Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 232 of 349
Found at i:76510959 original size:43 final size:43
Alignment explanation
Indices: 76510911--76511075 Score: 165
Period size: 43 Copynumber: 3.8 Consensus size: 43
76510901 AGCTCATACA
* * * * *
76510911 ATGCCAAAGTCTCAGACGTGGTCTTACATGTAATCAGATATTG
1 ATGCCAATGTCCCAGACGTGGTCTTACACGAAATCAAATATTG
* *
76510954 ATGCCACTGTCCCAGACAG-GGTTTTACACGAAATCAAATA-TG
1 ATGCCAATGTCCCAGAC-GTGGTCTTACACGAAATCAAATATTG
* * *
76510996 ATGCCGATGTCCCAGACATGGTCTTACACGTAAATCTCAA-ATTG
1 ATGCCAATGTCCCAGACGTGGTCTTACACG-AAATC-AAATATTG
* * *
76511040 ATGCCAATGTCCCAAACGTGGTCCTACATGAAATCA
1 ATGCCAATGTCCCAGACGTGGTCTTACACGAAATCA
76511076 CACATCGGAA
Statistics
Matches: 99, Mismatches: 18, Indels: 11
0.77 0.14 0.09
Matches are distributed among these distances:
42 27 0.27
43 42 0.42
44 30 0.30
ACGTcount: A:0.32, C:0.24, G:0.19, T:0.26
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACGTGGTCTTACACGAAATCAAATATTG
Found at i:76511010 original size:42 final size:42
Alignment explanation
Indices: 76510930--76511053 Score: 137
Period size: 42 Copynumber: 2.9 Consensus size: 42
76510920 TCTCAGACGT
* *
76510930 GGTCTTACATGT-AATCAGATATTGATGCCACTGTCCCAGACAG
1 GGTCTTACACGTAAATCAAATA-TGATGCCA-TGTCCCAGACAG
* *
76510973 GGTTTTACACG-AAATCAAATATGATGCCGATGTCCCAGACAT
1 GGTCTTACACGTAAATCAAATATGATGCC-ATGTCCCAGACAG
76511015 GGTCTTACACGTAAATCTCAAAT-TGATGCCAATGTCCCA
1 GGTCTTACACGTAAA--TCAAATATGATGCC-ATGTCCCA
76511054 AACGTGGTCC
Statistics
Matches: 70, Mismatches: 6, Indels: 9
0.82 0.07 0.11
Matches are distributed among these distances:
42 28 0.40
43 21 0.30
44 15 0.21
45 6 0.09
ACGTcount: A:0.31, C:0.23, G:0.19, T:0.27
Consensus pattern (42 bp):
GGTCTTACACGTAAATCAAATATGATGCCATGTCCCAGACAG
Found at i:76514083 original size:40 final size:40
Alignment explanation
Indices: 76514028--76514168 Score: 205
Period size: 40 Copynumber: 3.5 Consensus size: 40
76514018 TATTCGGATG
76514028 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
**
76514068 ATATCCGGGCTAAGTCCCGAAGGCATTCATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * *
76514108 ATATTCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
*
76514148 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
76514169 ATACTTGGGT
Statistics
Matches: 90, Mismatches: 10, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
39 13 0.14
40 75 0.83
41 2 0.02
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:76521933 original size:42 final size:42
Alignment explanation
Indices: 76521856--76521987 Score: 174
Period size: 42 Copynumber: 3.1 Consensus size: 42
76521846 TCTTACATGT
* * * * *
76521856 AATCAAATATCAATGCCACTGCCCTAGACAGGGTCTTACACAA
1 AATCAAATA-CGATGCCAATGTCCTAAACAAGGTCTTACACAA
*
76521899 AATCAAATACGATGCCAATGTCCTAAACAAGGTCTTGCACAA
1 AATCAAATACGATGCCAATGTCCTAAACAAGGTCTTACACAA
* * *
76521941 AATCAAATACGATGCCAATGTCCCAAACATGGTCTTACACGA
1 AATCAAATACGATGCCAATGTCCTAAACAAGGTCTTACACAA
76521983 AATCA
1 AATCA
76521988 CACATCGGAA
Statistics
Matches: 79, Mismatches: 10, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
42 70 0.89
43 9 0.11
ACGTcount: A:0.39, C:0.26, G:0.14, T:0.21
Consensus pattern (42 bp):
AATCAAATACGATGCCAATGTCCTAAACAAGGTCTTACACAA
Found at i:76526410 original size:28 final size:27
Alignment explanation
Indices: 76526353--76526504 Score: 241
Period size: 27 Copynumber: 5.6 Consensus size: 27
76526343 TAAATTGTGC
*
76526353 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
76526380 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
76526408 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
76526435 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
* *
76526463 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
76526490 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
76526505 GACTTAATAT
Statistics
Matches: 119, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
27 66 0.55
28 53 0.45
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGACTATGT
Found at i:76526417 original size:55 final size:55
Alignment explanation
Indices: 76526353--76526504 Score: 259
Period size: 55 Copynumber: 2.8 Consensus size: 55
76526343 TAAATTGTGC
*
76526353 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
*
76526408 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
* * *
76526463 AGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCG
76526505 GACTTAATAT
Statistics
Matches: 92, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
55 92 1.00
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
Found at i:76534561 original size:28 final size:27
Alignment explanation
Indices: 76534504--76534655 Score: 241
Period size: 27 Copynumber: 5.6 Consensus size: 27
76534494 TAAATTGTGC
*
76534504 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
76534531 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
76534559 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
76534586 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
* *
76534614 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
76534641 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
76534656 GACTTAACAT
Statistics
Matches: 119, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
27 66 0.55
28 53 0.45
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGACTATGT
Found at i:76534568 original size:55 final size:55
Alignment explanation
Indices: 76534504--76534655 Score: 259
Period size: 55 Copynumber: 2.8 Consensus size: 55
76534494 TAAATTGTGC
*
76534504 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
*
76534559 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
* * *
76534614 AGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCG
76534656 GACTTAACAT
Statistics
Matches: 92, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
55 92 1.00
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
Found at i:76536376 original size:43 final size:43
Alignment explanation
Indices: 76536323--76536423 Score: 141
Period size: 43 Copynumber: 2.4 Consensus size: 43
76536313 GGTTTCTTCG
* * *
76536323 ACAACGTACATGGCAGCTTGTTTGTAAATTTTGTGGTTTATCC
1 ACAACCTACATGGCAGCTTGTCTGCAAATTTTGTGGTTTATCC
* * *
76536366 ACAACTTACATGGTAGTTTGTCTGCAAATTTTGTGGTTTATCC
1 ACAACCTACATGGCAGCTTGTCTGCAAATTTTGTGGTTTATCC
76536409 AC-ACCTACATGGCAG
1 ACAACCTACATGGCAG
76536424 TTTATCTGAA
Statistics
Matches: 51, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
42 11 0.22
43 40 0.78
ACGTcount: A:0.25, C:0.19, G:0.20, T:0.37
Consensus pattern (43 bp):
ACAACCTACATGGCAGCTTGTCTGCAAATTTTGTGGTTTATCC
Found at i:76539043 original size:94 final size:94
Alignment explanation
Indices: 76538882--76539191 Score: 299
Period size: 94 Copynumber: 3.3 Consensus size: 94
76538872 AGAGCCAGTA
* * * * * *
76538882 TAAGACCATGTCTGGGACATGGCATCGGTATTGAGATGAGGGCTAGTGTAAGATGTGTCTAGGAC
1 TAAGACCATGTCTGGGACATGGCATCGGCATAGAGATAAGTGCTAGTGTAAGACGTGTCTGGGAC
*
76538947 ATGTATCAGCCGCATCATGATAGCTCGTG
66 ATGCATCAGCCGCATCATGATAGCTCGTG
* * * * *
76538976 TAAGACCACGTTTGGGACATGGCATCGGCATAGAGGTAAGTGCCTA-TATAAGAGGTGTCTGGGA
1 TAAGACCATGTCTGGGACATGGCATCGGCATAGAGATAAGTG-CTAGTGTAAGACGTGTCTGGGA
* * * *
76539040 CATGCATCGGCCTCAATGATGTTAGC-CAGTG
65 CATGCATCAGCCGC-ATCATGATAGCTC-GTG
* * ** *
76539071 TAA-AACATGTCTGGGACAT-GCATCGG-ATA-AGTTTCGTGCTAGTGTAAGACATGTCTGGGAC
1 TAAGACCATGTCTGGGACATGGCATCGGCATAGAGATAAGTGCTAGTGTAAGACGTGTCTGGGAC
* * * * *
76539132 ATGCATCAGCACGTATACACGAGAGTTGGTG
66 ATGCATCAGC-CGCAT-CATGATAGCTCGTG
76539163 TAAGACCATGTCTGGGACATGGCATCGGC
1 TAAGACCATGTCTGGGACATGGCATCGGC
76539192 CTCGATGAAG
Statistics
Matches: 172, Mismatches: 34, Indels: 19
0.76 0.15 0.08
Matches are distributed among these distances:
90 3 0.02
91 33 0.19
92 14 0.08
93 22 0.13
94 82 0.48
95 18 0.10
ACGTcount: A:0.26, C:0.18, G:0.30, T:0.25
Consensus pattern (94 bp):
TAAGACCATGTCTGGGACATGGCATCGGCATAGAGATAAGTGCTAGTGTAAGACGTGTCTGGGAC
ATGCATCAGCCGCATCATGATAGCTCGTG
Found at i:76540085 original size:55 final size:56
Alignment explanation
Indices: 76539970--76540088 Score: 138
Period size: 55 Copynumber: 2.2 Consensus size: 56
76539960 CTTAAACTTT
* * * *
76539970 TAAA-TCAGTATTGCCCATGGTTAGGCCACACGGGCGTGTGCCATAGCGATGTCTC
1 TAAAGTCAGTATTGCCCACGGGTAGGCCACACGGGCGTATGCCATAGCGATGTCCC
* * *
76540025 T-AAGTCAGTATTGCCCACGGGTAGGCCACATGGGCGTATGTCATCGCCG-TG-CCC
1 TAAAGTCAGTATTGCCCACGGGTAGGCCACACGGGCGTATGCCATAG-CGATGTCCC
76540079 TAAAGTCAGT
1 TAAAGTCAGT
76540089 GTCACACACG
Statistics
Matches: 54, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
54 5 0.09
55 47 0.87
56 2 0.04
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.24
Consensus pattern (56 bp):
TAAAGTCAGTATTGCCCACGGGTAGGCCACACGGGCGTATGCCATAGCGATGTCCC
Found at i:76541854 original size:48 final size:48
Alignment explanation
Indices: 76541704--76541862 Score: 147
Period size: 48 Copynumber: 3.3 Consensus size: 48
76541694 GGTAAATTGA
* * * * * *
76541704 CGATGCCATATCCCAGACATGGTATTACACTGGCTCACATATCGAGGC
1 CGATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATATCAACGC
*** * * * * * * **
76541752 CGATGCCATGTTTTATACATGTTCTTATACTAGCTCTCGTCTCAGTGC
1 CGATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATATCAACGC
* *
76541800 CAATGCCATGTCCCAAACATGGTCTTACACTAGCGCACATATCAACGC
1 CGATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATATCAACGC
76541848 CGATGCCATGTCCCA
1 CGATGCCATGTCCCA
76541863 GTGGTCTTAC
Statistics
Matches: 82, Mismatches: 29, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
48 82 1.00
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.27
Consensus pattern (48 bp):
CGATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATATCAACGC
Found at i:76543575 original size:47 final size:47
Alignment explanation
Indices: 76543488--76544081 Score: 936
Period size: 47 Copynumber: 12.6 Consensus size: 47
76543478 CCCTTCGGGA
** * * * * * *
76543488 CTTATCACATTTATGCACTTTCACATCCATTACATTGGCCACTCGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
76543535 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
76543582 CTTATCACGCATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
76543629 CTTATCACGCATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
76543676 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCAC--ACATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
76543725 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
76543772 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
76543819 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
76543866 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
76543913 CTTATCACGCATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
76543960 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
76544007 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
76544054 CTTATCACATATATATACACTTTCACAT
1 CTTATCAC--ACATATACACTTTCACAT
76544082 ATGGGTTTAA
Statistics
Matches: 517, Mismatches: 26, Indels: 6
0.94 0.05 0.01
Matches are distributed among these distances:
47 455 0.88
49 62 0.12
ACGTcount: A:0.30, C:0.31, G:0.08, T:0.31
Consensus pattern (47 bp):
CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:76547556 original size:40 final size:40
Alignment explanation
Indices: 76547512--76547627 Score: 133
Period size: 40 Copynumber: 2.9 Consensus size: 40
76547502 GAATACATGT
* * *
76547512 CACCAGCATGATTGCTCTTCGGGACCTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGAACCTAGCCCGGATATAA
* * ***
76547552 CACCAGCACGAATGCTCTTCGGAACTTAGTCCGGATACCT
1 CACCAGCACGAATGCTCTTCGGAACCTAGCCCGGATATAA
* **
76547592 CACTAGCACGAATGCTCTTCGGAATTTAGCCCGGAT
1 CACCAGCACGAATGCTCTTCGGAACCTAGCCCGGAT
76547628 TTAGTAACTC
Statistics
Matches: 65, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 65 1.00
ACGTcount: A:0.25, C:0.30, G:0.22, T:0.23
Consensus pattern (40 bp):
CACCAGCACGAATGCTCTTCGGAACCTAGCCCGGATATAA
Found at i:76547652 original size:40 final size:40
Alignment explanation
Indices: 76547528--76547789 Score: 207
Period size: 40 Copynumber: 6.5 Consensus size: 40
76547518 CATGATTGCT
* * * *
76547528 CTTCGGGACCTAGCCCGGATATAAC-AC-CAGCACGAATGC
1 CTTCGGGTCTTAGCCCGGATATATCAACTC-GCACCAATGC
** * ** * *
76547567 TCTTCGGAACTTAGTCCGGATACCTC-ACTAGCACGAATGC
1 -CTTCGGGTCTTAGCCCGGATATATCAACTCGCACCAATGC
* *
76547607 TCTTCGGAAT-TTAGCCCGGATTTAGT-AACTCGCACCAATGC
1 -CTTCGG-GTCTTAGCCCGGATATA-TCAACTCGCACCAATGC
* *
76547648 CTTCGGGTCTTAGCCCGAATATATCAACTTGCA-CAATTGC
1 CTTCGGGTCTTAGCCCGGATATATCAACTCGCACCAA-TGC
* * *
76547688 CTTCGGGTCTTAGCCCAGATATATCAATTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATATCAACTCGCACCAATGC
* *
76547728 CTTCGGGTCTTAGCCCGGATATAATC-ACTAGC-TCAATTGC
1 CTTCGGGTCTTAGCCCGGATAT-ATCAACTCGCACCAA-TGC
*
76547768 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGTCTTAGCCCGGATAT
76547790 CATTCAAATG
Statistics
Matches: 183, Mismatches: 29, Indels: 20
0.79 0.12 0.09
Matches are distributed among these distances:
39 7 0.04
40 157 0.86
41 19 0.10
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.26
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATATCAACTCGCACCAATGC
Found at i:76547660 original size:80 final size:78
Alignment explanation
Indices: 76547538--76547789 Score: 233
Period size: 80 Copynumber: 3.2 Consensus size: 78
76547528 CTTCGGGACC
* * ** * **
76547538 TAGCCCGGATATAAC-AC-CAGCACGAATGCTCTTCGGAACTTAGTCCGGATACCTCACTAGCAC
1 TAGCCCGGATATATCAACTC-GCACAAATGC-CTTCGGGTCTTAGCCCGGATAAATCACTAGCAC
76547601 GAA-TGCTCTTCGGAATT
64 -AATTGC-CTTCGG-ATT
* * * * *
76547618 TAGCCCGGATTTAGT-AACTCGCACCAATGCCTTCGGGTCTTAGCCCGAATATATCAACTTGCAC
1 TAGCCCGGATATA-TCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATAAATC-ACTAGCAC
*
76547682 AATTGCCTTCGGGTCT
64 AATTGCCTTCGGAT-T
* * *
76547698 TAGCCCAGATATATCAATTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAATCACTAGCTCA
1 TAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATA-AATCACTAGCACA
*
76547763 ATTGCCTTCGGGACT
65 ATTGCCTTC-GGATT
76547778 TAGCCCGGATAT
1 TAGCCCGGATAT
76547790 CATTCAAATG
Statistics
Matches: 141, Mismatches: 22, Indels: 18
0.78 0.12 0.10
Matches are distributed among these distances:
79 2 0.01
80 112 0.79
81 26 0.18
82 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.27
Consensus pattern (78 bp):
TAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATAAATCACTAGCACAA
TTGCCTTCGGATT
Found at i:76548118 original size:29 final size:29
Alignment explanation
Indices: 76548079--76548157 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
76548069 CTTAATAATC
*
76548079 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
76548109 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
76548138 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
76548158 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:76548200 original size:43 final size:43
Alignment explanation
Indices: 76548139--76548370 Score: 446
Period size: 43 Copynumber: 5.4 Consensus size: 43
76548129 TGCATTTCAA
76548139 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
76548182 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
*
76548225 GCTCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
76548268 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
*
76548311 GCTCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
76548354 GCCCGCACACTTAGTGC
1 GCCCGCACACTTAGTGC
76548371 TGAAAACCAA
Statistics
Matches: 185, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 185 1.00
ACGTcount: A:0.27, C:0.34, G:0.15, T:0.24
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
Found at i:76550283 original size:37 final size:37
Alignment explanation
Indices: 76550223--76550298 Score: 116
Period size: 37 Copynumber: 2.1 Consensus size: 37
76550213 TATTACGAAA
* * *
76550223 TCTTACCCGGACATAATCTCCACACGAAGTTATCGGG
1 TCTTACCCGGACAAAATCCCCACACGAAGTCATCGGG
*
76550260 TCTTACCCGGACAAAATCCCCACACGTAGTCATCGGG
1 TCTTACCCGGACAAAATCCCCACACGAAGTCATCGGG
76550297 TC
1 TC
76550299 CTTAGAACTC
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.26, C:0.33, G:0.18, T:0.22
Consensus pattern (37 bp):
TCTTACCCGGACAAAATCCCCACACGAAGTCATCGGG
Found at i:76550497 original size:47 final size:47
Alignment explanation
Indices: 76550419--76551012 Score: 900
Period size: 47 Copynumber: 12.6 Consensus size: 47
76550409 CCCTTCGGGA
* * * * * *
76550419 CTTATCACATTTATGCACTTTCACATCCATCACATTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * ** *
76550466 CCTGTCACATATATACACTTTCACATTCATCACATCAACCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
** *
76550513 CTTATCACGCATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
** *
76550560 CTTATCACGCATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
76550607 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
76550656 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
76550703 CTTATCACACATATACACTTTCACATTCATCACATCGACCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
76550750 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
** *
76550797 CTTATCACGCATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
76550844 CTTATCACATATATACACTTTCACATTCATCACATCGGCCGTTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
76550891 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
** *
76550938 CTTATCACGCATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
76550985 CTTATCACATATATATACACTTTCACAT
1 CTTATCAC--ATATATACACTTTCACAT
76551013 ATGGGTTTAA
Statistics
Matches: 504, Mismatches: 39, Indels: 6
0.92 0.07 0.01
Matches are distributed among these distances:
47 445 0.88
49 59 0.12
ACGTcount: A:0.30, C:0.31, G:0.08, T:0.31
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:76550498 original size:25 final size:25
Alignment explanation
Indices: 76550470--76550547 Score: 65
Period size: 25 Copynumber: 3.2 Consensus size: 25
76550460 CTCGGCCCTG
76550470 TCACATATATACACTTTCACATTCA
1 TCACATATATACACTTTCACATTCA
* * * *
76550495 TCACAT-CA-AC-CATTAAGCCTT-A
1 TCACATATATACACTTTCA-CATTCA
**
76550517 TCACGCATATACACTTTCACATTCA
1 TCACATATATACACTTTCACATTCA
76550542 TCACAT
1 TCACAT
76550548 CGGCCATTAA
Statistics
Matches: 36, Mismatches: 12, Indels: 10
0.62 0.21 0.17
Matches are distributed among these distances:
22 9 0.25
23 6 0.17
24 6 0.17
25 15 0.42
ACGTcount: A:0.35, C:0.31, G:0.03, T:0.32
Consensus pattern (25 bp):
TCACATATATACACTTTCACATTCA
Found at i:76554186 original size:22 final size:22
Alignment explanation
Indices: 76554161--76554205 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
76554151 GTGGAGAAGA
76554161 TCAATGATAAAAGACGAAGTCC
1 TCAATGATAAAAGACGAAGTCC
*
76554183 TCAATGATAAAAGATGAAGTCC
1 TCAATGATAAAAGACGAAGTCC
76554205 T
1 T
76554206 TTTTGTTTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.44, C:0.16, G:0.18, T:0.22
Consensus pattern (22 bp):
TCAATGATAAAAGACGAAGTCC
Found at i:76560927 original size:48 final size:46
Alignment explanation
Indices: 76560858--76561127 Score: 254
Period size: 48 Copynumber: 5.7 Consensus size: 46
76560848 GGTAAATTGT
* *
76560858 CGATGCCATGTCCAAGACATGGTCTTACACTGGCTCACATATCGAGG
1 CGATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCATAT-GAGG
** * * * * * *
76560905 TCGATGCCATGTTTTATACATGGTCTTATACTAGCTCTCGTCTTAGTG
1 -CGATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCATATGAG-G
* *
76560953 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGG
1 -CGATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCAT-ATGAGG
* * * *
76561001 CTGATGCCATGTCCTAGACATGGTCTTACACTAG-TGCACATATCAACG
1 C-GATGCCATGTCCTAGACATGGTCTTACACTGGCT-CTCATAT-GAGG
* * *
76561049 CGATGCCATGTCCTAGACATGGTTTTACATTGGCTCTCATAATGTGG
1 CGATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCAT-ATGAGG
* *
76561096 CCGATGCCATGTCCCAGTCATGGTCTTACACT
1 -CGATGCCATGTCCTAGACATGGTCTTACACT
76561128 AGTGCACATA
Statistics
Matches: 176, Mismatches: 38, Indels: 16
0.77 0.17 0.07
Matches are distributed among these distances:
47 40 0.23
48 134 0.76
49 2 0.01
ACGTcount: A:0.22, C:0.26, G:0.21, T:0.30
Consensus pattern (46 bp):
CGATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCATATGAGG
Found at i:76561085 original size:95 final size:96
Alignment explanation
Indices: 76560858--76561140 Score: 340
Period size: 95 Copynumber: 3.0 Consensus size: 96
76560848 GGTAAATTGT
* * **
76560858 CGATGCCATGTCCAAGACATGGTCTTACACTGGCTCACAT-ATCGAGG-TCGATGCCATGTTTTA
1 CGATGCCATGTCCAAGACATGGTCTTACACTGGCTCTCATAAT-GTGGCT-GATGCCATGTCCTA
* * * * * * **
76560921 TACATGGTCTTATACTAGCT-CTCGTCTTAGTGC
64 GACATGGTCTTACACTAG-TGCACATATCAACGC
*
76560954 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCTGATGCCATGTCCTAGA
1 CGATGCCATGTCCAAGACATGGTCTTACACTGGCTCTCATAATGTGGCTGATGCCATGTCCTAGA
76561019 CATGGTCTTACACTAGTGCACATATCAACG-
66 CATGGTCTTACACTAGTGCACATATCAACGC
* * * * * *
76561049 CGATGCCATGTCCTAGACATGGTTTTACATTGGCTCTCATAATGTGGCCGATGCCATGTCCCAGT
1 CGATGCCATGTCCAAGACATGGTCTTACACTGGCTCTCATAATGTGGCTGATGCCATGTCCTAGA
76561114 CATGGTCTTACACTAGTGCACATATCA
66 CATGGTCTTACACTAGTGCACATATCA
76561141 CCCAAATGTC
Statistics
Matches: 165, Mismatches: 19, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
95 87 0.53
96 75 0.45
97 3 0.02
ACGTcount: A:0.23, C:0.26, G:0.21, T:0.30
Consensus pattern (96 bp):
CGATGCCATGTCCAAGACATGGTCTTACACTGGCTCTCATAATGTGGCTGATGCCATGTCCTAGA
CATGGTCTTACACTAGTGCACATATCAACGC
Found at i:76566175 original size:29 final size:29
Alignment explanation
Indices: 76566142--76566215 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
76566132 GTTGTGAGAT
* *
76566142 TGGCACTAGGTGTGCGAACTTGAAA-TGCA
1 TGGCACTAAGTGTGCG-ACTTGAAAGTACA
* *
76566171 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGACTTGAAAGTACA
76566200 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
76566216 CGGTTGATTA
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
28 6 0.15
29 34 0.85
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGACTTGAAAGTACA
Found at i:76568903 original size:28 final size:29
Alignment explanation
Indices: 76568871--76568969 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 29
76568861 ATAATAAGCC
*
76568871 CGCACACTTAGTGCTTA-ATAGTCGAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* *
76568899 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* * *
76568927 CGCACACTTAGTGCTATACA-ATTTGAACC
1 CGCACACTTAGTGCT-TACATAATCGAACT
76568956 CGCACACTTAGTGC
1 CGCACACTTAGTGC
76568970 CAATCTCATG
Statistics
Matches: 61, Mismatches: 7, Indels: 5
0.84 0.10 0.07
Matches are distributed among these distances:
27 2 0.03
28 37 0.61
29 19 0.31
30 3 0.05
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCTTACATAATCGAACT
Found at i:76576905 original size:28 final size:29
Alignment explanation
Indices: 76576873--76576971 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 29
76576863 ATAATAAGCC
*
76576873 CGCACACTTAGTGCTTA-ATAGTCGAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* *
76576901 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* * *
76576929 CGCACACTTAGTGCTATACA-ATTTGAACC
1 CGCACACTTAGTGCT-TACATAATCGAACT
76576958 CGCACACTTAGTGC
1 CGCACACTTAGTGC
76576972 CAATCTCATG
Statistics
Matches: 61, Mismatches: 7, Indels: 5
0.84 0.10 0.07
Matches are distributed among these distances:
27 2 0.03
28 37 0.61
29 19 0.31
30 3 0.05
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCTTACATAATCGAACT
Found at i:76579517 original size:20 final size:20
Alignment explanation
Indices: 76579492--76579531 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
76579482 ACACCATTCG
76579492 GGTGTTTGATGAACTGTCAT
1 GGTGTTTGATGAACTGTCAT
76579512 GGTGTTTGATGAACTGTCAT
1 GGTGTTTGATGAACTGTCAT
76579532 CCGATGAATG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.20, C:0.10, G:0.30, T:0.40
Consensus pattern (20 bp):
GGTGTTTGATGAACTGTCAT
Found at i:76585517 original size:29 final size:29
Alignment explanation
Indices: 76585484--76585557 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
76585474 GTTGTGAGAT
* *
76585484 TGGCACTAGGTGTGCGAACTTGAAA-TGCA
1 TGGCACTAAGTGTGCG-ACTTGAAAGTACA
* *
76585513 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGACTTGAAAGTACA
76585542 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
76585558 CGGTTGATTA
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
28 6 0.15
29 34 0.85
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGACTTGAAAGTACA
Found at i:76588235 original size:40 final size:40
Alignment explanation
Indices: 76588177--76588357 Score: 258
Period size: 40 Copynumber: 4.5 Consensus size: 40
76588167 TATTCGGATG
* * *
76588177 ATATCCGGGCTAACTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
76588217 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* **
76588257 ATATCCGGGCTAAGTCCCAAAGGCATTCATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
76588297 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
*
76588337 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
76588358 ATACTTGGGT
Statistics
Matches: 127, Mismatches: 13, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
39 13 0.10
40 112 0.88
41 2 0.02
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:76595248 original size:19 final size:18
Alignment explanation
Indices: 76595226--76595262 Score: 56
Period size: 19 Copynumber: 2.0 Consensus size: 18
76595216 AGAATTGGCC
76595226 AAATGGGCCGGAATGGGCT
1 AAATGGGCCGG-ATGGGCT
*
76595245 AAATGGGCCTGATGGGCT
1 AAATGGGCCGGATGGGCT
76595263 GTTGGGCCCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 7 0.41
19 10 0.59
ACGTcount: A:0.24, C:0.16, G:0.41, T:0.19
Consensus pattern (18 bp):
AAATGGGCCGGATGGGCT
Found at i:76595387 original size:29 final size:27
Alignment explanation
Indices: 76595338--76595449 Score: 80
Period size: 29 Copynumber: 4.0 Consensus size: 27
76595328 TGAGTATAAT
* *
76595338 ATGATTTGGGCCTAATAGGCCATATGA
1 ATGAATTGGGCCTAATGGGCCATATGA
* *
76595365 AGGTGAATTGGGCCTAGTGGGCCATAAGAA
1 A--TGAATTGGGCCTAATGGGCCATATG-A
* * * *
76595395 TATGAACTGAGCCAAATGGGCCATTTGA
1 -ATGAATTGGGCCTAATGGGCCATATGA
* * *
76595423 ATAAGATTGGGCCTAGTGGGCTATATG
1 ATGA-ATTGGGCCTAATGGGCCATATG
76595450 CATGTATGTA
Statistics
Matches: 63, Mismatches: 17, Indels: 9
0.71 0.19 0.10
Matches are distributed among these distances:
27 4 0.06
28 17 0.27
29 40 0.63
30 1 0.02
31 1 0.02
ACGTcount: A:0.29, C:0.14, G:0.30, T:0.26
Consensus pattern (27 bp):
ATGAATTGGGCCTAATGGGCCATATGA
Found at i:76598092 original size:21 final size:20
Alignment explanation
Indices: 76598066--76598111 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
76598056 AGGGACTAAA
*
76598066 ATGAAAAACGTGTAAAATTTG
1 ATGAAAAA-GTCTAAAATTTG
* *
76598087 ATGAAAAATTCTAAAATTTT
1 ATGAAAAAGTCTAAAATTTG
76598107 ATGAA
1 ATGAA
76598112 TACATGTGTT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
20 14 0.64
21 8 0.36
ACGTcount: A:0.50, C:0.04, G:0.13, T:0.33
Consensus pattern (20 bp):
ATGAAAAAGTCTAAAATTTG
Found at i:76599687 original size:13 final size:13
Alignment explanation
Indices: 76599669--76599695 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
76599659 TATACAACAA
76599669 GGCCAGGCCACAC
1 GGCCAGGCCACAC
76599682 GGCCAGGCCACAC
1 GGCCAGGCCACAC
76599695 G
1 G
76599696 CCCGTGTACT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.44, G:0.33, T:0.00
Consensus pattern (13 bp):
GGCCAGGCCACAC
Found at i:76603872 original size:47 final size:48
Alignment explanation
Indices: 76603799--76603958 Score: 150
Period size: 48 Copynumber: 3.3 Consensus size: 48
76603789 TTATTTGTGT
76603799 GCCAGTGTAAGA-CATGTT-TGGGACAT-GCATCGACCACAT-TATGA-GA
1 GCCAGTGTAAGACCAT-TTCTGGGACATGGCATCG-CCACATATA-GAGGA
* * *
76603845 GCCGGTGTAAGACCATTTCTGGGACATGGCATCGGCACATATAGAGGT
1 GCCAGTGTAAGACCATTTCTGGGACATGGCATCGCCACATATAGAGGA
* * * * * *
76603893 GTCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATAGATATGTGAGA
1 GCCAGTGTAAGACCATTTCTGGGACATGGCATCGCCACATATA-GAG-GA
*
76603943 GCTAGTGTAAGACCAT
1 GCCAGTGTAAGACCAT
76603959 GTATTGGAGC
Statistics
Matches: 95, Mismatches: 12, Indels: 10
0.81 0.10 0.09
Matches are distributed among these distances:
46 13 0.14
47 18 0.19
48 47 0.49
49 2 0.02
50 15 0.16
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (48 bp):
GCCAGTGTAAGACCATTTCTGGGACATGGCATCGCCACATATAGAGGA
Found at i:76616442 original size:14 final size:13
Alignment explanation
Indices: 76616422--76616453 Score: 55
Period size: 14 Copynumber: 2.4 Consensus size: 13
76616412 AATATTTAAC
76616422 TTGTTCTTAATTA
1 TTGTTCTTAATTA
76616435 TGTGTTCTTAATTA
1 T-TGTTCTTAATTA
76616449 TTGTT
1 TTGTT
76616454 TTGATATCCC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 5 0.28
14 13 0.72
ACGTcount: A:0.19, C:0.06, G:0.12, T:0.62
Consensus pattern (13 bp):
TTGTTCTTAATTA
Found at i:76617217 original size:21 final size:20
Alignment explanation
Indices: 76617188--76617233 Score: 51
Period size: 21 Copynumber: 2.3 Consensus size: 20
76617178 CGAAATGCAA
76617188 TCAACCTAACA-TGAATTAAAT
1 TCAACCTAA-ATTG-ATTAAAT
*
76617209 TCAAGCTAAATTGATTAAAT
1 TCAACCTAAATTGATTAAAT
76617229 T-AACC
1 TCAACC
76617234 ATTCCAACAA
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
19 3 0.14
20 9 0.41
21 10 0.45
ACGTcount: A:0.46, C:0.17, G:0.07, T:0.30
Consensus pattern (20 bp):
TCAACCTAAATTGATTAAAT
Found at i:76641377 original size:80 final size:79
Alignment explanation
Indices: 76641234--76641409 Score: 282
Period size: 80 Copynumber: 2.2 Consensus size: 79
76641224 GACCAAAGTG
* * *
76641234 TAAATATGTGAAAGTTTAAGGGCAAAATTGTAATTTTTCTAAAGTATGATTTATGGACTGATTTG
1 TAAATAAGTGAAAGTTTAAGGGAAAAATTGTAATTTTTCCAAAGTATGATTTATGGACTGATTTG
76641299 AATAAAGTGATAAT
66 AATAAAGTGATAAT
* *
76641313 TAAATAAGAGAAAGTTTAGGGGAAAAATTGTAATTTTTTCCAAAGTATGATTTATGGACTGATTT
1 TAAATAAGTGAAAGTTTAAGGGAAAAATTGTAA-TTTTTCCAAAGTATGATTTATGGACTGATTT
*
76641378 GAATAATGTGATAAT
65 GAATAAAGTGATAAT
76641393 TAAATAAGTGAAA-TTTA
1 TAAATAAGTGAAAGTTTA
76641410 CTATTATAGA
Statistics
Matches: 89, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
79 33 0.37
80 56 0.63
ACGTcount: A:0.41, C:0.03, G:0.19, T:0.37
Consensus pattern (79 bp):
TAAATAAGTGAAAGTTTAAGGGAAAAATTGTAATTTTTCCAAAGTATGATTTATGGACTGATTTG
AATAAAGTGATAAT
Found at i:76641802 original size:48 final size:48
Alignment explanation
Indices: 76641686--76641963 Score: 253
Period size: 48 Copynumber: 5.8 Consensus size: 48
76641676 GGGTTGGTGA
* * * * *
76641686 GATCCCGT-TAAGACCATATCTGGGATATGGCATCGACATCGATATGAGT
1 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATAT--GT
* *
76641735 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGTATCGCTATGT
1 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGT
* *
76641783 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATTGATATGA
1 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGT
* * * * * * *
76641831 GAACATCATGTAAGACCATAG-ATGGGATATCG-ACTTTG-AT--ATGTGT
1 GATC-CCATGTAAGACCAT-GTCTGGGACATGGCA-TTGGCATCGATATGT
* * *
76641877 GATCCCATGTAAGACCATGTGTGGGACATGGCATTGGCATCAATAAGT
1 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGT
* * * * *
76641925 GTTCCCATGTAAGAACATATTTGGGATATGGCATTGGCA
1 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
76641964 CCGTACTTTG
Statistics
Matches: 188, Mismatches: 32, Indels: 19
0.79 0.13 0.08
Matches are distributed among these distances:
44 1 0.01
45 24 0.13
46 10 0.05
48 90 0.48
49 31 0.16
50 32 0.17
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.28
Consensus pattern (48 bp):
GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGT
Found at i:76645984 original size:40 final size:40
Alignment explanation
Indices: 76645919--76646014 Score: 106
Period size: 40 Copynumber: 2.4 Consensus size: 40
76645909 GACTATTTTT
* * *
76645919 GGCACTAAGTGTGCGATTTGAAATAGTTTCAGCTATAAAT-A
1 GGCACTAAGTGTGTGAATTGAAATAGCTTCA--TATAAATGA
* **
76645960 -GCACTAAGTGTGTGAATTGGAATAGCTTCATATATTTGA
1 GGCACTAAGTGTGTGAATTGAAATAGCTTCATATAAATGA
76645999 GGCACTAAGTGTGTGA
1 GGCACTAAGTGTGTGA
76646015 TGCCGAGATA
Statistics
Matches: 47, Mismatches: 6, Indels: 5
0.81 0.10 0.09
Matches are distributed among these distances:
38 5 0.11
39 1 0.02
40 41 0.87
ACGTcount: A:0.31, C:0.11, G:0.25, T:0.32
Consensus pattern (40 bp):
GGCACTAAGTGTGTGAATTGAAATAGCTTCATATAAATGA
Found at i:76650674 original size:81 final size:81
Alignment explanation
Indices: 76650490--76650677 Score: 196
Period size: 81 Copynumber: 2.3 Consensus size: 81
76650480 AATACTTTTG
* * * ** *
76650490 TTTACCAAATTACTAAAATACCCTCGACTTGTAAAATTACCAAAGTACCCTCAATTTACAGAATT
1 TTTACAAAATTACTGAAATACCCTTGACTTACAAAATTACCAAAGTACCCTCAATTTACAAAATT
76650555 ACTGTTTTACCCTCGA
66 ACTGTTTTACCCTCGA
* * * *** * **** *
76650571 TTTACAGATTTACCGTTTTACCCTTGATTTACAAAATTACCGTTTTACCCTCGATTTACAAAATT
1 TTTACAAAATTACTGAAATACCCTTGACTTACAAAATTACCAAAGTACCCTCAATTTACAAAATT
* *
76650636 ATTGTTTTACCCTTGA
66 ACTGTTTTACCCTCGA
76650652 TTTACAAAATTACTGAAATACCCTTG
1 TTTACAAAATTACTGAAATACCCTTG
76650678 TAGGGTAGAA
Statistics
Matches: 81, Mismatches: 26, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
81 81 1.00
ACGTcount: A:0.32, C:0.22, G:0.08, T:0.37
Consensus pattern (81 bp):
TTTACAAAATTACTGAAATACCCTTGACTTACAAAATTACCAAAGTACCCTCAATTTACAAAATT
ACTGTTTTACCCTCGA
Found at i:76650677 original size:27 final size:27
Alignment explanation
Indices: 76650535--76650666 Score: 183
Period size: 27 Copynumber: 4.9 Consensus size: 27
76650525 ATTACCAAAG
* *
76650535 TACCCTCAATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
* * *
76650562 TACCCTCGATTTACAGATTTACCGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
* *
76650589 TACCCTTGATTTACAAAATTACCGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
*
76650616 TACCCTCGATTTACAAAATTATTGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
*
76650643 TACCCTTGATTTACAAAATTACTG
1 TACCCTCGATTTACAAAATTACTG
76650667 AAATACCCTT
Statistics
Matches: 94, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 94 1.00
ACGTcount: A:0.29, C:0.22, G:0.08, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACTGTTT
Found at i:76650698 original size:27 final size:27
Alignment explanation
Indices: 76650667--76650909 Score: 256
Period size: 27 Copynumber: 9.0 Consensus size: 27
76650657 AAAATTACTG
* *
76650667 AAATACCCTTGTAGGGTAGAAATACCG
1 AAATACCCCTGTAGGGTAGAAATACCA
* * * *
76650694 GAATACCCTTTTAGGGTCGAAATACCA
1 AAATACCCCTGTAGGGTAGAAATACCA
* *
76650721 AAATACCCCTATAGGATAGAAATACCA
1 AAATACCCCTGTAGGGTAGAAATACCA
* *
76650748 AAATACCCCTGTAGGGTAGAATTACTA
1 AAATACCCCTGTAGGGTAGAAATACCA
*
76650775 AAATACCCCTGTAGGGTA-AAATTACCG
1 AAATACCCCTGTAGGGTAGAAA-TACCA
*
76650802 AAATACCCTTGTAGGGTAGAAATACCA
1 AAATACCCCTGTAGGGTAGAAATACCA
* * * *
76650829 AAATTCCCCTATAGGGTAGAATTACTA
1 AAATACCCCTGTAGGGTAGAAATACCA
* * *
76650856 AAATACCCCTATAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAAATACCA
* * *
76650883 AGATACCCTTGTCGGGTA-AAATTACCA
1 AAATACCCCTGTAGGGTAGAAA-TACCA
76650910 TTTTACCCCT
Statistics
Matches: 181, Mismatches: 32, Indels: 6
0.83 0.15 0.03
Matches are distributed among these distances:
26 4 0.02
27 174 0.96
28 3 0.02
ACGTcount: A:0.38, C:0.21, G:0.18, T:0.24
Consensus pattern (27 bp):
AAATACCCCTGTAGGGTAGAAATACCA
Found at i:76650891 original size:81 final size:81
Alignment explanation
Indices: 76650667--76650909 Score: 290
Period size: 81 Copynumber: 3.0 Consensus size: 81
76650657 AAAATTACTG
* * * *** * * * * * * *
76650667 AAATACCCTTGTAGGGTAGAAATACCGGAATACCCTTTTAGGGTCGAAATACCAAAATACCCCTA
1 AAATACCCCTATAGGGTAGAATTACTAAAATACCCCTATAGGGTAGAATTACCGAAATACCCTTG
*
76650732 TAGGATAGAAATACCA
66 TAGGGTAGAAATACCA
* * *
76650748 AAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTGTAGGGTAAAATTACCGAAATACCCTTG
1 AAATACCCCTATAGGGTAGAATTACTAAAATACCCCTATAGGGTAGAATTACCGAAATACCCTTG
76650813 TAGGGTAGAAATACCA
66 TAGGGTAGAAATACCA
* *
76650829 AAATTCCCCTATAGGGTAGAATTACTAAAATACCCCTATAGGGTAGAATTACCGAGATACCCTTG
1 AAATACCCCTATAGGGTAGAATTACTAAAATACCCCTATAGGGTAGAATTACCGAAATACCCTTG
*
76650894 TCGGGTA-AAATTACCA
66 TAGGGTAGAAA-TACCA
76650910 TTTTACCCCT
Statistics
Matches: 141, Mismatches: 20, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
80 3 0.02
81 138 0.98
ACGTcount: A:0.38, C:0.21, G:0.18, T:0.24
Consensus pattern (81 bp):
AAATACCCCTATAGGGTAGAATTACTAAAATACCCCTATAGGGTAGAATTACCGAAATACCCTTG
TAGGGTAGAAATACCA
Found at i:76651293 original size:27 final size:26
Alignment explanation
Indices: 76651241--76651300 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
76651231 CGCCATATAT
*
76651241 ATATCTGTTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* * *
76651267 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
76651294 ATATCTG
1 ATATCTG
76651301 GCAGCCTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:76651428 original size:6 final size:6
Alignment explanation
Indices: 76651419--76651602 Score: 153
Period size: 6 Copynumber: 29.8 Consensus size: 6
76651409 TTGCATTCAT
* *
76651419 ATTCTG ATTCTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTG -TTACCTA
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATT--CTG
* *
76651469 ATTCTG ATTCTG GTTCTG ATTCTG ATTCTG -TTACTTG ATACTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATT-C-TG ATTCTG ATTCTG
* * * *
76651518 ATTCTG -TTACCTA ATTCTA ATTCTG ATTCTG ATTTTG ATTCTG -TCACTTG
1 ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG AT-TC-TG
* *
76651568 ATTCTG ATTCTG ATTCTG ATTCTC ATTTTG ATTCT
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCT
76651603 TGTTTTGATA
Statistics
Matches: 145, Mismatches: 18, Indels: 30
0.75 0.09 0.16
Matches are distributed among these distances:
5 9 0.06
6 116 0.80
7 13 0.09
8 7 0.05
ACGTcount: A:0.18, C:0.18, G:0.14, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:76651450 original size:19 final size:19
Alignment explanation
Indices: 76651447--76651579 Score: 112
Period size: 19 Copynumber: 6.8 Consensus size: 19
76651437 TTACCTGATA
76651447 CTGATTCTGATTCTGTTAC
1 CTGATTCTGATTCTGTTAC
*
76651466 CTAATTCTGATTCTGGTT--
1 CTGATTCTGATTCT-GTTAC
76651484 CTGATTCTGATTCTGTTAC
1 CTGATTCTGATTCTGTTAC
76651503 TTGATACTGATTCTGATTCTGTTAC
1 ------CTGATTCTGATTCTGTTAC
* *
76651528 CTAATTCTAATTCTGATT--
1 CTGATTCTGATTCTG-TTAC
* *
76651546 CTGATTTTGATTCTGTCAC
1 CTGATTCTGATTCTGTTAC
*
76651565 TTGATTCTGATTCTG
1 CTGATTCTGATTCTG
76651580 ATTCTGATTC
Statistics
Matches: 92, Mismatches: 10, Indels: 24
0.73 0.08 0.19
Matches are distributed among these distances:
17 4 0.04
18 25 0.27
19 39 0.42
20 5 0.05
25 19 0.21
ACGTcount: A:0.18, C:0.18, G:0.15, T:0.49
Consensus pattern (19 bp):
CTGATTCTGATTCTGTTAC
Found at i:76651450 original size:25 final size:25
Alignment explanation
Indices: 76651422--76651486 Score: 103
Period size: 25 Copynumber: 2.6 Consensus size: 25
76651412 CATTCATATT
*
76651422 CTGATTCTGATTCTGTTACCTGATA
1 CTGATTCTGATTCTGTTACCTAATA
*
76651447 CTGATTCTGATTCTGTTACCTAATT
1 CTGATTCTGATTCTGTTACCTAATA
*
76651472 CTGATTCTGGTTCTG
1 CTGATTCTGATTCTG
76651487 ATTCTGATTC
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
25 37 1.00
ACGTcount: A:0.17, C:0.20, G:0.17, T:0.46
Consensus pattern (25 bp):
CTGATTCTGATTCTGTTACCTAATA
Found at i:76651488 original size:37 final size:37
Alignment explanation
Indices: 76651441--76651523 Score: 121
Period size: 37 Copynumber: 2.2 Consensus size: 37
76651431 ATTCTGTTAC
* *
76651441 CTGATACTGATTCTGATTCTGTTACCTAATTCTGATT
1 CTGATTCTGATTCTGATTCTGTTACCTAATACTGATT
* * *
76651478 CTGGTTCTGATTCTGATTCTGTTACTTGATACTGATT
1 CTGATTCTGATTCTGATTCTGTTACCTAATACTGATT
76651515 CTGATTCTG
1 CTGATTCTG
76651524 TTACCTAATT
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
37 40 1.00
ACGTcount: A:0.18, C:0.18, G:0.17, T:0.47
Consensus pattern (37 bp):
CTGATTCTGATTCTGATTCTGTTACCTAATACTGATT
Found at i:76651514 original size:25 final size:25
Alignment explanation
Indices: 76651484--76651548 Score: 94
Period size: 25 Copynumber: 2.6 Consensus size: 25
76651474 GATTCTGGTT
* *
76651484 CTGATTCTGATTCTGTTACTTGATA
1 CTGATTCTGATTCTGTTACCTAATA
*
76651509 CTGATTCTGATTCTGTTACCTAATT
1 CTGATTCTGATTCTGTTACCTAATA
*
76651534 CTAATTCTGATTCTG
1 CTGATTCTGATTCTG
76651549 ATTTTGATTC
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 36 1.00
ACGTcount: A:0.20, C:0.18, G:0.14, T:0.48
Consensus pattern (25 bp):
CTGATTCTGATTCTGTTACCTAATA
Found at i:76651517 original size:62 final size:62
Alignment explanation
Indices: 76651419--76651585 Score: 280
Period size: 62 Copynumber: 2.7 Consensus size: 62
76651409 TTGCATTCAT
* *
76651419 ATTCTGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTGTTACCTAATTCTGATTCTG
1 ATTCTGATTCTGATTCTGTTACTTGATACTGATTCTGATTCTGTTACCTAATTCTAATTCTG
*
76651481 GTTCTGATTCTGATTCTGTTACTTGATACTGATTCTGATTCTGTTACCTAATTCTAATTCTG
1 ATTCTGATTCTGATTCTGTTACTTGATACTGATTCTGATTCTGTTACCTAATTCTAATTCTG
* * *
76651543 ATTCTGATTTTGATTCTGTCACTTGATTCTGATTCTGATTCTG
1 ATTCTGATTCTGATTCTGTTACTTGATACTGATTCTGATTCTG
76651586 ATTCTCATTT
Statistics
Matches: 98, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
62 98 1.00
ACGTcount: A:0.19, C:0.18, G:0.15, T:0.49
Consensus pattern (62 bp):
ATTCTGATTCTGATTCTGTTACTTGATACTGATTCTGATTCTGTTACCTAATTCTAATTCTG
Found at i:76651550 original size:37 final size:37
Alignment explanation
Indices: 76651504--76651590 Score: 120
Period size: 37 Copynumber: 2.4 Consensus size: 37
76651494 TTCTGTTACT
* *
76651504 TGATACTGATTCTGATTCTGTTACCTAATTCTAATTC
1 TGATTCTGATTCTGATTCTGTCACCTAATTCTAATTC
* * * *
76651541 TGATTCTGATTTTGATTCTGTCACTTGATTCTGATTC
1 TGATTCTGATTCTGATTCTGTCACCTAATTCTAATTC
76651578 TGATTCTGATTCT
1 TGATTCTGATTCT
76651591 CATTTTGATT
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
37 43 1.00
ACGTcount: A:0.20, C:0.17, G:0.14, T:0.49
Consensus pattern (37 bp):
TGATTCTGATTCTGATTCTGTCACCTAATTCTAATTC
Found at i:76651599 original size:18 final size:18
Alignment explanation
Indices: 76651419--76651602 Score: 90
Period size: 19 Copynumber: 9.9 Consensus size: 18
76651409 TTGCATTCAT
*
76651419 ATTCTGATTCTGATTCTG
1 ATTCTCATTCTGATTCTG
* *
76651437 -TTACCTGATACTGATTCTG
1 ATT--CTCATTCTGATTCTG
* *
76651456 ATTCT-GTTACCTAATTCTG
1 ATTCTCATT--CTGATTCTG
**
76651475 ATTCTGGTTCTGATTCTG
1 ATTCTCATTCTGATTCTG
* *
76651493 ATTCT-GTTACTTGATACTG
1 ATTCTCATT-C-TGATTCTG
* *
76651512 ATTCTGATTCTG-TTACCTA
1 ATTCTCATTCTGATT--CTG
*
76651531 ATTCTAATTCTGATTCTG
1 ATTCTCATTCTGATTCTG
* * *
76651549 ATTTTGATTCTG-TCACTTG
1 ATTCTCATTCTGAT-TC-TG
*
76651568 ATTCTGATTCTGATTCTG
1 ATTCTCATTCTGATTCTG
*
76651586 ATTCTCATTTTGATTCT
1 ATTCTCATTCTGATTCT
76651603 TGTTTTGATA
Statistics
Matches: 133, Mismatches: 18, Indels: 30
0.73 0.10 0.17
Matches are distributed among these distances:
17 8 0.06
18 48 0.36
19 67 0.50
20 10 0.08
ACGTcount: A:0.18, C:0.18, G:0.14, T:0.49
Consensus pattern (18 bp):
ATTCTCATTCTGATTCTG
Found at i:76654742 original size:20 final size:20
Alignment explanation
Indices: 76654716--76654782 Score: 100
Period size: 20 Copynumber: 3.4 Consensus size: 20
76654706 ATTTTGATAT
76654716 ACATGAT-TGATATGATATGC
1 ACATGATATG-TATGATATGC
*
76654736 TCATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
76654756 ACATGATATGTATGGTATGC
1 ACATGATATGTATGATATGC
76654776 ACATGAT
1 ACATGAT
76654783 GTATTCATAA
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
20 41 0.95
21 2 0.05
ACGTcount: A:0.33, C:0.10, G:0.21, T:0.36
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:76654743 original size:11 final size:11
Alignment explanation
Indices: 76654727--76654782 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
76654717 CATGATTGAT
76654727 ATGATATGCTC
1 ATGATATGCTC
76654738 ATGATATG-T-
1 ATGATATGCTC
*
76654747 ATGATATGCAC
1 ATGATATGCTC
76654758 ATGATATG-T-
1 ATGATATGCTC
* *
76654767 ATGGTATGCAC
1 ATGATATGCTC
76654778 ATGAT
1 ATGAT
76654783 GTATTCATAA
Statistics
Matches: 36, Mismatches: 5, Indels: 8
0.73 0.10 0.16
Matches are distributed among these distances:
9 15 0.42
10 1 0.03
11 20 0.56
ACGTcount: A:0.32, C:0.11, G:0.21, T:0.36
Consensus pattern (11 bp):
ATGATATGCTC
Found at i:76654930 original size:25 final size:26
Alignment explanation
Indices: 76654832--76654955 Score: 180
Period size: 26 Copynumber: 4.8 Consensus size: 26
76654822 GAGGAAGTGC
76654832 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
76654858 AAAAACGGCTTATGCCCCAGTTTATTG
1 -AAAAGGGCTTATGCCCCAGTTTATTG
*
76654885 AAAAGGGCTTATGCCCCAGTTTTTTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
* **
76654911 AAAAGGGATT-TGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
76654936 AAAAGGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
76654956 ATTAAAGAGG
Statistics
Matches: 89, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
25 31 0.35
26 33 0.37
27 25 0.28
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.29
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:76661112 original size:27 final size:27
Alignment explanation
Indices: 76661081--76661258 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
76661071 TAAATTGTAC
76661081 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
76661108 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
76661134 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
76661162 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
76661190 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
76661217 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
76661244 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
76661259 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:76661195 original size:82 final size:81
Alignment explanation
Indices: 76661082--76661237 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
76661072 AAATTGTACA
* *
76661082 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
76661146 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
76661163 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
76661228 TGCGAGTTGA
65 TGCGAATTGA
76661238 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:76661249 original size:82 final size:81
Alignment explanation
Indices: 76661078--76661258 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
76661068 GATTAAATTG
* *
76661078 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
76661143 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
76661159 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
76661223 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
76661241 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
76661259 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:76665261 original size:38 final size:38
Alignment explanation
Indices: 76665218--76665336 Score: 139
Period size: 38 Copynumber: 3.1 Consensus size: 38
76665208 GAAGGCCCAA
** * * * *
76665218 ATATAATACTTGCACTAGGCCTGCGGGATTTATCCTGG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
76665256 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
** *
76665294 ATATTTTACCAGCACGAAGCCTGCGGGTCTTTAAGCCCGG
1 ATATAATACCAGCACGAAGCCTGCGGG-ATTTAA-CCCGG
76665334 ATA
1 ATA
76665337 CACATCAAAT
Statistics
Matches: 70, Mismatches: 9, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
38 57 0.81
39 5 0.07
40 8 0.11
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.25
Consensus pattern (38 bp):
ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
Found at i:76666755 original size:20 final size:21
Alignment explanation
Indices: 76666717--76666756 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
76666707 AAACTTAATC
*
76666717 TTATAATCATTTTTGTAAAAT
1 TTATAATCATTTTTATAAAAT
*
76666738 TTATAATGA-TTTTATAAAA
1 TTATAATCATTTTTATAAAA
76666757 ACAGAACAGA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.42, C:0.03, G:0.05, T:0.50
Consensus pattern (21 bp):
TTATAATCATTTTTATAAAAT
Found at i:76669321 original size:30 final size:30
Alignment explanation
Indices: 76669284--76669352 Score: 111
Period size: 30 Copynumber: 2.3 Consensus size: 30
76669274 ATTGGGCAAA
*
76669284 CCGTGTGTCATACACGGCCTAGACACGAGC
1 CCGTGTGTCACACACGGCCTAGACACGAGC
* *
76669314 CTGTGTGTCACACACGGCCTAGTCACGAGC
1 CCGTGTGTCACACACGGCCTAGACACGAGC
76669344 CCGTGTGTC
1 CCGTGTGTC
76669353 TCCCCATGTG
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 35 1.00
ACGTcount: A:0.19, C:0.33, G:0.28, T:0.20
Consensus pattern (30 bp):
CCGTGTGTCACACACGGCCTAGACACGAGC
Found at i:76675374 original size:42 final size:40
Alignment explanation
Indices: 76675279--76675481 Score: 263
Period size: 40 Copynumber: 5.0 Consensus size: 40
76675269 GCTCCTCGTT
* * *
76675279 CAAATGCCTTCGGGACATAGCCCAG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
76675319 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCCAA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCG-C-A
76675361 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
76675401 CCAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 -CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
76675441 CAAATGCCTTCGGG-CTTAG-CCGGAATTAGTATCTCGACA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCG-CA
76675480 CA
1 CA
76675482 GTATTCGCAC
Statistics
Matches: 150, Mismatches: 7, Indels: 13
0.88 0.04 0.08
Matches are distributed among these distances:
38 17 0.11
39 24 0.16
40 55 0.37
41 18 0.12
42 36 0.24
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:76675374 original size:82 final size:80
Alignment explanation
Indices: 76675279--76675476 Score: 253
Period size: 82 Copynumber: 2.5 Consensus size: 80
76675269 GCTCCTCGTT
* *
76675279 CAAATGCCTTCGGGACATAGCCCAG-TTATAGTAAT-TCGCA-CAAATGCCTTCGGGACTTAACC
1 CAAATGCCTTCGGGACATAGCCCGGAAT-TAGT-ATCTCGCACCAAATGCCTTCGGG-CTTAACC
*
76675341 CGGATTTAGTAACTCGCCAA
63 CGGAATTAGTAACTCG-C-A
* *
76675361 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCACCAAATGCCTTCGGGCTTAGCCCGG
1 CAAATGCCTTCGGGACATAGCCCGGAATTAGTATCTCGCACCAAATGCCTTCGGGCTTAACCCGG
*
76675426 AATTAGTATCTCGCA
66 AATTAGTAACTCGCA
*
76675441 CAAATGCCTTCGGG-CTTAG-CCGGAATTAGTATCTCG
1 CAAATGCCTTCGGGACATAGCCCGGAATTAGTATCTCG
76675477 ACACAGTATT
Statistics
Matches: 107, Mismatches: 6, Indels: 10
0.87 0.05 0.08
Matches are distributed among these distances:
78 17 0.16
79 5 0.05
80 15 0.14
81 3 0.03
82 52 0.49
83 15 0.14
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (80 bp):
CAAATGCCTTCGGGACATAGCCCGGAATTAGTATCTCGCACCAAATGCCTTCGGGCTTAACCCGG
AATTAGTAACTCGCA
Found at i:76683314 original size:39 final size:39
Alignment explanation
Indices: 76683271--76683492 Score: 249
Period size: 39 Copynumber: 5.6 Consensus size: 39
76683261 GCTCCTCGTT
* *
76683271 CAAATGCCTTCGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
76683310 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTC-GGACTTAGCCCGGAATTAGTATCTCGCA
*
76683350 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGACTTAGCCCGGAATTAGTATCTCGCA
*
76683389 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGACTTAGCCCGGAATTAGTATCTCGCA
* *
76683428 CAAATGCCTTCGGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
76683469 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTC-GGACTTAGCCCGGA
76683493 CAGCATTCAA
Statistics
Matches: 164, Mismatches: 11, Indels: 16
0.86 0.06 0.08
Matches are distributed among these distances:
39 104 0.63
40 49 0.30
41 11 0.07
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (39 bp):
CAAATGCCTTCGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:76683370 original size:79 final size:78
Alignment explanation
Indices: 76683271--76683492 Score: 272
Period size: 79 Copynumber: 2.8 Consensus size: 78
76683261 GCTCCTCGTT
* *
76683271 CAAATGCCTTCGGACATAGCCCGGTTATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGGA
1 CAAATGCCTTCGGACTTAGCCCGG-TATAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCGGA
*
76683336 TTTAGTAACTCGCA
65 ATTAGTAACTCGCA
* *
76683350 CAAATGCCTTCGGGCTTAGCCCGGAATTAGT-ATCTCGCACAAATGCCTTCGGG-CTTAGCCCGG
1 CAAATGCCTTCGGACTTAGCCCGGTA-TAGTAAT-TCGCACAAATGCCTTCGGGACTTAGCCCGG
*
76683413 AATTAGTATCTCGCA
64 AATTAGTAACTCGCA
* * * *
76683428 CAAATGCCTTCGGATCTTAGTCCGGATATTGTCACTTAGCAC-AA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGA-CTTAGCCCGG-TATAGT-AATTCGCACAAATGCCTTCGGGACTTAGCCCG
76683491 GA
63 GA
76683493 CAGCATTCAA
Statistics
Matches: 124, Mismatches: 12, Indels: 14
0.83 0.08 0.09
Matches are distributed among these distances:
78 47 0.38
79 70 0.56
80 6 0.05
81 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (78 bp):
CAAATGCCTTCGGACTTAGCCCGGTATAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCGGAA
TTAGTAACTCGCA
Found at i:76683453 original size:118 final size:118
Alignment explanation
Indices: 76683271--76683492 Score: 285
Period size: 118 Copynumber: 1.9 Consensus size: 118
76683261 GCTCCTCGTT
*
76683271 CAAATGCCTTCGGACATAGCCCGGTTATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGGA
1 CAAATGCCTTCGGACATAGCCCGGATATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGGA
*
76683336 T-TTAGTAAC-TCGCACAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
66 TATT-GTAACTTAGCAC-AA-GCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* * **
76683389 CAAATGCCTTCGGGCTTAGCCCGGA-ATTAGT-ATCTCGCACAAATGCCTTC-GGATCTTAGTCC
1 CAAATGCCTTCGGACATAGCCCGGATA-TAGTAAT-TCGCACAAATGCCTTCGGGA-CTTAACCC
*
76683451 GGATATTGTCACTTAGCACAAGCCTTCGGGACTTAGCCCGGA
63 GGATATTGTAACTTAGCACAAGCCTTCGGGACTTAGCCCGGA
76683493 CAGCATTCAA
Statistics
Matches: 91, Mismatches: 7, Indels: 12
0.83 0.06 0.11
Matches are distributed among these distances:
117 15 0.16
118 69 0.76
119 7 0.08
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (118 bp):
CAAATGCCTTCGGACATAGCCCGGATATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGGA
TATTGTAACTTAGCACAAGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:76687480 original size:16 final size:14
Alignment explanation
Indices: 76687448--76687483 Score: 54
Period size: 16 Copynumber: 2.4 Consensus size: 14
76687438 GTAGTTTATT
76687448 TAATTATTTTAAAA
1 TAATTATTTTAAAA
76687462 TAATTACTTTTATAAA
1 TAATTA-TTTTA-AAA
76687478 TAATTA
1 TAATTA
76687484 AAAATGCACA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
14 6 0.30
15 5 0.25
16 9 0.45
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (14 bp):
TAATTATTTTAAAA
Found at i:76692595 original size:29 final size:29
Alignment explanation
Indices: 76692538--76692647 Score: 127
Period size: 29 Copynumber: 3.9 Consensus size: 29
76692528 TATCTGTATC
* * *
76692538 TGGCCCATTAAGCCC-AATCATATTCATA
1 TGGCCCATTAGGCCCAAATCACATTTATA
*
76692566 TGGCCCATTAGACCCAAATCAC-TTGTATA
1 TGGCCCATTAGGCCCAAATCACATT-TATA
*
76692595 TGACCCATTAGGCCCAAATCACATTTATA
1 TGGCCCATTAGGCCCAAATCACATTTATA
* *
76692624 TGGCCCGTTAGGCCC-AGTCACATT
1 TGGCCCATTAGGCCCAAATCACATT
76692648 CATAATCATG
Statistics
Matches: 70, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
28 23 0.33
29 45 0.64
30 2 0.03
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.27
Consensus pattern (29 bp):
TGGCCCATTAGGCCCAAATCACATTTATA
Found at i:76692890 original size:16 final size:16
Alignment explanation
Indices: 76692871--76692913 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 16
76692861 ACTTTCGGCT
*
76692871 TTTCTGCTTTTCAGCA
1 TTTCAGCTTTTCAGCA
* * *
76692887 TTTCGGCATTTCGGCA
1 TTTCAGCTTTTCAGCA
76692903 TTTCAGCTTTT
1 TTTCAGCTTTT
76692914 GCCAATACAT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.12, C:0.23, G:0.16, T:0.49
Consensus pattern (16 bp):
TTTCAGCTTTTCAGCA
Found at i:76692898 original size:24 final size:24
Alignment explanation
Indices: 76692863--76692909 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
76692853 GTAGCCAAAC
* * *
76692863 TTTCGGCTTTTCTGCTTTTCAGCA
1 TTTCGGCATTTCGGCATTTCAGCA
76692887 TTTCGGCATTTCGGCATTTCAGC
1 TTTCGGCATTTCGGCATTTCAGC
76692910 TTTTGCCAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.11, C:0.26, G:0.19, T:0.45
Consensus pattern (24 bp):
TTTCGGCATTTCGGCATTTCAGCA
Found at i:76694208 original size:16 final size:16
Alignment explanation
Indices: 76694187--76694218 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
76694177 AAGTTCGAGA
76694187 TTTCAGGATTATTGGG
1 TTTCAGGATTATTGGG
*
76694203 TTTCAGGATTTTTGGG
1 TTTCAGGATTATTGGG
76694219 GTGTTACACA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.16, C:0.06, G:0.31, T:0.47
Consensus pattern (16 bp):
TTTCAGGATTATTGGG
Found at i:76697368 original size:15 final size:15
Alignment explanation
Indices: 76697345--76697375 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
76697335 ATAGGAAAAG
*
76697345 TAAGGCCTACAACTA
1 TAAGACCTACAACTA
76697360 TAAGACCTACAACTA
1 TAAGACCTACAACTA
76697375 T
1 T
76697376 GACGATCCAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.42, C:0.26, G:0.10, T:0.23
Consensus pattern (15 bp):
TAAGACCTACAACTA
Found at i:76698378 original size:27 final size:27
Alignment explanation
Indices: 76698347--76698524 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
76698337 TAAATTGTAC
76698347 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
76698374 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
76698400 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
76698428 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
76698456 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
76698483 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
76698510 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
76698525 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:76698461 original size:82 final size:81
Alignment explanation
Indices: 76698348--76698503 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
76698338 AAATTGTACA
* *
76698348 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
76698412 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
76698429 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
76698494 TGCGAGTTGA
65 TGCGAATTGA
76698504 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:76698515 original size:82 final size:81
Alignment explanation
Indices: 76698344--76698524 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
76698334 GATTAAATTG
* *
76698344 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
76698409 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
76698425 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
76698489 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
76698507 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
76698525 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:76705185 original size:27 final size:27
Alignment explanation
Indices: 76705154--76705331 Score: 214
Period size: 27 Copynumber: 6.6 Consensus size: 27
76705144 TAAATTGTAC
76705154 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
76705181 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
76705207 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
76705235 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
*
76705263 AGCACTAAGTGTGCGATTTGATTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
76705290 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
76705317 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
76705332 GACTCGATAT
Statistics
Matches: 131, Mismatches: 17, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
27 108 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:76705268 original size:82 final size:81
Alignment explanation
Indices: 76705155--76705310 Score: 242
Period size: 82 Copynumber: 1.9 Consensus size: 81
76705145 AAATTGTACA
*
76705155 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGTA-GCACTAAGTG
76705219 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
76705236 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTATGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGTAGCACTAAGTG
*
76705301 TGCGAGTTGA
65 TGCGAATTGA
76705311 TTATATAGCA
Statistics
Matches: 68, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
81 15 0.22
82 52 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:76705322 original size:82 final size:81
Alignment explanation
Indices: 76705151--76705331 Score: 238
Period size: 82 Copynumber: 2.2 Consensus size: 81
76705141 GATTAAATTG
*
76705151 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGATGCACTAA
76705216 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
76705232 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTATG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGAT-GCACT
* **
76705296 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
76705314 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
76705332 GACTCGATAT
Statistics
Matches: 85, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
81 18 0.21
82 67 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGATGCACTAA
GTGTGCGAATTGACCA
Found at i:76708431 original size:71 final size:71
Alignment explanation
Indices: 76708315--76708456 Score: 284
Period size: 71 Copynumber: 2.0 Consensus size: 71
76708305 ATGCTGTTGG
76708315 AGCTGTGATGGGTCAAAGAAAAATAAAGTGTTCCACCCTATTTTCTACGCAAGTAGAACCTTGAC
1 AGCTGTGATGGGTCAAAGAAAAATAAAGTGTTCCACCCTATTTTCTACGCAAGTAGAACCTTGAC
76708380 GGGAGC
66 GGGAGC
76708386 AGCTGTGATGGGTCAAAGAAAAATAAAGTGTTCCACCCTATTTTCTACGCAAGTAGAACCTTGAC
1 AGCTGTGATGGGTCAAAGAAAAATAAAGTGTTCCACCCTATTTTCTACGCAAGTAGAACCTTGAC
76708451 GGGAGC
66 GGGAGC
76708457 CTAACTCAAT
Statistics
Matches: 71, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 71 1.00
ACGTcount: A:0.32, C:0.20, G:0.24, T:0.24
Consensus pattern (71 bp):
AGCTGTGATGGGTCAAAGAAAAATAAAGTGTTCCACCCTATTTTCTACGCAAGTAGAACCTTGAC
GGGAGC
Found at i:76710487 original size:43 final size:43
Alignment explanation
Indices: 76710426--76710577 Score: 161
Period size: 42 Copynumber: 3.6 Consensus size: 43
76710416 TGTGTTATTG
*
76710426 TGTAAGACCACGTCTGGGAC-TTGGCATCGACT-TATGATTTACA
1 TGTAAGACCATGTCTGGGACATTGGCATCGA-TATATGATTT-CA
* *
76710469 TGTAAGACCATGTCTGGGACATTGGCATCG-TATCTGATTTCG
1 TGTAAGACCATGTCTGGGACATTGGCATCGATATATGATTTCA
* * * *
76710511 TGTAAGACCCTGTCTGGG-TAGTGGCATCGATATTTGATTGT-A
1 TGTAAGACCATGTCTGGGACATTGGCATCGATATATGATT-TCA
* *
76710553 TATAAGACCATGTCTGGGACGTTGG
1 TGTAAGACCATGTCTGGGACATTGG
76710578 TATTGTATGA
Statistics
Matches: 91, Mismatches: 13, Indels: 10
0.80 0.11 0.09
Matches are distributed among these distances:
41 9 0.10
42 43 0.47
43 30 0.33
44 9 0.10
ACGTcount: A:0.23, C:0.18, G:0.27, T:0.32
Consensus pattern (43 bp):
TGTAAGACCATGTCTGGGACATTGGCATCGATATATGATTTCA
Found at i:76715892 original size:27 final size:26
Alignment explanation
Indices: 76715862--76715944 Score: 89
Period size: 27 Copynumber: 3.1 Consensus size: 26
76715852 ATCTCATATC
*
76715862 TGTAGGCTAGTATTACTGAAATACCCT
1 TGTAGG-TAGAATTACTGAAATACCCT
*
76715889 TGTAGAGTAGAATTACTGAAATGCACC-
1 TGTAG-GTAGAATTACTGAAATAC-CCT
76715916 TGTATGGTAGAATTACT-ATAATACCCT
1 TGTA-GGTAGAATTACTGA-AATACCCT
76715943 TG
1 TG
76715945 GTTTACAAAA
Statistics
Matches: 48, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
26 3 0.06
27 41 0.85
28 4 0.08
ACGTcount: A:0.33, C:0.16, G:0.19, T:0.33
Consensus pattern (26 bp):
TGTAGGTAGAATTACTGAAATACCCT
Found at i:76716327 original size:27 final size:27
Alignment explanation
Indices: 76715935--76716329 Score: 316
Period size: 27 Copynumber: 14.6 Consensus size: 27
76715925 GAATTACTAT
* ** *
76715935 AATACCCTTGGTTTACAAAATTACTG-
1 AATACCCTTGATTTGTAAAATTACCGA
* * ** *
76715961 GATACCCTTGGTTTACAAAATTACCAA
1 AATACCCTTGATTTGTAAAATTACCGA
* *
76715988 AATACCCTTGATTAGCAAAATTACC-A
1 AATACCCTTGATTTGTAAAATTACCGA
* *
76716014 TAATACCCCT-AGTTTGTAAAATTACCAA
1 -AATACCCTTGA-TTTGTAAAATTACCGA
*
76716042 AATACCCTT-AGTTTGTAAAATTACCAA
1 AATACCCTTGA-TTTGTAAAATTACCGA
* * * *
76716069 AATACCCCTAATTTGTGAAATTATCGA
1 AATACCCTTGATTTGTAAAATTACCGA
*
76716096 AATACCCTTGATCTGTAAAATTACCGA
1 AATACCCTTGATTTGTAAAATTACCGA
* * *
76716123 AATACCCTTGACTTGTGAAATTACAGA
1 AATACCCTTGATTTGTAAAATTACCGA
* * *
76716150 AATACCTTTAATTAT-TAAAATTACCAA
1 AATACCCTTGATT-TGTAAAATTACCGA
* * *
76716177 AATACCCCTGATTTGAAAAATTACCAA
1 AATACCCTTGATTTGTAAAATTACCGA
* * *
76716204 AATGCCCTTGATTTGGAAAATTACAGA
1 AATACCCTTGATTTGTAAAATTACCGA
* * ** **
76716231 AATACCCCTAATTTACAAAATTATAGA
1 AATACCCTTGATTTGTAAAATTACCGA
*
76716258 AATACCCTTGACTTT-TAAAAATTACAGA
1 AATACCCTTGA-TTTGT-AAAATTACCGA
* *
76716286 AATACCATTGGTTTGTAAAATTACCGA
1 AATACCCTTGATTTGTAAAATTACCGA
* *
76716313 AATATCCTTGGTTTGTA
1 AATACCCTTGATTTGTA
76716330 GATTTACCAA
Statistics
Matches: 305, Mismatches: 54, Indels: 19
0.81 0.14 0.05
Matches are distributed among these distances:
26 26 0.09
27 253 0.83
28 26 0.09
ACGTcount: A:0.39, C:0.19, G:0.10, T:0.32
Consensus pattern (27 bp):
AATACCCTTGATTTGTAAAATTACCGA
Found at i:76716638 original size:41 final size:41
Alignment explanation
Indices: 76716588--76716711 Score: 167
Period size: 41 Copynumber: 3.0 Consensus size: 41
76716578 GAGAAAGAAT
* *
76716588 TTGAAGATCGCATGGTTGCTTGATGACCGTGGATCCACCGA
1 TTGAGGATCGCATGGTTGCTTGACGACCGTGGATCCACCGA
* *
76716629 TTGAGGATCGCATGGTTTCTTGACGACCTTGGATCCACCGA
1 TTGAGGATCGCATGGTTGCTTGACGACCGTGGATCCACCGA
* * * **
76716670 TTAAGGATCGGATGGTTGCTTAACGATTGTGGATCCACCGA
1 TTGAGGATCGCATGGTTGCTTGACGACCGTGGATCCACCGA
76716711 T
1 T
76716712 GGCTTTTAAG
Statistics
Matches: 72, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
41 72 1.00
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (41 bp):
TTGAGGATCGCATGGTTGCTTGACGACCGTGGATCCACCGA
Found at i:76716899 original size:22 final size:21
Alignment explanation
Indices: 76716850--76716911 Score: 61
Period size: 22 Copynumber: 2.9 Consensus size: 21
76716840 AATTATTCTA
* *
76716850 ATTATGGCTTTGCGCCAACCT
1 ATTATGGCTCTGTGCCAACCT
*
76716871 ACATATGGCTCTGTGCCAACCT
1 A-TTATGGCTCTGTGCCAACCT
* *
76716893 GATTATGGCTGTTTGCCAA
1 -ATTATGGCTCTGTGCCAA
76716912 ACGTATTTAC
Statistics
Matches: 33, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
21 1 0.03
22 31 0.94
23 1 0.03
ACGTcount: A:0.21, C:0.26, G:0.21, T:0.32
Consensus pattern (21 bp):
ATTATGGCTCTGTGCCAACCT
Found at i:76717139 original size:22 final size:22
Alignment explanation
Indices: 76717114--76717167 Score: 72
Period size: 22 Copynumber: 2.5 Consensus size: 22
76717104 ATTGCTGCGA
*
76717114 TGTTTACGGCTATGTCCTATCC
1 TGTTTACGGCTATATCCTATCC
* *
76717136 TGTTTATGGCTATATGCTATCC
1 TGTTTACGGCTATATCCTATCC
*
76717158 TGTCTACGGC
1 TGTTTACGGC
76717168 GTTGAGCCGT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.15, C:0.24, G:0.20, T:0.41
Consensus pattern (22 bp):
TGTTTACGGCTATATCCTATCC
Found at i:76718544 original size:27 final size:26
Alignment explanation
Indices: 76718509--76718608 Score: 137
Period size: 27 Copynumber: 3.7 Consensus size: 26
76718499 AGCATGGCTG
* *
76718509 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
76718535 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
76718563 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
*
76718590 CCAGATCAGATAATTGTGG
1 CCAGAACAGATAA-TGTGG
76718609 GGTAGCCACC
Statistics
Matches: 67, Mismatches: 3, Indels: 7
0.87 0.04 0.09
Matches are distributed among these distances:
26 6 0.09
27 44 0.66
28 17 0.25
ACGTcount: A:0.37, C:0.21, G:0.25, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:76723823 original size:43 final size:42
Alignment explanation
Indices: 76723761--76723918 Score: 164
Period size: 42 Copynumber: 3.7 Consensus size: 42
76723751 ATATGTGTTA
*
76723761 TCGTGTAAGACCACGTCTGGGAC-TTGGTATCG-ACTTATGATT
1 TCGTGTAAGACCACGTCTGGGACATTGGCATCGTA--TATGATT
*
76723803 TACGTGTAAGACCACGTCTGGGACATTGGCATCGTATCTGATT
1 T-CGTGTAAGACCACGTCTGGGACATTGGCATCGTATATGATT
*
76723846 TCGTGTAAGACC-CTGTCTGGG-CAGTGGCATCG-ATAATTGATT
1 TCGTGTAAGACCAC-GTCTGGGACATTGGCATCGTAT-A-TGATT
* * * *
76723888 GCATGTAAGACCATGTCTGGGACGTTGGCAT
1 TCGTGTAAGACCACGTCTGGGACATTGGCAT
76723919 TGTACGAGCT
Statistics
Matches: 99, Mismatches: 9, Indels: 15
0.80 0.07 0.12
Matches are distributed among these distances:
40 2 0.02
41 11 0.11
42 41 0.41
43 36 0.36
44 8 0.08
45 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (42 bp):
TCGTGTAAGACCACGTCTGGGACATTGGCATCGTATATGATT
Found at i:76728273 original size:6 final size:6
Alignment explanation
Indices: 76728262--76728322 Score: 54
Period size: 6 Copynumber: 9.8 Consensus size: 6
76728252 GATCAAAATG
*
76728262 AGAATC AGAATC AGAATC AG-GTGAC AGAATC AGAATC AGGTAA-C AGAATC
1 AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC A-G-AATC AGAATC
*
76728312 AAAATC AGAAT
1 AGAATC AGAAT
76728323 GTGAATGCAA
Statistics
Matches: 45, Mismatches: 4, Indels: 12
0.74 0.07 0.20
Matches are distributed among these distances:
5 3 0.07
6 33 0.73
7 6 0.13
8 3 0.07
ACGTcount: A:0.49, C:0.15, G:0.20, T:0.16
Consensus pattern (6 bp):
AGAATC
Found at i:76728291 original size:19 final size:19
Alignment explanation
Indices: 76728267--76728319 Score: 88
Period size: 19 Copynumber: 2.8 Consensus size: 19
76728257 AAATGAGAAT
*
76728267 CAGAATCAGAATCAGGTGA
1 CAGAATCAGAATCAGGTAA
76728286 CAGAATCAGAATCAGGTAA
1 CAGAATCAGAATCAGGTAA
*
76728305 CAGAATCAAAATCAG
1 CAGAATCAGAATCAG
76728320 AATGTGAATG
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 32 1.00
ACGTcount: A:0.47, C:0.17, G:0.21, T:0.15
Consensus pattern (19 bp):
CAGAATCAGAATCAGGTAA
Found at i:76728489 original size:27 final size:26
Alignment explanation
Indices: 76728441--76728500 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
76728431 GCGAGGCTGC
*
76728441 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
76728468 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
*
76728494 TAGATAT
1 CAGATAT
76728501 ATATATGTGG
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.35, C:0.18, G:0.23, T:0.23
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:76728790 original size:27 final size:27
Alignment explanation
Indices: 76728760--76729115 Score: 388
Period size: 27 Copynumber: 13.2 Consensus size: 27
76728750 AACACGCTAG
* *
76728760 GGGTAAAATGGTAATTTTATAAATCGA
1 GGGTAAAACGGTAATTTTGTAAATCGA
* *
76728787 GGGTAAAATGGTAATTCTGTAAATCGA
1 GGGTAAAACGGTAATTTTGTAAATCGA
** *
76728814 GGGTAAAAAAGTAATTTTTTAAATCGA
1 GGGTAAAACGGTAATTTTGTAAATCGA
* *
76728841 GGGTAAAACAGTAATTTTGTAAATTGA
1 GGGTAAAACGGTAATTTTGTAAATCGA
* ** * *
76728868 AGGTAAAATAGTAATTCTGTCAATCGA
1 GGGTAAAACGGTAATTTTGTAAATCGA
* * *
76728895 GGGTAAAACGGTAATTCTATAAATTGA
1 GGGTAAAACGGTAATTTTGTAAATCGA
**
76728922 GGGTAAAACAATAATTTTGTAAATCGA
1 GGGTAAAACGGTAATTTTGTAAATCGA
* * * *
76728949 AGGTAAAACGATAATTCTATAAATCGA
1 GGGTAAAACGGTAATTTTGTAAATCGA
* *
76728976 GGGTAAAACGATAATTCTGTAAATCGA
1 GGGTAAAACGGTAATTTTGTAAATCGA
* *
76729003 GGGTAAAACGATAATTTTGTAAATCAA
1 GGGTAAAACGGTAATTTTGTAAATCGA
*
76729030 GGGTAAAACGATAATTTTGTAAATCGA
1 GGGTAAAACGGTAATTTTGTAAATCGA
** * * *
76729057 GGGTAAAATAGTAATTCTATAAATTGA
1 GGGTAAAACGGTAATTTTGTAAATCGA
* *
76729084 GGGTAAAACAGTAATTTTGTAATTCGA
1 GGGTAAAACGGTAATTTTGTAAATCGA
*
76729111 AGGTA
1 GGGTA
76729116 CTTTAATAAT
Statistics
Matches: 283, Mismatches: 46, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 283 1.00
ACGTcount: A:0.42, C:0.07, G:0.21, T:0.30
Consensus pattern (27 bp):
GGGTAAAACGGTAATTTTGTAAATCGA
Found at i:76729125 original size:27 final size:27
Alignment explanation
Indices: 76729095--76729159 Score: 76
Period size: 27 Copynumber: 2.4 Consensus size: 27
76729085 GGTAAAACAG
* *
76729095 TAATTTTGTAATTCGAAGGTACTTTAA
1 TAATTTTGCAAGTCGAAGGTACTTTAA
* * * *
76729122 TAATTTTACAAGTCGAGGGTATTTTAG
1 TAATTTTGCAAGTCGAAGGTACTTTAA
76729149 TAATTTTGCAA
1 TAATTTTGCAA
76729160 ACTGAGGGTA
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.32, C:0.08, G:0.17, T:0.43
Consensus pattern (27 bp):
TAATTTTGCAAGTCGAAGGTACTTTAA
Found at i:76729128 original size:81 final size:80
Alignment explanation
Indices: 76728760--76729115 Score: 428
Period size: 81 Copynumber: 4.4 Consensus size: 80
76728750 AACACGCTAG
** * * ***
76728760 GGGTAAAATGGTAATTTTATAAATCGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAAAAG
1 GGGTAAAACAGTAATTTTGTAAATCGAAGGTAAAACAATAATTCTGTAAATCGAGGGT-AAAAAG
* *
76728825 TAATTTTTTAAATCGA
65 TAATTCTATAAATCGA
* * * * *
76728841 GGGTAAAACAGTAATTTTGTAAATTGAAGGTAAAATAGTAATTCTGTCAATCGAGGGTAAAACGG
1 GGGTAAAACAGTAATTTTGTAAATCGAAGGTAAAACAATAATTCTGTAAATCGAGGGTAAAA-AG
*
76728906 TAATTCTATAAATTGA
65 TAATTCTATAAATCGA
* * * *
76728922 GGGTAAAACAATAATTTTGTAAATCGAAGGTAAAACGATAATTCTATAAATCGAGGGTAAAACGA
1 GGGTAAAACAGTAATTTTGTAAATCGAAGGTAAAACAATAATTCTGTAAATCGAGGGTAAAAAG-
*
76728987 TAATTCTGTAAATCGA
65 TAATTCTATAAATCGA
* *
76729003 GGGTAAAAC-GATAATTTTGTAAATC-AAGGGTAAAACGATAATTTTGTAAATCGAGGGTAAAAT
1 GGGTAAAACAG-TAATTTTGTAAATCGAA-GGTAAAACAATAATTCTGTAAATCGAGGGTAAAA-
*
76729066 AGTAATTCTATAAATTGA
63 AGTAATTCTATAAATCGA
*
76729084 GGGTAAAACAGTAATTTTGTAATTCGAAGGTA
1 GGGTAAAACAGTAATTTTGTAAATCGAAGGTA
76729116 CTTTAATAAT
Statistics
Matches: 240, Mismatches: 28, Indels: 14
0.85 0.10 0.05
Matches are distributed among these distances:
80 7 0.03
81 229 0.95
82 4 0.02
ACGTcount: A:0.42, C:0.07, G:0.21, T:0.30
Consensus pattern (80 bp):
GGGTAAAACAGTAATTTTGTAAATCGAAGGTAAAACAATAATTCTGTAAATCGAGGGTAAAAAGT
AATTCTATAAATCGA
Found at i:76729151 original size:54 final size:52
Alignment explanation
Indices: 76729092--76729268 Score: 158
Period size: 54 Copynumber: 3.3 Consensus size: 52
76729082 GAGGGTAAAA
* ** *
76729092 CAGTAATTTTGTAATTCGAAGGTACTTTAATAATTTTACAAGTCGAGGGTATTT
1 CAGTAATTTTGTAA-ACGAAGGTACTTTGGTAATTTTACAAAT-GAGGGTATTT
* * * *
76729146 TAGTAATTTTGCAAACTGAGGGTA-TTTCGGTAATTTTACAAATTGAGGATATTT
1 CAGTAATTTTGTAAAC-GAAGGTACTTT-GGTAATTTTACAAA-TGAGGGTATTT
** * * * *
76729200 GGGTAATTTTATAAACCGGAGGTACTTTGGTAATTTTACAACTGGGGGTATTT
1 CAGTAATTTTGTAAA-CGAAGGTACTTTGGTAATTTTACAAATGAGGGTATTT
*
76729253 CAGTAATTTGGTAAAC
1 CAGTAATTTTGTAAAC
76729269 TAAAGTATTC
Statistics
Matches: 97, Mismatches: 21, Indels: 12
0.75 0.16 0.09
Matches are distributed among these distances:
52 1 0.01
53 24 0.25
54 67 0.69
55 5 0.05
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.39
Consensus pattern (52 bp):
CAGTAATTTTGTAAACGAAGGTACTTTGGTAATTTTACAAATGAGGGTATTT
Found at i:76729166 original size:27 final size:27
Alignment explanation
Indices: 76729122--76729261 Score: 126
Period size: 27 Copynumber: 5.2 Consensus size: 27
76729112 GGTACTTTAA
* **
76729122 TAATTTTAC-AAGTCGAGGGTATTTTAG
1 TAATTTTACAAACT-GAGGGTATTTCGG
*
76729149 TAATTTTGCAAACTGAGGGTATTTCGG
1 TAATTTTACAAACTGAGGGTATTTCGG
* * *
76729176 TAATTTTACAAATTGAGGATATTTGGG
1 TAATTTTACAAACTGAGGGTATTTCGG
* *
76729203 TAATTTTATAAACCG-GAGGTACTTT-GG
1 TAATTTTACAAACTGAG-GGTA-TTTCGG
* *
76729230 TAATTTTAC-AACTGGGGGTATTTCAG
1 TAATTTTACAAACTGAGGGTATTTCGG
76729256 TAATTT
1 TAATTT
76729262 GGTAAACTAA
Statistics
Matches: 93, Mismatches: 15, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
25 3 0.03
26 16 0.17
27 68 0.73
28 6 0.06
ACGTcount: A:0.29, C:0.09, G:0.22, T:0.40
Consensus pattern (27 bp):
TAATTTTACAAACTGAGGGTATTTCGG
Found at i:76734586 original size:27 final size:27
Alignment explanation
Indices: 76734548--76734603 Score: 103
Period size: 27 Copynumber: 2.1 Consensus size: 27
76734538 ATTTTATTAC
*
76734548 TTGTTGCGATTATGTACACTTGCACAT
1 TTGTTGCGATTATGTACACTTACACAT
76734575 TTGTTGCGATTATGTACACTTACACAT
1 TTGTTGCGATTATGTACACTTACACAT
76734602 TT
1 TT
76734604 CTGTCGTTTC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.23, C:0.18, G:0.16, T:0.43
Consensus pattern (27 bp):
TTGTTGCGATTATGTACACTTACACAT
Found at i:76735797 original size:63 final size:63
Alignment explanation
Indices: 76735724--76735847 Score: 248
Period size: 63 Copynumber: 2.0 Consensus size: 63
76735714 TCTATTGCAT
76735724 GGAAGGACATCTGTTCGAAGAATGTCCATCAAACCCAGAATCCATGTATTACATGGGTAACAG
1 GGAAGGACATCTGTTCGAAGAATGTCCATCAAACCCAGAATCCATGTATTACATGGGTAACAG
76735787 GGAAGGACATCTGTTCGAAGAATGTCCATCAAACCCAGAATCCATGTATTACATGGGTAAC
1 GGAAGGACATCTGTTCGAAGAATGTCCATCAAACCCAGAATCCATGTATTACATGGGTAAC
76735848 CAGAACCAAA
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
63 61 1.00
ACGTcount: A:0.35, C:0.21, G:0.22, T:0.23
Consensus pattern (63 bp):
GGAAGGACATCTGTTCGAAGAATGTCCATCAAACCCAGAATCCATGTATTACATGGGTAACAG
Found at i:76746182 original size:45 final size:47
Alignment explanation
Indices: 76746108--76746198 Score: 109
Period size: 45 Copynumber: 2.0 Consensus size: 47
76746098 TTGAAGATTT
*
76746108 ATATTAAAGTTTTTATATCTTGATTGTTTT-ATAAT-TTTAGTGTTTTG
1 ATATTAAAGTTTTTATATCTTGATGGTTTTCA-AATGTTT-GTGTTTTG
* *
76746155 ATATTTAA-TTTTTA-ATTTTGATGGTTTTCAAATGTTTGTGTTTT
1 ATATTAAAGTTTTTATATCTTGATGGTTTTCAAATGTTTGTGTTTT
76746199 AATTTCCATT
Statistics
Matches: 39, Mismatches: 3, Indels: 6
0.81 0.06 0.12
Matches are distributed among these distances:
45 22 0.56
46 10 0.26
47 7 0.18
ACGTcount: A:0.24, C:0.02, G:0.13, T:0.60
Consensus pattern (47 bp):
ATATTAAAGTTTTTATATCTTGATGGTTTTCAAATGTTTGTGTTTTG
Found at i:76750643 original size:20 final size:19
Alignment explanation
Indices: 76750620--76750661 Score: 50
Period size: 20 Copynumber: 2.2 Consensus size: 19
76750610 TAAAGAAAGT
76750620 AAAT-AAAATGGAAAGTAATG
1 AAATGAAAAT-GAAAGTAA-G
*
76750640 AAATGTAAATGAAAGTAAG
1 AAATGAAAATGAAAGTAAG
76750659 AAA
1 AAA
76750662 ATTTGAAAGG
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
19 4 0.20
20 12 0.60
21 4 0.20
ACGTcount: A:0.62, C:0.00, G:0.19, T:0.19
Consensus pattern (19 bp):
AAATGAAAATGAAAGTAAG
Found at i:76753660 original size:15 final size:16
Alignment explanation
Indices: 76753640--76753669 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
76753630 TGGTGCCTTA
76753640 TTGAT-ATGTGTTAAT
1 TTGATAATGTGTTAAT
76753655 TTGATAATGTGTTAA
1 TTGATAATGTGTTAA
76753670 AACATGTTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.30, C:0.00, G:0.20, T:0.50
Consensus pattern (16 bp):
TTGATAATGTGTTAAT
Found at i:76764752 original size:7 final size:7
Alignment explanation
Indices: 76764740--76764798 Score: 73
Period size: 7 Copynumber: 8.3 Consensus size: 7
76764730 TATTATATAA
76764740 GTTTAGG
1 GTTTAGG
76764747 GTTTAGG
1 GTTTAGG
* *
76764754 GTTCATG
1 GTTTAGG
76764761 GTTTAGG
1 GTTTAGG
*
76764768 GTTTTAAG
1 G-TTTAGG
*
76764776 CTTTAGG
1 GTTTAGG
76764783 GTTTAGG
1 GTTTAGG
76764790 GTTTAGG
1 GTTTAGG
76764797 GT
1 GT
76764799 ATGGATCTAT
Statistics
Matches: 43, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
7 38 0.88
8 5 0.12
ACGTcount: A:0.15, C:0.03, G:0.37, T:0.44
Consensus pattern (7 bp):
GTTTAGG
Found at i:76780823 original size:14 final size:14
Alignment explanation
Indices: 76780797--76780833 Score: 58
Period size: 14 Copynumber: 2.7 Consensus size: 14
76780787 TTGGAAATGA
76780797 TTATATG-AAATAG
1 TTATATGAAAATAG
76780810 TTATATGAAAATAG
1 TTATATGAAAATAG
*
76780824 ATATATGAAA
1 TTATATGAAA
76780834 TGGGACTTGG
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
13 7 0.32
14 15 0.68
ACGTcount: A:0.51, C:0.00, G:0.14, T:0.35
Consensus pattern (14 bp):
TTATATGAAAATAG
Found at i:76783389 original size:21 final size:21
Alignment explanation
Indices: 76783348--76783390 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
76783338 CAATGCTGAA
*
76783348 TCAAAGGTATCAATATTTATT
1 TCAAAGGTATCAATATCTATT
*
76783369 TCAAATGGTATCGATA-CTATT
1 TCAAA-GGTATCAATATCTATT
76783390 T
1 T
76783391 GGAAAATCGA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 10 0.53
22 9 0.47
ACGTcount: A:0.35, C:0.12, G:0.12, T:0.42
Consensus pattern (21 bp):
TCAAAGGTATCAATATCTATT
Found at i:76786278 original size:20 final size:20
Alignment explanation
Indices: 76786240--76786278 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
76786230 AACTTCTTCA
* *
76786240 CTTACTCACTTACTTAAATG
1 CTTACTCACTTAATCAAATG
*
76786260 CTTACTTACTTAATCAAAT
1 CTTACTCACTTAATCAAAT
76786279 TTATTAGTAC
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.33, C:0.23, G:0.03, T:0.41
Consensus pattern (20 bp):
CTTACTCACTTAATCAAATG
Found at i:76786669 original size:55 final size:54
Alignment explanation
Indices: 76786475--76786718 Score: 198
Period size: 55 Copynumber: 4.6 Consensus size: 54
76786465 TTACCATTTT
* * * * * *
76786475 CATGACTTGCCATGGTCTTACGTGGTATCCTT---TT-GA-AACTTACCATTTC
1 CATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAACTTACCAATGC
* * *
76786524 CATGTCTCGACATGGTTTTACATGGTATCCTTGCCTTAT-GAACTCACCAATGC
1 CATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAACTTACCAATGC
* * * * * * * *
76786577 CACGCCTTGGCATGGTCATACATGGGA-CATTTTCCTTATAGTAACTTATCAATGC
1 CATGTCTTGACATGGTCTTACATGGTATC-CTTGCCTTATAG-AACTTACCAATGC
* *
76786632 CATGTCTTGACATTGTCTTACATGGTATCCTTGCCTTAGA-AACCTTACCAATTGC
1 CATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAA-CTTACCAA-TGC
* * *
76786687 CATGACTTGGCATGGTTTTACATGGTATCCTT
1 CATGTCTTGACATGGTCTTACATGGTATCCTT
76786719 AAACTCTAAT
Statistics
Matches: 150, Mismatches: 34, Indels: 16
0.75 0.17 0.08
Matches are distributed among these distances:
49 27 0.18
52 3 0.02
53 40 0.27
54 8 0.05
55 71 0.47
56 1 0.01
ACGTcount: A:0.23, C:0.24, G:0.17, T:0.36
Consensus pattern (54 bp):
CATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAACTTACCAATGC
Found at i:76788158 original size:27 final size:27
Alignment explanation
Indices: 76788128--76788204 Score: 64
Period size: 27 Copynumber: 3.1 Consensus size: 27
76788118 TGTTAACTGG
76788128 TAGCGTTGCTGCGATACTTATGGCTTA
1 TAGCGTTGCTGCGATACTTATGGCTTA
**
76788155 TAGCAGTT-CTGTTA-AC---TGGC---
1 TAGC-GTTGCTGCGATACTTATGGCTTA
76788175 -AGCGTTGCTGCGATACTTATGGCTTA
1 TAGCGTTGCTGCGATACTTATGGCTTA
76788201 TAGC
1 TAGC
76788205 CGTTCTATTA
Statistics
Matches: 36, Mismatches: 4, Indels: 20
0.60 0.07 0.33
Matches are distributed among these distances:
18 3 0.08
19 7 0.19
20 2 0.06
23 8 0.22
26 2 0.06
27 11 0.31
28 3 0.08
ACGTcount: A:0.19, C:0.19, G:0.26, T:0.35
Consensus pattern (27 bp):
TAGCGTTGCTGCGATACTTATGGCTTA
Found at i:76788251 original size:46 final size:46
Alignment explanation
Indices: 76788094--76788235 Score: 221
Period size: 46 Copynumber: 3.1 Consensus size: 46
76788084 GCCTTTCTGT
* * *
76788094 GATACTTATGGCTTATGGCTGTTCTGTTAACTGGTAGCGTTGCTGC
1 GATACTTATGGCTTATAGCCGTTCTGTTAACTGGCAGCGTTGCTGC
*
76788140 GATACTTATGGCTTATAGCAGTTCTGTTAACTGGCAGCGTTGCTGC
1 GATACTTATGGCTTATAGCCGTTCTGTTAACTGGCAGCGTTGCTGC
* * *
76788186 GATACTTATGGCTTATAGCCGTTCTATTAACTGACAGCGTTGCTAC
1 GATACTTATGGCTTATAGCCGTTCTGTTAACTGGCAGCGTTGCTGC
76788232 GATA
1 GATA
76788236 GTTACAGCCT
Statistics
Matches: 89, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 89 1.00
ACGTcount: A:0.20, C:0.19, G:0.25, T:0.36
Consensus pattern (46 bp):
GATACTTATGGCTTATAGCCGTTCTGTTAACTGGCAGCGTTGCTGC
Found at i:76793326 original size:40 final size:40
Alignment explanation
Indices: 76793294--76793439 Score: 265
Period size: 40 Copynumber: 3.6 Consensus size: 40
76793284 TCCAGTACGA
*
76793294 AGCCTGTGGGTCTTTAAACCCGGATACAATTCCAGCATAT
1 AGCCTGCGGGTCTTTAAACCCGGATACAATTCCAGCATAT
*
76793334 AGCCTGCGGGTCTTTAAACCCGGATACAACTCCAGCATAT
1 AGCCTGCGGGTCTTTAAACCCGGATACAATTCCAGCATAT
76793374 AGCCTGCGGGTCTTTAAACCCGGATACAATTCCAGCATAT
1 AGCCTGCGGGTCTTTAAACCCGGATACAATTCCAGCATAT
*
76793414 AGCCTGCGGGTCTTTAAGCCCGGATA
1 AGCCTGCGGGTCTTTAAACCCGGATA
76793440 TACACATCAA
Statistics
Matches: 102, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 102 1.00
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
AGCCTGCGGGTCTTTAAACCCGGATACAATTCCAGCATAT
Found at i:76794844 original size:32 final size:32
Alignment explanation
Indices: 76794779--76794863 Score: 120
Period size: 32 Copynumber: 2.7 Consensus size: 32
76794769 CCAATCTCAA
*
76794779 CATA-TACTGGGTCGAAGCC-TTTTCATATCT
1 CATATTACTGGGCCGAAGCCTTTTTCATATCT
* *
76794809 CATATTATTGGGCCGAAGCCTTTTTCATATTT
1 CATATTACTGGGCCGAAGCCTTTTTCATATCT
*
76794841 CATATTACTGGGCTGAAGCCTTT
1 CATATTACTGGGCCGAAGCCTTT
76794864 ACTGTAAACG
Statistics
Matches: 48, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
30 4 0.08
31 13 0.27
32 31 0.65
ACGTcount: A:0.22, C:0.21, G:0.18, T:0.39
Consensus pattern (32 bp):
CATATTACTGGGCCGAAGCCTTTTTCATATCT
Found at i:76795123 original size:26 final size:26
Alignment explanation
Indices: 76795085--76795157 Score: 119
Period size: 26 Copynumber: 2.8 Consensus size: 26
76795075 CTCTTTTAAT
* *
76795085 AACTGGGGTATAAGCCCTTTTCGGTA
1 AACTAGGGCATAAGCCCTTTTCGGTA
76795111 AACTAGGGCATAAGCCCTTTTCGGTA
1 AACTAGGGCATAAGCCCTTTTCGGTA
*
76795137 AACTAGGGCATAAGCCTTTTT
1 AACTAGGGCATAAGCCCTTTT
76795158 ACACTTCCTT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 44 1.00
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
AACTAGGGCATAAGCCCTTTTCGGTA
Found at i:76795229 original size:9 final size:9
Alignment explanation
Indices: 76795215--76795271 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
76795205 ACATCATGTG
76795215 CATATCATA
1 CATATCATA
*
76795224 CATATCATGTG
1 CATATCA--TA
*
76795235 CATATCGTA
1 CATATCATA
*
76795244 CATATCATGTG
1 CATATCA--TA
76795255 CATATCATA
1 CATATCATA
76795264 CATATCAT
1 CATATCAT
76795272 GTGCATATCA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:76795232 original size:20 final size:20
Alignment explanation
Indices: 76795207--76795283 Score: 145
Period size: 20 Copynumber: 3.9 Consensus size: 20
76795197 TTATGAATAC
76795207 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
76795227 ATCATGTGCATATCGTACAT
1 ATCATGTGCATATCATACAT
76795247 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
76795267 ATCATGTGCATATCATA
1 ATCATGTGCATATCATA
76795284 TCAATATTGT
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 55 1.00
ACGTcount: A:0.34, C:0.19, G:0.12, T:0.35
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:76795238 original size:11 final size:11
Alignment explanation
Indices: 76795207--76795282 Score: 83
Period size: 11 Copynumber: 7.5 Consensus size: 11
76795197 TTATGAATAC
76795207 ATCATGTGCAT
1 ATCATGTGCAT
*
76795218 ATCA--TACAT
1 ATCATGTGCAT
76795227 ATCATGTGCAT
1 ATCATGTGCAT
*
76795238 ATC--GTACAT
1 ATCATGTGCAT
76795247 ATCATGTGCAT
1 ATCATGTGCAT
*
76795258 ATCA--TACAT
1 ATCATGTGCAT
76795267 ATCATGTGCAT
1 ATCATGTGCAT
76795278 ATCAT
1 ATCAT
76795283 ATCAATATTG
Statistics
Matches: 53, Mismatches: 6, Indels: 12
0.75 0.08 0.17
Matches are distributed among these distances:
9 24 0.45
11 29 0.55
ACGTcount: A:0.33, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:76800538 original size:48 final size:48
Alignment explanation
Indices: 76800465--76800573 Score: 148
Period size: 48 Copynumber: 2.3 Consensus size: 48
76800455 TGTGTGCTAA
* *
76800465 TGTAAGACCATGTCTAGGACGTGGCATCGACCACATTATGAGAGCCAG
1 TGTAAGACCATGTCTAGGACATGGCATCGACAACATTATGAGAGCCAG
* * **
76800513 TGTAAGACCATG-CTTGGAACATGGCATCTACAATGTTATGAGAGCCAG
1 TGTAAGACCATGTCTAGG-ACATGGCATCGACAACATTATGAGAGCCAG
76800561 TGTAAGACCATGT
1 TGTAAGACCATGT
76800574 TTTAATTCAA
Statistics
Matches: 53, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
47 4 0.08
48 49 0.92
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.24
Consensus pattern (48 bp):
TGTAAGACCATGTCTAGGACATGGCATCGACAACATTATGAGAGCCAG
Found at i:76804333 original size:42 final size:43
Alignment explanation
Indices: 76804223--76804335 Score: 115
Period size: 43 Copynumber: 2.7 Consensus size: 43
76804213 AACGAGTACA
* * ***
76804223 ATGCCGATGTCCCGGACGTGGTCTTACATGTAATTCAGTATCG
1 ATGCCGATGTCCCAGACATGGTCTTACAAAAAATTCAGTATCG
** *
76804266 ATGCCTTTGTCCCAGATA-GGATCTTACAAAAAATT-AGATAT-G
1 ATGCCGATGTCCCAGACATGG-TCTTACAAAAAATTCAG-TATCG
76804308 ATGCCGATGTCCCAGACATGGTCTTACA
1 ATGCCGATGTCCCAGACATGGTCTTACA
76804336 CGTAAATCTC
Statistics
Matches: 56, Mismatches: 11, Indels: 7
0.76 0.15 0.09
Matches are distributed among these distances:
42 27 0.48
43 29 0.52
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.29
Consensus pattern (43 bp):
ATGCCGATGTCCCAGACATGGTCTTACAAAAAATTCAGTATCG
Found at i:76811796 original size:39 final size:40
Alignment explanation
Indices: 76811753--76812010 Score: 308
Period size: 39 Copynumber: 6.7 Consensus size: 40
76811743 GCTCCTCGTT
* * *
76811753 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTA-ATCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTATCTCGCA
* * *
76811792 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
76811832 CAAATGCCTTCGGG-CTTA-CCCGGAATTAGTA-CTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
76811869 CAAATGCCTTCGGG-CTTA-CCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
76811907 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
76811946 CAAATGCCTTC-GGATCTTAGTCCGG-A-TATGTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAATTA-GT-ATC-TCGCA
76811986 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
76812011 CATCATTCAA
Statistics
Matches: 201, Mismatches: 7, Indels: 21
0.88 0.03 0.09
Matches are distributed among these distances:
37 37 0.18
38 40 0.20
39 82 0.41
40 42 0.21
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:76811873 original size:77 final size:79
Alignment explanation
Indices: 76811753--76812010 Score: 327
Period size: 77 Copynumber: 3.3 Consensus size: 79
76811743 GCTCCTCGTT
* * *
76811753 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAATCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTACTCGCACAAATGCCTTCGGGACTTAACCCGG
76811817 ATTTAGTAACTCGCA
65 ATTTAGTAACTCGCA
76811832 CAAATGCCTTCGGG-CTTA-CCCGGAATTAGTACTCGCACAAATGCCTTCGGG-CTT-ACCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTACTCGCACAAATGCCTTCGGGACTTAACCCGGA
* *
76811893 ATTAGTATCTCGCA
66 TTTAGTAACTCGCA
**
76811907 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTA-CTCGCACAAATGCCTTCGGGA-CTTAACCCG
* * *
76811970 GATAT-GTCACTTAGCA
64 GATTTAGTAAC-TCGCA
76811986 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
76812011 CATCATTCAA
Statistics
Matches: 159, Mismatches: 12, Indels: 16
0.85 0.06 0.09
Matches are distributed among these distances:
75 37 0.23
76 18 0.11
77 46 0.29
78 19 0.12
79 39 0.25
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTACTCGCACAAATGCCTTCGGGACTTAACCCGGA
TTTAGTAACTCGCA
Found at i:76822429 original size:27 final size:26
Alignment explanation
Indices: 76822399--76822484 Score: 82
Period size: 27 Copynumber: 3.2 Consensus size: 26
76822389 AGAGGAAGTG
*
76822399 TTCTGGTGGCTATGCCACAAATATCTA
1 TTCTGGTGGCTATACCAC-AATATCTA
* *
76822426 TTCTGGTGGCTCTACCACAATATCTG
1 TTCTGGTGGCTATACCACAATATCTA
* * * * *
76822452 TATCTAGTGACTCTATCACAATATCTG
1 T-TCTGGTGGCTATACCACAATATCTA
76822479 TTCTGG
1 TTCTGG
76822485 CAGCCATGCT
Statistics
Matches: 51, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
26 12 0.24
27 39 0.76
ACGTcount: A:0.23, C:0.23, G:0.17, T:0.36
Consensus pattern (26 bp):
TTCTGGTGGCTATACCACAATATCTA
Found at i:76835910 original size:65 final size:70
Alignment explanation
Indices: 76835796--76835923 Score: 203
Period size: 65 Copynumber: 1.9 Consensus size: 70
76835786 GGACTAAGAT
*
76835796 CCGAAGGCATTTGTGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAATT
1 CCGAAGGCATTTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAATT
76835861 CTAAG
66 CTAAG
*
76835866 CCGAAGGCATTTGCGAG-TACTAA-TCCGGG-T-AG-CCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAA
76835924 ATCCGGGTTA
Statistics
Matches: 56, Mismatches: 2, Indels: 5
0.89 0.03 0.08
Matches are distributed among these distances:
65 25 0.45
66 2 0.04
67 1 0.02
68 6 0.11
69 6 0.11
70 16 0.29
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.25
Consensus pattern (70 bp):
CCGAAGGCATTTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAATT
CTAAG
Done.