Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 230 of 349
Found at i:75856999 original size:40 final size:40
Alignment explanation
Indices: 75856903--75857126 Score: 249
Period size: 40 Copynumber: 5.7 Consensus size: 40
75856893 TTGAATGCTG
* * * * *
75856903 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
75856943 TCC-GGATAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
75856982 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* **
75857022 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
75857062 TCCGGGTTAAGTCCCGAAGGCA-TTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
75857101 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
75857127 AACGAGGAGC
Statistics
Matches: 160, Mismatches: 19, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
39 56 0.35
40 104 0.65
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:75857144 original size:79 final size:80
Alignment explanation
Indices: 75856977--75857159 Score: 235
Period size: 79 Copynumber: 2.3 Consensus size: 80
75856967 GTGCGAGATA
* * *
75856977 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
** **
75857042 CATTCGTGCGAGTTG
66 CATTCGAACGAGGAG
* * *
75857057 TTAAATCCGGGTTAAGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
*
75857121 CATTTGAACGAGGAG
66 CATTCGAACGAGGAG
* *
75857136 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
75857160 TACGTGATTT
Statistics
Matches: 89, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
78 15 0.17
79 46 0.52
80 28 0.31
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
CATTCGAACGAGGAG
Found at i:75859575 original size:40 final size:40
Alignment explanation
Indices: 75859520--75859837 Score: 575
Period size: 40 Copynumber: 8.0 Consensus size: 40
75859510 TTGAGAGTGA
75859520 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
75859560 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
75859600 TATATCCGGGCTAAGT-CCGAAGAGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
*
75859639 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGA
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
*
75859679 TATATCCGAGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
75859719 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
*
75859759 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGTTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
* * *
75859799 TATATCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGTG
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
75859838 ATGTGCATTC
Statistics
Matches: 268, Mismatches: 9, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
39 39 0.15
40 229 0.85
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.27
Consensus pattern (40 bp):
TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
Found at i:75860051 original size:25 final size:25
Alignment explanation
Indices: 75860001--75860051 Score: 59
Period size: 25 Copynumber: 2.0 Consensus size: 25
75859991 TGTGTAACAA
* *
75860001 CAAATGAATAGGGGCACTATATGTG
1 CAAATGAATAGAGGCACTAGATGTG
*
75860026 CAAATGATTAGAGGCACTGAGA-GTG
1 CAAATGAATAGAGGCACT-AGATGTG
75860051 C
1 C
75860052 GAGTTCTTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
25 20 0.91
26 2 0.09
ACGTcount: A:0.35, C:0.14, G:0.29, T:0.22
Consensus pattern (25 bp):
CAAATGAATAGAGGCACTAGATGTG
Found at i:75862979 original size:48 final size:48
Alignment explanation
Indices: 75862917--75863437 Score: 866
Period size: 48 Copynumber: 10.9 Consensus size: 48
75862907 TATATATGTG
*
75862917 TGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGATATGTATA
*
75862965 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGATATGTATA
* *
75863013 TGTGGTAAATCCGAATGGCTAGTGTGAAATATCTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGATATGTATA
* *
75863061 TGTGGTAAAGCCGAATGGCTAATGTGAAATATCTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGATATGTATA
75863109 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGA-ATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATAT-ATATGAGATATGTATA
* *
75863157 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTGTGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGATATGTATA
* *
75863205 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGATATGTATA
* *
75863253 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATAAGATATGGATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGATATGTATA
75863301 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGA-ATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATAT-ATATGAGATATGTATA
* *
75863349 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATCTGTGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGATATGTATA
* *
75863397 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTAGGAGAT
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGAT
75863438 GTGTGTATAT
Statistics
Matches: 446, Mismatches: 23, Indels: 8
0.94 0.05 0.02
Matches are distributed among these distances:
48 445 1.00
49 1 0.00
ACGTcount: A:0.34, C:0.07, G:0.28, T:0.31
Consensus pattern (48 bp):
TGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGATATGTATA
Found at i:75863628 original size:37 final size:37
Alignment explanation
Indices: 75863578--75863680 Score: 179
Period size: 37 Copynumber: 2.8 Consensus size: 37
75863568 GGAAATATAT
75863578 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
75863615 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
75863652 TCCGGGTAAGACCCGATAACTACGCGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
75863681 GGACTATTCG
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 63 1.00
ACGTcount: A:0.23, C:0.21, G:0.32, T:0.23
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:75875779 original size:21 final size:20
Alignment explanation
Indices: 75875753--75875792 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
75875743 CTAATGCCTC
75875753 CATACACTATCTCAATATTTA
1 CATACA-TATCTCAATATTTA
* *
75875774 CATACATCTCTTAATATTT
1 CATACATATCTCAATATTT
75875793 TCATGCCAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (20 bp):
CATACATATCTCAATATTTA
Found at i:75884175 original size:26 final size:26
Alignment explanation
Indices: 75884144--75884200 Score: 105
Period size: 26 Copynumber: 2.2 Consensus size: 26
75884134 ATATCGTTCC
*
75884144 ATTTGAGGAGATCGAAGTGAGATCGG
1 ATTTGAGGAGATCGAAGTGAGATCAG
75884170 ATTTGAGGAGATCGAAGTGAGATCAG
1 ATTTGAGGAGATCGAAGTGAGATCAG
75884196 ATTTG
1 ATTTG
75884201 TACTTTGATG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.32, C:0.07, G:0.35, T:0.26
Consensus pattern (26 bp):
ATTTGAGGAGATCGAAGTGAGATCAG
Found at i:75887535 original size:18 final size:18
Alignment explanation
Indices: 75887494--75887535 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
75887484 AAAGTGTATC
* *
75887494 AAATA-ATTTTTTATAAT
1 AAATATATTTTTAAAAAT
75887511 AAA-ATATTTTTAAAAAT
1 AAATATATTTTTAAAAAT
75887528 AAATATAT
1 AAATATAT
75887536 AACAAAAATA
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
16 1 0.05
17 16 0.76
18 4 0.19
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (18 bp):
AAATATATTTTTAAAAAT
Found at i:75890135 original size:93 final size:93
Alignment explanation
Indices: 75890027--75890197 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
75890017 GCCCCTAAGT
* *
75890027 GAACTCGGACACAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTAGGACTCAACTCAA
1 GAACTCGGACACAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTAGGACTCAACTCAA
75890092 CGAGTTCGGATGCCTAGTTACATTCCAC
66 CGAGTTCGGATGCCTAGTTACATTCCAC
* * * *
75890120 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTGAACTCAA
1 GAACTCGGACACAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTAGGACTCAACTCAA
75890185 CGAGTTCGGATGC
66 CGAGTTCGGATGC
75890198 TCAACCATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.29, C:0.28, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACACAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTAGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTCCAC
Found at i:75890194 original size:46 final size:46
Alignment explanation
Indices: 75890022--75890194 Score: 185
Period size: 46 Copynumber: 3.7 Consensus size: 46
75890012 AACCCGCCCC
* * * *
75890022 TAAGTGAACTCGGACACAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
* *
75890068 TAAGTGAACTAGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACATTCC-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCA-TCCA
*
75890118 --A-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
*
75890161 TAAGTGAACTCGGACTGAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
75890195 TGCTCAACCA
Statistics
Matches: 105, Mismatches: 11, Indels: 22
0.76 0.08 0.16
Matches are distributed among these distances:
42 5 0.05
43 3 0.03
44 1 0.01
45 1 0.01
46 58 0.55
47 28 0.27
48 1 0.01
49 1 0.01
50 2 0.02
51 5 0.05
ACGTcount: A:0.30, C:0.27, G:0.22, T:0.21
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:75890650 original size:30 final size:30
Alignment explanation
Indices: 75890616--75890675 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
75890606 ATTTAATACG
75890616 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
75890646 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
75890676 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:75892171 original size:13 final size:13
Alignment explanation
Indices: 75892150--75892179 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
75892140 CTTGGCAGGG
75892150 ACACCCCCATGGC
1 ACACCCCCATGGC
*
75892163 ACACGCCCATGGC
1 ACACCCCCATGGC
75892176 ACAC
1 ACAC
75892180 ACCTGTGTTC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.27, C:0.50, G:0.17, T:0.07
Consensus pattern (13 bp):
ACACCCCCATGGC
Found at i:75903924 original size:47 final size:47
Alignment explanation
Indices: 75903866--75904309 Score: 708
Period size: 47 Copynumber: 9.4 Consensus size: 47
75903856 CAGCCAAGAC
*
75903866 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
75903913 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
75903960 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * *
75904009 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGGTGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
75904056 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
75904103 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
75904150 AGTGTATATATGTAATAAGGCCTAATGGCCAATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
75904197 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * ** * * * *
75904244 AGTGTATATATGTGACAGGGCGGAGTGGCCAACGTGATGGATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
75904291 AGTGCATAAATGTGATAAG
1 AGTGTATATATGTGATAAG
75904310 TCCGAAGGGC
Statistics
Matches: 372, Mismatches: 23, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
47 325 0.87
49 47 0.13
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:75904483 original size:37 final size:37
Alignment explanation
Indices: 75904427--75904505 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
75904417 CCGAGCTCTA
* *
75904427 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
75904464 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
75904501 AAGAC
1 AAGAC
75904506 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:75909340 original size:28 final size:28
Alignment explanation
Indices: 75909308--75909369 Score: 97
Period size: 28 Copynumber: 2.2 Consensus size: 28
75909298 ATTTACTAGA
*
75909308 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATGACCATT
* *
75909336 ATACCCCTATGTATGCTAAATGACCTTT
1 ATACCCCTATGTATGCAAAATGACCATT
75909364 ATACCC
1 ATACCC
75909370 TTAGGGTTAA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.32, C:0.27, G:0.08, T:0.32
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCATT
Found at i:75909538 original size:29 final size:28
Alignment explanation
Indices: 75909478--75909540 Score: 74
Period size: 28 Copynumber: 2.2 Consensus size: 28
75909468 AGGAAGCGTC
*
75909478 CTGGTGGCTATGCCACAAATTATCTATT
1 CTGGTGGCTATGCCACAAAATATCTATT
* *
75909506 CTGGTGGC-ACTGCCACAAAATCTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTAT-T
75909535 CTGGTG
1 CTGGTG
75909541 ACTCTGTCAC
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
27 1 0.03
28 22 0.73
29 7 0.23
ACGTcount: A:0.22, C:0.24, G:0.22, T:0.32
Consensus pattern (28 bp):
CTGGTGGCTATGCCACAAAATATCTATT
Found at i:75910028 original size:19 final size:19
Alignment explanation
Indices: 75910004--75910042 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
75909994 TTTTAATTAT
* *
75910004 TTTTATGGTTTTGTTTTAC
1 TTTTATGATTTTATTTTAC
*
75910023 TTTTATTATTTTATTTTAC
1 TTTTATGATTTTATTTTAC
75910042 T
1 T
75910043 ATGATGAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.15, C:0.05, G:0.08, T:0.72
Consensus pattern (19 bp):
TTTTATGATTTTATTTTAC
Found at i:75910648 original size:11 final size:10
Alignment explanation
Indices: 75910620--75910653 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
75910610 AGCCTGTAAG
75910620 TATTCTGAAT
1 TATTCTGAAT
*
75910630 TTTTCTGAAT
1 TATTCTGAAT
75910640 ATATTCTGAAT
1 -TATTCTGAAT
75910651 TAT
1 TAT
75910654 CTGTCTGTAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
10 12 0.57
11 9 0.43
ACGTcount: A:0.29, C:0.09, G:0.09, T:0.53
Consensus pattern (10 bp):
TATTCTGAAT
Found at i:75917026 original size:28 final size:28
Alignment explanation
Indices: 75916994--75917058 Score: 103
Period size: 28 Copynumber: 2.3 Consensus size: 28
75916984 ATTTACTAGA
*
75916994 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATGACCATT
* *
75917022 ATACCCCTATGTATGCTAAATGACCTTT
1 ATACCCCTATGTATGCAAAATGACCATT
75917050 ATACCCCTA
1 ATACCCCTA
75917059 GGGTTAATTT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.32, C:0.28, G:0.08, T:0.32
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCATT
Found at i:75917687 original size:19 final size:19
Alignment explanation
Indices: 75917663--75917701 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
75917653 TTTTAATTAT
* *
75917663 TTTTATGGTTTTGTTTTAC
1 TTTTATGATTTTATTTTAC
*
75917682 TTTTATTATTTTATTTTAC
1 TTTTATGATTTTATTTTAC
75917701 T
1 T
75917702 ATGATGAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.15, C:0.05, G:0.08, T:0.72
Consensus pattern (19 bp):
TTTTATGATTTTATTTTAC
Found at i:75922044 original size:44 final size:43
Alignment explanation
Indices: 75921981--75922093 Score: 181
Period size: 44 Copynumber: 2.6 Consensus size: 43
75921971 GTGTCAATAC
*
75921981 CATGTCCCAGACAGGTCTTACATTGACACATGTCAAGCCGATG
1 CATGTCCCAGACAGGTCTTACACTGACACATGTCAAGCCGATG
*
75922024 TCATGTCCCAGACAGGTCTTACACTGACACATGTCGAGCCGATG
1 -CATGTCCCAGACAGGTCTTACACTGACACATGTCAAGCCGATG
*
75922068 CGATGTCCTAGACAGGTCTTACACTG
1 C-ATGTCCCAGACAGGTCTTACACTG
75922094 GCTTGCATAT
Statistics
Matches: 65, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
43 1 0.02
44 64 0.98
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (43 bp):
CATGTCCCAGACAGGTCTTACACTGACACATGTCAAGCCGATG
Found at i:75922829 original size:20 final size:20
Alignment explanation
Indices: 75922804--75922842 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
75922794 ACAATTTCAA
75922804 TTATTTCAC-ACATTTACAAC
1 TTATTTCACAAC-TTTACAAC
*
75922824 TTATTTTACAACTTTACAA
1 TTATTTCACAACTTTACAA
75922843 AATAGCCCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 15 0.88
21 2 0.12
ACGTcount: A:0.36, C:0.21, G:0.00, T:0.44
Consensus pattern (20 bp):
TTATTTCACAACTTTACAAC
Found at i:75926439 original size:30 final size:30
Alignment explanation
Indices: 75926400--75926460 Score: 104
Period size: 30 Copynumber: 2.0 Consensus size: 30
75926390 TTGTAAATAT
75926400 AGTACGCCGTAGATAGATGATTTAATATTC
1 AGTACGCCGTAGATAGATGATTTAATATTC
* *
75926430 AGTATGCCGTAGATAGATGATTTACTATTC
1 AGTACGCCGTAGATAGATGATTTAATATTC
75926460 A
1 A
75926461 TGCATTTTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.33, C:0.13, G:0.20, T:0.34
Consensus pattern (30 bp):
AGTACGCCGTAGATAGATGATTTAATATTC
Found at i:75931523 original size:48 final size:48
Alignment explanation
Indices: 75931414--75931687 Score: 239
Period size: 48 Copynumber: 5.6 Consensus size: 48
75931404 GATATGTGTT
* ** *
75931414 AGTGTAAAACCATGTCTGGGACATGGCATCGACACCGGTATATGCGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACA-TTGT-TATGCGAGCC
* *
75931464 AGTGTAAGACCATGTTTGGAACATGGCATCGACATTGTTATGCGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACATTGTTATGCGAGCC
* * * * * *** *
75931512 AGTGTAAGACCATTTCTAGGACATGGCATTGTCCTCAATATGCGAGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACATTGTTATGCGAGCC
* * ** * *
75931560 AGTGCAAGACCATGT-TGGGAATATGGCATCGACATTGTTATATGTGTC
1 AGTGTAAGACCATGTCTGGG-ACATGGCATCGACATTGTTATGCGAGCC
* * *
75931608 AGTGTAAGACGATGTCTGGGACATGGCATCGATACCGA-TGTT-TGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCG--A-C-ATTGTTATGCGAGCC
*
75931658 AGTGTAAGACTATGTCTGGGACATGGCATC
1 AGTGTAAGACCATGTCTGGGACATGGCATC
75931688 AGCATTTTAC
Statistics
Matches: 179, Mismatches: 39, Indels: 12
0.78 0.17 0.05
Matches are distributed among these distances:
47 3 0.02
48 100 0.56
49 6 0.03
50 64 0.36
51 5 0.03
52 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.28, T:0.27
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGACATTGTTATGCGAGCC
Found at i:75938160 original size:95 final size:97
Alignment explanation
Indices: 75937999--75938222 Score: 267
Period size: 95 Copynumber: 2.3 Consensus size: 97
75937989 GATATGTGTT
* * *
75937999 AGTGTAAGACCATGTTTGGGACATGGCATCGGCACCGGTATATGTGAGCCAATGTAAGACCATGT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCACC-GAATATGAGAGCCAATGTAAGACCATGT
**
75938064 TTCGAACATGGCATTGGCATTGTTATGCGAGCC
65 TTCGAACATGGCATCAGCATTGTTATGCGAGCC
* * *
75938097 AGTGTAAGGCCAT-TCTGGGACATGGCATCGGC-CTC-AATATGAGAGCCAGTGTAAGACCTTGT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCAC-CGAATATGAGAGCCAATGTAAGACCATGT
* ** *
75938159 TTGGAACATGGCATCAGCATTGTTATATGTA-TC
65 TTCGAACATGGCATCAGCATTGTTATGCG-AGCC
* *
75938192 AATGTAAGACCATGTCTTGGACATGGCATCG
1 AGTGTAAGACCATGTCTGGGACATGGCATCG
75938223 ACATTTTACC
Statistics
Matches: 108, Mismatches: 15, Indels: 8
0.82 0.11 0.06
Matches are distributed among these distances:
95 59 0.55
96 18 0.17
97 19 0.18
98 12 0.11
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.27
Consensus pattern (97 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCACCGAATATGAGAGCCAATGTAAGACCATGTT
TCGAACATGGCATCAGCATTGTTATGCGAGCC
Found at i:75945759 original size:21 final size:19
Alignment explanation
Indices: 75945723--75945761 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 19
75945713 ACCAAAATCT
*
75945723 TTAGGAAATTTTACTAAAC
1 TTAGAAAATTTTACTAAAC
75945742 TTAGAAAACTTTTCACTAAA
1 TTAGAAAA-TTTT-ACTAAA
75945762 TAGGGGTCAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 7 0.41
20 4 0.24
21 6 0.35
ACGTcount: A:0.44, C:0.13, G:0.08, T:0.36
Consensus pattern (19 bp):
TTAGAAAATTTTACTAAAC
Found at i:75947038 original size:42 final size:41
Alignment explanation
Indices: 75946955--75947054 Score: 137
Period size: 42 Copynumber: 2.4 Consensus size: 41
75946945 ACTAAGTCTA
* * *
75946955 CGTGTAAGACCATATCTGGATATGGCATCGATATGAGATTT
1 CGTGTAAGACCATATCTAGATATGGCACCGATATGAAATTT
* * *
75946996 CGTGTAAGACCACATCTAAGATGTGGCACCGTTATGAAATTT
1 CGTGTAAGACCATATCT-AGATATGGCACCGATATGAAATTT
75947038 CGTGTAAGACCATATCT
1 CGTGTAAGACCATATCT
75947055 GGGCTATCGG
Statistics
Matches: 51, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
41 16 0.31
42 35 0.69
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.30
Consensus pattern (41 bp):
CGTGTAAGACCATATCTAGATATGGCACCGATATGAAATTT
Found at i:75952194 original size:20 final size:20
Alignment explanation
Indices: 75952169--75952208 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
75952159 TGTAATGCAA
75952169 GAATAACTTAGTCATGGTTT
1 GAATAACTTAGTCATGGTTT
75952189 GAATAACTTAGTCATGGTTT
1 GAATAACTTAGTCATGGTTT
75952209 TACTTAATCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.40
Consensus pattern (20 bp):
GAATAACTTAGTCATGGTTT
Found at i:75956610 original size:47 final size:47
Alignment explanation
Indices: 75956559--75956796 Score: 368
Period size: 47 Copynumber: 5.1 Consensus size: 47
75956549 TTCCACGTTT
* **
75956559 ATCACATTAGCCATTCTACCTTATCACACATATGCATGTTCACATTC
1 ATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTC
75956606 ATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTC
1 ATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTC
*
75956653 ATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTC
1 ATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTC
*
75956700 ATCAAATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTC
1 ATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTC
* * * * * **
75956747 ATCACATTCGCCATTAGGCCTTATCTCATATATACACATTCACATTC
1 ATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTC
75956794 ATC
1 ATC
75956797 TCATAAAATC
Statistics
Matches: 177, Mismatches: 14, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 177 1.00
ACGTcount: A:0.28, C:0.29, G:0.10, T:0.33
Consensus pattern (47 bp):
ATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTC
Found at i:75956633 original size:22 final size:22
Alignment explanation
Indices: 75956606--75956681 Score: 59
Period size: 22 Copynumber: 3.3 Consensus size: 22
75956596 GTTCACATTC
75956606 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* *
75956628 ATCACACATAT-G-CATGTTC-ACATT
1 AT--CACAT-TGGCCA--TTCGGCCTT
75956652 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
75956675 ATCACAT
1 ATCACAT
75956682 ATATGCATGT
Statistics
Matches: 41, Mismatches: 4, Indels: 18
0.65 0.06 0.29
Matches are distributed among these distances:
22 13 0.32
23 11 0.27
24 11 0.27
25 6 0.15
ACGTcount: A:0.25, C:0.30, G:0.13, T:0.32
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:75967691 original size:16 final size:16
Alignment explanation
Indices: 75967653--75967694 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
75967643 AAAAAGTGAT
75967653 AAAAAAATACAGAAAA
1 AAAAAAATACAGAAAA
* *
75967669 AAGAAAATACAAAAAA
1 AAAAAAATACAGAAAA
75967685 TAAAAAAATA
1 -AAAAAAATA
75967695 TTTTATCGGT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
16 14 0.64
17 8 0.36
ACGTcount: A:0.81, C:0.05, G:0.05, T:0.10
Consensus pattern (16 bp):
AAAAAAATACAGAAAA
Found at i:75972220 original size:45 final size:45
Alignment explanation
Indices: 75972171--75972344 Score: 208
Period size: 45 Copynumber: 3.8 Consensus size: 45
75972161 TGTTTGGGCA
*
75972171 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAACG
*** * * * *
75972216 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTA-ACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGC-A-ACG
*
75972263 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC-AACG
*
75972309 -CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
75972345 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 17, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
45 66 0.61
46 12 0.11
47 30 0.28
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAACG
Found at i:75972324 original size:92 final size:92
Alignment explanation
Indices: 75972167--75972336 Score: 297
Period size: 92 Copynumber: 1.8 Consensus size: 92
75972157 AGGATGTTTG
*
75972167 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAATGTCCGAACTCGTTGAGT
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAACGTCCGAACTCGTTGAGT
75972232 TGAGTCCGAGTTCGAGAGATGTAACTA
66 TGAGTCCGAGTTCGAGAGATGTAACTA
* *
75972259 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC-AACGTCCGAACTCGTTGAG
75972323 TTGAGTCCGAGTTC
65 TTGAGTCCGAGTTC
75972337 ACTTATGGGC
Statistics
Matches: 74, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 71 0.96
93 3 0.04
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (92 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:75975314 original size:14 final size:15
Alignment explanation
Indices: 75975265--75975314 Score: 66
Period size: 15 Copynumber: 3.4 Consensus size: 15
75975255 GTATCTTGGG
*
75975265 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
75975280 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
75975295 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
75975309 TTTCTT
1 TTTCTT
75975315 GTTATCTTTG
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
14 8 0.26
15 23 0.74
ACGTcount: A:0.10, C:0.18, G:0.12, T:0.60
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:75977752 original size:46 final size:46
Alignment explanation
Indices: 75977702--75977873 Score: 193
Period size: 46 Copynumber: 3.7 Consensus size: 46
75977692 TGGGCCTCCA
*
75977702 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCCG
*** * * ** *
75977748 AACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTA-ACTAGGCATCCG
1 AACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGC-AAACGTCCG
* * *
75977795 AGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCCG
* *
75977841 AGCTTGTTGAGTTGAGTCCGAGTTCACTTATGG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
75977874 GCGTGTTACA
Statistics
Matches: 102, Mismatches: 21, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
46 67 0.66
47 35 0.34
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (46 bp):
AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCCG
Found at i:75980197 original size:23 final size:23
Alignment explanation
Indices: 75980128--75980253 Score: 127
Period size: 23 Copynumber: 5.6 Consensus size: 23
75980118 TTGAGCCGAT
75980128 AAACGGTAAGCT-C-AATTGAGCTG
1 AAACGGTAAGCTCCTAA--GAGCTG
* *
75980151 -AACAGTAAGCTCCGT-AGAGTTG
1 AAACGGTAAGCTCC-TAAGAGCTG
* *
75980173 AAACGGTAAGCCCCTAAGAACTG
1 AAACGGTAAGCTCCTAAGAGCTG
* *
75980196 AAACGATAAGCTCCGAAGAGCTG
1 AAACGGTAAGCTCCTAAGAGCTG
*
75980219 -AACGGTAAGCTCATAAGAGCTG
1 AAACGGTAAGCTCCTAAGAGCTG
75980241 AAACGGTAAGCTC
1 AAACGGTAAGCTC
75980254 ATACAAGCTG
Statistics
Matches: 84, Mismatches: 13, Indels: 12
0.77 0.12 0.11
Matches are distributed among these distances:
22 35 0.42
23 48 0.57
24 1 0.01
ACGTcount: A:0.37, C:0.21, G:0.25, T:0.17
Consensus pattern (23 bp):
AAACGGTAAGCTCCTAAGAGCTG
Found at i:75980263 original size:45 final size:45
Alignment explanation
Indices: 75980156--75980254 Score: 117
Period size: 45 Copynumber: 2.2 Consensus size: 45
75980146 AGCTGAACAG
* * * *
75980156 TAAGCTCCGTAGAGTTGAAACGGTAAGCCCCTAAGAACTGAAACGA
1 TAAGCTCAGAAGAGCTG-AACGGTAAGCCCATAAGAACTGAAACGA
* * * *
75980202 TAAGCTCCGAAGAGCTGAACGGTAAGCTCATAAGAGCTGAAACGG
1 TAAGCTCAGAAGAGCTGAACGGTAAGCCCATAAGAACTGAAACGA
75980247 TAAGCTCA
1 TAAGCTCA
75980255 TACAAGCTGT
Statistics
Matches: 46, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
45 31 0.67
46 15 0.33
ACGTcount: A:0.36, C:0.21, G:0.25, T:0.17
Consensus pattern (45 bp):
TAAGCTCAGAAGAGCTGAACGGTAAGCCCATAAGAACTGAAACGA
Found at i:75986180 original size:20 final size:23
Alignment explanation
Indices: 75986139--75986181 Score: 65
Period size: 20 Copynumber: 2.0 Consensus size: 23
75986129 TAGATGTTAA
75986139 AATTGGCTTGGTTATAATGTTTG
1 AATTGGCTTGGTTATAATGTTTG
75986162 AATTGGC-TGG-TAT-ATGTTTG
1 AATTGGCTTGGTTATAATGTTTG
75986182 CAAGTATTTG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
20 7 0.35
21 3 0.15
22 3 0.15
23 7 0.35
ACGTcount: A:0.21, C:0.05, G:0.28, T:0.47
Consensus pattern (23 bp):
AATTGGCTTGGTTATAATGTTTG
Found at i:75995639 original size:15 final size:16
Alignment explanation
Indices: 75995619--75995656 Score: 53
Period size: 15 Copynumber: 2.4 Consensus size: 16
75995609 TAGGAAGATA
75995619 TTATTTTT-TTATTA-T
1 TTATTTTTATT-TTATT
75995634 TTATTTTTATTTTATT
1 TTATTTTTATTTTATT
75995650 TTATTTT
1 TTATTTT
75995657 ATTAATTTAG
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 11 0.52
16 10 0.48
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (16 bp):
TTATTTTTATTTTATT
Found at i:75997041 original size:16 final size:16
Alignment explanation
Indices: 75997016--75997055 Score: 55
Period size: 16 Copynumber: 2.5 Consensus size: 16
75997006 TGAAAAAGGA
*
75997016 CTTTTTATTT-AAATTT
1 CTTTTAATTTCAAA-TT
75997032 CTTTTAATTTCAAATT
1 CTTTTAATTTCAAATT
75997048 CTTTTAAT
1 CTTTTAAT
75997056 CCATTTAACT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 19 0.86
17 3 0.14
ACGTcount: A:0.28, C:0.10, G:0.00, T:0.62
Consensus pattern (16 bp):
CTTTTAATTTCAAATT
Found at i:76003700 original size:55 final size:55
Alignment explanation
Indices: 76003598--76003713 Score: 144
Period size: 55 Copynumber: 2.1 Consensus size: 55
76003588 TATGTAGGCC
* *** *
76003598 CACGCCCATGTTAATTTAACAGGTTTGCCCACGGTTGCTTGGTACGGGCGTGTCG
1 CACGCCCATGTTAATTTAACAGGTTCGCCCACGGTTGAAAGGCACGGGCGTGTCG
* * *
76003653 TACGCCCATGTTAATTTGACAGGTTCGGCCACGGGTT-AAAGGCACGGGCGTGTCG
1 CACGCCCATGTTAATTTAACAGGTTCGCCCAC-GGTTGAAAGGCACGGGCGTGTCG
76003708 CACGCC
1 CACGCC
76003714 TGTGCTGTTT
Statistics
Matches: 51, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
55 47 0.92
56 4 0.08
ACGTcount: A:0.18, C:0.27, G:0.30, T:0.25
Consensus pattern (55 bp):
CACGCCCATGTTAATTTAACAGGTTCGCCCACGGTTGAAAGGCACGGGCGTGTCG
Found at i:76012934 original size:27 final size:27
Alignment explanation
Indices: 76012882--76012970 Score: 106
Period size: 27 Copynumber: 3.2 Consensus size: 27
76012872 GTGACAGAAT
*
76012882 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATA-TTTGTGGCAGGGC
* *
76012911 CACTAGAACAGATATATGTGGCAGGGC
1 CACCAGAACAGATATTTGTGGCAGGGC
**
76012938 CACCAGAACAGATAATTTGTGGCATAGC
1 CACCAGAACAGAT-ATTTGTGGCAGGGC
76012966 CACCA
1 CACCA
76012971 AGACGCTTCC
Statistics
Matches: 52, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
27 23 0.44
28 23 0.44
29 6 0.12
ACGTcount: A:0.33, C:0.22, G:0.24, T:0.21
Consensus pattern (27 bp):
CACCAGAACAGATATTTGTGGCAGGGC
Found at i:76013124 original size:28 final size:28
Alignment explanation
Indices: 76013077--76013197 Score: 224
Period size: 28 Copynumber: 4.3 Consensus size: 28
76013067 AAATTAACCC
* *
76013077 TAGGGGTATAAAGGTCATTTTGCATACA
1 TAGGGGTATAATGGTAATTTTGCATACA
76013105 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAATGGTAATTTTGCATACA
76013133 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAATGGTAATTTTGCATACA
76013161 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAATGGTAATTTTGCATACA
76013189 TAGGGGTAT
1 TAGGGGTAT
76013198 TCTAGTACAT
Statistics
Matches: 91, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
28 91 1.00
ACGTcount: A:0.31, C:0.07, G:0.26, T:0.35
Consensus pattern (28 bp):
TAGGGGTATAATGGTAATTTTGCATACA
Found at i:76019325 original size:17 final size:17
Alignment explanation
Indices: 76019303--76019335 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
76019293 ATCTAAACCA
76019303 CCAAGT-GTAAGGATGGC
1 CCAAGTAGT-AGGATGGC
76019320 CCAAGTAGTAGGATGG
1 CCAAGTAGTAGGATGG
76019336 TCTTTAAGAG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 13 0.87
18 2 0.13
ACGTcount: A:0.30, C:0.15, G:0.36, T:0.18
Consensus pattern (17 bp):
CCAAGTAGTAGGATGGC
Found at i:76024959 original size:17 final size:17
Alignment explanation
Indices: 76024916--76024962 Score: 55
Period size: 17 Copynumber: 2.9 Consensus size: 17
76024906 CGAAAACATC
*
76024916 TAAACTTAAAAT-AA-T
1 TAAACTCAAAATGAACT
76024931 TAAACTCAAAATGAACT
1 TAAACTCAAAATGAACT
76024948 TAAATCTC-AAATGAA
1 TAAA-CTCAAAATGAA
76024963 AAAAGCATAT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
15 11 0.39
16 2 0.07
17 12 0.43
18 3 0.11
ACGTcount: A:0.55, C:0.13, G:0.04, T:0.28
Consensus pattern (17 bp):
TAAACTCAAAATGAACT
Found at i:76025560 original size:13 final size:12
Alignment explanation
Indices: 76025528--76025562 Score: 54
Period size: 12 Copynumber: 2.9 Consensus size: 12
76025518 TATTTTTTTT
76025528 AAAATTAATATA
1 AAAATTAATATA
76025540 AAAA-TAATATAA
1 AAAATTAATAT-A
76025552 AAAATTAATAT
1 AAAATTAATAT
76025563 GGGCCGAGCC
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
11 6 0.29
12 9 0.43
13 6 0.29
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (12 bp):
AAAATTAATATA
Found at i:76027225 original size:21 final size:21
Alignment explanation
Indices: 76027199--76027249 Score: 75
Period size: 21 Copynumber: 2.4 Consensus size: 21
76027189 GCAGAGGCTA
*
76027199 GCCCGTGTGGCTACCCCACAC
1 GCCCGTGTGACTACCCCACAC
*
76027220 GCCCGTGCGACTACCCCACAC
1 GCCCGTGTGACTACCCCACAC
*
76027241 GCTCGTGTG
1 GCCCGTGTG
76027250 CTCAGACCGT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.14, C:0.45, G:0.25, T:0.16
Consensus pattern (21 bp):
GCCCGTGTGACTACCCCACAC
Found at i:76028522 original size:26 final size:26
Alignment explanation
Indices: 76028462--76028623 Score: 121
Period size: 26 Copynumber: 6.2 Consensus size: 26
76028452 ATACATAGTA
* * *
76028462 CCTGATAAATATA-CACTGGCTCAAAG
1 CCTGCTAAATA-ACCACTAGCTCAAGG
* * *
76028488 CCTGTTAAATAACCACCAACTCAAGG
1 CCTGCTAAATAACCACTAGCTCAAGG
* * * *
76028514 TCTGCTAAACAAACACTTGCTCAAGG
1 CCTGCTAAATAACCACTAGCTCAAGG
* * * * *
76028540 CCTGCTAAATAAGC-GTCATCTCGATG
1 CCTGCTAAATAACCACT-AGCTCAAGG
* * **
76028566 TCTGCTAAATAACCATTAGCTTGAGG
1 CCTGCTAAATAACCACTAGCTCAAGG
76028592 CCTGCTAAATAACCACTAGCTCAAGG
1 CCTGCTAAATAACCACTAGCTCAAGG
76028618 CCTGCT
1 CCTGCT
76028624 TTTTTAGCAT
Statistics
Matches: 103, Mismatches: 30, Indels: 6
0.74 0.22 0.04
Matches are distributed among these distances:
25 2 0.02
26 100 0.97
27 1 0.01
ACGTcount: A:0.33, C:0.27, G:0.16, T:0.24
Consensus pattern (26 bp):
CCTGCTAAATAACCACTAGCTCAAGG
Found at i:76035892 original size:20 final size:19
Alignment explanation
Indices: 76035863--76035905 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
76035853 TTTTGTAAAG
* *
76035863 TTTGTAAAATGGATAGTAAT
1 TTTGTAAAAT-AATAGGAAT
*
76035883 TTTGTGAAATAATAGGAAT
1 TTTGTAAAATAATAGGAAT
76035902 TTTG
1 TTTG
76035906 GGTCACTATA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
19 11 0.55
20 9 0.45
ACGTcount: A:0.37, C:0.00, G:0.21, T:0.42
Consensus pattern (19 bp):
TTTGTAAAATAATAGGAAT
Found at i:76036429 original size:46 final size:46
Alignment explanation
Indices: 76036367--76036537 Score: 200
Period size: 46 Copynumber: 3.7 Consensus size: 46
76036357 GGTGGTATAT
* * *
76036367 GAGCCAGTGTAAGACATGTCTAGAACATGCATCAGTCACGTTATGA
1 GAGCCAGTGTAAGACATGTCTAGGACATGCATCAGCCATGTTATGA
* *
76036413 GAGCCAGTGTAAGACATGTCTGGGACATGAATCAGCCATGTTATGA
1 GAGCCAGTGTAAGACATGTCTAGGACATGCATCAGCCATGTTATGA
* * * * ** *
76036459 GATCCAGTGTAAGACATGTATGGGACATGCATC-GGCATTGAGACGA
1 GAGCCAGTGTAAGACATGTCTAGGACATGCATCAGCCA-TGTTATGA
* *
76036505 GAGCTAATGTAAGACATGTCTAGGACATGCATC
1 GAGCCAGTGTAAGACATGTCTAGGACATGCATC
76036538 GGCCTTGGGA
Statistics
Matches: 107, Mismatches: 17, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
45 3 0.03
46 104 0.97
ACGTcount: A:0.32, C:0.18, G:0.27, T:0.23
Consensus pattern (46 bp):
GAGCCAGTGTAAGACATGTCTAGGACATGCATCAGCCATGTTATGA
Found at i:76045722 original size:40 final size:40
Alignment explanation
Indices: 76045560--76045708 Score: 192
Period size: 40 Copynumber: 3.7 Consensus size: 40
76045550 TATTCGGATG
* * * * *
76045560 ATAACCGGGCTAAGTCCTGAAGGCATTTGTGCTAGTGACC
1 ATAACAGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * *
76045600 A-ATTCCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTTACT
1 ATA-ACAGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
76045640 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACAGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
76045680 ATAACAGGGCTAAGTCCCGAAGACATTTG
1 ATAACAGGGCTAAGTCCCGAAGGCATTTG
76045709 AGCAAGTAGC
Statistics
Matches: 97, Mismatches: 10, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
39 1 0.01
40 95 0.98
41 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (40 bp):
ATAACAGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:76045722 original size:80 final size:80
Alignment explanation
Indices: 76045560--76045741 Score: 208
Period size: 80 Copynumber: 2.3 Consensus size: 80
76045550 TATTCGGATG
* * * * *
76045560 ATAACCGGGCTAAGTCCTGAAGGCATTTGTGCTAGTGACCAATTCCGGGCTAAGTCCCAAAGGCA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACCAATACAGGGCTAAGTCCCAAAGACA
* *
76045625 TTTGTGCGAGTTACT
66 TTTGAGCAAGTTACT
* * *
76045640 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAACAGGGCTAAGTCCCGAAGAC
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACCAAT-ACAGGGCTAAGTCCCAAAGAC
76045704 ATTTGAGCAAG-TAGCT
65 ATTTGAGCAAGTTA-CT
* * *
76045720 ATATCC-GGCTAAATTCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGG
76045742 TACTTGGTTT
Statistics
Matches: 87, Mismatches: 13, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
79 19 0.22
80 68 0.78
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (80 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACCAATACAGGGCTAAGTCCCAAAGACA
TTTGAGCAAGTTACT
Found at i:76049380 original size:21 final size:21
Alignment explanation
Indices: 76049356--76049425 Score: 54
Period size: 21 Copynumber: 3.1 Consensus size: 21
76049346 CCATAGTATC
76049356 TTTCAACCATGGTCTTACACA
1 TTTCAACCATGGTCTTACACA
* *
76049377 TTTCATATCATGTTGTCATGGTA-TC-
1 TTTCA-ACCATG--GTC-T--TACACA
76049402 TTTCAACCATGGTCTTACACA
1 TTTCAACCATGGTCTTACACA
76049423 TTT
1 TTT
76049426 TATATAATGT
Statistics
Matches: 37, Mismatches: 4, Indels: 16
0.65 0.07 0.28
Matches are distributed among these distances:
19 2 0.05
20 1 0.03
21 9 0.24
22 8 0.22
24 8 0.22
25 6 0.16
26 1 0.03
27 2 0.05
ACGTcount: A:0.24, C:0.23, G:0.11, T:0.41
Consensus pattern (21 bp):
TTTCAACCATGGTCTTACACA
Found at i:76049454 original size:138 final size:138
Alignment explanation
Indices: 76049201--76049565 Score: 525
Period size: 138 Copynumber: 2.6 Consensus size: 138
76049191 TTATCTTTGA
* * * * *
76049201 CATGATGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGTTGCCATGGTATCT
1 CATGTTGCCATAGTATCTTTCAACCATGGTCTTACACA-TTTCATATCATGTTGCCATGGTATCT
** * * *
76049265 TTCAACCATGGTCTTATTCATTTCCCGTCATGTTGCCATGGTATCCTTCAACCATGGTCTTATTC
65 TTCAACCATGGTCTTACACATTTCACATAATGTTGCCATGGTATCCTTCAACCATGGTCTTATTC
*
76049330 ATTTCCCGT
130 ATTTCACGT
*
76049339 CATGTTGCCATAGTATCTTTCAACCATGGTCTTACACATTTCATATCATGTTGTCATGGTATCTT
1 CATGTTGCCATAGTATCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTATCTT
* * * *
76049404 TCAACCATGGTCTTACACATTTTATATAATGTTGCGATGGTATCTTTCAACCATGGTCTTATTCA
66 TCAACCATGGTCTTACACATTTCACATAATGTTGCCATGGTATCCTTCAACCATGGTCTTATTCA
*
76049469 TTTCATGT
131 TTTCACGT
* * *
76049477 CACGTTGCCATGGTATCTTTCAACCATGGTCTTAAACATTTCATATCATGTTGCCATGGTATCTT
1 CATGTTGCCATAGTATCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTATCTT
*
76049542 TCAATCATGGTCTTACACATTTCA
66 TCAACCATGGTCTTACACATTTCA
76049566 TTTCAAAGAG
Statistics
Matches: 203, Mismatches: 23, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
137 4 0.02
138 199 0.98
ACGTcount: A:0.22, C:0.23, G:0.14, T:0.41
Consensus pattern (138 bp):
CATGTTGCCATAGTATCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTATCTT
TCAACCATGGTCTTACACATTTCACATAATGTTGCCATGGTATCCTTCAACCATGGTCTTATTCA
TTTCACGT
Found at i:76049564 original size:46 final size:46
Alignment explanation
Indices: 76049201--76049566 Score: 473
Period size: 46 Copynumber: 8.0 Consensus size: 46
76049191 TTATCTTTGA
* * * * *
76049201 CATGATGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATGT
** **
76049247 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCCGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATGT
* ** **
76049293 CATGTTGCCATGGTATCCTTCAACCATGGTCTTATTCATTTCCCGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATGT
* *
76049339 CATGTTGCCATAGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATGT
* * *
76049385 CATGTTGTCATGGTATCTTTCAACCATGGTCTTACACATTTTATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATGT
* * **
76049431 AATGTTGCGATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATGT
* * *
76049477 CACGTTGCCATGGTATCTTTCAACCATGGTCTTAAACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATGT
*
76049523 CATGTTGCCATGGTATCTTTCAATCATGGTCTTACACATTTCAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCAT
76049567 TTCAAAGAGC
Statistics
Matches: 286, Mismatches: 33, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
45 4 0.01
46 282 0.99
ACGTcount: A:0.22, C:0.23, G:0.14, T:0.41
Consensus pattern (46 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATGT
Found at i:76052499 original size:33 final size:33
Alignment explanation
Indices: 76052454--76052521 Score: 127
Period size: 33 Copynumber: 2.1 Consensus size: 33
76052444 AGTCTGGTAC
*
76052454 ACGTAGTGGCCTGCACTTAGTACTACACACGTG
1 ACGTAGTAGCCTGCACTTAGTACTACACACGTG
76052487 ACGTAGTAGCCTGCACTTAGTACTACACACGTG
1 ACGTAGTAGCCTGCACTTAGTACTACACACGTG
76052520 AC
1 AC
76052522 CTCAGCATCT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (33 bp):
ACGTAGTAGCCTGCACTTAGTACTACACACGTG
Found at i:76052560 original size:50 final size:51
Alignment explanation
Indices: 76052487--76052626 Score: 174
Period size: 50 Copynumber: 2.8 Consensus size: 51
76052477 TACACACGTG
*
76052487 ACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTCAG-CATCTAATAC
1 ACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTCAGTCATCGAATAC
* * ** **
76052537 ACGTAGTAGCCTGCACTTAGTACTACACACGTGATCACAGTTTTCGGGTAC
1 ACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTCAGTCATCGAATAC
* * * *
76052588 GCATAGTAGCCTGCACTTAGTACTACACATGCGACCTCA
1 ACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTCA
76052627 CAATAGATCA
Statistics
Matches: 76, Mismatches: 13, Indels: 1
0.84 0.14 0.01
Matches are distributed among these distances:
50 38 0.50
51 38 0.50
ACGTcount: A:0.28, C:0.29, G:0.19, T:0.25
Consensus pattern (51 bp):
ACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTCAGTCATCGAATAC
Found at i:76052560 original size:83 final size:82
Alignment explanation
Indices: 76052408--76052570 Score: 247
Period size: 83 Copynumber: 2.0 Consensus size: 82
76052398 ATGGTACGCA
* ** *
76052408 TAGTAGCCTGCACTTAGTACTACACATGCGACCAACAGTCTGGTACACGTAGTGGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAACAGTCTAATACACGTAGTAGCCTGCACTTA
76052473 GTACTACACACGTGACG
66 GTACTACACACGTGACG
* *
76052490 TAGTAGCCTGCACTTAGTACTACACACGTGACC-TCAGCATCTAATACACGTAGTAGCCTGCACT
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAACAG--TCTAATACACGTAGTAGCCTGCACT
76052554 TAGTACTACACACGTGA
64 TAGTACTACACACGTGA
76052571 TCACAGTTTT
Statistics
Matches: 73, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
81 3 0.04
82 31 0.42
83 39 0.53
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (82 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCAACAGTCTAATACACGTAGTAGCCTGCACTTA
GTACTACACACGTGACG
Found at i:76055705 original size:47 final size:47
Alignment explanation
Indices: 76055642--76056002 Score: 569
Period size: 47 Copynumber: 7.6 Consensus size: 47
76055632 CCCTTCGGGA
* * *
76055642 CTTATCACATTTATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
76055689 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
76055736 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
76055785 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
76055832 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
76055879 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
76055928 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
76055977 CTTATCACATATATATACATTCACAT
1 CTTATCACATATATACACTTTCACAT
76056003 CACAATTATC
Statistics
Matches: 295, Mismatches: 15, Indels: 8
0.93 0.05 0.03
Matches are distributed among these distances:
47 155 0.53
49 140 0.47
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:76055769 original size:49 final size:49
Alignment explanation
Indices: 76055642--76056002 Score: 580
Period size: 49 Copynumber: 7.6 Consensus size: 49
76055632 CCCTTCGGGA
* *
76055642 CTTATCACAT-T-TATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
76055689 CCTGTCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
76055736 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
76055785 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
76055832 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
76055879 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
76055928 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
76055977 CTTATCACATATATATACA--TTCACAT
1 CTTATCACATATATATACACTTTCACAT
76056003 CACAATTATC
Statistics
Matches: 296, Mismatches: 12, Indels: 12
0.93 0.04 0.04
Matches are distributed among these distances:
46 1 0.00
47 144 0.49
49 151 0.51
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.34
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:76055804 original size:96 final size:96
Alignment explanation
Indices: 76055642--76056002 Score: 604
Period size: 96 Copynumber: 3.8 Consensus size: 96
76055632 CCCTTCGGGA
* * *
76055642 CTTATCACAT-T-TATACACTTTCACATTCATCACATTGGCCATTCGGCCCTGTCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATAC
76055705 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
76055736 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATAC
*
76055801 ACTTTCACATTCATCACATCGGCTATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
*
76055832 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTCGGCCTTATCAC--ATATAT
76055895 ACACTTTCACATTCATCACATCGGCCATTAGGC
64 ACACTTTCACATTCATCACATCGGCCATTAGGC
* *
76055928 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATAC
*
76055993 ACATTCACAT
66 ACTTTCACAT
76056003 CACAATTATC
Statistics
Matches: 251, Mismatches: 10, Indels: 10
0.93 0.04 0.04
Matches are distributed among these distances:
94 56 0.22
95 1 0.00
96 149 0.59
98 45 0.18
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.34
Consensus pattern (96 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:76059596 original size:24 final size:24
Alignment explanation
Indices: 76059568--76059615 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
76059558 ATTAAAGTTC
76059568 TAATAGACTTTACAGGGGAAAAAG
1 TAATAGACTTTACAGGGGAAAAAG
*
76059592 TAATAGACTTTATAGGGGAAAAAG
1 TAATAGACTTTACAGGGGAAAAAG
76059616 AGAACTTTCT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.46, C:0.06, G:0.25, T:0.23
Consensus pattern (24 bp):
TAATAGACTTTACAGGGGAAAAAG
Found at i:76070285 original size:27 final size:27
Alignment explanation
Indices: 76070244--76070305 Score: 72
Period size: 28 Copynumber: 2.3 Consensus size: 27
76070234 GTGTTTTTTA
76070244 GTGAAATGTCCAA-TTAGGGATTAAATT
1 GTGAAATGTCCAATTTAGGG-TTAAATT
** *
76070271 GTGAAATGTGTAATTTTTGGGTTAAATT
1 GTGAAATGTCCAA-TTTAGGGTTAAATT
76070299 GTGAAAT
1 GTGAAAT
76070306 AAATAAAAGA
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
27 11 0.37
28 14 0.47
29 5 0.17
ACGTcount: A:0.34, C:0.03, G:0.24, T:0.39
Consensus pattern (27 bp):
GTGAAATGTCCAATTTAGGGTTAAATT
Found at i:76073759 original size:10 final size:9
Alignment explanation
Indices: 76073676--76073757 Score: 83
Period size: 9 Copynumber: 8.9 Consensus size: 9
76073666 TTAATTATTC
76073676 TTTTTAAAT
1 TTTTTAAAT
**
76073685 TTTAAAAAT
1 TTTTTAAAT
* *
76073694 ATTTTACAAA
1 TTTTTA-AAT
* *
76073704 TATTTATAT
1 TTTTTAAAT
*
76073713 ATTTTTAATT
1 -TTTTTAAAT
76073723 TTTTTAAAT
1 TTTTTAAAT
76073732 TTTTTAAAT
1 TTTTTAAAT
76073741 TTTTTAAAT
1 TTTTTAAAT
76073750 TTTTTAAA
1 TTTTTAAA
76073758 ATAGTTTTTT
Statistics
Matches: 57, Mismatches: 14, Indels: 4
0.76 0.19 0.05
Matches are distributed among these distances:
9 45 0.79
10 12 0.21
ACGTcount: A:0.38, C:0.01, G:0.00, T:0.61
Consensus pattern (9 bp):
TTTTTAAAT
Found at i:76074357 original size:12 final size:13
Alignment explanation
Indices: 76074336--76074367 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
76074326 TATCAATTAT
76074336 AAAA-AAACTC-A
1 AAAATAAACTCTA
76074347 AAAATAAACTCTA
1 AAAATAAACTCTA
76074360 AAAATAAA
1 AAAATAAA
76074368 AAAATCATCT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 4 0.21
12 6 0.32
13 9 0.47
ACGTcount: A:0.72, C:0.12, G:0.00, T:0.16
Consensus pattern (13 bp):
AAAATAAACTCTA
Found at i:76075124 original size:26 final size:26
Alignment explanation
Indices: 76075074--76075133 Score: 86
Period size: 27 Copynumber: 2.3 Consensus size: 26
76075064 TCTAATTTAT
76075074 TATAATATAATAATTTTATGCTTATAA
1 TATAATATAATAATTTTAT-CTTATAA
*
76075101 TATAATATAATATTTTTCAT-TTATAA
1 TATAATATAATAATTTT-ATCTTATAA
76075127 TATAATA
1 TATAATA
76075134 CTCTTATCGC
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
26 13 0.42
27 16 0.52
28 2 0.06
ACGTcount: A:0.45, C:0.03, G:0.02, T:0.50
Consensus pattern (26 bp):
TATAATATAATAATTTTATCTTATAA
Found at i:76075500 original size:18 final size:18
Alignment explanation
Indices: 76075463--76075534 Score: 66
Period size: 16 Copynumber: 4.3 Consensus size: 18
76075453 TTTTATTTCT
*
76075463 TATTTAATAT-AACATAA
1 TATTTAATATAAATATAA
* *
76075480 T-TTGAATATATAT-TAA
1 TATTTAATATAAATATAA
76075496 TATTTAATATAAATATAA
1 TATTTAATATAAATATAA
76075514 TA--TAATAT-AATATAA
1 TATTTAATATAAATATAA
76075529 TTATTT
1 -TATTT
76075535 TTAATAATTA
Statistics
Matches: 44, Mismatches: 5, Indels: 11
0.73 0.08 0.18
Matches are distributed among these distances:
15 7 0.16
16 19 0.43
17 12 0.27
18 6 0.14
ACGTcount: A:0.50, C:0.01, G:0.01, T:0.47
Consensus pattern (18 bp):
TATTTAATATAAATATAA
Found at i:76075517 original size:5 final size:5
Alignment explanation
Indices: 76075467--76075529 Score: 56
Period size: 5 Copynumber: 11.8 Consensus size: 5
76075457 ATTTCTTATT
* *
76075467 TAATA TAACA TAATT TGAATA T-ATA TTAATA TTTAATA TAAATA TAATA
1 TAATA TAATA TAATA T-AATA TAATA -TAATA --TAATA T-AATA TAATA
76075516 TAATA TAATA TAAT
1 TAATA TAATA TAAT
76075530 TATTTTTAAT
Statistics
Matches: 49, Mismatches: 4, Indels: 10
0.78 0.06 0.16
Matches are distributed among these distances:
4 3 0.06
5 28 0.57
6 12 0.24
7 6 0.12
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.43
Consensus pattern (5 bp):
TAATA
Found at i:76075771 original size:14 final size:15
Alignment explanation
Indices: 76075744--76075784 Score: 57
Period size: 14 Copynumber: 2.7 Consensus size: 15
76075734 TTTAAAAAAA
76075744 TTAATATATATATTTT
1 TTAATAT-TATATTTT
76075760 TTAATATT-TATTTT
1 TTAATATTATATTTT
*
76075774 TTATTATTATA
1 TTAATATTATA
76075785 CTCTTATAAG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
14 13 0.57
15 3 0.13
16 7 0.30
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (15 bp):
TTAATATTATATTTT
Found at i:76078552 original size:32 final size:32
Alignment explanation
Indices: 76078511--76078574 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
76078501 CAACATGTAT
76078511 GGGCTCCATTACTTCTTTTGCCTTAGCCCTTA
1 GGGCTCCATTACTTCTTTTGCCTTAGCCCTTA
76078543 GGGCTCCATTACTTCTTTTGCCTTAGCCCTTA
1 GGGCTCCATTACTTCTTTTGCCTTAGCCCTTA
76078575 TGGACTTGGT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.12, C:0.31, G:0.16, T:0.41
Consensus pattern (32 bp):
GGGCTCCATTACTTCTTTTGCCTTAGCCCTTA
Found at i:76090098 original size:7 final size:7
Alignment explanation
Indices: 76090086--76090110 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
76090076 CTTGAACTTG
76090086 AACCTTA
1 AACCTTA
76090093 AACCTTA
1 AACCTTA
76090100 AACCTTA
1 AACCTTA
76090107 AACC
1 AACC
76090111 CCTAAGTTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.44, C:0.32, G:0.00, T:0.24
Consensus pattern (7 bp):
AACCTTA
Found at i:76099103 original size:16 final size:17
Alignment explanation
Indices: 76099082--76099113 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
76099072 GTAGGTTTAA
76099082 ATTTAAAATT-AGAATG
1 ATTTAAAATTAAGAATG
76099098 ATTTAAAATTAAGAAT
1 ATTTAAAATTAAGAAT
76099114 AAGTAAAATA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.53, C:0.00, G:0.09, T:0.38
Consensus pattern (17 bp):
ATTTAAAATTAAGAATG
Found at i:76099620 original size:10 final size:10
Alignment explanation
Indices: 76099605--76099636 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
76099595 TTTAATATTA
76099605 AATTATTTTT
1 AATTATTTTT
76099615 AATTATTTTT
1 AATTATTTTT
76099625 --TTATTTTT
1 AATTATTTTT
76099633 AATT
1 AATT
76099637 TTAAAGTAAC
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
8 8 0.40
10 12 0.60
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (10 bp):
AATTATTTTT
Found at i:76099745 original size:18 final size:18
Alignment explanation
Indices: 76099722--76099756 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
76099712 ACCCAAATCC
76099722 CTAGCTCACCACCACCTT
1 CTAGCTCACCACCACCTT
76099740 CTAGCTCACCACCACCT
1 CTAGCTCACCACCACCT
76099757 CCACCGTCCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.23, C:0.51, G:0.06, T:0.20
Consensus pattern (18 bp):
CTAGCTCACCACCACCTT
Found at i:76103367 original size:11 final size:11
Alignment explanation
Indices: 76103353--76103411 Score: 75
Period size: 11 Copynumber: 5.3 Consensus size: 11
76103343 TTTATTGCTA
*
76103353 TTTGGTGCTGT
1 TTTGCTGCTGT
*
76103364 TTTGATGCTGT
1 TTTGCTGCTGT
76103375 TTTGCTGCTGT
1 TTTGCTGCTGT
76103386 TTTAG-TGCTGT
1 TTT-GCTGCTGT
76103397 TTTGCTGCTGCT
1 TTTGCTGCTG-T
76103409 TTT
1 TTT
76103412 TGTTGTGTTT
Statistics
Matches: 43, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
10 1 0.02
11 37 0.86
12 5 0.12
ACGTcount: A:0.03, C:0.14, G:0.27, T:0.56
Consensus pattern (11 bp):
TTTGCTGCTGT
Found at i:76103383 original size:22 final size:22
Alignment explanation
Indices: 76103332--76103411 Score: 85
Period size: 22 Copynumber: 3.7 Consensus size: 22
76103322 CGATGCTGTT
* *
76103332 TTTTG-TGCTATTTTATTGCT-
1 TTTTGCTGCTGTTTTAGTGCTG
* *
76103352 ATTTGGTGCTGTTTT-GATGCTG
1 TTTTGCTGCTGTTTTAG-TGCTG
76103374 TTTTGCTGCTGTTTTAGTGCTG
1 TTTTGCTGCTGTTTTAGTGCTG
76103396 TTTTGCTGCTGCTTTT
1 TTTTGCTGCTG-TTTT
76103412 TGTTGTGTTT
Statistics
Matches: 50, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
20 4 0.08
21 12 0.24
22 29 0.58
23 5 0.10
ACGTcount: A:0.06, C:0.12, G:0.24, T:0.57
Consensus pattern (22 bp):
TTTTGCTGCTGTTTTAGTGCTG
Found at i:76105698 original size:47 final size:47
Alignment explanation
Indices: 76105621--76105763 Score: 150
Period size: 47 Copynumber: 3.0 Consensus size: 47
76105611 AGTAAATTGT
* * * *
76105621 GAAAACCATCATTCTCGAGCCA-TCCGAGATGGCAGTATATTAAAATA
1 GAAAACCATCGTTGTC-AGCCATTCCGAGATGGTAGAATATTAAAATA
* * * *
76105668 GAAAGCTATCGTTGTCAGGCCATTCC-AGATGGTAGCATATTGGAAA-A
1 GAAAACCATCGTTGTCA-GCCATTCCGAGATGGTAGAATATT-AAAATA
76105715 GAAAACCATCGTTGTCAGCC-TATCCGAGATGGTAGAATATTAAAATA
1 GAAAACCATCGTTGTCAGCCAT-TCCGAGATGGTAGAATATTAAAATA
76105762 GA
1 GA
76105764 TTCAATTATC
Statistics
Matches: 79, Mismatches: 11, Indels: 12
0.77 0.11 0.12
Matches are distributed among these distances:
45 1 0.01
46 10 0.13
47 62 0.78
48 6 0.08
ACGTcount: A:0.36, C:0.18, G:0.21, T:0.24
Consensus pattern (47 bp):
GAAAACCATCGTTGTCAGCCATTCCGAGATGGTAGAATATTAAAATA
Found at i:76112781 original size:43 final size:43
Alignment explanation
Indices: 76112733--76112817 Score: 152
Period size: 43 Copynumber: 2.0 Consensus size: 43
76112723 TACATGAATC
*
76112733 GCATCCATCATGAACTCGGACCTCTCAACGAGCTCAGATGCTT
1 GCATCCATAATGAACTCGGACCTCTCAACGAGCTCAGATGCTT
*
76112776 GCATCCATAATGAACTCGGACCTCTCAACGAGCTCGGATGCT
1 GCATCCATAATGAACTCGGACCTCTCAACGAGCTCAGATGCT
76112818 ACATACCTCA
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.26, C:0.32, G:0.20, T:0.22
Consensus pattern (43 bp):
GCATCCATAATGAACTCGGACCTCTCAACGAGCTCAGATGCTT
Found at i:76112846 original size:42 final size:43
Alignment explanation
Indices: 76112734--76112855 Score: 131
Period size: 43 Copynumber: 2.9 Consensus size: 43
76112724 ACATGAATCG
* * *
76112734 CATCCATCATGAACTCGGACCTCTCAACGAGCTCAGATGCTTG
1 CATCCATAACGAACTCGGACCTCTCAACGAGCTCAGATGCTTA
* *
76112777 CATCCATAATGAACTCGGACCTCTCAACGAGCTCGGATGC-TA
1 CATCCATAACGAACTCGGACCTCTCAACGAGCTCAGATGCTTA
* * * * *
76112819 CATACC-TCACGAACTTGGACCACTCAACTAGTTCAGA
1 CAT-CCATAACGAACTCGGACCTCTCAACGAGCTCAGA
76112856 CTTCTTAGTT
Statistics
Matches: 68, Mismatches: 10, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
42 28 0.41
43 40 0.59
ACGTcount: A:0.29, C:0.32, G:0.17, T:0.22
Consensus pattern (43 bp):
CATCCATAACGAACTCGGACCTCTCAACGAGCTCAGATGCTTA
Found at i:76115812 original size:44 final size:42
Alignment explanation
Indices: 76115749--76115866 Score: 157
Period size: 44 Copynumber: 2.8 Consensus size: 42
76115739 ATGTGTTTTT
*
76115749 GTGTAAGACCACGTCTGGGACGTTGGCATCGAATTATGATTTAC
1 GTGTAAGACCACGTCTGGGACATTGGCATCGAATT-TGATTT-C
*
76115793 GTGTAAGACCACGTCTGGGACATTGGCATCGTATTTGATTTC
1 GTGTAAGACCACGTCTGGGACATTGGCATCGAATTTGATTTC
* * *
76115835 GTGTAAGACC-CAGTCTAGGATAGTGGCATCGA
1 GTGTAAGACCAC-GTCTGGGACATTGGCATCGA
76115867 TATCGACATA
Statistics
Matches: 67, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
41 1 0.01
42 27 0.40
43 6 0.09
44 33 0.49
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.29
Consensus pattern (42 bp):
GTGTAAGACCACGTCTGGGACATTGGCATCGAATTTGATTTC
Found at i:76117429 original size:43 final size:43
Alignment explanation
Indices: 76117367--76117467 Score: 175
Period size: 43 Copynumber: 2.3 Consensus size: 43
76117357 TGGGCCTGGC
* * *
76117367 CACACAAGCTGTGGGTCGAGATGTTAGGCTACATGATGCTGCT
1 CACACGAGCTGTGGATCGAGATGTTAGGCTACACGATGCTGCT
76117410 CACACGAGCTGTGGATCGAGATGTTAGGCTACACGATGCTGCT
1 CACACGAGCTGTGGATCGAGATGTTAGGCTACACGATGCTGCT
76117453 CACACGAGCTGTGGA
1 CACACGAGCTGTGGA
76117468 GAATTCACAA
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 55 1.00
ACGTcount: A:0.24, C:0.23, G:0.31, T:0.23
Consensus pattern (43 bp):
CACACGAGCTGTGGATCGAGATGTTAGGCTACACGATGCTGCT
Found at i:76125118 original size:19 final size:19
Alignment explanation
Indices: 76125094--76125131 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
76125084 TGCTTCTATC
76125094 AAGCCAATGGTGTGACATT
1 AAGCCAATGGTGTGACATT
76125113 AAGCCAATGGTGTGACATT
1 AAGCCAATGGTGTGACATT
76125132 CTTCATTATC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.32, C:0.16, G:0.26, T:0.26
Consensus pattern (19 bp):
AAGCCAATGGTGTGACATT
Found at i:76125831 original size:14 final size:15
Alignment explanation
Indices: 76125812--76125840 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
76125802 GCTGATATTG
76125812 TTTTGTT-GTGACAT
1 TTTTGTTGGTGACAT
76125826 TTTTGTTGGTGACAT
1 TTTTGTTGGTGACAT
76125841 GATCTGATTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.14, C:0.07, G:0.24, T:0.55
Consensus pattern (15 bp):
TTTTGTTGGTGACAT
Found at i:76129312 original size:114 final size:117
Alignment explanation
Indices: 76129156--76129450 Score: 409
Period size: 114 Copynumber: 2.5 Consensus size: 117
76129146 TGCTGCAAAT
* * * *
76129156 ACATATTATTGTACAAGTGAGTGAATATTTACATGTACGTTCATTGCATGTTAAATAAATGTTGT
1 ACATATTGTTGTACAAGTGTGTGAGTATTTACATGTACGTTCATTGCATGTTAAATAGATGTTGT
* *
76129221 ATTCTGGGTCATATGATTCCAAT-AT-TGTGTAAAAATGGTGACTGAACATG
66 ATTCTGGGTCATATAAGTCCAATGATATGTGTAAAAATGGTGACTGAACATG
* *
76129271 -CATATTGTTGTACAAGTGTGTGAGTATTTGCATGTATGTTCATTGCATGTTAAA-AGATGTTGT
1 ACATATTGTTGTACAAGTGTGTGAGTATTTACATGTACGTTCATTGCATGTTAAATAGATGTTGT
* * * *
76129334 ATTCTGGGTTATATAAGTCCAATGTTATGTGTAAAAATTGTGACTGAACGTG
66 ATTCTGGGTCATATAAGTCCAATGATATGTGTAAAAATGGTGACTGAACATG
* * *
76129386 CTACATATTGTTGTACAAGTGTGTAAGTATTTTCATATACGTTCATTGCATGTTAAATAGATGTT
1 --ACATATTGTTGTACAAGTGTGTGAGTATTTACATGTACGTTCATTGCATGTTAAATAGATGTT
76129451 ACATGGTGTG
Statistics
Matches: 158, Mismatches: 16, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
113 28 0.18
114 50 0.32
115 23 0.15
118 50 0.32
119 7 0.04
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.40
Consensus pattern (117 bp):
ACATATTGTTGTACAAGTGTGTGAGTATTTACATGTACGTTCATTGCATGTTAAATAGATGTTGT
ATTCTGGGTCATATAAGTCCAATGATATGTGTAAAAATGGTGACTGAACATG
Found at i:76129415 original size:118 final size:118
Alignment explanation
Indices: 76129089--76129450 Score: 457
Period size: 118 Copynumber: 3.0 Consensus size: 118
76129079 TAAATGATTT
* *
76129089 ATGTTTTATTTTGGGTCATATGAGTCCAATGTTGTGTGTAAAAATGGTGACTGAACATGCTGCAA
1 ATGTTGTATTCTGGGTCATATGAGTCCAATGTT-TGTGTAAAAATGGTGACTGAAC--G-TGC--
* * *
76129154 ATACATATTATTGTACAAGTGAGTGAA-TATTTACATGTACGTTCATTGCATGTTAAATAA
60 -TACATATTGTTGTACAAGTGTGT-AAGTATTTACATGTACGTTCATTGCATGTTAAATAG
* * *
76129214 ATGTTGTATTCTGGGTCATATGATTCCAAT-ATTGTGTAAAAATGGTGACTGAACATG---CATA
1 ATGTTGTATTCTGGGTCATATGAGTCCAATGTTTGTGTAAAAATGGTGACTGAACGTGCTACATA
* * *
76129275 TTGTTGTACAAGTGTGTGAGTATTTGCATGTATGTTCATTGCATGTTAAA-AG
66 TTGTTGTACAAGTGTGTAAGTATTTACATGTACGTTCATTGCATGTTAAATAG
* * *
76129327 ATGTTGTATTCTGGGTTATATAAGTCCAATGTTATGTGTAAAAATTGTGACTGAACGTGCTACAT
1 ATGTTGTATTCTGGGTCATATGAGTCCAATGTT-TGTGTAAAAATGGTGACTGAACGTGCTACAT
* *
76129392 ATTGTTGTACAAGTGTGTAAGTATTTTCATATACGTTCATTGCATGTTAAATAG
65 ATTGTTGTACAAGTGTGTAAGTATTTACATGTACGTTCATTGCATGTTAAATAG
76129446 ATGTT
1 ATGTT
76129451 ACATGGTGTG
Statistics
Matches: 209, Mismatches: 21, Indels: 20
0.84 0.08 0.08
Matches are distributed among these distances:
113 29 0.14
114 48 0.23
115 23 0.11
118 50 0.24
119 7 0.03
120 2 0.01
123 22 0.11
124 1 0.00
125 27 0.13
ACGTcount: A:0.30, C:0.10, G:0.21, T:0.39
Consensus pattern (118 bp):
ATGTTGTATTCTGGGTCATATGAGTCCAATGTTTGTGTAAAAATGGTGACTGAACGTGCTACATA
TTGTTGTACAAGTGTGTAAGTATTTACATGTACGTTCATTGCATGTTAAATAG
Found at i:76129739 original size:26 final size:26
Alignment explanation
Indices: 76129709--76129767 Score: 77
Period size: 26 Copynumber: 2.3 Consensus size: 26
76129699 CTATTTGGCG
76129709 AACTAGGGTTA-ACCA-GTAAAGTTGCA
1 AACTAGGG-TACACCAGGT-AAGTTGCA
*
76129735 AACTAGTGTACACCAGGTAAGTTGCA
1 AACTAGGGTACACCAGGTAAGTTGCA
76129761 AACTAGG
1 AACTAGG
76129768 AGTTCTCCAA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
25 2 0.07
26 25 0.86
27 2 0.07
ACGTcount: A:0.37, C:0.17, G:0.24, T:0.22
Consensus pattern (26 bp):
AACTAGGGTACACCAGGTAAGTTGCA
Found at i:76130313 original size:26 final size:26
Alignment explanation
Indices: 76130284--76130340 Score: 89
Period size: 26 Copynumber: 2.2 Consensus size: 26
76130274 CTGACACTCT
76130284 GTTTTTAAA-ATATGTTTTCAAAATAA
1 GTTTTTAAAGATATGTTTT-AAAATAA
*
76130310 GTTTTTAAAGCTATGTTTTAAAATAA
1 GTTTTTAAAGATATGTTTTAAAATAA
76130336 GTTTT
1 GTTTT
76130341 ATGCATACTC
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
26 21 0.72
27 8 0.28
ACGTcount: A:0.37, C:0.04, G:0.11, T:0.49
Consensus pattern (26 bp):
GTTTTTAAAGATATGTTTTAAAATAA
Found at i:76130327 original size:14 final size:13
Alignment explanation
Indices: 76130283--76130340 Score: 64
Period size: 13 Copynumber: 4.5 Consensus size: 13
76130273 TCTGACACTC
76130283 TGTTTTTAAAATA
1 TGTTTTTAAAATA
*
76130296 TGTTTTCAAAATA
1 TGTTTTTAAAATA
* *
76130309 AGTTTTTAAAGCTA
1 TGTTTTTAAA-ATA
76130323 TG-TTTTAAAATA
1 TGTTTTTAAAATA
*
76130335 AGTTTT
1 TGTTTT
76130341 ATGCATACTC
Statistics
Matches: 36, Mismatches: 7, Indels: 4
0.77 0.15 0.09
Matches are distributed among these distances:
12 3 0.08
13 30 0.83
14 3 0.08
ACGTcount: A:0.36, C:0.03, G:0.10, T:0.50
Consensus pattern (13 bp):
TGTTTTTAAAATA
Found at i:76130408 original size:14 final size:13
Alignment explanation
Indices: 76130361--76130411 Score: 52
Period size: 13 Copynumber: 3.8 Consensus size: 13
76130351 CTATGCAAGT
76130361 TTATG-TTTTAAGA
1 TTATGTTTTTAA-A
76130374 -TATGTTTTTAAA
1 TTATGTTTTTAAA
76130386 TTATGGTTTTATAAA
1 TTAT-GTTTT-TAAA
*
76130401 TTGTGTTTTTA
1 TTATGTTTTTA
76130412 TGCACTTTGC
Statistics
Matches: 33, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
12 5 0.15
13 11 0.33
14 10 0.30
15 7 0.21
ACGTcount: A:0.27, C:0.00, G:0.14, T:0.59
Consensus pattern (13 bp):
TTATGTTTTTAAA
Found at i:76132343 original size:26 final size:26
Alignment explanation
Indices: 76132307--76132360 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
76132297 CTGTTTGGCG
76132307 AATTAGGGTTCACC-AGTTAAGTTGCA
1 AATTAGGGTTCACCAAG-TAAGTTGCA
* *
76132333 AATTAGTGTTCGCCAAGTAAGTTGCA
1 AATTAGGGTTCACCAAGTAAGTTGCA
76132359 AA
1 AA
76132361 CCGGGGTTCA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.33, C:0.15, G:0.22, T:0.30
Consensus pattern (26 bp):
AATTAGGGTTCACCAAGTAAGTTGCA
Found at i:76138364 original size:54 final size:52
Alignment explanation
Indices: 76138201--76138386 Score: 158
Period size: 55 Copynumber: 3.5 Consensus size: 52
76138191 TCATAGAAAC
** ** **
76138201 TAAAAGTTTTGGGGGAAAGCAAAAGGAAATTTTTTTTGGAGGTTTGAGAGAAG
1 TAAAAGTTTTGGGGGAAAATAAAAGGAAAAATTTTTAAG-GGTTTGAGAGAAG
** * * * *
76138254 TAAAAGTTTTAGAAGGAAATTAAAAGGAAAAAAGTTTTGAGGGTTTTTAGAGAAG
1 TAAAAGTTTT-GGGGGAAAATAAAAGG-AAAAATTTTTAAGGG-TTTGAGAGAAG
* *
76138309 TAAAAATTTTGGAGGGAAAATAAAAGGAAAAATTTTTAAGGGTTTGAGGAAAAG
1 TAAAAGTTTTGG-GGGAAAATAAAAGGAAAAATTTTTAAGGGTTTGA-GAGAAG
** *
76138363 T-AATTTTTTTGGGGAAAATAAAAG
1 TAAAAGTTTTGGGGGAAAATAAAAG
76138387 AGTTTGAGAT
Statistics
Matches: 107, Mismatches: 21, Indels: 11
0.77 0.15 0.08
Matches are distributed among these distances:
52 13 0.12
53 21 0.20
54 34 0.32
55 39 0.36
ACGTcount: A:0.43, C:0.01, G:0.27, T:0.30
Consensus pattern (52 bp):
TAAAAGTTTTGGGGGAAAATAAAAGGAAAAATTTTTAAGGGTTTGAGAGAAG
Found at i:76139769 original size:4 final size:4
Alignment explanation
Indices: 76139762--76139791 Score: 51
Period size: 4 Copynumber: 7.2 Consensus size: 4
76139752 CATGACTTTA
76139762 TAAT TAAT TAAT TAAT TAAT TAAT TCAAT T
1 TAAT TAAT TAAT TAAT TAAT TAAT T-AAT T
76139792 TGGTATGTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
4 21 0.84
5 4 0.16
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (4 bp):
TAAT
Found at i:76142689 original size:48 final size:48
Alignment explanation
Indices: 76142618--76142891 Score: 248
Period size: 48 Copynumber: 5.7 Consensus size: 48
76142608 TCGGGATTGG
* * * *
76142618 TGCCATGTCCCCGACATGGTCTTACA-TGAACCCACATATCATTATCAA
1 TGCCATGTCCCAGACATGGTCTTACACTG-GCACACATATCATTACCAA
76142666 TGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCA-T-CGCAGA
1 TGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATTAC-CA-A
* * * * * ** *
76142714 TCCCATTTCCCAAACATGGTCTTATACTGGCACATATATCATCGCCGA
1 TGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATTACCAA
* ** ** *
76142762 TGCCATGTCCCAGACATGGTCTTACACAGGCACATTTATCATCGCCGA
1 TGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATTACCAA
* * * * ** * *
76142810 TACCATGTCCCAGACATGGTCTTACCCAGACACATTTATCATCACCGA
1 TGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATTACCAA
* *
76142858 TGCCATGTCCCAGGCATGGTCTTACACAGGCACA
1 TGCCATGTCCCAGACATGGTCTTACACTGGCACA
76142892 TTTAGCACGG
Statistics
Matches: 196, Mismatches: 25, Indels: 10
0.85 0.11 0.04
Matches are distributed among these distances:
47 3 0.02
48 189 0.96
49 3 0.02
50 1 0.01
ACGTcount: A:0.27, C:0.32, G:0.16, T:0.25
Consensus pattern (48 bp):
TGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATTACCAA
Found at i:76142892 original size:48 final size:48
Alignment explanation
Indices: 76142665--76142895 Score: 327
Period size: 48 Copynumber: 4.8 Consensus size: 48
76142655 ATCATTATCA
* ** *
76142665 ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCGCAG
1 ATGCCATGTCCCAGACATGGTCTTACACAGGCACATTTATCATCGCCG
* * * * * *
76142713 ATCCCATTTCCCAAACATGGTCTTATACTGGCACATATATCATCGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACAGGCACATTTATCATCGCCG
76142761 ATGCCATGTCCCAGACATGGTCTTACACAGGCACATTTATCATCGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACAGGCACATTTATCATCGCCG
* * * *
76142809 ATACCATGTCCCAGACATGGTCTTACCCAGACACATTTATCATCACCG
1 ATGCCATGTCCCAGACATGGTCTTACACAGGCACATTTATCATCGCCG
*
76142857 ATGCCATGTCCCAGGCATGGTCTTACACAGGCACATTTA
1 ATGCCATGTCCCAGACATGGTCTTACACAGGCACATTTA
76142896 GCACGGTGTC
Statistics
Matches: 163, Mismatches: 20, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
48 163 1.00
ACGTcount: A:0.27, C:0.31, G:0.16, T:0.26
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACACAGGCACATTTATCATCGCCG
Found at i:76142892 original size:96 final size:96
Alignment explanation
Indices: 76142620--76142895 Score: 338
Period size: 96 Copynumber: 2.9 Consensus size: 96
76142610 GGGATTGGTG
** * * * * * *
76142620 CCATGTCCCCGACATGGTCTTACA-TGAACCCACATATCATTATCAATGCCATGTCCCAGACATG
1 CCATGTCCCAAACATGGTCTTACACAG-ACACATATATCATCACCGATGCCATGTCCCAGACATG
* ** *
76142684 GTCTTACACTGGCACACATATCATCGCAGATC
65 GTCTTACACAGGCACATTTATCATCGCAGATA
* * * * *
76142716 CCATTTCCCAAACATGGTCTTATACTGGCACATATATCATCGCCGATGCCATGTCCCAGACATGG
1 CCATGTCCCAAACATGGTCTTACACAGACACATATATCATCACCGATGCCATGTCCCAGACATGG
*
76142781 TCTTACACAGGCACATTTATCATCGCCGATA
66 TCTTACACAGGCACATTTATCATCGCAGATA
* * * *
76142812 CCATGTCCCAGACATGGTCTTACCCAGACACATTTATCATCACCGATGCCATGTCCCAGGCATGG
1 CCATGTCCCAAACATGGTCTTACACAGACACATATATCATCACCGATGCCATGTCCCAGACATGG
76142877 TCTTACACAGGCACATTTA
66 TCTTACACAGGCACATTTA
76142896 GCACGGTGTC
Statistics
Matches: 154, Mismatches: 25, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
96 152 0.99
97 2 0.01
ACGTcount: A:0.27, C:0.32, G:0.16, T:0.26
Consensus pattern (96 bp):
CCATGTCCCAAACATGGTCTTACACAGACACATATATCATCACCGATGCCATGTCCCAGACATGG
TCTTACACAGGCACATTTATCATCGCAGATA
Found at i:76144407 original size:22 final size:22
Alignment explanation
Indices: 76144388--76144447 Score: 102
Period size: 22 Copynumber: 2.7 Consensus size: 22
76144378 AGCTTTGATG
76144388 TTTTATGTCTCAAGACTTGACA
1 TTTTATGTCTCAAGACTTGACA
76144410 TTTTATGTCTCAAGACTTGACA
1 TTTTATGTCTCAAGACTTGACA
**
76144432 CCTTATGTCTCAAGAC
1 TTTTATGTCTCAAGAC
76144448 AAGTACCTAG
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 36 1.00
ACGTcount: A:0.27, C:0.22, G:0.13, T:0.38
Consensus pattern (22 bp):
TTTTATGTCTCAAGACTTGACA
Found at i:76146356 original size:126 final size:124
Alignment explanation
Indices: 76146145--76146394 Score: 419
Period size: 126 Copynumber: 2.0 Consensus size: 124
76146135 TGATTGAGAG
* * *
76146145 AATGAGTTTATGTTTTTGGGCTATTTTAAAGCCCGAAAATAAAAATAAACCATTCGGTCATAGTG
1 AATGAGTTTATGTTTTTGGGCTATTTTAAAGCCCAAAAATAAAAAAAAACCATTCGGCCATAGTG
* *
76146210 AACATGTTGAGTGGTAAAATATTAAACATATTTTTTTAAAAATTTTAACTGGGGTAAAA
66 AACATGTTGAGTGGTAAAATATTAAACATAATTTTTTAAAAATTTTAACAGGGGTAAAA
76146269 AATGAGTTTATGTTTTTGGGCTATTTTAAAGCCCAAAAATGAAAAAAAAAACCATTCGGCCATAG
1 AATGAGTTTATGTTTTTGGGCTATTTTAAAGCCCAAAAAT--AAAAAAAAACCATTCGGCCATAG
* *
76146334 TGAACATGTTGAGTGGTAAAATATTAAACATAATTTTTTAGAAATTTTACCAGGGGTAAAA
64 TGAACATGTTGAGTGGTAAAATATTAAACATAATTTTTTAAAAATTTTAACAGGGGTAAAA
76146395 TTGTCATAAT
Statistics
Matches: 117, Mismatches: 7, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
124 39 0.33
126 78 0.67
ACGTcount: A:0.40, C:0.10, G:0.17, T:0.34
Consensus pattern (124 bp):
AATGAGTTTATGTTTTTGGGCTATTTTAAAGCCCAAAAATAAAAAAAAACCATTCGGCCATAGTG
AACATGTTGAGTGGTAAAATATTAAACATAATTTTTTAAAAATTTTAACAGGGGTAAAA
Found at i:76152386 original size:28 final size:28
Alignment explanation
Indices: 76152320--76152569 Score: 270
Period size: 28 Copynumber: 8.9 Consensus size: 28
76152310 CTTCATACAG
* *
76152320 AGTTCACCACAAAGGC-TAATCTTTCAT
1 AGTTCGCCACAAAGGCTTATTCTTTCAT
* *
76152347 AGTTCACAACAAAGGCTTATTCTTTCAT
1 AGTTCGCCACAAAGGCTTATTCTTTCAT
* *
76152375 AGCTCGCCACAAAGACTTATTCTTTCAT
1 AGTTCGCCACAAAGGCTTATTCTTTCAT
* *
76152403 AGTTCTCCACAAAGACTTATTCTTTCAT
1 AGTTCGCCACAAAGGCTTATTCTTTCAT
* * *
76152431 AGTTTGCCATAAAGGCTCATTCTTTTC-T
1 AGTTCGCCACAAAGGCTTATTC-TTTCAT
* * *
76152459 AATTCCCCACAAAGACTTATTCTTTCAT
1 AGTTCGCCACAAAGGCTTATTCTTTCAT
* *
76152487 AGTTCACCTCAAAGGCTTATTCTTTTCAT
1 AGTTCGCCACAAAGGCTTATTC-TTTCAT
* * *
76152516 AGTTTGCCACAAAGGCTTATTTTTTTAT
1 AGTTCGCCACAAAGGCTTATTCTTTCAT
* * *
76152544 AGTTCTCCATAAGGGCTTATTCTTTC
1 AGTTCGCCACAAAGGCTTATTCTTTC
76152570 CTGACGTGTT
Statistics
Matches: 185, Mismatches: 34, Indels: 7
0.82 0.15 0.03
Matches are distributed among these distances:
27 19 0.10
28 138 0.75
29 28 0.15
ACGTcount: A:0.27, C:0.24, G:0.11, T:0.38
Consensus pattern (28 bp):
AGTTCGCCACAAAGGCTTATTCTTTCAT
Found at i:76152469 original size:84 final size:84
Alignment explanation
Indices: 76152320--76152569 Score: 306
Period size: 84 Copynumber: 3.0 Consensus size: 84
76152310 CTTCATACAG
* ** * * *
76152320 AGTTCACCACAAAGGC-TAATCTTTCATAGTTCACAACAAAGGCTTATTC-TTTCATAGCTCGCC
1 AGTTCACCACAAAGGCTTATTCTTTCATAGTTTGCCACAAAGGCTTATTCTTTTC-TAGTTCCCC
76152383 ACAAAGACTTATTCTTTCAT
65 ACAAAGACTTATTCTTTCAT
* * * * *
76152403 AGTTCTCCACAAAGACTTATTCTTTCATAGTTTGCCATAAAGGCTCATTCTTTTCTAATTCCCCA
1 AGTTCACCACAAAGGCTTATTCTTTCATAGTTTGCCACAAAGGCTTATTCTTTTCTAGTTCCCCA
76152468 CAAAGACTTATTCTTTCAT
66 CAAAGACTTATTCTTTCAT
* * * *
76152487 AGTTCACCTCAAAGGCTTATTCTTTTCATAGTTTGCCACAAAGGCTTATTTTTTTATAGTTCTCC
1 AGTTCACCACAAAGGCTTATTC-TTTCATAGTTTGCCACAAAGGCTTATTCTTTTCTAGTTCCCC
* * *
76152552 ATAAGGGCTTATTCTTTC
65 ACAAAGACTTATTCTTTC
76152570 CTGACGTGTT
Statistics
Matches: 141, Mismatches: 23, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
83 14 0.10
84 72 0.51
85 55 0.39
ACGTcount: A:0.27, C:0.24, G:0.11, T:0.38
Consensus pattern (84 bp):
AGTTCACCACAAAGGCTTATTCTTTCATAGTTTGCCACAAAGGCTTATTCTTTTCTAGTTCCCCA
CAAAGACTTATTCTTTCAT
Found at i:76160913 original size:27 final size:27
Alignment explanation
Indices: 76160883--76161022 Score: 162
Period size: 27 Copynumber: 5.2 Consensus size: 27
76160873 TGACGAAGTA
76160883 ACCAGATACAGATATTGTGGCAGAGCC
1 ACCAGATACAGATATTGTGGCAGAGCC
76160910 ACCAGA-ACAGATATATGTGGCAGAGCC
1 ACCAGATACAGATAT-TGTGGCAGAGCC
* *
76160937 ACCAGAT-CAGATAATCGTGGCATAGCC
1 ACCAGATACAGAT-ATTGTGGCAGAGCC
*
76160964 ACCAGA-ACAAATATATGTGGCAGAGCC
1 ACCAGATACAGATAT-TGTGGCAGAGCC
* * *
76160991 ACCAAAT-CAGATAATTATGGCATAGCC
1 ACCAGATACAGAT-ATTGTGGCAGAGCC
76161018 ACCAG
1 ACCAG
76161023 GATGGTTCCT
Statistics
Matches: 96, Mismatches: 10, Indels: 14
0.80 0.08 0.12
Matches are distributed among these distances:
26 10 0.10
27 82 0.85
28 4 0.04
ACGTcount: A:0.37, C:0.24, G:0.22, T:0.17
Consensus pattern (27 bp):
ACCAGATACAGATATTGTGGCAGAGCC
Found at i:76160958 original size:54 final size:54
Alignment explanation
Indices: 76160883--76161022 Score: 219
Period size: 54 Copynumber: 2.6 Consensus size: 54
76160873 TGACGAAGTA
* *
76160883 ACCAGATACAGAT-ATTGTGGCAGAGCCACCAGAACAGATATATGTGGCAGAGCC
1 ACCAGAT-CAGATAATTGTGGCATAGCCACCAGAACAAATATATGTGGCAGAGCC
*
76160937 ACCAGATCAGATAATCGTGGCATAGCCACCAGAACAAATATATGTGGCAGAGCC
1 ACCAGATCAGATAATTGTGGCATAGCCACCAGAACAAATATATGTGGCAGAGCC
* *
76160991 ACCAAATCAGATAATTATGGCATAGCCACCAG
1 ACCAGATCAGATAATTGTGGCATAGCCACCAG
76161023 GATGGTTCCT
Statistics
Matches: 79, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
53 5 0.06
54 74 0.94
ACGTcount: A:0.37, C:0.24, G:0.22, T:0.17
Consensus pattern (54 bp):
ACCAGATCAGATAATTGTGGCATAGCCACCAGAACAAATATATGTGGCAGAGCC
Found at i:76162647 original size:26 final size:26
Alignment explanation
Indices: 76162616--76162723 Score: 171
Period size: 26 Copynumber: 4.2 Consensus size: 26
76162606 TGAAATGCCC
*
76162616 ATCATGAAACATTTACCTAAACCATT
1 ATCATGAAACATTTACCTAACCCATT
*
76162642 ATCATGGAACATTTACCTAACCCATT
1 ATCATGAAACATTTACCTAACCCATT
* *
76162668 ATCATGAAATATTTACCTAATCCATT
1 ATCATGAAACATTTACCTAACCCATT
*
76162694 ATCATGGAACATTTACCTAACCCATT
1 ATCATGAAACATTTACCTAACCCATT
76162720 ATCA
1 ATCA
76162724 ATTTGTACCA
Statistics
Matches: 74, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 74 1.00
ACGTcount: A:0.38, C:0.24, G:0.06, T:0.32
Consensus pattern (26 bp):
ATCATGAAACATTTACCTAACCCATT
Found at i:76162693 original size:52 final size:52
Alignment explanation
Indices: 76162616--76162723 Score: 198
Period size: 52 Copynumber: 2.1 Consensus size: 52
76162606 TGAAATGCCC
76162616 ATCATGAAACATTTACCTAAACCATTATCATGGAACATTTACCTAACCCATT
1 ATCATGAAACATTTACCTAAACCATTATCATGGAACATTTACCTAACCCATT
* *
76162668 ATCATGAAATATTTACCTAATCCATTATCATGGAACATTTACCTAACCCATT
1 ATCATGAAACATTTACCTAAACCATTATCATGGAACATTTACCTAACCCATT
76162720 ATCA
1 ATCA
76162724 ATTTGTACCA
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 54 1.00
ACGTcount: A:0.38, C:0.24, G:0.06, T:0.32
Consensus pattern (52 bp):
ATCATGAAACATTTACCTAAACCATTATCATGGAACATTTACCTAACCCATT
Found at i:76172560 original size:22 final size:22
Alignment explanation
Indices: 76172535--76172657 Score: 67
Period size: 22 Copynumber: 5.3 Consensus size: 22
76172525 ACATGCATAT
76172535 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* * *
76172557 ATGTGATGAATG-TGAACAT-GCATA
1 ATGTGAT-AAGGCCG-A-ATGGC-CA
76172581 TATGTGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCCGAATGGCCA
* *
76172604 ATGTGATGAATG-TGAACAT-G-CA
1 ATGTGAT-AAGGCCG-A-ATGGCCA
76172626 TATACGTGATAAGGCCGAATGGCCA
1 -AT--GTGATAAGGCCGAATGGCCA
76172651 ATGTGAT
1 ATGTGAT
76172658 GAATGTGAAC
Statistics
Matches: 75, Mismatches: 10, Indels: 32
0.64 0.09 0.27
Matches are distributed among these distances:
22 23 0.31
23 18 0.24
24 18 0.24
25 16 0.21
ACGTcount: A:0.33, C:0.14, G:0.28, T:0.24
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:76172565 original size:47 final size:47
Alignment explanation
Indices: 76172514--76172844 Score: 497
Period size: 47 Copynumber: 7.0 Consensus size: 47
76172504 GATTTTATGA
76172514 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
76172561 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
*
76172608 GATGAATGTGAACATGCATATACGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
* * *
76172655 GATGAATGTGAACTTGCATATGTGTGATATA-ACCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATA-AGGCCGAATGGCCAATGT
76172702 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
** *
76172749 GATGAATGTGAACATGCATATATGTGATAAGGTAGAATGACCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
* * * ** *
76172796 GATGAACGTGGAA-GTGTATATATGTGGCGAA-GCCGAATGGCTAATGT
1 GATGAATGT-GAACATGCATATATGT-GATAAGGCCGAATGGCCAATGT
76172843 GA
1 GA
76172845 AACGTATATG
Statistics
Matches: 260, Mismatches: 20, Indels: 8
0.90 0.07 0.03
Matches are distributed among these distances:
46 1 0.00
47 252 0.97
48 7 0.03
ACGTcount: A:0.34, C:0.12, G:0.28, T:0.26
Consensus pattern (47 bp):
GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
Found at i:76172945 original size:46 final size:46
Alignment explanation
Indices: 76172825--76172951 Score: 200
Period size: 46 Copynumber: 2.8 Consensus size: 46
76172815 ATATGTGGCG
*
76172825 AAGCCGAATGGCTAATGTGAAACGTATATGAGATGGATATGAGGTA
1 AAGCCGAATGGCTAATGTGAAACGTGTATGAGATGGATATGAGGTA
* *
76172871 AAGCCGAATGGCTAATGCGAAACGTGTATGAGATGGTTATGAGGTA
1 AAGCCGAATGGCTAATGTGAAACGTGTATGAGATGGATATGAGGTA
* **
76172917 AAGCCGAATGGCTAATGTGAGATATGTATGAGATG
1 AAGCCGAATGGCTAATGTGAAACGTGTATGAGATG
76172952 TGTATATATA
Statistics
Matches: 74, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 74 1.00
ACGTcount: A:0.35, C:0.09, G:0.31, T:0.24
Consensus pattern (46 bp):
AAGCCGAATGGCTAATGTGAAACGTGTATGAGATGGATATGAGGTA
Found at i:76179399 original size:44 final size:45
Alignment explanation
Indices: 76179258--76179416 Score: 172
Period size: 44 Copynumber: 3.7 Consensus size: 45
76179248 ACCTCGTACA
* * * *
76179258 ATGCCAAAGTCCCAGATGTGGTCTTACATGT-AAT-CAAATATCG
1 ATGCCAATGTCCCAGACGTGGTCTTACACGTAAATACCAATATCG
* * *
76179301 ATGCCACTGTCCTAGACAG-GGTCTTACAC--AAA-ATCAAGTAT-G
1 ATGCCAATGTCCCAGAC-GTGGTCTTACACGTAAATACCAA-TATCG
*
76179343 ATGCCAACGTCCCAGACGTGGTCTTACACGTAAATACCAA-ATCG
1 ATGCCAATGTCCCAGACGTGGTCTTACACGTAAATACCAATATCG
76179387 ATGCCAATGTCCCAGACGTGGTCTTACACG
1 ATGCCAATGTCCCAGACGTGGTCTTACACG
76179417 ATATCACATA
Statistics
Matches: 95, Mismatches: 12, Indels: 17
0.77 0.10 0.14
Matches are distributed among these distances:
41 1 0.01
42 29 0.31
43 27 0.28
44 34 0.36
45 4 0.04
ACGTcount: A:0.31, C:0.26, G:0.19, T:0.24
Consensus pattern (45 bp):
ATGCCAATGTCCCAGACGTGGTCTTACACGTAAATACCAATATCG
Found at i:76181095 original size:17 final size:17
Alignment explanation
Indices: 76181065--76181106 Score: 57
Period size: 17 Copynumber: 2.4 Consensus size: 17
76181055 ATATATATAT
*
76181065 AAAGTAAAAGGAATAAAA
1 AAAG-AAAAAGAATAAAA
*
76181083 AAAGAAAAAGAATAGAA
1 AAAGAAAAAGAATAAAA
76181100 AAAGAAA
1 AAAGAAA
76181107 GAAAGGATGA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 18 0.82
18 4 0.18
ACGTcount: A:0.76, C:0.00, G:0.17, T:0.07
Consensus pattern (17 bp):
AAAGAAAAAGAATAAAA
Found at i:76181179 original size:16 final size:16
Alignment explanation
Indices: 76181135--76181173 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
76181125 AGAGAGCAGG
* *
76181135 GGAAAGAAAGAAGGAA
1 GGAAAAAAAGAAAGAA
76181151 GGAAAAAAAGAAAGAA
1 GGAAAAAAAGAAAGAA
76181167 GGAAAAA
1 GGAAAAA
76181174 GGGAAAAATT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (16 bp):
GGAAAAAAAGAAAGAA
Found at i:76183773 original size:27 final size:27
Alignment explanation
Indices: 76183743--76183802 Score: 84
Period size: 27 Copynumber: 2.2 Consensus size: 27
76183733 CAAATTGTAA
76183743 AATTACCAAAGTACCCTCGATTTATAG
1 AATTACCAAAGTACCCTCGATTTATAG
****
76183770 AATTACCGTTTTACCCTCGATTTATAG
1 AATTACCAAAGTACCCTCGATTTATAG
76183797 AATTAC
1 AATTAC
76183803 TGTTTTACCC
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.33, C:0.22, G:0.10, T:0.35
Consensus pattern (27 bp):
AATTACCAAAGTACCCTCGATTTATAG
Found at i:76183807 original size:27 final size:27
Alignment explanation
Indices: 76183754--76183857 Score: 163
Period size: 27 Copynumber: 3.9 Consensus size: 27
76183744 ATTACCAAAG
* *
76183754 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
76183781 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
76183808 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
76183835 TACCCTCGATTTACAAAATTACT
1 TACCCTCGATTTACAGAATTACT
76183858 AAAATAACCT
Statistics
Matches: 72, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 72 1.00
ACGTcount: A:0.28, C:0.21, G:0.10, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACTGTTT
Found at i:76183879 original size:27 final size:27
Alignment explanation
Indices: 76183849--76184087 Score: 158
Period size: 27 Copynumber: 8.8 Consensus size: 27
76183839 CTCGATTTAC
* *
76183849 AAAATTACTAAAATAACCTTGGTTTGT
1 AAAATTACCAAAATACCCTTGGTTTGT
* * *
76183876 AAAATTACCAAAATACCCCTAGTTTAT
1 AAAATTACCAAAATACCCTTGGTTTGT
76183903 AAAATTACCAAAATACCCTTGGTTTGT
1 AAAATTACCAAAATACCCTTGGTTTGT
* * * ***
76183930 GAAATTATCGAAATACCCTCAATTTGT
1 AAAATTACCAAAATACCCTTGGTTTGT
* * * * **
76183957 AAAATTATCAAGATACCCCTGATTTAC
1 AAAATTACCAAAATACCCTTGGTTTGT
* * *
76183984 AAAGTTA-CAGAAATACCCTTGACTTTAT
1 AAAATTACCA-AAATACCCTTG-GTTTGT
* * **
76184012 AAAAATTA-TAGAAATACCATTGGTTTAC
1 -AAAATTACCA-AAATACCCTTGGTTTGT
** *
76184040 AAAATTACTGAAATACCTTTGGTTTGT
1 AAAATTACCAAAATACCCTTGGTTTGT
* * *
76184067 AGATTTACCAAAACACCCTTG
1 AAAATTACCAAAATACCCTTG
76184088 TAGGATGAAA
Statistics
Matches: 166, Mismatches: 42, Indels: 8
0.77 0.19 0.04
Matches are distributed among these distances:
26 2 0.01
27 137 0.83
28 9 0.05
29 18 0.11
ACGTcount: A:0.40, C:0.18, G:0.10, T:0.33
Consensus pattern (27 bp):
AAAATTACCAAAATACCCTTGGTTTGT
Found at i:76183882 original size:54 final size:54
Alignment explanation
Indices: 76183740--76183963 Score: 153
Period size: 54 Copynumber: 4.1 Consensus size: 54
76183730 CCTCAAATTG
* * * * * *
76183740 TAAAATTACCAAAGTACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTA
1 TAAAATTACTAAAATACCCTTGGTTTGTAAAATTACCGTTTTACCCTCGATTTA
* **** * ** * *
76183794 TAGAATTACTGTTTTACCCTTGATTTACAGAATTACTGTTTTACCCTCGATTTA
1 TAAAATTACTAAAATACCCTTGGTTTGTAAAATTACCGTTTTACCCTCGATTTA
* * **** *
76183848 CAAAATTACTAAAATAACCTTGGTTTGTAAAATTACCAAAATACCC-CTAGTTTA
1 TAAAATTACTAAAATACCCTTGGTTTGTAAAATTACCGTTTTACCCTCGA-TTTA
* * * *** * *
76183902 TAAAATTACCAAAATACCCTTGGTTTGTGAAATTATCGAAATACCCTCAATTTG
1 TAAAATTACTAAAATACCCTTGGTTTGTAAAATTACCGTTTTACCCTCGATTTA
76183956 TAAAATTA
1 TAAAATTA
76183964 TCAAGATACC
Statistics
Matches: 134, Mismatches: 34, Indels: 4
0.78 0.20 0.02
Matches are distributed among these distances:
53 2 0.01
54 130 0.97
55 2 0.01
ACGTcount: A:0.36, C:0.19, G:0.09, T:0.36
Consensus pattern (54 bp):
TAAAATTACTAAAATACCCTTGGTTTGTAAAATTACCGTTTTACCCTCGATTTA
Found at i:76184148 original size:27 final size:27
Alignment explanation
Indices: 76184118--76184209 Score: 123
Period size: 27 Copynumber: 3.4 Consensus size: 27
76184108 ACCCCTATTA
* *
76184118 GGTAAAAAGACCGTAAAGCTCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
*
76184145 GGTAAAGTGACCGTAAAGCCCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
* *
76184172 GGTAAAGTGACCGTAATA-CCCCTGTAT
1 GGTAAAATGACCGTAA-AGCCCCTGTAG
76184199 GGTAAAATGAC
1 GGTAAAATGAC
76184210 GAATATGCCC
Statistics
Matches: 59, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
27 58 0.98
28 1 0.02
ACGTcount: A:0.34, C:0.20, G:0.26, T:0.21
Consensus pattern (27 bp):
GGTAAAATGACCGTAAAGCCCCTGTAG
Found at i:76185475 original size:20 final size:20
Alignment explanation
Indices: 76185450--76185500 Score: 93
Period size: 20 Copynumber: 2.5 Consensus size: 20
76185440 ATTTTGATAA
76185450 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
76185470 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
76185490 ACATGAGATGT
1 ACATGATATGT
76185501 TCATAAATGC
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.35, C:0.10, G:0.22, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:76185603 original size:25 final size:24
Alignment explanation
Indices: 76185551--76185692 Score: 173
Period size: 25 Copynumber: 5.8 Consensus size: 24
76185541 AGTGCAAAAA
76185551 GGCTTATGCCCCAGTTAT-TAAAG
1 GGCTTATGCCCCAGTTATATAAAG
76185574 GGCTTATGCCCCAGTTATGATAAAG
1 GGCTTATGCCCCAGTTAT-ATAAAG
*
76185599 GGCTTATGCCCCAGTTATGATGAAG
1 GGCTTATGCCCCAGTTAT-ATAAAG
* *
76185624 GGTTTATGCCCCAGTTATAAAAAG
1 GGCTTATGCCCCAGTTATATAAAG
*
76185648 GGCTTTTGCCCCAGTTACTA-AAAG
1 GGCTTATGCCCCAGTTA-TATAAAG
*
76185672 AGGC-TAGGCCTCCAGTTATAT
1 -GGCTTATGCC-CCAGTTATAT
76185693 GATAAAGCAG
Statistics
Matches: 105, Mismatches: 8, Indels: 10
0.85 0.07 0.08
Matches are distributed among these distances:
23 18 0.17
24 29 0.28
25 58 0.55
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (24 bp):
GGCTTATGCCCCAGTTATATAAAG
Found at i:76185639 original size:50 final size:47
Alignment explanation
Indices: 76185546--76185691 Score: 170
Period size: 49 Copynumber: 3.0 Consensus size: 47
76185536 GAGGAAGTGC
76185546 AAAAA-GGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
1 AAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
* * *
76185592 GATAAAGGGCTTATGCCCCAGTTATGATGAAGGGTTTATGCCCCAGTTAT
1 -AAAAAGGGCTTATGCCCCAGTTAT--TAAAGGGCTTATGCCCCAGTTAT
* * *
76185642 AAAAAGGGCTTTTGCCCCAGTTACTAAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAAGGGCTTATGCCCCAGTTA-TTAAAG-GGCTTATGCC-CCAGTTAT
76185691 A
1 A
76185692 TGATAAAGCA
Statistics
Matches: 84, Mismatches: 9, Indels: 10
0.82 0.09 0.10
Matches are distributed among these distances:
47 4 0.05
48 26 0.31
49 32 0.38
50 22 0.26
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (47 bp):
AAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
Found at i:76185664 original size:49 final size:48
Alignment explanation
Indices: 76185546--76185669 Score: 171
Period size: 49 Copynumber: 2.6 Consensus size: 48
76185536 GAGGAAGTGC
76185546 AAAAA-GGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATG
1 AAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATG
* * *
76185593 ATAAAGGGCTTATGCCCCAGTTATGATGAAGGGTTTATGCCCCAGTTAT-
1 AAAAAGGGCTTATGCCCCAGTTAT--TAAAGGGCTTATGCCCCAGTTATG
* *
76185642 AAAAAGGGCTTTTGCCCCAGTTACTAAA
1 AAAAAGGGCTTATGCCCCAGTTATTAAA
76185670 AGAGGCTAGG
Statistics
Matches: 67, Mismatches: 7, Indels: 6
0.84 0.09 0.08
Matches are distributed among these distances:
47 7 0.10
48 18 0.27
49 21 0.31
50 21 0.31
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (48 bp):
AAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATG
Found at i:76185687 original size:74 final size:72
Alignment explanation
Indices: 76185554--76185694 Score: 189
Period size: 74 Copynumber: 1.9 Consensus size: 72
76185544 GCAAAAAGGC
* *
76185554 TTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATGATAAAGGGCTTATGCCCCAGTTATGA
1 TTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATGATAAAGGGCTTAGGCCCCAGTTAT-A
76185619 TGAAGGGT
65 TGAAGGGT
*
76185627 TTATGCCCCAGTTATAAAAAGGGCTTTTGCCCCAGTTACT-A-AAAGAGGC-TAGGCCTCCAGTT
1 TTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTA-TGATAAAG-GGCTTAGGCC-CCAGTT
76185689 ATATGA
62 ATATGA
76185695 TAAAGCAGCT
Statistics
Matches: 61, Mismatches: 3, Indels: 8
0.85 0.04 0.11
Matches are distributed among these distances:
73 28 0.46
74 32 0.52
75 1 0.02
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.29
Consensus pattern (72 bp):
TTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATGATAAAGGGCTTAGGCCCCAGTTATAT
GAAGGGT
Done.