATCGGT
75465861 TGATTTGGCTTCGGGCCATG-ATATC
1 TGATTTGGCTTCGGGCCATGAATATC
75465886 AATTTTCAAA
Statistics
Matches: 52, Mismatches: 2, Indels: 1
0.95 0.04 0.02
Matches are distributed among these distances:
28 5 0.10
29 47 0.90
ACGTcount: A:0.17, C:0.18, G:0.29, T:0.36
Consensus pattern (29 bp):
TGATTTGGCTTCGGGCCATGAATATCGGT
Found at i:75475405 original size:31 final size:31
Alignment explanation
Indices: 75475370--75475432 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
75475360 TGAACGCATG
75475370 GAGGAATATTCATTAATTCACCAATATATTT
1 GAGGAATATTCATTAATTCACCAATATATTT
75475401 GAGGAATATTCATTAATTCACCAATATATTT
1 GAGGAATATTCATTAATTCACCAATATATTT
75475432 G
1 G
75475433 TTATAATAAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.38, C:0.13, G:0.11, T:0.38
Consensus pattern (31 bp):
GAGGAATATTCATTAATTCACCAATATATTT
Found at i:75476105 original size:44 final size:44
Alignment explanation
Indices: 75476049--75476137 Score: 135
Period size: 44 Copynumber: 2.0 Consensus size: 44
75476039 TGAAGTAAAG
* *
75476049 TAGAAGTAGTGATAATTATAC-TTATAAAAGTAATTATAATTTAA
1 TAGAAGTAGTGATAATTACACATT-TAAAAATAATTATAATTTAA
*
75476093 TAGAAGTTGTGATAATTACACATTTAAAAATAATTATAATTTAA
1 TAGAAGTAGTGATAATTACACATTTAAAAATAATTATAATTTAA
75476137 T
1 T
75476138 TTACCGATAA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
44 39 0.95
45 2 0.05
ACGTcount: A:0.47, C:0.03, G:0.10, T:0.39
Consensus pattern (44 bp):
TAGAAGTAGTGATAATTACACATTTAAAAATAATTATAATTTAA
Found at i:75490579 original size:6 final size:6
Alignment explanation
Indices: 75490570--75490599 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
75490560 TTTGAAACTG
*
75490570 CATATA CATATA CATATA CATATA CTTATA
1 CATATA CATATA CATATA CATATA CATATA
75490600 GTTTTATATT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.47, C:0.17, G:0.00, T:0.37
Consensus pattern (6 bp):
CATATA
Found at i:75491268 original size:3 final size:3
Alignment explanation
Indices: 75491260--75491595 Score: 117
Period size: 3 Copynumber: 111.0 Consensus size: 3
75491250 TTTCTAACAA
* * *
75491260 TAT TAT TAT TAT TAT TAT TAT T-T CAT TAT TAT TGT T-T TTT TATT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA-T
** * *
75491304 TAT TAT T-T ATAT TAT GGT TGT CAT TAT TAT TAT TAT TAT TATT TAT
1 TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA-T TAT
** * * * * *
75491350 CGT TAT TAT AAA TA- TAT TGT TTT TAT TCT TAT TAAT GTAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T-AT -TAT TAT TAT
** * * * * *
75491396 TAT CGT T-T TCCAC T-T TAT TAT TAT TAC TAG TAT TAT CAT CA- TAT
1 TAT TAT TAT T--AT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * *
75491440 TAT TA- GACT AAT TAAT T-T TA- TAT TGT TAT TAT TA- TAT TA- TAT
1 TAT TAT TA-T TAT T-AT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* ** *
75491482 ATAT TCT CTCCG TATT TACT TA- TAT TAT TACT TA- TAT TAT TAT TAC
1 -TAT TAT -T-AT TA-T TA-T TAT TAT TAT TA-T TAT TAT TAT TAT TAT
* * *
75491528 TGT TAT CAT TAT TATT TAT TACCT TAT TAT TAT TAT TAT TAT TAT TAC
1 TAT TAT TAT TAT TA-T TAT TA--T TAT TAT TAT TAT TAT TAT TAT TAT
*
75491576 CAT TA- TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT
75491596 ATTTTTTACC
Statistics
Matches: 249, Mismatches: 52, Indels: 64
0.68 0.14 0.18
Matches are distributed among these distances:
2 25 0.10
3 187 0.75
4 31 0.12
5 6 0.02
ACGTcount: A:0.29, C:0.07, G:0.04, T:0.60
Consensus pattern (3 bp):
TAT
Found at i:75491743 original size:15 final size:15
Alignment explanation
Indices: 75491723--75491757 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
75491713 TTATTACTTG
75491723 TATTATTACCATTAA
1 TATTATTACCATTAA
* *
75491738 TATTATTATCATTAC
1 TATTATTACCATTAA
75491753 TATTA
1 TATTA
75491758 CTATTACTAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.37, C:0.11, G:0.00, T:0.51
Consensus pattern (15 bp):
TATTATTACCATTAA
Found at i:75491744 original size:18 final size:18
Alignment explanation
Indices: 75491741--75491782 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
75491731 CCATTAATAT
*
75491741 TATTATCATTACTATTAC
1 TATTACCATTACTATTAC
*
75491759 TATTACTATTACTATTAC
1 TATTACCATTACTATTAC
75491777 TATTAC
1 TATTAC
75491783 TATCATTTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.33, C:0.17, G:0.00, T:0.50
Consensus pattern (18 bp):
TATTACCATTACTATTAC
Found at i:75491757 original size:6 final size:6
Alignment explanation
Indices: 75491748--75491785 Score: 76
Period size: 6 Copynumber: 6.3 Consensus size: 6
75491738 TATTATTATC
75491748 ATTACT ATTACT ATTACT ATTACT ATTACT ATTACT AT
1 ATTACT ATTACT ATTACT ATTACT ATTACT ATTACT AT
75491786 CATTTTTTAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 32 1.00
ACGTcount: A:0.34, C:0.16, G:0.00, T:0.50
Consensus pattern (6 bp):
ATTACT
Found at i:75499201 original size:29 final size:29
Alignment explanation
Indices: 75499138--75499205 Score: 84
Period size: 29 Copynumber: 2.3 Consensus size: 29
75499128 TAATCAACCG
*
75499138 CGCACACTTAGTGCCATGTACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
75499167 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
75499196 CGCACACTTA
1 CGCACACTTA
75499206 CCTTTTCCGC
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
28 3 0.09
29 30 0.91
ACGTcount: A:0.28, C:0.29, G:0.13, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:75499375 original size:29 final size:29
Alignment explanation
Indices: 75499312--75499379 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
75499302 TAATCAACCG
75499312 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
75499341 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
75499370 CGCACACTTA
1 CGCACACTTA
75499380 CCTTTTCCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:75499520 original size:29 final size:30
Alignment explanation
Indices: 75499481--75499559 Score: 110
Period size: 29 Copynumber: 2.7 Consensus size: 30
75499471 CTTAATAATC
75499481 AACCGCGCACACTTAGTGCCATGTAC-TTTA
1 AACC-CGCACACTTAGTGCCATGTACATTTA
*
75499511 AACTCGCACACTTAGTG-C-TGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATTTA
75499540 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
75499560 ATCTCATGAC
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 33 0.77
30 4 0.09
ACGTcount: A:0.29, C:0.30, G:0.15, T:0.25
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATTTA
Found at i:75499553 original size:174 final size:174
Alignment explanation
Indices: 75499029--75499528 Score: 932
Period size: 174 Copynumber: 2.9 Consensus size: 174
75499019 AACTCAAGGT
* *
75499029 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
*
75499094 G-AAA-ATATATTGAGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
75499157 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
75499201 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
* *
75499266 GAAAATATATATTGGGTTCGCACACATAGTGCTCAATAATCAACCGCGCACACTTAGTGCCATGC
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
75499331 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
75499375 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
75499440 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
*
75499505 ACTTTAAACTCGCACACTTAGTGC
131 ACTTTAAACTCACACACTTAGTGC
75499529 TGTACAATTT
Statistics
Matches: 318, Mismatches: 8, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
172 64 0.20
173 3 0.01
174 251 0.79
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.30
Consensus pattern (174 bp):
ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
Found at i:75508405 original size:40 final size:40
Alignment explanation
Indices: 75508361--75508622 Score: 337
Period size: 39 Copynumber: 6.7 Consensus size: 40
75508351 GCTCCTCGTT
* *
75508361 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
75508401 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
75508441 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
75508480 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
75508519 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
75508558 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
75508599 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
75508623 CATCATTCAA
Statistics
Matches: 205, Mismatches: 9, Indels: 17
0.89 0.04 0.07
Matches are distributed among these distances:
38 2 0.01
39 128 0.62
40 64 0.31
41 11 0.05
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:75510891 original size:29 final size:29
Alignment explanation
Indices: 75510828--75510895 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
75510818 TAATCAACCG
75510828 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
75510857 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
75510886 CGCACACTTA
1 CGCACACTTA
75510896 CCTTTTCCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:75511036 original size:29 final size:30
Alignment explanation
Indices: 75510997--75511075 Score: 110
Period size: 29 Copynumber: 2.7 Consensus size: 30
75510987 CTTAATAATC
75510997 AACCGCGCACACTTAGTGCCATGTAC-TTTA
1 AACC-CGCACACTTAGTGCCATGTACATTTA
*
75511027 AACTCGCACACTTAGTG-C-TGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATTTA
75511056 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
75511076 ATCTCATGAC
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 33 0.77
30 4 0.09
ACGTcount: A:0.29, C:0.30, G:0.15, T:0.25
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATTTA
Found at i:75511069 original size:174 final size:174
Alignment explanation
Indices: 75510545--75511044 Score: 896
Period size: 174 Copynumber: 2.9 Consensus size: 174
75510535 AACTCAAGGT
* *
75510545 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
* *
75510610 GAAAATATATA--GAGTTCGCACACATAATGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
* *
75510673 ACTTTAAACTCACGCACTTAGTGCCATGCATTTCAAGTTCGTAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
*
75510717 ACTTACCTTTTCCGTTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
* *
75510782 GAAAATATATATTGGGTTCGCACACATAGTGCTCAATAATCAACCGCGCACACTTAGTGCCATGC
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
75510847 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
75510891 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
75510956 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
*
75511021 ACTTTAAACTCGCACACTTAGTGC
131 ACTTTAAACTCACACACTTAGTGC
75511045 TGTACAATTT
Statistics
Matches: 313, Mismatches: 13, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
172 73 0.23
174 240 0.77
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.30
Consensus pattern (174 bp):
ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
Found at i:75514620 original size:3 final size:3
Alignment explanation
Indices: 75514612--75514678 Score: 80
Period size: 3 Copynumber: 22.3 Consensus size: 3
75514602 ACACAATATT
* * * * * *
75514612 ATA ATA ATA ATA ATA ATA ATA ACA ATA ATA ACA ACA ACA ACA ACA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
75514660 ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA A
75514679 GGTAAACATG
Statistics
Matches: 60, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 60 1.00
ACGTcount: A:0.67, C:0.09, G:0.00, T:0.24
Consensus pattern (3 bp):
ATA
Found at i:75515691 original size:19 final size:20
Alignment explanation
Indices: 75515669--75515711 Score: 61
Period size: 19 Copynumber: 2.2 Consensus size: 20
75515659 TACATCATCT
75515669 ACTAATTAACTAAATC-ACA
1 ACTAATTAACTAAATCAACA
* *
75515688 ACTAATTAGCTATATCAACA
1 ACTAATTAACTAAATCAACA
75515708 ACTA
1 ACTA
75515712 TAGAAGACAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 14 0.67
20 7 0.33
ACGTcount: A:0.49, C:0.21, G:0.02, T:0.28
Consensus pattern (20 bp):
ACTAATTAACTAAATCAACA
Found at i:75516393 original size:44 final size:42
Alignment explanation
Indices: 75516335--75516524 Score: 151
Period size: 40 Copynumber: 4.5 Consensus size: 42
75516325 TATGACGATA
*
75516335 TGCACACTTAGTGCCATCATGTTAAACCGAAGCTATCTTAGTAT
1 TGCACACTTAGTGCCATCAT-AT-AACCGAAGCTATCTTAGTAT
* * * *
75516379 TGCACACTTAGTGCCA-CATATAGCCAAAGTTAT-TCCA--AT
1 TGCACACTTAGTGCCATCATATAACCGAAGCTATCT-TAGTAT
* * * * * *
75516418 TCGCACACTGAGTGCTAT-ATATAGCCGAAGCTATC-TCGAAA
1 T-GCACACTTAGTGCCATCATATAACCGAAGCTATCTTAGTAT
* * *
75516459 TGCACACTAAGTGCCAACATGTTAAACCGAAGCTATCTTAGTAT
1 TGCACACTTAGTGCCATCAT-AT-AACCGAAGCTATCTTAGTAT
75516503 TGCACACTTAGTGCCA-CATATA
1 TGCACACTTAGTGCCATCATATA
75516525 GCCAAAGTTA
Statistics
Matches: 114, Mismatches: 22, Indels: 23
0.72 0.14 0.14
Matches are distributed among these distances:
39 3 0.03
40 41 0.36
41 15 0.13
42 3 0.03
43 18 0.16
44 34 0.30
ACGTcount: A:0.32, C:0.24, G:0.16, T:0.28
Consensus pattern (42 bp):
TGCACACTTAGTGCCATCATATAACCGAAGCTATCTTAGTAT
Found at i:75516440 original size:40 final size:39
Alignment explanation
Indices: 75516377--75516609 Score: 171
Period size: 40 Copynumber: 5.7 Consensus size: 39
75516367 CTATCTTAGT
* *
75516377 ATTGCACACTTAGTGCCACATATAGCCAAAGTTATTCCA
1 ATTGCACACTGAGTGCCACATATAGCCAAAGCTATTCCA
* * * *
75516416 ATTCGCACACTGAGTGCTATATATAGCCGAAGCTATCTCGA
1 ATT-GCACACTGAGTGCCACATATAGCCAAAGCTAT-TCCA
* * * * * *
75516457 AATGCACACTAAGTGCCAACATGTTAAACCGAAGCTA-TCTTA
1 ATTGCACACTGAGTGCC-ACAT-AT-AGCCAAAGCTATTC-CA
* *
75516499 GTATTGCACACTTAGTGCCACATATAGCCAAAGTTATTCCA
1 --ATTGCACACTGAGTGCCACATATAGCCAAAGCTATTCCA
* * * *
75516540 ATTCGCACACTGAGTGCTATATATAGCCGAAGCTATCTCGA
1 ATT-GCACACTGAGTGCCACATATAGCCAAAGCTAT-TCCA
* * * *
75516581 AATGCACACTAAGTGCCAAACATAGCCAA
1 ATTGCACACTGAGTGCCACATATAGCCAA
75516610 TTTGTCGTCA
Statistics
Matches: 151, Mismatches: 32, Indels: 21
0.74 0.16 0.10
Matches are distributed among these distances:
39 6 0.04
40 87 0.58
41 24 0.16
42 5 0.03
43 14 0.09
44 15 0.10
ACGTcount: A:0.34, C:0.25, G:0.16, T:0.25
Consensus pattern (39 bp):
ATTGCACACTGAGTGCCACATATAGCCAAAGCTATTCCA
Found at i:75516539 original size:124 final size:124
Alignment explanation
Indices: 75516319--75516599 Score: 517
Period size: 124 Copynumber: 2.3 Consensus size: 124
75516309 AATGATTAGT
** * * *
75516319 CGAAGCTATGACGATATGCACACTTAGTGCCATCATGTTAAACCGAAGCTATCTTAGTATTGCAC
1 CGAAGCTATCTCGAAATGCACACTAAGTGCCAACATGTTAAACCGAAGCTATCTTAGTATTGCAC
75516384 ACTTAGTGCCACATATAGCCAAAGTTATTCCAATTCGCACACTGAGTGCTATATATAGC
66 ACTTAGTGCCACATATAGCCAAAGTTATTCCAATTCGCACACTGAGTGCTATATATAGC
75516443 CGAAGCTATCTCGAAATGCACACTAAGTGCCAACATGTTAAACCGAAGCTATCTTAGTATTGCAC
1 CGAAGCTATCTCGAAATGCACACTAAGTGCCAACATGTTAAACCGAAGCTATCTTAGTATTGCAC
75516508 ACTTAGTGCCACATATAGCCAAAGTTATTCCAATTCGCACACTGAGTGCTATATATAGC
66 ACTTAGTGCCACATATAGCCAAAGTTATTCCAATTCGCACACTGAGTGCTATATATAGC
75516567 CGAAGCTATCTCGAAATGCACACTAAGTGCCAA
1 CGAAGCTATCTCGAAATGCACACTAAGTGCCAA
75516600 ACATAGCCAA
Statistics
Matches: 152, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
124 152 1.00
ACGTcount: A:0.33, C:0.24, G:0.17, T:0.26
Consensus pattern (124 bp):
CGAAGCTATCTCGAAATGCACACTAAGTGCCAACATGTTAAACCGAAGCTATCTTAGTATTGCAC
ACTTAGTGCCACATATAGCCAAAGTTATTCCAATTCGCACACTGAGTGCTATATATAGC
Found at i:75521605 original size:26 final size:26
Alignment explanation
Indices: 75521552--75521623 Score: 83
Period size: 26 Copynumber: 2.8 Consensus size: 26
75521542 AGTTTTCTTG
*
75521552 AAATTTTACCAGGGTAAAATCGT-CA
1 AAATTTTACCAGGGTAAAATCGTAAA
* *
75521577 AAATTTTACCGGGAGTAAAATTGTAAA
1 AAATTTTACCAGG-GTAAAATCGTAAA
* *
75521604 AAATTTTACTAGGGGAAAAT
1 AAATTTTACCAGGGTAAAAT
75521624 TGGGATGAGA
Statistics
Matches: 39, Mismatches: 6, Indels: 3
0.81 0.12 0.06
Matches are distributed among these distances:
25 12 0.31
26 15 0.38
27 12 0.31
ACGTcount: A:0.43, C:0.10, G:0.18, T:0.29
Consensus pattern (26 bp):
AAATTTTACCAGGGTAAAATCGTAAA
Found at i:75526391 original size:51 final size:49
Alignment explanation
Indices: 75526260--75526443 Score: 174
Period size: 51 Copynumber: 3.7 Consensus size: 49
75526250 AGCTATCTGA
*
75526260 TACGCATAGTAGCCTGCACTTAGTACTACACATGCGATCAACAATCCGG
1 TACGCATAGTAGCCTGCACTTAGTACTACACACGCGATCAACAATCCGG
* * * *
75526309 TACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTC-AT-TGAG
1 TACGCATAGTAGCCTGCACTTAGTACTACACACGCGATC-AA--CAATCCG-G
* * * * ** *
75526360 TATGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAGTATGA
1 TACGCATAGTAGCCTGCACTTAGTACTACACACGCGATC-AACAATCCGG
* * *
75526410 TACACGTAGTAGCCTACACTTAGTACTACACACG
1 TACGCATAGTAGCCTGCACTTAGTACTACACACG
75526444 TGTATTCACA
Statistics
Matches: 110, Mismatches: 19, Indels: 11
0.79 0.14 0.08
Matches are distributed among these distances:
49 36 0.33
50 33 0.30
51 40 0.36
52 1 0.01
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.24
Consensus pattern (49 bp):
TACGCATAGTAGCCTGCACTTAGTACTACACACGCGATCAACAATCCGG
Found at i:75533645 original size:25 final size:25
Alignment explanation
Indices: 75533617--75533668 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
75533607 CGTTCCACAC
75533617 TTCACCTTATAATAACTTTCACATA
1 TTCACCTTATAATAACTTTCACATA
75533642 TTCACCTTATAATAACTTTCACATA
1 TTCACCTTATAATAACTTTCACATA
75533667 TT
1 TT
75533669 ACCACTTTAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (25 bp):
TTCACCTTATAATAACTTTCACATA
Found at i:75533739 original size:134 final size:134
Alignment explanation
Indices: 75533499--75533752 Score: 499
Period size: 134 Copynumber: 1.9 Consensus size: 134
75533489 AAACATAAAT
75533499 TTTCACATATTCACCTTATAATAACTTTCACATATTACCACTTTATCGATTTTCCCCGTTGAATT
1 TTTCACATATTCACCTTATAATAACTTTCACATATTACCACTTTATCGATTTTCCCCGTTGAATT
75533564 CAATGGAAAATAACAAATACACCATTGTTTACACATATTTCCCCGTTCCACACTTCACCTTATAA
66 CAATGGAAAATAACAAATACACCATTGTTTACACATATTTCCCCGTTCCACACTTCACCTTATAA
75533629 TAAC
131 TAAC
75533633 TTTCACATATTCACCTTATAATAACTTTCACATATTACCACTTTATCGATTTTCCCCGTTGAATT
1 TTTCACATATTCACCTTATAATAACTTTCACATATTACCACTTTATCGATTTTCCCCGTTGAATT
*
75533698 CAATGGAAAATAACAAATACACTATTGTTTACACATATTTCCCCGTTCCACACTT
66 CAATGGAAAATAACAAATACACCATTGTTTACACATATTTCCCCGTTCCACACTT
75533753 ATAGCCGAAG
Statistics
Matches: 119, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
134 119 1.00
ACGTcount: A:0.32, C:0.26, G:0.06, T:0.37
Consensus pattern (134 bp):
TTTCACATATTCACCTTATAATAACTTTCACATATTACCACTTTATCGATTTTCCCCGTTGAATT
CAATGGAAAATAACAAATACACCATTGTTTACACATATTTCCCCGTTCCACACTTCACCTTATAA
TAAC
Found at i:75533879 original size:50 final size:49
Alignment explanation
Indices: 75533788--75534002 Score: 229
Period size: 50 Copynumber: 4.3 Consensus size: 49
75533778 AGTGGCCTGT
* *
75533788 ACTTAGTACTACACATGCGA-TCAACAATCTGGTACATGTAGTAGCCTAC
1 ACTTAGTACTACACATGTGACTCAAC-ATCTGGTACACGTAGTAGCCTAC
* * *
75533837 ACTTAGTACTACACACGTGACCTCATCATCTGGTACACGTAGTAGCCTGC
1 ACTTAGTACTACACATGTGA-CTCAACATCTGGTACACGTAGTAGCCTAC
* * * * *
75533887 ACTTAGCACTACAAATGTGA-TCAA-AGTCATTGAGTACGCATAGTAGCCTGC
1 ACTTAGTACTACACATGTGACTCAACA-TC--TG-GTACACGTAGTAGCCTAC
* * *
75533938 ACTTAGTACTACACATGTGACTTAACAGTATGATACACGTAGTAGCCTAC
1 ACTTAGTACTACACATGTGACTCAACA-TCTGGTACACGTAGTAGCCTAC
75533988 ACTTAGTACTACACA
1 ACTTAGTACTACACA
75534003 CGTGTATTCA
Statistics
Matches: 139, Mismatches: 19, Indels: 15
0.80 0.11 0.09
Matches are distributed among these distances:
47 1 0.01
48 5 0.04
49 18 0.13
50 69 0.50
51 40 0.29
52 3 0.02
53 3 0.02
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.27
Consensus pattern (49 bp):
ACTTAGTACTACACATGTGACTCAACATCTGGTACACGTAGTAGCCTAC
Found at i:75535338 original size:3 final size:3
Alignment explanation
Indices: 75535330--75535364 Score: 52
Period size: 3 Copynumber: 11.7 Consensus size: 3
75535320 TTAATTACTA
* *
75535330 GGT GGT GGT GGT GGT GGT GGT GGC GGT GGT TGT GG
1 GGT GGT GGT GGT GGT GGT GGT GGT GGT GGT GGT GG
75535365 GTCCTCATGA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.00, C:0.03, G:0.66, T:0.31
Consensus pattern (3 bp):
GGT
Found at i:75536788 original size:21 final size:21
Alignment explanation
Indices: 75536764--75536803 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
75536754 AAATGTATAA
*
75536764 TATAATAATAATATTAATACT
1 TATAATAATAATAATAATACT
* *
75536785 TATACTGATAATAATAATA
1 TATAATAATAATAATAATA
75536804 AAAAAACAAA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.53, C:0.05, G:0.03, T:0.40
Consensus pattern (21 bp):
TATAATAATAATAATAATACT
Found at i:75545669 original size:34 final size:34
Alignment explanation
Indices: 75545626--75545698 Score: 146
Period size: 34 Copynumber: 2.1 Consensus size: 34
75545616 GTTGTTGTAG
75545626 ACAAAATGTGCACTTGATATCCATAATTTATGGT
1 ACAAAATGTGCACTTGATATCCATAATTTATGGT
75545660 ACAAAATGTGCACTTGATATCCATAATTTATGGT
1 ACAAAATGTGCACTTGATATCCATAATTTATGGT
75545694 ACAAA
1 ACAAA
75545699 TTGATACAAA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 39 1.00
ACGTcount: A:0.38, C:0.15, G:0.14, T:0.33
Consensus pattern (34 bp):
ACAAAATGTGCACTTGATATCCATAATTTATGGT
Found at i:75545747 original size:26 final size:26
Alignment explanation
Indices: 75545710--75545843 Score: 250
Period size: 26 Copynumber: 5.2 Consensus size: 26
75545700 TGATACAAAT
*
75545710 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
75545736 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
75545762 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
75545788 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
75545814 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
75545840 TGAT
1 TGAT
75545844 GGGAATTTCA
Statistics
Matches: 105, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 105 1.00
ACGTcount: A:0.31, C:0.07, G:0.26, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:75553262 original size:21 final size:21
Alignment explanation
Indices: 75553232--75553277 Score: 74
Period size: 21 Copynumber: 2.2 Consensus size: 21
75553222 AGCCTAAACT
75553232 GTGTGACTACTACACACACCC
1 GTGTGACTACTACACACACCC
* *
75553253 GTGTGGCTACTACACACGCCC
1 GTGTGACTACTACACACACCC
75553274 GTGT
1 GTGT
75553278 AACTCATTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.22, C:0.35, G:0.22, T:0.22
Consensus pattern (21 bp):
GTGTGACTACTACACACACCC
Found at i:75560300 original size:19 final size:20
Alignment explanation
Indices: 75560272--75560309 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
75560262 TCTCATTTTT
*
75560272 TATTTGTTTTT-TGTTTTAA
1 TATTTATTTTTATGTTTTAA
75560291 TATTTATTTTTATGTTTTA
1 TATTTATTTTTATGTTTTA
75560310 GATGTATTTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.18, C:0.00, G:0.08, T:0.74
Consensus pattern (20 bp):
TATTTATTTTTATGTTTTAA
Found at i:75561438 original size:7 final size:7
Alignment explanation
Indices: 75561423--75561453 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
75561413 TCCTTCCCTT
*
75561423 TTTCACC
1 TTTCCCC
75561430 TTTCCCC
1 TTTCCCC
75561437 TTTCCCC
1 TTTCCCC
75561444 TTTCCCC
1 TTTCCCC
75561451 TTT
1 TTT
75561454 TTCTTTTCCT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.03, C:0.48, G:0.00, T:0.48
Consensus pattern (7 bp):
TTTCCCC
Found at i:75561942 original size:24 final size:24
Alignment explanation
Indices: 75561915--75561968 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 24
75561905 TCTTTCTAAA
*
75561915 AGATTTAGTATTTATGAGTATAAT
1 AGATTTAGTATTTATGAGCATAAT
*
75561939 AGATTTAGTATTTATTAGCATAAT
1 AGATTTAGTATTTATGAGCATAAT
*
75561963 ATATTT
1 AGATTT
75561969 GACTTTGATT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.37, C:0.02, G:0.13, T:0.48
Consensus pattern (24 bp):
AGATTTAGTATTTATGAGCATAAT
Found at i:75565944 original size:47 final size:47
Alignment explanation
Indices: 75565866--75566371 Score: 760
Period size: 47 Copynumber: 10.6 Consensus size: 47
75565856 CCCTTCGGGA
* * * * * *
75565866 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
75565913 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
75565960 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
75566007 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
75566054 CTTATCACATATATACACTTTCACATTCATCACATCAGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
75566101 CTTATCACATATATATACACTTTCACATTCATCACATTGGTCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
75566150 CTTATCACATATATACACTTTCACATTCATCATATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
75566197 CTTATCACATATATACACTTTCACATTCATCATATTGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
75566244 CTTATCACATATATATACACTTTCACATTCATCACATTGGTCATTCGAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
75566293 CTTATCACATATATATACACTTTCACATTCATCATATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
75566342 CTTATCACATATATACACTTTCACATTCAT
1 CTTATCACATATATACACTTTCACATTCAT
75566372 TCAAATATAC
Statistics
Matches: 422, Mismatches: 33, Indels: 8
0.91 0.07 0.02
Matches are distributed among these distances:
47 292 0.69
49 130 0.31
ACGTcount: A:0.29, C:0.28, G:0.08, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:75566179 original size:143 final size:143
Alignment explanation
Indices: 75565866--75566371 Score: 809
Period size: 143 Copynumber: 3.5 Consensus size: 143
75565856 CCCTTCGGGA
* * * * * * * *
75565866 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
75565931 TTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCACA
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
* * *
75565994 TCGGCCATTAGGC
131 TTGGTCATTCGGC
*
75566007 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
75566072 TTTCACATTCATCACATCAGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
75566137 TTGGTCATTCGGC
131 TTGGTCATTCGGC
* *
75566150 CTTATCACATATATACACTTTCACATTCATCATATCGGCTATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
* *
75566215 TTTCACATTCATCATATTGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
*
75566280 TTGGTCATTCGAC
131 TTGGTCATTCGGC
*
75566293 CTTATCACATATATATACACTTTCACATTCATCATATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
75566358 ACTTTCACATTCAT
64 ACTTTCACATTCAT
75566372 TCAAATATAC
Statistics
Matches: 342, Mismatches: 19, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
141 92 0.27
143 182 0.53
145 68 0.20
ACGTcount: A:0.29, C:0.28, G:0.08, T:0.34
Consensus pattern (143 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
TTGGTCATTCGGC
Found at i:75569256 original size:46 final size:46
Alignment explanation
Indices: 75569099--75569257 Score: 155
Period size: 46 Copynumber: 3.4 Consensus size: 46
75569089 GGGTGTCACA
* * * * *
75569099 GGACTCAACTCAATGAGCTCGGGCGTTCGCATCCATAAGTGAACTC
1 GGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAACTC
* * * *
75569145 GGACTCAACTCAACGAGTTCA-A-ATGC-CTAGTTACATTTCA-CGAACTC
1 GGACTCAACTCAACGAGTTCAGACATTCGC-A--TCCA--TAAGTGAACTC
*
75569192 GGACTCAACTCAATGAGTTCAGACATTCGCATCCATAAGTGAACTC
1 GGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAACTC
75569238 GGACTCAACTCAACGAGTTC
1 GGACTCAACTCAACGAGTTC
75569258 GGATGCTCAA
Statistics
Matches: 89, Mismatches: 15, Indels: 18
0.73 0.12 0.15
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 2 0.02
46 46 0.52
47 29 0.33
48 3 0.03
49 4 0.04
50 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (46 bp):
GGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAACTC
Found at i:75571305 original size:235 final size:235
Alignment explanation
Indices: 75570894--75571366 Score: 928
Period size: 235 Copynumber: 2.0 Consensus size: 235
75570884 AGTTTTATAA
*
75570894 ATTATGCACGTTAGAAGGGATTGTGAGACACTTGACAGTTTGTCATACTTCATAGCAAAACAGCG
1 ATTATGCAAGTTAGAAGGGATTGTGAGACACTTGACAGTTTGTCATACTTCATAGCAAAACAGCG
75570959 TTGCAGAACAATCATGGAGAAGGTTCGATGTATGTTGTCAAATGCCAACTTACCAAAGTTGTTTT
66 TTGCAGAACAATCATGGAGAAGGTTCGATGTATGTTGTCAAATGCCAACTTACCAAAGTTGTTTT
75571024 GGGCCGAAGCAGCCTCTACTTCATGTTTTTTGATCAATCGATCTTCATCCATTTCCATTCAGAAA
131 GGGCCGAAGCAGCCTCTACTTCATGTTTTTTGATCAATCGATCTTCATCCATTTCCATTCAGAAA
75571089 AAGACTCCACAAGAGGTATGGTCTGGTAATCCTACTAACT
196 AAGACTCCACAAGAGGTATGGTCTGGTAATCCTACTAACT
*
75571129 ATTATGCAAGTTAGAAGGGATTGTGAGACACTTGACAGTTTGTCATACTTCATAGCAAAATAGCG
1 ATTATGCAAGTTAGAAGGGATTGTGAGACACTTGACAGTTTGTCATACTTCATAGCAAAACAGCG
75571194 TTGCAGAACAATCATGGAGAAGGTTCGATGTATGTTGTCAAATGCCAACTTACCAAAGTTGTTTT
66 TTGCAGAACAATCATGGAGAAGGTTCGATGTATGTTGTCAAATGCCAACTTACCAAAGTTGTTTT
75571259 GGGCCGAAGCAGCCTCTACTTCATGTTTTTTGATCAATCGATCTTCATCCATTTCCATTCAGAAA
131 GGGCCGAAGCAGCCTCTACTTCATGTTTTTTGATCAATCGATCTTCATCCATTTCCATTCAGAAA
75571324 AAGACTCCACAAGAGGTATGGTCTGGTAATCCTACTAACT
196 AAGACTCCACAAGAGGTATGGTCTGGTAATCCTACTAACT
75571364 ATT
1 ATT
75571367 CTGATTTAAA
Statistics
Matches: 236, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
235 236 1.00
ACGTcount: A:0.30, C:0.19, G:0.20, T:0.31
Consensus pattern (235 bp):
ATTATGCAAGTTAGAAGGGATTGTGAGACACTTGACAGTTTGTCATACTTCATAGCAAAACAGCG
TTGCAGAACAATCATGGAGAAGGTTCGATGTATGTTGTCAAATGCCAACTTACCAAAGTTGTTTT
GGGCCGAAGCAGCCTCTACTTCATGTTTTTTGATCAATCGATCTTCATCCATTTCCATTCAGAAA
AAGACTCCACAAGAGGTATGGTCTGGTAATCCTACTAACT
Found at i:75575548 original size:42 final size:42
Alignment explanation
Indices: 75575437--75575558 Score: 147
Period size: 43 Copynumber: 2.9 Consensus size: 42
75575427 TACCGTAACA
* * **
75575437 ATGCCATATCCTAGATATGGTCTTACATGTAATCTTGTATCG
1 ATGCCATATCCCAGATATGGTCTTACACGTAATCTCATATCG
* *
75575479 ATGCCAATAGCCCAGCTATGGTCTTACACG-AAGTCTCATATCG
1 ATGCC-ATATCCCAGATATGGTCTTACACGTAA-TCTCATATCG
* *
75575522 ATGCCATATCCCAGATATGGCCTTACATGTAATCTCA
1 ATGCCATATCCCAGATATGGTCTTACACGTAATCTCA
75575559 GTAACCCTAA
Statistics
Matches: 67, Mismatches: 10, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
42 32 0.48
43 35 0.52
ACGTcount: A:0.28, C:0.25, G:0.16, T:0.31
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACGTAATCTCATATCG
Found at i:75578979 original size:16 final size:15
Alignment explanation
Indices: 75578954--75578983 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
75578944 CCTCTCTTCT
75578954 ATTTTGTTGCTATTA
1 ATTTTGTTGCTATTA
75578969 ATTTGTGTTGCTATT
1 ATTT-TGTTGCTATT
75578984 TTTCTAGCCT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.17, C:0.07, G:0.17, T:0.60
Consensus pattern (15 bp):
ATTTTGTTGCTATTA
Found at i:75581564 original size:29 final size:28
Alignment explanation
Indices: 75581528--75581605 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
75581518 TCATGAGATT
75581528 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
*
75581558 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
75581585 TGGCACTAAGTGTGCGTGGTT
1 -GGCACTAAGTGTGCG-GGTT
75581606 GATTATTAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 5 0.12
29 35 0.81
30 3 0.07
ACGTcount: A:0.26, C:0.14, G:0.31, T:0.29
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:75581823 original size:174 final size:174
Alignment explanation
Indices: 75581558--75581885 Score: 611
Period size: 174 Copynumber: 1.9 Consensus size: 174
75581548 AAATTGTACA
75581558 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGTGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGTGGTTGATTATTAAGCACTATG
* *
75581623 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACCTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACCTTACCGAGTCAA
75581688 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
* *
75581732 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGTGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGTGGTTGATTATTAAGCACTATG
*
75581797 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACCTTACCGAGTCAA
75581862 TTTTGGACAGCGGAAAAGGTAAGT
131 TTTTGGACAGCGGAAAAGGTAAGT
75581886 ACCTTGAGTT
Statistics
Matches: 149, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
174 149 1.00
ACGTcount: A:0.30, C:0.14, G:0.25, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGTGGTTGATTATTAAGCACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACCTTACCGAGTCAA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:75589724 original size:29 final size:28
Alignment explanation
Indices: 75589688--75589765 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
75589678 TCATGAGATT
75589688 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
*
75589718 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
75589745 TGGCACTAAGTGTGCGTGGTT
1 -GGCACTAAGTGTGCG-GGTT
75589766 GATTATTAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 5 0.12
29 35 0.81
30 3 0.07
ACGTcount: A:0.26, C:0.14, G:0.31, T:0.29
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:75589983 original size:174 final size:174
Alignment explanation
Indices: 75589718--75590045 Score: 593
Period size: 174 Copynumber: 1.9 Consensus size: 174
75589708 AAATTGTACA
*
75589718 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGTGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
* * *
75589783 TGTGCTAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACCTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACCTTACCGAGTCAA
75589848 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
* *
75589892 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
*
75589957 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACCTTACCGAGTCAA
75590022 TTTTGGACAGCGGAAAAGGTAAGT
131 TTTTGGACAGCGGAAAAGGTAAGT
75590046 ACCTTGAGTT
Statistics
Matches: 147, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
174 147 1.00
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACCTTACCGAGTCAA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:75595573 original size:13 final size:13
Alignment explanation
Indices: 75595555--75595581 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
75595545 GTAATTTATG
75595555 GATACTATGATAA
1 GATACTATGATAA
75595568 GATACTATGATAA
1 GATACTATGATAA
75595581 G
1 G
75595582 TTCCACCTGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.44, C:0.07, G:0.19, T:0.30
Consensus pattern (13 bp):
GATACTATGATAA
Found at i:75596286 original size:64 final size:64
Alignment explanation
Indices: 75596185--75596312 Score: 229
Period size: 64 Copynumber: 2.0 Consensus size: 64
75596175 CTATAAATAG
* *
75596185 GCACCTTTGGCACATGTTAAAGACAACTTTCCATTAACCTAGTTTCTTTCTTTAAAATTAGTTT
1 GCACCTTTGGAACATGTTAAAGACAACTTTCCATTAACCTAGTTTATTTCTTTAAAATTAGTTT
*
75596249 GCACCTTTGGAACATGTTAAAGACACCTTTCCATTAACCTAGTTTATTTCTTTAAAATTAGTTT
1 GCACCTTTGGAACATGTTAAAGACAACTTTCCATTAACCTAGTTTATTTCTTTAAAATTAGTTT
75596313 CATTTTCTTT
Statistics
Matches: 61, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
64 61 1.00
ACGTcount: A:0.29, C:0.20, G:0.11, T:0.41
Consensus pattern (64 bp):
GCACCTTTGGAACATGTTAAAGACAACTTTCCATTAACCTAGTTTATTTCTTTAAAATTAGTTT
Found at i:75602159 original size:80 final size:81
Alignment explanation
Indices: 75602013--75602164 Score: 252
Period size: 80 Copynumber: 1.9 Consensus size: 81
75602003 CCTTAATTTG
* *
75602013 TAAAATTACTGAAATACCCTCGATTTGTAAAATTACTGAAATACCTTCAACTTGTAAAATTACCA
1 TAAAATTACTGAAATACCCTCGATTTGTAAAATTACTAAAATACCCTCAACTTGTAAAATTACCA
75602078 AAGTACCCCCGGTTTA
66 AAGTACCCCCGGTTTA
* * *
75602094 TAAAATTACTGAAATACCGTCGA-TTGTAAAATTACTAAAATGCCCTCAATTTGTAAAATTACCA
1 TAAAATTACTGAAATACCCTCGATTTGTAAAATTACTAAAATACCCTCAACTTGTAAAATTACCA
75602158 AAGTACC
66 AAGTACC
75602165 TTTGATTTAC
Statistics
Matches: 66, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
80 44 0.67
81 22 0.33
ACGTcount: A:0.40, C:0.20, G:0.10, T:0.30
Consensus pattern (81 bp):
TAAAATTACTGAAATACCCTCGATTTGTAAAATTACTAAAATACCCTCAACTTGTAAAATTACCA
AAGTACCCCCGGTTTA
Found at i:75602172 original size:27 final size:26
Alignment explanation
Indices: 75601986--75602570 Score: 203
Period size: 27 Copynumber: 21.7 Consensus size: 26
75601976 TTTAGTTTAC
**
75601986 TAAAATTATCGAAATACCCTTAATTTG
1 TAAAATTA-CGAAATACCCTCGATTTG
75602013 TAAAATTACTGAAATACCCTCGATTTG
1 TAAAATTAC-GAAATACCCTCGATTTG
* * *
75602040 TAAAATTACTGAAATACCTTCAACTTG
1 TAAAATTAC-GAAATACCCTCGATTTG
* * * *
75602067 TAAAATTACCAAAGTACCCCCGGTTTA
1 TAAAATTACGAAA-TACCCTCGATTTG
*
75602094 TAAAATTACTGAAATACCGTCGA-TTG
1 TAAAATTAC-GAAATACCCTCGATTTG
* * *
75602120 TAAAATTACTAAAATGCCCTCAATTTG
1 TAAAATTAC-GAAATACCCTCGATTTG
* * * *
75602147 TAAAATTACCAAAGTACCTTTGATTTA
1 TAAAATTACGAAA-TACCCTCGATTTG
* * *** *
75602174 CAGAATTATCGTTTTACCCTCGATTTA
1 TAAAATTA-CGAAATACCCTCGATTTG
* * * ** *
75602201 CAGAATTACCATTTTACCCTCGATTTA
1 TAAAATTACGA-AATACCCTCGATTTG
* * ** *
75602228 CAAAATTACCATTTTACCCTCGATTTA
1 TAAAATTACGA-AATACCCTCGATTTG
* * * ** *
75602255 TAGAACTACCATTTTACCCTCGATTTA
1 TAAAATTACGA-AATACCCTCGATTTG
*** *
75602282 TAAAATTACCGTTTTACCCTCGATTTA
1 TAAAATTA-CGAAATACCCTCGATTTG
* *** *
75602309 TAGAATTATCGTTTTACCCTCGATTTAC
1 TAAAATTA-CGAAATACCCTCGATTT-G
* * ** * *
75602337 AAAAATAATAAAATACCCTTGGA-TTA
1 TAAAATTACGAAATACCC-TCGATTTG
* * **
75602363 CAAAATTACCAAAATACCCTCGATCAG
1 TAAAATTA-CGAAATACCCTCGATTTG
* *
75602390 TAAAATTACCAAAATACCC-CTGGTTTG
1 TAAAATTA-CGAAATACCCTC-GATTTG
* *
75602417 TAAAATTACTAAAATACCC-CTGGTTTG
1 TAAAATTAC-GAAATACCCTC-GATTTG
* * *
75602444 TAAAATTACCAAAATACCC-CTAGCTTG
1 TAAAATTA-CGAAATACCCTCGA-TTTG
* * *
75602471 TAAAATTACCAAAATACCC-CTAACTTG
1 TAAAATTA-CGAAATACCCTC-GATTTG
*
75602498 TAAAATTACCAAAATACCC-CTGATTTG
1 TAAAATTA-CGAAATACCCTC-GATTTG
* *
75602525 TGAAATTATCGAAATACTCTCGATTTG
1 TAAAATTA-CGAAATACCCTCGATTTG
* *
75602552 TAGAATTATCAAAATACCC
1 TAAAATTA-CGAAATACCC
75602571 CTGTAGGGTA
Statistics
Matches: 457, Mismatches: 83, Indels: 36
0.79 0.14 0.06
Matches are distributed among these distances:
26 40 0.09
27 401 0.88
28 16 0.04
ACGTcount: A:0.37, C:0.21, G:0.09, T:0.33
Consensus pattern (26 bp):
TAAAATTACGAAATACCCTCGATTTG
Found at i:75602194 original size:54 final size:54
Alignment explanation
Indices: 75602168--75602340 Score: 274
Period size: 54 Copynumber: 3.2 Consensus size: 54
75602158 AAGTACCTTT
* * *
75602168 GATTTACAGAATTATCGTTTTACCCTCGATTTACAGAATTACCATTTTACCCTC
1 GATTTACAAAATTACCGTTTTACCCTCGATTTATAGAATTACCATTTTACCCTC
* *
75602222 GATTTACAAAATTACCATTTTACCCTCGATTTATAGAACTACCATTTTACCCTC
1 GATTTACAAAATTACCGTTTTACCCTCGATTTATAGAATTACCATTTTACCCTC
* * *
75602276 GATTTATAAAATTACCGTTTTACCCTCGATTTATAGAATTATCGTTTTACCCTC
1 GATTTACAAAATTACCGTTTTACCCTCGATTTATAGAATTACCATTTTACCCTC
75602330 GATTTACAAAA
1 GATTTACAAAA
75602341 ATAATAAAAT
Statistics
Matches: 108, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
54 108 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.39
Consensus pattern (54 bp):
GATTTACAAAATTACCGTTTTACCCTCGATTTATAGAATTACCATTTTACCCTC
Found at i:75602253 original size:81 final size:81
Alignment explanation
Indices: 75602168--75602337 Score: 241
Period size: 81 Copynumber: 2.1 Consensus size: 81
75602158 AAGTACCTTT
* * * *
75602168 GATTTACAGAATTATCGTTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAAAA
1 GATTTACAGAACTACCATTTTACCCTCGATTTACAAAATTACCATTTTACCCTCGATTTACAAAA
75602233 TTACCATTTTACCCTC
66 TTACCATTTTACCCTC
* * * * *
75602249 GATTTATAGAACTACCATTTTACCCTCGATTTATAAAATTACCGTTTTACCCTCGATTTATAGAA
1 GATTTACAGAACTACCATTTTACCCTCGATTTACAAAATTACCATTTTACCCTCGATTTACAAAA
* *
75602314 TTATCGTTTTACCCTC
66 TTACCATTTTACCCTC
75602330 GATTTACA
1 GATTTACA
75602338 AAAATAATAA
Statistics
Matches: 77, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
81 77 1.00
ACGTcount: A:0.29, C:0.23, G:0.08, T:0.39
Consensus pattern (81 bp):
GATTTACAGAACTACCATTTTACCCTCGATTTACAAAATTACCATTTTACCCTCGATTTACAAAA
TTACCATTTTACCCTC
Found at i:75602404 original size:54 final size:53
Alignment explanation
Indices: 75602346--75602573 Score: 233
Period size: 54 Copynumber: 4.2 Consensus size: 53
75602336 CAAAAATAAT
* ** *
75602346 AAAATACCCTTGGATTACAAAATTACCAAAATACCCTCGATCAGTAAAATTACC
1 AAAATACCCCTGGATTGTAAAATTACCAAAATACCC-CGATCTGTAAAATTACC
* * * *
75602400 AAAATACCCCTGGTTTGTAAAATTACTAAAATACCCCTGGTTTGTAAAATTACC
1 AAAATACCCCTGGATTGTAAAATTACCAAAATACCCC-GATCTGTAAAATTACC
* * * *
75602454 AAAATACCCCTAGCTTGTAAAATTACCAAAATACCCCTAACTTGTAAAATTACC
1 AAAATACCCCTGGATTGTAAAATTACCAAAATACCCCGATC-TGTAAAATTACC
* * * * * * *
75602508 AAAATACCCCT-GATTTGTGAAATTATCGAAATACTCTCGATTTGTAGAATTATC
1 AAAATACCCCTGGA-TTGTAAAATTACCAAAATAC-CCCGATCTGTAAAATTACC
75602562 AAAATACCCCTG
1 AAAATACCCCTG
75602574 TAGGGTAGAA
Statistics
Matches: 144, Mismatches: 25, Indels: 9
0.81 0.14 0.05
Matches are distributed among these distances:
53 2 0.01
54 139 0.97
55 3 0.02
ACGTcount: A:0.40, C:0.22, G:0.09, T:0.29
Consensus pattern (53 bp):
AAAATACCCCTGGATTGTAAAATTACCAAAATACCCCGATCTGTAAAATTACC
Found at i:75602499 original size:81 final size:80
Alignment explanation
Indices: 75602345--75602572 Score: 267
Period size: 81 Copynumber: 2.8 Consensus size: 80
75602335 ACAAAAATAA
* * ** *
75602345 TAAAATACCCTTGGATTACAAAATTACCAAAATACCCTCGATCAGTAAAATTACCAAAATACCCC
1 TAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTCGAT-TGTAAAATTACCAAAATACCCC
***
75602410 TGGTTTGTAAAATTAC
65 TAACTTGTAAAATTAC
* *
75602426 TAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTAGCTTGTAAAATTACCAAAATACCCC
1 TAAAATACCCCTGGTTTGTAAAATTACCAAAATA-CCCTCGATTGTAAAATTACCAAAATACCCC
75602491 TAACTTGTAAAATTAC
65 TAACTTGTAAAATTAC
* * * * * * * *
75602507 CAAAATACCCCTGATTTGTGAAATTATCGAAATACTCTCGATTTGTAGAATTATCAAAATACCCC
1 TAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTCGA-TTGTAAAATTACCAAAATACCCC
75602572 T
65 T
75602573 GTAGGGTAGA
Statistics
Matches: 125, Mismatches: 20, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
80 4 0.03
81 115 0.92
82 6 0.05
ACGTcount: A:0.40, C:0.22, G:0.09, T:0.29
Consensus pattern (80 bp):
TAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTCGATTGTAAAATTACCAAAATACCCCT
AACTTGTAAAATTAC
Found at i:75602581 original size:27 final size:27
Alignment explanation
Indices: 75602551--75602775 Score: 283
Period size: 27 Copynumber: 8.3 Consensus size: 27
75602541 CTCTCGATTT
*
75602551 GTAGAATTATCAAAATACCCCTGTAGG
1 GTAGAATTATCGAAATACCCCTGTAGG
75602578 GTAGAATTATCGAAATACCCCTGTAGG
1 GTAGAATTATCGAAATACCCCTGTAGG
* *
75602605 GTAGAATTA-CTAAAATAACCCTGTAGG
1 GTAGAATTATC-GAAATACCCCTGTAGG
* * *
75602632 GTAAAATTACCGAAATACCCCTGTAAG
1 GTAGAATTATCGAAATACCCCTGTAGG
75602659 GTAGAATTA-CTGAAATACCCCTGTAGG
1 GTAGAATTATC-GAAATACCCCTGTAGG
* *
75602686 GTAGAATTACCGAAATACCCTTGTAGG
1 GTAGAATTATCGAAATACCCCTGTAGG
* * *
75602713 GTAGAAATATTGAAATACCCCTATAGG
1 GTAGAATTATCGAAATACCCCTGTAGG
* * *
75602740 GTAGAATTATCGAGATACCCTTGTGGG
1 GTAGAATTATCGAAATACCCCTGTAGG
*
75602767 GTAAAATTA
1 GTAGAATTA
75602776 CCATTTTGCC
Statistics
Matches: 172, Mismatches: 22, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
26 2 0.01
27 168 0.98
28 2 0.01
ACGTcount: A:0.36, C:0.17, G:0.20, T:0.26
Consensus pattern (27 bp):
GTAGAATTATCGAAATACCCCTGTAGG
Found at i:75602586 original size:81 final size:80
Alignment explanation
Indices: 75602364--75602600 Score: 253
Period size: 81 Copynumber: 2.9 Consensus size: 80
75602354 CTTGGATTAC
** *
75602364 AAAATTACCAAAATACCCTCGATCAGTAAAATTACCAAAATACCCCTGGT-TTGTAAAATTACTA
1 AAAATTACCAAAATA-CCTCGATTTGTAAAATTACCAAAATACCCCT-GTATTGTAAAATTACCA
*
75602428 AAATACCCCTGGTTTGT
64 AAATACCCCTGATTTGT
* * * *
75602445 AAAATTACCAAAATACCCCTAGCTTGTAAAATTACCAAAATACCCCT-AACTTGTAAAATTACCA
1 AAAATTACCAAAATACCTCGA-TTTGTAAAATTACCAAAATACCCCTGTA-TTGTAAAATTACCA
75602509 AAATACCCCTGATTTGT
64 AAATACCCCTGATTTGT
* * * * * ** * * *
75602526 GAAATTATCGAAATACTCTCGATTTGTAGAATTATCAAAATACCCCTGTAGGGTAGAATTATCGA
1 AAAATTACCAAAATAC-CTCGATTTGTAAAATTACCAAAATACCCCTGTATTGTAAAATTACCAA
75602591 AATACCCCTG
65 AATACCCCTG
75602601 TAGGGTAGAA
Statistics
Matches: 129, Mismatches: 22, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
80 4 0.03
81 121 0.94
82 4 0.03
ACGTcount: A:0.39, C:0.22, G:0.11, T:0.28
Consensus pattern (80 bp):
AAAATTACCAAAATACCTCGATTTGTAAAATTACCAAAATACCCCTGTATTGTAAAATTACCAAA
ATACCCCTGATTTGT
Found at i:75603015 original size:25 final size:25
Alignment explanation
Indices: 75602982--75603051 Score: 122
Period size: 25 Copynumber: 2.8 Consensus size: 25
75602972 AGGAAGTGCT
*
75602982 AAAAGGGCTTTACCCCAGTTTACCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
*
75603007 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
75603032 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
75603052 ACTAAAAGAG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 43 1.00
ACGTcount: A:0.29, C:0.26, G:0.20, T:0.26
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCA
Found at i:75603075 original size:50 final size:50
Alignment explanation
Indices: 75602982--75603076 Score: 113
Period size: 50 Copynumber: 1.9 Consensus size: 50
75602972 AGGAAGTGCT
* **
75602982 AAAAGGGCTTTACCCCAGTTTACCAAAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTACCCCAGTTTACCAAAAAGGGATAGGCCCCAGTTTATCA
* *
75603032 AAAAGGGCTTTGCCCCAG-TTA-CTAAAAGAGGATAGGCCTCCAGTT
1 AAAAGGGCTTTACCCCAGTTTACCAAAAAG-GGATAGGCC-CCAGTT
75603077 ATATGATAAA
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
48 6 0.16
49 9 0.24
50 23 0.61
ACGTcount: A:0.31, C:0.24, G:0.21, T:0.24
Consensus pattern (50 bp):
AAAAGGGCTTTACCCCAGTTTACCAAAAAGGGATAGGCCCCAGTTTATCA
Found at i:75618131 original size:13 final size:13
Alignment explanation
Indices: 75618109--75618140 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
75618099 AGTGACTATT
*
75618109 GATTTTGTTAGTG
1 GATTTCGTTAGTG
75618122 GATTTCGTTAGTG
1 GATTTCGTTAGTG
75618135 GATTTC
1 GATTTC
75618141 CCCTAACAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.16, C:0.06, G:0.28, T:0.50
Consensus pattern (13 bp):
GATTTCGTTAGTG
Found at i:75620634 original size:35 final size:35
Alignment explanation
Indices: 75620560--75620635 Score: 98
Period size: 35 Copynumber: 2.2 Consensus size: 35
75620550 TCTGTAATGT
* *
75620560 ATCTATATCTGAAATGGGCTCAGGCCCAAATCTGT
1 ATCTGTATCTGAAATGGGCTCAGGCCCAAATCTGA
* * * *
75620595 ATCTGTATCTGACATGGGCTCAGGCCCGATTGTGA
1 ATCTGTATCTGAAATGGGCTCAGGCCCAAATCTGA
75620630 ATCTGT
1 ATCTGT
75620636 CTAACATGTG
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.24, C:0.22, G:0.24, T:0.30
Consensus pattern (35 bp):
ATCTGTATCTGAAATGGGCTCAGGCCCAAATCTGA
Found at i:75624432 original size:16 final size:16
Alignment explanation
Indices: 75624411--75624446 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
75624401 AGGTGGGGGC
*
75624411 AAATCTAAAAAGTCAT
1 AAATCTAAAAAGGCAT
75624427 AAATCTAAAAAGGCAT
1 AAATCTAAAAAGGCAT
75624443 AAAT
1 AAAT
75624447 AATCAGCCAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.58, C:0.11, G:0.08, T:0.22
Consensus pattern (16 bp):
AAATCTAAAAAGGCAT
Found at i:75625229 original size:44 final size:44
Alignment explanation
Indices: 75625165--75625257 Score: 150
Period size: 44 Copynumber: 2.1 Consensus size: 44
75625155 GCTTCCAAAC
75625165 AAAGACACGTTAAATCCCTACCAATTTGATTTTATTCCCATATT
1 AAAGACACGTTAAATCCCTACCAATTTGATTTTATTCCCATATT
* * * *
75625209 CAAGACATGTTAAGTCCCTACCAATTTGATTTTATTCCCTTATT
1 AAAGACACGTTAAATCCCTACCAATTTGATTTTATTCCCATATT
75625253 AAAGA
1 AAAGA
75625258 TTAAGTTGCA
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
44 44 1.00
ACGTcount: A:0.33, C:0.22, G:0.09, T:0.37
Consensus pattern (44 bp):
AAAGACACGTTAAATCCCTACCAATTTGATTTTATTCCCATATT
Found at i:75645787 original size:21 final size:21
Alignment explanation
Indices: 75645761--75645818 Score: 73
Period size: 21 Copynumber: 2.8 Consensus size: 21
75645751 TTCAATGCAA
75645761 GAAGGG-GCACACACCCGTGTG
1 GAAGGGTG-ACACACCCGTGTG
** *
75645782 GAAGGGTGACATGCCTGTGTG
1 GAAGGGTGACACACCCGTGTG
75645803 GAAGGGTGACACACCC
1 GAAGGGTGACACACCC
75645819 CTGTTTCCTC
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
21 29 0.97
22 1 0.03
ACGTcount: A:0.24, C:0.24, G:0.38, T:0.14
Consensus pattern (21 bp):
GAAGGGTGACACACCCGTGTG
Found at i:75647204 original size:48 final size:48
Alignment explanation
Indices: 75647130--75647360 Score: 252
Period size: 48 Copynumber: 4.8 Consensus size: 48
75647120 TAAGTTGCCA
* * * *
75647130 ATGCCACGTCCCAGACATGGTTTTACACTGGCTCACAT-GTCGAGGTCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAAT-GAGGCCG
* * *
75647178 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGACCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAATGAGGCCG
* * * *
75647226 ATGCCATGTCCCAAACATGGTCTTACACTAGCAT-ACAT-ATCAACGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGC-TCACATAAT-GAGGCCG
* * *
75647274 ATGCCATGTCCCGGACATGGTCTTACACTGGCTCTCATAATGTGGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAATGAGGCCG
* * * *
75647322 ATGCCATGCCCCAGACATGGTATTACACTAGCACACATA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATA
75647361 TCAACCAAAT
Statistics
Matches: 151, Mismatches: 27, Indels: 10
0.80 0.14 0.05
Matches are distributed among these distances:
47 3 0.02
48 144 0.95
49 4 0.03
ACGTcount: A:0.25, C:0.30, G:0.20, T:0.25
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAATGAGGCCG
Found at i:75647294 original size:96 final size:96
Alignment explanation
Indices: 75647130--75647365 Score: 339
Period size: 96 Copynumber: 2.5 Consensus size: 96
75647120 TAAGTTGCCA
* * * * * * *
75647130 ATGCCACGTCCCAGACATGGTTTTACACTGGC-TCACATGTCGAGGTCGATGCCATGTCCCAGAC
1 ATGCCATGTCCCAGACATGGTATTACACTAGCAT-ACATATCAACGCCGATGCCATGTCCCAGAC
75647194 ATGGTCTTACACTGGCTCTCATAATGTGACCG
65 ATGGTCTTACACTGGCTCTCATAATGTGACCG
* * *
75647226 ATGCCATGTCCCAAACATGGTCTTACACTAGCATACATATCAACGCCGATGCCATGTCCCGGACA
1 ATGCCATGTCCCAGACATGGTATTACACTAGCATACATATCAACGCCGATGCCATGTCCCAGACA
*
75647291 TGGTCTTACACTGGCTCTCATAATGTGGCCG
66 TGGTCTTACACTGGCTCTCATAATGTGACCG
* *
75647322 ATGCCATGCCCCAGACATGGTATTACACTAGCACACATATCAAC
1 ATGCCATGTCCCAGACATGGTATTACACTAGCATACATATCAAC
75647366 CAAATGTCAC
Statistics
Matches: 125, Mismatches: 14, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
96 124 0.99
97 1 0.01
ACGTcount: A:0.25, C:0.30, G:0.20, T:0.25
Consensus pattern (96 bp):
ATGCCATGTCCCAGACATGGTATTACACTAGCATACATATCAACGCCGATGCCATGTCCCAGACA
TGGTCTTACACTGGCTCTCATAATGTGACCG
Found at i:75653027 original size:44 final size:44
Alignment explanation
Indices: 75652960--75653121 Score: 133
Period size: 42 Copynumber: 3.8 Consensus size: 44
75652950 TCGATAAGTG
**
75652960 TTTTCGTGTAAGACCACATCTGGGACGTTGGCATCGACT-TCT-A
1 TTTTCGTGTAAGACCATGTCTGGGACGTTGGCATCGA-TATCTGA
* * *
75653003 TTTTACGTGTAAGACCATGTCTGGGACATCGACATCG-TATCTGA
1 TTTT-CGTGTAAGACCATGTCTGGGACGTTGGCATCGATATCTGA
* * *
75653047 -TTTCGTGTAAGACCCTGTCTGGGACAG-TGGCATCGATGTTTGA
1 TTTTCGTGTAAGACCATGTCTGGGAC-GTTGGCATCGATATCTGA
* * *
75653090 --TTCAATATAAGACCATGTTTGGGA-GTTGGCAT
1 TTTTC-GTGTAAGACCATGTCTGGGACGTTGGCAT
75653122 TGTATATGCT
Statistics
Matches: 97, Mismatches: 15, Indels: 15
0.76 0.12 0.12
Matches are distributed among these distances:
41 1 0.01
42 37 0.38
43 31 0.32
44 28 0.29
ACGTcount: A:0.23, C:0.19, G:0.25, T:0.33
Consensus pattern (44 bp):
TTTTCGTGTAAGACCATGTCTGGGACGTTGGCATCGATATCTGA
Found at i:75653575 original size:10 final size:10
Alignment explanation
Indices: 75653560--75653587 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
75653550 TATCGAACTT
75653560 CATTTTGGTA
1 CATTTTGGTA
75653570 CATTTTGGTA
1 CATTTTGGTA
75653580 CATTTTGG
1 CATTTTGG
75653588 AAATGTAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.18, C:0.11, G:0.21, T:0.50
Consensus pattern (10 bp):
CATTTTGGTA
Found at i:75662628 original size:20 final size:21
Alignment explanation
Indices: 75662603--75662642 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
75662593 TCTTAGAAAC
75662603 AGGGC-ACACGCCCGTGTGGA
1 AGGGCAACACGCCCGTGTGGA
*
75662623 AGGGCAATACGCCCGTGTGG
1 AGGGCAACACGCCCGTGTGG
75662643 CCAATTCGAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.20, C:0.28, G:0.40, T:0.12
Consensus pattern (21 bp):
AGGGCAACACGCCCGTGTGGA
Found at i:75663922 original size:46 final size:46
Alignment explanation
Indices: 75663796--75664007 Score: 127
Period size: 46 Copynumber: 4.6 Consensus size: 46
75663786 ATGCTGATGC
*
75663796 CATGTCCCAGACATGGTCTTACACT-GACAC-A-TCTCGTAGCCGATG
1 CATGTCCCAGACAT-GTCTTACACTAG-CACTAGTCTCGTAGCCGATA
* *
75663841 CACGTCCCAGACATGTCTTACACTTA-C-TTATGTCTCG-AGGCCGATA
1 CATGTCCCAGACATGTCTTACAC-TAGCACTA-GTCTCGTA-GCCGATA
* * * **
75663887 CATGTCCCAGACCTGTTTTACACTAGCACTAGTCTC-AATGCCGACGC
1 CATGTCCCAGACATGTCTTACACTAGCACTAGTCTCGTA-GCCGA-TA
* * ** * * * *
75663934 CATGTCCCAAACATGGTCTTACACTGGCTTTCA-TAAT-GTGGCTGATG
1 CATGTCCCAGACAT-GTCTTACACTAGCACT-AGT-CTCGTAGCCGATA
75663981 CATGTCCCAGACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
75664008 TCACACAAGT
Statistics
Matches: 129, Mismatches: 24, Indels: 27
0.72 0.13 0.15
Matches are distributed among these distances:
44 11 0.09
45 17 0.13
46 55 0.43
47 27 0.21
48 17 0.13
49 2 0.02
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.27
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTAGCACTAGTCTCGTAGCCGATA
Found at i:75670205 original size:49 final size:47
Alignment explanation
Indices: 75669984--75670547 Score: 795
Period size: 47 Copynumber: 11.6 Consensus size: 47
75669974 CCCTTCGGGA
* * * * *
75669984 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
75670031 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
75670078 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
75670125 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTTGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
75670172 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
75670221 CTTATCACATATATACACTTTCACATTCATCATATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
75670268 CTTATCACATATATACACTATCACATTTATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
75670315 CTTATCACATATATATACACTTTCACATTCATCATATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
75670364 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
75670413 CTTATCACATATATATACACTTTACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC----ATAT--A---TACACTTTCACATTCATCACATCGGCCATTAGGC
*
75670469 CTTATCACATATATATACACTTTCACATTCATCATATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
75670518 CTTATCACATATATACACTTTCACATTCAT
1 CTTATCACATATATACACTTTCACATTCAT
75670548 TCAAATATAC
Statistics
Matches: 477, Mismatches: 29, Indels: 22
0.90 0.05 0.04
Matches are distributed among these distances:
47 247 0.52
49 174 0.36
51 6 0.01
52 1 0.00
53 1 0.00
54 6 0.01
56 42 0.09
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:75670240 original size:143 final size:143
Alignment explanation
Indices: 75669984--75670547 Score: 844
Period size: 143 Copynumber: 3.9 Consensus size: 143
75669974 CCCTTCGGGA
* * * * * *
75669984 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCATTCGGCCCTGTCAC--ATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATATAC
75670047 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
75670112 TCGGCCATTAGGC
131 TCGGCCATTAGGC
*
75670125 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTTGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATATAC
* * *
75670190 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCATA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
*
75670255 TCGGCTATTAGGC
131 TCGGCCATTAGGC
* * *
75670268 CTTATCACATATATACACTATCACATTTATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATATAC
*
75670333 ACTTTCACATTCATCATATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCA
* *
75670398 CATTGGCCATTCGGC
129 CATCGGCCATTAGGC
*
75670413 CTTATCACATATATATACACTTTACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACA
1 CTTATCAC----ATAT--A---TACACTTTCACATTCATCACATCGGCCATTCGGCCTTATCACA
*
75670478 TATATATACACTTTCACATTCATCATATCGGCCATTAGGCCTTATCACATATATACACTTTCACA
57 TATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACA
75670543 TTCAT
122 TTCAT
75670548 TCAAATATAC
Statistics
Matches: 385, Mismatches: 25, Indels: 15
0.91 0.06 0.04
Matches are distributed among these distances:
141 48 0.12
143 180 0.47
145 43 0.11
149 4 0.01
151 1 0.00
152 22 0.06
154 87 0.23
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.34
Consensus pattern (143 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
TCGGCCATTAGGC
Found at i:75670486 original size:105 final size:100
Alignment explanation
Indices: 75669984--75670547 Score: 735
Period size: 96 Copynumber: 5.8 Consensus size: 100
75669974 CCCTTCGGGA
* * * * * *
75669984 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCATTCGGCCCTGTCAC----ATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
*
75670043 ATACACTTTCACATTCATCACATCGGCCATTAGGC
66 ATACACTTTCACATTCATCATATCGGCCATTAGGC
75670078 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC----ATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
* *
75670137 ATACACTTTCACATTCATCACATCGGCCATTTGGC
66 ATACACTTTCACATTCATCATATCGGCCATTAGGC
* *
75670172 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCAC----ATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
*
75670233 ATACACTTTCACATTCATCATATCGGCTATTAGGC
66 ATACACTTTCACATTCATCATATCGGCCATTAGGC
* *
75670268 CTTATCAC--ATATATACACTATCACATTTATCACATCGGCCATTAGGCCTTATCAC--ATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
75670329 ATACACTTTCACATTCATCATATCGGCCATTAGGC
66 ATACACTTTCACATTCATCATATCGGCCATTAGGC
* *
75670364 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
* * *
75670429 ACACTTTACACTTTCACATTCATCACATTGGCCATTCGGC
66 --A---TACACTTTCACATTCATCATATCGGCCATTAGGC
*
75670469 CTTATCACATATATATACACTTTCACATTCATCATATCGGCCATTAGGCCTTATCAC----ATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
75670530 ATACACTTTCACATTCAT
66 ATACACTTTCACATTCAT
75670548 TCAAATATAC
Statistics
Matches: 428, Mismatches: 27, Indels: 28
0.89 0.06 0.06
Matches are distributed among these distances:
93 1 0.00
94 135 0.32
96 152 0.36
98 43 0.10
99 1 0.00
100 6 0.01
101 4 0.01
102 1 0.00
105 85 0.20
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.34
Consensus pattern (100 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
ATACACTTTCACATTCATCATATCGGCCATTAGGC
Found at i:75670580 original size:105 final size:104
Alignment explanation
Indices: 75670268--75670546 Score: 294
Period size: 105 Copynumber: 2.8 Consensus size: 104
75670258 GCTATTAGGC
* *
75670268 CTTATCAC--ATATATACACTATCACATTTATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA-ATATAT
* * * * *
75670331 ACACTTT-CACATTC--A-TCAT---ATCGGCCATTA-GGC
65 ACACTTTACACATTCAAATTCATCACATTGACCA-CACAGA
* *
75670364 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA-ATATAT
* * * ** * *
75670429 ACACTTTACACTTTCACATTCATCACATTGGCCATTCGGC
65 ACACTTTACACATTCAAATTCATCACATTGACCACACAGA
*
75670469 CTTATCACATATATATACACTTTCACATTCATCATATCGGCCATTAGGCCTTATCAC-ATATATA
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATA
75670533 CACTTT-CACATTCA
66 CACTTTACACATTCA
75670547 TTCAAATATA
Statistics
Matches: 162, Mismatches: 11, Indels: 14
0.87 0.06 0.07
Matches are distributed among these distances:
96 8 0.05
98 58 0.36
99 6 0.04
101 1 0.01
102 11 0.07
103 13 0.08
104 1 0.01
105 64 0.40
ACGTcount: A:0.30, C:0.28, G:0.07, T:0.35
Consensus pattern (104 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATA
CACTTTACACATTCAAATTCATCACATTGACCACACAGA
Found at i:75674442 original size:40 final size:40
Alignment explanation
Indices: 75674416--75674681 Score: 424
Period size: 40 Copynumber: 6.7 Consensus size: 40
75674406 TGATTACTCT
* * * *
75674416 TCGGGACCTAGCCCGGATATAACACCAGCACGAATGCTCT
1 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
* ** * *
75674456 TTGGGTTTTAGCACGGATATATCACTAGCACGAATGCTCT
1 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
* *
75674496 TCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCC
1 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
75674536 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
1 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
*
75674576 TCGGGACTTAGCCCGGATATACCACTAGCACGAATGCTCC
1 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
75674616 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
1 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
75674656 TCGGGACTTAGCCCGGATATATCACT
1 TCGGGACTTAGCCCGGATATATCACT
75674682 CTCAATTCTC
Statistics
Matches: 208, Mismatches: 18, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 208 1.00
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (40 bp):
TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
Found at i:75676319 original size:49 final size:49
Alignment explanation
Indices: 75676098--75676661 Score: 760
Period size: 47 Copynumber: 11.7 Consensus size: 49
75676088 CCCTTCGGGA
* * * * *
75676098 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
75676145 CCTGTCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
75676192 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCTATTAAGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
75676239 CTTA-C-CACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
75676286 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
75676335 CTTATCAC--ATATATACACTTTCACATTCATCATATCGGCTATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
75676382 CTTATCAC--ATATATGCACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
75676429 CTTATCACATATATATACACTTTCACATTCATCATATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
75676478 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
** *
75676527 CTTATCACATATATATACACTTTACACTTTCACATTCATCACATTAGCCATTCGGC
1 CTTATCAC--ATATAT--A---TACACTTTCACATTCATCACATCGGCCATTAGGC
*
75676583 CTTATCACATATATATACACTTTCACATTCATCATATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
75676632 CTTATCAC--ATATATACACTTTCACATTCAT
1 CTTATCACATATATATACACTTTCACATTCAT
75676662 TGAAATATAC
Statistics
Matches: 467, Mismatches: 35, Indels: 30
0.88 0.07 0.06
Matches are distributed among these distances:
45 1 0.00
46 2 0.00
47 232 0.50
48 1 0.00
49 176 0.38
51 6 0.01
52 1 0.00
53 1 0.00
54 6 0.01
56 41 0.09
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.34
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:75676359 original size:143 final size:143
Alignment explanation
Indices: 75676098--75676661 Score: 799
Period size: 143 Copynumber: 3.9 Consensus size: 143
75676088 CCCTTCGGGA
* * * * * * * * *
75676098 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCAC--ATATATAC
1 CTTACCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
75676161 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
*
75676226 TTGGCTATTAAGC
131 TTGGCTATTAGGC
75676239 CTTACCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTACCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
* * *
75676304 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCATA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
*
75676369 TCGGCTATTAGGC
131 TTGGCTATTAGGC
* *
75676382 CTTATCACATATATGCACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTACCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
*
75676447 ACTTTCACATTCATCATATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCA
* *
75676512 CATTGGCCATTCGGC
129 CATTGGCTATTAGGC
* ** *
75676527 CTTATCACATATATATACACTTTACACTTTCACATTCATCACATTAGCCATTCGGCCTTATCACA
1 CTTA-C-C--ACATAT--A---TACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA
*
75676592 TATATATACACTTTCACATTCATCATATCGGCCATTAGGCCTTATCACATATATACACTTTCACA
57 TATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACA
75676657 TTCAT
122 TTCAT
75676662 TGAAATATAC
Statistics
Matches: 381, Mismatches: 29, Indels: 15
0.90 0.07 0.04
Matches are distributed among these distances:
141 46 0.12
143 180 0.47
145 39 0.10
147 1 0.00
149 5 0.01
151 1 0.00
152 22 0.06
154 87 0.23
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.34
Consensus pattern (143 bp):
CTTACCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
TTGGCTATTAGGC
Found at i:75676612 original size:105 final size:100
Alignment explanation
Indices: 75676098--75676661 Score: 699
Period size: 96 Copynumber: 5.8 Consensus size: 100
75676088 CCCTTCGGGA
* * * * * * *
75676098 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCAC----ATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
*
75676157 ATACACTTTCACATTCATCACATCGGCCATTAGGC
66 ATACACTTTCACATTCATCATATCGGCCATTAGGC
* * * *
75676192 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCTATTAAGCCTTA-C-C--ACATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
*
75676251 ATACACTTTCACATTCATCACATCGGCCATTAGGC
66 ATACACTTTCACATTCATCATATCGGCCATTAGGC
* *
75676286 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCAC----ATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
*
75676347 ATACACTTTCACATTCATCATATCGGCTATTAGGC
66 ATACACTTTCACATTCATCATATCGGCCATTAGGC
*
75676382 CTTATCAC--ATATATGCACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
75676443 ATACACTTTCACATTCATCATATCGGCCATTAGGC
66 ATACACTTTCACATTCATCATATCGGCCATTAGGC
* *
75676478 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
* ** *
75676543 ACACTTTACACTTTCACATTCATCACATTAGCCATTCGGC
66 --A---TACACTTTCACATTCATCATATCGGCCATTAGGC
*
75676583 CTTATCACATATATATACACTTTCACATTCATCATATCGGCCATTAGGCCTTATCAC----ATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
75676644 ATACACTTTCACATTCAT
66 ATACACTTTCACATTCAT
75676662 TGAAATATAC
Statistics
Matches: 424, Mismatches: 27, Indels: 36
0.87 0.06 0.07
Matches are distributed among these distances:
92 1 0.00
93 2 0.00
94 131 0.31
96 148 0.35
97 1 0.00
98 45 0.11
99 1 0.00
100 6 0.01
101 4 0.01
102 1 0.00
105 84 0.20
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.34
Consensus pattern (100 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
ATACACTTTCACATTCATCATATCGGCCATTAGGC
Found at i:75676694 original size:105 final size:102
Alignment explanation
Indices: 75676382--75676660 Score: 319
Period size: 105 Copynumber: 2.8 Consensus size: 102
75676372 GCTATTAGGC
*
75676382 CTTATCAC--ATATATGCACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA-ATATAT
*** *
75676445 ACACTTT-CACATTC--A-TCAT---ATCGGCCATTAGGC
65 ACACTTTACACATTCAAATTCATCACATTACCCATT--GA
* *
75676478 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA-ATATAT
* * * *
75676543 ACACTTTACACTTTCACATTCATCACATTAGCCATTCGGC
65 ACACTTTACACATTCAAATTCATCACATTACCCATT--GA
*
75676583 CTTATCACATATATATACACTTTCACATTCATCATATCGGCCATTAGGCCTTATCAC-ATATATA
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATA
75676647 CACTTT-CACATTCA
66 CACTTTACACATTCA
75676661 TTGAAATATA
Statistics
Matches: 163, Mismatches: 11, Indels: 12
0.88 0.06 0.06
Matches are distributed among these distances:
96 8 0.05
98 59 0.36
99 6 0.04
101 1 0.01
102 11 0.07
103 13 0.08
105 65 0.40
ACGTcount: A:0.30, C:0.28, G:0.07, T:0.35
Consensus pattern (102 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATA
CACTTTACACATTCAAATTCATCACATTACCCATTGA
Found at i:75688747 original size:68 final size:66
Alignment explanation
Indices: 75688675--75688846 Score: 170
Period size: 67 Copynumber: 2.6 Consensus size: 66
75688665 CATCATGTGT
* * * *
75688675 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTA-TG-TGTACACCA
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCA
75688738 TGTAG
62 TGTAG
** * *
75688743 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCA-GTGAAGGACACCATGT
75688808 AG
65 AG
* * * *
75688810 ACAAGAGAGCTACGAGATAAAT-TGGCTAGGTCACATG
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATG
75688847 GGTGGTACTG
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
64 24 0.27
65 3 0.03
66 17 0.19
67 32 0.36
68 13 0.15
ACGTcount: A:0.32, C:0.17, G:0.29, T:0.22
Consensus pattern (66 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCATGTA
G
Found at i:75688780 original size:64 final size:64
Alignment explanation
Indices: 75688699--75688882 Score: 203
Period size: 67 Copynumber: 2.8 Consensus size: 64
75688689 AGACATTATG
* * *
75688699 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
75688763 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
75688828 AA
63 AA
* * *
75688830 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGC
75688883 CGAACTATAT
Statistics
Matches: 99, Mismatches: 16, Indels: 11
0.79 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 25 0.25
66 21 0.21
67 33 0.33
ACGTcount: A:0.29, C:0.17, G:0.31, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:75690752 original size:47 final size:45
Alignment explanation
Indices: 75690698--75690830 Score: 126
Period size: 47 Copynumber: 2.9 Consensus size: 45
75690688 CGAAAATAAT
*
75690698 GCATGTCCCAGACATGTCTTACACTAGCACTCGTGTCAA-T-GCCGAC
1 GCATGTCCCAGACATGTCTTACACTAGCACTC--AT-AAGTGGCCGAC
* * * * *
75690744 GCCATGTCCCAAACATGGTCTCACACTGGCTCTCATAATGTGGCCGAT
1 G-CATGTCCCAGACAT-GTCTTACACTAGCACTCATAA-GTGGCCGAC
* *
75690792 GCATGTCCCAGACATGTCTTACACTAGCTCACATAAGTG
1 GCATGTCCCAGACATGTCTTACACTAGCACTCATAAGTG
75690831 ACCCCAAACG
Statistics
Matches: 72, Mismatches: 10, Indels: 11
0.77 0.11 0.12
Matches are distributed among these distances:
45 5 0.07
46 20 0.28
47 27 0.38
48 20 0.28
ACGTcount: A:0.25, C:0.31, G:0.20, T:0.25
Consensus pattern (45 bp):
GCATGTCCCAGACATGTCTTACACTAGCACTCATAAGTGGCCGAC
Found at i:75700653 original size:39 final size:40
Alignment explanation
Indices: 75700562--75700780 Score: 258
Period size: 39 Copynumber: 5.5 Consensus size: 40
75700552 ATGATGTCCA
*
75700562 GGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AATATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT-TCCG
*
75700601 GACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAATTCCG
1 GGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAATTCCG
75700641 GGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAATTCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATTCCG
* *
75700680 GGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATTCCG
* *
75700719 GGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-ATAACCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT-TCCG
*
75700759 GGCTATGTCCCGAAGGCATTTG
1 GGCTAAGTCCCGAAGGCATTTG
75700781 AACGAGGAGC
Statistics
Matches: 160, Mismatches: 11, Indels: 17
0.85 0.06 0.09
Matches are distributed among these distances:
39 89 0.56
40 59 0.37
41 11 0.07
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
GGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATTCCG
Found at i:75700695 original size:78 final size:80
Alignment explanation
Indices: 75700562--75700780 Score: 263
Period size: 79 Copynumber: 2.8 Consensus size: 80
75700552 ATGATGTCCA
* * * * *
75700562 GGCTAAGTCCCGAAGGC--TTGTGCTAAGTGACAATATCCGGACTAAGAT-CCGAAGGCATTTGT
1 GGCTAAGTCCCGAAGGCATTTGTGCGAA-TTACTATAACCGGGCTAAG-TCCCGAAGGCATTTGT
*
75700624 GCGAGATACTAATTCCG
64 GCGAGATACTAAATCCG
*
75700641 GGCTAAG-CCCGAAGGCATTTGTGCGAGA-TACTA-ATTCCGGGCTAAG-CCCGAAGGCATTTGT
1 GGCTAAGTCCCGAAGGCATTTGTGCGA-ATTACTATA-ACCGGGCTAAGTCCCGAAGGCATTTGT
*
75700702 GCGAGTTACTAAATCCG
64 GCGAGATACTAAATCCG
* *
75700719 GGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAACCGGGCTATGTCCCGAAGGCATTTG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAATTACTATAACCGGGCTAAGTCCCGAAGGCATTTG
75700781 AACGAGGAGC
Statistics
Matches: 122, Mismatches: 9, Indels: 17
0.82 0.06 0.11
Matches are distributed among these distances:
78 46 0.38
79 53 0.43
80 22 0.18
81 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (80 bp):
GGCTAAGTCCCGAAGGCATTTGTGCGAATTACTATAACCGGGCTAAGTCCCGAAGGCATTTGTGC
GAGATACTAAATCCG
Found at i:75700802 original size:79 final size:79
Alignment explanation
Indices: 75700610--75700813 Score: 213
Period size: 79 Copynumber: 2.6 Consensus size: 79
75700600 GGACTAAGAT
** * *
75700610 CCGAAGGCATTTGTGCGAGAT-ACTAATTCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACT
1 CCGAAGGCATTTGAACGAG-TGACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACT
*
75700673 AATTCCGGGCTAAGC
65 AATACCGGGCTAAGC
** *
75700688 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT
1 CCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-TACT
*
75700752 -ATAACCGGGCTATGTC
65 AAT-ACCGGGCTAAG-C
* * *
75700768 CCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATTCCGAAGG
1 CCGAAGGCATTTGAACGAGTGA-CTAAATCCGGGTTAAGTCCCGAAGG
75700814 TACGTGATTT
Statistics
Matches: 110, Mismatches: 10, Indels: 11
0.84 0.08 0.08
Matches are distributed among these distances:
77 1 0.01
78 37 0.34
79 47 0.43
80 25 0.23
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTA
ATACCGGGCTAAGC
Found at i:75703622 original size:44 final size:42
Alignment explanation
Indices: 75703571--75703668 Score: 135
Period size: 44 Copynumber: 2.3 Consensus size: 42
75703561 ATATGTGTTC
* *
75703571 TCGTGTAAGACCACGTCTGGGACGTTGGCATCG-ACTTATGATT
1 TCGTGTAAGACCACGCCTGGGACATTGGCATCGTA-TT-TGATT
*
75703614 TACGTGTAAGACCATGCCTGGGACATTGGCATCGTATTTGATT
1 T-CGTGTAAGACCACGCCTGGGACATTGGCATCGTATTTGATT
75703657 TCGTGTAAGACC
1 TCGTGTAAGACC
75703669 CTATCTGGGA
Statistics
Matches: 50, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
42 11 0.22
43 7 0.14
44 31 0.62
45 1 0.02
ACGTcount: A:0.22, C:0.20, G:0.27, T:0.31
Consensus pattern (42 bp):
TCGTGTAAGACCACGCCTGGGACATTGGCATCGTATTTGATT
Found at i:75706153 original size:29 final size:30
Alignment explanation
Indices: 75706082--75706193 Score: 117
Period size: 29 Copynumber: 3.9 Consensus size: 30
75706072 ACCCCTACAT
*
75706082 ACATGCATATGGCCCA-CTAGGCCCAA-TC
1 ACATTCATATGGCCCATCTAGGCCCAATTC
** * *
75706110 TTATTCAAATGGCCCATCT-GGCCCAGTTC
1 ACATTCATATGGCCCATCTAGGCCCAATTC
* * *
75706139 ATATTCTTATGGCCCA-CTAAGCCCAATTC
1 ACATTCATATGGCCCATCTAGGCCCAATTC
75706168 ACATTCATATGGCCCAT-TAGGCCCAA
1 ACATTCATATGGCCCATCTAGGCCCAA
75706194 ATCATAATAT
Statistics
Matches: 67, Mismatches: 13, Indels: 7
0.77 0.15 0.08
Matches are distributed among these distances:
28 20 0.30
29 47 0.70
ACGTcount: A:0.27, C:0.32, G:0.15, T:0.26
Consensus pattern (30 bp):
ACATTCATATGGCCCATCTAGGCCCAATTC
Found at i:75706199 original size:58 final size:57
Alignment explanation
Indices: 75706089--75706199 Score: 143
Period size: 58 Copynumber: 1.9 Consensus size: 57
75706079 CATACATGCA
* ** **
75706089 TATGGCCCACTAGGCCCAATCTTATTCAAATGGCCCATCTGGCCCAGTTCATATTCT
1 TATGGCCCACTAAGCCCAATCACATTCAAATGGCCCATCTGGCCCAAATCATATTCT
*
75706146 TATGGCCCACTAAGCCCAATTCACATTCATATGGCCCAT-TAGGCCCAAATCATA
1 TATGGCCCACTAAGCCCAA-TCACATTCAAATGGCCCATCT-GGCCCAAATCATA
75706200 ATATCTTCAT
Statistics
Matches: 46, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
57 19 0.41
58 27 0.59
ACGTcount: A:0.27, C:0.32, G:0.14, T:0.27
Consensus pattern (57 bp):
TATGGCCCACTAAGCCCAATCACATTCAAATGGCCCATCTGGCCCAAATCATATTCT
Found at i:75706307 original size:19 final size:19
Alignment explanation
Indices: 75706274--75706319 Score: 67
Period size: 19 Copynumber: 2.5 Consensus size: 19
75706264 TGGGTCCAAC
*
75706274 AGCCCATT-AGGCCCATTT
1 AGCCCATTCCGGCCCATTT
*
75706292 AGCCTATTCCGGCCCATTT
1 AGCCCATTCCGGCCCATTT
75706311 AGCCCATTC
1 AGCCCATTC
75706320 TCAACCCAAG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
18 7 0.29
19 17 0.71
ACGTcount: A:0.20, C:0.37, G:0.15, T:0.28
Consensus pattern (19 bp):
AGCCCATTCCGGCCCATTT
Found at i:75712014 original size:25 final size:25
Alignment explanation
Indices: 75711976--75712223 Score: 214
Period size: 25 Copynumber: 10.0 Consensus size: 25
75711966 AGCAAACACA
* * *
75711976 GAATTCTCTAGAAAGCCTTTGTGGC
1 GAATCCTCTGGAAAGCCTTTATGGC
* *
75712001 GAATTCTCTGGAAAGCCATTATGGC
1 GAATCCTCTGGAAAGCCTTTATGGC
* * * *
75712026 GAATCCTTTCGAAAGCCTTTGTGGA
1 GAATCCTCTGGAAAGCCTTTATGGC
* * *
75712051 GAATCCTTTGGAAATCCTTTATGGT
1 GAATCCTCTGGAAAGCCTTTATGGC
* * * *
75712076 GAATCCTTTGAAAAGCATTTTTGGC
1 GAATCCTCTGGAAAGCCTTTATGGC
* *
75712101 GAATCTTCTGGAAAGCC-TTATGGT
1 GAATCCTCTGGAAAGCCTTTATGGC
** * * *
75712125 GAATATTCTAGAAATCCTTTGTGGC
1 GAATCCTCTGGAAAGCCTTTATGGC
* *
75712150 GAATCCTCT-GAAATGCATTTTTGGC
1 GAATCCTCTGGAAA-GCCTTTATGGC
* *
75712175 GAATCTTCTGGAAAGCC-TTATGGT
1 GAATCCTCTGGAAAGCCTTTATGGC
*
75712199 GAATCCTCTGGAAAGCCTTTGTGGC
1 GAATCCTCTGGAAAGCCTTTATGGC
75712224 ATGTTATCAG
Statistics
Matches: 178, Mismatches: 41, Indels: 8
0.78 0.18 0.04
Matches are distributed among these distances:
24 44 0.25
25 130 0.73
26 4 0.02
ACGTcount: A:0.25, C:0.19, G:0.23, T:0.33
Consensus pattern (25 bp):
GAATCCTCTGGAAAGCCTTTATGGC
Found at i:75712060 original size:14 final size:14
Alignment explanation
Indices: 75712041--75712085 Score: 51
Period size: 14 Copynumber: 3.4 Consensus size: 14
75712031 CTTTCGAAAG
75712041 CCTTTGTGGAGAAT
1 CCTTTGTGGAGAAT
75712055 CC-TT-TGGA-AAT
1 CCTTTGTGGAGAAT
* *
75712066 CCTTTATGGTGAAT
1 CCTTTGTGGAGAAT
75712080 CCTTTG
1 CCTTTG
75712086 AAAAGCATTT
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
11 5 0.19
12 6 0.23
13 5 0.19
14 10 0.38
ACGTcount: A:0.20, C:0.18, G:0.22, T:0.40
Consensus pattern (14 bp):
CCTTTGTGGAGAAT
Found at i:75712168 original size:74 final size:73
Alignment explanation
Indices: 75711982--75712223 Score: 274
Period size: 74 Copynumber: 3.3 Consensus size: 73
75711972 CACAGAATTC
* * *
75711982 TCTAGAAAGCCTTTGTGGCGAATTCTCTGGAAAGCCA-TTATGGCGAATCCTT-TCGAAAGCCTT
1 TCTAGAAAGCCTTTGTGGCGAATCCTCT-GAAAG-CATTTTTGGCGAAT-CTTCTGGAAAGCC-T
* *
75712045 TGTGGAGAATCCT
62 TATGGTGAAT-CT
* * * * *
75712058 T-TGGAAATCCTTTATGGTGAATCCTTTGAAAAGCATTTTTGGCGAATCTTCTGGAAAGCCTTAT
1 TCTAGAAAGCCTTTGTGGCGAATCCTCTG-AAAGCATTTTTGGCGAATCTTCTGGAAAGCCTTAT
*
75712122 GGTGAATAT
65 GGTGAATCT
*
75712131 TCTAGAAATCCTTTGTGGCGAATCCTCTGAAATGCATTTTTGGCGAATCTTCTGGAAAGCCTTAT
1 TCTAGAAAGCCTTTGTGGCGAATCCTCTGAAA-GCATTTTTGGCGAATCTTCTGGAAAGCCTTAT
*
75712196 GGTGAATCC
65 GGTGAATCT
*
75712205 TCTGGAAAGCCTTTGTGGC
1 TCTAGAAAGCCTTTGTGGC
75712224 ATGTTATCAG
Statistics
Matches: 142, Mismatches: 19, Indels: 12
0.82 0.11 0.07
Matches are distributed among these distances:
73 5 0.04
74 94 0.66
75 42 0.30
76 1 0.01
ACGTcount: A:0.25, C:0.19, G:0.23, T:0.33
Consensus pattern (73 bp):
TCTAGAAAGCCTTTGTGGCGAATCCTCTGAAAGCATTTTTGGCGAATCTTCTGGAAAGCCTTATG
GTGAATCT
Found at i:75716085 original size:22 final size:22
Alignment explanation
Indices: 75716060--75716108 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
75716050 GGAAATTAGT
* * *
75716060 GATTTCATTAAAGAGTAAATGA
1 GATTTCATGAAAGAGCAAAAGA
75716082 GATTTCATGAAAGAGCAAAAGA
1 GATTTCATGAAAGAGCAAAAGA
75716104 GATTT
1 GATTT
75716109 AAATACAAGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.45, C:0.06, G:0.20, T:0.29
Consensus pattern (22 bp):
GATTTCATGAAAGAGCAAAAGA
Found at i:75719595 original size:12 final size:11
Alignment explanation
Indices: 75719580--75719627 Score: 51
Period size: 12 Copynumber: 4.0 Consensus size: 11
75719570 AAAAGTACTT
75719580 TAAAAATATAAA
1 TAAAAATA-AAA
*
75719592 TAAAGATAAAA
1 TAAAAATAAAA
75719603 GTAAAAATAGAAA
1 -TAAAAATA-AAA
75719616 TAATAAATAAAA
1 TAA-AAATAAAA
75719628 AAGTCTTTAA
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
11 3 0.10
12 20 0.65
13 8 0.26
ACGTcount: A:0.73, C:0.00, G:0.06, T:0.21
Consensus pattern (11 bp):
TAAAAATAAAA
Found at i:75719607 original size:24 final size:25
Alignment explanation
Indices: 75719580--75719627 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 25
75719570 AAAAGTACTT
* *
75719580 TAAAAATATAAATAA-AGATAAAAG
1 TAAAAATAGAAATAATAAATAAAAG
75719604 TAAAAATAGAAATAATAAATAAAA
1 TAAAAATAGAAATAATAAATAAAA
75719628 AAGTCTTTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 14 0.67
25 7 0.33
ACGTcount: A:0.73, C:0.00, G:0.06, T:0.21
Consensus pattern (25 bp):
TAAAAATAGAAATAATAAATAAAAG
Found at i:75727280 original size:79 final size:81
Alignment explanation
Indices: 75727171--75727353 Score: 223
Period size: 79 Copynumber: 2.3 Consensus size: 81
75727161 TACTCGTTCA
* *
75727171 AATGCCTTCGGGACCTAGCCCGG-TTATAGTAACTCGCACAAAAGCCTTCAGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAAAGCCTTC-GGATCTTAACCCGG
* *
75727234 ATTTAGTAAC-TCGCACC
65 ATATAGTAACTTAGCA-C
* **
75727251 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAAAGCCTTCGGATCTTAACCCGGA
* *
75727314 TATGGTCACTTAGCAC
66 TATAGTAACTTAGCAC
*
75727330 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
75727354 CATCATTCGA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 58 0.65
80 28 0.31
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.23
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAAAGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:75727353 original size:40 final size:39
Alignment explanation
Indices: 75727150--75727353 Score: 200
Period size: 40 Copynumber: 5.1 Consensus size: 39
75727140 CGGAATTTAA
** *
75727150 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACCTAGC
1 CCGGATATAG-TAACTCGCACAAA-GCCTTCGGGACTTAGC
* * *
75727190 CCGGTTATAGTAACTCGCACAAAAGCCTTCAGGACTTAAC
1 CCGGATATAGTAACTCGCAC-AAAGCCTTCGGGACTTAGC
* *
75727230 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCA-CAAAGCCTTCGGGACTTAGC
*
75727269 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAA-GCCTTCGGGA-CTTAGC
* * *
75727309 CCGGATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAAGCCTTCGGGACTTAGC
75727349 CCGGA
1 CCGGA
75727354 CATCATTCGA
Statistics
Matches: 136, Mismatches: 18, Indels: 20
0.78 0.10 0.11
Matches are distributed among these distances:
38 5 0.04
39 29 0.21
40 86 0.63
41 16 0.12
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.24
Consensus pattern (39 bp):
CCGGATATAGTAACTCGCACAAAGCCTTCGGGACTTAGC
Found at i:75728548 original size:56 final size:56
Alignment explanation
Indices: 75728481--75728600 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
75728471 TATTAGTTTA
75728481 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
*
75728537 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
75728593 TTGCCCAT
1 TTGCCCAT
75728601 CATCCCTTGT
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.23, C:0.23, G:0.09, T:0.45
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:75843870 original size:40 final size:40
Alignment explanation
Indices: 75843815--75843999 Score: 232
Period size: 40 Copynumber: 4.6 Consensus size: 40
75843805 TATTCGGATG
*
75843815 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTTGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
75843855 ATATCCGGGCGAAGTCCCGAAGGCATTTGTGCGAGTAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC---TAG-TGACT
*
75843898 ATACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * * *
75843938 ATATCCGTGCTAAGACCCGAAGGCATTTGTGCGAATTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-TAGTGACT
*
75843978 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
75844000 TACTTGGGTT
Statistics
Matches: 127, Mismatches: 12, Indels: 13
0.84 0.08 0.09
Matches are distributed among these distances:
39 15 0.12
40 73 0.57
41 3 0.02
43 34 0.27
44 2 0.02
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:75843958 original size:83 final size:80
Alignment explanation
Indices: 75843819--75843999 Score: 274
Period size: 83 Copynumber: 2.2 Consensus size: 80
75843809 CGGATGATAT
* *
75843819 CCGGGCTAAGTCCCGAAGGCATTTGTGCTTGTGACTATATCCGGGCGAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCGAAGACCCGAAGGCATTTG
75843884 TGCGAGTAGTTGCTATAC
66 TGCGA--A-TTGCTATAC
* *
75843902 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGTGCTAAGACCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCGAAGACCCGAAGGCATTTG
*
75843967 TGCGAATTGCTATAT
66 TGCGAATTGCTATAC
*
75843982 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
75844000 TACTTGGGTT
Statistics
Matches: 92, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
79 15 0.16
80 10 0.11
81 1 0.01
83 66 0.72
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCGAAGACCCGAAGGCATTTG
TGCGAATTGCTATAC
Found at i:75846365 original size:48 final size:48
Alignment explanation
Indices: 75846297--75846994 Score: 1101
Period size: 48 Copynumber: 14.7 Consensus size: 48
75846287 TATATATGTG
*
75846297 TGTGGTAAAG-CGAATGGCTAATGTGAAATATATATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGATATGTATA
*
75846344 TGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGATATGTATA
75846392 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGA-ATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATAT-ATATGAGATATGTATA
*
75846440 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGATATGTATA
75846488 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGA-ATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATAT-ATATGAGATATGTATA
*
75846536 TGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGATATGTATA
* *
75846582 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGATATGTATA
75846630 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGA-ATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATAT-ATATGAGATATGTATA
* *
75846678 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTGTGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGATATGTATA
* *
75846726 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGATATGTATA
* *
75846774 TGTGGTAAAG-CGAATGGCTAGTGTGAAATATATATAAGATATGGATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGATATGTATA
75846821 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGA-ATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATAT-ATATGAGATATGTATA
* *
75846869 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATCTGTGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGATATGTATA
* * * *
75846917 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTAGGAGATGTGTGTA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGATATGTATA
* * *
75846965 TATTGT--GGCCGAATGGCTAGTGTGAAATAT
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATAT
75846995 GTTGGAGATG
Statistics
Matches: 612, Mismatches: 27, Indels: 25
0.92 0.04 0.04
Matches are distributed among these distances:
45 1 0.00
46 65 0.11
47 57 0.09
48 487 0.80
49 2 0.00
ACGTcount: A:0.35, C:0.06, G:0.29, T:0.31
Consensus pattern (48 bp):
TGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGATATGTATA
Found at i:75847241 original size:37 final size:37
Alignment explanation
Indices: 75847144--75847246 Score: 170
Period size: 37 Copynumber: 2.8 Consensus size: 37
75847134 GGAAATATAT
*
75847144 TCCGGGTAAGACCCGATGACTACATGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
75847181 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
75847218 TCCGGGTAAGACCCGATAACTACGCGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
75847247 GGACTATTCG
Statistics
Matches: 62, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 62 1.00
ACGTcount: A:0.24, C:0.21, G:0.31, T:0.23
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:75849112 original size:40 final size:40
Alignment explanation
Indices: 75849016--75849239 Score: 249
Period size: 40 Copynumber: 5.7 Consensus size: 40
75849006 TTGAATGCTG
* * * * *
75849016 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
75849056 TCC-GGATAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
75849095 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* **
75849135 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
75849175 TCCGGGTTAAGTCCCGAAGGCA-TTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
75849214 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
75849240 AACGAGGAGC
Statistics
Matches: 160, Mismatches: 19, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
39 56 0.35
40 104 0.65
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:75849257 original size:79 final size:80
Alignment explanation
Indices: 75849090--75849272 Score: 235
Period size: 79 Copynumber: 2.3 Consensus size: 80
75849080 GTGCGAGATA
* * *
75849090 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
** **
75849155 CATTCGTGCGAGTTG
66 CATTCGAACGAGGAG
* * *
75849170 TTAAATCCGGGTTAAGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
*
75849234 CATTTGAACGAGGAG
66 CATTCGAACGAGGAG
* *
75849249 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
75849273 TACGTGATTT
Statistics
Matches: 89, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
78 15 0.17
79 46 0.52
80 28 0.31
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
CATTCGAACGAGGAG
Done.