Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 231 of 349
Found at i:76185947 original size:31 final size:31
Alignment explanation
Indices: 76185884--76185947 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
76185874 CGTTTACCGT
**
76185884 AAAGGCTTCGGCCCAGTAATATGAAATTTGA
1 AAAGGCTTCGGCCCAGTAATATGAAAAATGA
**
76185915 AAAGGCTTCGGCCCAGTGTTATGAAAAATGA
1 AAAGGCTTCGGCCCAGTAATATGAAAAATGA
76185946 AA
1 AA
76185948 TATGAAAAGG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.38, C:0.16, G:0.23, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAAAATGA
Found at i:76187574 original size:46 final size:46
Alignment explanation
Indices: 76187202--76187568 Score: 545
Period size: 46 Copynumber: 8.0 Consensus size: 46
76187192 GTGTGCTCTC
** * * * *
76187202 TGATATGAAATGTGTAAGACCATGTTTGAAAAATACCATGGGAACC
1 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACG
** * *
76187248 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGAAACC
1 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACG
**
76187294 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACG
1 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACG
** *
76187340 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGGAACG
1 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACG
76187386 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACG
1 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACG
* * * *
76187432 TAACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAACT
1 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACG
76187478 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACG
1 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACG
* *
76187524 TGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
76187569 ATGACAGAAA
Statistics
Matches: 302, Mismatches: 19, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 302 1.00
ACGTcount: A:0.41, C:0.13, G:0.24, T:0.22
Consensus pattern (46 bp):
TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACG
Found at i:76187581 original size:92 final size:92
Alignment explanation
Indices: 76187202--76187616 Score: 544
Period size: 92 Copynumber: 4.5 Consensus size: 92
76187192 GTGTGCTCTC
** * * * * * * **
76187202 TGATATGAAATGTGTAAGACCATGTTTGAAAAATACCATGGGAACCTGATATGAAATGTGTAAGA
1 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAATAAGA
* *
76187267 CCATGGTTGAAAGATACCATGGAAACC
66 CCATGGTTGAAAGATACCATGGCAACA
** * * **
76187294 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGATATGAAATGTGTAAGA
1 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAATAAGA
* *
76187359 CCATGGTTGAAAGATACCATGGGAACG
66 CCATGGTTGAAAGATACCATGGCAACA
*
76187386 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACGTAACATGAAAAGAATAAGA
1 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAATAAGA
*
76187451 CCATGGTTGAAAGATACCATGGCAACT
66 CCATGGTTGAAAGATACCATGGCAACA
76187478 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAATAAGA
1 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAATAAGA
76187543 CCATGGTTGAAAGATACCATGGCAACA
66 CCATGGTTGAAAGATACCATGGCAACA
* * * *
76187570 TGACA-GAAAATGAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 TGATATG-AAATG-A--A-TAAGACCATGGTTGAAAGATACCATGGCA
76187617 TCATGTCAAA
Statistics
Matches: 297, Mismatches: 21, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
91 1 0.00
92 268 0.90
93 1 0.00
95 1 0.00
96 26 0.09
ACGTcount: A:0.41, C:0.13, G:0.24, T:0.22
Consensus pattern (92 bp):
TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAATAAGA
CCATGGTTGAAAGATACCATGGCAACA
Found at i:76193697 original size:7 final size:7
Alignment explanation
Indices: 76193685--76193711 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
76193675 CACATTTCTA
76193685 CTCATCC
1 CTCATCC
76193692 CTCATCC
1 CTCATCC
76193699 CTCATCC
1 CTCATCC
76193706 CTCATC
1 CTCATC
76193712 ATTCATCATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.15, C:0.56, G:0.00, T:0.30
Consensus pattern (7 bp):
CTCATCC
Found at i:76193717 original size:14 final size:14
Alignment explanation
Indices: 76193684--76193718 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
76193674 TCACATTTCT
76193684 ACTCATCCCTCATC
1 ACTCATCCCTCATC
*
76193698 CCTCATCCCTCATC
1 ACTCATCCCTCATC
*
76193712 ATTCATC
1 ACTCATC
76193719 ATTCTCTCCT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.20, C:0.49, G:0.00, T:0.31
Consensus pattern (14 bp):
ACTCATCCCTCATC
Found at i:76194534 original size:20 final size:21
Alignment explanation
Indices: 76194496--76194534 Score: 55
Period size: 20 Copynumber: 1.9 Consensus size: 21
76194486 AGTTTATTTA
76194496 TGTTATAATTGTTGCAAATTG
1 TGTTATAATTGTTGCAAATTG
76194517 TGTT-TAATT-TTGCTAAAT
1 TGTTATAATTGTTGC-AAAT
76194535 CTGTTTCATT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 4 0.24
20 9 0.53
21 4 0.24
ACGTcount: A:0.28, C:0.05, G:0.15, T:0.51
Consensus pattern (21 bp):
TGTTATAATTGTTGCAAATTG
Found at i:76196678 original size:42 final size:43
Alignment explanation
Indices: 76196578--76196742 Score: 158
Period size: 43 Copynumber: 3.8 Consensus size: 43
76196568 TAACGCCAAC
* *
76196578 GTCCCAGACGTGGTCTTACATGTAATCACATATCGATGCCACT
1 GTCCCAGACATGGTCTTACACGTAATCACATATCGATGCCACT
* * *
76196621 GTCTCAGACAAGGTCTTACACG-AA-CTCATATACGATGCCGA-T
1 GTCCCAGACATGGTCTTACACGTAATCACATAT-CGATGCC-ACT
* * * *
76196663 GTCCCAAACATGGTCTTACACGCAAATCACAAATCGATGGCAAC-
1 GTCCCAGACATGGTCTTACACG-TAATCACATATCGAT-GCCACT
* * *
76196707 GTCCCAGACGTGGTCTTACATGAAATCACATATCGA
1 GTCCCAGACATGGTCTTACACGTAATCACATATCGA
76196743 AATCCTATGT
Statistics
Matches: 100, Mismatches: 15, Indels: 14
0.78 0.12 0.11
Matches are distributed among these distances:
41 6 0.06
42 29 0.29
43 32 0.32
44 26 0.26
45 7 0.07
ACGTcount: A:0.31, C:0.27, G:0.18, T:0.24
Consensus pattern (43 bp):
GTCCCAGACATGGTCTTACACGTAATCACATATCGATGCCACT
Found at i:76200434 original size:7 final size:7
Alignment explanation
Indices: 76200418--76200447 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
76200408 TACCAAAGCC
76200418 AAAAAT-
1 AAAAATA
76200424 AAAAATA
1 AAAAATA
76200431 AAAAATA
1 AAAAATA
76200438 AAAAATA
1 AAAAATA
76200445 AAA
1 AAA
76200448 CCATGAACCA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 6 0.26
7 17 0.74
ACGTcount: A:0.87, C:0.00, G:0.00, T:0.13
Consensus pattern (7 bp):
AAAAATA
Found at i:76201749 original size:19 final size:19
Alignment explanation
Indices: 76201727--76201794 Score: 64
Period size: 19 Copynumber: 3.3 Consensus size: 19
76201717 AGTTTTCTTA
*
76201727 TTTTAATTTGTATTATTTT
1 TTTTAATTTATATTATTTT
76201746 TTTTAATTCACATATTATTCATTTT
1 TTTTAATT----TA-TATT-ATTTT
*
76201771 TTTTAAATTATATTATTTT
1 TTTTAATTTATATTATTTT
76201790 TTTTA
1 TTTTA
76201795 CACATTTTGA
Statistics
Matches: 41, Mismatches: 2, Indels: 12
0.75 0.04 0.22
Matches are distributed among these distances:
19 18 0.44
20 4 0.10
21 2 0.05
23 1 0.02
24 4 0.10
25 12 0.29
ACGTcount: A:0.26, C:0.04, G:0.01, T:0.68
Consensus pattern (19 bp):
TTTTAATTTATATTATTTT
Found at i:76206299 original size:27 final size:27
Alignment explanation
Indices: 76206265--76206464 Score: 247
Period size: 27 Copynumber: 7.4 Consensus size: 27
76206255 TGGATAAGTT
* *
76206265 GTAGAATTACCGAAATACCCTTGTAAG
1 GTAGAATTACCGAAATACCCCTGTAGG
*
76206292 GTAGAATTACCGAAATACCCCTATAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
**
76206319 GTAGAATTATTGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* *
76206346 GTAGAAATACCAAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* *
76206373 ATAGAATTACCGAAATACCCTTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* *
76206400 GTAGAAATACCAAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* * * * *
76206427 GTAGAATTATCGAGATACCCTTATGGG
1 GTAGAATTACCGAAATACCCCTGTAGG
*
76206454 GTAAAATTACC
1 GTAGAATTACC
76206465 ATTTTGCCCT
Statistics
Matches: 146, Mismatches: 27, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 146 1.00
ACGTcount: A:0.37, C:0.19, G:0.20, T:0.24
Consensus pattern (27 bp):
GTAGAATTACCGAAATACCCCTGTAGG
Found at i:76206349 original size:54 final size:54
Alignment explanation
Indices: 76206265--76206465 Score: 278
Period size: 54 Copynumber: 3.7 Consensus size: 54
76206255 TGGATAAGTT
* * * *
76206265 GTAGAATTACCGAAATACCCTTGTAAGGTAGAATTACCGAAATACCCCTATAGG
1 GTAGAATTACCGAAATACCCTTGTAGGGTAGAAATACCAAAATACCCCTGTAGG
** *
76206319 GTAGAATTATTGAAATACCCCTGTAGGGTAGAAATACCAAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCTTGTAGGGTAGAAATACCAAAATACCCCTGTAGG
*
76206373 ATAGAATTACCGAAATACCCTTGTAGGGTAGAAATACCAAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCTTGTAGGGTAGAAATACCAAAATACCCCTGTAGG
* * * *
76206427 GTAGAATTATCGAGATACCCTTATGGGGTA-AAATTACCA
1 GTAGAATTACCGAAATACCCTTGTAGGGTAGAAA-TACCA
76206466 TTTTGCCCTT
Statistics
Matches: 130, Mismatches: 16, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
53 3 0.02
54 127 0.98
ACGTcount: A:0.37, C:0.19, G:0.19, T:0.24
Consensus pattern (54 bp):
GTAGAATTACCGAAATACCCTTGTAGGGTAGAAATACCAAAATACCCCTGTAGG
Found at i:76206474 original size:27 final size:27
Alignment explanation
Indices: 76206444--76206500 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
76206434 TATCGAGATA
*
76206444 CCCTTATGGG-GTAAAATTACCATTTTG
1 CCCTTA-GGGTGTAAAATGACCATTTTG
* *
76206471 CCCTTAGGGTGTGAAATGACTATTTTG
1 CCCTTAGGGTGTAAAATGACCATTTTG
76206498 CCC
1 CCC
76206501 CTCGTGTGTA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
26 3 0.12
27 23 0.88
ACGTcount: A:0.23, C:0.21, G:0.21, T:0.35
Consensus pattern (27 bp):
CCCTTAGGGTGTAAAATGACCATTTTG
Found at i:76206509 original size:27 final size:26
Alignment explanation
Indices: 76206465--76206518 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 26
76206455 TAAAATTACC
*
76206465 ATTTTGCCCTTAGGGTGTGAAATGACT
1 ATTTTGCCCCTAGGGTGT-AAATGACT
* *
76206492 ATTTTGCCCCTCGTGTGTAAATGACT
1 ATTTTGCCCCTAGGGTGTAAATGACT
76206518 A
1 A
76206519 ACTTGTGTGA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 9 0.38
27 15 0.62
ACGTcount: A:0.22, C:0.19, G:0.22, T:0.37
Consensus pattern (26 bp):
ATTTTGCCCCTAGGGTGTAAATGACT
Found at i:76208900 original size:17 final size:18
Alignment explanation
Indices: 76208878--76208911 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
76208868 TGAAGCATAC
*
76208878 AGAAAGA-CAGAATTGTG
1 AGAAAGATCAAAATTGTG
76208895 AGAAAGATCAAAATTGT
1 AGAAAGATCAAAATTGT
76208912 TTTAGGAGAG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.50, C:0.06, G:0.24, T:0.21
Consensus pattern (18 bp):
AGAAAGATCAAAATTGTG
Found at i:76212258 original size:27 final size:27
Alignment explanation
Indices: 76212224--76212396 Score: 229
Period size: 27 Copynumber: 6.4 Consensus size: 27
76212214 TGGATAAGTT
*
76212224 GTAGAATTACCGAAATACCCCTGTAAG
1 GTAGAATTACCGAAATACCCCTGTAGG
* *
76212251 GTAGAATTACTGAAATATCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* **
76212278 ATAGAATTATTGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* *
76212305 GTAGAATTACCGAAATACCCTTGTCGG
1 GTAGAATTACCGAAATACCCCTGTAGG
*
76212332 GTAGAAATACCGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* * *
76212359 GTAGAATTACCGAGATACCCTTGTGGG
1 GTAGAATTACCGAAATACCCCTGTAGG
*
76212386 GTAAAATTACC
1 GTAGAATTACC
76212397 ATTTTGCCCA
Statistics
Matches: 127, Mismatches: 19, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 127 1.00
ACGTcount: A:0.34, C:0.19, G:0.21, T:0.25
Consensus pattern (27 bp):
GTAGAATTACCGAAATACCCCTGTAGG
Found at i:76221011 original size:48 final size:48
Alignment explanation
Indices: 76220592--76221011 Score: 547
Period size: 48 Copynumber: 8.8 Consensus size: 48
76220582 TAAAGTACCA
* * ** *
76220592 ATGCCATGTCCCCGACATGGTCTTACATGAATC-CACATATCATCGCCG
1 ATGCCATGTCCCAGACATGGTCTTACA-CAGGCACATATATCATCGCCG
* * * *
76220640 ATGCCATGTCCTAGACATGATCTTACACTGGCACAAATATCATCGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACAGGCACATATATCATCGCCG
* * * * * * *
76220688 ATGCCATGTCCCAAACATGGTCATACTCTGGTACACATATCATCACCG
1 ATGCCATGTCCCAGACATGGTCTTACACAGGCACATATATCATCGCCG
*
76220736 ATGCCATGTCCCAGACATGGTCTTACACTA-GCACACATATCATCGCCG
1 ATGCCATGTCCCAGACATGGTCTTACAC-AGGCACATATATCATCGCCG
* * * * *
76220784 ATGCCATGTCCCATACATGGTCTTAGATAAGCACATATACCATCGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACAGGCACATATATCATCGCCG
* * ** *
76220832 ATGCCATGCCCCAAACATCATCTAACACAGGCACATATATCATCGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACAGGCACATATATCATCGCCG
76220880 ATGCCATGTCCCAGACATGGTCTTACACAGGCACATATATCATCGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACAGGCACATATATCATCGCCG
* *
76220928 ATCCCATGTCCTAGACATGGTCTTACACAGGCACATATATCATCGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACAGGCACATATATCATCGCCG
76220976 ATGCCATGTCCCAGACATGGTCTTACACAGGCACAT
1 ATGCCATGTCCCAGACATGGTCTTACACAGGCACAT
76221012 TTAGCATGGT
Statistics
Matches: 324, Mismatches: 45, Indels: 6
0.86 0.12 0.02
Matches are distributed among these distances:
47 2 0.01
48 322 0.99
ACGTcount: A:0.28, C:0.32, G:0.16, T:0.24
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACACAGGCACATATATCATCGCCG
Found at i:76228585 original size:80 final size:79
Alignment explanation
Indices: 76228501--76228672 Score: 220
Period size: 79 Copynumber: 2.2 Consensus size: 79
76228491 GGACTAAGAT
*
76228501 CCGAAGGCATTTGTGCGAGATA-CAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACT
1 CCGAAGGCATTTGTGCGAGATATCAAA-TCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACT
* *
76228565 AAATCCGGGTTAAGTC
64 AAAACCGGGCTAAGTC
* * * * * * *
76228581 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
*
76228646 AACCGGGCTATGTC
66 AACCGGGCTAAGTC
76228660 CCGAAGGCATTTG
1 CCGAAGGCATTTG
76228673 AACGAGGAGC
Statistics
Matches: 79, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
79 38 0.48
80 38 0.48
81 3 0.04
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
AACCGGGCTAAGTC
Found at i:76228652 original size:39 final size:39
Alignment explanation
Indices: 76228448--76228670 Score: 209
Period size: 40 Copynumber: 5.6 Consensus size: 39
76228438 TTGAATGCTG
* * * * *
76228448 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTA-AGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGA-T-ACTAAA
**
76228488 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATAC-AAA
1 TCCGGGTTAAG-TCCCGAAGGCA-TTGTGCGAGATACTAAA
* *
76228527 TTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
1 -TCCGGGTTAAGTCCCGAAGG-CATTGTGCGAGATACTAAA
* *
76228568 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGATACTAAA
* * *
76228608 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAA
* * *
76228647 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
76228671 TGAACGAGGA
Statistics
Matches: 157, Mismatches: 18, Indels: 17
0.82 0.09 0.09
Matches are distributed among these distances:
39 40 0.25
40 103 0.66
41 13 0.08
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAA
Found at i:76228690 original size:79 final size:80
Alignment explanation
Indices: 76228528--76228705 Score: 191
Period size: 79 Copynumber: 2.2 Consensus size: 80
76228518 AGATACAAAT
* * * *
76228528 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
** * *
76228593 GTGCGAGTTATTAAA
66 GAACGAGTGACTAAA
* * * * *
76228608 TCCGGGTTATGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
*
76228672 GAACGAG-GAGCTATA
66 GAACGAGTGA-CTAAA
*
76228687 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
76228706 TACGTGATTT
Statistics
Matches: 81, Mismatches: 16, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
78 15 0.19
79 48 0.59
80 18 0.22
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
GAACGAGTGACTAAA
Found at i:76236444 original size:38 final size:40
Alignment explanation
Indices: 76236393--76236561 Score: 204
Period size: 39 Copynumber: 4.3 Consensus size: 40
76236383 GGACTAAGAT
76236393 CCGAAGGCATTTGTGCGAGATAC-AAATTCC-GGTTAAG-C
1 CCGAAGGCATTTGTGCGAGATACTAAA-TCCGGGTTAAGTC
*
76236431 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGATACTAAATCCGGGTTAAGTC
* ** *
76236471 CCGAAGGCATTCGTGCGAG-TTTTAAATCCGGGTTATGTC
1 CCGAAGGCATTTGTGCGAGATACTAAATCCGGGTTAAGTC
* * * * *
76236510 CCGAAGGCA-TTGTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTTGTGCGAGATACTAAATCCGGGTTAAGTC
76236549 CCGAAGGCATTTG
1 CCGAAGGCATTTG
76236562 AACGAGGAGC
Statistics
Matches: 114, Mismatches: 12, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
38 32 0.28
39 61 0.54
40 21 0.18
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGATACTAAATCCGGGTTAAGTC
Found at i:76236583 original size:78 final size:78
Alignment explanation
Indices: 76236420--76236594 Score: 183
Period size: 78 Copynumber: 2.2 Consensus size: 78
76236410 AGATACAAAT
* * *
76236420 TCCGGTTAAG-CCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCG
1 TCCGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTCG
** ***
76236484 TGCGAGTTTTAAA
66 AACGAGAGCTAAA
* * * * *
76236497 TCCGGGTTATGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCC-GGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
*
76236561 GAACGAGGAGCTATA
65 GAACGA-GAGCTAAA
*
76236576 TCCGGTTAAATCCCGAAGG
1 TCCGGTTAAGTCCCGAAGG
76236595 TACGTGATTT
Statistics
Matches: 79, Mismatches: 16, Indels: 5
0.79 0.16 0.05
Matches are distributed among these distances:
77 3 0.04
78 61 0.77
79 15 0.19
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (78 bp):
TCCGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTCG
AACGAGAGCTAAA
Found at i:76238258 original size:19 final size:19
Alignment explanation
Indices: 76238234--76238279 Score: 92
Period size: 19 Copynumber: 2.4 Consensus size: 19
76238224 ACAAGGAGAT
76238234 GCCCGTGTGCCATTGACAC
1 GCCCGTGTGCCATTGACAC
76238253 GCCCGTGTGCCATTGACAC
1 GCCCGTGTGCCATTGACAC
76238272 GCCCGTGT
1 GCCCGTGT
76238280 CCCTAGGCCA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.13, C:0.37, G:0.28, T:0.22
Consensus pattern (19 bp):
GCCCGTGTGCCATTGACAC
Found at i:76241203 original size:48 final size:47
Alignment explanation
Indices: 76241134--76241396 Score: 252
Period size: 48 Copynumber: 5.6 Consensus size: 47
76241124 TAAAGTACAA
* * * *
76241134 ATGCCATGTCCCCGACATGGTCATACATGAATCCACATATCATCGCCC
1 ATGCCATGTCCCAGACATGGTCTTACA-GAAGCCACATATCATCGCCG
*
76241182 ATGCCATGTCCCAGACATGGTCTTACATTGGAAG--ACATATCATCACCG
1 ATGCCATGTCCCAGACATGGTCTTACA---GAAGCCACATATCATCGCCG
* * **
76241230 ATGCCATGTCCCAGACATGGTCTTACACAAGCACATATATCATTTCCG
1 ATGCCATGTCCCAGACATGGTCTTACAGAAGC-CACATATCATCGCCG
* *
76241278 ATGCCATGTCCCAGACATGGTCTTACA-CAGGCACATATACCATCGCCG
1 ATGCCATGTCCCAGACATGGTCTTACAGAAGCCACATAT--CATCGCCG
* * * * *
76241326 ATGCCATGTCCCAGACATTGTCTTACACAGGCACATATATCATCGTCG
1 ATGCCATGTCCCAGACATGGTCTTACAGAAGC-CACATATCATCGCCG
*
76241374 AT----TGTCCCAAACATGGTCTTACA
1 ATGCCATGTCCCAGACATGGTCTTACA
76241397 TAGGCACATT
Statistics
Matches: 183, Mismatches: 23, Indels: 22
0.80 0.10 0.10
Matches are distributed among these distances:
44 19 0.10
45 3 0.02
46 6 0.03
47 2 0.01
48 143 0.78
49 1 0.01
50 9 0.05
ACGTcount: A:0.28, C:0.30, G:0.16, T:0.25
Consensus pattern (47 bp):
ATGCCATGTCCCAGACATGGTCTTACAGAAGCCACATATCATCGCCG
Found at i:76241298 original size:96 final size:96
Alignment explanation
Indices: 76241134--76241370 Score: 305
Period size: 96 Copynumber: 2.5 Consensus size: 96
76241124 TAAAGTACAA
* * * * *
76241134 ATGCCATGTCCCCGACATGGTCATACATGAATC-CACATATCATCGCCCATGCCATGTCCCAGAC
1 ATGCCATGTCCCAGACATGGTCTTACA-CAAGCACATATATCATCGCCCATGCCATGTCCCAGAC
** * *
76241198 ATGGTCTTACATTGGAAGACATATCATCACCG
65 ATGGTCTTACACAGGAACACATACCATCACCG
** *
76241230 ATGCCATGTCCCAGACATGGTCTTACACAAGCACATATATCATTTCCGATGCCATGTCCCAGACA
1 ATGCCATGTCCCAGACATGGTCTTACACAAGCACATATATCATCGCCCATGCCATGTCCCAGACA
* * *
76241295 TGGTCTTACACAGGCACATATACCATCGCCG
66 TGGTCTTACACAGGAACACATACCATCACCG
* *
76241326 ATGCCATGTCCCAGACATTGTCTTACACAGGCACATATATCATCG
1 ATGCCATGTCCCAGACATGGTCTTACACAAGCACATATATCATCG
76241371 TCGATTGTCC
Statistics
Matches: 121, Mismatches: 19, Indels: 2
0.85 0.13 0.01
Matches are distributed among these distances:
95 3 0.02
96 118 0.98
ACGTcount: A:0.28, C:0.31, G:0.16, T:0.24
Consensus pattern (96 bp):
ATGCCATGTCCCAGACATGGTCTTACACAAGCACATATATCATCGCCCATGCCATGTCCCAGACA
TGGTCTTACACAGGAACACATACCATCACCG
Found at i:76245097 original size:30 final size:30
Alignment explanation
Indices: 76245063--76245123 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
76245053 TCCTTAACTC
76245063 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
76245093 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
76245123 A
1 A
76245124 GGCTCGGAAT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:76249488 original size:30 final size:30
Alignment explanation
Indices: 76249454--76249514 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
76249444 TCCTTAACTC
76249454 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
76249484 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
76249514 A
1 A
76249515 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:76252546 original size:47 final size:47
Alignment explanation
Indices: 76252492--76252825 Score: 465
Period size: 47 Copynumber: 7.1 Consensus size: 47
76252482 TTAGGATTTT
** * * *
76252492 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCAA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
76252539 ATGTGATGAATGTGAACCTGTATATATATGCGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATG--CATATAT--GTGATAAGGCCGAATGGCCA
* *
76252590 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
76252637 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
76252684 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGG-CGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
76252730 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCC-AATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
76252776 ATGTGATGAATGTGAACATGTATATATGTGGTAAGGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
76252823 ATG
1 ATG
76252826 CGAAATGTGT
Statistics
Matches: 266, Mismatches: 15, Indels: 12
0.91 0.05 0.04
Matches are distributed among these distances:
46 86 0.32
47 132 0.50
49 11 0.04
51 37 0.14
ACGTcount: A:0.32, C:0.11, G:0.30, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:76252863 original size:139 final size:139
Alignment explanation
Indices: 76252492--76252871 Score: 412
Period size: 139 Copynumber: 2.7 Consensus size: 139
76252482 TTAGGATTTT
** *
76252492 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCAAATGTGATGAATGTGAACC
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCAAATGTGA-GAATGTG-A--
* * * * * *
76252557 TG-TATATATATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGA
62 TGACATAGATATG-G-G-TAAAGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGAGA
76252621 TAAGGCCGAATGGCCA
124 TAAGGCCGAATGGCCA
** * *
76252637 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA--A
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCAAATGTGA-GAATGTGATGA
* * *
76252700 CAT-GCGTATGTGTGATAAGGCGAATGGCCAATGTGATGAATGTGAACATGCATATATGAGATAA
65 CATAG-ATATGGGT-A-AAGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGAGATAA
76252764 GGCC-AATGGCCA
127 GGCCGAATGGCCA
* * *
76252776 ATGTGATGAATGTGAACATGTATATATGTGGTAAGGCCGAATGGCTAATGCGA-AATGTGTATGA
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCAAATGTGAGAATGTG-ATGA
* *
76252840 GATAGATATGAGGTAAAGCCGAATGGCTAATG
65 CATAGATATG-GGTAAAGCCGAATGGCCAATG
76252872 CGAAACGTGT
Statistics
Matches: 199, Mismatches: 27, Indels: 24
0.80 0.11 0.10
Matches are distributed among these distances:
137 6 0.03
138 2 0.01
139 72 0.36
140 55 0.28
141 9 0.05
144 1 0.01
145 54 0.27
ACGTcount: A:0.33, C:0.11, G:0.30, T:0.26
Consensus pattern (139 bp):
ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCAAATGTGAGAATGTGATGAC
ATAGATATGGGTAAAGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGAGATAAGGCC
GAATGGCCA
Found at i:76252935 original size:46 final size:46
Alignment explanation
Indices: 76252799--76252935 Score: 202
Period size: 46 Copynumber: 3.0 Consensus size: 46
76252789 GAACATGTAT
* *
76252799 ATATGTGGTAAGGCCGAATGGCTAATGCGAAATGTGTATGAGATAG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
* *
76252845 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
* * * *
76252891 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATG
76252936 TGTATATATA
Statistics
Matches: 81, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 81 1.00
ACGTcount: A:0.34, C:0.09, G:0.31, T:0.26
Consensus pattern (46 bp):
ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
Found at i:76254473 original size:40 final size:40
Alignment explanation
Indices: 76254419--76254774 Score: 527
Period size: 40 Copynumber: 8.9 Consensus size: 40
76254409 ATTGAGAGTT
*
76254419 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
* *
76254459 TTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
* * *
76254499 TTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTA
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
* * *
76254539 ATATGTCCGGGCTAAGTTCTGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
*
76254579 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
* *
76254619 ATATATCTGGGCTAAGT-TCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
**
76254658 ATATATCCGGGCTAAGTTTCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
*
76254698 ATATAACCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
* ** *
76254738 ATATATCCGGGTTAAACCCCGAAG-GCATTCATGCTAG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
76254775 AATTATGAGG
Statistics
Matches: 294, Mismatches: 21, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
39 49 0.17
40 245 0.83
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
Found at i:76254696 original size:119 final size:120
Alignment explanation
Indices: 76254419--76254774 Score: 529
Period size: 119 Copynumber: 3.0 Consensus size: 120
76254409 ATTGAGAGTT
** * *
76254419 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGA
1 ATATATCCGGGCTAAGTTTCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGA
* * *
76254484 GCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTA
66 GCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTA
* *
76254539 ATATGTCCGGGCTAAG-TTCTGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTTCCGAAG
1 ATATATCCGGGCTAAGTTTC-GAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAG
* * *
76254603 AGCATTCGTGCTAGTGATATATCTGGGCTAAGT-TCGAAGAGCATTCGTGCTAGTG
65 AGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTA
*
76254658 ATATATCCGGGCTAAGTTTCGAAGAGCATTCGTGCTAGTGATATAACCGGGCTAAGTCCCGAAGA
1 ATATATCCGGGCTAAGTTTCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGA
* ** *
76254723 GCATTCGTGCTAGTGATATATCCGGGTTAAACCCCGAAG-GCATTCATGCTAG
66 GCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
76254775 AATTATGAGG
Statistics
Matches: 212, Mismatches: 21, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
119 118 0.56
120 94 0.44
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (120 bp):
ATATATCCGGGCTAAGTTTCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGA
GCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTA
Found at i:76254870 original size:57 final size:57
Alignment explanation
Indices: 76254780--76254914 Score: 150
Period size: 57 Copynumber: 2.4 Consensus size: 57
76254770 GCTAGAATTA
*
76254780 TGAGGCACTGTGTGTGCAAGTTCTCCAACCGAGCACTATGTGTGCCAGATCAGTAGT
1 TGAGGCACTGTGTGTGCAAGTTCTCCAACCGAGCACTATGTGTGCCAAATCAGTAGT
* ** * * *
76254837 TGAGGCACTAG-GTGTGCGAGTTCTTTAATCGAGCGCTATGTGTGCGAAATCAGTCAG-
1 TGAGGCACT-GTGTGTGCAAGTTCTCCAACCGAGCACTATGTGTGCCAAATCAGT-AGT
*
76254894 TG-GGCACTGTGTATGCGAAGT
1 TGAGGCACTGTGTGTGC-AAGT
76254915 GTGTTTCATG
Statistics
Matches: 65, Mismatches: 9, Indels: 8
0.79 0.11 0.10
Matches are distributed among these distances:
55 1 0.02
56 11 0.17
57 50 0.77
58 3 0.05
ACGTcount: A:0.22, C:0.19, G:0.31, T:0.27
Consensus pattern (57 bp):
TGAGGCACTGTGTGTGCAAGTTCTCCAACCGAGCACTATGTGTGCCAAATCAGTAGT
Found at i:76258460 original size:47 final size:47
Alignment explanation
Indices: 76258406--76258741 Score: 465
Period size: 47 Copynumber: 7.1 Consensus size: 47
76258396 TTAGGATTTT
** * *
76258406 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCAA
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
*
76258453 ATGTGATGAATGTGAACCTATATATATATGCGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA-C-ATGTATATAT--GTGATAAGGCCGAATGGCCA
** * *
76258504 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCTGAATGGCCA
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
** *
76258551 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
* *
76258598 ATGTGATGAATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
* *
76258645 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
* * *
76258692 ATGTGATGAATGTGAACTTGTATATATGTGGTAAGGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
76258739 ATG
1 ATG
76258742 CGAAATGTGT
Statistics
Matches: 264, Mismatches: 21, Indels: 8
0.90 0.07 0.03
Matches are distributed among these distances:
47 215 0.81
49 14 0.05
50 1 0.00
51 34 0.13
ACGTcount: A:0.32, C:0.11, G:0.30, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
Found at i:76258531 original size:23 final size:23
Alignment explanation
Indices: 76258504--76258578 Score: 66
Period size: 23 Copynumber: 3.2 Consensus size: 23
76258494 CGAATGGCCA
76258504 ATGTGATGAATGTGAACATGCGT
1 ATGTGATGAATGTGAACATGCGT
* **
76258527 ATGTG-TGATAAGGCTG-A-ATGGCCA
1 ATGTGATG--AATG-TGAACAT-GCGT
76258551 ATGTGATGAATGTGAACATGCGT
1 ATGTGATGAATGTGAACATGCGT
76258574 ATGTG
1 ATGTG
76258579 TGATAAGGCC
Statistics
Matches: 39, Mismatches: 6, Indels: 14
0.66 0.10 0.24
Matches are distributed among these distances:
22 4 0.10
23 18 0.46
24 13 0.33
25 4 0.10
ACGTcount: A:0.29, C:0.09, G:0.32, T:0.29
Consensus pattern (23 bp):
ATGTGATGAATGTGAACATGCGT
Found at i:76258544 original size:25 final size:25
Alignment explanation
Indices: 76258516--76258587 Score: 64
Period size: 22 Copynumber: 3.0 Consensus size: 25
76258506 GTGATGAATG
76258516 TGAACATGCGTATGTGTGATAAGGC
1 TGAACATGCGTATGTGTGATAAGGC
* * *
76258541 TG-A-ATG-GCCA-ATGTGATGAATG-
1 TGAACATGCG-TATGTGTGAT-AAGGC
76258563 TGAACATGCGTATGTGTGATAAGGC
1 TGAACATGCGTATGTGTGATAAGGC
76258588 CGAATGGCCA
Statistics
Matches: 34, Mismatches: 6, Indels: 14
0.63 0.11 0.26
Matches are distributed among these distances:
22 9 0.26
23 8 0.24
24 8 0.24
25 9 0.26
ACGTcount: A:0.29, C:0.11, G:0.32, T:0.28
Consensus pattern (25 bp):
TGAACATGCGTATGTGTGATAAGGC
Found at i:76258851 original size:46 final size:46
Alignment explanation
Indices: 76258715--76258851 Score: 193
Period size: 46 Copynumber: 3.0 Consensus size: 46
76258705 GAACTTGTAT
* *
76258715 ATATGTGGTAAGGCCGAATGGCTAATGCGAAATGTGTATGAGATAG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
* * *
76258761 ATATGAGGTAAAGCCGAATGGCCAATGCGAAACGTGTATGAGATGG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
* * * *
76258807 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATG
76258852 TGTATATATA
Statistics
Matches: 79, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
46 79 1.00
ACGTcount: A:0.34, C:0.09, G:0.31, T:0.25
Consensus pattern (46 bp):
ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
Found at i:76263739 original size:30 final size:30
Alignment explanation
Indices: 76263705--76263765 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
76263695 TCCTTAACTC
76263705 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
76263735 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
76263765 A
1 A
76263766 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:76265644 original size:41 final size:43
Alignment explanation
Indices: 76265612--76265692 Score: 110
Period size: 43 Copynumber: 1.9 Consensus size: 43
76265602 CCTGAACTCA
* *
76265612 TTCACCGACATT-TGGTCTGCTAGGCTTGAAGCCCGATATCAT
1 TTCACCGACATTATAGCCTGCTAGGCTTGAAGCCCGATATCAT
* **
76265654 TTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGATA
1 TTCACCGACATTATAGCCTGCTAGGCTTGAAGCCCGATA
76265693 ATATTATTCA
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
42 11 0.33
43 22 0.67
ACGTcount: A:0.22, C:0.30, G:0.22, T:0.26
Consensus pattern (43 bp):
TTCACCGACATTATAGCCTGCTAGGCTTGAAGCCCGATATCAT
Found at i:76265686 original size:43 final size:44
Alignment explanation
Indices: 76265628--76265740 Score: 124
Period size: 44 Copynumber: 2.6 Consensus size: 44
76265618 GACATTTGGT
* * *
76265628 CTGCTAGGCTTGAAGCCCGATATCA-T-TTCACCGGCATTATAGC
1 CTGCTAGGCTCGAAGCCCGATATCATTATTCACCAGC-TTAAAGC
*
76265671 CTGCTAGGCCCGAAGCCCGATAAT-ATTATTCACCAGCTTAAAGC
1 CTGCTAGGCTCGAAGCCCGAT-ATCATTATTCACCAGCTTAAAGC
* *
76265715 TTGCTAGGCTCAAAGCCCGAATATCA
1 CTGCTAGGCTCGAAGCCCG-ATATCA
76265741 CCATTATAAA
Statistics
Matches: 58, Mismatches: 7, Indels: 8
0.79 0.10 0.11
Matches are distributed among these distances:
43 20 0.34
44 27 0.47
45 11 0.19
ACGTcount: A:0.27, C:0.28, G:0.19, T:0.25
Consensus pattern (44 bp):
CTGCTAGGCTCGAAGCCCGATATCATTATTCACCAGCTTAAAGC
Found at i:76265890 original size:28 final size:28
Alignment explanation
Indices: 76265866--76265958 Score: 123
Period size: 28 Copynumber: 3.3 Consensus size: 28
76265856 TTTGCACATG
*
76265866 AAGTGTCATTCTCAATATCTCGCACACT
1 AAGTGCCATTCTCAATATCTCGCACACT
* *
76265894 AAGTGCCATTCTCAATATTTCGTACACT
1 AAGTGCCATTCTCAATATCTCGCACACT
* *
76265922 AAGTGCCATTCTCAATATTTCGTACACT
1 AAGTGCCATTCTCAATATCTCGCACACT
* *
76265950 GAGTACCAT
1 AAGTGCCAT
76265959 ATTTGATTGC
Statistics
Matches: 60, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 60 1.00
ACGTcount: A:0.29, C:0.26, G:0.12, T:0.33
Consensus pattern (28 bp):
AAGTGCCATTCTCAATATCTCGCACACT
Found at i:76265913 original size:56 final size:56
Alignment explanation
Indices: 76265852--76265958 Score: 135
Period size: 56 Copynumber: 1.9 Consensus size: 56
76265842 GAATCATTCG
* * *
76265852 ATATTTTGCACA-TGAAGTGTCATTCTCAATATCTCGCACACTAAGTGCCATTCTCA
1 ATATTTCGCACACT-AAGTGCCATTCTCAATATCTCGCACACTAAGTACCATTCTCA
* * * *
76265908 ATATTTCGTACACTAAGTGCCATTCTCAATATTTCGTACACTGAGTACCAT
1 ATATTTCGCACACTAAGTGCCATTCTCAATATCTCGCACACTAAGTACCAT
76265959 ATTTGATTGC
Statistics
Matches: 43, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
56 42 0.98
57 1 0.02
ACGTcount: A:0.29, C:0.24, G:0.12, T:0.35
Consensus pattern (56 bp):
ATATTTCGCACACTAAGTGCCATTCTCAATATCTCGCACACTAAGTACCATTCTCA
Found at i:76280399 original size:9 final size:9
Alignment explanation
Indices: 76280385--76280421 Score: 74
Period size: 9 Copynumber: 4.1 Consensus size: 9
76280375 TTTTTTGGAT
76280385 GTTTATGAA
1 GTTTATGAA
76280394 GTTTATGAA
1 GTTTATGAA
76280403 GTTTATGAA
1 GTTTATGAA
76280412 GTTTATGAA
1 GTTTATGAA
76280421 G
1 G
76280422 CATATACTAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 28 1.00
ACGTcount: A:0.32, C:0.00, G:0.24, T:0.43
Consensus pattern (9 bp):
GTTTATGAA
Found at i:76284009 original size:46 final size:46
Alignment explanation
Indices: 76283942--76284114 Score: 172
Period size: 46 Copynumber: 3.7 Consensus size: 46
76283932 TTTGGCATCT
76283942 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATTCGAACGTCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATTCGAACGTCC
* * * * *
76283988 GAACTCGTTGAGTTGAGTCCGAGTTCA-TGA--GATGTAACTAGGCATCT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGAT-T--CGA-ACGTCC
* * * * *
76284035 GAGCTCGTTGAGTTGAGTCCGAGTTCTCTTGTGGATGCGAACGCCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATTCGAACGTCC
* * *
76284081 GAGCTCATTGAGTTGAGTCCGAGTTCGCTTATGG
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
76284115 GTGGGTTACA
Statistics
Matches: 102, Mismatches: 18, Indels: 14
0.76 0.13 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 62 0.61
47 30 0.29
48 1 0.01
50 3 0.03
ACGTcount: A:0.20, C:0.20, G:0.29, T:0.30
Consensus pattern (46 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATTCGAACGTCC
Found at i:76284094 original size:93 final size:93
Alignment explanation
Indices: 76283935--76284106 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
76283925 CAGATATTTT
* * *
76283935 GGCATCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATTCGAACGTCCGAACTCGTTGAG
1 GGCATCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAG
76284000 TTGAGTCCGAGTTCATGAGATGTAACTA
66 TTGAGTCCGAGTTCATGAGATGTAACTA
* * * *
76284028 GGCATCTGAGCTCGTTGAGTTGAGTCCGAGTTCTCTTGTGGATGCGAACGCCCGAGCTCATTGAG
1 GGCATCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAG
76284093 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
76284107 GCTTATGGGT
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.20, C:0.21, G:0.29, T:0.30
Consensus pattern (93 bp):
GGCATCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAG
TTGAGTCCGAGTTCATGAGATGTAACTA
Found at i:76287932 original size:20 final size:20
Alignment explanation
Indices: 76287904--76287941 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
76287894 ACTAGGACTA
76287904 TGTGATCTGAGCTCATGAGT
1 TGTGATCTGAGCTCATGAGT
* *
76287924 TGTGGTCTGAGTTCATGA
1 TGTGATCTGAGCTCATGA
76287942 TATATGTACA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.18, C:0.13, G:0.32, T:0.37
Consensus pattern (20 bp):
TGTGATCTGAGCTCATGAGT
Found at i:76292771 original size:7 final size:7
Alignment explanation
Indices: 76292759--76292788 Score: 60
Period size: 7 Copynumber: 4.3 Consensus size: 7
76292749 CACATTTCTA
76292759 CTCATCC
1 CTCATCC
76292766 CTCATCC
1 CTCATCC
76292773 CTCATCC
1 CTCATCC
76292780 CTCATCC
1 CTCATCC
76292787 CT
1 CT
76292789 AATCATTCAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.13, C:0.57, G:0.00, T:0.30
Consensus pattern (7 bp):
CTCATCC
Found at i:76292798 original size:21 final size:21
Alignment explanation
Indices: 76292759--76292799 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
76292749 CACATTTCTA
* *
76292759 CTCATCCCTCATCCCTCATCC
1 CTCATCCCTAATCACTCATCC
*
76292780 CTCATCCCTAATCATTCATC
1 CTCATCCCTAATCACTCATC
76292800 ATTCTCTCCT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.20, C:0.49, G:0.00, T:0.32
Consensus pattern (21 bp):
CTCATCCCTAATCACTCATCC
Found at i:76303877 original size:46 final size:46
Alignment explanation
Indices: 76303727--76303900 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
76303717 TGTAACCCGC
*
76303727 CCATAAGTGAACTCGGACTCAACTCAACGAGCT-GGGCATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
76303772 CCATAAGTGAACTC-GACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA---C-A-TTCGCAT
* * *
76303821 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
76303864 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
76303901 TGCCCAAATA
Statistics
Matches: 110, Mismatches: 8, Indels: 21
0.79 0.06 0.15
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 20 0.18
45 18 0.16
46 35 0.32
47 23 0.21
48 2 0.02
49 4 0.04
50 2 0.02
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:76306309 original size:29 final size:29
Alignment explanation
Indices: 76306272--76306355 Score: 100
Period size: 29 Copynumber: 2.9 Consensus size: 29
76306262 GATAACAAGA
*
76306272 AAACC-GAATAAAGAAATCCAAGATAGAG
1 AAACCAGAATAAAGAAATCCAAGATAAAG
76306300 AAACCAGAATAAAGAAATCC-AGAATAAAG
1 AAACCAGAATAAAGAAATCCAAG-ATAAAG
* * *
76306329 AGATCCAGGATAAAGAAACCCAAGATA
1 A-AACCAGAATAAAGAAATCCAAGATA
76306356 CGATACTATG
Statistics
Matches: 48, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
28 7 0.15
29 20 0.42
30 19 0.40
31 2 0.04
ACGTcount: A:0.57, C:0.15, G:0.17, T:0.11
Consensus pattern (29 bp):
AAACCAGAATAAAGAAATCCAAGATAAAG
Found at i:76306321 original size:15 final size:15
Alignment explanation
Indices: 76306268--76306346 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
76306258 CAAAGATAAC
*
76306268 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
76306282 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
*
76306297 GAGAAA-CCAGAATA
1 AAGAAATCCAGAATA
76306311 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
76306326 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
76306341 AAGAAA
1 AAGAAA
76306347 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
14 20 0.36
15 35 0.64
ACGTcount: A:0.59, C:0.13, G:0.18, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:76306355 original size:15 final size:15
Alignment explanation
Indices: 76306279--76306355 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
76306269 AGAAAACCGA
76306279 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
*
76306294 ATAGAGAAA-CC-AG
1 ATAAAGAAATCCAAG
76306307 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
76306322 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
76306338 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
76306353 ATA
1 ATA
76306356 CGATACTATG
Statistics
Matches: 52, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
13 2 0.04
14 10 0.19
15 39 0.75
16 1 0.02
ACGTcount: A:0.57, C:0.14, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:76312550 original size:27 final size:26
Alignment explanation
Indices: 76312492--76312604 Score: 145
Period size: 27 Copynumber: 4.2 Consensus size: 26
76312482 AGGAAGCGTC
* *
76312492 CTGGTGGCTATGCCACAAATTATCTGAT
1 CTGGTGGCTCTGCCAC--ATTATCTGTT
76312520 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGTT
76312547 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTGT-T
* *
76312575 CTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGTT
76312601 CTGG
1 CTGG
76312605 CAGCCATGCT
Statistics
Matches: 78, Mismatches: 4, Indels: 8
0.87 0.04 0.09
Matches are distributed among these distances:
26 7 0.09
27 39 0.50
28 32 0.41
ACGTcount: A:0.17, C:0.24, G:0.23, T:0.36
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGTT
Found at i:76312577 original size:55 final size:54
Alignment explanation
Indices: 76312492--76312604 Score: 165
Period size: 55 Copynumber: 2.1 Consensus size: 54
76312482 AGGAAGCGTC
*
76312492 CTGGTGGCTATGCCACAAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAAATTATCTGATCTGGTGACTCTGCCACAT-TATCTGTT
* * *
76312547 CTGGTGGCTCTGCCAC-GATTATCTGTATCTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTATGCCACAAATTATCTG-ATCTGGTGACTCTGCCACATTATCTGTT
76312601 CTGG
1 CTGG
76312605 CAGCCATGCT
Statistics
Matches: 53, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
54 20 0.38
55 33 0.62
ACGTcount: A:0.17, C:0.24, G:0.23, T:0.36
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAAATTATCTGATCTGGTGACTCTGCCACATTATCTGTT
Found at i:76315135 original size:13 final size:14
Alignment explanation
Indices: 76315114--76315152 Score: 62
Period size: 13 Copynumber: 2.9 Consensus size: 14
76315104 AGAACATATG
76315114 CTCTTTTTTTTTTT
1 CTCTTTTTTTTTTT
*
76315128 CT-TTTTTTTCTTT
1 CTCTTTTTTTTTTT
76315141 CTCTTTTTTTTT
1 CTCTTTTTTTTT
76315153 CATGAGCATT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
13 12 0.55
14 10 0.45
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (14 bp):
CTCTTTTTTTTTTT
Found at i:76315145 original size:15 final size:13
Alignment explanation
Indices: 76315117--76315152 Score: 54
Period size: 15 Copynumber: 2.6 Consensus size: 13
76315107 ACATATGCTC
76315117 TTTTTTTTTTTCT
1 TTTTTTTTTTTCT
76315130 TTTTTTTCTTTCTCT
1 TTTTTTT-TTT-TCT
76315145 TTTTTTTT
1 TTTTTTTT
76315153 CATGAGCATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 7 0.33
14 4 0.19
15 10 0.48
ACGTcount: A:0.00, C:0.11, G:0.00, T:0.89
Consensus pattern (13 bp):
TTTTTTTTTTTCT
Found at i:76315387 original size:118 final size:117
Alignment explanation
Indices: 76315180--76315414 Score: 461
Period size: 118 Copynumber: 2.0 Consensus size: 117
76315170 ATGTACTACA
76315180 ATTTTTTGAGCATTTGATACTCCTTTTCAACTCCCCAAACTTATTTTCAAAGAATATTCTGATTA
1 ATTTTTTGAGCATTTGATACTCCTTTTCAACTCCCCAAACTTATTTTCAAAGAATATTCTGATTA
76315245 GTACCAAGTCTAGTGTTTGGGACAATTTAAAGATAATTAGGAGAAAAGTGAT
66 GTACCAAGTCTAGTGTTTGGGACAATTTAAAGATAATTAGGAGAAAAGTGAT
76315297 ATTTTTTGAGCATTTGATACTCCTTTTCAACTCCCCCAAACTTATTTTCAAAGAATATTCTGATT
1 ATTTTTTGAGCATTTGATACTCCTTTTCAACT-CCCCAAACTTATTTTCAAAGAATATTCTGATT
76315362 AGTACCAAGTCTAGTGTTTGGGACAATTTAAAGATAATTAGGAGAAAAGTGAT
65 AGTACCAAGTCTAGTGTTTGGGACAATTTAAAGATAATTAGGAGAAAAGTGAT
76315415 GGCTAAATAT
Statistics
Matches: 117, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
117 32 0.27
118 85 0.73
ACGTcount: A:0.33, C:0.15, G:0.15, T:0.37
Consensus pattern (117 bp):
ATTTTTTGAGCATTTGATACTCCTTTTCAACTCCCCAAACTTATTTTCAAAGAATATTCTGATTA
GTACCAAGTCTAGTGTTTGGGACAATTTAAAGATAATTAGGAGAAAAGTGAT
Found at i:76319818 original size:24 final size:24
Alignment explanation
Indices: 76319788--76319866 Score: 76
Period size: 24 Copynumber: 3.2 Consensus size: 24
76319778 TATATAACGA
76319788 GAAGCTCGAAAGAGCCATAATCAG
1 GAAGCTCGAAAGAGCCATAATCAG
*
76319812 GAAGCTC-ATACGAGCCAATAA-C-G
1 GAAGCTCGA-AAGAGCC-ATAATCAG
76319835 GATAGCTCTG-AAGAGCCATTAATCAG
1 GA-AGCTC-GAAAGAGCCA-TAATCAG
76319861 GAAGCT
1 GAAGCT
76319867 TCAGATAGCC
Statistics
Matches: 45, Mismatches: 2, Indels: 15
0.73 0.03 0.24
Matches are distributed among these distances:
23 5 0.11
24 28 0.62
25 9 0.20
26 3 0.07
ACGTcount: A:0.38, C:0.22, G:0.24, T:0.16
Consensus pattern (24 bp):
GAAGCTCGAAAGAGCCATAATCAG
Found at i:76334998 original size:46 final size:46
Alignment explanation
Indices: 76334931--76335100 Score: 179
Period size: 46 Copynumber: 3.7 Consensus size: 46
76334921 TGTAACCCGC
76334931 CCATAAGCGAACTCGGACTCAACTCAACGAGCTTGGGCATTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTTGGGCATTTACAT
* * *
76334977 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTTGG--G-C-ATTTACAT
* **
76335027 CTC-T---CGAACTCGGACTCAACTCAACGAG-TTCGGACATTCGCAT
1 C-CATAAGCGAACTCGGACTCAACTCAACGAGCTT-GGGCATTTACAT
* *
76335070 CCATAAGTGAACTCAGACTCAACTCAACGAG
1 CCATAAGCGAACTCGGACTCAACTCAACGAG
76335101 TTCGGATGCT
Statistics
Matches: 103, Mismatches: 11, Indels: 20
0.77 0.08 0.15
Matches are distributed among these distances:
42 1 0.01
43 7 0.07
44 1 0.01
46 57 0.55
47 25 0.24
48 1 0.01
49 1 0.01
50 9 0.09
51 1 0.01
ACGTcount: A:0.31, C:0.29, G:0.19, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTTGGGCATTTACAT
Found at i:76335050 original size:93 final size:93
Alignment explanation
Indices: 76334938--76335109 Score: 283
Period size: 93 Copynumber: 1.8 Consensus size: 93
76334928 CGCCCATAAG
* * *
76334938 CGAACTCGGACTCAACTCAACGAGCTT-GGGCATTTACATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAG-TTCGGACATTCACATCCATAAGTGAACTCAGACTCAACTC
76335002 AACGAGCTCGGATGCCTAGTTACATCTCT
65 AACGAGCTCGGATGCCTAGTTACATCTCT
*
76335031 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCACATCCATAAGTGAACTCAGACTCAACTCA
*
76335096 ACGAGTTCGGATGC
66 ACGAGCTCGGATGC
76335110 TCAAACATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
92 2 0.03
93 71 0.97
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGTTCGGACATTCACATCCATAAGTGAACTCAGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCT
Found at i:76335125 original size:46 final size:47
Alignment explanation
Indices: 76334931--76335119 Score: 163
Period size: 46 Copynumber: 4.0 Consensus size: 47
76334921 TGTAACCCGC
* **
76334931 CCATAAGCGAACTCGGACTCAACTCAACGAGCTT-GG--GCATTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAG-TTCGGATGC-TCAACAT
* * **
76334977 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACAT
* *** *** *
76335023 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTC-GCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACAT
*
76335070 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGATGCTCAAACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-AACAT
76335118 CC
1 CC
76335120 TAGTGACATG
Statistics
Matches: 111, Mismatches: 25, Indels: 12
0.75 0.17 0.08
Matches are distributed among these distances:
45 1 0.01
46 69 0.62
47 33 0.30
48 8 0.07
ACGTcount: A:0.30, C:0.30, G:0.19, T:0.22
Consensus pattern (47 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACAT
Found at i:76337522 original size:15 final size:16
Alignment explanation
Indices: 76337500--76337577 Score: 92
Period size: 15 Copynumber: 5.1 Consensus size: 16
76337490 TAAGAAAACC
*
76337500 GAATAAAGAAATCTAA
1 GAATAAAGAAATCCAA
*
76337516 G-ATAAAGAAA-CCCA
1 GAATAAAGAAATCCAA
76337530 GAATAAAGAAATCC-A
1 GAATAAAGAAATCCAA
*
76337545 GAATAAAGAGATCCAA
1 GAATAAAGAAATCCAA
*
76337561 G-ATAAAGAAACCCAA
1 GAATAAAGAAATCCAA
76337576 GA
1 GA
76337578 TACGATACTA
Statistics
Matches: 53, Mismatches: 5, Indels: 8
0.80 0.08 0.12
Matches are distributed among these distances:
14 3 0.06
15 45 0.85
16 5 0.09
ACGTcount: A:0.59, C:0.14, G:0.15, T:0.12
Consensus pattern (16 bp):
GAATAAAGAAATCCAA
Found at i:76337551 original size:30 final size:30
Alignment explanation
Indices: 76337491--76337579 Score: 94
Period size: 30 Copynumber: 3.0 Consensus size: 30
76337481 CAAAGATAAT
*
76337491 AAGAAAACC-GAATAAAGAAATCTAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
*
76337520 AAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * *
76337550 AAGAGATCCA-AGATAAAGAAACCCAAGATA
1 AAGAAAACCAGA-ATAAAGAAATCCAAGATA
76337580 CGATACTATG
Statistics
Matches: 51, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
29 11 0.22
30 38 0.75
31 2 0.04
ACGTcount: A:0.60, C:0.15, G:0.15, T:0.11
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:76340577 original size:46 final size:44
Alignment explanation
Indices: 76340519--76340684 Score: 143
Period size: 46 Copynumber: 3.6 Consensus size: 44
76340509 CCATAAGCAA
76340519 AACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTG
1 AACTCGGACTCAACTCAACGAGCTCGGGC-TTCG-ATCCATAAGTG
* * * * * ***
76340565 AACTCGGACTCAACTCAACGAGCTCAGATGCCTAGTTACATCTCTCG
1 AACTCGGACTCAACTCAACGAGCTC-G-GGCTTCGATCCATAAGT-G
* *
76340612 AACTCGGACTCAACTCAACGAGTTCGGACATTCGTATCCATAAGTG
1 AACTCGGACTCAACTCAACGAGCTCGGGC-TTCG-ATCCATAAGTG
** * *
76340658 AACTTAGACTCAACTGAACGAGTTCGG
1 AACTCGGACTCAACTCAACGAGCTCGG
76340685 ATGCCCAAAC
Statistics
Matches: 94, Mismatches: 21, Indels: 10
0.75 0.17 0.08
Matches are distributed among these distances:
45 1 0.01
46 58 0.62
47 33 0.35
48 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.22
Consensus pattern (44 bp):
AACTCGGACTCAACTCAACGAGCTCGGGCTTCGATCCATAAGTG
Found at i:76340631 original size:93 final size:93
Alignment explanation
Indices: 76340519--76340689 Score: 261
Period size: 93 Copynumber: 1.8 Consensus size: 93
76340509 CCATAAGCAA
* * *
76340519 AACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 AACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAAC
76340584 GAGCTCAGATGCCTAGTTACATCTCTCG
66 GAGCTCAGATGCCTAGTTACATCTCTCG
* * * *
76340612 AACTCGGACTCAACTCAACGAGTTCGGACATTCGTATCCATAAGTGAACTTAGACTCAACTGAAC
1 AACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAAC
* *
76340677 GAGTTCGGATGCC
66 GAGCTCAGATGCC
76340690 CAAACATCCT
Statistics
Matches: 69, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
93 69 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
AACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAAC
GAGCTCAGATGCCTAGTTACATCTCTCG
Found at i:76344899 original size:79 final size:79
Alignment explanation
Indices: 76344700--76345000 Score: 414
Period size: 79 Copynumber: 3.8 Consensus size: 79
76344690 TCGGATGATA
* * **
76344700 ACCGGGCTAAGTCCCG-AGAGCATTTGAGCTAGTGGCTA-ATTCCGGGCTAAGTCCCGAAGGCA-
1 ACCGGGCTAAGTCCCGAAG-GCATTTGTGCAAGTTACTATA-TCCGGGCTAAGTCCCGAAGGCAT
* *
76344762 TTCGTGCGAGCTACTAT
64 TTC-TGCGAGTTATTAT
* * * *
76344779 ATCTGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTATTATATCCGGGCTAAGTCCCGAAGGCATT
1 A-CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCATT
76344844 TCTGCGAGTTATTAT
65 TCTGCGAGTTATTAT
*
76344859 ACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCAAAGGCATTT
1 ACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTT
*
76344924 GTGCGAGTTATTAT
66 CTGCGAGTTATTAT
*
76344938 ACCGGGCTAAGTCCCGAAGG-ATTTGTGCAAGTTACTATAACCGGG-TAAGTCCCGAAGGCATTT
1 ACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTT
76345001 GAGCTAGTGG
Statistics
Matches: 201, Mismatches: 17, Indels: 10
0.88 0.07 0.04
Matches are distributed among these distances:
77 17 0.08
78 24 0.12
79 93 0.46
80 61 0.30
81 6 0.03
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (79 bp):
ACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTT
CTGCGAGTTATTAT
Found at i:76345015 original size:39 final size:40
Alignment explanation
Indices: 76344701--76345024 Score: 401
Period size: 40 Copynumber: 8.2 Consensus size: 40
76344691 CGGATGATAA
* * **
76344701 CCGGGCTAAGTCCCG-AGAGCATTTGAGCTAGTGGCTA-ATT
1 CCGGGCTAAGTCCCGAAG-GCATTTGTGCGAGTTACTATA-T
* *
76344741 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
76344781 CTGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTATTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
76344821 CCGGGCTAAGTCCCGAAGGCATTTCTGCGAGTTATTATA-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
76344860 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
76344900 CCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTTATTATA-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
76344939 CCGGGCTAAGTCCCGAAGG-ATTTGTGCAAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * **
76344978 CCGGG-TAAGTCCCGAAGGCATTTGAGCTAGTGGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
76345017 CC-GGCTAA
1 CCGGGCTAA
76345025 ACTCCGAAGG
Statistics
Matches: 252, Mismatches: 26, Indels: 13
0.87 0.09 0.04
Matches are distributed among these distances:
38 32 0.13
39 79 0.31
40 138 0.55
41 3 0.01
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:76352930 original size:40 final size:39
Alignment explanation
Indices: 76352875--76353200 Score: 365
Period size: 40 Copynumber: 8.2 Consensus size: 39
76352865 TGGATGATAA
* * *
76352875 CCGGGCTAAGTCCCG-AGAGCATTTGAGCTAGTGGCTA-ATT
1 CCGGGCTAAGTCCCGAAG-GCATTTGTGCAAGT-ACTATA-T
* *
76352915 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAG-TACTATAT
* * *
76352955 CCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGCTATTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAG-TACTATAT
*
76352995 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTATTATA-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAG-TACTATAT
76353034 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAG-TACTATAT
* * *
76353074 CCGAGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATA-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAG-TACTATAT
* *
76353113 CCGGGCTAAGTCCCGAACGCATTTGTGCAAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAG-TACTATAT
* * * *
76353153 CCGGGCTAAGTCTCGAAGGCATTTGAGCTAGTGGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGT-ACTATAT
76353193 CC-GGCTAA
1 CCGGGCTAA
76353201 ACTCCGAAGG
Statistics
Matches: 256, Mismatches: 24, Indels: 13
0.87 0.08 0.04
Matches are distributed among these distances:
39 80 0.31
40 172 0.67
41 4 0.02
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTACTATAT
Found at i:76353059 original size:79 final size:79
Alignment explanation
Indices: 76352874--76353177 Score: 423
Period size: 79 Copynumber: 3.8 Consensus size: 79
76352864 TTGGATGATA
* * **
76352874 ACCGGGCTAAGTCCCG-AGAGCATTTGAGCTAGTGGCTA-ATTCCGGGCTAAGTCCCGAAGGCAT
1 ACCGGGCTAAGTCCCGAAG-GCATTTGTGCAAGTTACTATA-TCCGGGCTAAGTCCCGAAGGCAT
* * *
76352937 TCGTGCGAGCTACTAT
64 TTGTGCGAGTTATTAT
* * * *
76352953 ATCCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGCTATTATATCCGGGCTAAGTCCCGAAGGCATT
1 A-CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCATT
*
76353018 TGTGCAAGTTATTAT
65 TGTGCGAGTTATTAT
*
76353033 ACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGAGCTAAGTCCCGAAGGCATTT
1 ACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTT
76353098 GTGCGAGTTATTAT
66 GTGCGAGTTATTAT
* * *
76353112 ACCGGGCTAAGTCCCGAACGCATTTGTGCAAGTTACTATAACCGGGCTAAGTCTCGAAGGCATTT
1 ACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTT
76353177 G
66 G
76353178 AGCTAGTGGC
Statistics
Matches: 201, Mismatches: 21, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
79 135 0.67
80 63 0.31
81 3 0.01
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (79 bp):
ACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTT
GTGCGAGTTATTAT
Found at i:76353087 original size:119 final size:117
Alignment explanation
Indices: 76352874--76353200 Score: 431
Period size: 119 Copynumber: 2.8 Consensus size: 117
76352864 TTGGATGATA
* * ** * *
76352874 ACCGGGCTAAGTCCCG-AGAGCATTTGAGCTAGTGGCTAATTCCGGGCTAAGTCCCGAAGGCATT
1 ACCGGGCTAAGTCCCGAAG-GCATTTGTGCAAGT-TATTATACCGGGCTAAGTCCCGAAGGCATT
* * * *
76352938 CGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGCTATTAT
64 TGTGCAAGTTACTATATCC-GGCTAAGTCCCGAAGGCATTTGTGCGAGCTATTAT
76352993 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTATTATACCGGGCTAAGTCCCGAAGGCATTT
1 A-CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTATTATACCGGGCTAAGTCCCGAAGGCATTT
*
76353058 GTGCAAGTTACTATATCCGAGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTAT
65 GTGCAAGTTACTATATCCG-GCTAAGTCCCGAAGGCATTTGTGCGAGCTATTAT
* * *
76353112 ACCGGGCTAAGTCCCGAACGCATTTGTGCAAGTTACTATAACCGGGCTAAGTCTCGAAGGCATTT
1 ACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTATTAT-ACCGGGCTAAGTCCCGAAGGCATTT
* * **
76353177 GAGCTAGTGGCTATATCCGGCTAA
65 GTGCAAGTTACTATATCCGGCTAA
76353201 ACTCCGAAGG
Statistics
Matches: 186, Mismatches: 18, Indels: 9
0.87 0.08 0.04
Matches are distributed among these distances:
118 42 0.23
119 115 0.62
120 27 0.15
121 2 0.01
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (117 bp):
ACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTATTATACCGGGCTAAGTCCCGAAGGCATTTG
TGCAAGTTACTATATCCGGCTAAGTCCCGAAGGCATTTGTGCGAGCTATTAT
Found at i:76356009 original size:40 final size:40
Alignment explanation
Indices: 76355947--76356167 Score: 252
Period size: 40 Copynumber: 5.5 Consensus size: 40
76355937 TATTCGAATG
* ** * *
76355947 ATATCCGGGCTAATTCCTGAAGGCTTTTGTGCTAGTGACT
1 ATATCCGAGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
* * *
76355987 ATATCCGAACTAAGATCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGAGCTAAGACCCGAAGGCATTTGTGCTAG-TGACT
* *
76356027 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGAGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
* *
76356067 ATATCCGAGCTAAGTCCCGAAGGCATTTATGCTAGTGACT
1 ATATCCGAGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
* * *
76356107 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TT
1 ATATCCGAGCTAAGACCCGAAGGCATTTGTGCTAG-TGACT
76356147 ATATCCG-GCTAA-ATCCCGAAG
1 ATATCCGAGCTAAGA-CCCGAAG
76356168 ATACTTGGGT
Statistics
Matches: 155, Mismatches: 22, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
38 1 0.01
39 13 0.08
40 137 0.88
41 4 0.03
ACGTcount: A:0.25, C:0.22, G:0.25, T:0.27
Consensus pattern (40 bp):
ATATCCGAGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
Found at i:76356150 original size:80 final size:80
Alignment explanation
Indices: 76355947--76356167 Score: 288
Period size: 80 Copynumber: 2.8 Consensus size: 80
76355937 TATTCGAATG
** * * *
76355947 ATATCCGGGCTAATTCCTGAAGGCTTTTGTGCTAGTGACTATATCCGAACTAAGAT-CCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACTATATCCGAGCTAAG-TCCCGAAGGC
*
76356011 ATTTGTGCGAGTTGCT
65 ATTTATGCGAGTTGCT
*
76356027 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACTATATCCGAGCTAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACTATATCCGAGCTAAGTCCCGAAGGCA
*
76356092 TTTATGCTAG-TGACT
66 TTTATGCGAGTTG-CT
* * *
76356107 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATATCCG-GCTAAATCCCGAAG
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGACTATATCCGAGCTAAGTCCCGAAG
76356168 ATACTTGGGT
Statistics
Matches: 126, Mismatches: 12, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
79 16 0.13
80 109 0.87
81 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.25, T:0.27
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACTATATCCGAGCTAAGTCCCGAAGGCA
TTTATGCGAGTTGCT
Found at i:76358660 original size:93 final size:93
Alignment explanation
Indices: 76358548--76358717 Score: 261
Period size: 93 Copynumber: 1.8 Consensus size: 93
76358538 GCCCCTAAGT
* * **
76358548 GAACTCGGACTCAACTCAACGAGCTC-AGACGTTCGCATCCATAAGTGAACTCGGACACAACTCA
1 GAACTCGGACTCAACTCAACAAGCTCGA-ACATTCGCATCCATAAGTGAACTCAAACACAACTCA
76358612 ACGAGTTCGGATGCCTAGTTACATCTCAC
65 ACGAGTTCGGATGCCTAGTTACATCTCAC
* * *
76358641 GAACTCGGACTCAACTCAACAAGTTCGAACATTCGCATCCGTAAGTGAACTCAAACTCAACTCAA
1 GAACTCGGACTCAACTCAACAAGCTCGAACATTCGCATCCATAAGTGAACTCAAACACAACTCAA
76358706 CGAGTTCGGATG
66 CGAGTTCGGATG
76358718 TTCAACCATC
Statistics
Matches: 69, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
93 68 0.99
94 1 0.01
ACGTcount: A:0.32, C:0.29, G:0.19, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACAAGCTCGAACATTCGCATCCATAAGTGAACTCAAACACAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:76374996 original size:21 final size:19
Alignment explanation
Indices: 76374962--76375023 Score: 54
Period size: 21 Copynumber: 2.9 Consensus size: 19
76374952 TAAGTTATGT
76374962 ATAATAATATAATATGAATAAA
1 ATAATAA-A-AATAT-AATAAA
76374984 AT-ATAAGGAAATATAATATAAA
1 ATAATAA--AAATAT-A-ATAAA
76375006 ATAATAAAAATATAATAA
1 ATAATAAAAATATAATAA
76375024 GTATTTTGCA
Statistics
Matches: 35, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
19 4 0.11
20 1 0.03
21 16 0.46
22 10 0.29
23 4 0.11
ACGTcount: A:0.66, C:0.00, G:0.05, T:0.29
Consensus pattern (19 bp):
ATAATAAAAATATAATAAA
Found at i:76375084 original size:22 final size:22
Alignment explanation
Indices: 76375048--76375097 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 22
76375038 AAAATATGGT
* *
76375048 AAAATAATTAGTATA-AAAAAA
1 AAAATAAATAATATATAAAAAA
*
76375069 CAAAATAAATAATATATAATAAA
1 -AAAATAAATAATATATAAAAAA
76375092 AAAATA
1 AAAATA
76375098 TATGAGAAAG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
22 19 0.79
23 5 0.21
ACGTcount: A:0.72, C:0.02, G:0.02, T:0.24
Consensus pattern (22 bp):
AAAATAAATAATATATAAAAAA
Found at i:76375152 original size:17 final size:17
Alignment explanation
Indices: 76375132--76375182 Score: 66
Period size: 18 Copynumber: 2.9 Consensus size: 17
76375122 GAATATTGAA
76375132 TAATAAAATATAGTATG
1 TAATAAAATATAGTATG
76375149 TAATAAAAATATAGTATG
1 TAAT-AAAATATAGTATG
* * *
76375167 AAATATAATATGGTAT
1 TAATAAAATATAGTAT
76375183 ACGTATAATA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
17 14 0.47
18 16 0.53
ACGTcount: A:0.53, C:0.00, G:0.12, T:0.35
Consensus pattern (17 bp):
TAATAAAATATAGTATG
Found at i:76375560 original size:14 final size:14
Alignment explanation
Indices: 76375514--76375592 Score: 70
Period size: 14 Copynumber: 5.5 Consensus size: 14
76375504 AATACAATTT
76375514 TATAAAATATAT-A
1 TATAAAATATATAA
*
76375527 TAAAGAAATATATAA
1 TATA-AAATATATAA
*
76375542 AATAAAATATATAA
1 TATAAAATATATAA
* *
76375556 TATAATATAATTTATA
1 TATAAAAT-ATATA-A
* *
76375572 GATAAAATATATGA
1 TATAAAATATATAA
76375586 TATAAAA
1 TATAAAA
76375593 AATAATGGAT
Statistics
Matches: 51, Mismatches: 11, Indels: 7
0.74 0.16 0.10
Matches are distributed among these distances:
13 3 0.06
14 31 0.61
15 10 0.20
16 7 0.14
ACGTcount: A:0.62, C:0.00, G:0.04, T:0.34
Consensus pattern (14 bp):
TATAAAATATATAA
Found at i:76377433 original size:16 final size:17
Alignment explanation
Indices: 76377412--76377452 Score: 57
Period size: 17 Copynumber: 2.5 Consensus size: 17
76377402 ATATAAATAT
76377412 AAATTAAAAA-GTTAAA
1 AAATTAAAAATGTTAAA
* *
76377428 AAATTAAAAATTTTATA
1 AAATTAAAAATGTTAAA
76377445 AAATTAAA
1 AAATTAAA
76377453 TAAACTATCG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 10 0.45
17 12 0.55
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (17 bp):
AAATTAAAAATGTTAAA
Found at i:76378156 original size:15 final size:16
Alignment explanation
Indices: 76378136--76378166 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
76378126 ATTTAAGAAA
76378136 GAAAAA-TACTAAATT
1 GAAAAACTACTAAATT
76378151 GAAAAACTACTAAATT
1 GAAAAACTACTAAATT
76378167 AGCCAAAAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 6 0.40
16 9 0.60
ACGTcount: A:0.58, C:0.10, G:0.06, T:0.26
Consensus pattern (16 bp):
GAAAAACTACTAAATT
Found at i:76382459 original size:96 final size:95
Alignment explanation
Indices: 76382128--76382473 Score: 383
Period size: 96 Copynumber: 3.6 Consensus size: 95
76382118 TGTGCTAATC
* * * * *
76382128 TAAGACCATGTCTAGGACATGGCATCGGCCACAATATGAGAACCAGTGTGAGACCATGTTTGGAA
1 TAAGACCATGTCTAGGACATGGCATCGGCCACAATATGAGAGCCAATGTAAGACCATGTCTGGGA
* * * * * *
76382193 CATAGCATCAGCAATGTAATGAGACCCATTG
66 CATGGCATCGGCATTG-AATGAGAGCTAGTG
* * *
76382224 TAAGACCATGT-TTGGAACATGGCATCGG-CA-ATGTAATGAGAGCCAATGTAAGACCATGTCTC
1 TAAGACCATGTCTAGG-ACATGGCATCGGCCACA-AT-ATGAGAGCCAATGTAAGACCATGTCTG
* * *
76382286 GGACATGGCATCGACATTGATATGTGTGCTAGTG
63 GGACATGGCATCGGCATTGA-ATGAGAGCTAGTG
* * *
76382320 TAAGACCATGTCTAGGACATGGCATCAGCCACATTATGAGAGCCAGTGTAAGACCATGTCTGGGA
1 TAAGACCATGTCTAGGACATGGCATCGGCCACAATATGAGAGCCAATGTAAGACCATGTCTGGGA
*
76382385 CATGGCATCGGCATTGAGACGAGAGCTAGTG
66 CATGGCATCGGCATTGA-ATGAGAGCTAGTG
* * * * *
76382416 TAAGACGATGTCTAGGACATGGCATCGGCCTCAACATGTGAGCCAATGTAATACCATG
1 TAAGACCATGTCTAGGACATGGCATCGGCCACAATATGAGAGCCAATGTAAGACCATG
76382474 CTTAGAATAT
Statistics
Matches: 208, Mismatches: 35, Indels: 14
0.81 0.14 0.05
Matches are distributed among these distances:
94 1 0.00
95 7 0.03
96 193 0.93
97 6 0.03
98 1 0.00
ACGTcount: A:0.31, C:0.20, G:0.26, T:0.23
Consensus pattern (95 bp):
TAAGACCATGTCTAGGACATGGCATCGGCCACAATATGAGAGCCAATGTAAGACCATGTCTGGGA
CATGGCATCGGCATTGAATGAGAGCTAGTG
Found at i:76382466 original size:48 final size:48
Alignment explanation
Indices: 76382128--76382490 Score: 290
Period size: 48 Copynumber: 7.6 Consensus size: 48
76382118 TGTGCTAATC
*
76382128 TAAGACCATGTCTAGGACATGGCATCGGCCA-CAATATGAGAACCAGTG
1 TAAGACCATGTCTAGGACATGGCATCGG-CATCAATATGAGAGCCAGTG
* * * * ** * *
76382176 TGAGACCATGT-TTGGAACATAGCATCAGCAATGTA-ATGAGACCCATTG
1 TAAGACCATGTCTAGG-ACATGGCATCGGC-ATCAATATGAGAGCCAGTG
* ** *
76382224 TAAGACCATGT-TTGGAACATGGCATCGGCAATGTA-ATGAGAGCCAATG
1 TAAGACCATGTCTAGG-ACATGGCATCGGC-ATCAATATGAGAGCCAGTG
* * ** * * *
76382272 TAAGACCATGTCTCGGACATGGCATCGACATTGATATGTGTGCTAGTG
1 TAAGACCATGTCTAGGACATGGCATCGGCATCAATATGAGAGCCAGTG
* *
76382320 TAAGACCATGTCTAGGACATGGCATCAGCCA-CATTATGAGAGCCAGTG
1 TAAGACCATGTCTAGGACATGGCATC-GGCATCAATATGAGAGCCAGTG
* ** * * *
76382368 TAAGACCATGTCTGGGACATGGCATCGGCATTGAGACGAGAGCTAGTG
1 TAAGACCATGTCTAGGACATGGCATCGGCATCAATATGAGAGCCAGTG
* * * * *
76382416 TAAGACGATGTCTAGGACATGGCATCGGCCTCAACATGTGAGCCAATG
1 TAAGACCATGTCTAGGACATGGCATCGGCATCAATATGAGAGCCAGTG
* * *
76382464 TAATACCATG-CTTAGAATATGGCATCG
1 TAAGACCATGTC-TAGGACATGGCATCG
76382491 ACAATTCACC
Statistics
Matches: 256, Mismatches: 51, Indels: 16
0.79 0.16 0.05
Matches are distributed among these distances:
47 11 0.04
48 238 0.93
49 7 0.03
ACGTcount: A:0.31, C:0.20, G:0.26, T:0.23
Consensus pattern (48 bp):
TAAGACCATGTCTAGGACATGGCATCGGCATCAATATGAGAGCCAGTG
Found at i:76382486 original size:144 final size:143
Alignment explanation
Indices: 76382128--76382489 Score: 406
Period size: 144 Copynumber: 2.5 Consensus size: 143
76382118 TGTGCTAATC
* * * * *
76382128 TAAGACCATGTCTAGGACATGGCATCGGCCACAATATGAGAACCAGTGTGAGACCATGTTTGGAA
1 TAAGACCATGTCTAGGACATGGCATCGGCCTCAATATGTGAGCCAGTGTAAGACCATG-TTAGAA
* * *
76382193 CATAGCATCAGCAATGTAATGAGACCCATTGTAAGACCATGTTTGGAACATGGCATCGGCAATGT
65 CATGGCATCAGCAATGTAATGAGACCCAGTGTAAGACCATGTCTGGAACATGGCATCGGCAATGT
*
76382258 AATGAGAGCCAATG
130 AACGAGAGCCAATG
* * * ** * * *
76382272 TAAGACCATGTCTCGGACATGGCATCGACATTGATATGTGTGCTAGTGTAAGACCATGTCTAGGA
1 TAAGACCATGTCTAGGACATGGCATCGGCCTCAATATGTGAGCCAGTGTAAGACCATGT-TAGAA
* * *
76382337 CATGGCATCAGCCACAT-T-ATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATT
65 CATGGCATCAG-CA-ATGTAATGAGACCCAGTGTAAGACCATGTCTGGAACATGGCATCGGCAAT
* *
76382400 G-AGACGAGAGCTAGTG
128 GTA-ACGAGAGCCAATG
* * * *
76382416 TAAGACGATGTCTAGGACATGGCATCGGCCTCAACATGTGAGCCAATGTAATACCATGCTTAGAA
1 TAAGACCATGTCTAGGACATGGCATCGGCCTCAATATGTGAGCCAGTGTAAGACCATG-TTAGAA
*
76382481 TATGGCATC
65 CATGGCATC
76382490 GACAATTCAC
Statistics
Matches: 178, Mismatches: 35, Indels: 10
0.80 0.16 0.04
Matches are distributed among these distances:
143 2 0.01
144 170 0.96
145 4 0.02
146 2 0.01
ACGTcount: A:0.31, C:0.20, G:0.26, T:0.23
Consensus pattern (143 bp):
TAAGACCATGTCTAGGACATGGCATCGGCCTCAATATGTGAGCCAGTGTAAGACCATGTTAGAAC
ATGGCATCAGCAATGTAATGAGACCCAGTGTAAGACCATGTCTGGAACATGGCATCGGCAATGTA
ACGAGAGCCAATG
Found at i:76386386 original size:40 final size:40
Alignment explanation
Indices: 76386328--76386476 Score: 156
Period size: 40 Copynumber: 3.7 Consensus size: 40
76386318 TTGACGACAA
*
76386328 TTCGGCTATGTACGGCACTTAGTGTGCTATTCAAGATAGC
1 TTCGGCTATGTACGGCACTTAGTGTGCGATTCAAGATAGC
* * * *
76386368 TTTGGCTATGTAGGGCACTTAGTGTGCGCTTCGAGATAGC
1 TTCGGCTATGTACGGCACTTAGTGTGCGATTCAAGATAGC
* * * * *
76386408 TTCGGCTATGTATGCCACTTAGTGTGTGAGATTGAA-ATAGT
1 TTCGGCTATGTACGGCACTTA--GTGTGCGATTCAAGATAGC
* *
76386449 TTCAGCTATGTATTGGCACTTAGTGTGC
1 TTCGGCTATGTA-CGGCACTTAGTGTGC
76386477 AAGAATTTGA
Statistics
Matches: 90, Mismatches: 16, Indels: 6
0.80 0.14 0.05
Matches are distributed among these distances:
40 58 0.64
41 15 0.17
42 17 0.19
ACGTcount: A:0.21, C:0.17, G:0.28, T:0.35
Consensus pattern (40 bp):
TTCGGCTATGTACGGCACTTAGTGTGCGATTCAAGATAGC
Found at i:76387531 original size:12 final size:12
Alignment explanation
Indices: 76387514--76387540 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
76387504 ACAGGTTGGG
76387514 CACAGCCTAGCA
1 CACAGCCTAGCA
76387526 CACAGCCTAGCA
1 CACAGCCTAGCA
76387538 CAC
1 CAC
76387541 GGGCGTGTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.33, C:0.44, G:0.15, T:0.07
Consensus pattern (12 bp):
CACAGCCTAGCA
Found at i:76401747 original size:28 final size:28
Alignment explanation
Indices: 76401694--76401777 Score: 132
Period size: 28 Copynumber: 3.0 Consensus size: 28
76401684 CACTTTGTGC
76401694 TATTCTGGTGTGTTTTGGATGGATTATAT
1 TATTCTGGTGTGTTTTGGA-GGATTATAT
*
76401723 TATTCTGGTGTGTTTGGGAGGATTATAT
1 TATTCTGGTGTGTTTTGGAGGATTATAT
* *
76401751 GATACTGGTGTGTTTTGGAGGATTATA
1 TATTCTGGTGTGTTTTGGAGGATTATA
76401778 CTGGTGTGTT
Statistics
Matches: 51, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
28 33 0.65
29 18 0.35
ACGTcount: A:0.19, C:0.04, G:0.31, T:0.46
Consensus pattern (28 bp):
TATTCTGGTGTGTTTTGGAGGATTATAT
Found at i:76401789 original size:23 final size:24
Alignment explanation
Indices: 76401698--76401791 Score: 91
Period size: 28 Copynumber: 3.6 Consensus size: 24
76401688 TTGTGCTATT
76401698 CTGGTGTGTTTTGGATGGATTATATTA
1 CTGGTGTGTTTTGGA-GGA-TATA-TA
*
76401725 TTCTGGTGTGTTTGGGAGGATTATATGATA
1 --CTGGTGTGTTTTGGAGG---ATAT-ATA
76401755 CTGGTGTGTTTTGGAGGAT-TATA
1 CTGGTGTGTTTTGGAGGATATATA
76401778 CTGGTGTGTTTTGG
1 CTGGTGTGTTTTGG
76401792 TTGGACATTT
Statistics
Matches: 59, Mismatches: 2, Indels: 14
0.79 0.03 0.19
Matches are distributed among these distances:
23 17 0.29
24 1 0.02
25 2 0.03
28 18 0.31
29 14 0.24
30 5 0.08
31 2 0.03
ACGTcount: A:0.16, C:0.04, G:0.34, T:0.46
Consensus pattern (24 bp):
CTGGTGTGTTTTGGAGGATATATA
Found at i:76402032 original size:21 final size:22
Alignment explanation
Indices: 76401983--76402060 Score: 63
Period size: 21 Copynumber: 3.6 Consensus size: 22
76401973 CTTTACTGAT
* * *
76401983 CAGGCACTTTATGTGTCGTATTT
1 CAGGCACCTTATGTGTCGCA-TG
76402006 CAGGCACCTTATGTGTCGCA-G
1 CAGGCACCTTATGTGTCGCATG
** * *
76402027 CAGGCACCTCGTGTGTCG-TTT
1 CAGGCACCTTATGTGTCGCATG
76402048 CAGGCA-CTTATGT
1 CAGGCACCTTATGT
76402061 ATCATATTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 5
0.76 0.15 0.08
Matches are distributed among these distances:
20 5 0.11
21 22 0.49
23 18 0.40
ACGTcount: A:0.17, C:0.24, G:0.26, T:0.33
Consensus pattern (22 bp):
CAGGCACCTTATGTGTCGCATG
Found at i:76407616 original size:93 final size:95
Alignment explanation
Indices: 76407509--76407727 Score: 241
Period size: 98 Copynumber: 2.3 Consensus size: 95
76407499 TATACAAGCT
* * * *
76407509 AGTGTAAGATCTGTCTGGGACATGGCGTCAA-CTTG-T-TGTG-TGTTAGTATAAGACCTGTCTG
1 AGTGTAAGACCTGTCTGGGACATGGCGTCAACCTTGATATATGAAGTCAGTATAAGACCTGTCTG
*
76407570 GGACATGGCATCGACACCAATAGATGA-GAGCC
66 GGACACGGCATCGACACCAAT-G-T-ACGAGCC
* * *
76407602 AGTGTAAGACCTGTCTGGCACATGGCATCAACCTTGATATATGAAAGTCAGTATAAGACTTGTCT
1 AGTGTAAGACCTGTCTGGGACATGGCGTCAACCTTGATATATG-AAGTCAGTATAAGACCTGTCT
*** *
76407667 GGGACACGGCATCGACTTTAATGTACTAGCC
65 GGGACACGGCATCGACACCAATGTACGAGCC
*
76407698 AGTGTAAGACCATGTCTGGGACATAGCGTC
1 AGTGTAAGACC-TGTCTGGGACATGGCGTC
76407728 GGTATTATAT
Statistics
Matches: 104, Mismatches: 15, Indels: 10
0.81 0.12 0.08
Matches are distributed among these distances:
93 28 0.27
94 4 0.04
95 2 0.02
96 19 0.18
97 16 0.15
98 35 0.34
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.26
Consensus pattern (95 bp):
AGTGTAAGACCTGTCTGGGACATGGCGTCAACCTTGATATATGAAGTCAGTATAAGACCTGTCTG
GGACACGGCATCGACACCAATGTACGAGCC
Found at i:76407629 original size:49 final size:50
Alignment explanation
Indices: 76407553--76407682 Score: 158
Period size: 49 Copynumber: 2.6 Consensus size: 50
76407543 GTTGTGTGTT
*
76407553 AGTATAAGACCTGTCTGGGACATGGCATCGACACC-AATAGATGAGAGCC
1 AGTATAAGACCTGTCTGGGACATGGCATCGACACCTAATAGATGAAAGCC
* * * * *
76407602 AGTGTAAGACCTGTCTGGCACATGGCATC-A-ACCTTGATATATGAAAGTC
1 AGTATAAGACCTGTCTGGGACATGGCATCGACACC-TAATAGATGAAAGCC
* *
76407651 AGTATAAGACTTGTCTGGGACACGGCATCGAC
1 AGTATAAGACCTGTCTGGGACATGGCATCGAC
76407683 TTTAATGTAC
Statistics
Matches: 67, Mismatches: 10, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
47 3 0.04
48 1 0.01
49 62 0.93
50 1 0.01
ACGTcount: A:0.31, C:0.22, G:0.25, T:0.22
Consensus pattern (50 bp):
AGTATAAGACCTGTCTGGGACATGGCATCGACACCTAATAGATGAAAGCC
Found at i:76407717 original size:48 final size:48
Alignment explanation
Indices: 76407557--76407720 Score: 147
Period size: 49 Copynumber: 3.4 Consensus size: 48
76407547 TGTGTTAGTA
* * * *
76407557 TAAGACCTGTCTGGGACATGGCATCGACACC-AATAGATGAGAGCCAGTG
1 TAAGACCTGTCTGGGACACGGCATC-A-ACCTTATATATGAAAGCCAGTG
* * * *
76407606 TAAGACCTGTCTGGCACATGGCATCAACCTTGATATATGAAAGTCAGTA
1 TAAGACCTGTCTGGGACACGGCATCAACCTT-ATATATGAAAGCCAGTG
* * *
76407655 TAAGACTTGTCTGGGACACGGCATCGA-CTT-TA-ATGTACTAGCCAGTG
1 TAAGACCTGTCTGGGACACGGCATCAACCTTATATATG-A-AAGCCAGTG
76407702 TAAGACCATGTCTGGGACA
1 TAAGACC-TGTCTGGGACA
76407721 TAGCGTCGGT
Statistics
Matches: 96, Mismatches: 14, Indels: 11
0.79 0.12 0.09
Matches are distributed among these distances:
45 3 0.03
46 3 0.03
47 15 0.16
48 15 0.16
49 60 0.62
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.24
Consensus pattern (48 bp):
TAAGACCTGTCTGGGACACGGCATCAACCTTATATATGAAAGCCAGTG
Found at i:76416821 original size:46 final size:46
Alignment explanation
Indices: 76416768--76416950 Score: 276
Period size: 46 Copynumber: 4.0 Consensus size: 46
76416758 TATATATACA
* * **
76416768 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATTTCACATTAGCCATTCAGCTTTACCACATATC
* * *
76416814 CATCTCATACACATTTCGCATTAGCCATTCCGCTTTACCTCATATC
1 CATCTCATACACATTTCACATTAGCCATTCAGCTTTACCACATATC
* *
76416860 CATCTCATACACATTTCGCATTAGCCATTCAGCTTTACCTCATATC
1 CATCTCATACACATTTCACATTAGCCATTCAGCTTTACCACATATC
*
76416906 CATCTCATACACATTTCACATTAGTCATTCAGCTTTACCACATAT
1 CATCTCATACACATTTCACATTAGCCATTCAGCTTTACCACATAT
76416951 ATACACTTCC
Statistics
Matches: 127, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 127 1.00
ACGTcount: A:0.27, C:0.32, G:0.06, T:0.35
Consensus pattern (46 bp):
CATCTCATACACATTTCACATTAGCCATTCAGCTTTACCACATATC
Found at i:76416993 original size:22 final size:22
Alignment explanation
Indices: 76416967--76417042 Score: 59
Period size: 22 Copynumber: 3.3 Consensus size: 22
76416957 TTCCACGTTC
76416967 ATCACATTGGCCATTCTGCCTT
1 ATCACATTGGCCATTCTGCCTT
*
76416989 ATCACATATATG-CATGT-T-CACATT
1 ATCACAT-T-GGCCAT-TCTGC-C-TT
*
76417013 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCTGCCTT
76417036 ATCACAT
1 ATCACAT
76417043 ATATGCATGT
Statistics
Matches: 42, Mismatches: 3, Indels: 18
0.67 0.05 0.29
Matches are distributed among these distances:
22 15 0.36
23 10 0.24
24 9 0.21
25 8 0.19
ACGTcount: A:0.25, C:0.29, G:0.12, T:0.34
Consensus pattern (22 bp):
ATCACATTGGCCATTCTGCCTT
Found at i:76416995 original size:47 final size:47
Alignment explanation
Indices: 76416964--76417302 Score: 597
Period size: 47 Copynumber: 7.2 Consensus size: 47
76416954 CACTTCCACG
* *
76416964 TTCATCACATTGGCCATTCTGCCTTATCACATATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
*
76417011 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
*
76417058 TTCATCACATTGGCCATTCGGCCTTATCACACATATGTATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
76417105 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
76417152 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
76417199 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
* * * **
76417246 TTCATCACATTGGCCATTCGGCCTTATCTCATATATACACATTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
76417293 TTCATCACAT
1 TTCATCACAT
76417303 AAAATCCTAA
Statistics
Matches: 283, Mismatches: 9, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 283 1.00
ACGTcount: A:0.26, C:0.29, G:0.12, T:0.34
Consensus pattern (47 bp):
TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
Found at i:76417159 original size:25 final size:25
Alignment explanation
Indices: 76417130--76417254 Score: 76
Period size: 23 Copynumber: 5.2 Consensus size: 25
76417120 ATTCGGCCTT
76417130 ATCACACATATGCATGTTCACATTC
1 ATCACACATATGCATGTTCACATTC
* *
76417155 AT--CACAT-TGGCCA--TTCGGCCTT-
1 ATCACACATAT-G-CATGTTC-ACATTC
76417177 ATCACACATATGCATGTTCACATTC
1 ATCACACATATGCATGTTCACATTC
* *
76417202 AT--CACAT-TGGCCA--TTCGGCCTT-
1 ATCACACATAT-G-CATGTTC-ACATTC
76417224 ATCACACATATGCATGTTCACATTC
1 ATCACACATATGCATGTTCACATTC
76417249 ATCACA
1 ATCACA
76417255 TTGGCCATTC
Statistics
Matches: 74, Mismatches: 8, Indels: 36
0.63 0.07 0.31
Matches are distributed among these distances:
22 12 0.16
23 22 0.30
24 22 0.30
25 18 0.24
ACGTcount: A:0.28, C:0.30, G:0.11, T:0.31
Consensus pattern (25 bp):
ATCACACATATGCATGTTCACATTC
Found at i:76417229 original size:22 final size:22
Alignment explanation
Indices: 76417014--76417088 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
76417004 GTTCACATTC
76417014 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
76417036 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
76417060 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
76417083 ATCACA
1 ATCACA
76417089 CATATGTATG
Statistics
Matches: 40, Mismatches: 6, Indels: 14
0.67 0.10 0.23
Matches are distributed among these distances:
22 16 0.40
23 7 0.17
24 7 0.17
25 10 0.25
ACGTcount: A:0.25, C:0.29, G:0.13, T:0.32
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:76422707 original size:79 final size:79
Alignment explanation
Indices: 76422506--76422809 Score: 441
Period size: 79 Copynumber: 3.8 Consensus size: 79
76422496 TCGGATGATA
* * **
76422506 ACCGGGCTAAGTCCCG-AGAGCATTTGAGCTAGTGGCTA-ATTCCGGGCTAAGTCCCGAAGGCAT
1 ACCGGGCTAAGTCCCGAAG-GCATTTGTGCAAGTTACTATA-TCCGGGCTAAGTCCCGAAGGCAT
* * *
76422569 TCGTGCGAGCTACTAT
64 TTGTGCGAGTTATTAT
* * * * *
76422585 ATCCGGGCTAAGTCCAGAAGGCGTTTGTGCGAGCTATTATATCCGGGCTAAGTCCCGAAGGCATT
1 A-CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCATT
76422650 TGTGCGAGTTATTAT
65 TGTGCGAGTTATTAT
*
76422665 ACTGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTT
1 ACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTT
76422730 GTGCGAGTTATTAT
66 GTGCGAGTTATTAT
*
76422744 ACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTT
1 ACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTT
76422809 G
66 G
76422810 AGCTAGTGGC
Statistics
Matches: 203, Mismatches: 19, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
79 137 0.67
80 63 0.31
81 3 0.01
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (79 bp):
ACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTT
GTGCGAGTTATTAT
Found at i:76422724 original size:119 final size:119
Alignment explanation
Indices: 76422506--76422832 Score: 437
Period size: 119 Copynumber: 2.8 Consensus size: 119
76422496 TCGGATGATA
* * ** *
76422506 ACCGGGCTAAGTCCCG-AGAGCATTTGAGCTAGTGGCTA-ATTCCGGGCTAAGTCCCGAAGGCAT
1 ACCGGGCTAAGTCCCGAAG-GCATTTGTGCAAGTTACTATA-ACCGGGCTAAGTCCCGAAGGCAT
* * * *
76422569 TCGTGCGAGCTACTATATCCGGGCTAAGTCCAGAAGGCGTTTGTGCGAGCTATTAT
64 TTGTGCAAGTTACTATATCCGGGCTAAGTCCAGAAGGCATTTGTGCGAGCTATTAT
* * *
76422625 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTAT-ACTGGGCTAAGTCCCGAAGGCATT
1 A-CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAACCGGGCTAAGTCCCGAAGGCATT
* *
76422689 TGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTAT
65 TGTGCAAGTTACTATATCCGGGCTAAGTCCAGAAGGCATTTGTGCGAGCTATTAT
76422744 ACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTT
1 ACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTT
* * **
76422809 GAGCTAGTGGCTATATCC-GGCTAA
66 GTGCAAGTTACTATATCCGGGCTAA
76422833 ACTCCGAAGG
Statistics
Matches: 184, Mismatches: 20, Indels: 9
0.86 0.09 0.04
Matches are distributed among these distances:
118 42 0.23
119 111 0.60
120 29 0.16
121 2 0.01
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (119 bp):
ACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTT
GTGCAAGTTACTATATCCGGGCTAAGTCCAGAAGGCATTTGTGCGAGCTATTAT
Found at i:76422842 original size:39 final size:40
Alignment explanation
Indices: 76422507--76422832 Score: 401
Period size: 40 Copynumber: 8.2 Consensus size: 40
76422497 CGGATGATAA
* * **
76422507 CCGGGCTAAGTCCCG-AGAGCATTTGAGCTAGTGGCTA-ATT
1 CCGGGCTAAGTCCCGAAG-GCATTTGTGCAAGTTACTATA-T
* * *
76422547 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAT
* * * * *
76422587 CCGGGCTAAGTCCAGAAGGCGTTTGTGCGAGCTATTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAT
* *
76422627 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATA-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAT
*
76422666 CTGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAT
* *
76422706 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATA-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAT
*
76422745 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAT
* * **
76422785 CCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAT
76422825 CC-GGCTAA
1 CCGGGCTAA
76422833 ACTCCGAAGG
Statistics
Matches: 256, Mismatches: 26, Indels: 9
0.88 0.09 0.03
Matches are distributed among these distances:
39 79 0.31
40 174 0.68
41 3 0.01
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAT
Found at i:76426096 original size:85 final size:85
Alignment explanation
Indices: 76425984--76426177 Score: 329
Period size: 85 Copynumber: 2.3 Consensus size: 85
76425974 CCGTGTCCCT
* *
76425984 CACACGGCC-TAG-ACACGCCCGTGTTGTCGCCCGTGTTCAAAAACCTCGACATTCTATTTATGA
1 CACACGGCCAAAGCACACGCCCGTGTTGTCGCCCGTGTTCAAAAACCTCAACATTCTATTTATGA
76426047 CATCATCATTCATTTAGGGA
66 CATCATCATTCATTTAGGGA
* *
76426067 CACACGGCCAAAGCACACGCCCGTGTTGTCGCCCGTGTTCAAAAACCTCAACATTCTGTTTGTGA
1 CACACGGCCAAAGCACACGCCCGTGTTGTCGCCCGTGTTCAAAAACCTCAACATTCTATTTATGA
*
76426132 CATCATCGTTCATTTAGGGA
66 CATCATCATTCATTTAGGGA
76426152 CACACGGCCAAAGCACACGCCCGTGT
1 CACACGGCCAAAGCACACGCCCGTGT
76426178 GGCCTGCCCG
Statistics
Matches: 104, Mismatches: 5, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
83 9 0.09
84 2 0.02
85 93 0.89
ACGTcount: A:0.25, C:0.31, G:0.20, T:0.24
Consensus pattern (85 bp):
CACACGGCCAAAGCACACGCCCGTGTTGTCGCCCGTGTTCAAAAACCTCAACATTCTATTTATGA
CATCATCATTCATTTAGGGA
Found at i:76439164 original size:39 final size:39
Alignment explanation
Indices: 76439059--76439166 Score: 128
Period size: 39 Copynumber: 2.8 Consensus size: 39
76439049 TGATATTGGG
* * *
76439059 AATATATCCGGACATGAGGTCCGCAAGCTATATGCTAGG
1 AATATATCCGAACATGAGGTCCGCAGGCTATATGCTAGA
* *
76439098 AATA-AGCCCAGACATGAGGTCCGCAGGCTATATGCTAGA
1 AATATATCCGA-ACATGAGGTCCGCAGGCTATATGCTAGA
* * *
76439137 AATATATCCGAACTTGAAGTCCACAGGCTA
1 AATATATCCGAACATGAGGTCCGCAGGCTA
76439167 CGTGCTTGAA
Statistics
Matches: 57, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
38 3 0.05
39 50 0.88
40 4 0.07
ACGTcount: A:0.33, C:0.22, G:0.23, T:0.21
Consensus pattern (39 bp):
AATATATCCGAACATGAGGTCCGCAGGCTATATGCTAGA
Found at i:76439414 original size:2 final size:2
Alignment explanation
Indices: 76439409--76439448 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
76439399 TATATATATA
76439409 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
76439449 GATGAATTCG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50
Consensus pattern (2 bp):
TG
Found at i:76447145 original size:39 final size:39
Alignment explanation
Indices: 76447095--76447241 Score: 231
Period size: 39 Copynumber: 3.8 Consensus size: 39
76447085 TGATATTGGG
*
76447095 AATATATCCGGACATGAGGTCCGCAGGCTATATGCTGGG
1 AATATATCCGGACATGAGGTCCGCAGGCTATATGCTGGA
**
76447134 AATATGCCCGGACATGAGGTCCGCAGGCTATATGCTGGA
1 AATATATCCGGACATGAGGTCCGCAGGCTATATGCTGGA
* *
76447173 AATATATCCGGACATGAGGTCCACAGGCTATATGCTAGA
1 AATATATCCGGACATGAGGTCCGCAGGCTATATGCTGGA
* *
76447212 AATATATCCGGACTTGAAGTCCGCAGGCTA
1 AATATATCCGGACATGAGGTCCGCAGGCTA
76447242 CGTGCTAGAA
Statistics
Matches: 98, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 98 1.00
ACGTcount: A:0.29, C:0.22, G:0.27, T:0.22
Consensus pattern (39 bp):
AATATATCCGGACATGAGGTCCGCAGGCTATATGCTGGA
Found at i:76450120 original size:40 final size:40
Alignment explanation
Indices: 76450096--76450274 Score: 279
Period size: 40 Copynumber: 4.5 Consensus size: 40
76450086 AACTCGAATA
* *
76450096 CCTTCGGGACATAGCCCGGATATAGTAACTTGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
*
76450136 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
*
76450176 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
* * *
76450216 CCTTCGGGACTTAGCCTGGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTAGCACAAATG
76450256 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
76450275 TTATCATCCA
Statistics
Matches: 131, Mismatches: 7, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
39 1 0.01
40 130 0.99
ACGTcount: A:0.26, C:0.28, G:0.24, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
Found at i:76454421 original size:28 final size:28
Alignment explanation
Indices: 76454381--76454493 Score: 120
Period size: 28 Copynumber: 4.0 Consensus size: 28
76454371 CATGACTATA
*
76454381 AATGTGATTTGGGCCTAGT-GGCCATATG
1 AATGTGA-TTGGGCCTAATGGGCCATATG
* *
76454409 AATGTGATTTGGGGCCTAATGGGCCACATA
1 AATGTGA-TT-GGGCCTAATGGGCCATATG
*
76454439 AATGTGAATGGGCCTAATGGGCCATATG
1 AATGTGATTGGGCCTAATGGGCCATATG
* * * *
76454467 AAAGAGATTGGGCTTAGTGGGCCATAT
1 AATGTGATTGGGCCTAATGGGCCATAT
76454494 ATATAGGTAT
Statistics
Matches: 72, Mismatches: 11, Indels: 4
0.83 0.13 0.05
Matches are distributed among these distances:
28 49 0.68
29 9 0.12
30 14 0.19
ACGTcount: A:0.27, C:0.14, G:0.32, T:0.27
Consensus pattern (28 bp):
AATGTGATTGGGCCTAATGGGCCATATG
Found at i:76469143 original size:79 final size:80
Alignment explanation
Indices: 76469008--76469231 Score: 289
Period size: 79 Copynumber: 2.8 Consensus size: 80
76468998 TTGAATGATG
* * *
76469008 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATATCCGGACTAAGAT-CCGAAGGCA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAA-ATCCGGGCTAAG-TCCCGAAGGCA
*
76469069 TTTGTGCGAGATACTAAT
63 TTTGTGCGAGATACTAAA
*
76469087 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTT
*
76469151 GTGCGAGTTACTAAA
66 GTGCGAGATACTAAA
* * *
76469166 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAA-CCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AATCCGGGCTAAGTCCCGAAGGCATT
76469230 TG
65 TG
76469232 AACGAGGAGC
Statistics
Matches: 129, Mismatches: 10, Indels: 11
0.86 0.07 0.07
Matches are distributed among these distances:
78 10 0.08
79 61 0.47
80 56 0.43
81 2 0.02
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTT
GTGCGAGATACTAAA
Found at i:76469245 original size:40 final size:40
Alignment explanation
Indices: 76469008--76469231 Score: 289
Period size: 40 Copynumber: 5.7 Consensus size: 40
76468998 TTGAATGATG
* *
76469008 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAA-A
* * *
76469047 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
76469087 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
76469126 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
76469166 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
76469207 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
76469232 AACGAGGAGC
Statistics
Matches: 166, Mismatches: 12, Indels: 13
0.87 0.06 0.07
Matches are distributed among these distances:
39 53 0.32
40 103 0.62
41 10 0.06
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:76469249 original size:80 final size:80
Alignment explanation
Indices: 76469008--76469264 Score: 244
Period size: 79 Copynumber: 3.2 Consensus size: 80
76468998 TTGAATGATG
* * * *
76469008 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATATCCGGACTAAGAT-CCGAAGGCA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAA-TTACTAA-ATCCGGGCTAAG-TCCCGAAGGCA
** *
76469069 TTTGTGCGAGAT-ACTAAT
63 TTTGAACGAG-TGACTAAA
* * *
76469087 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTAAATCCGGGCTAAGTCCCGAAGGCATTT
** *
76469151 GTGCGAGTTACTAAA
66 GAACGAGTGACTAAA
*
76469166 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAA-CCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTA-AATCCGGGCTAAGTCCCGAAGGCATT
*
76469230 TGAACGAG-GAGCTATA
65 TGAACGAGTGA-CTAAA
* *
76469246 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
76469265 TACGTGATTT
Statistics
Matches: 154, Mismatches: 16, Indels: 16
0.83 0.09 0.09
Matches are distributed among these distances:
78 11 0.07
79 73 0.47
80 68 0.44
81 2 0.01
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTAAATCCGGGCTAAGTCCCGAAGGCATTT
GAACGAGTGACTAAA
Found at i:76476912 original size:39 final size:39
Alignment explanation
Indices: 76476830--76476976 Score: 144
Period size: 39 Copynumber: 3.8 Consensus size: 39
76476820 TTGAATGATG
*
76476830 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGA-T-ACTAA-A
* *
76476869 TCCGGACTAAGATCCGAA-GCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGATACTAAA
* *
76476908 TCCGGGCTAAGCCCGAAGGCA-TTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGATACTAAA
*
76476946 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGA
76476977 ATTAATAACC
Statistics
Matches: 91, Mismatches: 9, Indels: 15
0.79 0.08 0.13
Matches are distributed among these distances:
38 32 0.35
39 39 0.43
40 19 0.21
41 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGATACTAAA
Found at i:76476933 original size:38 final size:40
Alignment explanation
Indices: 76476830--76477009 Score: 159
Period size: 38 Copynumber: 4.7 Consensus size: 40
76476820 TTGAATGATG
*
76476830 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
76476868 ATCCGGACTAAGAT-CCGAA-GCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
* *
76476908 TCCGGGCTAAG-CCCGAAGGCA-TTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
76476946 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-AT--TAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
76476983 AACC-GGCATAGGTCCCGAAGGCATTTG
1 -TCCGGGC-TAAGTCCCGAAGGCATTTG
76477010 AACGAGGAGC
Statistics
Matches: 119, Mismatches: 11, Indels: 23
0.78 0.07 0.15
Matches are distributed among these distances:
37 5 0.04
38 52 0.44
39 41 0.34
40 20 0.17
41 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:76476969 original size:78 final size:78
Alignment explanation
Indices: 76476830--76476976 Score: 194
Period size: 78 Copynumber: 1.9 Consensus size: 78
76476820 TTGAATGATG
76476830 TCCGGGCTAAGTCCCGAAGGCTTGTGCTAAGTGACAATATCCGGACTAAGATCCGAAGCATTTGT
1 TCCGGGCTAAGTCCCGAAGGCTTGTGCTAAGTGACAATATCCGGACTAAGATCCGAAGCATTTGT
76476895 GCGAGATACTAAT
66 GCGAGATACTAAT
* * **
76476908 TCCGGGCTAAG-CCCGAAGGCATTGTGC-GAGTTACTAA-ATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGC-TTGTGCTAAGTGAC-AATATCCGGACTAAGAT-CCGAA-GCAT
76476969 TTGTGCGA
62 TTGTGCGA
76476977 ATTAATAACC
Statistics
Matches: 61, Mismatches: 4, Indels: 8
0.84 0.05 0.11
Matches are distributed among these distances:
76 1 0.02
77 29 0.48
78 31 0.51
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (78 bp):
TCCGGGCTAAGTCCCGAAGGCTTGTGCTAAGTGACAATATCCGGACTAAGATCCGAAGCATTTGT
GCGAGATACTAAT
Found at i:76486114 original size:17 final size:18
Alignment explanation
Indices: 76486077--76486114 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
76486067 GATTGAGAGT
* *
76486077 GAAAAGGAATGTGAAACA
1 GAAAAGAAATGTGAAAAA
76486095 GAAAAGAAAT-TGAAAAA
1 GAAAAGAAATGTGAAAAA
76486112 GAA
1 GAA
76486115 GTTGAAGAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 9 0.50
18 9 0.50
ACGTcount: A:0.63, C:0.03, G:0.24, T:0.11
Consensus pattern (18 bp):
GAAAAGAAATGTGAAAAA
Found at i:76486127 original size:13 final size:12
Alignment explanation
Indices: 76486096--76486150 Score: 51
Period size: 12 Copynumber: 4.6 Consensus size: 12
76486086 TGTGAAACAG
*
76486096 AAAAGAAATTGA
1 AAAAGAAGTTGA
76486108 AAAAGAAGTTGA
1 AAAAGAAGTTGA
*
76486120 AGAAAGAAG-AGA
1 A-AAAGAAGTTGA
*
76486132 AAATG-AGTTAGA
1 AAAAGAAGTT-GA
76486144 AAAAGAA
1 AAAAGAA
76486151 ACAAAAGAAA
Statistics
Matches: 34, Mismatches: 5, Indels: 7
0.74 0.11 0.15
Matches are distributed among these distances:
10 2 0.06
11 3 0.09
12 21 0.62
13 8 0.24
ACGTcount: A:0.64, C:0.00, G:0.24, T:0.13
Consensus pattern (12 bp):
AAAAGAAGTTGA
Found at i:76490151 original size:29 final size:23
Alignment explanation
Indices: 76490097--76490143 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
76490087 AGCATTCTTT
76490097 ATTAAACAAGGAAAAGGAAAGCC
1 ATTAAACAAGGAAAAGGAAAGCC
76490120 ATTAAACAAGGAAAAGGAAAGCC
1 ATTAAACAAGGAAAAGGAAAGCC
76490143 A
1 A
76490144 AATCCATTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.57, C:0.13, G:0.21, T:0.09
Consensus pattern (23 bp):
ATTAAACAAGGAAAAGGAAAGCC
Found at i:76490771 original size:15 final size:16
Alignment explanation
Indices: 76490751--76490783 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
76490741 TTAATCTGTA
76490751 TTATCTATT-ATATTT
1 TTATCTATTCATATTT
*
76490766 TTATCTTTTCATATTT
1 TTATCTATTCATATTT
76490782 TT
1 TT
76490784 TTATAGTCTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 8 0.50
16 8 0.50
ACGTcount: A:0.21, C:0.09, G:0.00, T:0.70
Consensus pattern (16 bp):
TTATCTATTCATATTT
Found at i:76492601 original size:25 final size:26
Alignment explanation
Indices: 76492567--76492615 Score: 73
Period size: 25 Copynumber: 1.9 Consensus size: 26
76492557 TTTATTGGAA
76492567 AAAAATTAAAAAAAATTCTAAAAAGG
1 AAAAATTAAAAAAAATTCTAAAAAGG
* *
76492593 AAAAA-TAAAGAAAATTTTAAAAA
1 AAAAATTAAAAAAAATTCTAAAAA
76492616 ATAAATTGAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 16 0.76
26 5 0.24
ACGTcount: A:0.71, C:0.02, G:0.06, T:0.20
Consensus pattern (26 bp):
AAAAATTAAAAAAAATTCTAAAAAGG
Found at i:76499934 original size:7 final size:7
Alignment explanation
Indices: 76499922--76499953 Score: 64
Period size: 7 Copynumber: 4.6 Consensus size: 7
76499912 TATTATTTTA
76499922 ATTTAAT
1 ATTTAAT
76499929 ATTTAAT
1 ATTTAAT
76499936 ATTTAAT
1 ATTTAAT
76499943 ATTTAAT
1 ATTTAAT
76499950 ATTT
1 ATTT
76499954 TTATAGTTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (7 bp):
ATTTAAT
Found at i:76500401 original size:9 final size:9
Alignment explanation
Indices: 76500387--76500417 Score: 62
Period size: 9 Copynumber: 3.4 Consensus size: 9
76500377 CATGGAGTAA
76500387 ACTAATTGG
1 ACTAATTGG
76500396 ACTAATTGG
1 ACTAATTGG
76500405 ACTAATTGG
1 ACTAATTGG
76500414 ACTA
1 ACTA
76500418 CACTTTAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.35, C:0.13, G:0.19, T:0.32
Consensus pattern (9 bp):
ACTAATTGG
Found at i:76502312 original size:17 final size:16
Alignment explanation
Indices: 76502290--76502331 Score: 54
Period size: 14 Copynumber: 2.8 Consensus size: 16
76502280 TATAATAGAA
76502290 AGTTATAAAAATTTTGT
1 AGTTATAAAAATTTT-T
76502307 AGTTAT-AAAATTTTT
1 AGTTATAAAAATTTTT
76502322 A-TTA-AAAAAT
1 AGTTATAAAAAT
76502332 AACAATACTA
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
14 8 0.33
15 2 0.08
16 8 0.33
17 6 0.25
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.45
Consensus pattern (16 bp):
AGTTATAAAAATTTTT
Found at i:76507422 original size:17 final size:16
Alignment explanation
Indices: 76507400--76507448 Score: 71
Period size: 17 Copynumber: 2.9 Consensus size: 16
76507390 TAGCTGTCAC
76507400 TGAATTCAATTAATTAT
1 TGAATT-AATTAATTAT
76507417 TGAATTAAATTAATTAT
1 TGAATT-AATTAATTAT
76507434 TGAATTAATTTAATT
1 TGAATTAA-TTAATT
76507449 TGATAGTTAA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
16 2 0.07
17 28 0.93
ACGTcount: A:0.43, C:0.02, G:0.06, T:0.49
Consensus pattern (16 bp):
TGAATTAATTAATTAT
Found at i:76508222 original size:32 final size:32
Alignment explanation
Indices: 76508159--76508242 Score: 116
Period size: 32 Copynumber: 2.6 Consensus size: 32
76508149 TTACATGGGT
*
76508159 TTATATACTTTATCAAGGTTCTTCAAACAAGGG
1 TTATATAC-TTATCAAGGTTCCTCAAACAAGGG
*
76508192 TTATATACTTAT-TAGAGTTCCTCAAACAAGGG
1 TTATATACTTATCAAG-GTTCCTCAAACAAGGG
*
76508224 TTATATACTTATCATGGTT
1 TTATATACTTATCAAGGTT
76508243 TACAAACACA
Statistics
Matches: 45, Mismatches: 4, Indels: 5
0.83 0.07 0.09
Matches are distributed among these distances:
31 2 0.04
32 34 0.76
33 9 0.20
ACGTcount: A:0.32, C:0.14, G:0.14, T:0.39
Consensus pattern (32 bp):
TTATATACTTATCAAGGTTCCTCAAACAAGGG
Found at i:76508468 original size:4 final size:4
Alignment explanation
Indices: 76508451--76508484 Score: 59
Period size: 4 Copynumber: 8.5 Consensus size: 4
76508441 AAATTAACAT
*
76508451 AATC AATC AGTC AATC AATC AATC AATC AATC AA
1 AATC AATC AATC AATC AATC AATC AATC AATC AA
76508485 GTAATAATCT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
4 28 1.00
ACGTcount: A:0.50, C:0.24, G:0.03, T:0.24
Consensus pattern (4 bp):
AATC
Done.