Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 233 of 349
Found at i:76835946 original size:40 final size:39
Alignment explanation
Indices: 76835744--76835990 Score: 192
Period size: 40 Copynumber: 6.6 Consensus size: 39
76835734 TTGAATGATG
* * *
76835744 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-ATA
1 TCCGGG-TAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
76835783 TCCGGACTAAGAT-CCGAAGGCATTTGT--GAGATACTAAT
1 TCCGG-GTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
76835821 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACT-AA
1 TCCGGG-TAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
76835859 TTC---TAAG--CCGAAGGCA-TT-TGCGAG-TACT-AA
1 TCCGGGTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
76835889 TCCGGGT-AG--CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
76835925 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAA
1 TCCGGG-TAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
76835966 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGG-TAAGTCCCGAAGGCATTTG
76835991 AACGAGGAGC
Statistics
Matches: 175, Mismatches: 13, Indels: 39
0.77 0.06 0.17
Matches are distributed among these distances:
30 8 0.05
31 6 0.03
32 13 0.07
33 12 0.07
34 10 0.06
35 4 0.02
36 8 0.05
37 19 0.11
38 15 0.09
39 25 0.14
40 53 0.30
41 2 0.01
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (39 bp):
TCCGGGTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:76865836 original size:27 final size:26
Alignment explanation
Indices: 76865774--76865861 Score: 104
Period size: 27 Copynumber: 3.3 Consensus size: 26
76865764 ATGGAGGAAG
*
76865774 TGTTCTGGTGGCTATGCCACAAATATC
1 TGTTCTGGTGGCTCTGCCAC-AATATC
* *
76865801 TATTATGGTGGCTCTGCCACAATATC
1 TGTTCTGGTGGCTCTGCCACAATATC
* **
76865827 TGTATCTGGTGACTCTATCACAATATC
1 TGT-TCTGGTGGCTCTGCCACAATATC
76865854 TGTTCTGG
1 TGTTCTGG
76865862 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 8, Indels: 3
0.83 0.13 0.05
Matches are distributed among these distances:
26 13 0.25
27 39 0.75
ACGTcount: A:0.22, C:0.22, G:0.20, T:0.36
Consensus pattern (26 bp):
TGTTCTGGTGGCTCTGCCACAATATC
Found at i:76867426 original size:27 final size:27
Alignment explanation
Indices: 76867363--76867419 Score: 114
Period size: 27 Copynumber: 2.1 Consensus size: 27
76867353 GCTTTTACCT
76867363 ACTGATAGATCAAGCATCTAGAAACAA
1 ACTGATAGATCAAGCATCTAGAAACAA
76867390 ACTGATAGATCAAGCATCTAGAAACAA
1 ACTGATAGATCAAGCATCTAGAAACAA
76867417 ACT
1 ACT
76867420 CTAAGATATC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.47, C:0.19, G:0.14, T:0.19
Consensus pattern (27 bp):
ACTGATAGATCAAGCATCTAGAAACAA
Found at i:76870123 original size:27 final size:27
Alignment explanation
Indices: 76869981--76870165 Score: 176
Period size: 27 Copynumber: 6.9 Consensus size: 27
76869971 AGTGGATAAG
*
76869981 TTGTAAAATTACCAAAATACCC-CTAGT
1 TTGTAAAATTACCAAAATACCCTCGA-T
76870008 TTGTAAAATTACCAAAATACCC-CTGAT
1 TTGTAAAATTACCAAAATACCCTC-GAT
* * *
76870035 TTGTGAAATTACTAAAATACCCTCGAC
1 TTGTAAAATTACCAAAATACCCTCGAT
* ** *
76870062 CTGTAAAATTACTGAAATACCCTCGAC
1 TTGTAAAATTACCAAAATACCCTCGAT
*
76870089 TTGTAAAATTACCAAAGTACCCTCGAT
1 TTGTAAAATTACCAAAATACCCTCGAT
** * ***
76870116 TTACAAAATTATCATTTTACCCTCGAT
1 TTGTAAAATTACCAAAATACCCTCGAT
** *
76870143 TTACAAAATTACAAAAATACCCT
1 TTGTAAAATTACCAAAATACCCT
76870166 TGTAAGGCAG
Statistics
Matches: 133, Mismatches: 23, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
27 131 0.98
28 2 0.02
ACGTcount: A:0.39, C:0.23, G:0.08, T:0.30
Consensus pattern (27 bp):
TTGTAAAATTACCAAAATACCCTCGAT
Found at i:76877476 original size:51 final size:51
Alignment explanation
Indices: 76877414--76877567 Score: 281
Period size: 51 Copynumber: 3.0 Consensus size: 51
76877404 GCCAAGAGAG
76877414 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
76877465 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
* * *
76877516 TGTATATATGTAATAAGGTCTAATAGCCGATGTGATGAATGTGAAAGTGTA
1 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
76877567 T
1 T
76877568 ATATGTGACA
Statistics
Matches: 100, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
51 100 1.00
ACGTcount: A:0.32, C:0.07, G:0.28, T:0.32
Consensus pattern (51 bp):
TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
Found at i:76877801 original size:37 final size:37
Alignment explanation
Indices: 76877745--76877823 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
76877735 CCGAGCTCTA
* * * *
76877745 AAGATCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
76877782 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
76877819 AAGAC
1 AAGAC
76877824 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.24, C:0.18, G:0.32, T:0.27
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:76898387 original size:40 final size:40
Alignment explanation
Indices: 76898341--76898565 Score: 272
Period size: 40 Copynumber: 5.6 Consensus size: 40
76898331 CTTGCGCAAG
* * *
76898341 GCCTTCGGGTCTTAGCCCGGATGTGGTCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
76898381 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * *
76898421 GCCTTCGGGTTTTAGCCCGGATATAATCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * *
76898461 GCCTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACGAAC
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAAT
* * * * *
76898501 GCCTTCAGATCTTAGTCCGGTTATAGTCACCTAGCACAAAA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCA-CTAGCACAAAT
*
76898542 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
76898566 CATTCGAATA
Statistics
Matches: 156, Mismatches: 26, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
39 1 0.01
40 127 0.81
41 28 0.18
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:76898436 original size:80 final size:80
Alignment explanation
Indices: 76898305--76898565 Score: 285
Period size: 80 Copynumber: 3.3 Consensus size: 80
76898295 CTCAAGTAAT
* * * * * * * *
76898305 CTTCGGGATTTAG-CCGGATATAACTACTTGCGC-AAGGCCTTCGGGTCTTAGCCCGGATGTGGT
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAACGCCTTCGGGTCTTAGCCCGGATATAGT
*
76898368 CACTAGCATAAATGC
66 CACTAGCACAAATGC
* * * *
76898383 CTTCGGGACTTAGCCCGGATATAGTC-GCTAGCACAAATGCCTTCGGGTTTTAGCCCGGATATAA
1 CTTCGGGACTTAGCCCGGATATAG-CAACTAGCACAAACGCCTTCGGGTCTTAGCCCGGATATAG
*
76898447 TCGCTAGCACAAATGC
65 TCACTAGCACAAATGC
* * * * * * *
76898463 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACGAACGCCTTCAGATCTTAGTCCGGTTATAGT
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAACGCCTTCGGGTCTTAGCCCGGATATAGT
*
76898528 CACCTAGCACAAAAGC
66 CA-CTAGCACAAATGC
76898544 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
76898566 CATTCGAATA
Statistics
Matches: 152, Mismatches: 26, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
78 12 0.08
79 15 0.10
80 92 0.61
81 33 0.22
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAACGCCTTCGGGTCTTAGCCCGGATATAGT
CACTAGCACAAATGC
Found at i:76904852 original size:42 final size:42
Alignment explanation
Indices: 76904789--76905215 Score: 469
Period size: 42 Copynumber: 10.2 Consensus size: 42
76904779 ATATACAATA
* * *
76904789 CAATGAAAAGTAAATGGACCTCAACACTTGCGCCTTTAAATG
1 CAATGAAAAGTAAATGGACCTCCACACTTGGGCCTCTAAATG
* **
76904831 CAATGAAAAATAAATTAACCTCCACACTTGGGCCTCTAAATG
1 CAATGAAAAGTAAATGGACCTCCACACTTGGGCCTCTAAATG
* ** * * *
76904873 CAACGAAAAGTAAATGGACCTATACACCTAGGTCTCTAAATG
1 CAATGAAAAGTAAATGGACCTCCACACTTGGGCCTCTAAATG
* * * * *
76904915 CAATGAAAAGTGAATGGACTTCTACACCTGGGTCTCTAAATG
1 CAATGAAAAGTAAATGGACCTCCACACTTGGGCCTCTAAATG
* * * * *
76904957 GAATGAAAAGTGAATGGACCTCCACACCTGGGCCTTTACATG
1 CAATGAAAAGTAAATGGACCTCCACACTTGGGCCTCTAAATG
* *
76904999 CAATGAAAAATAAATGGACCTCCA-AGCTTGGGCCCCTAAATG
1 CAATGAAAAGTAAATGGACCTCCACA-CTTGGGCCTCTAAATG
* * * * *
76905041 CAATGAAAAGTGAATTGACTTCCACACCTGGGTCTCTAAATG
1 CAATGAAAAGTAAATGGACCTCCACACTTGGGCCTCTAAATG
* * * * *
76905083 TAATGAAAAGTGAATGGACCTCCACACCTAGGCCTCTGAATG
1 CAATGAAAAGTAAATGGACCTCCACACTTGGGCCTCTAAATG
* * *
76905125 CAATGAAAAGTAAATGAACCTCCACACTTGGTCCTCTTAATG
1 CAATGAAAAGTAAATGGACCTCCACACTTGGGCCTCTAAATG
* * * *
76905167 CAATGAAAAGTGAATGAACCTCCACACCTGAGCCTCTAAATG
1 CAATGAAAAGTAAATGGACCTCCACACTTGGGCCTCTAAATG
76905209 CAATGAA
1 CAATGAA
76905216 TGCTTTCCTT
Statistics
Matches: 325, Mismatches: 58, Indels: 4
0.84 0.15 0.01
Matches are distributed among these distances:
41 1 0.00
42 323 0.99
43 1 0.00
ACGTcount: A:0.37, C:0.23, G:0.18, T:0.23
Consensus pattern (42 bp):
CAATGAAAAGTAAATGGACCTCCACACTTGGGCCTCTAAATG
Found at i:76923262 original size:41 final size:41
Alignment explanation
Indices: 76923194--76923316 Score: 149
Period size: 41 Copynumber: 3.0 Consensus size: 41
76923184 TAAAAGCCAC
* * * * *
76923194 CGGCGGATCCATGATCGTTAAGCAACCATGTGATCCTTAAT
1 CGGCAGATCCACGATCGTCAAGAAACCATGCGATCCTTAAT
** *
76923235 CGGTGGATCCACGGA-CGTCAAGAAACCATGCGATCCTCAAT
1 CGGCAGATCCAC-GATCGTCAAGAAACCATGCGATCCTTAAT
*
76923276 CGGCAGATCCACGATCGTCAAGCAACCATGCGATCCTTAAT
1 CGGCAGATCCACGATCGTCAAGAAACCATGCGATCCTTAAT
76923317 TTCTTCCTTC
Statistics
Matches: 70, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
40 2 0.03
41 66 0.94
42 2 0.03
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.21
Consensus pattern (41 bp):
CGGCAGATCCACGATCGTCAAGAAACCATGCGATCCTTAAT
Found at i:76923610 original size:27 final size:27
Alignment explanation
Indices: 76923581--76923916 Score: 173
Period size: 27 Copynumber: 12.4 Consensus size: 27
76923571 ATCTACAAGC
* * *
76923581 CAAGGGTATTTCGATAATTTTGCAAAC
1 CAAGGGTATTTTGATAATTTTACAAAT
* **
76923608 CAATGGTATTTTTG-TAATTTTTGAAAGT
1 CAAGGGTA-TTTTGATAATTTTACAAA-T
*
76923636 CAAGGGTATTTTTG-TAATTTT-CTGAAT
1 CAAGGGTA-TTTTGATAATTTTAC-AAAT
* * * *
76923663 TAAAGGTATTTCGATAATTTTCCAAAT
1 CAAGGGTATTTTGATAATTTTACAAAT
* * *
76923690 TAGGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTTGATAATTTTACAAAT
** * **
76923717 TGAGGGTATTTTGGTAATTTTACATGT
1 CAAGGGTATTTTGATAATTTTACAAAT
* **
76923744 -AGAGGGTATTTCGATAATTTTACAGGT
1 CA-AGGGTATTTTGATAATTTTACAAAT
* * * *
76923771 CGAGGGTA-TCTCAGTAATTTCACAAAT
1 CAAGGGTATTTTGA-TAATTTTACAAAT
* *
76923798 CATA-GGTATTTTGGTAATTTTACAAAC
1 CA-AGGGTATTTTGATAATTTTACAAAT
* * * *
76923825 CAGGGGTATTTTGGTAATTTTGCTAAT
1 CAAGGGTATTTTGATAATTTTACAAAT
* * ** *
76923852 CGAGGGTATTTTGTTAATTTTTGTAAAC
1 CAAGGGTATTTTGATAA-TTTTACAAAT
* * ** *
76923880 CAATGGTATTTAG-TAATTTTGTAAAC
1 CAAGGGTATTTTGATAATTTTACAAAT
76923906 CAAGGGTATTT
1 CAAGGGTATTT
76923917 CAGTAATTCT
Statistics
Matches: 245, Mismatches: 52, Indels: 25
0.76 0.16 0.08
Matches are distributed among these distances:
26 26 0.11
27 172 0.70
28 47 0.19
ACGTcount: A:0.29, C:0.09, G:0.20, T:0.42
Consensus pattern (27 bp):
CAAGGGTATTTTGATAATTTTACAAAT
Found at i:76923674 original size:82 final size:81
Alignment explanation
Indices: 76923585--76923818 Score: 206
Period size: 81 Copynumber: 2.9 Consensus size: 81
76923575 ACAAGCCAAG
* * * ** *
76923585 GGTATTTCGATAATTTTGCAAACCAATGGTATTTTTGTAATTTTTGAAAGTCAAGGGTATTTTTG
1 GGTATTTCGATAATTTTCCAAACCAAGGGTATTTTGGTAATTTTACAAA-TCAAGGGTATTTTGG
76923650 TAATTTTCTGAATTAAA
65 TAATTTTCTGAATTAAA
** * **
76923667 GGTATTTCGATAATTTTCCAAATTAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTTGGT
1 GGTATTTCGATAATTTTCCAAACCAAGGGTATTTTGGTAATTTTACAAATCAAGGGTATTTTGGT
*
76923732 AA-TTT-T-ACATGTAGAG
66 AATTTTCTGA-AT-TA-AA
* *** * * ** *
76923748 GGTATTTCGATAATTTTACAGGTCGAGGGTATCTCAGTAATTTCACAAATCATA-GGTATTTTGG
1 GGTATTTCGATAATTTTCCAAACCAAGGGTATTTTGGTAATTTTACAAATCA-AGGGTATTTTGG
76923812 TAATTTT
65 TAATTTT
76923819 ACAAACCAGG
Statistics
Matches: 123, Mismatches: 24, Indels: 10
0.78 0.15 0.06
Matches are distributed among these distances:
78 1 0.01
79 3 0.02
80 5 0.04
81 69 0.56
82 45 0.37
ACGTcount: A:0.29, C:0.08, G:0.20, T:0.43
Consensus pattern (81 bp):
GGTATTTCGATAATTTTCCAAACCAAGGGTATTTTGGTAATTTTACAAATCAAGGGTATTTTGGT
AATTTTCTGAATTAAA
Found at i:76923975 original size:27 final size:27
Alignment explanation
Indices: 76923909--76923989 Score: 92
Period size: 27 Copynumber: 3.0 Consensus size: 27
76923899 TGTAAACCAA
76923909 GGGTATTTCAGTAATTCTACCCTACAG
1 GGGTATTTCAGTAATTCTACCCTACAG
* * * *
76923936 GAGCA-TTCGAGTAATTCTATCCTATAG
1 GGGTATTTC-AGTAATTCTACCCTACAG
* *
76923963 GGGTATTTCAGTAATACTAGCCTACAG
1 GGGTATTTCAGTAATTCTACCCTACAG
76923990 ATATGAGATT
Statistics
Matches: 43, Mismatches: 9, Indels: 4
0.77 0.16 0.07
Matches are distributed among these distances:
26 3 0.07
27 37 0.86
28 3 0.07
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.32
Consensus pattern (27 bp):
GGGTATTTCAGTAATTCTACCCTACAG
Found at i:76931798 original size:127 final size:128
Alignment explanation
Indices: 76931572--76931831 Score: 441
Period size: 127 Copynumber: 2.0 Consensus size: 128
76931562 AGTAATTCGG
*
76931572 ATATGACCTACGTTCTTTGCTAAGTTTGAAACATATGTATTTAATAGTATATATGTTCAGTTACC
1 ATATGACCTACGTTCTTTGCTAAGTATGAAACATATGTATTTAATAGTATATATGTTCAGTTACC
* * *
76931637 ATGACAAAGCATTTCTTTAAGTCATAAATGATAGTTTCATAAATGAACCATTACATGGTGTT-
66 ATGACAAACCATTTCTTTAAGTCATAAAAGATAGTTTCAAAAATGAACCATTACATGGTGTTA
* **
76931699 ATATGACCTACGTTCTTTGCTAAGTATGAAACATATGTATTTAGTAGTATATATGTTTGGTTACC
1 ATATGACCTACGTTCTTTGCTAAGTATGAAACATATGTATTTAATAGTATATATGTTCAGTTACC
*
76931764 ATGACAAACCATTTCTTTAAGTTATAAAAGATAGTTTCAAAAATGAACCATTACATGGTGTTA
66 ATGACAAACCATTTCTTTAAGTCATAAAAGATAGTTTCAAAAATGAACCATTACATGGTGTTA
76931827 ATATG
1 ATATG
76931832 CATAAATAAA
Statistics
Matches: 124, Mismatches: 8, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
127 119 0.96
128 5 0.04
ACGTcount: A:0.35, C:0.13, G:0.15, T:0.38
Consensus pattern (128 bp):
ATATGACCTACGTTCTTTGCTAAGTATGAAACATATGTATTTAATAGTATATATGTTCAGTTACC
ATGACAAACCATTTCTTTAAGTCATAAAAGATAGTTTCAAAAATGAACCATTACATGGTGTTA
Found at i:76936080 original size:47 final size:47
Alignment explanation
Indices: 76936002--76936157 Score: 231
Period size: 47 Copynumber: 3.3 Consensus size: 47
76935992 CCCTTCGGGA
* * * * * *
76936002 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
76936049 CCTGTCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
76936096 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
76936143 CTTATCACATATATA
1 CTTATCACATATATA
76936158 TACACTCACA
Statistics
Matches: 97, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 97 1.00
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:76940999 original size:25 final size:25
Alignment explanation
Indices: 76940954--76941024 Score: 115
Period size: 25 Copynumber: 2.8 Consensus size: 25
76940944 GAGGAAGTGC
*
76940954 AAAAGGGCTTATGCCCCAGTTTACTG
1 AAAAGGGCTT-TGCCCCAGTTTACCG
*
76940980 AAAAGGGCTTTGCCCAAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
76941005 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
76941025 ATTAAAGAGG
Statistics
Matches: 42, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
25 32 0.76
26 10 0.24
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.25
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCG
Found at i:76943938 original size:15 final size:15
Alignment explanation
Indices: 76943911--76943954 Score: 54
Period size: 14 Copynumber: 2.9 Consensus size: 15
76943901 TATAGTATCA
76943911 TATCTTGGGATTTCTC
1 TATCTT-GGATTTCTC
*
76943927 TATCTTGGATTTCTT
1 TATCTTGGATTTCTC
*
76943942 TA-CTTGGTTTTCT
1 TATCTTGGATTTCT
76943955 TGTTATCTCT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
14 10 0.38
15 10 0.38
16 6 0.23
ACGTcount: A:0.11, C:0.16, G:0.16, T:0.57
Consensus pattern (15 bp):
TATCTTGGATTTCTC
Found at i:76946682 original size:50 final size:49
Alignment explanation
Indices: 76946602--76946742 Score: 178
Period size: 50 Copynumber: 2.8 Consensus size: 49
76946592 CGATTCTAGG
* *
76946602 GATATATGAGAGCTAGAGTAAGAACATGTCTCGAACATGGCATCGGCAC-C
1 GATATATGAGAGCTAGTGTAAGACCATGTCT-GAACATGGCATCGGC-CTC
* *
76946652 GATAGATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTC
1 GATATATGAGAGCTAGTGTAAGACCATGTCT-GAACATGGCATCGGCCTC
*
76946702 GATATACGAGAG-TCAGTGTAAGACCATGTCTGAGACATGGC
1 GATATATGAGAGCT-AGTGTAAGACCATGTCTGA-ACATGGC
76946743 GTCGACTTTG
Statistics
Matches: 80, Mismatches: 8, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
49 3 0.04
50 77 0.96
ACGTcount: A:0.30, C:0.19, G:0.29, T:0.21
Consensus pattern (49 bp):
GATATATGAGAGCTAGTGTAAGACCATGTCTGAACATGGCATCGGCCTC
Found at i:76951166 original size:22 final size:22
Alignment explanation
Indices: 76951139--76951184 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
76951129 GGGTGTGTGA
76951139 CTCTCTTTTGATGAAAAATTCT
1 CTCTCTTTTGATGAAAAATTCT
76951161 CTCTCTTTTGATGAAAAATTCT
1 CTCTCTTTTGATGAAAAATTCT
76951183 CT
1 CT
76951185 AAGTGTCGTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.26, C:0.20, G:0.09, T:0.46
Consensus pattern (22 bp):
CTCTCTTTTGATGAAAAATTCT
Found at i:76954583 original size:3 final size:3
Alignment explanation
Indices: 76954575--76954606 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
76954565 ATTCGATCCT
76954575 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
76954607 TTAAAGATTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:76954699 original size:24 final size:24
Alignment explanation
Indices: 76954672--76954726 Score: 92
Period size: 24 Copynumber: 2.3 Consensus size: 24
76954662 ATTGGGTTTG
*
76954672 TGATTTATCTGACTTTAAAATTCT
1 TGATTCATCTGACTTTAAAATTCT
*
76954696 TGATTCATCTTACTTTAAAATTCT
1 TGATTCATCTGACTTTAAAATTCT
76954720 TGATTCA
1 TGATTCA
76954727 ATGTTTAAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.29, C:0.15, G:0.07, T:0.49
Consensus pattern (24 bp):
TGATTCATCTGACTTTAAAATTCT
Found at i:76960063 original size:165 final size:165
Alignment explanation
Indices: 76959791--76960106 Score: 470
Period size: 165 Copynumber: 1.9 Consensus size: 165
76959781 CCCAAAAGTG
*
76959791 TAGCACATAGCTAACACTCTCCAACACACCAACATATCTCAGTGAATAAAGCTTAGCTAACATTC
1 TAGCACATAGCTAACACTCTCCAACACACCAACATATCCCAGTGAATAAAGCTTAGCTAACATTC
* * * * *
76959856 CCTTATCTCTTCAAATTGTCTCAAGGCCTGGATGCCCAAATCACAAAACACAAGGGCGAGGACTC
66 CCTTATCTCTCCAAACTGTCCCAAGGCCTGAATGCCCAAATCACAAAACACAAGGACGAGGACTC
76959921 ACAATCCTATGGCATGCCAACAATATCCAACGATT
131 ACAATCCTATGGCATGCCAACAATATCCAACGATT
* * * * ** *
76959956 TAGCACATAGTTAACACTCTCCAACATACCAATATATCCCTGTGAATGGAGCTTAGCTCACATTC
1 TAGCACATAGCTAACACTCTCCAACACACCAACATATCCCAGTGAATAAAGCTTAGCTAACATTC
** * *
76960021 CCTTATCTCTCCAAACTGTCCCGGGGCCTGAATGCCCAAATCACAAGACACAAGGATGAGGACTC
66 CCTTATCTCTCCAAACTGTCCCAAGGCCTGAATGCCCAAATCACAAAACACAAGGACGAGGACTC
*
76960086 ACAATTCTATGGCATGCCAAC
131 ACAATCCTATGGCATGCCAAC
76960107 TATAACTAAC
Statistics
Matches: 133, Mismatches: 18, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
165 133 1.00
ACGTcount: A:0.33, C:0.29, G:0.15, T:0.23
Consensus pattern (165 bp):
TAGCACATAGCTAACACTCTCCAACACACCAACATATCCCAGTGAATAAAGCTTAGCTAACATTC
CCTTATCTCTCCAAACTGTCCCAAGGCCTGAATGCCCAAATCACAAAACACAAGGACGAGGACTC
ACAATCCTATGGCATGCCAACAATATCCAACGATT
Found at i:76966270 original size:10 final size:9
Alignment explanation
Indices: 76966248--76966272 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
76966238 CAACGGTCTC
76966248 AAAAACATT
1 AAAAACATT
76966257 AAAAACATT
1 AAAAACATT
76966266 AAAAACA
1 AAAAACA
76966273 GGGTAAAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.72, C:0.12, G:0.00, T:0.16
Consensus pattern (9 bp):
AAAAACATT
Found at i:76970849 original size:27 final size:27
Alignment explanation
Indices: 76970819--76970996 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
76970809 ATATTGAGTC
* * * *
76970819 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
76970846 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
76970873 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
76970901 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
76970928 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
76970955 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
76970982 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
76970997 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:76970958 original size:82 final size:81
Alignment explanation
Indices: 76970840--76970995 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
76970830 TGCTATATAA
* *
76970840 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
76970905 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
76970922 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
76970986 CACTTAGTGC
65 CACTTAGTGC
76970996 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:76974680 original size:108 final size:107
Alignment explanation
Indices: 76974538--76975074 Score: 738
Period size: 108 Copynumber: 5.0 Consensus size: 107
76974528 GTACTCTCGA
* * *
76974538 TTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTATCGTTTTACCCTCGATTTTTAAAATT
1 TTTACAGAATTACCATTTTACCCTCGATTTACAGAATTA-CGTTTTACCCTCAATTTATAAAATT
* * **
76974603 ACCATTTTACCCTCAATTTACAGAATTACCATTTTACCCTCAG
65 ACTATTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCAG
* *
76974646 TTTACAGAATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAATTTGTAAAATT
1 TTTACAGAATTACCATTTTACCCTCGATTTACAGAATTA-CGTTTTACCCTCAATTTATAAAATT
* * * *
76974711 ACTGTTTTACCCTCGATTTATAGAATTACCGTTTTACCCTTAG
65 ACTATTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCAG
*
76974754 TTTACAGAATTACCATTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCAATTTGTAAAATT
1 TTTACAGAATTACCATTTTACCCTCGATTTACAGAATTAC-GTTTTACCCTCAATTTATAAAATT
*
76974819 ACTATTTTACCCTCGATTTACAGAATTACTGTTTTACCATCAG
65 ACTATTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCAG
* * *
76974862 TTTACAGAATTACCATTTTACCCTCGATTTACAGAATTATCATTTTACCCTCAGTTTATAGAATT
1 TTTACAGAATTACCATTTTACCCTCGATTTACAGAATTA-CGTTTTACCCTCAATTTATAAAATT
*
76974927 ACTATTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCGAT
65 ACTATTTTACCCTCGATTTACAGAATTACTGTTTTACCCTC-AG
* * * *** *
76974971 TTGTA-A-AATTACTATTTTACCCTCGATTTATAGAATTACTGGTTTACCCTTGGTTTACAAAAT
1 TT-TACAGAATTACCATTTTACCCTCGATTTACAGAATTAC-GTTTTACCCTCAATTTATAAAAT
*
76975034 TA-TCGTTTTACCCTCGATTTACAGAATTACTGTTTTACCCT
64 TACT-ATTTTACCCTCGATTTACAGAATTACTGTTTTACCCT
76975075 TAATTGTGAA
Statistics
Matches: 391, Mismatches: 32, Indels: 12
0.90 0.07 0.03
Matches are distributed among these distances:
107 3 0.01
108 381 0.97
109 5 0.01
110 2 0.01
ACGTcount: A:0.28, C:0.22, G:0.09, T:0.41
Consensus pattern (107 bp):
TTTACAGAATTACCATTTTACCCTCGATTTACAGAATTACGTTTTACCCTCAATTTATAAAATTA
CTATTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCAG
Found at i:76974956 original size:27 final size:27
Alignment explanation
Indices: 76974533--76975074 Score: 612
Period size: 27 Copynumber: 20.1 Consensus size: 27
76974523 CCAAAGTACT
*
76974533 CTCGATTTACAGAATTACCGTTTTACC
1 CTCGATTTACAGAATTACTGTTTTACC
76974560 CTCGATTTACAGAATTA-TCGTTTTACC
1 CTCGATTTACAGAATTACT-GTTTTACC
** * **
76974587 CTCGATTTTTAAAATTACCATTTTACC
1 CTCGATTTACAGAATTACTGTTTTACC
* **
76974614 CTCAATTTACAGAATTACCATTTTACC
1 CTCGATTTACAGAATTACTGTTTTACC
*
76974641 CTC-AGTTTACAGAATTACTATTTTACC
1 CTCGA-TTTACAGAATTACTGTTTTACC
*
76974668 CTCGATTTACAGAATTACCGTTTTACC
1 CTCGATTTACAGAATTACTGTTTTACC
* ** *
76974695 CTCAATTTGTAAAATTACTGTTTTACC
1 CTCGATTTACAGAATTACTGTTTTACC
* *
76974722 CTCGATTTATAGAATTACCGTTTTACC
1 CTCGATTTACAGAATTACTGTTTTACC
* **
76974749 CT-TAGTTTACAGAATTACCATTTTACC
1 CTCGA-TTTACAGAATTACTGTTTTACC
76974776 CTCGATTTACAGAATTACTGTTTTACC
1 CTCGATTTACAGAATTACTGTTTTACC
* ** * *
76974803 CTCAATTTGTAAAATTACTATTTTACC
1 CTCGATTTACAGAATTACTGTTTTACC
76974830 CTCGATTTACAGAATTACTGTTTTACC
1 CTCGATTTACAGAATTACTGTTTTACC
* **
76974857 ATC-AGTTTACAGAATTACCATTTTACC
1 CTCGA-TTTACAGAATTACTGTTTTACC
*
76974884 CTCGATTTACAGAATTA-TCATTTTACC
1 CTCGATTTACAGAATTACT-GTTTTACC
* *
76974911 CTC-AGTTTATAGAATTACTATTTTACC
1 CTCGA-TTTACAGAATTACTGTTTTACC
76974938 CTCGATTTACAGAATTACTGTTTTACC
1 CTCGATTTACAGAATTACTGTTTTACC
** * *
76974965 CTCGATTTGTAAAATTACTATTTTACC
1 CTCGATTTACAGAATTACTGTTTTACC
* *
76974992 CTCGATTTATAGAATTACTGGTTTACC
1 CTCGATTTACAGAATTACTGTTTTACC
* * *
76975019 CTTGGTTTACAAAATTA-TCGTTTTACC
1 CTCGATTTACAGAATTACT-GTTTTACC
76975046 CTCGATTTACAGAATTACTGTTTTACC
1 CTCGATTTACAGAATTACTGTTTTACC
76975073 CT
1 CT
76975075 TAATTGTGAA
Statistics
Matches: 439, Mismatches: 62, Indels: 28
0.83 0.12 0.05
Matches are distributed among these distances:
26 5 0.01
27 428 0.97
28 6 0.01
ACGTcount: A:0.28, C:0.22, G:0.09, T:0.41
Consensus pattern (27 bp):
CTCGATTTACAGAATTACTGTTTTACC
Found at i:76975279 original size:27 final size:27
Alignment explanation
Indices: 76975092--76975279 Score: 216
Period size: 27 Copynumber: 7.0 Consensus size: 27
76975082 GAAATTACTA
76975092 AAATA-CCTCTGTAGGGTAGAATTACCG
1 AAATACCCT-TGTAGGGTAGAATTACCG
* * **
76975119 AAATACCCCTATAGGGTAGAATTACTA
1 AAATACCCTTGTAGGGTAGAATTACCG
* *
76975146 AAATACCCTTATAGGGTAGAATTATCG
1 AAATACCCTTGTAGGGTAGAATTACCG
* *
76975173 AAATACCCTCGTAGGGTAGAATTATCG
1 AAATACCCTTGTAGGGTAGAATTACCG
* * *
76975200 AAATACCCTTGTAGGCTAAAAATACCG
1 AAATACCCTTGTAGGGTAGAATTACCG
*
76975227 AAATACCCCTGTAGGGTAGAATTACCG
1 AAATACCCTTGTAGGGTAGAATTACCG
* * * *
76975254 AGATACCTTTGTGGGGTAAAATTACC
1 AAATACCCTTGTAGGGTAGAATTACC
76975280 ATTTTGCCCC
Statistics
Matches: 136, Mismatches: 24, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
27 134 0.99
28 2 0.01
ACGTcount: A:0.36, C:0.19, G:0.20, T:0.26
Consensus pattern (27 bp):
AAATACCCTTGTAGGGTAGAATTACCG
Found at i:76975558 original size:27 final size:26
Alignment explanation
Indices: 76975478--76975560 Score: 112
Period size: 27 Copynumber: 3.1 Consensus size: 26
76975468 CGGAGGAAGC
*
76975478 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTCTGCCAC-AATATCT
*
76975505 ATTCTGGTGGCTCTGCCACAATATCT
1 GTTCTGGTGGCTCTGCCACAATATCT
* *
76975531 GTATCTGGTGACTCTGTCACAATATCT
1 GT-TCTGGTGGCTCTGCCACAATATCT
76975558 GTT
1 GTT
76975561 GACCGATCGA
Statistics
Matches: 50, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
26 9 0.18
27 41 0.82
ACGTcount: A:0.20, C:0.23, G:0.20, T:0.36
Consensus pattern (26 bp):
GTTCTGGTGGCTCTGCCACAATATCT
Found at i:76976098 original size:6 final size:6
Alignment explanation
Indices: 76976087--76976193 Score: 116
Period size: 6 Copynumber: 17.8 Consensus size: 6
76976077 CTGTCACCAA
*
76976087 ATTCTG ATTCTG ATTCTG ATTCTG -TTACTA ATAT-TG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG AT-TCTG ATTCTG ATTCTG
*
76976135 ATTCTG -TTACTA ATAT-TG ATTCTG ATTCTG ATTCTG -TTACTG ATTCTG
1 ATTCTG ATT-CTG AT-TCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG
76976183 ATTCTG ATTCT
1 ATTCTG ATTCT
76976194 CATTTTGGTT
Statistics
Matches: 87, Mismatches: 4, Indels: 20
0.78 0.04 0.18
Matches are distributed among these distances:
5 8 0.09
6 73 0.84
7 4 0.05
8 2 0.02
ACGTcount: A:0.21, C:0.15, G:0.14, T:0.50
Consensus pattern (6 bp):
ATTCTG
Found at i:76976127 original size:30 final size:31
Alignment explanation
Indices: 76976062--76976193 Score: 191
Period size: 30 Copynumber: 4.4 Consensus size: 31
76976052 TTGCATTCAC
* * *
76976062 ATTCTGATTCTGATCCTGTCACCAA-ATTCTG
1 ATTCTGATTCTGATTCTGTTACTAATA-TCTG
76976093 ATTCTGATTCTGATTCTGTTACTAATAT-TG
1 ATTCTGATTCTGATTCTGTTACTAATATCTG
76976123 ATTCTGATTCTGATTCTGTTACTAATAT-TG
1 ATTCTGATTCTGATTCTGTTACTAATATCTG
*
76976153 ATTCTGATTCTGATTCTGTTACTGAT-TCTG
1 ATTCTGATTCTGATTCTGTTACTAATATCTG
76976183 ATTCTGATTCT
1 ATTCTGATTCT
76976194 CATTTTGGTT
Statistics
Matches: 95, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
29 1 0.01
30 70 0.74
31 23 0.24
32 1 0.01
ACGTcount: A:0.21, C:0.17, G:0.14, T:0.48
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTTACTAATATCTG
Found at i:76976711 original size:17 final size:18
Alignment explanation
Indices: 76976678--76976711 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
76976668 TTTAAAGAAG
76976678 GGTTTTCAATGAAAACAA
1 GGTTTTCAATGAAAACAA
*
76976696 GGTTTTCGAT-AAAACA
1 GGTTTTCAATGAAAACA
76976712 CTTCAATGTG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.41, C:0.12, G:0.18, T:0.29
Consensus pattern (18 bp):
GGTTTTCAATGAAAACAA
Found at i:76978196 original size:49 final size:51
Alignment explanation
Indices: 76978137--76978236 Score: 150
Period size: 49 Copynumber: 2.0 Consensus size: 51
76978127 AAGTTGAAAG
* *
76978137 TTAGTATTCAAATTGAAAGGAATGTTTGCTCAGCTAAGTA-TT-CGATGAT
1 TTAGTATTCAAATTGAAAGGAATGTTTACTCAACTAAGTATTTGCGATGAT
* *
76978186 TTAGTATTCAAATTGAGAGGAATGTTTACTCAACTGAGTATTTGCGATGAT
1 TTAGTATTCAAATTGAAAGGAATGTTTACTCAACTAAGTATTTGCGATGAT
76978237 GGTTGTTTGC
Statistics
Matches: 45, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
49 36 0.80
50 2 0.04
51 7 0.16
ACGTcount: A:0.32, C:0.10, G:0.21, T:0.37
Consensus pattern (51 bp):
TTAGTATTCAAATTGAAAGGAATGTTTACTCAACTAAGTATTTGCGATGAT
Found at i:76979323 original size:86 final size:85
Alignment explanation
Indices: 76979221--76979391 Score: 234
Period size: 86 Copynumber: 2.0 Consensus size: 85
76979211 ATTGAAAGCA
* * * * *
76979221 GCATCAAATAGACAAAAATCATATGCTGATCTGAAACAGAAAGAAATTGAATATGTTGTGGGTGA
1 GCATCAAATAGACAAAAATCATATGCTGATCTGAAACAAAAAGAAACTAAATATGCTGTAGGTGA
*
76979286 AAAAGTATTTCTAAAAGTCTC
66 AAAAGCATTT-TAAAAGTCTC
* * * *
76979307 GCATCAGATAGGCAAAATTCATATGCTGGTCTGAAACAAAAAGAAACTAAATATGCTGTAGGTGA
1 GCATCAAATAGACAAAAATCATATGCTGATCTGAAACAAAAAGAAACTAAATATGCTGTAGGTGA
*
76979372 AAAAGCATTTTTAAAGTCTC
66 AAAAGCATTTTAAAAGTCTC
76979392 TTTGTGAAAG
Statistics
Matches: 74, Mismatches: 11, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
85 9 0.12
86 65 0.88
ACGTcount: A:0.42, C:0.13, G:0.19, T:0.26
Consensus pattern (85 bp):
GCATCAAATAGACAAAAATCATATGCTGATCTGAAACAAAAAGAAACTAAATATGCTGTAGGTGA
AAAAGCATTTTAAAAGTCTC
Found at i:76988114 original size:24 final size:25
Alignment explanation
Indices: 76988087--76988137 Score: 59
Period size: 25 Copynumber: 2.1 Consensus size: 25
76988077 GCCTAGCCTC
76988087 TTTTAAT-AACTAGGGCAAAGCCCT
1 TTTTAATAAACTAGGGCAAAGCCCT
** * *
76988111 TTTTGGTAAATTGGGGCAAAGCCCT
1 TTTTAATAAACTAGGGCAAAGCCCT
76988136 TT
1 TT
76988138 CGCACTTCCT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
24 5 0.23
25 17 0.77
ACGTcount: A:0.27, C:0.18, G:0.22, T:0.33
Consensus pattern (25 bp):
TTTTAATAAACTAGGGCAAAGCCCT
Found at i:76996290 original size:21 final size:21
Alignment explanation
Indices: 76996263--76996323 Score: 88
Period size: 21 Copynumber: 2.9 Consensus size: 21
76996253 TATAATGAGT
76996263 ATATCATAGCATATCATGTGC
1 ATATCATAGCATATCATGTGC
* *
76996284 ATCTCATAACATATCATGTGC
1 ATATCATAGCATATCATGTGC
76996305 ATATCAT-GTCATATCATGT
1 ATATCATAG-CATATCATGT
76996324 AGAACAATAT
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.33, C:0.20, G:0.11, T:0.36
Consensus pattern (21 bp):
ATATCATAGCATATCATGTGC
Found at i:76996322 original size:10 final size:10
Alignment explanation
Indices: 76996263--76996323 Score: 61
Period size: 10 Copynumber: 5.9 Consensus size: 10
76996253 TATAATGAGT
76996263 ATATCATAG-C
1 ATATCAT-GTC
76996273 ATATCATGTGC
1 ATATCATGT-C
* **
76996284 ATCTCATAAC
1 ATATCATGTC
76996294 ATATCATGTGC
1 ATATCATGT-C
76996305 ATATCATGTC
1 ATATCATGTC
76996315 ATATCATGT
1 ATATCATGT
76996324 AGAACAATAT
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
9 1 0.02
10 24 0.57
11 17 0.40
ACGTcount: A:0.33, C:0.20, G:0.11, T:0.36
Consensus pattern (10 bp):
ATATCATGTC
Found at i:76999265 original size:57 final size:59
Alignment explanation
Indices: 76999183--76999304 Score: 162
Period size: 57 Copynumber: 2.1 Consensus size: 59
76999173 ATTTCTAGTT
*
76999183 CATTTTCA-TTTTCATTTTTGGAGAAAA-CTACACTCATTTCCAAATGTTT-TCATTTCTC
1 CATTTT-ATTTTTCATTTTTGCAGAAAACCT-CACTCATTTCCAAATGTTTCTCATTTCTC
* * *
76999241 TATTTTATTTTTCA-TTTTGCAGAAAACCTCATTCATTTTCAAATGTTTCTCATTTCTC
1 CATTTTATTTTTCATTTTTGCAGAAAACCTCACTCATTTCCAAATGTTTCTCATTTCTC
76999299 CATTTT
1 CATTTT
76999305 TGTCATATTA
Statistics
Matches: 56, Mismatches: 5, Indels: 6
0.84 0.07 0.09
Matches are distributed among these distances:
57 29 0.52
58 27 0.48
ACGTcount: A:0.25, C:0.20, G:0.06, T:0.50
Consensus pattern (59 bp):
CATTTTATTTTTCATTTTTGCAGAAAACCTCACTCATTTCCAAATGTTTCTCATTTCTC
Found at i:77004034 original size:39 final size:39
Alignment explanation
Indices: 77003991--77004205 Score: 283
Period size: 39 Copynumber: 5.5 Consensus size: 39
77003981 ATTCACTTTT
* * * *
77003991 AAGCATATATCACATTACACATATAATCATATAATAGTC
1 AAGCATATATCACAATACTCATATAATCACATAATATTC
* * *
77004030 AAGCATATACCACAATACTTATATAATCACATAACATTC
1 AAGCATATATCACAATACTCATATAATCACATAATATTC
*
77004069 AAGCATATATCTCAATACTCATATAATCACATAACT-TTC
1 AAGCATATATCACAATACTCATATAATCACATAA-TATTC
*
77004108 AAACATATATCACAATACTCATATAATCACATACAT-TT-
1 AAGCATATATCACAATACTCATATAATCACATA-ATATTC
* *
77004146 AAGCATATATCACAATACTCATATAATCACTTAACATTC
1 AAGCATATATCACAATACTCATATAATCACATAATATTC
*
77004185 AAGCATATATCATAATACTCA
1 AAGCATATATCACAATACTCA
77004206 ACAACATGTT
Statistics
Matches: 155, Mismatches: 17, Indels: 8
0.86 0.09 0.04
Matches are distributed among these distances:
37 1 0.01
38 33 0.21
39 120 0.77
40 1 0.01
ACGTcount: A:0.45, C:0.21, G:0.03, T:0.31
Consensus pattern (39 bp):
AAGCATATATCACAATACTCATATAATCACATAATATTC
Found at i:77004132 original size:16 final size:17
Alignment explanation
Indices: 77004111--77004175 Score: 55
Period size: 16 Copynumber: 3.6 Consensus size: 17
77004101 AACTTTCAAA
77004111 CATAT-ATCACAATACT
1 CATATAATCACAATACT
77004127 CATATAATCAC-ATACATTT
1 CATATAATCACAATAC---T
77004146 AAGCATAT-ATCACAATACT
1 ---CATATAATCACAATACT
77004165 CATATAATCAC
1 CATATAATCAC
77004176 TTAACATTCA
Statistics
Matches: 40, Mismatches: 0, Indels: 17
0.70 0.00 0.30
Matches are distributed among these distances:
16 14 0.35
17 10 0.25
19 2 0.05
21 5 0.12
22 9 0.22
ACGTcount: A:0.45, C:0.23, G:0.02, T:0.31
Consensus pattern (17 bp):
CATATAATCACAATACT
Found at i:77004190 original size:116 final size:116
Alignment explanation
Indices: 77003985--77004205 Score: 320
Period size: 116 Copynumber: 1.9 Consensus size: 116
77003975 AATCATATTC
* * * * *
77003985 ACTTTTAAGCATATATCACATTACACATATAATCATATAATAGTCAAGCATATACCACAATACTT
1 ACTTTCAAACATATATCACAATACACATATAATCACATAATA-TCAAGCATATACCACAATACTC
77004050 ATATAATCACATAACATTCAAGCATATATC-TCAATACTCATATAATCACATA
65 ATATAATCACATAACATTCAAGCATATATCAT-AATACTCATATAATCACATA
* * *
77004102 ACTTTCAAACATATATCACAATACTCATATAATCACATACAT-TTAAGCATATATCACAATACTC
1 ACTTTCAAACATATATCACAATACACATATAATCACATA-ATATCAAGCATATACCACAATACTC
*
77004166 ATATAATCACTTAACATTCAAGCATATATCATAATACTCA
65 ATATAATCACATAACATTCAAGCATATATCATAATACTCA
77004206 ACAACATGTT
Statistics
Matches: 93, Mismatches: 9, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
116 56 0.60
117 35 0.38
118 2 0.02
ACGTcount: A:0.44, C:0.21, G:0.03, T:0.32
Consensus pattern (116 bp):
ACTTTCAAACATATATCACAATACACATATAATCACATAATATCAAGCATATACCACAATACTCA
TATAATCACATAACATTCAAGCATATATCATAATACTCATATAATCACATA
Found at i:77007300 original size:28 final size:28
Alignment explanation
Indices: 77007269--77007325 Score: 73
Period size: 28 Copynumber: 2.0 Consensus size: 28
77007259 TCATTTTTCA
77007269 TGTCCTAGCA-GACTTACC-CTGTGTTTAC
1 TGTCCT-GCAGGACTTACCTC-GTGTTTAC
*
77007297 TGTCCTGGAGGACTTACCTCGTGTTTAC
1 TGTCCTGCAGGACTTACCTCGTGTTTAC
77007325 T
1 T
77007326 ATCCCAATGA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
27 2 0.08
28 23 0.88
29 1 0.04
ACGTcount: A:0.16, C:0.26, G:0.21, T:0.37
Consensus pattern (28 bp):
TGTCCTGCAGGACTTACCTCGTGTTTAC
Found at i:77007504 original size:33 final size:33
Alignment explanation
Indices: 77007406--77007505 Score: 121
Period size: 33 Copynumber: 3.0 Consensus size: 33
77007396 GAATGAAGTG
*
77007406 TCTCTATTTTGTGTTTACTGTCCCAGCAGACTA
1 TCTCTATTTTGTGTTTACTGTCCCAGTAGACTA
* * * * *
77007439 CCTCTAATTTGTGTCTAC-GATCCTAGTGGACTA
1 TCTCTATTTTGTGTTTACTG-TCCCAGTAGACTA
*
77007472 TCTCTATTTTGTGTTTACTGTCCCAATAGACTA
1 TCTCTATTTTGTGTTTACTGTCCCAGTAGACTA
77007505 T
1 T
77007506 GTTTATTGTC
Statistics
Matches: 53, Mismatches: 12, Indels: 4
0.77 0.17 0.06
Matches are distributed among these distances:
32 1 0.02
33 51 0.96
34 1 0.02
ACGTcount: A:0.20, C:0.23, G:0.15, T:0.42
Consensus pattern (33 bp):
TCTCTATTTTGTGTTTACTGTCCCAGTAGACTA
Found at i:77007515 original size:22 final size:22
Alignment explanation
Indices: 77007483--77007527 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
77007473 CTCTATTTTG
*
77007483 TGTTTACTGTCCCAATAGACTA
1 TGTTTACTGTCCCAACAGACTA
*
77007505 TGTTTATTGTCCCAACAGACTA
1 TGTTTACTGTCCCAACAGACTA
77007527 T
1 T
77007528 CTCCATGGAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.27, C:0.22, G:0.13, T:0.38
Consensus pattern (22 bp):
TGTTTACTGTCCCAACAGACTA
Found at i:77014564 original size:27 final size:27
Alignment explanation
Indices: 77014534--77014626 Score: 96
Period size: 27 Copynumber: 3.4 Consensus size: 27
77014524 TTATTTTACC
* * *
77014534 CTACAGGGGTATGTCGGTCATTTTAAA
1 CTACAAGGGTATGTCAGTAATTTTAAA
* *
77014561 CTACAAGGGTATTTCAGTAATTTTACA
1 CTACAAGGGTATGTCAGTAATTTTAAA
* * *
77014588 CTACAAGGGTATTTCAGTAATATTACA
1 CTACAAGGGTATGTCAGTAATTTTAAA
* *
77014615 CTATAATGGTAT
1 CTACAAGGGTAT
77014627 TTTGATGATT
Statistics
Matches: 58, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 58 1.00
ACGTcount: A:0.32, C:0.14, G:0.18, T:0.35
Consensus pattern (27 bp):
CTACAAGGGTATGTCAGTAATTTTAAA
Found at i:77014626 original size:54 final size:54
Alignment explanation
Indices: 77014521--77014628 Score: 126
Period size: 54 Copynumber: 2.0 Consensus size: 54
77014511 AAGGGCAAAA
* * * * * *
77014521 CAGTTATTTTACCCTACAGGGGTATGTCGGTCATTTTAAACTACAAGGGTATTT
1 CAGTAATTTTACACTACAAGGGTATGTCAGTAATATTAAACTACAAGGGTATTT
* * * *
77014575 CAGTAATTTTACACTACAAGGGTATTTCAGTAATATTACACTATAATGGTATTT
1 CAGTAATTTTACACTACAAGGGTATGTCAGTAATATTAAACTACAAGGGTATTT
77014629 TGATGATTTT
Statistics
Matches: 44, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
54 44 1.00
ACGTcount: A:0.31, C:0.15, G:0.17, T:0.38
Consensus pattern (54 bp):
CAGTAATTTTACACTACAAGGGTATGTCAGTAATATTAAACTACAAGGGTATTT
Found at i:77014679 original size:53 final size:54
Alignment explanation
Indices: 77014622--77015269 Score: 733
Period size: 54 Copynumber: 12.1 Consensus size: 54
77014612 ACACTATAAT
* * *
77014622 GGTATTTTGATGATTTTACAAATCGGGGGTGTTTC-GTAATTTTACAAATCGAG
1 GGTATTTTGATAATTTTACAAATCGAGGGTATTTCGGTAATTTTACAAATCGAG
* * **
77014675 GGTATTTTCATAATTTTA-TAATCGAGGGTATTTCAATAATTTTACAAATCGAG
1 GGTATTTTGATAATTTTACAAATCGAGGGTATTTCGGTAATTTTACAAATCGAG
* * * * * * *
77014728 GGTGTTTTGGTAATTTTACAAATCAAGGTTGTTTCGATAATTTTACAAATCGGG
1 GGTATTTTGATAATTTTACAAATCGAGGGTATTTCGGTAATTTTACAAATCGAG
* * *
77014782 GGTATTTTGATAATTTTACAAATCAAGGGTGTTTCGGTAATTTTACAAATCGAA
1 GGTATTTTGATAATTTTACAAATCGAGGGTATTTCGGTAATTTTACAAATCGAG
* * * *
77014836 GGTGTTTCGATAATTTCACAAAT-TAGGGGTATTTCGGTAATTTTACAAATCGAG
1 GGTATTTTGATAATTTTACAAATCGA-GGGTATTTCGGTAATTTTACAAATCGAG
* * * ** *
77014890 AGTA-TTTCAGTAATTTCAC-AATCGAGGGTATTTCAATAATTTTATAAATCGAG
1 GGTATTTTGA-TAATTTTACAAATCGAGGGTATTTCGGTAATTTTACAAATCGAG
* * ** *
77014943 GGTATTTTGATAATTTCAC-AATCAAGGGTATTTTAGTAATTTTACAAATTGAG
1 GGTATTTTGATAATTTTACAAATCGAGGGTATTTCGGTAATTTTACAAATCGAG
* * *
77014996 GGTA-TTTCAGTAATTTCAC-AATCGAGGGTATTTCGATAATTTTACAAATCGAG
1 GGTATTTTGA-TAATTTTACAAATCGAGGGTATTTCGGTAATTTTACAAATCGAG
* * ** *
77015049 GTTATTTTGGTAATTTTACAAATTAAAGGTATTTCGGTAATTTTACAAATCGAG
1 GGTATTTTGATAATTTTACAAATCGAGGGTATTTCGGTAATTTTACAAATCGAG
* * *
77015103 GGTATTTTGGTAATTTTACAAATCGAGGGTATTTCGATAATTTCAC-AATCGAG
1 GGTATTTTGATAATTTTACAAATCGAGGGTATTTCGGTAATTTTACAAATCGAG
* * *
77015156 GGTA-TTTCAGTAATTTCAC-AATCGATGGTATTTCGGTAATTTTACAAATCGAG
1 GGTATTTTGA-TAATTTTACAAATCGAGGGTATTTCGGTAATTTTACAAATCGAG
* * * *
77015209 GGTATTTCGGTAATTTTACAAATCGAGAGTATTTTGGTAATTTTACAAATCGAG
1 GGTATTTTGATAATTTTACAAATCGAGGGTATTTCGGTAATTTTACAAATCGAG
77015263 GGTATTT
1 GGTATTT
77015270 CAGTAATTTC
Statistics
Matches: 507, Mismatches: 75, Indels: 25
0.84 0.12 0.04
Matches are distributed among these distances:
52 43 0.08
53 212 0.42
54 252 0.50
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.39
Consensus pattern (54 bp):
GGTATTTTGATAATTTTACAAATCGAGGGTATTTCGGTAATTTTACAAATCGAG
Found at i:77014691 original size:27 final size:26
Alignment explanation
Indices: 77014566--77015278 Score: 616
Period size: 27 Copynumber: 26.7 Consensus size: 26
77014556 TTAAACTACA
* *
77014566 AGGGTATTTCAGTAATTTTAC-ACTACA
1 AGGGTATTTCA-TAATTTTACAAAT-CG
* * *
77014593 AGGGTATTTCAGTAATATTACACTAT-A
1 AGGGTATTTCA-TAATTTTACA-AATCG
* * *
77014620 ATGGTATTTTGATGATTTTACAAATCG
1 AGGGTA-TTTCATAATTTTACAAATCG
* * *
77014647 GGGGTGTTTCGTAATTTTACAAATCG
1 AGGGTATTTCATAATTTTACAAATCG
*
77014673 AGGGTATTTTCATAATTTTA-TAATCG
1 AGGGTA-TTTCATAATTTTACAAATCG
77014699 AGGGTATTTCAATAATTTTACAAATCG
1 AGGGTATTTC-ATAATTTTACAAATCG
* ** *
77014726 AGGGTGTTTTGGTAATTTTACAAATCA
1 AGGGT-ATTTCATAATTTTACAAATCG
* *
77014753 AGGTTGTTTCGATAATTTTACAAATCG
1 AGGGTATTTC-ATAATTTTACAAATCG
* * *
77014780 GGGGTATTTTGATAATTTTACAAATCA
1 AGGGTA-TTTCATAATTTTACAAATCG
* *
77014807 AGGGTGTTTCGGTAATTTTACAAATCG
1 AGGGTATTTC-ATAATTTTACAAATCG
* * * *
77014834 AAGGTGTTTCGATAATTTCACAAAT-T
1 AGGGTATTTC-ATAATTTTACAAATCG
*
77014860 AGGGGTATTTCGGTAATTTTACAAATCG
1 A-GGGTATTTC-ATAATTTTACAAATCG
* *
77014888 AGAGTATTTCAGTAATTTCAC-AATCG
1 AGGGTATTTCA-TAATTTTACAAATCG
*
77014914 AGGGTATTTCAATAATTTTATAAATCG
1 AGGGTATTTC-ATAATTTTACAAATCG
* * *
77014941 AGGGTATTTTGATAATTTCAC-AATCA
1 AGGGTA-TTTCATAATTTTACAAATCG
* *
77014967 AGGGTATTTTAGTAATTTTACAAATTG
1 AGGGTATTTCA-TAATTTTACAAATCG
*
77014994 AGGGTATTTCAGTAATTTCAC-AATCG
1 AGGGTATTTCA-TAATTTTACAAATCG
77015020 AGGGTATTTCGATAATTTTACAAATCG
1 AGGGTATTTC-ATAATTTTACAAATCG
* ** **
77015047 AGGTTATTTTGGTAATTTTACAAATTA
1 AGGGTA-TTTCATAATTTTACAAATCG
* *
77015074 AAGGTATTTCGGTAATTTTACAAATCG
1 AGGGTATTTC-ATAATTTTACAAATCG
**
77015101 AGGGTATTTTGGTAATTTTACAAATCG
1 AGGGTA-TTTCATAATTTTACAAATCG
*
77015128 AGGGTATTTCGATAATTTCAC-AATCG
1 AGGGTATTTC-ATAATTTTACAAATCG
*
77015154 AGGGTATTTCAGTAATTTCAC-AATCG
1 AGGGTATTTCA-TAATTTTACAAATCG
* *
77015180 ATGGTATTTCGGTAATTTTACAAATCG
1 AGGGTATTTC-ATAATTTTACAAATCG
*
77015207 AGGGTATTTCGGTAATTTTACAAATCG
1 AGGGTATTTC-ATAATTTTACAAATCG
* **
77015234 AGAGTATTTTGGTAATTTTACAAATCG
1 AGGGTA-TTTCATAATTTTACAAATCG
77015261 AGGGTATTTCAGTAATTT
1 AGGGTATTTCA-TAATTT
77015279 CTCTTTATTA
Statistics
Matches: 566, Mismatches: 90, Indels: 60
0.79 0.13 0.08
Matches are distributed among these distances:
25 9 0.02
26 166 0.29
27 367 0.65
28 23 0.04
29 1 0.00
ACGTcount: A:0.32, C:0.10, G:0.19, T:0.39
Consensus pattern (26 bp):
AGGGTATTTCATAATTTTACAAATCG
Found at i:77015014 original size:160 final size:161
Alignment explanation
Indices: 77014540--77015269 Score: 836
Period size: 160 Copynumber: 4.6 Consensus size: 161
77014530 TACCCTACAG
* * * * * *
77014540 GGGTATGTCGGTCATTTTA-AACTACAAGGGTATTTCAGTAATTTTAC-ACTACAAGGGTATTTC
1 GGGTATTTCGGTAATTTTACAAAT-CGAGGGTATTTCGGTAATTTTACAAAT-CAAGGGTATTTC
* * * * * * ** *
77014603 AGTAATATTACACTAT-AATGGTATTTTGATGATTTTACAAATCGGGGGT-GTTTCGTAATTTTA
64 GGTAATTTTACA-AATCGAGGGTATTTTGATAATTTTACAAATCAAGGGTATTTTCGTAATTTTA
* *
77014666 CAAATCGAGGGTATTTTCA-TAATTTTATAATCGA
128 CAAATCGAGGGTA-TTTCAGTAATTTCACAATCGA
** * * * * *
77014700 GGGTATTTCAATAATTTTACAAATCGAGGGTGTTTTGGTAATTTTACAAATCAAGGTTGTTTCGA
1 GGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCGGTAATTTTACAAATCAAGGGTATTTCGG
* *
77014765 TAATTTTACAAATCGGGGGTATTTTGATAATTTTACAAATCAAGGGT-GTTTCGGTAATTTTACA
66 TAATTTTACAAATCGAGGGTATTTTGATAATTTTACAAATCAAGGGTATTTTC-GTAATTTTACA
* * *
77014829 AATCGAAGGTGTTTC-GATAATTTCACAAAT-TA
130 AATCGAGGGTATTTCAG-TAATTTCAC-AATCGA
* * * * *
77014861 GGGGTATTTCGGTAATTTTACAAATCGAGAGTATTTCAGTAATTTCAC-AATCGAGGGTATTTCA
1 -GGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCGGTAATTTTACAAATCAAGGGTATTTCG
* * * *
77014925 ATAATTTTATAAATCGAGGGTATTTTGATAATTTCAC-AATCAAGGGTATTTTAGTAATTTTACA
65 GTAATTTTACAAATCGAGGGTATTTTGATAATTTTACAAATCAAGGGTATTTTCGTAATTTTACA
*
77014989 AATTGAGGGTATTTCAGTAATTTCACAATCGA
130 AATCGAGGGTATTTCAGTAATTTCACAATCGA
* * * * *
77015021 GGGTATTTCGATAATTTTACAAATCGAGGTTATTTTGGTAATTTTACAAATTAAAGGTATTTCGG
1 GGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCGGTAATTTTACAAATCAAGGGTATTTCGG
* * *
77015086 TAATTTTACAAATCGAGGGTATTTTGGTAATTTTACAAATCGAGGGTA-TTTCGATAATTTCAC-
66 TAATTTTACAAATCGAGGGTATTTTGATAATTTTACAAATCAAGGGTATTTTCG-TAATTTTACA
77015149 AATCGAGGGTATTTCAGTAATTTCACAATCGA
130 AATCGAGGGTATTTCAGTAATTTCACAATCGA
* * * *
77015181 TGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCGGTAATTTTACAAATCGAGAGTATTTTGG
1 GGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCGGTAATTTTACAAATCAAGGGTATTTCGG
77015246 TAATTTTACAAATCGAGGGTATTT
66 TAATTTTACAAATCGAGGGTATTT
77015270 CAGTAATTTC
Statistics
Matches: 482, Mismatches: 74, Indels: 28
0.83 0.13 0.05
Matches are distributed among these distances:
159 46 0.10
160 292 0.61
161 101 0.21
162 43 0.09
ACGTcount: A:0.32, C:0.10, G:0.19, T:0.39
Consensus pattern (161 bp):
GGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCGGTAATTTTACAAATCAAGGGTATTTCGG
TAATTTTACAAATCGAGGGTATTTTGATAATTTTACAAATCAAGGGTATTTTCGTAATTTTACAA
ATCGAGGGTATTTCAGTAATTTCACAATCGA
Found at i:77015639 original size:28 final size:28
Alignment explanation
Indices: 77015593--77015658 Score: 78
Period size: 28 Copynumber: 2.4 Consensus size: 28
77015583 TTTGGCCCCT
* * * *
77015593 TTAGGCCCAATCTCGTTCACATTGCCTA
1 TTAGGCCCAATCACATTCACATGGCCCA
*
77015621 TTAGGCCCAATCACATTCATATGGCCCA
1 TTAGGCCCAATCACATTCACATGGCCCA
*
77015649 TCAGGCCCAA
1 TTAGGCCCAA
77015659 ATACTTCCCA
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.26, C:0.33, G:0.15, T:0.26
Consensus pattern (28 bp):
TTAGGCCCAATCACATTCACATGGCCCA
Found at i:77024150 original size:31 final size:31
Alignment explanation
Indices: 77024112--77024171 Score: 120
Period size: 31 Copynumber: 1.9 Consensus size: 31
77024102 CTCATCTAAG
77024112 ATAAATTACATGGTGTTTTGTTATGTGACGA
1 ATAAATTACATGGTGTTTTGTTATGTGACGA
77024143 ATAAATTACATGGTGTTTTGTTATGTGAC
1 ATAAATTACATGGTGTTTTGTTATGTGAC
77024172 TAACTCATTG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.28, C:0.07, G:0.22, T:0.43
Consensus pattern (31 bp):
ATAAATTACATGGTGTTTTGTTATGTGACGA
Found at i:77024800 original size:20 final size:20
Alignment explanation
Indices: 77024775--77024813 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
77024765 AGGTGACCAC
77024775 ACGGGCGTGTCCCAATGCAA
1 ACGGGCGTGTCCCAATGCAA
77024795 ACGGGCGTGTCCCAATGCA
1 ACGGGCGTGTCCCAATGCA
77024814 CACAGGTGTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.23, C:0.31, G:0.31, T:0.15
Consensus pattern (20 bp):
ACGGGCGTGTCCCAATGCAA
Found at i:77024824 original size:20 final size:20
Alignment explanation
Indices: 77024778--77024824 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
77024768 TGACCACACG
*
77024778 GGCGTGTCCCAATGCAAACG
1 GGCGTGTCCCAATGCAAACA
*
77024798 GGCGTGTCCCAATGCACACA
1 GGCGTGTCCCAATGCAAACA
*
77024818 GGTGTGT
1 GGCGTGT
77024825 GTATGATCTC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.21, C:0.28, G:0.32, T:0.19
Consensus pattern (20 bp):
GGCGTGTCCCAATGCAAACA
Found at i:77028326 original size:6 final size:6
Alignment explanation
Indices: 77028315--77028344 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
77028305 CCATTTTCTC
77028315 CATTTT CATTTT CATTTT CATTTT CATTTT
1 CATTTT CATTTT CATTTT CATTTT CATTTT
77028345 GGAGAAAACT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.17, C:0.17, G:0.00, T:0.67
Consensus pattern (6 bp):
CATTTT
Found at i:77033768 original size:22 final size:23
Alignment explanation
Indices: 77033730--77033773 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 23
77033720 TAAATCCAAT
77033730 AAAACAAAAAAGAAAACAAACCC
1 AAAACAAAAAAGAAAACAAACCC
*
77033753 AAAAC-AAAAAGTAAACAAACC
1 AAAACAAAAAAGAAAACAAACC
77033774 TGGTTAGATA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 15 0.75
23 5 0.25
ACGTcount: A:0.73, C:0.20, G:0.05, T:0.02
Consensus pattern (23 bp):
AAAACAAAAAAGAAAACAAACCC
Found at i:77036643 original size:27 final size:27
Alignment explanation
Indices: 77036605--77036658 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
77036595 CATCAAGTAA
77036605 ACATAGATGAGCTTATCATGCAATATT
1 ACATAGATGAGCTTATCATGCAATATT
77036632 ACATAGATGAGCTTATCATGCAATATT
1 ACATAGATGAGCTTATCATGCAATATT
77036659 CTTTCAAGAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.37, C:0.15, G:0.15, T:0.33
Consensus pattern (27 bp):
ACATAGATGAGCTTATCATGCAATATT
Found at i:77041721 original size:28 final size:28
Alignment explanation
Indices: 77041678--77041741 Score: 74
Period size: 28 Copynumber: 2.3 Consensus size: 28
77041668 TGGGAAGTAG
* * * * *
77041678 TTGGACCTGATGGGCCATATGAATGTGA
1 TTGGGCCTGATAGGCCACATGAACGAGA
*
77041706 TTGGGCCTGATAGGCCACGTGAACGAGA
1 TTGGGCCTGATAGGCCACATGAACGAGA
77041734 TTGGGCCT
1 TTGGGCCT
77041742 AAAAGGGCCA
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.22, C:0.19, G:0.34, T:0.25
Consensus pattern (28 bp):
TTGGGCCTGATAGGCCACATGAACGAGA
Found at i:77042095 original size:27 final size:27
Alignment explanation
Indices: 77042057--77042516 Score: 487
Period size: 27 Copynumber: 17.1 Consensus size: 27
77042047 TGATAAAGAG
* *
77042057 AAATTACTGAAATGCCCTCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
*
77042084 AAATTACCGAAATACCCCCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* * *
77042111 AAATCATCAAAATACCCTCGA-TTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
*
77042137 AAATTACCGAAATACCCTCGATCTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* * *
77042164 AAATTATCGAAATACCC-CTAATTTGTG
1 AAATTACCGAAATACCCTC-GATTTGTA
* *
77042191 AAATTACCAAAACACCCTCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
**
77042218 AAATTATAGAAATACCCTCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
** * *
77042245 AAATTACAAAAATACCCTC-AATTGTG
1 AAATTACCGAAATACCCTCGATTTGTA
**
77042271 AAATTACTAAAATACCCTCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
** * * *
77042298 AAATTATTGAAATACCCACGATTCGTG
1 AAATTACCGAAATACCCTCGATTTGTA
* * *
77042325 AAATTATCGAAACACCCTTGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* * * *
77042352 AAATTACCGACACACTCTCAATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* *
77042379 AAATTATCGAAACACCCTCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* * *
77042406 AAATTTCCAAAATACCCTTGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* *
77042433 AAATTACTGAAATACCCTTGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* *
77042460 AAATTATCGAAATACTCTCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* *
77042487 AAATTA-CGAAACACCCTCAATTTGTGA
1 AAATTACCGAAATACCCTCGATTTGT-A
77042514 AAA
1 AAA
77042517 AGAAAGACGG
Statistics
Matches: 362, Mismatches: 66, Indels: 10
0.83 0.15 0.02
Matches are distributed among these distances:
26 63 0.17
27 298 0.82
28 1 0.00
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.31
Consensus pattern (27 bp):
AAATTACCGAAATACCCTCGATTTGTA
Found at i:77042298 original size:134 final size:134
Alignment explanation
Indices: 77042071--77042516 Score: 549
Period size: 134 Copynumber: 3.3 Consensus size: 134
77042061 TACTGAAATG
* * * * *
77042071 CCCTCGATTTGTAAAATTACCGAAATACCCCCGATTTGTAAAATCATCAAAATACCCTCGATTGT
1 CCCTCGATTTGTAAAATTACCGAAACACCCTCAATTTGTAAAATTATCAAAATACCCTCAATTGT
* * * * *
77042136 AAAATTACCGAAATACCCTCGATCTGTAAAATTATCGAAATACCCCTAATTTGTGAAATTACCAA
66 AAAATTACCAAAATACCCTCGATTTGTAAAATTATCGAAATACCCCTGATTTGTGAAATTATCGA
77042201 AACA
131 AACA
** * *
77042205 CCCTCGATTTGTAAAATTATAGAAATACCCTCGATTTGTAAAATTA-CAAAAATACCCTCAATTG
1 CCCTCGATTTGTAAAATTACCGAAACACCCTCAATTTGTAAAATTATC-AAAATACCCTCAATTG
* * * *
77042269 TGAAATTACTAAAATACCCTCGATTTGTAAAATTATTGAAATACCCAC-GATTCGTGAAATTATC
65 TAAAATTACCAAAATACCCTCGATTTGTAAAATTATCGAAATACCC-CTGATTTGTGAAATTATC
77042333 GAAACA
129 GAAACA
* * * * * *
77042339 CCCTTGATTTGTAAAATTACCGACACACTCTCAATTTGTAAAATTATCGAAACACCCTCGATTTG
1 CCCTCGATTTGTAAAATTACCGAAACACCCTCAATTTGTAAAATTATCAAAATACCCTC-AATTG
* * * *
77042404 TAAAATTTCCAAAATACCCTTGATTTGTAAAATTA-CTGAAATACCCTTGATTTGTAAAATTATC
65 TAAAATTACCAAAATACCCTCGATTTGTAAAATTATC-GAAATACCCCTGATTTGTGAAATTATC
*
77042468 GAAATA
129 GAAACA
*
77042474 CTCTCGATTTGTAAAATTA-CGAAACACCCTCAATTTGTGAAAA
1 CCCTCGATTTGTAAAATTACCGAAACACCCTCAATTTGT-AAAA
77042517 AGAAAGACGG
Statistics
Matches: 268, Mismatches: 37, Indels: 13
0.84 0.12 0.04
Matches are distributed among these distances:
133 1 0.00
134 181 0.68
135 86 0.32
ACGTcount: A:0.39, C:0.21, G:0.10, T:0.31
Consensus pattern (134 bp):
CCCTCGATTTGTAAAATTACCGAAACACCCTCAATTTGTAAAATTATCAAAATACCCTCAATTGT
AAAATTACCAAAATACCCTCGATTTGTAAAATTATCGAAATACCCCTGATTTGTGAAATTATCGA
AACA
Found at i:77046488 original size:56 final size:56
Alignment explanation
Indices: 77046402--77046620 Score: 275
Period size: 56 Copynumber: 3.9 Consensus size: 56
77046392 CATGGCATCA
* *
77046402 ATATATGTGTGCGAGTAAGACCACGCTTTATACGTTGGCATCGATATGTGACTTCG
1 ATATATGTGTGCGAGTAAGACCGCGTTTTATACGTTGGCATCGATATGTGACTTCG
* * *
77046458 ATATATGTGTGCGAGTAAGACCGCATTTTATACGTTGGCATCAATATGTGACTTCT
1 ATATATGTGTGCGAGTAAGACCGCGTTTTATACGTTGGCATCGATATGTGACTTCG
* * * *
77046514 ATAAATGTGTGCGAGTAAGA-CGACGTTTTATACATTAGCATCGATATGTGACTCCG
1 ATATATGTGTGCGAGTAAGACCG-CGTTTTATACGTTGGCATCGATATGTGACTTCG
* *
77046570 ATATATGTGTGTGAGTAAGACC-C-TGTTTAGGACAG-TGGCATCGATATGTGA
1 ATATATGTGTGCGAGTAAGACCGCGT-TTTA-TAC-GTTGGCATCGATATGTGA
77046621 TTACATGTAA
Statistics
Matches: 141, Mismatches: 17, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
54 1 0.01
55 7 0.05
56 132 0.94
57 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.25, T:0.32
Consensus pattern (56 bp):
ATATATGTGTGCGAGTAAGACCGCGTTTTATACGTTGGCATCGATATGTGACTTCG
Found at i:77046609 original size:112 final size:112
Alignment explanation
Indices: 77046406--77046620 Score: 310
Period size: 112 Copynumber: 1.9 Consensus size: 112
77046396 GCATCAATAT
* * *
77046406 ATGTGTGCGAGTAAGACCACGCTTTATACGTTGGCATCGATATGTGACTTCGATATATGTGTGCG
1 ATGTGTGCGAGTAAGACCACGCTTTATACATTAGCATCGATATGTGACTCCGATATATGTGTGCG
*
77046471 AGTAAGACCGCATTTTATACGTTGGCATCAATATGTGACTTCTATAA
66 AGTAAGACCGCATTTTAGACGTTGGCATCAATATGTGACTTCTATAA
* * *
77046518 ATGTGTGCGAGTAAGACGACGTTTTATACATTAGCATCGATATGTGACTCCGATATATGTGTGTG
1 ATGTGTGCGAGTAAGACCACGCTTTATACATTAGCATCGATATGTGACTCCGATATATGTGTGCG
*
77046583 AGTAAGACC-C-TGTTTAGGACAG-TGGCATCGATATGTGA
66 AGTAAGACCGCAT-TTTA-GAC-GTTGGCATCAATATGTGA
77046621 TTACATGTAA
Statistics
Matches: 92, Mismatches: 8, Indels: 6
0.87 0.08 0.06
Matches are distributed among these distances:
110 1 0.01
111 5 0.05
112 85 0.92
113 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.25, T:0.32
Consensus pattern (112 bp):
ATGTGTGCGAGTAAGACCACGCTTTATACATTAGCATCGATATGTGACTCCGATATATGTGTGCG
AGTAAGACCGCATTTTAGACGTTGGCATCAATATGTGACTTCTATAA
Found at i:77048303 original size:13 final size:13
Alignment explanation
Indices: 77048285--77048309 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
77048275 AGGTTCAAAG
77048285 ATAAATTGATATT
1 ATAAATTGATATT
77048298 ATAAATTGATAT
1 ATAAATTGATAT
77048310 CTCTTTCCAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.00, G:0.08, T:0.44
Consensus pattern (13 bp):
ATAAATTGATATT
Found at i:77049092 original size:55 final size:55
Alignment explanation
Indices: 77049033--77049143 Score: 222
Period size: 55 Copynumber: 2.0 Consensus size: 55
77049023 TCAAAGAAAT
77049033 TAATATATTTTAATTGTTACATGCTATCATCCCTATATCGCACGAAAGAAAACTA
1 TAATATATTTTAATTGTTACATGCTATCATCCCTATATCGCACGAAAGAAAACTA
77049088 TAATATATTTTAATTGTTACATGCTATCATCCCTATATCGCACGAAAGAAAACTA
1 TAATATATTTTAATTGTTACATGCTATCATCCCTATATCGCACGAAAGAAAACTA
77049143 T
1 T
77049144 GTATCGCAGG
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
55 56 1.00
ACGTcount: A:0.38, C:0.18, G:0.09, T:0.35
Consensus pattern (55 bp):
TAATATATTTTAATTGTTACATGCTATCATCCCTATATCGCACGAAAGAAAACTA
Found at i:77054095 original size:12 final size:12
Alignment explanation
Indices: 77054078--77054129 Score: 52
Period size: 12 Copynumber: 4.4 Consensus size: 12
77054068 ATAATTCTAA
*
77054078 AAAAATAAAAAT
1 AAAAATAATAAT
**
77054090 AAAAATAATCTT
1 AAAAATAATAAT
*
77054102 AAAAATTATAAT
1 AAAAATAATAAT
*
77054114 AAAAATATTAA-
1 AAAAATAATAAT
77054125 AAAAA
1 AAAAA
77054130 ACGAATCTGC
Statistics
Matches: 32, Mismatches: 8, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
11 5 0.16
12 27 0.84
ACGTcount: A:0.73, C:0.02, G:0.00, T:0.25
Consensus pattern (12 bp):
AAAAATAATAAT
Found at i:77055444 original size:20 final size:20
Alignment explanation
Indices: 77055418--77055458 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
77055408 ATTTAATTAA
*
77055418 AAAAATTTAAGATTTTTTTAT
1 AAAATTTTAA-ATTTTTTTAT
77055439 AAAATTTTAAATTTTTTTAT
1 AAAATTTTAAATTTTTTTAT
77055459 GTATATATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 10 0.53
21 9 0.47
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.56
Consensus pattern (20 bp):
AAAATTTTAAATTTTTTTAT
Found at i:77055495 original size:11 final size:10
Alignment explanation
Indices: 77055480--77055531 Score: 50
Period size: 11 Copynumber: 4.8 Consensus size: 10
77055470 GAATTTCTAG
77055480 AAAATTTTTT
1 AAAATTTTTT
*
77055490 ATAAATTTTTG
1 A-AAATTTTTT
77055501 AAAATTATTTT
1 AAAATT-TTTT
77055512 AAAATTAATTTT
1 AAAATT--TTTT
*
77055524 AATATTTT
1 AAAATTTT
77055532 ATATTTATTT
Statistics
Matches: 36, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
10 8 0.22
11 18 0.50
12 10 0.28
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (10 bp):
AAAATTTTTT
Found at i:77056406 original size:28 final size:28
Alignment explanation
Indices: 77056366--77056428 Score: 99
Period size: 28 Copynumber: 2.2 Consensus size: 28
77056356 GTCATTATCA
77056366 ACCCCATAAGTTATAAAACTCTTCCTAT
1 ACCCCATAAGTTATAAAACTCTTCCTAT
* * *
77056394 ACCCCATAAGTTATGAGACTTTTCCTAT
1 ACCCCATAAGTTATAAAACTCTTCCTAT
77056422 ACCCCAT
1 ACCCCAT
77056429 TAATATGGGA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.32, C:0.30, G:0.06, T:0.32
Consensus pattern (28 bp):
ACCCCATAAGTTATAAAACTCTTCCTAT
Found at i:77059963 original size:31 final size:30
Alignment explanation
Indices: 77059921--77059979 Score: 91
Period size: 31 Copynumber: 1.9 Consensus size: 30
77059911 ATTTTTGTAG
* *
77059921 GGTGGCCGAATGTGGGGGTTCATTTAGCAA
1 GGTGGCCGAATGTGGAGATTCATTTAGCAA
77059951 GGTGAGCCGAATGTGGAGATTCATTTAGC
1 GGTG-GCCGAATGTGGAGATTCATTTAGC
77059980 TTGGTGCATG
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
30 4 0.15
31 22 0.85
ACGTcount: A:0.22, C:0.14, G:0.37, T:0.27
Consensus pattern (30 bp):
GGTGGCCGAATGTGGAGATTCATTTAGCAA
Found at i:77060804 original size:22 final size:22
Alignment explanation
Indices: 77060776--77060819 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
77060766 TTTTGAACCA
77060776 TTACCATTTCGTACCAAATCCC
1 TTACCATTTCGTACCAAATCCC
*
77060798 TTACCATTTCGTACCAATTCCC
1 TTACCATTTCGTACCAAATCCC
77060820 AAATACCAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.25, C:0.36, G:0.05, T:0.34
Consensus pattern (22 bp):
TTACCATTTCGTACCAAATCCC
Found at i:77061137 original size:14 final size:13
Alignment explanation
Indices: 77061118--77061168 Score: 75
Period size: 13 Copynumber: 3.8 Consensus size: 13
77061108 ATAGGTACGT
*
77061118 AAAAAAAAAGTTTG
1 AAAAAAAAA-ATTG
77061132 AAAAAAAAAATTG
1 AAAAAAAAAATTG
77061145 AAAAAAAAAATTG
1 AAAAAAAAAATTG
77061158 AAAAGAAAAAA
1 AAAA-AAAAAA
77061169 AAAATTGCAT
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
13 20 0.57
14 15 0.43
ACGTcount: A:0.76, C:0.00, G:0.10, T:0.14
Consensus pattern (13 bp):
AAAAAAAAAATTG
Found at i:77063287 original size:17 final size:16
Alignment explanation
Indices: 77063265--77063317 Score: 63
Period size: 16 Copynumber: 3.2 Consensus size: 16
77063255 AGAAAAGAGC
77063265 GAAAATACAAAAGAAAA
1 GAAAATACAAAA-AAAA
77063282 GAAAATGA-AAAAAAAA
1 GAAAAT-ACAAAAAAAA
*
77063298 GAAAATTCAAAAAAAGA
1 GAAAATACAAAAAAA-A
77063315 GAA
1 GAA
77063318 TGAAAAGAGA
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
16 17 0.53
17 14 0.44
18 1 0.03
ACGTcount: A:0.75, C:0.04, G:0.13, T:0.08
Consensus pattern (16 bp):
GAAAATACAAAAAAAA
Found at i:77063292 original size:16 final size:16
Alignment explanation
Indices: 77063273--77063325 Score: 63
Period size: 16 Copynumber: 3.4 Consensus size: 16
77063263 GCGAAAATAC
77063273 AAAAGAAAAGAAAATG
1 AAAAGAAAAGAAAATG
* *
77063289 AAAAAAAAAGAAAATT
1 AAAAGAAAAGAAAATG
* *
77063305 CAAA-AAAAGAGAATG
1 AAAAGAAAAGAAAATG
77063320 AAAAGA
1 AAAAGA
77063326 GAGCGATAAA
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
15 12 0.40
16 18 0.60
ACGTcount: A:0.75, C:0.02, G:0.15, T:0.08
Consensus pattern (16 bp):
AAAAGAAAAGAAAATG
Found at i:77067516 original size:40 final size:40
Alignment explanation
Indices: 77067433--77067735 Score: 405
Period size: 40 Copynumber: 7.6 Consensus size: 40
77067423 TTGAATGCTG
* * * * * *
77067433 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
77067473 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
77067513 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
77067553 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
77067593 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
77067633 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
77067673 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
77067712 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
77067736 TGAACGAGGA
Statistics
Matches: 241, Mismatches: 19, Indels: 7
0.90 0.07 0.03
Matches are distributed among these distances:
39 35 0.15
40 198 0.82
41 8 0.03
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:77069708 original size:27 final size:27
Alignment explanation
Indices: 77069647--77069825 Score: 198
Period size: 27 Copynumber: 6.6 Consensus size: 27
77069637 TAAATTGTAC
77069647 AGCACTAAGTGTGCGATTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* ** *
77069675 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
77069701 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
77069729 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
77069757 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
77069784 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
77069811 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
77069826 GGCTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
27 91 0.71
28 38 0.29
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:77069709 original size:55 final size:55
Alignment explanation
Indices: 77069647--77069825 Score: 202
Period size: 55 Copynumber: 3.3 Consensus size: 55
77069637 TAAATTGTAC
* *
77069647 AGCACTAAGTGTGCGATTTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT
1 AGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAATTGAATATGAT
* * ** * *
77069703 -GCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTTTGACTATG-T
1 AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGA-ATTGAATATGAT
* * * *
77069757 AGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTGTGCGAGTTGATTAT-AT
1 AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAATTGAATATGAT
*
77069811 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
77069826 GGCTCAATAT
Statistics
Matches: 104, Mismatches: 16, Indels: 8
0.81 0.12 0.06
Matches are distributed among these distances:
54 46 0.44
55 58 0.56
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (55 bp):
AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAATTGAATATGAT
Found at i:77069789 original size:82 final size:82
Alignment explanation
Indices: 77069648--77069804 Score: 235
Period size: 82 Copynumber: 1.9 Consensus size: 82
77069638 AAATTGTACA
* * *
77069648 GCACTAAGTGTGCGATTTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTG
1 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGTG
77069713 TGCGAATTGACCATGCG
66 TGCGAATTGACCATGCG
** *
77069730 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACTAAGT
1 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACTAAGT
*
77069794 GTGCGAGTTGA
65 GTGCGAATTGA
77069805 TTATATAGCA
Statistics
Matches: 67, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
81 1 0.01
82 66 0.99
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (82 bp):
GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGTG
TGCGAATTGACCATGCG
Found at i:77069816 original size:82 final size:82
Alignment explanation
Indices: 77069644--77069825 Score: 231
Period size: 82 Copynumber: 2.2 Consensus size: 82
77069634 GATTAAATTG
* * *
77069644 TACAGCACTAAGTGTGCGATTTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTA
1 TACAGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTA
77069709 AGTGTGCGAATTGACCA
66 AGTGTGCGAATTGACCA
* * ** *
77069726 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
77069790 AAGTGTGCGAGTTGATTA
65 AAGTGTGCGAATTGACCA
* *
77069808 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
77069826 GGCTCAATAT
Statistics
Matches: 84, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
81 1 0.01
82 83 0.99
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.30
Consensus pattern (82 bp):
TACAGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTA
AGTGTGCGAATTGACCA
Found at i:77069836 original size:27 final size:27
Alignment explanation
Indices: 77069730--77069836 Score: 70
Period size: 27 Copynumber: 3.9 Consensus size: 27
77069720 TGACCATGCG
* * * *
77069730 GCACTAAGTGTGCGAGTTTGACTATGTA
1 GCACTAAGTGTGCGAG-CTCAATATATA
** * * **
77069758 GCACTAAGTGTGCGATTTGATTACGTA
1 GCACTAAGTGTGCGAGCTCAATATATA
* * *
77069785 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGAGCTCAATATATA
* *
77069812 GCACTGAGTGTGCGGGCTCAATATA
1 GCACTAAGTGTGCGAGCTCAATATA
77069837 CATTCGTGAA
Statistics
Matches: 68, Mismatches: 11, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
27 53 0.78
28 15 0.22
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.31
Consensus pattern (27 bp):
GCACTAAGTGTGCGAGCTCAATATATA
Found at i:77077911 original size:27 final size:27
Alignment explanation
Indices: 77077880--77078057 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
77077870 TAAATTGTAC
77077880 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
77077907 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
77077933 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
77077961 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
77077989 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
77078016 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
77078043 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
77078058 GGCTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:77077994 original size:82 final size:81
Alignment explanation
Indices: 77077881--77078036 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
77077871 AAATTGTACA
* *
77077881 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
77077945 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
77077962 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
77078027 TGCGAGTTGA
65 TGCGAATTGA
77078037 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:77078048 original size:82 final size:81
Alignment explanation
Indices: 77077877--77078057 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
77077867 GATTAAATTG
* *
77077877 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
77077942 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
77077958 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
77078022 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
77078040 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
77078058 GGCTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:77078068 original size:27 final size:27
Alignment explanation
Indices: 77077962--77078068 Score: 70
Period size: 27 Copynumber: 3.9 Consensus size: 27
77077952 TGACCATGCG
* * * *
77077962 GCACTAAGTGTGCGAGTTTGACTATGTA
1 GCACTAAGTGTGCGAG-CTCAATATATA
** * * **
77077990 GCACTAAGTGTGCGATTTGATTACGTA
1 GCACTAAGTGTGCGAGCTCAATATATA
* * *
77078017 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGAGCTCAATATATA
* *
77078044 GCACTGAGTGTGCGGGCTCAATATA
1 GCACTAAGTGTGCGAGCTCAATATA
77078069 CATTCGTGAA
Statistics
Matches: 68, Mismatches: 11, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
27 53 0.78
28 15 0.22
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.31
Consensus pattern (27 bp):
GCACTAAGTGTGCGAGCTCAATATATA
Found at i:77081538 original size:31 final size:30
Alignment explanation
Indices: 77081496--77081554 Score: 91
Period size: 31 Copynumber: 1.9 Consensus size: 30
77081486 ATTTTTGTAG
* *
77081496 GGTGGCCGAATGTGGGGGTTCATTTAGCAA
1 GGTGGCCGAATGTGGAGATTCATTTAGCAA
77081526 GGTGAGCCGAATGTGGAGATTCATTTAGC
1 GGTG-GCCGAATGTGGAGATTCATTTAGC
77081555 TTGGTGCATG
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
30 4 0.15
31 22 0.85
ACGTcount: A:0.22, C:0.14, G:0.37, T:0.27
Consensus pattern (30 bp):
GGTGGCCGAATGTGGAGATTCATTTAGCAA
Found at i:77082380 original size:22 final size:22
Alignment explanation
Indices: 77082352--77082395 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
77082342 TTTTGAACCA
77082352 TTACCATTTCGTACCAAATCCC
1 TTACCATTTCGTACCAAATCCC
*
77082374 TTACCATTTCGTACCAATTCCC
1 TTACCATTTCGTACCAAATCCC
77082396 AAATACCAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.25, C:0.36, G:0.05, T:0.34
Consensus pattern (22 bp):
TTACCATTTCGTACCAAATCCC
Found at i:77085068 original size:28 final size:28
Alignment explanation
Indices: 77085027--77085089 Score: 83
Period size: 28 Copynumber: 2.2 Consensus size: 28
77085017 GTCATTATCA
*
77085027 ACCCCATAAGTTATAAAACTCTTT-CTAT
1 ACCCCATAAATTATAAAACT-TTTCCTAT
* *
77085055 ACCCCATAAATTATGAGACTTTTCCTAT
1 ACCCCATAAATTATAAAACTTTTCCTAT
77085083 ACCCCAT
1 ACCCCAT
77085090 TAATATGGGA
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
27 3 0.10
28 28 0.90
ACGTcount: A:0.33, C:0.29, G:0.05, T:0.33
Consensus pattern (28 bp):
ACCCCATAAATTATAAAACTTTTCCTAT
Found at i:77089250 original size:79 final size:81
Alignment explanation
Indices: 77089141--77089323 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
77089131 TACTCGTTCA
* *
77089141 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
77089204 ATTTAGTAAC-TCGCACC
65 ATATAGTAACTTAGCA-C
**
77089221 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
* *
77089284 TATGGTCACTTAGCAC
66 TATAGTAACTTAGCAC
*
77089300 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
77089324 CATCATTCGA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 59 0.66
80 28 0.31
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:77089323 original size:40 final size:40
Alignment explanation
Indices: 77089120--77089323 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
77089110 CGGAATTTAA
** *
77089120 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
77089160 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
77089200 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
77089239 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
77089279 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
77089319 CCGGA
1 CCGGA
77089324 CATCATTCGA
Statistics
Matches: 141, Mismatches: 16, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 94 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:77090523 original size:56 final size:56
Alignment explanation
Indices: 77090456--77090575 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
77090446 TATTAGTTTA
77090456 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
*
77090512 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
77090568 TTGCCCAT
1 TTGCCCAT
77090576 CATCCCTTGT
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.23, C:0.23, G:0.09, T:0.45
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:77097145 original size:79 final size:80
Alignment explanation
Indices: 77097047--77097229 Score: 230
Period size: 79 Copynumber: 2.3 Consensus size: 80
77097037 TACTCGTTCA
* *
77097047 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
*
77097110 ATTTAGTAACTCA-CACC
64 ATATAGTAACTCAGCA-C
**
77097127 AATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGAT
1 AATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGAT
* * *
77097191 ATGGTCACTTAGCAC
66 ATAGTAACTCAGCAC
*
77097206 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
77097230 CATCATTCGA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 61 0.68
80 26 0.29
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (80 bp):
AATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGAT
ATAGTAACTCAGCAC
Found at i:77097229 original size:40 final size:40
Alignment explanation
Indices: 77097045--77097229 Score: 209
Period size: 40 Copynumber: 4.7 Consensus size: 40
77097035 GCTACTCGTT
* * *
77097045 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCA
* *
77097085 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCA-CA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACT-AGCA
* *
77097125 CCAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTAGCA
* * *
77097164 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TAGCA
77097205 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
77097230 CATCATTCGA
Statistics
Matches: 122, Mismatches: 15, Indels: 16
0.80 0.10 0.10
Matches are distributed among these distances:
38 2 0.02
39 30 0.25
40 78 0.64
41 12 0.10
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCA
Found at i:77098426 original size:56 final size:56
Alignment explanation
Indices: 77098359--77098478 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
77098349 TATTAGTTTA
77098359 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
*
77098415 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
77098471 TTGCCCAT
1 TTGCCCAT
77098479 CATCCCTTGT
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.23, C:0.23, G:0.09, T:0.45
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:77099357 original size:23 final size:23
Alignment explanation
Indices: 77099331--77099382 Score: 97
Period size: 23 Copynumber: 2.3 Consensus size: 23
77099321 GAATAAATTG
77099331 CATAAATCACATTGTTTTACTAT
1 CATAAATCACATTGTTTTACTAT
77099354 CATAAATCACATTGTTTTACTAT
1 CATAAATCACATTGTTTTACTAT
77099377 C-TAAAT
1 CATAAAT
77099383 TAATAGATTG
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
22 5 0.17
23 24 0.83
ACGTcount: A:0.37, C:0.17, G:0.04, T:0.42
Consensus pattern (23 bp):
CATAAATCACATTGTTTTACTAT
Found at i:77103043 original size:25 final size:24
Alignment explanation
Indices: 77102962--77103095 Score: 83
Period size: 25 Copynumber: 5.4 Consensus size: 24
77102952 ATACCCATAT
*
77102962 CTCGCCACCAAGG-TTTCCCAAATAA
1 CTCGCCA-CAAGGCTTT-ACAAATAA
*
77102987 -TACGCCACATAGGCTTTTCAAATAA
1 CT-CGCCACA-AGGCTTTACAAATAA
* * *
77103012 TTAGCCACAAGGGCATTACAAATAA
1 CTCGCCACAA-GGCTTTACAAATAA
* * *
77103037 CTCGCCATAAAGGCTTTACAGAGAA
1 CTCGCCA-CAAGGCTTTACAAATAA
* ** *
77103062 CTCGCCATAGAGGCTTTGTAGATAA
1 CTCGCCACA-AGGCTTTACAAATAA
77103087 CTCGCCACA
1 CTCGCCACA
77103096 GAAGCTTGAT
Statistics
Matches: 87, Mismatches: 15, Indels: 14
0.75 0.13 0.12
Matches are distributed among these distances:
24 5 0.06
25 76 0.87
26 6 0.07
ACGTcount: A:0.34, C:0.27, G:0.16, T:0.22
Consensus pattern (24 bp):
CTCGCCACAAGGCTTTACAAATAA
Found at i:77103189 original size:25 final size:25
Alignment explanation
Indices: 77103153--77103218 Score: 105
Period size: 25 Copynumber: 2.6 Consensus size: 25
77103143 TTGACAATAT
**
77103153 GGCTTTACAGATAACTTGCCACGGA
1 GGCTTTACAGATAACTTGCCACAAA
*
77103178 GGCTTTATAGATAACTTGCCACAAA
1 GGCTTTACAGATAACTTGCCACAAA
77103203 GGCTTTACAGATAACT
1 GGCTTTACAGATAACT
77103219 CACCATAGAA
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 37 1.00
ACGTcount: A:0.32, C:0.21, G:0.20, T:0.27
Consensus pattern (25 bp):
GGCTTTACAGATAACTTGCCACAAA
Found at i:77113724 original size:46 final size:45
Alignment explanation
Indices: 77113659--77113825 Score: 174
Period size: 46 Copynumber: 3.6 Consensus size: 45
77113649 GTGCCGATAC
*
77113659 CATGTCCCAGACTTGTCTTACACTGGCT-TACATCTCGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTGGCTCT-CATCT-GAGGCCGATG
* * * * * * * *
77113705 CATATTCCAGACATATCTTACACTAGCTCTCGTCTAAATGTCGATG
1 CATGTCCCAGACATGTCTTACACTGGCTCTCATCT-GAGGCCGATG
* *
77113751 CCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCGATG
1 -CATGTCCCAGACAT-GTCTTACACTGGCTCTCAT-CTGAGGCCGATG
77113799 CATGTCCCAGACATGTCTTACACTGGC
1 CATGTCCCAGACATGTCTTACACTGGC
77113826 ACACAAATAA
Statistics
Matches: 97, Mismatches: 20, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
46 47 0.48
47 27 0.28
48 22 0.23
49 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (45 bp):
CATGTCCCAGACATGTCTTACACTGGCTCTCATCTGAGGCCGATG
Found at i:77113795 original size:94 final size:93
Alignment explanation
Indices: 77113653--77113822 Score: 236
Period size: 94 Copynumber: 1.8 Consensus size: 93
77113643 ATATCCGTGC
* * *
77113653 CGATACCATGTCCCAGACTTGTCTTACACTGGCTTACATCTCGAGGCCGATGCATATTCCAGACA
1 CGATACCATGTCCCAGACTGGTCTTACACTGGCTTACATATCGAGGCCGATGCATATCCCAGACA
77113718 TATCTTACACTAGCTCTCGTCTAAATGT
66 TATCTTACACTAGCTCTCGTCTAAATGT
* * *
77113746 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCT-CATAAT-GTGGCCGATGCATGTCCCAG
1 CGATACCATGTCCCAGAC-TGGTCTTACACTGGCT-TACAT-ATCGAGGCCGATGCATATCCCAG
*
77113809 ACATGTCTTACACT
63 ACATATCTTACACT
77113823 GGCACACAAA
Statistics
Matches: 67, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
93 17 0.25
94 48 0.72
95 2 0.03
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (93 bp):
CGATACCATGTCCCAGACTGGTCTTACACTGGCTTACATATCGAGGCCGATGCATATCCCAGACA
TATCTTACACTAGCTCTCGTCTAAATGT
Found at i:77113803 original size:47 final size:48
Alignment explanation
Indices: 77113504--77113825 Score: 192
Period size: 47 Copynumber: 6.8 Consensus size: 48
77113494 TTGGGTATAA
* *
77113504 TGCCGATGCCATGTCCTAGACATGGTCTTACACTAGCTCATCCATCAA--G
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTC-T-CAT-AATCG
* * * * *
77113553 T--CGATGCCATTTCCTAAACATGGTCTTACACTGACTTTCGA-AATCAAG
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTC-ATAATC--G
* * * * ** *
77113601 -GCAGACGCCATGTGCCAAACATGGTCTTACACTACCTCTCACATATCCG
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATA-AT-CG
* * *
77113650 TGCCGATACCATGTCCCAGAC-TTGTCTTACACTGGCT-TACAT-CTCG
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCT-CATAATCG
* * * * * *
77113696 AGGCCGATG-CATATTCCAGACAT-ATCTTACACTAGCTCTCGTCTAAAT-G
1 -TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTC--AT-AATCG
77113745 T--CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT-G
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATCG
77113790 TGGCCGATG-CATGTCCCAGACAT-GTCTTACACTGGC
1 T-GCCGATGCCATGTCCCAGACATGGTCTTACACTGGC
77113826 ACACAAATAA
Statistics
Matches: 212, Mismatches: 37, Indels: 51
0.71 0.12 0.17
Matches are distributed among these distances:
44 2 0.01
45 6 0.03
46 46 0.22
47 66 0.31
48 24 0.11
49 49 0.23
50 18 0.08
51 1 0.00
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.28
Consensus pattern (48 bp):
TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATCG
Found at i:77120375 original size:47 final size:47
Alignment explanation
Indices: 77120189--77120358 Score: 295
Period size: 47 Copynumber: 3.6 Consensus size: 47
77120179 GCATTGGAAC
*
77120189 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGAAATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGACATTTGG
* *
77120236 TAATACAAGGATACCATGTAAGAACATGTTTGGAACATGACATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGACATTTGG
77120283 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGACATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGACATTTGG
* *
77120330 TAAGATAAGGATATCATGTAAGACCATGT
1 TAAGACAAGGATACCATGTAAGACCATGT
77120359 GTGACAACCC
Statistics
Matches: 116, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 116 1.00
ACGTcount: A:0.38, C:0.13, G:0.22, T:0.26
Consensus pattern (47 bp):
TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGACATTTGG
Found at i:77122019 original size:40 final size:40
Alignment explanation
Indices: 77121964--77122254 Score: 324
Period size: 40 Copynumber: 7.3 Consensus size: 40
77121954 ATTTGAATGA
* *
77121964 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTT
* *
77122004 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTT
* * *
77122044 TATCCGGGCTAAGAGCCGAAGGCATTTGTG-TGAGTTG-CTA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCT-AG-TGATTT
* * *
77122084 TACCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATTT
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTT
* *
77122124 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-TA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTT
*
77122164 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGT--TTCT
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT-T
* * * * * *
77122203 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTA
1 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTT
77122244 TATCC-GGCTAA
1 TATCCGGGCTAA
77122255 ATTCCGAAGA
Statistics
Matches: 216, Mismatches: 25, Indels: 21
0.82 0.10 0.08
Matches are distributed among these distances:
38 1 0.00
39 9 0.04
40 198 0.92
41 6 0.03
42 2 0.01
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTT
Found at i:77122183 original size:120 final size:120
Alignment explanation
Indices: 77121967--77122254 Score: 427
Period size: 120 Copynumber: 2.4 Consensus size: 120
77121957 TGAATGATAT
* * * * *
77121967 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTTTATCCGGGCTAAGTCCCGAAGGCATTTA
1 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATTTA
* * * *
77122032 TGCTAGTGATTTTATCCGGGCTAAGAGCCGAAGGCATTTGTGTGAGTTGCTATAC
66 TGCGAGTGATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
*
77122087 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATTTG
1 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATTTA
*
77122152 TGCGAGTTGA-TATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTTCTATAC
66 TGCGAG-TGATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
* * *
77122207 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATATCC-GGCTAA
1 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAA
77122255 ATTCCGAAGA
Statistics
Matches: 153, Mismatches: 14, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
119 6 0.04
120 144 0.94
121 3 0.02
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.28
Consensus pattern (120 bp):
CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATTTA
TGCGAGTGATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
Found at i:77125948 original size:55 final size:54
Alignment explanation
Indices: 77125840--77126229 Score: 272
Period size: 55 Copynumber: 7.4 Consensus size: 54
77125830 GGGGTGTTAC
* * * * * *
77125840 ACCATGCCAAGGCATGGCATTGATAAGTT-CTATAAGGAACGGGAATCATGTAAG
1 ACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGAA-AGGTACCATGTAAG
*
77125894 ACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGAAAAGGTCCCATGTAAG
1 ACCATGTCAAGACATGGCATTGATGAGTTACTATAAGG-AAAGGTACCATGTAAG
* * * *
77125949 ACCATGCCAAGGCATGGCATTGGTGAGTT-C-ATAA-GACAAGCATACCATGTAAG
1 ACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGA-AAG-GTACCATGTAAG
*** ** ** *
77126002 ACCATGTTTGGAACATGGCATT--TG-G-TAAGATAAGG--A--TTTCATGTAAA
1 ACCATGTCAAG-ACATGGCATTGATGAGTTACTATAAGGAAAGGTACCATGTAAG
* * ** * * * * *
77126049 ACCATGCCAAGGCATGTAATTGATAAGTTA-TATTAGGCAAGGAAATCATGTAAG
1 ACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGAAAGG-TACCATGTAAG
* *
77126103 ACCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTCCCATGTAAG
1 ACCATGTCAAGACATGGCATTGATGAGTTACTATAAGG-AAAGGTACCATGTAAG
* * * *
77126158 ACCATG-CTAAGGCATGGCATTGGTGAGTT-C-ATAAGGCAAGGATACCACGTAAG
1 ACCATGTC-AAGACATGGCATTGATGAGTTACTATAAGGAAAGG-TACCATGTAAG
*
77126211 ACTATGTCAAGACATGGCA
1 ACCATGTCAAGACATGGCA
77126230 ATGGTAAGTT
Statistics
Matches: 263, Mismatches: 51, Indels: 45
0.73 0.14 0.13
Matches are distributed among these distances:
46 7 0.03
47 15 0.06
48 1 0.00
49 6 0.02
50 4 0.02
51 3 0.01
52 14 0.05
53 52 0.20
54 73 0.28
55 82 0.31
56 6 0.02
ACGTcount: A:0.35, C:0.17, G:0.24, T:0.24
Consensus pattern (54 bp):
ACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGAAAGGTACCATGTAAG
Found at i:77126118 original size:100 final size:100
Alignment explanation
Indices: 77125941--77126123 Score: 226
Period size: 100 Copynumber: 1.8 Consensus size: 100
77125931 GAAAAGGTCC
* * * * *
77125941 CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGACAAGCATACCATGTAAGACCA
1 CATGTAAAACCATGCCAAGGCATGGAATTGATAAGTTCATAAGACAAGCAAACCATGTAAGACCA
***
77126006 TGTTTGGAACATGGCATTTGGTAAGATAAGGATTT
66 TGTCAAGAACATGGCATTTGGTAAGATAAGGATTT
* * * *
77126041 CATGTAAAACCATGCCAAGGCATGTAATTGATAAGTT-ATATTAGGCAAGGAAATCATGTAAGAC
1 CATGTAAAACCATGCCAAGGCATGGAATTGATAAGTTCATA--AGACAAGCAAACCATGTAAGAC
77126105 CATGTCAAG-ACATGGCATT
64 CATGTCAAGAACATGGCATT
77126124 GATAAGTTAC
Statistics
Matches: 69, Mismatches: 12, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
99 3 0.04
100 42 0.61
101 24 0.35
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.26
Consensus pattern (100 bp):
CATGTAAAACCATGCCAAGGCATGGAATTGATAAGTTCATAAGACAAGCAAACCATGTAAGACCA
TGTCAAGAACATGGCATTTGGTAAGATAAGGATTT
Found at i:77126212 original size:209 final size:209
Alignment explanation
Indices: 77125840--77126217 Score: 632
Period size: 209 Copynumber: 1.8 Consensus size: 209
77125830 GGGGTGTTAC
* * *
77125840 ACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGAACGGGAATCATGTAAGACCATGTCAAG
1 ACCATGCCAAGGCATGGAATTGATAAGTTATATAAGGAACGGAAATCATGTAAGACCATGTCAAG
*
77125905 ACATGGCATTGATGAGTTACTATAAGGAAAAGGTCCCATGTAAGACCATGCCAAGGCATGGCATT
66 ACATGGCATTGATAAGTTACTATAAGGAAAAGGTCCCATGTAAGACCATGCCAAGGCATGGCATT
*
77125970 GGTGAGTTCATAAGACAAGCATACCATGTAAGACCATGTTTGGAACATGGCATTTGGTAAGATAA
131 GGTGAGTTCATAAGACAAGCATACCACGTAAGACCATGTTTGGAACATGGCATTTGGTAAGATAA
77126035 GGATTTCATGTAAA
196 GGATTTCATGTAAA
* *
77126049 ACCATGCCAAGGCATGTAATTGATAAGTTATATTAGGCAA-GGAAATCATGTAAGACCATGTCAA
1 ACCATGCCAAGGCATGGAATTGATAAGTTATATAAGG-AACGGAAATCATGTAAGACCATGTCAA
* *
77126113 GACATGGCATTGATAAGTTACTATAAGGCAAAGGTCCCATGTAAGACCATGCTAAGGCATGGCAT
65 GACATGGCATTGATAAGTTACTATAAGGAAAAGGTCCCATGTAAGACCATGCCAAGGCATGGCAT
* * *
77126178 TGGTGAGTTCATAAGGCAAGGATACCACGTAAGACTATGT
130 TGGTGAGTTCATAAGACAAGCATACCACGTAAGACCATGT
77126218 CAAGACATGG
Statistics
Matches: 156, Mismatches: 12, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
209 154 0.99
210 2 0.01
ACGTcount: A:0.35, C:0.16, G:0.24, T:0.24
Consensus pattern (209 bp):
ACCATGCCAAGGCATGGAATTGATAAGTTATATAAGGAACGGAAATCATGTAAGACCATGTCAAG
ACATGGCATTGATAAGTTACTATAAGGAAAAGGTCCCATGTAAGACCATGCCAAGGCATGGCATT
GGTGAGTTCATAAGACAAGCATACCACGTAAGACCATGTTTGGAACATGGCATTTGGTAAGATAA
GGATTTCATGTAAA
Found at i:77126219 original size:108 final size:108
Alignment explanation
Indices: 77126041--77126239 Score: 265
Period size: 108 Copynumber: 1.8 Consensus size: 108
77126031 ATAAGGATTT
* * *
77126041 CATGTAAAACCATGCCAAGGCATGTAATTGATAAGTTATATTAGGCAAGGAAATCATGTAAGACC
1 CATGTAAAACCATGCCAAGGCATGGAATTGATAAGTTATA-TAGGCAAGGAAACCACGTAAGACC
*
77126106 ATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTCC
65 ATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTCC
* * * * * * *
77126150 CATGTAAGACCATGCTAAGGCATGGCATTGGTGAGTTCATA-AGGCAAGGATACCACGTAAGACT
1 CATGTAAAACCATGCCAAGGCATGGAATTGATAAGTT-ATATAGGCAAGGAAACCACGTAAGACC
*
77126214 ATGTCAAGACATGGCAATGGTAAGTT
65 ATGTCAAGACATGGCAATGATAAGTT
77126240 CAAAAAGGAA
Statistics
Matches: 77, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
108 43 0.56
109 31 0.40
110 3 0.04
ACGTcount: A:0.36, C:0.16, G:0.24, T:0.24
Consensus pattern (108 bp):
CATGTAAAACCATGCCAAGGCATGGAATTGATAAGTTATATAGGCAAGGAAACCACGTAAGACCA
TGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTCC
Found at i:77129249 original size:21 final size:21
Alignment explanation
Indices: 77129223--77129270 Score: 69
Period size: 21 Copynumber: 2.3 Consensus size: 21
77129213 GGCACACGCT
* *
77129223 CGTGTGAAAGGGCACCACACC
1 CGTGTGAAAGGACAACACACC
*
77129244 CGTGTGAAAGGACAATACACC
1 CGTGTGAAAGGACAACACACC
77129265 CGTGTG
1 CGTGTG
77129271 GTCATTATAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.29, C:0.27, G:0.29, T:0.15
Consensus pattern (21 bp):
CGTGTGAAAGGACAACACACC
Found at i:77129497 original size:15 final size:15
Alignment explanation
Indices: 77129477--77129507 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
77129467 GTCTAAAAAC
*
77129477 CATGACATTTTGTTT
1 CATGACATTCTGTTT
77129492 CATGACATTCTGTTT
1 CATGACATTCTGTTT
77129507 C
1 C
77129508 TGATGCCAGC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.19, C:0.19, G:0.13, T:0.48
Consensus pattern (15 bp):
CATGACATTCTGTTT
Found at i:77130628 original size:49 final size:50
Alignment explanation
Indices: 77130458--77130686 Score: 201
Period size: 49 Copynumber: 4.8 Consensus size: 50
77130448 GGTATAATGC
* *
77130458 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATC-C--ATCAAGTT
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTC-TCACATATCGAGTT
* * * * * **
77130506 -GATGCCATGTCCTAAACATGGTCTTACACTAACTATCA-AAATCGAGAC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACATATCGAGTT
* * * *
77130554 CAACGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACATATCCATTT
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACATATCGAGTT
* * * *
77130604 CGATGCCATGTCCCAAACAT-GTCTTACACTGGCT-T-ACATCTCGAG-G
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACATATCGAGTT
*
77130650 CTGATG-CATGTCCCAGACAT-GTGTTACACTAGCTCTC
1 C-GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTC
77130687 GTCTCAATAA
Statistics
Matches: 143, Mismatches: 30, Indels: 16
0.76 0.16 0.08
Matches are distributed among these distances:
46 28 0.20
47 42 0.29
48 6 0.04
49 45 0.31
50 22 0.15
ACGTcount: A:0.26, C:0.30, G:0.17, T:0.27
Consensus pattern (50 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACATATCGAGTT
Found at i:77130660 original size:96 final size:95
Alignment explanation
Indices: 77130457--77130686 Score: 254
Period size: 96 Copynumber: 2.4 Consensus size: 95
77130447 GGGTATAATG
* *
77130457 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCCATCAAGTTGATGCCATGTCCTAAA
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTC-TCCATCAAGTTGATGCCATGTCCCAAA
77130522 CATGGTCTTACACTAACTATCAAAATCGAGA
65 CATGGTCTTACACTAACTATCAAAATCGAGA
* * * *
77130553 CCAACGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACATATCCATTTCGATGCCATGTCCC
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTC-C--ATCAAGTT-GATGCCATGTCCC
** ** *
77130618 AAACAT-GTCTTACACTGGCT-T-ACATCTCGAGG
62 AAACATGGTCTTACACTAACTATCA-AAATCGAGA
* *
77130650 CTGATG-CATGTCCCAGACAT-GTGTTACACTAGCTCTC
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTC
77130687 GTCTCAATAA
Statistics
Matches: 114, Mismatches: 15, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
95 18 0.16
96 50 0.44
97 10 0.09
98 18 0.16
99 18 0.16
ACGTcount: A:0.26, C:0.30, G:0.17, T:0.27
Consensus pattern (95 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCCATCAAGTTGATGCCATGTCCCAAAC
ATGGTCTTACACTAACTATCAAAATCGAGA
Found at i:77130670 original size:46 final size:49
Alignment explanation
Indices: 77130458--77130734 Score: 173
Period size: 49 Copynumber: 5.7 Consensus size: 49
77130448 GGTATAATGC
* *
77130458 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATC-C--ATCAAG-T
1 CGATGCCATGTCCCAGACAT-GTCTTACACTAGCTC-TCACATATCCAGCT
* * * * * * *
77130505 TGATGCCATGTCCTAAACATGGTCTTACACTAACTATCA-AAATCGAGAC-
1 CGATGCCATGTCCCAGACAT-GTCTTACACTAGCTCTCACATATCCAG-CT
* * **
77130554 CAACGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACATATCCATTT
1 CGATGCCATGTCCCAGACAT-GTCTTACACTAGCTCTCACATATCCAGCT
* * * *
77130604 CGATGCCATGTCCCAAACATGTCTTACACTGGCT-T-ACATCTCGAGGCT
1 CGATGCCATGTCCCAGACATGTCTTACACTAGCTCTCACATATCCA-GCT
* * ***
77130652 -GATG-CATGTCCCAGACATGTGTTACACTAGCTCTCGTCTCAATAATGTGGC-
1 CGATGCCATGTCCCAGACATGTCTTACACTAG--CTC-TCAC-AT-ATCCAGCT
77130703 CGATG-CATGTCCCAGACATGTCTTACACTAGC
1 CGATGCCATGTCCCAGACATGTCTTACACTAGC
77130735 ACACAAATAA
Statistics
Matches: 179, Mismatches: 35, Indels: 29
0.74 0.14 0.12
Matches are distributed among these distances:
46 25 0.14
47 41 0.23
48 9 0.05
49 45 0.25
50 24 0.13
51 1 0.01
52 33 0.18
53 1 0.01
ACGTcount: A:0.26, C:0.30, G:0.17, T:0.27
Consensus pattern (49 bp):
CGATGCCATGTCCCAGACATGTCTTACACTAGCTCTCACATATCCAGCT
Found at i:77135317 original size:16 final size:17
Alignment explanation
Indices: 77135288--77135319 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
77135278 AATTGCAATC
77135288 ATGCCATACTTTATACA
1 ATGCCATACTTTATACA
77135305 ATGCCAT-CTTTATAC
1 ATGCCATACTTTATAC
77135320 TCATAAGATA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.31, C:0.25, G:0.06, T:0.38
Consensus pattern (17 bp):
ATGCCATACTTTATACA
Found at i:77139193 original size:27 final size:27
Alignment explanation
Indices: 77139145--77139303 Score: 166
Period size: 27 Copynumber: 5.9 Consensus size: 27
77139135 GCGAGGCTGC
* *
77139145 CAGATATTGTGAC-GAAGTCACCAGATA
1 CAGATATTGTGGCAG-AGCCACCAGATA
77139172 CAGATATTGTGGCAGAGCCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
*
77139198 TAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* * *
77139225 CAAATAATTGTGGCATAGCCACCAG-GA
1 CAGAT-ATTGTGGCAGAGCCACCAGATA
*
77139252 CAGATATATATGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
*
77139279 CAGATAATTGTGGCATAGCCACCAG
1 CAGAT-ATTGTGGCAGAGCCACCAG
77139304 GACGCTTCCT
Statistics
Matches: 111, Mismatches: 13, Indels: 16
0.79 0.09 0.11
Matches are distributed among these distances:
26 9 0.08
27 97 0.87
28 5 0.05
ACGTcount: A:0.35, C:0.21, G:0.24, T:0.19
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:77139304 original size:54 final size:54
Alignment explanation
Indices: 77139163--77139306 Score: 227
Period size: 54 Copynumber: 2.7 Consensus size: 54
77139153 GTGACGAAGT
* * * *
77139163 CACCAGATACAGAT-ATTGTGGCAGAGCCACCAGAATAGATATATGTGGCAGAGC
1 CACCAGAT-CAGATAATTGTGGCATAGCCACCAGGACAGATATATATGGCAGAGC
*
77139217 CACCAGATCAAATAATTGTGGCATAGCCACCAGGACAGATATATATGGCAGAGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATATGGCAGAGC
77139271 CACCAGATCAGATAATTGTGGCATAGCCACCAGGAC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGGAC
77139307 GCTTCCTCCA
Statistics
Matches: 83, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
53 4 0.05
54 79 0.95
ACGTcount: A:0.35, C:0.23, G:0.24, T:0.18
Consensus pattern (54 bp):
CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATATGGCAGAGC
Found at i:77140930 original size:26 final size:26
Alignment explanation
Indices: 77140900--77140981 Score: 137
Period size: 26 Copynumber: 3.2 Consensus size: 26
77140890 TTAAATGCCC
*
77140900 ATCATGGAACATTTATCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
77140926 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
77140952 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
77140978 ATCA
1 ATCA
77140982 ATTTGTACCA
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.35, C:0.23, G:0.07, T:0.34
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:77144186 original size:53 final size:54
Alignment explanation
Indices: 77144129--77144336 Score: 197
Period size: 53 Copynumber: 3.9 Consensus size: 54
77144119 TTTCGTTTTT
* * * *
77144129 GAACTTACCATTGCCAT-CTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-
1 GAACTCACCAATGCCATGC-CTTGACATGGTCTTACATGATATCCTTGCCTTATA
* **
77144182 GAACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATA
1 GAACTCACCAATGCCATGCCTTGACATGGTCTTACATGATATCC-TTGCCTTATA
* ** * * * * *
77144236 GTAACTCATCAATGCCATATCTAGACTTGGGCTTACATGATTTCCTTACCTTATA
1 G-AACTCACCAATGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTATA
* * * *
77144291 GGACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTT
1 GAACTCACCAATGCCATGCCTTGACATGGTCTTACATGATATCCTT
77144337 ATCTTACCAA
Statistics
Matches: 125, Mismatches: 25, Indels: 9
0.79 0.16 0.06
Matches are distributed among these distances:
52 2 0.02
53 43 0.34
54 38 0.30
55 40 0.32
56 2 0.02
ACGTcount: A:0.23, C:0.25, G:0.17, T:0.35
Consensus pattern (54 bp):
GAACTCACCAATGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTATA
Found at i:77144370 original size:47 final size:47
Alignment explanation
Indices: 77144315--77144436 Score: 226
Period size: 47 Copynumber: 2.6 Consensus size: 47
77144305 CATGCCTTGG
* *
77144315 CATGGTCTTACATGATATCCTTATCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
77144362 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
77144409 CATGGTCTTACATGGTATCCTTGTCTTA
1 CATGGTCTTACATGGTATCCTTGTCTTA
77144437 GTGCCAATGC
Statistics
Matches: 73, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 73 1.00
ACGTcount: A:0.25, C:0.25, G:0.14, T:0.36
Consensus pattern (47 bp):
CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
Found at i:77151823 original size:29 final size:27
Alignment explanation
Indices: 77151805--77151874 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
77151795 ATATTAAGTC
77151805 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATATAATCAACT
*
77151832 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
*
77151860 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
77151875 GTACAATTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (27 bp):
CGCACACTCAGTGCTATATAATCAACT
Found at i:77151868 original size:28 final size:28
Alignment explanation
Indices: 77151805--77151902 Score: 135
Period size: 28 Copynumber: 3.5 Consensus size: 28
77151795 ATATTAAGTC
*
77151805 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
77151832 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
77151860 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
77151889 CGCACACTTAGTGC
1 CGCACACTTAGTGC
77151903 CAATCTCATG
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.34
28 23 0.36
29 19 0.30
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:77162520 original size:29 final size:27
Alignment explanation
Indices: 77162502--77162571 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
77162492 ATATTAAGTC
77162502 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATATAATCAACT
*
77162529 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
*
77162557 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
77162572 GTACAATTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (27 bp):
CGCACACTCAGTGCTATATAATCAACT
Found at i:77162565 original size:28 final size:28
Alignment explanation
Indices: 77162502--77162599 Score: 135
Period size: 28 Copynumber: 3.5 Consensus size: 28
77162492 ATATTAAGTC
*
77162502 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
77162529 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
77162557 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
77162586 CGCACACTTAGTGC
1 CGCACACTTAGTGC
77162600 CAATCTCATG
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.34
28 23 0.36
29 19 0.30
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:77165848 original size:51 final size:51
Alignment explanation
Indices: 77165793--77165895 Score: 206
Period size: 51 Copynumber: 2.0 Consensus size: 51
77165783 GTGAAAGAAG
77165793 TAAGCTTATAAAACTTAGTAAGTTCACATGTAAAATAATAAGCATTAGCAA
1 TAAGCTTATAAAACTTAGTAAGTTCACATGTAAAATAATAAGCATTAGCAA
77165844 TAAGCTTATAAAACTTAGTAAGTTCACATGTAAAATAATAAGCATTAGCAA
1 TAAGCTTATAAAACTTAGTAAGTTCACATGTAAAATAATAAGCATTAGCAA
77165895 T
1 T
77165896 CAATTTAGCT
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 52 1.00
ACGTcount: A:0.47, C:0.12, G:0.12, T:0.30
Consensus pattern (51 bp):
TAAGCTTATAAAACTTAGTAAGTTCACATGTAAAATAATAAGCATTAGCAA
Done.