Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 235 of 349
Found at i:77464952 original size:176 final size:175
Alignment explanation
Indices: 77464758--77465127 Score: 482
Period size: 174 Copynumber: 2.1 Consensus size: 175
77464748 AAGTTGGTTT
* * * ** *
77464758 TTGACAAACAGTAATTGAAAATACCTCAGCATATGAGTCGAGGCTCAACTCACCTCTCGCAATAT
1 TTGAAAAACAGAAATTGAAAATACCTCA--ACATGACCCGAGGCTCAACTCACCTCTCACAATAT
* * *
77464823 GAGTTGA-TTTTTGGAAAGTAGAAATT-AAAG-ACAGAAATTGAAATTACCTCA-CGTGTCCTGA
64 GAGTTGATTTTTTGGAAA-CAGAAATTGAAAGAACAGAAATTGAAATTACCTCAGCGTGCCCCGA
*
77464884 GGCTCAACTCACCTCTTGCAATATGAATTGATTTTTTTGAAAAGCAGAAA
128 GGCTCAACTCACCTCTCGCAATATGAATTGA--TTTTTGAAAAGCAGAAA
* * * *
77464934 TTGAAAAACAGAAATTGAAATTACCTCAACATGCCCCTAGGCTCAACTCATCTCTCACAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACATGACCCGAGGCTCAACTCACCTCTCACAATATGA
* *
77464999 GTTGATTTTTTTGAAACATAAATTGAAAGAACAGAAATTGAAATTACCTCAGCGTGCCCCGAGGC
66 GTTGATTTTTTGGAAACAGAAATTGAAAGAACAGAAATTGAAATTACCTCAGCGTGCCCCGAGGC
* * *
77465064 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAGTATAAA
131 TCAACTCACCTCTCGCAATATGAATTGATTTTTGAAAAGCAGAAA
77465109 TT-AAAAACAGAAATT-AAAA
1 TTGAAAAACAGAAATTGAAAA
77465128 GGCTCAACTC
Statistics
Matches: 170, Mismatches: 20, Indels: 11
0.85 0.10 0.05
Matches are distributed among these distances:
173 3 0.02
174 54 0.32
175 30 0.18
176 46 0.27
177 37 0.22
ACGTcount: A:0.38, C:0.19, G:0.16, T:0.28
Consensus pattern (175 bp):
TTGAAAAACAGAAATTGAAAATACCTCAACATGACCCGAGGCTCAACTCACCTCTCACAATATGA
GTTGATTTTTTGGAAACAGAAATTGAAAGAACAGAAATTGAAATTACCTCAGCGTGCCCCGAGGC
TCAACTCACCTCTCGCAATATGAATTGATTTTTGAAAAGCAGAAA
Found at i:77465108 original size:88 final size:86
Alignment explanation
Indices: 77464796--77465123 Score: 439
Period size: 88 Copynumber: 3.8 Consensus size: 86
77464786 GCATATGAGT
* * *
77464796 CGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGGAAAGTAGAAATTAAAGACAGAAA
1 CGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAGCAGAAATTAAAAACAGAAA
*
77464860 TTGAAATTACCTCACGTGTCC
66 TTGAAATTACCTCACGTGCCC
* * *
77464881 TGAGGCTCAACTCACCTCTTGCAATATGAATTGATTTTTTTGAAAAGCAGAAATTGAAAAACAGA
1 CGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAAAGCAGAAATT-AAAAACAGA
*
77464946 AATTGAAATTACCTCAACATGCCC
64 AATTGAAATTACCTC-ACGTGCCC
* * * *
77464970 CTAGGCTCAACTCATCTCTCACAATATGAGTTGATTTTTTTG-AAA-CATAAATTGAAAGAACAG
1 CGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAAAGCAGAAATT-AAA-AACAG
77465033 AAATTGAAATTACCTCAGCGTGCCC
63 AAATTGAAATTACCTCA-CGTGCCC
* *
77465058 CGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAAGTATAAATTAAAAACAGAAA
1 CGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAGCAGAAATTAAAAACAGAAA
77465122 TT
66 TT
77465124 AAAAGGCTCA
Statistics
Matches: 215, Mismatches: 20, Indels: 15
0.86 0.08 0.06
Matches are distributed among these distances:
85 31 0.14
86 16 0.07
87 35 0.16
88 91 0.42
89 42 0.20
ACGTcount: A:0.37, C:0.19, G:0.16, T:0.28
Consensus pattern (86 bp):
CGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAGCAGAAATTAAAAACAGAAA
TTGAAATTACCTCACGTGCCC
Found at i:77465117 original size:174 final size:173
Alignment explanation
Indices: 77464798--77465123 Score: 487
Period size: 174 Copynumber: 1.9 Consensus size: 173
77464788 ATATGAGTCG
* *
77464798 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGGAAAGTAGAAATTAAAGACAGAAATTG
1 AGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTGGAAAGCAGAAATTAAAGACAGAAATTG
* * *
77464863 AAATTACCTCACGTGTCCTGAGGCTCAACTCACCTCTTGCAATATGAATTGATTTTTTTGAAAAG
66 AAATTACCTCACGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAATTGA-TTTTTTGAAAAG
77464928 CAGAAATTGAAAAACAGAAATTGAAATTACCTCAACATGCCCCT
130 CAGAAATTGAAAAACAGAAATTGAAATTACCTCAACATGCCCCT
* * *
77464972 AGGCTCAACTCATCTCTCACAATATGAGTTGATTTTTTTGAAA-CATAAATTGAAAGAACAGAAA
1 AGGCTCAACTCACCTCTCACAATATGAGTTGA-TTTTTGGAAAGCAGAAATT-AAAG-ACAGAAA
*
77465036 TTGAAATTACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAA
63 TTGAAATTACCTCA-CGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAATTGATTTTTTGAA
* *
77465100 AAGTATAAATT-AAAAACAGAAATT
127 AAGCAGAAATTGAAAAACAGAAATT
77465124 AAAAGGCTCA
Statistics
Matches: 137, Mismatches: 11, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
174 49 0.36
175 30 0.22
176 21 0.15
177 37 0.27
ACGTcount: A:0.37, C:0.19, G:0.16, T:0.29
Consensus pattern (173 bp):
AGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTGGAAAGCAGAAATTAAAGACAGAAATTG
AAATTACCTCACGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAATTGATTTTTTGAAAAGC
AGAAATTGAAAAACAGAAATTGAAATTACCTCAACATGCCCCT
Found at i:77466018 original size:39 final size:39
Alignment explanation
Indices: 77465959--77466036 Score: 113
Period size: 39 Copynumber: 2.0 Consensus size: 39
77465949 TGCGTTAATC
*
77465959 AAGACGCCCTTTTTGGGTTTTCACCTTGATCTTT-TTTTT
1 AAGACGCCCTTTTCGGGTTTTCACCTTGAT-TTTCTTTTT
* *
77465998 AAGATGCCCTTTTCGGGTTTTCATCTTGATTTTCTTTTT
1 AAGACGCCCTTTTCGGGTTTTCACCTTGATTTTCTTTTT
77466037 CTTCAAGCAT
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
38 3 0.09
39 32 0.91
ACGTcount: A:0.13, C:0.19, G:0.15, T:0.53
Consensus pattern (39 bp):
AAGACGCCCTTTTCGGGTTTTCACCTTGATTTTCTTTTT
Found at i:77477732 original size:30 final size:30
Alignment explanation
Indices: 77477697--77477756 Score: 79
Period size: 30 Copynumber: 2.0 Consensus size: 30
77477687 AAAAAAACTA
77477697 ATAATAT-TGAAAAAAT-ATATATATATATAC
1 ATAATATAT-AAAAAATCATATATA-ATATAC
77477727 ATAATATATAAAAAATGCATATATAATATA
1 ATAATATATAAAAAAT-CATATATAATATA
77477757 ACATCAAAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
30 14 0.52
31 6 0.22
32 7 0.26
ACGTcount: A:0.58, C:0.03, G:0.03, T:0.35
Consensus pattern (30 bp):
ATAATATATAAAAAATCATATATAATATAC
Found at i:77480437 original size:47 final size:48
Alignment explanation
Indices: 77480367--77480498 Score: 196
Period size: 47 Copynumber: 2.8 Consensus size: 48
77480357 CACAATCGAT
*
77480367 AAGTACCTATACCATGGCTCGTAGCCAAATCAAGGTAACAT-ATC-CAG
1 AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAAC-TCATCTCAG
* * *
77480414 GAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCCTCTCTG
1 AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCATCTCAG
*
77480462 AAATACCTATACCATGGCCCGTAGCCAAATCAAGGTA
1 AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTA
77480499 TCATTCGCAC
Statistics
Matches: 77, Mismatches: 6, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
46 1 0.01
47 39 0.51
48 37 0.48
ACGTcount: A:0.33, C:0.28, G:0.17, T:0.21
Consensus pattern (48 bp):
AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCATCTCAG
Found at i:77484298 original size:40 final size:40
Alignment explanation
Indices: 77484243--77484445 Score: 209
Period size: 40 Copynumber: 5.1 Consensus size: 40
77484233 CGGAATTTAA
* * ** *
77484243 CCGGATATAGCAACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
77484283 CCGGTTATAGTAACTCGCACAAATACCTTCGGGACTTAAC
1 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
77484323 CCGGATT-TAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
77484362 CCGG-AATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGTTA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
** * *
77484402 CCGAATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGTTATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
77484442 CCGG
1 CCGG
77484446 ACATCATTCG
Statistics
Matches: 136, Mismatches: 19, Indels: 16
0.80 0.11 0.09
Matches are distributed among these distances:
38 2 0.01
39 31 0.23
40 89 0.65
41 14 0.10
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:77484373 original size:79 final size:80
Alignment explanation
Indices: 77484227--77484446 Score: 234
Period size: 79 Copynumber: 2.8 Consensus size: 80
77484217 CCGAATCACG
* * * ** * * *
77484227 TACCTTCGGAATTTAACCGGATATAGCAACTCGTTCAAATGCCTTCGGGACATAGCCCGG-TTAT
1 TACCTTCGGGACTTAACCGGATATAGTAACTCGCACCAATGCCTTCGGGACTTAGCCCGGAATAT
77484291 AGTAACTCGCACAAA
66 AGTAACTCGCACAAA
*
77484306 TACCTTCGGGACTTAACCCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGCCCGGAAT-
1 TACCTTCGGGACTTAA-CCGGATATAGTAACTCGCACCAATGCCTTCGGGACTTAGCCCGGAATA
77484369 TAGTAACTCGCACAAA
65 TAGTAACTCGCACAAA
* * * * * *
77484385 TGCCTTC-GGATCTTAGTCCGAATATAGTCACTTAGCA-CAAAGCCTTCGGGACTTAGCCCGGA
1 TACCTTCGGGA-CTTA-ACCGGATATAGTAAC-TCGCACCAATGCCTTCGGGACTTAGCCCGGA
77484447 CATCATTCGA
Statistics
Matches: 119, Mismatches: 16, Indels: 11
0.82 0.11 0.08
Matches are distributed among these distances:
78 3 0.03
79 72 0.61
80 44 0.37
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.25
Consensus pattern (80 bp):
TACCTTCGGGACTTAACCGGATATAGTAACTCGCACCAATGCCTTCGGGACTTAGCCCGGAATAT
AGTAACTCGCACAAA
Found at i:77487493 original size:40 final size:40
Alignment explanation
Indices: 77487448--77487639 Score: 213
Period size: 40 Copynumber: 4.8 Consensus size: 40
77487438 TATAACCACA
** *
77487448 AGCACAAATGCCTTCGGGTCTTAGCCCGGATTTAGTAACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATAACT
* * * * *
77487488 CGCACAAATGCCTTCGGATCTTAGTCCAGATAAAATCACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATAACT
* * * * **
77487528 AGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATAACT
* *
77487568 CGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATCACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATAACT
* * *
77487608 AGCACAATTGCATTCGGGACTTAGCCCGGATA
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATA
77487640 TCATTCAAAT
Statistics
Matches: 121, Mismatches: 31, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
40 121 1.00
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
AGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATAACT
Found at i:77487581 original size:80 final size:80
Alignment explanation
Indices: 77487448--77487640 Score: 296
Period size: 80 Copynumber: 2.4 Consensus size: 80
77487438 TATAACCACA
* * * *
77487448 AGCACAAATGCCTTCGGGTCTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGATCTTAGT
1 AGCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGATCTTAGC
77487513 CCAGATAAAATCACT
66 CCAGATAAAATCACT
* * *
77487528 AGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACAAATGCCTTCGGGTCTTAGC
1 AGCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGATCTTAGC
*
77487593 CCGGATAAAATCACT
66 CCAGATAAAATCACT
* *
77487608 AGCACAATTGCATTCGGGACTTAGCCCGGATAT
1 AGCACAATTGCCTTCGGGTCTTAGCCCGGATAT
77487641 CATTCAAATG
Statistics
Matches: 101, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
80 101 1.00
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (80 bp):
AGCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGATCTTAGC
CCAGATAAAATCACT
Found at i:77492331 original size:47 final size:47
Alignment explanation
Indices: 77492215--77492992 Score: 1103
Period size: 47 Copynumber: 16.6 Consensus size: 47
77492205 CCCTTCGGGA
* * * *
77492215 CTTATCACATTTATACACTTCCACATCCATCACATTGGCCATT-CGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
77492261 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* * *
77492308 CTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTCGG-
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTAGGC
* * *
77492354 CTTATCAC--ACACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTAGGC
* * *
77492399 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTAGGC
* * *
77492446 CTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTAGGC
* *
77492493 CTTATCAC--ATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTAGGC
77492538 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* * *
77492587 CTTATCACATATATACACTTTCACATTCATCAAATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
77492634 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
77492681 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* *
77492730 CTTATCACATATATACACTTTCACATTCATCACATCGG-CTTTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
77492776 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* *
77492823 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
77492872 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
77492919 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
77492966 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
77492993 TATTCAAATA
Statistics
Matches: 687, Mismatches: 30, Indels: 29
0.92 0.04 0.04
Matches are distributed among these distances:
44 33 0.05
45 51 0.07
46 93 0.14
47 375 0.55
49 134 0.20
50 1 0.00
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
Found at i:77492502 original size:22 final size:22
Alignment explanation
Indices: 77492474--77492547 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
77492464 GTTCACATTC
77492474 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
77492496 ATCACA-T-ACACATGTTC-ACATT
1 ATCACATTGGC-CA--TTCGGCCTT
77492518 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
77492541 ATCACAT
1 ATCACAT
77492548 ATATATACAC
Statistics
Matches: 39, Mismatches: 6, Indels: 14
0.66 0.10 0.24
Matches are distributed among these distances:
20 1 0.03
21 3 0.08
22 19 0.49
23 12 0.31
24 3 0.08
25 1 0.03
ACGTcount: A:0.26, C:0.31, G:0.12, T:0.31
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:77492878 original size:285 final size:283
Alignment explanation
Indices: 77492215--77492992 Score: 1132
Period size: 285 Copynumber: 2.8 Consensus size: 283
77492205 CCCTTCGGGA
* * * *
77492215 CTTATCACATTTATACACTTCCACATCCATCACATTGGCCATTCGCCTTATCAC--ATATATACA
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTGGCCTTATCACATATATATACA
* * *
77492278 CTTTCACATTCATCACATTGGCCATTCGGCCTTATCTCATATATGCA-TGTTCACATTCATCACA
66 CTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACACT-TTCACATTCATCACA
* * * * *
77492342 TTGGCCATTCGG-CTTATCAC--ACACACA-TGTTCACATTCATCACATTGGCCATTCGGCCTTA
130 TCGGCCATTAGGCCTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTAGGCCTTA
* * * * * *
77492403 TCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGCCTTATCTCATATATGCATGTT
194 TCACATATATACACT-TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACATGTT
* *
77492467 CACATTCATCACATTGGCCATTCGGC
258 CACATTCATCACATCGGCCATTAGGC
*
77492493 CTTATCAC--ATACACA-TGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATATA
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATT-GGCCTTATCACATATATATA
*
77492555 CACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCAA
64 CACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCAC
* *
77492620 ATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
129 ATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTA
77492685 TCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACT-
194 TCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA-TG
*
77492749 TTCACATTCATCACATCGG-CTTTAGGC
256 TTCACATTCATCACATCGGCCATTAGGC
*
77492776 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATT-GGCCTTATCACATATATATAC
* *
77492841 ACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
65 ACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
77492906 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTAT
130 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTAT
77492971 CACATATATACACTTTCACATT
195 CACATATATACACTTTCACATT
77492993 TATTCAAATA
Statistics
Matches: 451, Mismatches: 33, Indels: 27
0.88 0.06 0.05
Matches are distributed among these distances:
275 1 0.00
276 27 0.06
277 10 0.02
278 8 0.02
279 76 0.17
280 9 0.02
282 39 0.09
283 34 0.08
284 66 0.15
285 180 0.40
286 1 0.00
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (283 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTGGCCTTATCACATATATATACA
CTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACAT
CGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATC
ACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACATGTTCAC
ATTCATCACATCGGCCATTAGGC
Found at i:77494027 original size:25 final size:25
Alignment explanation
Indices: 77493978--77494028 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 25
77493968 CTATTCGATC
* *
77493978 ACTTTTTTTTCCTTTCCTTTATCCA
1 ACTTTTTTTTCCTATCCTCTATCCA
77494003 ACTTTTTTTTCCTAATCCTCT-TCCA
1 ACTTTTTTTTCCT-ATCCTCTATCCA
77494028 A
1 A
77494029 ACCAAACATG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
25 18 0.78
26 5 0.22
ACGTcount: A:0.16, C:0.29, G:0.00, T:0.55
Consensus pattern (25 bp):
ACTTTTTTTTCCTATCCTCTATCCA
Found at i:77502782 original size:42 final size:42
Alignment explanation
Indices: 77502723--77502834 Score: 134
Period size: 42 Copynumber: 2.7 Consensus size: 42
77502713 TGTCGGTGCT
* *** *
77502723 GATGCCATGTTCCAGACATGGTCTTACACGGGAGCTCGTATC
1 GATGCCATGTCCCAGACATGGTCTTACACAAAAGCTCATATC
*
77502765 GATGCCATGTCCCAGACATGGTCTTACACAAAATCTCATATC
1 GATGCCATGTCCCAGACATGGTCTTACACAAAAGCTCATATC
* * * *
77502807 AACGCCATATCCCAGATATGGTCTTACA
1 GATGCCATGTCCCAGACATGGTCTTACA
77502835 TTGGCACACA
Statistics
Matches: 60, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
42 60 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.26
Consensus pattern (42 bp):
GATGCCATGTCCCAGACATGGTCTTACACAAAAGCTCATATC
Found at i:77508864 original size:39 final size:39
Alignment explanation
Indices: 77508766--77509101 Score: 482
Period size: 39 Copynumber: 8.6 Consensus size: 39
77508756 ACAAAGCATG
* *
77508766 CGGGACTTTAAGCCCGGATATAATACCAGCAC-AAAGCC-T
1 CGGGAC-TT-AGCCCGGATATAACACCAGCACGAATGCCTT
*
77508805 -GGAGACTTTAGCCTGGATATAACACCAGCACGAATGCCTT
1 CGG-GAC-TTAGCCCGGATATAACACCAGCACGAATGCCTT
*
77508845 CGGGGCTTAGCCCGGATATAACACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
77508884 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
*
77508923 CGGGACTTAGCCCAGATATAACACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
* *
77508962 CGGGACTTTGCCCGGATATAACACCAGCATGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
** *
77509001 AAGGACTTAGCCCGGATATAACACCAGCATGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
* * *
77509040 CAGGACTTAGCCCGGATAT-ACAACCAACATGAATGCCTT
1 CGGGACTTAGCCCGGATATAAC-ACCAGCACGAATGCCTT
77509079 CGGGACTTAGCCCGGATATAACA
1 CGGGACTTAGCCCGGATATAACA
77509102 GCATTATAAA
Statistics
Matches: 275, Mismatches: 16, Indels: 12
0.91 0.05 0.04
Matches are distributed among these distances:
38 24 0.09
39 244 0.89
40 5 0.02
41 2 0.01
ACGTcount: A:0.30, C:0.28, G:0.22, T:0.20
Consensus pattern (39 bp):
CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
Found at i:77509210 original size:28 final size:28
Alignment explanation
Indices: 77509177--77509258 Score: 92
Period size: 28 Copynumber: 2.9 Consensus size: 28
77509167 ATTTAATCAT
**
77509177 TCAATATTTTTCACACTAAGTGTCATTC
1 TCAATATTTCGCACACTAAGTGTCATTC
* * *
77509205 TCAATATCTCGCACATTAAGTGTCATTT
1 TCAATATTTCGCACACTAAGTGTCATTC
* * *
77509233 TCAATATTTCGTACACTGAGTATCAT
1 TCAATATTTCGCACACTAAGTGTCAT
77509259 ATTTGATTGC
Statistics
Matches: 44, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
28 44 1.00
ACGTcount: A:0.29, C:0.21, G:0.10, T:0.40
Consensus pattern (28 bp):
TCAATATTTCGCACACTAAGTGTCATTC
Found at i:77515459 original size:39 final size:39
Alignment explanation
Indices: 77515392--77515691 Score: 442
Period size: 39 Copynumber: 7.7 Consensus size: 39
77515382 ACAAAGCATG
* * *
77515392 CGGGACTTTAAGCCCGGATATAATACCAGCAC-AAAGCCTG
1 CGGGAC-TT-AGCCCGGATATAACACCAGCACGAATGCCTT
* *
77515432 CGAGACTTTAGCCCGGATATAACACCAGCACAAATGCCTT
1 CGGGAC-TTAGCCCGGATATAACACCAGCACGAATGCCTT
*
77515472 CGGGGCTTAGCCCGGATATAACACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
77515511 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
*
77515550 CGGGACTTAGCCCAGATATAACACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
* *
77515589 CGGGACTTAGCCCGGATATAACGCCAGCATGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
* * * *
77515628 CAGGACTTAGCTCGGATA-AACACCAACACGATTGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
77515666 CGGGACTTAGCCCGGATATAACACCA
1 CGGGACTTAGCCCGGATATAACACCA
77515692 TTATAAAGTC
Statistics
Matches: 238, Mismatches: 20, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
38 32 0.13
39 188 0.79
40 18 0.08
ACGTcount: A:0.30, C:0.30, G:0.22, T:0.19
Consensus pattern (39 bp):
CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
Found at i:77515797 original size:28 final size:28
Alignment explanation
Indices: 77515764--77515845 Score: 92
Period size: 28 Copynumber: 2.9 Consensus size: 28
77515754 ATTTAATCAT
* *
77515764 TCAATATTTTGCACACTAAGTGTCATTC
1 TCAATATTTCGCACACTAAGTGCCATTC
* *
77515792 TCAATATCTCGCACATTAAGTGCCATTC
1 TCAATATTTCGCACACTAAGTGCCATTC
* * * *
77515820 TCATTATTTCGTACACTGAGTACCAT
1 TCAATATTTCGCACACTAAGTGCCAT
77515846 ATTTGATTGC
Statistics
Matches: 44, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
28 44 1.00
ACGTcount: A:0.28, C:0.24, G:0.11, T:0.37
Consensus pattern (28 bp):
TCAATATTTCGCACACTAAGTGCCATTC
Found at i:77520425 original size:38 final size:38
Alignment explanation
Indices: 77520343--77520508 Score: 190
Period size: 38 Copynumber: 4.3 Consensus size: 38
77520333 AAACCCAAAC
* * * * *
77520343 ATAACACCAGCACGAAGCCTACGGGACTTTAAACTCAGAT
1 ATAATACCAGCACGAAGCCTGCGAGA-TTT-AACCCGGAT
* *
77520383 ATAATACCAGCACTAGGCCTGCGAGATTTAACCCGGAT
1 ATAATACCAGCACGAAGCCTGCGAGATTTAACCCGGAT
*
77520421 ATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGAT
1 ATAATACCAGCACGAAGCCTGCGAGATTTAACCCGGAT
* * *
77520459 ATATTACCAGCACGAAGCCTG-TAGGATTTAACCCAGAT
1 ATAATACCAGCACGAAGCCTGCGA-GATTTAACCCGGAT
*
77520497 ATAATTCCAGCA
1 ATAATACCAGCA
77520509 TATAGCCTGC
Statistics
Matches: 109, Mismatches: 16, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
38 85 0.78
39 3 0.03
40 21 0.19
ACGTcount: A:0.34, C:0.26, G:0.19, T:0.20
Consensus pattern (38 bp):
ATAATACCAGCACGAAGCCTGCGAGATTTAACCCGGAT
Found at i:77520487 original size:76 final size:76
Alignment explanation
Indices: 77520334--77520537 Score: 214
Period size: 76 Copynumber: 2.6 Consensus size: 76
77520324 CGAGGTATAA
* * * * * * * *
77520334 AACCCAAACATAACACCAGCACGAAGCCTACGGGACTTTAAACTCAGATATAATACCAGCACTAG
1 AACCCAGATATAATACCAGCACGAAGCCTGCGGGA-TTT-AACCCGGATATAATACCAGCACGAA
*
77520399 GCCTGCGAGATTT
64 GCCTGAGAGATTT
* *
77520412 AACCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATTACCAGCACGAAGC
1 AACCCAGATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAATACCAGCACGAAGC
77520477 CTGTAG-GATTT
66 CTG-AGAGATTT
* * *
77520488 AACCCAGATATAATTCCAGCA-TATAGCCTGCGGGTCTTTAAGCCCGGATA
1 AACCCAGATATAATACCAGCACGA-AGCCTGCGGG-ATTTAA-CCCGGATA
77520538 CACATCAAAT
Statistics
Matches: 107, Mismatches: 15, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
75 1 0.01
76 59 0.55
77 9 0.08
78 38 0.36
ACGTcount: A:0.33, C:0.26, G:0.20, T:0.21
Consensus pattern (76 bp):
AACCCAGATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAATACCAGCACGAAGC
CTGAGAGATTT
Found at i:77524862 original size:42 final size:42
Alignment explanation
Indices: 77524799--77524961 Score: 146
Period size: 42 Copynumber: 3.7 Consensus size: 42
77524789 CATGTCGCTG
* * **
77524799 TCGATGCCATGTCCCAAACATGGTCTTACACGGGACCTCATA
1 TCGATGCCATATCCCAGACATGGTCTTACACGAAACCTCATA
* *
77524841 TCGATGCCCTATCCCAGACATGGTCTTACACGAAATCTCATA
1 TCGATGCCATATCCCAGACATGGTCTTACACGAAACCTCATA
* ** * * **
77524883 TCAACACCATATCCCAGATATGGTCTTACATGAAATCACATACCGA
1 TCGATGCCATATCCCAGACATGGTCTTACACGAAA-C-C-T-CATA
*
77524929 TGCTGATGCCATATCCCAGATATGGTCTTACAC
1 T-C-GATGCCATATCCCAGACATGGTCTTACAC
77524962 TAGCACACAT
Statistics
Matches: 96, Mismatches: 19, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
42 65 0.68
44 1 0.01
45 1 0.01
46 3 0.03
47 1 0.01
48 25 0.26
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.26
Consensus pattern (42 bp):
TCGATGCCATATCCCAGACATGGTCTTACACGAAACCTCATA
Found at i:77524874 original size:90 final size:90
Alignment explanation
Indices: 77524714--77524881 Score: 214
Period size: 90 Copynumber: 1.9 Consensus size: 90
77524704 GAATGCCAAA
** * * * * * *
77524714 GCCATGTCCCCGACATGGTCTTACATGGGTCTACTTATCGATGCCATATCCTAGATATGGTGTTC
1 GCCATGTCCCAAACATGGTCTTACACGGGCCTACATATCGATGCCATATCCCAGACATGGTCTTC
*
77524779 TACGAAGTCTCATGTCGCTGTCGAT
66 TACGAAATCTCATGTCGCTGTCGAT
*
77524804 GCCATGTCCCAAACATGGTCTTACACGGGACCT-CATATCGATGCCCTATCCCAGACATGGTCTT
1 GCCATGTCCCAAACATGGTCTTACACGGG-CCTACATATCGATGCCATATCCCAGACATGGTCTT
77524868 AC-ACGAAATCTCAT
65 -CTACGAAATCTCAT
77524882 ATCAACACCA
Statistics
Matches: 66, Mismatches: 10, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
90 63 0.95
91 3 0.05
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.29
Consensus pattern (90 bp):
GCCATGTCCCAAACATGGTCTTACACGGGCCTACATATCGATGCCATATCCCAGACATGGTCTTC
TACGAAATCTCATGTCGCTGTCGAT
Found at i:77524971 original size:48 final size:48
Alignment explanation
Indices: 77524844--77525010 Score: 143
Period size: 48 Copynumber: 3.6 Consensus size: 48
77524834 CCTCATATCG
* * * * *
77524844 ATGCCCTATCCCAGACATGGTCTTACACGAAATCTCATATC-A-AC--
1 ATGCCATATCCCAGATATGGTCTTACATGAAATCACATACCAACACTA
* ** *
77524888 A--CCATATCCCAGATATGGTCTTACATGAAATCACATACCGATGCTG
1 ATGCCATATCCCAGATATGGTCTTACATGAAATCACATACCAACACTA
* *
77524934 ATGCCATATCCCAGATATGGTCTTACACT-AGCA-CACATATCAACACTA
1 ATGCCATATCCCAGATATGGTCTTACA-TGA-AATCACATACCAACACTA
* *
77524982 ATGCCATGTCCCAGACATGGTCTTACATG
1 ATGCCATATCCCAGATATGGTCTTACATG
77525011 GGCTCTCATC
Statistics
Matches: 100, Mismatches: 14, Indels: 14
0.78 0.11 0.11
Matches are distributed among these distances:
42 33 0.33
43 1 0.01
44 2 0.02
46 1 0.01
47 1 0.01
48 60 0.60
49 2 0.02
ACGTcount: A:0.32, C:0.29, G:0.14, T:0.26
Consensus pattern (48 bp):
ATGCCATATCCCAGATATGGTCTTACATGAAATCACATACCAACACTA
Found at i:77529745 original size:40 final size:40
Alignment explanation
Indices: 77529690--77529933 Score: 375
Period size: 40 Copynumber: 6.1 Consensus size: 40
77529680 TGGATGATAA
* * *
77529690 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
*
77529730 CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
77529770 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
77529810 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
77529850 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * * *
77529890 CCGGGCTATGTCCCGAAGGTATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
77529930 CCGG
1 CCGG
77529934 TTCAATCCCG
Statistics
Matches: 191, Mismatches: 11, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
39 3 0.02
40 188 0.98
ACGTcount: A:0.22, C:0.23, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:77537877 original size:40 final size:40
Alignment explanation
Indices: 77537822--77537905 Score: 134
Period size: 40 Copynumber: 2.1 Consensus size: 40
77537812 TGGATAATAA
* *
77537822 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGAGCGAG-TAGCTATAT
77537862 CCGGGCTAAGTCCCGAAGGCATTCGAGCGAGTAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGAGCGAGTAGCTATAT
77537902 CCGG
1 CCGG
77537906 TTCAATCCCG
Statistics
Matches: 41, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
39 2 0.05
40 39 0.95
ACGTcount: A:0.23, C:0.25, G:0.30, T:0.23
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTCGAGCGAGTAGCTATAT
Found at i:77547641 original size:39 final size:39
Alignment explanation
Indices: 77547615--77547747 Score: 160
Period size: 39 Copynumber: 3.4 Consensus size: 39
77547605 GGGACTGTAG
77547615 GCCCGGATAT-ATTCCAGCACGTAGCCTGTGGACCTCAA
1 GCCCGGATATGATTCCAGCACGTAGCCTGTGGACCTCAA
* * ** *
77547653 GTCCGGATATGTTTCCAGCACGTAGCCTGCAGATCTCAA
1 GCCCGGATATGATTCCAGCACGTAGCCTGTGGACCTCAA
* * * *
77547692 GTCCGGATATGTTTCCAGTACGTAGCCTGCGGACCTCAA
1 GCCCGGATATGATTCCAGCACGTAGCCTGTGGACCTCAA
* *
77547731 GTCCGGATATGTTTCCA
1 GCCCGGATATGATTCCA
77547748 AATATCATGC
Statistics
Matches: 86, Mismatches: 8, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
38 9 0.10
39 77 0.90
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.26
Consensus pattern (39 bp):
GCCCGGATATGATTCCAGCACGTAGCCTGTGGACCTCAA
Found at i:77550264 original size:47 final size:48
Alignment explanation
Indices: 77550211--77550342 Score: 185
Period size: 47 Copynumber: 2.8 Consensus size: 48
77550201 CACAATTGAT
* *
77550211 AAGTACCTATACCATGACCCGTAGCCAAATCAAGGTAACTTATCCCTG
1 AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCATCCCTG
* * **
77550259 -AGTACCTATACCATGGCCCATAGCCAAATCAAGGTAACTCCTTTCTG
1 AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCATCCCTG
* *
77550306 AAATACCTATACCATGGTCCGTAGCCAAATCAAGGTA
1 AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTA
77550343 TCATTCGCAC
Statistics
Matches: 74, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
47 41 0.55
48 33 0.45
ACGTcount: A:0.33, C:0.28, G:0.15, T:0.23
Consensus pattern (48 bp):
AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCATCCCTG
Found at i:77555258 original size:25 final size:24
Alignment explanation
Indices: 77555218--77555289 Score: 76
Period size: 24 Copynumber: 3.0 Consensus size: 24
77555208 GGCTATATAA
*
77555218 CGGGAAGCTCAT-AAGAGCTATAAT
1 CGGGAAGCTCATAAAGAGCCAT-AT
* * *
77555242 TGGGAAGTTCATAAAGAACCATAT
1 CGGGAAGCTCATAAAGAGCCATAT
*
77555266 CGGGAAGCTCACAAAGAGCC-TAT
1 CGGGAAGCTCATAAAGAGCCATAT
77555289 C
1 C
77555290 AAAAAGCTCA
Statistics
Matches: 39, Mismatches: 8, Indels: 3
0.78 0.16 0.06
Matches are distributed among these distances:
23 4 0.10
24 28 0.72
25 7 0.18
ACGTcount: A:0.38, C:0.19, G:0.24, T:0.19
Consensus pattern (24 bp):
CGGGAAGCTCATAAAGAGCCATAT
Found at i:77556741 original size:47 final size:47
Alignment explanation
Indices: 77556676--77556852 Score: 237
Period size: 47 Copynumber: 3.8 Consensus size: 47
77556666 GTGTGAATAA
* **
77556676 TACCTTGATTTGGCTACGGGCCATGGTATAGGTATTCAGAGAGGAGT
1 TACCTTGATTTGGCTACGGGCCATGGTATAGGTACTCAGAGAAAAGT
* * * * *
77556723 TACCTTGATTTGGGTACGGGCAATTGTATAGGTACCCCGAGAAAAGT
1 TACCTTGATTTGGCTACGGGCCATGGTATAGGTACTCAGAGAAAAGT
* * * *
77556770 TACCTTGATTTGGCTACGGGGCATGGTATAGGTACTCTGGGACAAGT
1 TACCTTGATTTGGCTACGGGCCATGGTATAGGTACTCAGAGAAAAGT
*
77556817 TACCTTGATTTGGTTACGGGCCATGGTATAGGTACT
1 TACCTTGATTTGGCTACGGGCCATGGTATAGGTACT
77556853 TATCAATTGT
Statistics
Matches: 112, Mismatches: 18, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
47 112 1.00
ACGTcount: A:0.23, C:0.16, G:0.30, T:0.31
Consensus pattern (47 bp):
TACCTTGATTTGGCTACGGGCCATGGTATAGGTACTCAGAGAAAAGT
Found at i:77556837 original size:94 final size:94
Alignment explanation
Indices: 77556676--77556851 Score: 271
Period size: 94 Copynumber: 1.9 Consensus size: 94
77556666 GTGTGAATAA
* **
77556676 TACCTTGATTTGGCTACGGGCCATGGTATAGGTATTCAGAGAGGAGTTACCTTGATTTGGGTACG
1 TACCTTGATTTGGCTACGGGCCATGGTATAGGTACTCAGAGACAAGTTACCTTGATTTGGGTACG
*
77556741 GGCAATTGTATAGGTACCCCGAGAAAAGT
66 GGCAATGGTATAGGTACCCCGAGAAAAGT
* * * *
77556770 TACCTTGATTTGGCTACGGGGCATGGTATAGGTACTCTGGGACAAGTTACCTTGATTTGGTTACG
1 TACCTTGATTTGGCTACGGGCCATGGTATAGGTACTCAGAGACAAGTTACCTTGATTTGGGTACG
*
77556835 GGCCATGGTATAGGTAC
66 GGCAATGGTATAGGTAC
77556852 TTATCAATTG
Statistics
Matches: 73, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
94 73 1.00
ACGTcount: A:0.23, C:0.16, G:0.30, T:0.30
Consensus pattern (94 bp):
TACCTTGATTTGGCTACGGGCCATGGTATAGGTACTCAGAGACAAGTTACCTTGATTTGGGTACG
GGCAATGGTATAGGTACCCCGAGAAAAGT
Found at i:77563802 original size:46 final size:46
Alignment explanation
Indices: 77563750--77563968 Score: 239
Period size: 46 Copynumber: 4.7 Consensus size: 46
77563740 TTGGGCATCT
* *
77563750 GAACTCGTTGAGTTGAGCCCGAGTTCACTTATGGATGCCAATGCCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCC
* * * * *
77563796 GAACTCGTTGAGTAGAGTCCGAGTTC-GTGA--GATG-TAACTAGGCATCT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--GC--CC
*
77563843 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCTC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCC
* *
77563889 GAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGCCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCC
* * * *
77563935 GAGCTCGTTGAGTTGAGTTCAAGTTCGCTTATGG
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
77563969 GTGGGTTACA
Statistics
Matches: 144, Mismatches: 20, Indels: 18
0.79 0.11 0.10
Matches are distributed among these distances:
42 2 0.01
43 5 0.03
45 4 0.03
46 96 0.67
47 26 0.18
48 4 0.03
50 5 0.03
51 2 0.01
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (46 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCC
Found at i:77563907 original size:93 final size:93
Alignment explanation
Indices: 77563743--77563914 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
77563733 AGGATATTTG
77563743 GGCATCTGAACTCGTTGAGTTGAGCCCGAGTTCACTTATGGATGCCAATGCCCGAACTCGTTGAG
1 GGCATCTGAACTCGTTGAGTTGAGCCCGAGTTCACTTATGGATGCCAATGCCCGAACTCGTTGAG
77563808 TAGAGTCCGAGTTCGTGAGATGTAACTA
66 TAGAGTCCGAGTTCGTGAGATGTAACTA
* * *
77563836 GGCATCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCTCGAACTCGTTGAG
1 GGCATCTGAACTCGTTGAGTTGAGCCCGAGTTCACTTATGGATGCCAATGCCCGAACTCGTTGAG
* *
77563901 TTGAGTCTGAGTTC
66 TAGAGTCCGAGTTC
77563915 ACTTATGGAT
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.29
Consensus pattern (93 bp):
GGCATCTGAACTCGTTGAGTTGAGCCCGAGTTCACTTATGGATGCCAATGCCCGAACTCGTTGAG
TAGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:77585044 original size:26 final size:26
Alignment explanation
Indices: 77585007--77585067 Score: 70
Period size: 26 Copynumber: 2.3 Consensus size: 26
77584997 AGATCAAGTA
*
77585007 AAAATAGT-ATTAAAGAGAAATAAAAT
1 AAAA-AGTAATTAAAAAGAAATAAAAT
* *
77585033 AAAAAGTAATTAAAAATAAATAAAGT
1 AAAAAGTAATTAAAAAGAAATAAAAT
*
77585059 TAAAAGTAA
1 AAAAAGTAA
77585068 ACTAATAAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
25 3 0.10
26 27 0.90
ACGTcount: A:0.67, C:0.00, G:0.10, T:0.23
Consensus pattern (26 bp):
AAAAAGTAATTAAAAAGAAATAAAAT
Found at i:77586411 original size:29 final size:30
Alignment explanation
Indices: 77586379--77586435 Score: 80
Period size: 29 Copynumber: 1.9 Consensus size: 30
77586369 ACCATGAATA
* *
77586379 TAATTAAACTAACAA-ATTCAACCAAAAAT
1 TAATGAAACTAACAAGACTCAACCAAAAAT
*
77586408 TAATGACACTAACAAGACTCAACCAAAA
1 TAATGAAACTAACAAGACTCAACCAAAA
77586436 GCAGTCGAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 13 0.54
30 11 0.46
ACGTcount: A:0.56, C:0.21, G:0.04, T:0.19
Consensus pattern (30 bp):
TAATGAAACTAACAAGACTCAACCAAAAAT
Found at i:77587253 original size:29 final size:29
Alignment explanation
Indices: 77587206--77587284 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
77587196 TTTAATAATC
*
77587206 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
77587236 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
77587265 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
77587285 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:77587324 original size:43 final size:43
Alignment explanation
Indices: 77587266--77587368 Score: 188
Period size: 43 Copynumber: 2.4 Consensus size: 43
77587256 TGCATTTCAA
77587266 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
* *
77587309 TCCCGCACACTTAGTGCCAATCTCACAACTGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
77587352 GCCCGCACACTTAGTGC
1 GCCCGCACACTTAGTGC
77587369 TGAAAACCAA
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 57 1.00
ACGTcount: A:0.26, C:0.35, G:0.15, T:0.24
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
Found at i:77589271 original size:37 final size:37
Alignment explanation
Indices: 77589221--77589299 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
77589211 TTATTACGAA
* * *
77589221 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
77589258 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
77589295 GTCTT
1 GTCTT
77589300 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:77589505 original size:47 final size:47
Alignment explanation
Indices: 77589418--77589987 Score: 897
Period size: 47 Copynumber: 12.1 Consensus size: 47
77589408 CCTTTCGGGA
* * * * * * * * *
77589418 CTTATAACATTTATGCACTTTCACATCCATTACGTTGGCCAGTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
77589465 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
77589512 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
77589559 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
77589606 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
77589653 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
77589700 CTTATCACATATACATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATAT--ATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
77589749 CTTATTACATACATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
77589796 CCTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
77589843 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
77589890 CCTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
77589937 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
77589984 CTTA
1 CTTA
77589988 CTATCATTTC
Statistics
Matches: 488, Mismatches: 33, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
47 443 0.91
49 45 0.09
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:77600718 original size:13 final size:13
Alignment explanation
Indices: 77600700--77600728 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
77600690 TTTAGTTTAA
77600700 TTAGTTAATTAGT
1 TTAGTTAATTAGT
77600713 TTAGTTAATTAGT
1 TTAGTTAATTAGT
77600726 TTA
1 TTA
77600729 ATAAACAACC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.31, C:0.00, G:0.14, T:0.55
Consensus pattern (13 bp):
TTAGTTAATTAGT
Found at i:77605894 original size:47 final size:47
Alignment explanation
Indices: 77605836--77605972 Score: 247
Period size: 47 Copynumber: 2.9 Consensus size: 47
77605826 TTAGGATTTT
* *
77605836 AATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCC
*
77605883 AATGTGGTGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCC
77605930 AATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAAT
1 AATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAAT
77605973 ATGTGTGATA
Statistics
Matches: 86, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 86 1.00
ACGTcount: A:0.32, C:0.12, G:0.30, T:0.26
Consensus pattern (47 bp):
AATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCC
Found at i:77605976 original size:19 final size:19
Alignment explanation
Indices: 77605952--77605991 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
77605942 GTGAACATGC
77605952 ATATGTGTGATAAGGCCGA
1 ATATGTGTGATAAGGCCGA
77605971 ATATGTGTGATAAGGCCGA
1 ATATGTGTGATAAGGCCGA
77605990 AT
1 AT
77605992 GGCCAACGTG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.33, C:0.10, G:0.30, T:0.28
Consensus pattern (19 bp):
ATATGTGTGATAAGGCCGA
Found at i:77605980 original size:66 final size:66
Alignment explanation
Indices: 77605905--77606038 Score: 250
Period size: 66 Copynumber: 2.0 Consensus size: 66
77605895 GTGAACATGC
*
77605905 ATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCG
1 ATATGTGTGATAAGGCCGAATGGCCAACGTGATGAATGTGAACATGCATATGTGTGATAAGGCCG
77605970 A
66 A
*
77605971 ATATGTGTGATAAGGCCGAATGGCCAACGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCG
1 ATATGTGTGATAAGGCCGAATGGCCAACGTGATGAATGTGAACATGCATATGTGTGATAAGGCCG
77606036 A
66 A
77606037 AT
1 AT
77606039 GGCCAATGTG
Statistics
Matches: 66, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
66 66 1.00
ACGTcount: A:0.31, C:0.13, G:0.31, T:0.25
Consensus pattern (66 bp):
ATATGTGTGATAAGGCCGAATGGCCAACGTGATGAATGTGAACATGCATATGTGTGATAAGGCCG
A
Found at i:77605983 original size:113 final size:113
Alignment explanation
Indices: 77605858--77606079 Score: 399
Period size: 113 Copynumber: 2.0 Consensus size: 113
77605848 GTGAGCATGC
* *
77605858 ATATATGTGATAAGGCCGAATGGCCAATGTGGTGAATGTGAACATGCATATGTGTGATAAGGCCG
1 ATATATGTGATAAGGCCGAATGGCCAACGTGATGAATGTGAACATGCATATGTGTGATAAGGCCG
*
77605923 AATGGCCAATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGA
66 AATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGA
* *
77605971 ATATGTGTGATAAGGCCGAATGGCCAACGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCG
1 ATATATGTGATAAGGCCGAATGGCCAACGTGATGAATGTGAACATGCATATGTGTGATAAGGCCG
77606036 AATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAAGG
66 AATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAAGG
77606080 TAGAATGGCC
Statistics
Matches: 104, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
113 104 1.00
ACGTcount: A:0.32, C:0.12, G:0.30, T:0.26
Consensus pattern (113 bp):
ATATATGTGATAAGGCCGAATGGCCAACGTGATGAATGTGAACATGCATATGTGTGATAAGGCCG
AATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGA
Found at i:77606027 original size:47 final size:47
Alignment explanation
Indices: 77605971--77606100 Score: 215
Period size: 47 Copynumber: 2.8 Consensus size: 47
77605961 ATAAGGCCGA
* *
77605971 ATATGTGTGATAAGGCCGAATGGCCAACGTGATGAATGTGAGCATGC
1 ATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
77606018 ATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
1 ATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
* **
77606065 ATATATGTGATAAGGTAGAATGGCCAATGTGATGAA
1 ATATGTGTGATAAGGCCGAATGGCCAATGTGATGAA
77606101 CGTGTAAGTG
Statistics
Matches: 78, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 78 1.00
ACGTcount: A:0.33, C:0.12, G:0.30, T:0.25
Consensus pattern (47 bp):
ATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
Found at i:77606133 original size:47 final size:47
Alignment explanation
Indices: 77605971--77606140 Score: 173
Period size: 47 Copynumber: 3.6 Consensus size: 47
77605961 ATAAGGCCGA
* * * * *
77605971 ATATGTGTGATAAGGCCGAATGGCCAACGTGATGAATGTGAGCATGC
1 ATATATGTGAGAAGGCCGAATGGCCAATGTGATGAACGTGAACATGC
* * *
77606018 ATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
1 ATATATGTGAGAAGGCCGAATGGCCAATGTGATGAACGTGAACATGC
* ** * *
77606065 ATATATGTGATAAGGTAGAATGGCCAATGTGATGAACGTGTAA-GTGT
1 ATATATGTGAGAAGGCCGAATGGCCAATGTGATGAACGTG-AACATGC
* *
77606112 ATATATGTGGCGAA-GCCGAATGGCTAATG
1 ATATATGT-GAGAAGGCCGAATGGCCAATG
77606141 CGAAATGTGT
Statistics
Matches: 108, Mismatches: 13, Indels: 4
0.86 0.10 0.03
Matches are distributed among these distances:
47 103 0.95
48 5 0.05
ACGTcount: A:0.32, C:0.12, G:0.31, T:0.26
Consensus pattern (47 bp):
ATATATGTGAGAAGGCCGAATGGCCAATGTGATGAACGTGAACATGC
Found at i:77606174 original size:46 final size:46
Alignment explanation
Indices: 77606124--77606249 Score: 144
Period size: 46 Copynumber: 2.7 Consensus size: 46
77606114 ATATGTGGCG
*
77606124 AAGCCGAATGGCTAATGCGAAATGTGTATGAGATCGATATGAGGTA
1 AAGCCGAATGGCTAATGCGAAATGTGTATGAGATCGATACGAGGTA
* * * * * *
77606170 AAGCCGAGTGGCTAATGCAAAACGTATATGAGATGGATACGTGGTA
1 AAGCCGAATGGCTAATGCGAAATGTGTATGAGATCGATACGAGGTA
* * * * *
77606216 AAACCAAATGGCTAATGTGAGATATGTATGAGAT
1 AAGCCGAATGGCTAATGCGAAATGTGTATGAGAT
77606250 GTGTATATAT
Statistics
Matches: 64, Mismatches: 16, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
46 64 1.00
ACGTcount: A:0.37, C:0.11, G:0.29, T:0.24
Consensus pattern (46 bp):
AAGCCGAATGGCTAATGCGAAATGTGTATGAGATCGATACGAGGTA
Found at i:77607799 original size:40 final size:40
Alignment explanation
Indices: 77607744--77607940 Score: 358
Period size: 40 Copynumber: 4.9 Consensus size: 40
77607734 ATTGAGAGTT
77607744 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
**
77607784 ATATATCTAGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
77607824 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
77607864 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
* *
77607904 ACATATCTGGGCTAAGTCCCGAAGAGCATTCGTGCTA
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTA
77607941 CTGTTCTGAT
Statistics
Matches: 151, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 151 1.00
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
Found at i:77620613 original size:13 final size:13
Alignment explanation
Indices: 77620595--77620622 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
77620585 TATGTGAAAT
77620595 TTAACGATATTGA
1 TTAACGATATTGA
77620608 TTAACGATATTGA
1 TTAACGATATTGA
77620621 TT
1 TT
77620623 GATACCAACA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.36, C:0.07, G:0.14, T:0.43
Consensus pattern (13 bp):
TTAACGATATTGA
Found at i:77621969 original size:13 final size:13
Alignment explanation
Indices: 77621947--77621979 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
77621937 AAGGGTTTGT
77621947 TTAT-TAAACTAA
1 TTATCTAAACTAA
77621959 TTATCTAAACTAA
1 TTATCTAAACTAA
*
77621972 TTAACTAA
1 TTATCTAA
77621980 TTTAATTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:77624937 original size:4 final size:5
Alignment explanation
Indices: 77624885--77624966 Score: 80
Period size: 5 Copynumber: 15.8 Consensus size: 5
77624875 TATGTCTTTC
*
77624885 AAAAT AAAAT --AAT AAAATT GAAAT GAAAAT AAAAT AAAAAT AAAA-
1 AAAAT AAAAT AAAAT AAAA-T AAAAT -AAAAT AAAAT -AAAAT AAAAT
77624930 ATAAAT AAAAT AAAAT AAAAT AAAAAT AAGAAT AAAA
1 A-AAAT AAAAT AAAAT AAAAT -AAAAT AA-AAT AAAA
77624967 AAAGATAGAA
Statistics
Matches: 66, Mismatches: 2, Indels: 18
0.77 0.02 0.21
Matches are distributed among these distances:
3 3 0.05
4 1 0.02
5 38 0.58
6 24 0.36
ACGTcount: A:0.77, C:0.00, G:0.04, T:0.20
Consensus pattern (5 bp):
AAAAT
Found at i:77624945 original size:31 final size:31
Alignment explanation
Indices: 77624905--77624969 Score: 105
Period size: 31 Copynumber: 2.1 Consensus size: 31
77624895 AATAAAATTG
77624905 AAATGAAAATAAAATAAAAATAAAAATAAATA
1 AAATGAAAATAAAATAAAAATAAAAATAAA-A
*
77624937 AAAT-AAAATAAAATAAAAATAAGAATAAAA
1 AAATGAAAATAAAATAAAAATAAAAATAAAA
77624967 AAA
1 AAA
77624970 GATAGAAGGA
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 4 0.12
31 24 0.75
32 4 0.12
ACGTcount: A:0.80, C:0.00, G:0.03, T:0.17
Consensus pattern (31 bp):
AAATGAAAATAAAATAAAAATAAAAATAAAA
Found at i:77624957 original size:6 final size:6
Alignment explanation
Indices: 77624905--77624967 Score: 67
Period size: 6 Copynumber: 10.5 Consensus size: 6
77624895 AATAAAATTG
* *
77624905 AAATGA AAAT-A AAATAA AAATAA AAATAA ATAAAATA AAAT-A AAATAA
1 AAATAA AAATAA AAATAA AAATAA AAATAA A-AATA-A AAATAA AAATAA
*
77624953 AAATAA GAATAA AAA
1 AAATAA AAATAA AAA
77624968 AAGATAGAAG
Statistics
Matches: 49, Mismatches: 4, Indels: 8
0.80 0.07 0.13
Matches are distributed among these distances:
5 10 0.20
6 32 0.65
7 5 0.10
8 2 0.04
ACGTcount: A:0.79, C:0.00, G:0.03, T:0.17
Consensus pattern (6 bp):
AAATAA
Found at i:77628606 original size:5 final size:5
Alignment explanation
Indices: 77628596--77628624 Score: 51
Period size: 5 Copynumber: 6.0 Consensus size: 5
77628586 TGCTCTCTTT
77628596 TTTTC TTTTC TTTTC -TTTC TTTTC TTTTC
1 TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC
77628625 ACGAGCATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
4 4 0.17
5 19 0.83
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (5 bp):
TTTTC
Found at i:77628616 original size:14 final size:14
Alignment explanation
Indices: 77628591--77628624 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
77628581 ACATATGCTC
77628591 TCTTTT-TTTCTTT
1 TCTTTTCTTTCTTT
77628604 TCTTTTCTTTCTTT
1 TCTTTTCTTTCTTT
77628618 TCTTTTC
1 TCTTTTC
77628625 ACGAGCATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 6 0.30
14 14 0.70
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (14 bp):
TCTTTTCTTTCTTT
Found at i:77629112 original size:24 final size:24
Alignment explanation
Indices: 77629080--77629154 Score: 150
Period size: 24 Copynumber: 3.1 Consensus size: 24
77629070 ATTTAAATAA
77629080 TAGAACTTTATTCATACTGAATTT
1 TAGAACTTTATTCATACTGAATTT
77629104 TAGAACTTTATTCATACTGAATTT
1 TAGAACTTTATTCATACTGAATTT
77629128 TAGAACTTTATTCATACTGAATTT
1 TAGAACTTTATTCATACTGAATTT
77629152 TAG
1 TAG
77629155 CATACTAAAT
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 51 1.00
ACGTcount: A:0.33, C:0.12, G:0.09, T:0.45
Consensus pattern (24 bp):
TAGAACTTTATTCATACTGAATTT
Found at i:77632207 original size:5 final size:5
Alignment explanation
Indices: 77632197--77632277 Score: 71
Period size: 5 Copynumber: 15.8 Consensus size: 5
77632187 TATGTCTTTC
*
77632197 AAAAT AAAAT AAAATT GAAAT GAAAA- ATAAAT AAAAAT AAAA- ATAAAT
1 AAAAT AAAAT AAAA-T AAAAT -AAAAT A-AAAT -AAAAT AAAAT A-AAAT
77632245 AAAAT AAAAT -AAAT AAAAT AAGAAT AAAA- AAAA
1 AAAAT AAAAT AAAAT AAAAT AA-AAT AAAAT AAAA
77632278 GATAGAAGGA
Statistics
Matches: 65, Mismatches: 2, Indels: 19
0.76 0.02 0.22
Matches are distributed among these distances:
4 10 0.15
5 37 0.57
6 17 0.26
7 1 0.02
ACGTcount: A:0.78, C:0.00, G:0.04, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:77632248 original size:15 final size:15
Alignment explanation
Indices: 77632214--77632276 Score: 85
Period size: 14 Copynumber: 4.2 Consensus size: 15
77632204 AATAAAATTG
77632214 AAATGAAAAATAAATAA
1 AAAT-AAAAATAAAT-A
77632231 AAATAAAAATAAATA
1 AAATAAAAATAAATA
77632246 AAAT-AAAATAAATA
1 AAATAAAAATAAATA
*
77632260 AAATAAGAATAAA-A
1 AAATAAAAATAAATA
77632274 AAA
1 AAA
77632277 AGATAGAAGG
Statistics
Matches: 44, Mismatches: 1, Indels: 5
0.88 0.02 0.10
Matches are distributed among these distances:
14 18 0.41
15 12 0.27
16 10 0.23
17 4 0.09
ACGTcount: A:0.79, C:0.00, G:0.03, T:0.17
Consensus pattern (15 bp):
AAATAAAAATAAATA
Found at i:77635230 original size:13 final size:13
Alignment explanation
Indices: 77635212--77635239 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
77635202 TATGTGAAAT
77635212 TTAACGATATTGA
1 TTAACGATATTGA
77635225 TTAACGATATTGA
1 TTAACGATATTGA
77635238 TT
1 TT
77635240 GATACCAACA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.36, C:0.07, G:0.14, T:0.43
Consensus pattern (13 bp):
TTAACGATATTGA
Found at i:77636576 original size:13 final size:13
Alignment explanation
Indices: 77636554--77636586 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
77636544 AAGGGTTTGT
77636554 TTAT-TAAACTAA
1 TTATCTAAACTAA
77636566 TTATCTAAACTAA
1 TTATCTAAACTAA
*
77636579 TTAACTAA
1 TTATCTAA
77636587 TTTAATTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:77639541 original size:4 final size:5
Alignment explanation
Indices: 77639489--77639570 Score: 80
Period size: 5 Copynumber: 15.8 Consensus size: 5
77639479 TATGTCTTTC
*
77639489 AAAAT AAAAT --AAT AAAATT GAAAT GAAAAT AAAAT AAAAAT AAAA-
1 AAAAT AAAAT AAAAT AAAA-T AAAAT -AAAAT AAAAT -AAAAT AAAAT
77639534 ATAAAT AAAAT AAAAT AAAAT AAAAAT AAGAAT AAAA
1 A-AAAT AAAAT AAAAT AAAAT -AAAAT AA-AAT AAAA
77639571 AAAGATAGAA
Statistics
Matches: 66, Mismatches: 2, Indels: 18
0.77 0.02 0.21
Matches are distributed among these distances:
3 3 0.05
4 1 0.02
5 38 0.58
6 24 0.36
ACGTcount: A:0.77, C:0.00, G:0.04, T:0.20
Consensus pattern (5 bp):
AAAAT
Found at i:77639549 original size:31 final size:31
Alignment explanation
Indices: 77639509--77639573 Score: 105
Period size: 31 Copynumber: 2.1 Consensus size: 31
77639499 AATAAAATTG
77639509 AAATGAAAATAAAATAAAAATAAAAATAAATA
1 AAATGAAAATAAAATAAAAATAAAAATAAA-A
*
77639541 AAAT-AAAATAAAATAAAAATAAGAATAAAA
1 AAATGAAAATAAAATAAAAATAAAAATAAAA
77639571 AAA
1 AAA
77639574 GATAGAAGGA
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 4 0.12
31 24 0.75
32 4 0.12
ACGTcount: A:0.80, C:0.00, G:0.03, T:0.17
Consensus pattern (31 bp):
AAATGAAAATAAAATAAAAATAAAAATAAAA
Found at i:77639561 original size:6 final size:6
Alignment explanation
Indices: 77639509--77639571 Score: 67
Period size: 6 Copynumber: 10.5 Consensus size: 6
77639499 AATAAAATTG
* *
77639509 AAATGA AAAT-A AAATAA AAATAA AAATAA ATAAAATA AAAT-A AAATAA
1 AAATAA AAATAA AAATAA AAATAA AAATAA A-AATA-A AAATAA AAATAA
*
77639557 AAATAA GAATAA AAA
1 AAATAA AAATAA AAA
77639572 AAGATAGAAG
Statistics
Matches: 49, Mismatches: 4, Indels: 8
0.80 0.07 0.13
Matches are distributed among these distances:
5 10 0.20
6 32 0.65
7 5 0.10
8 2 0.04
ACGTcount: A:0.79, C:0.00, G:0.03, T:0.17
Consensus pattern (6 bp):
AAATAA
Found at i:77643210 original size:5 final size:5
Alignment explanation
Indices: 77643200--77643228 Score: 51
Period size: 5 Copynumber: 6.0 Consensus size: 5
77643190 TGCTCTCTTT
77643200 TTTTC TTTTC TTTTC -TTTC TTTTC TTTTC
1 TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC
77643229 ACGAGCATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
4 4 0.17
5 19 0.83
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (5 bp):
TTTTC
Found at i:77643220 original size:14 final size:14
Alignment explanation
Indices: 77643195--77643228 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
77643185 ACATATGCTC
77643195 TCTTTT-TTTCTTT
1 TCTTTTCTTTCTTT
77643208 TCTTTTCTTTCTTT
1 TCTTTTCTTTCTTT
77643222 TCTTTTC
1 TCTTTTC
77643229 ACGAGCATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 6 0.30
14 14 0.70
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (14 bp):
TCTTTTCTTTCTTT
Found at i:77643716 original size:24 final size:24
Alignment explanation
Indices: 77643684--77643758 Score: 150
Period size: 24 Copynumber: 3.1 Consensus size: 24
77643674 ATTTAAATAA
77643684 TAGAACTTTATTCATACTGAATTT
1 TAGAACTTTATTCATACTGAATTT
77643708 TAGAACTTTATTCATACTGAATTT
1 TAGAACTTTATTCATACTGAATTT
77643732 TAGAACTTTATTCATACTGAATTT
1 TAGAACTTTATTCATACTGAATTT
77643756 TAG
1 TAG
77643759 CATACTAAAT
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 51 1.00
ACGTcount: A:0.33, C:0.12, G:0.09, T:0.45
Consensus pattern (24 bp):
TAGAACTTTATTCATACTGAATTT
Found at i:77652062 original size:46 final size:46
Alignment explanation
Indices: 77652012--77652187 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
77652002 TGGTTGAGCA
77652012 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
77652058 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
77652103 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
77652151 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
77652188 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:77652168 original size:93 final size:93
Alignment explanation
Indices: 77652009--77652180 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
77651999 GGATGGTTGA
* *
77652009 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
77652074 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
77652102 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
77652167 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
77652181 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:77659150 original size:46 final size:46
Alignment explanation
Indices: 77659100--77659275 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
77659090 TGGTTGAGCA
*
77659100 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* * * *
77659146 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--ATG
*
77659191 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* * *
77659239 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
77659276 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 5 0.05
45 4 0.04
46 63 0.57
47 29 0.26
48 4 0.04
50 6 0.05
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
Found at i:77659256 original size:93 final size:93
Alignment explanation
Indices: 77659097--77659268 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
77659087 GGATGGTTGA
* * *
77659097 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
77659162 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
77659190 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
77659255 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
77659269 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:77659511 original size:24 final size:24
Alignment explanation
Indices: 77659479--77659526 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
77659469 GTATTGATAC
77659479 AACCATGATAAGGTAATAAGATGA
1 AACCATGATAAGGTAATAAGATGA
77659503 AACCATGATAAGGTAATAAGATGA
1 AACCATGATAAGGTAATAAGATGA
77659527 TGAAAAATGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.50, C:0.08, G:0.21, T:0.21
Consensus pattern (24 bp):
AACCATGATAAGGTAATAAGATGA
Found at i:77668593 original size:436 final size:435
Alignment explanation
Indices: 77667781--77668638 Score: 1680
Period size: 436 Copynumber: 2.0 Consensus size: 435
77667771 ACCTGGACTT
77667781 TGGCCTTTAGACCTTATAATTAACTGGGGATAAAATATAACACAAAAAGCCTTGTGGCTTAGTGG
1 TGGCCTTTAGACCTTATAATTAACTGGGGATAAAATATAACACAAAAAGCCTTGTGGCTTAGTGG
77667846 CAAGTAGCATGTGGAACATCTGAGGGGAGGCATGGATTCAAATCCATGGCAAGCAAGAAGCATTT
66 CAAGTAGCATGTGGAACATCTGAGGGGAGGCATGGATTCAAATCCATGGCAAGCAAGAAGCATTT
77667911 ATTTTGCTAACAGGGGGCGGCAAGAGTTGGTGTTGAATTTAAACTCTGATGTTGGAGGGATCCCA
131 ATTTTGCTAACAGGGGGCGGCAAGAGTTGGTGTTGAATTTAAACTCTGATGTTGGAGGGATCCCA
77667976 CATCGGGAAGCTAACATAAGAGTGGTTGCGAAGCTGGCTTTAAATAGAGGGAACCATGAGGAGAG
196 CATCGGGAAGCTAACATAAGAGTGGTTGCGAAGCTGGCTTTAAATAGAGGGAACCATGAGGAGAG
77668041 TAAAGGTACATTTCTTGGCTGATCCCTTTCGCTTTATGGCGTGCTCATTTGGGTTGGGCGTTGGC
261 TAAAGGTACATTTCTTGGCTGATCCCTTTCGCTTTATGGCGTGCTCATTTGGGTTGGGCGTTGGC
77668106 TAAGAGTGCTTGGAGAGTGGATTAACTCCAGTCTCCAATCAGGTCTATATTTCTCACTACTCAAG
326 TAAGAGTGCTTGGAGAGTGGATTAACTCCAGTCTCCAATCAGGTCTATATTTCTCACTACTCAAG
*
77668171 CTGTGGGATGGCTACTTCGGGCCACGATGGGCCGAAAGAGGCCATG
391 CTGTAGGATGGCTACTTCGGGCCACG-TGGGCCGAAAGAGGCCATG
77668217 TGGCCTTTAGACCTTATAATTAACTGGGGATAAAATATAACACAAAAAGCCTTGTGGCTTAGTGG
1 TGGCCTTTAGACCTTATAATTAACTGGGGATAAAATATAACACAAAAAGCCTTGTGGCTTAGTGG
77668282 CAAGTAGCATGTGGAACATCTGAGGGGAGGCATGGATTCAAATCCATGGCAAGCAAGAAGCATTT
66 CAAGTAGCATGTGGAACATCTGAGGGGAGGCATGGATTCAAATCCATGGCAAGCAAGAAGCATTT
77668347 ATTTTGCTAACAGGGGGCGGCAAGAGTTGGTGTTGAATTTAAACTCTGATGTTGGAGGGATCCCA
131 ATTTTGCTAACAGGGGGCGGCAAGAGTTGGTGTTGAATTTAAACTCTGATGTTGGAGGGATCCCA
77668412 CATCGGGAAGCTAACATAAGAGTGGTTGCGAAGCTGGCTTTAAATAGAGGGAACCATGAGGAGAG
196 CATCGGGAAGCTAACATAAGAGTGGTTGCGAAGCTGGCTTTAAATAGAGGGAACCATGAGGAGAG
77668477 TAAAGGTACATTTCTTGGCTGATCCCTTTCGCTTTATGGCGTGCTCATTTGGGTTGGGCGTTGGC
261 TAAAGGTACATTTCTTGGCTGATCCCTTTCGCTTTATGGCGTGCTCATTTGGGTTGGGCGTTGGC
*
77668542 TAAGAGTGCTTGGAGAGTGGATTAACTCCAGTCTCCAATCAGGTCTATATTTCTCACTACTCTAG
326 TAAGAGTGCTTGGAGAGTGGATTAACTCCAGTCTCCAATCAGGTCTATATTTCTCACTACTCAAG
*
77668607 CTGTAGGATGGCTACTTCGGGCCATGTGGGCC
391 CTGTAGGATGGCTACTTCGGGCCACGTGGGCC
77668639 CAATGGTCCT
Statistics
Matches: 419, Mismatches: 3, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
435 6 0.01
436 413 0.99
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.27
Consensus pattern (435 bp):
TGGCCTTTAGACCTTATAATTAACTGGGGATAAAATATAACACAAAAAGCCTTGTGGCTTAGTGG
CAAGTAGCATGTGGAACATCTGAGGGGAGGCATGGATTCAAATCCATGGCAAGCAAGAAGCATTT
ATTTTGCTAACAGGGGGCGGCAAGAGTTGGTGTTGAATTTAAACTCTGATGTTGGAGGGATCCCA
CATCGGGAAGCTAACATAAGAGTGGTTGCGAAGCTGGCTTTAAATAGAGGGAACCATGAGGAGAG
TAAAGGTACATTTCTTGGCTGATCCCTTTCGCTTTATGGCGTGCTCATTTGGGTTGGGCGTTGGC
TAAGAGTGCTTGGAGAGTGGATTAACTCCAGTCTCCAATCAGGTCTATATTTCTCACTACTCAAG
CTGTAGGATGGCTACTTCGGGCCACGTGGGCCGAAAGAGGCCATG
Found at i:77668887 original size:27 final size:27
Alignment explanation
Indices: 77668850--77669147 Score: 240
Period size: 27 Copynumber: 10.8 Consensus size: 27
77668840 ATACCTCCAA
* *
77668850 TTGTAAAATTACCAAAGTACCCCCGGT
1 TTGTAAAATTACCAAAATACCCCTGGT
* * *
77668877 TTATAAAATTACTCAAATATCCTCGATCCTAGT
1 TTGTAAAATTAC-CAAA-ATAC-C---CCTGGT
* * * *
77668910 TTGTAAAATTACTAGAATACCCTTCGT
1 TTGTAAAATTACCAAAATACCCCTGGT
* * *
77668937 TTATAAAATCAGCAAAATACCCCTGGT
1 TTGTAAAATTACCAAAATACCCCTGGT
* *
77668964 TTGTAAAATTACCAAAAAACCCTTGGT
1 TTGTAAAATTACCAAAATACCCCTGGT
**
77668991 TTACAAAATTACCAAAATACCCCTGGT
1 TTGTAAAATTACCAAAATACCCCTGGT
* *
77669018 TTGTAAAATTATCAAAATACCCCTAGT
1 TTGTAAAATTACCAAAATACCCCTGGT
*
77669045 TTGTAAAATTACCAAAATACCCCTGAT
1 TTGTAAAATTACCAAAATACCCCTGGT
* ** **
77669072 TTGTGAAATTACTGAAATA-CCCTCGAC
1 TTGTAAAATTACCAAAATACCCCT-GGT
*** **
77669099 TTGTAAAATTATTGAAATA-CCCTCGAC
1 TTGTAAAATTACCAAAATACCCCT-GGT
*
77669126 TTGTAAAATTACCAAAGTACCC
1 TTGTAAAATTACCAAAATACCC
77669148 TTATTTTATA
Statistics
Matches: 219, Mismatches: 44, Indels: 15
0.79 0.16 0.05
Matches are distributed among these distances:
26 4 0.02
27 185 0.84
28 6 0.03
29 2 0.01
30 2 0.01
31 3 0.01
32 2 0.01
33 15 0.07
ACGTcount: A:0.38, C:0.21, G:0.10, T:0.31
Consensus pattern (27 bp):
TTGTAAAATTACCAAAATACCCCTGGT
Found at i:77669297 original size:27 final size:27
Alignment explanation
Indices: 77669186--77669300 Score: 122
Period size: 27 Copynumber: 4.3 Consensus size: 27
77669176 CGATTTACAA
* *
77669186 AATTACTGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** * * *
77669213 AAACATCGAAATACCTCTGTATGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
77669240 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
77669267 AATTACCGAGATACCCTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
77669294 AATTACC
1 AATTACC
77669301 ATTTTACCCC
Statistics
Matches: 70, Mismatches: 18, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
27 70 1.00
ACGTcount: A:0.34, C:0.18, G:0.21, T:0.27
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:77669298 original size:54 final size:54
Alignment explanation
Indices: 77669184--77669299 Score: 144
Period size: 54 Copynumber: 2.1 Consensus size: 54
77669174 CTCGATTTAC
* * *
77669184 AAAATTACTGAAATACCCTTGTAGGGTAGAAACATCGAAATACCTCTGTATGGT
1 AAAATTACTGAAATACCCCTGTAGGGTAGAAACACCGAAATACCTCTGTAGGGT
* ** * *
77669238 AGAATTACTGAAATACCCCTGTAGGGTAGAATTACCGAGATACC-CTTGTGGGGT
1 AAAATTACTGAAATACCCCTGTAGGGTAGAAACACCGAAATACCTC-TGTAGGGT
77669292 AAAATTAC
1 AAAATTAC
77669300 CATTTTACCC
Statistics
Matches: 52, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
53 1 0.02
54 51 0.98
ACGTcount: A:0.35, C:0.17, G:0.21, T:0.27
Consensus pattern (54 bp):
AAAATTACTGAAATACCCCTGTAGGGTAGAAACACCGAAATACCTCTGTAGGGT
Found at i:77669844 original size:6 final size:6
Alignment explanation
Indices: 77669813--77669931 Score: 75
Period size: 6 Copynumber: 19.3 Consensus size: 6
77669803 TTGCATTCAC
* * * *
77669813 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATTTTG ATTTTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * *
77669862 -TTACCTG ATACTG ATTCTG ATTCTG ATTCTG -TCACCTG ATTCTG ATTTTG
1 ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG
*
77669912 ATTTTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG A-TTCTG AT
77669932 AATGTTTCTT
Statistics
Matches: 90, Mismatches: 12, Indels: 22
0.73 0.10 0.18
Matches are distributed among these distances:
5 6 0.07
6 71 0.79
7 10 0.11
8 3 0.03
ACGTcount: A:0.18, C:0.15, G:0.16, T:0.50
Consensus pattern (6 bp):
ATTCTG
Found at i:77669855 original size:31 final size:31
Alignment explanation
Indices: 77669817--77669922 Score: 176
Period size: 31 Copynumber: 3.4 Consensus size: 31
77669807 ATTCACATTC
77669817 TGATTTTGATTCTGTTACCTGATACTGATTT
1 TGATTTTGATTCTGTTACCTGATACTGATTT
*
77669848 TGATTTTGATTCTGTTACCTGATACTGATTC
1 TGATTTTGATTCTGTTACCTGATACTGATTT
* * *
77669879 TGATTCTGATTCTGTCACCTGATTCTGATTT
1 TGATTTTGATTCTGTTACCTGATACTGATTT
77669910 TGATTTTGATTCT
1 TGATTTTGATTCT
77669923 AGTTCTGATA
Statistics
Matches: 69, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 69 1.00
ACGTcount: A:0.18, C:0.15, G:0.16, T:0.51
Consensus pattern (31 bp):
TGATTTTGATTCTGTTACCTGATACTGATTT
Found at i:77669910 original size:62 final size:61
Alignment explanation
Indices: 77669813--77669947 Score: 191
Period size: 62 Copynumber: 2.2 Consensus size: 61
77669803 TTGCATTCAC
* * *
77669813 ATTCTGATTTTGATTCTGTTACCTGATACTGATTTTGATTTTGATTCT-GTTACCTGATACTG
1 ATTCTGATTCTGATTCTGTCACCTGATACTGATTTTGATTTTGATTCTAGTT--CTGATAATG
*
77669875 ATTCTGATTCTGATTCTGTCACCTGATTCTGATTTTGATTTTGATTCTAGTTCTGATAATG
1 ATTCTGATTCTGATTCTGTCACCTGATACTGATTTTGATTTTGATTCTAGTTCTGATAATG
* *
77669936 TTTCTTATTCTG
1 ATTCTGATTCTG
77669948 TAATGGGTTA
Statistics
Matches: 66, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
61 18 0.27
62 45 0.68
63 3 0.05
ACGTcount: A:0.19, C:0.15, G:0.16, T:0.51
Consensus pattern (61 bp):
ATTCTGATTCTGATTCTGTCACCTGATACTGATTTTGATTTTGATTCTAGTTCTGATAATG
Found at i:77672048 original size:27 final size:27
Alignment explanation
Indices: 77672015--77672306 Score: 334
Period size: 27 Copynumber: 10.8 Consensus size: 27
77672005 ATACCCCCAG
* *
77672015 TTGTAAAATTACCAAAGTACCCCCGGT
1 TTGTAAAATTACCAAAATACCCCTGGT
* * * *
77672042 TTATAAAATTACCCAAATA-TCCTCGAT
1 TTGTAAAATTACCAAAATACCCCT-GGT
* *
77672069 TTGTACAATTACCAAAATACCCTTGGT
1 TTGTAAAATTACCAAAATACCCCTGGT
**
77672096 TTACAAAATTACCAAAATACCCCTGGT
1 TTGTAAAATTACCAAAATACCCCTGGT
* * *
77672123 TTGTAAAATTACTAGAATACCCTTGGT
1 TTGTAAAATTACCAAAATACCCCTGGT
* *
77672150 TTATAAAATCACCAAAATACCCCTGGT
1 TTGTAAAATTACCAAAATACCCCTGGT
*
77672177 TTGTAAAATTACCAAAATACCCTTGGT
1 TTGTAAAATTACCAAAATACCCCTGGT
** * *
77672204 TTACAAAATTGCCAAAATACCCCTAGT
1 TTGTAAAATTACCAAAATACCCCTGGT
* *
77672231 TTGTAAAATTATCAAAATACCCCTAGT
1 TTGTAAAATTACCAAAATACCCCTGGT
*
77672258 TTGTAAAATTACCAAAATACCCCTGAT
1 TTGTAAAATTACCAAAATACCCCTGGT
* **
77672285 TTGTGAAATTACTGAAATACCC
1 TTGTAAAATTACCAAAATACCC
77672307 TCAACCTGTA
Statistics
Matches: 219, Mismatches: 44, Indels: 4
0.82 0.16 0.01
Matches are distributed among these distances:
26 2 0.01
27 215 0.98
28 2 0.01
ACGTcount: A:0.38, C:0.22, G:0.10, T:0.30
Consensus pattern (27 bp):
TTGTAAAATTACCAAAATACCCCTGGT
Found at i:77672130 original size:81 final size:80
Alignment explanation
Indices: 77672015--77672359 Score: 323
Period size: 81 Copynumber: 4.3 Consensus size: 80
77672005 ATACCCCCAG
* * * *
77672015 TTGTAAAATTACCAAAGTACCCCCGGTTTATAAAATTACCCAAATATCCTCGATTTGTACAATTA
1 TTGTAAAATTACCAAAATACCCCTGGTTTATAAAATTACCAAAATA-CCTCGATTTGTAAAATTA
*
77672080 CCAAAATACCCTTGGT
65 CCAAAATACCCCTGGT
** * * * * * * *
77672096 TTACAAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAGAATACCCTTGGTTTATAAAATCA
1 TTGTAAAATTACCAAAATACCCCTGGTTTATAAAATTACCAAAATA-CCTCGATTTGTAAAATTA
77672161 CCAAAATACCCCTGGT
65 CCAAAATACCCCTGGT
* * * * *
77672177 TTGTAAAATTACCAAAATACCCTTGGTTTACAAAATTGCCAAAATACCCCTAGTTTGTAAAATTA
1 TTGTAAAATTACCAAAATACCCCTGGTTTATAAAATTACCAAAATACCTCGA-TTTGTAAAATTA
* *
77672242 TCAAAATACCCCTAGT
65 CCAAAATACCCCTGGT
* * * ** * **
77672258 TTGTAAAATTACCAAAATACCCCTGATTTGTGAAATTACTGAAATACCCTCAACCTGTAAAATTA
1 TTGTAAAATTACCAAAATACCCCTGGTTTATAAAATTACCAAAATA-CCTCGATTTGTAAAATTA
** * **
77672323 TTAAAAGA-CCCTCGAC
65 CCAAAATACCCCT-GGT
*
77672339 TTGTAAAATTACCAAAGTACC
1 TTGTAAAATTACCAAAATACC
77672360 ATTGATTTAC
Statistics
Matches: 212, Mismatches: 49, Indels: 6
0.79 0.18 0.02
Matches are distributed among these distances:
80 6 0.03
81 202 0.95
82 4 0.02
ACGTcount: A:0.39, C:0.22, G:0.10, T:0.30
Consensus pattern (80 bp):
TTGTAAAATTACCAAAATACCCCTGGTTTATAAAATTACCAAAATACCTCGATTTGTAAAATTAC
CAAAATACCCCTGGT
Found at i:77672320 original size:27 final size:27
Alignment explanation
Indices: 77672290--77672350 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 27
77672280 CTGATTTGTG
* *
77672290 AAATTACTGAAATACCCTCAACCTGTA
1 AAATTACTAAAAGACCCTCAACCTGTA
* * *
77672317 AAATTATTAAAAGACCCTCGACTTGTA
1 AAATTACTAAAAGACCCTCAACCTGTA
77672344 AAATTAC
1 AAATTAC
77672351 CAAAGTACCA
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.43, C:0.21, G:0.08, T:0.28
Consensus pattern (27 bp):
AAATTACTAAAAGACCCTCAACCTGTA
Found at i:77672479 original size:53 final size:54
Alignment explanation
Indices: 77672397--77672510 Score: 167
Period size: 53 Copynumber: 2.1 Consensus size: 54
77672387 CTCGATTTAC
*
77672397 AAAATTACTGAAATACCCTTGTAGGGTAGAAATACCGAAATA-CCTTGTAGGGT
1 AAAATTACTGAAATACCCCTGTAGGGTAGAAATACCGAAATACCCTTGTAGGGT
* * * * *
77672450 AGAATTATTGAAATACCCCTGTAGGGTAGAATTACCGAGATACCCTTGTGGGGT
1 AAAATTACTGAAATACCCCTGTAGGGTAGAAATACCGAAATACCCTTGTAGGGT
77672504 AAAATTA
1 AAAATTA
77672511 GCATTTTACC
Statistics
Matches: 53, Mismatches: 7, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
53 37 0.70
54 16 0.30
ACGTcount: A:0.36, C:0.15, G:0.22, T:0.27
Consensus pattern (54 bp):
AAAATTACTGAAATACCCCTGTAGGGTAGAAATACCGAAATACCCTTGTAGGGT
Found at i:77672509 original size:27 final size:27
Alignment explanation
Indices: 77672397--77672510 Score: 133
Period size: 27 Copynumber: 4.3 Consensus size: 27
77672387 CTCGATTTAC
*
77672397 AAAATTACTGAAATACCCTTGTAGGGT
1 AAAATTACCGAAATACCCTTGTAGGGT
77672424 AGAAA-TACCGAAATA-CCTTGTAGGGT
1 A-AAATTACCGAAATACCCTTGTAGGGT
* ** *
77672450 AGAATTATTGAAATACCCCTGTAGGGT
1 AAAATTACCGAAATACCCTTGTAGGGT
* * *
77672477 AGAATTACCGAGATACCCTTGTGGGGT
1 AAAATTACCGAAATACCCTTGTAGGGT
77672504 AAAATTA
1 AAAATTA
77672511 GCATTTTACC
Statistics
Matches: 73, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
25 2 0.03
26 20 0.27
27 48 0.66
28 3 0.04
ACGTcount: A:0.36, C:0.15, G:0.22, T:0.27
Consensus pattern (27 bp):
AAAATTACCGAAATACCCTTGTAGGGT
Found at i:77672812 original size:26 final size:26
Alignment explanation
Indices: 77672757--77672835 Score: 133
Period size: 26 Copynumber: 3.0 Consensus size: 26
77672747 CTCGCTGCAA
77672757 TCTGGTGGCCTCA-CCACATATATCTGT
1 TCTGGTGGCCT-AGCCACA-ATATCTGT
77672784 TCTGGTGGCCTAGCCACAATATCTGT
1 TCTGGTGGCCTAGCCACAATATCTGT
77672810 TCTGGTGGCCTAGCCACAATATCTGT
1 TCTGGTGGCCTAGCCACAATATCTGT
77672836 ATTTGGTGAC
Statistics
Matches: 51, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
26 35 0.69
27 16 0.31
ACGTcount: A:0.19, C:0.28, G:0.22, T:0.32
Consensus pattern (26 bp):
TCTGGTGGCCTAGCCACAATATCTGT
Found at i:77672858 original size:53 final size:53
Alignment explanation
Indices: 77672757--77672858 Score: 118
Period size: 53 Copynumber: 1.9 Consensus size: 53
77672747 CTCGCTGCAA
* * *
77672757 TCTGGTGGCCTCACCACATATATCTGTTCTGGTGGCCTAGCCACAATATCTGT
1 TCTGGTGGCCTCACCACATATATCTGTTCTGGTGACCTAGACAAAATATCTGT
* * *
77672810 TCTGGTGGCCT-AGCCACA-ATATCTGTATTTGGTGACTTCGACAAAATAT
1 TCTGGTGGCCTCA-CCACATATATCTGT-TCTGGTGACCTAGACAAAATAT
77672859 TTGGCAGCCT
Statistics
Matches: 41, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
52 9 0.22
53 32 0.78
ACGTcount: A:0.23, C:0.25, G:0.21, T:0.32
Consensus pattern (53 bp):
TCTGGTGGCCTCACCACATATATCTGTTCTGGTGACCTAGACAAAATATCTGT
Found at i:77673015 original size:31 final size:31
Alignment explanation
Indices: 77672980--77673094 Score: 160
Period size: 31 Copynumber: 3.7 Consensus size: 31
77672970 TTGCATTCAC
*
77672980 ATTCTGATTTTGATTCTGTTACCTGATATTG
1 ATTCTGATTCTGATTCTGTTACCTGATATTG
* * *
77673011 ATTCTGATTTTGATTCTGTTACCTGATACTA
1 ATTCTGATTCTGATTCTGTTACCTGATATTG
*
77673042 ATTCTGATTCTGATTCTGTCACCTGAT-TCTG
1 ATTCTGATTCTGATTCTGTTACCTGATAT-TG
77673073 ATTCTGATTCTGATTCTAGTTA
1 ATTCTGATTCTGATTCT-GTTA
77673095 TGATAATGTT
Statistics
Matches: 75, Mismatches: 7, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
31 72 0.96
32 3 0.04
ACGTcount: A:0.20, C:0.17, G:0.15, T:0.49
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTTACCTGATATTG
Found at i:77673018 original size:6 final size:6
Alignment explanation
Indices: 77672980--77673089 Score: 84
Period size: 6 Copynumber: 17.8 Consensus size: 6
77672970 TTGCATTCAC
* *
77672980 ATTCTG ATTTTG ATTCTG -TTACCTG ATAT-TG ATTCTG ATTTTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG AT-TCTG ATTCTG ATTCTG ATTCTG
* * *
77673029 -TTACCTG ATACTA ATTCTG ATTCTG ATTCTG -TCACCTG ATTCTG ATTCTG
1 ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG
77673079 ATTCTG ATTCT
1 ATTCTG ATTCT
77673090 AGTTATGATA
Statistics
Matches: 83, Mismatches: 10, Indels: 22
0.72 0.09 0.19
Matches are distributed among these distances:
5 6 0.07
6 64 0.77
7 9 0.11
8 3 0.04
9 1 0.01
ACGTcount: A:0.19, C:0.17, G:0.15, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:77673098 original size:18 final size:18
Alignment explanation
Indices: 77672980--77673089 Score: 57
Period size: 19 Copynumber: 5.9 Consensus size: 18
77672970 TTGCATTCAC
*
77672980 ATTCTGATTTTGATTCTG
1 ATTCTGATTATGATTCTG
77672998 -TTACCTGA-TATTGATTCTG
1 ATT--CTGATTA-TGATTCTG
* *
77673017 ATTTTGATTCTG-TTACCTG
1 ATTCTGATTATGATT--CTG
* * *
77673036 ATACTAATTCTGATTCTG
1 ATTCTGATTATGATTCTG
*
77673054 ATTCTG-TCACCTGATTCTG
1 ATTCTGATTA--TGATTCTG
*
77673073 ATTCTGATTCTGATTCT
1 ATTCTGATTATGATTCT
77673090 AGTTATGATA
Statistics
Matches: 69, Mismatches: 12, Indels: 22
0.67 0.12 0.21
Matches are distributed among these distances:
17 5 0.07
18 20 0.29
19 39 0.57
20 5 0.07
ACGTcount: A:0.19, C:0.17, G:0.15, T:0.49
Consensus pattern (18 bp):
ATTCTGATTATGATTCTG
Found at i:77675700 original size:47 final size:47
Alignment explanation
Indices: 77675631--77676394 Score: 1213
Period size: 47 Copynumber: 16.1 Consensus size: 47
77675621 GAAATGATAG
*
77675631 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGAGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
77675678 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * *
77675725 TAGGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
77675772 TAGGGCCTAATGGTCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
77675819 TAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
77675866 TAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
77675913 TAAGGCCTAATGACCGATGTGATGAATGTGAAAGTGTATATATGAGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
77675960 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
77676007 TAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGAGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
77676054 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
*
77676103 TAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
77676152 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAA--GTGTATATATGTGA
77676201 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
77676248 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * *
77676295 TAAGGCCCAATGGCCAATGTGATGAATGTGGAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
* * * * * * * *
77676344 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
77676391 TAAG
1 TAAG
77676395 TCCCGAAGGG
Statistics
Matches: 671, Mismatches: 40, Indels: 12
0.93 0.06 0.02
Matches are distributed among these distances:
47 494 0.74
49 174 0.26
51 3 0.00
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.28
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:77676569 original size:37 final size:37
Alignment explanation
Indices: 77676513--77676591 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
77676503 CCGAGCTCTA
* ** *
77676513 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGAAGATTATGTCCGGGT
*
77676550 AAGACCCGATAACTTCGTGTGAAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGAAGATTATGTCCGGGT
77676587 AAGAC
1 AAGAC
77676592 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGAAGATTATGTCCGGGT
Found at i:77678358 original size:40 final size:40
Alignment explanation
Indices: 77678269--77678491 Score: 271
Period size: 40 Copynumber: 5.7 Consensus size: 40
77678259 TTGAATGCTG
* *
77678269 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAA-A
* * *
77678308 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
77678348 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
77678387 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
77678427 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
77678468 -CAGGGCTATGTCCCGAA-GCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
77678492 AACGAGGAGC
Statistics
Matches: 164, Mismatches: 13, Indels: 14
0.86 0.07 0.07
Matches are distributed among these distances:
39 60 0.37
40 94 0.57
41 10 0.06
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:77678404 original size:79 final size:80
Alignment explanation
Indices: 77678269--77678491 Score: 271
Period size: 79 Copynumber: 2.8 Consensus size: 80
77678259 TTGAATGCTG
* * *
77678269 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATATCCGGACTAAGAT-CCGAAGGCA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAA-ATCCGGGCTAAG-TCCCGAAGGCA
*
77678330 TTTGTGCGAGATACTAAT
63 TTTGTGCGAGATACTAAA
*
77678348 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTT
*
77678412 GTGCGAGTTACTAAA
66 GTGCGAGATACTAAA
* * * *
77678427 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAA-CAGGGCTATGTCCCGAA-GCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AATCCGGGCTAAGTCCCGAAGGCATT
77678490 TG
65 TG
77678492 AACGAGGAGC
Statistics
Matches: 127, Mismatches: 11, Indels: 12
0.85 0.07 0.08
Matches are distributed among these distances:
78 10 0.08
79 68 0.54
80 47 0.37
81 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTT
GTGCGAGATACTAAA
Found at i:77700674 original size:22 final size:22
Alignment explanation
Indices: 77700646--77700767 Score: 61
Period size: 22 Copynumber: 5.3 Consensus size: 22
77700636 TTCCACATCC
77700646 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
** * * *
77700668 ATCACATATATACACTTTC-ACATT
1 ATCACAT-T-GGC-CATTCGGCCTT
77700692 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
* * * *
77700715 ATCTCATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
77700739 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
77700762 ATCACA
1 ATCACA
77700768 CATACACATG
Statistics
Matches: 70, Mismatches: 18, Indels: 24
0.62 0.16 0.21
Matches are distributed among these distances:
22 26 0.37
23 12 0.17
24 12 0.17
25 20 0.29
ACGTcount: A:0.25, C:0.30, G:0.11, T:0.34
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:77700681 original size:47 final size:47
Alignment explanation
Indices: 77700618--77700914 Score: 445
Period size: 47 Copynumber: 6.3 Consensus size: 47
77700608 CCCTTCGGGA
* * *
77700618 CTTATCACATTTATACACT-TCCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACA-TGTTCACATTCATCACATTGGCCATTCGGC
77700665 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACA-TGTTCACATTCATCACATTGGCCATTCGGC
* *
77700712 CTTATCTCATATATGCATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
* *
77700759 CTTATCACACATACACATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
* *
77700806 CTTATCACACATACACATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
* * *
77700853 CTTATCACACATACACATGTTCACATTCATCACATTGGCCACTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
*
77700900 CCTATCACATATATA
1 CTTATCACATATATA
77700915 TACTTGTACA
Statistics
Matches: 236, Mismatches: 13, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
46 1 0.00
47 235 1.00
ACGTcount: A:0.27, C:0.31, G:0.10, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
Found at i:77704316 original size:40 final size:40
Alignment explanation
Indices: 77704259--77704739 Score: 768
Period size: 40 Copynumber: 12.1 Consensus size: 40
77704249 CGAATACACG
* * *
77704259 TCACTAGCATGATTGCTCTTCGGGACCTAGCCCGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* * * ** * *
77704299 ACACCAGCACGAATGCTCTTCGGGGTTTAGCACGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* * *
77704339 TCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* *
77704379 TCACTAGCACGAATGCTCTTCGAGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
77704419 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
*
77704459 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGGTACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
77704499 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
77704539 TCACTAGCATGAATGCTCTTCGGGACTTAG-CCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
77704578 TCACTAGCATGAATGCTCTTCGGGACTTAGCCGCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCC-CGGATACA
*
77704619 TCACTAGCATGGATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
*
77704659 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
*
77704699 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT-CA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
77704738 TC
1 TC
77704740 GTCGAGACCT
Statistics
Matches: 413, Mismatches: 26, Indels: 5
0.93 0.06 0.01
Matches are distributed among these distances:
39 43 0.10
40 331 0.80
41 39 0.09
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
Found at i:77704655 original size:23 final size:23
Alignment explanation
Indices: 77704629--77704735 Score: 58
Period size: 23 Copynumber: 5.2 Consensus size: 23
77704619 TCACTAGCAT
77704629 GGATGCTCTTCGGGACTTAGCCC
1 GGATGCTCTTCGGGACTTAGCCC
* * *
77704652 GGAT--ACATC---AC-TAGCAC
1 GGATGCTCTTCGGGACTTAGCCC
*
77704669 GAATGCTCTTCGGGACTTAGCCC
1 GGATGCTCTTCGGGACTTAGCCC
* * *
77704692 GGAT--ACATC---AC-TAGCAC
1 GGATGCTCTTCGGGACTTAGCCC
*
77704709 GAATGCTCTTCGGGACTTAGCCC
1 GGATGCTCTTCGGGACTTAGCCC
77704732 GGAT
1 GGAT
77704736 CATCGTCGAG
Statistics
Matches: 56, Mismatches: 16, Indels: 24
0.58 0.17 0.25
Matches are distributed among these distances:
17 16 0.29
18 4 0.07
19 6 0.11
21 6 0.11
22 4 0.07
23 20 0.36
ACGTcount: A:0.22, C:0.29, G:0.25, T:0.23
Consensus pattern (23 bp):
GGATGCTCTTCGGGACTTAGCCC
Found at i:77704835 original size:38 final size:38
Alignment explanation
Indices: 77704793--77704867 Score: 107
Period size: 38 Copynumber: 2.0 Consensus size: 38
77704783 GAATTTTAAT
*
77704793 CCGGACATAATCTCTGT-ACATAGCCATCGGGTCTTTAC
1 CCGGACATAATCTCT-TCACATAGCCAGCGGGTCTTTAC
* *
77704831 CCGGACATAATCTCTTCATATAGTCAGCGGGTCTTTA
1 CCGGACATAATCTCTTCACATAGCCAGCGGGTCTTTA
77704868 AACTCGGATT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
37 1 0.03
38 32 0.97
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.31
Consensus pattern (38 bp):
CCGGACATAATCTCTTCACATAGCCAGCGGGTCTTTAC
Found at i:77707345 original size:22 final size:22
Alignment explanation
Indices: 77707317--77707438 Score: 70
Period size: 22 Copynumber: 5.3 Consensus size: 22
77707307 TTCCACATCC
77707317 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
** * * *
77707339 ATCACATATATACACTTTC-ACATT
1 ATCACAT-T-GGC-CATTCGGCCTT
77707363 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
* * *
77707386 ATCTCACATTTG-CATGTTC-ACATT
1 A--TCACATTGGCCA--TTCGGCCTT
77707410 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
77707433 ATCACA
1 ATCACA
77707439 CATACACATG
Statistics
Matches: 72, Mismatches: 16, Indels: 24
0.64 0.14 0.21
Matches are distributed among these distances:
22 21 0.29
23 18 0.25
24 18 0.25
25 15 0.21
ACGTcount: A:0.25, C:0.30, G:0.11, T:0.34
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:77707352 original size:47 final size:47
Alignment explanation
Indices: 77707289--77707541 Score: 343
Period size: 47 Copynumber: 5.4 Consensus size: 47
77707279 CCCTTCGGGA
* * *
77707289 CTTATCACATTTATACACTTCCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
77707336 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * * *
77707383 CTTATCTCACATTTGCA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
77707430 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
77707477 CTTATCAC--ACATACACTTTCACATTCATCACATTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
77707522 CCTATCACATATATATACTT
1 CTTATCACATATATACACTT
77707542 GTACATCAAT
Statistics
Matches: 185, Mismatches: 17, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
45 39 0.21
46 2 0.01
47 144 0.78
ACGTcount: A:0.26, C:0.32, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:77712225 original size:47 final size:47
Alignment explanation
Indices: 77712152--77712292 Score: 164
Period size: 47 Copynumber: 3.0 Consensus size: 47
77712142 AGGGTAAGGT
* *
77712152 GCCGATGCCATGTCCTAGACACGGTCTTACACTGGCTCATATCTCAA
1 GCCGATGCCATGTCCTAGACATGGTCTTACACTGGCTTATATCTCAA
* * *
77712199 GTCGATGCCATGTCCCAGACATGGTCTTACACT-GATTATCATCTCGTAA
1 GCCGATGCCATGTCCTAGACATGGTCTTACACTGGCTTAT-ATCTC--AA
* *
77712248 -CCGATG-CATGTCGTAGACAT-GTCTTACACTGGCTTACATCTCAA
1 GCCGATGCCATGTCCTAGACATGGTCTTACACTGGCTTATATCTCAA
77712292 G
1 G
77712293 GCTAATGCAT
Statistics
Matches: 79, Mismatches: 10, Indels: 12
0.78 0.10 0.12
Matches are distributed among these distances:
44 2 0.03
46 19 0.24
47 51 0.65
48 5 0.06
49 2 0.03
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.28
Consensus pattern (47 bp):
GCCGATGCCATGTCCTAGACATGGTCTTACACTGGCTTATATCTCAA
Found at i:77716120 original size:40 final size:40
Alignment explanation
Indices: 77716071--77716146 Score: 134
Period size: 40 Copynumber: 1.9 Consensus size: 40
77716061 TTATTGCTTC
*
77716071 GGCTATAAATAGCACTTAGTGTGCGTATTAGAATAGGTTT
1 GGCTATAAATAGCACTTAGTGTGCGAATTAGAATAGGTTT
*
77716111 GGCTCTAAATAGCACTTAGTGTGCGAATTAGAATAG
1 GGCTATAAATAGCACTTAGTGTGCGAATTAGAATAG
77716147 CTTCAGCTAT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 34 1.00
ACGTcount: A:0.32, C:0.12, G:0.25, T:0.32
Consensus pattern (40 bp):
GGCTATAAATAGCACTTAGTGTGCGAATTAGAATAGGTTT
Found at i:77716166 original size:40 final size:40
Alignment explanation
Indices: 77716066--77716156 Score: 128
Period size: 40 Copynumber: 2.3 Consensus size: 40
77716056 TTTCATTATT
* *
77716066 GCTTCGGCTATAAATAGCACTTAGTGTGCGTATTAGAATA
1 GCTTCAGCTATAAATAGCACTTAGTGTGCGAATTAGAATA
* ** *
77716106 GGTTTGGCTCTAAATAGCACTTAGTGTGCGAATTAGAATA
1 GCTTCAGCTATAAATAGCACTTAGTGTGCGAATTAGAATA
77716146 GCTTCAGCTAT
1 GCTTCAGCTAT
77716157 CTATGGCACT
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 43 1.00
ACGTcount: A:0.29, C:0.15, G:0.23, T:0.33
Consensus pattern (40 bp):
GCTTCAGCTATAAATAGCACTTAGTGTGCGAATTAGAATA
Found at i:77717771 original size:48 final size:48
Alignment explanation
Indices: 77717700--77717880 Score: 281
Period size: 48 Copynumber: 3.8 Consensus size: 48
77717690 TCTCATATCG
* * ****
77717700 ATGCCATGTCCCAGACATGGTCTTACACAAAATCACATATCGATGCCA
1 ATGCCATATCCCAGATATGGTCTTACATGGGATCACATATCGATGCCA
* *
77717748 ATGCCATATCCCGGATATGGTCTTACATGGGATCACATATCGATGGCA
1 ATGCCATATCCCAGATATGGTCTTACATGGGATCACATATCGATGCCA
*
77717796 ATGCCATATCCTAGATATGGTCTTACATGGGATCACATATCGATGCCA
1 ATGCCATATCCCAGATATGGTCTTACATGGGATCACATATCGATGCCA
77717844 ATGCCATATCCCAGATATGGTCTTACATGGGATCACA
1 ATGCCATATCCCAGATATGGTCTTACATGGGATCACA
77717881 CATAACCCTA
Statistics
Matches: 121, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 121 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.27
Consensus pattern (48 bp):
ATGCCATATCCCAGATATGGTCTTACATGGGATCACATATCGATGCCA
Found at i:77725351 original size:13 final size:13
Alignment explanation
Indices: 77725333--77725367 Score: 70
Period size: 13 Copynumber: 2.7 Consensus size: 13
77725323 CATTGGTGCA
77725333 CACGGCCATGTTG
1 CACGGCCATGTTG
77725346 CACGGCCATGTTG
1 CACGGCCATGTTG
77725359 CACGGCCAT
1 CACGGCCAT
77725368 TTCATTCTTC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.17, C:0.34, G:0.29, T:0.20
Consensus pattern (13 bp):
CACGGCCATGTTG
Found at i:77734866 original size:40 final size:40
Alignment explanation
Indices: 77734794--77735015 Score: 315
Period size: 40 Copynumber: 5.6 Consensus size: 40
77734784 AACTCACGTA
* * *
77734794 CCTTCGGGATTTAG-CCGGATATAG-CAAATCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
* *
77734833 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
77734873 CCTTCGGGACTTAG-CTGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
* *
77734912 CCTTCGGGTCTTAGCCCGGATATCGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
77734952 CCTTCGGGACTTAACCCGGATATAGTCACTAGCACAAAGTG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAA-TG
*
77734993 CCTTCGGGTCTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
77735016 CATCCGAATA
Statistics
Matches: 165, Mismatches: 14, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
39 48 0.29
40 94 0.57
41 23 0.14
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:77734925 original size:79 final size:79
Alignment explanation
Indices: 77734794--77735015 Score: 329
Period size: 79 Copynumber: 2.8 Consensus size: 79
77734784 AACTCACGTA
* * * *
77734794 CCTTCGGGATTTAGCCGGATATAG-CAAATCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
1 CCTTCGGGACTTAGCCGGATATAGTC-ACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAG
*
77734858 TAACTCGCACAAATG
65 TAACTAGCACAAATG
* *
77734873 CCTTCGGGACTTAGCTGGATATAGTCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATCGT
1 CCTTCGGGACTTAGCCGGATATAGTCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
*
77734938 CACTAGCACAAATG
66 AACTAGCACAAATG
*
77734952 CCTTCGGGACTTAACCCGGATATAGTCACTAGCACAAAGTGCCTTCGGGTCTTAGCCCGGATAT
1 CCTTCGGGACTT-AGCCGGATATAGTCACTAGCACAAA-TGCCTTCGGGTCTTAGCCCGGATAT
77735016 CATCCGAATA
Statistics
Matches: 130, Mismatches: 10, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
79 81 0.62
80 24 0.18
81 25 0.19
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (79 bp):
CCTTCGGGACTTAGCCGGATATAGTCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
AACTAGCACAAATG
Found at i:77740775 original size:34 final size:34
Alignment explanation
Indices: 77740732--77740800 Score: 138
Period size: 34 Copynumber: 2.0 Consensus size: 34
77740722 ACGGAGTAAG
77740732 CAATTTATGCTTAGTAAGTTTTGAGCAAGGGATT
1 CAATTTATGCTTAGTAAGTTTTGAGCAAGGGATT
77740766 CAATTTATGCTTAGTAAGTTTTGAGCAAGGGATT
1 CAATTTATGCTTAGTAAGTTTTGAGCAAGGGATT
77740800 C
1 C
77740801 CCAGCACAAC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.29, C:0.10, G:0.23, T:0.38
Consensus pattern (34 bp):
CAATTTATGCTTAGTAAGTTTTGAGCAAGGGATT
Found at i:77741259 original size:40 final size:39
Alignment explanation
Indices: 77741107--77741328 Score: 229
Period size: 40 Copynumber: 5.6 Consensus size: 39
77741097 GCTACTCGTT
* *
77741107 CAAATGCTCTTCGAGACATAG-CCGG-TATAGTAACTCGCA
1 CAAATGC-CTTCG-GACTTAGCCCGGATTTAGTAACTCGCA
* * *
77741146 CAAATG-CTTCGGGACTTA-ACCAGATTTAGTAACTTGCA
1 CAAATGCCTTC-GGACTTAGCCCGGATTTAGTAACTCGCA
*
77741184 CAAATGCCTTCGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGACTTAGCCCGGATTTAGTAACTCGCA
* *
77741223 CAAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTCGTA
1 CAAATGCCTTCGGA-CTTAGCCCGGATTTAGTAACTCGCA
* * * * *
77741263 CAAATGCCTTCGGATCTTAGTCCGGATATGGTCACCTAGCA
1 CAAATGCCTTCGGA-CTTAGCCCGGATTTAGT-AACTCGCA
77741304 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTC-GGACTTAGCCCGGA
77741329 CATCATTCAA
Statistics
Matches: 159, Mismatches: 16, Indels: 15
0.84 0.08 0.08
Matches are distributed among these distances:
37 12 0.08
38 26 0.16
39 41 0.26
40 68 0.43
41 12 0.08
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.26
Consensus pattern (39 bp):
CAAATGCCTTCGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:77741268 original size:79 final size:76
Alignment explanation
Indices: 77741100--77741321 Score: 216
Period size: 77 Copynumber: 2.8 Consensus size: 76
77741090 GGATATAGCT
* * *
77741100 ACTCGTTCAAATGCTCTTCGAGACAT-AGCCGGTATAGTAACTCGCACAAATGCTTCGGGACTTA
1 ACTCGTACAAATGC-CTTCG-GACTTAACCCGGTATAGTAACTCGCACAAATGCTTCGGGACTTA
77741164 ACCAGATTTAGTA
64 ACCAGATTTAGTA
* * *
77741177 ACTTGCACAAATGCCTTCGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTC-GGATCTT
1 ACTCGTACAAATGCCTTCGGACTTAACCCGG-TATAGTAACTCGCACAAATG-CTTCGGGA-CTT
* *
77741241 AGTCCGGATTTAGTA
63 A-ACCAGATTTAGTA
** * * *
77741256 ACTCGTACAAATGCCTTCGGATCTTAGTCCGGATATGGTCACCTAGCACAAA-GCCTTCGGGACT
1 ACTCGTACAAATGCCTTCGGA-CTTAACCCGG-TATAGT-AACTCGCACAAATG-CTTCGGGACT
77741320 TA
62 TA
77741322 GCCCGGACAT
Statistics
Matches: 121, Mismatches: 16, Indels: 13
0.81 0.11 0.09
Matches are distributed among these distances:
75 4 0.03
76 10 0.08
77 33 0.27
78 8 0.07
79 30 0.25
80 23 0.19
81 13 0.11
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.27
Consensus pattern (76 bp):
ACTCGTACAAATGCCTTCGGACTTAACCCGGTATAGTAACTCGCACAAATGCTTCGGGACTTAAC
CAGATTTAGTA
Found at i:77745233 original size:49 final size:49
Alignment explanation
Indices: 77745170--77745344 Score: 242
Period size: 49 Copynumber: 3.5 Consensus size: 49
77745160 CTGGTATGCA
* * *
77745170 TAGTAGCCTACACTTAGTACTACACATGCGACCAATAATCTGGTACATG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCTGGTACACG
* * * * * * *
77745219 TAGTAGCCTGCACTTAGTACTACACAAGTGATCATAGTTTTCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCA-A-TTATCTGGTACACG
77745270 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCTGGTACACG
77745319 TAGTAGCCTGCACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
77745345 CGTGACCTCA
Statistics
Matches: 107, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
49 66 0.62
50 2 0.02
51 39 0.36
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCTGGTACACG
Found at i:77745288 original size:100 final size:100
Alignment explanation
Indices: 77745162--77745349 Score: 331
Period size: 100 Copynumber: 1.9 Consensus size: 100
77745152 GAAGCTATCT
* *
77745162 GGTATGCATAGTAGCCTACACTTAGTACTACACATGCGACCAATAATCTGGTACATGTAGTAGCC
1 GGTACGCATAGTAGCCTACACTTAGTACTACACATGCGACCAATAATCTGGTACACGTAGTAGCC
77745227 TGCACTTAGTACTACACAAGTGATCATAGTTTTCG
66 TGCACTTAGTACTACACAAGTGATCATAGTTTTCG
* *
77745262 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCTGGTACACGTAGTAGCC
1 GGTACGCATAGTAGCCTACACTTAGTACTACACATGCGACCAATAATCTGGTACACGTAGTAGCC
*
77745327 TGCACTTAGTACTACACACGTGA
66 TGCACTTAGTACTACACAAGTGA
77745350 CCTCACAATA
Statistics
Matches: 83, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
100 83 1.00
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27
Consensus pattern (100 bp):
GGTACGCATAGTAGCCTACACTTAGTACTACACATGCGACCAATAATCTGGTACACGTAGTAGCC
TGCACTTAGTACTACACAAGTGATCATAGTTTTCG
Found at i:77748345 original size:29 final size:28
Alignment explanation
Indices: 77748290--77748404 Score: 113
Period size: 29 Copynumber: 4.0 Consensus size: 28
77748280 GTTAGCATGA
* *
77748290 ATATGAATGTGATTGGGCCTAACGGGCC
1 ATATAAATGTGATTGGGCCTAATGGGCC
77748318 ATATAAATGTGACTTGGGCCTAATGGGCC
1 ATATAAATGTGA-TTGGGCCTAATGGGCC
* * * *
77748347 ACATACAGGTGATTTGGGTCTAATGGGCC
1 ATATAAATGTGA-TTGGGCCTAATGGGCC
* * * * *
77748376 ATATGAATATGAATGGTCTTAATGGGCC
1 ATATAAATGTGATTGGGCCTAATGGGCC
77748404 A
1 A
77748405 GATGCAGGCA
Statistics
Matches: 70, Mismatches: 16, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
28 24 0.34
29 46 0.66
ACGTcount: A:0.28, C:0.16, G:0.29, T:0.28
Consensus pattern (28 bp):
ATATAAATGTGATTGGGCCTAATGGGCC
Found at i:77749515 original size:17 final size:18
Alignment explanation
Indices: 77749483--77749516 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
77749473 TTTAAGAAGG
77749483 GTTTTCAATGAAAACACA
1 GTTTTCAATGAAAACACA
*
77749501 GTTTTCACT-AAAACAC
1 GTTTTCAATGAAAACAC
77749517 TTCAATGTGA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.41, C:0.21, G:0.09, T:0.29
Consensus pattern (18 bp):
GTTTTCAATGAAAACACA
Found at i:77752811 original size:17 final size:18
Alignment explanation
Indices: 77752778--77752813 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
77752768 TACAGGCCAG
77752778 AATGGGCTAAATGGGCCC
1 AATGGGCTAAATGGGCCC
*
77752796 AATGGGCT-ATTGGGCCC
1 AATGGGCTAAATGGGCCC
77752813 A
1 A
77752814 TAATAGGGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 9 0.53
18 8 0.47
ACGTcount: A:0.25, C:0.22, G:0.33, T:0.19
Consensus pattern (18 bp):
AATGGGCTAAATGGGCCC
Found at i:77752980 original size:57 final size:57
Alignment explanation
Indices: 77752879--77752994 Score: 144
Period size: 57 Copynumber: 2.0 Consensus size: 57
77752869 GAATATGAAT
* * * *
77752879 GTGATTGGTCCTAACGGGCCATATAAATGTGATTTGGGCCTAATGGGCCATATACAG
1 GTGATTGGGCCTAACGGGCCATATAAATATGATATGGGCCTAATGGGCCAGATACAG
* * * *
77752936 GTGATTTGGGCCTAATGGGCCATATGAATATGA-ATGGGCTTAATGGGCCAGATGCAG
1 GTGA-TTGGGCCTAACGGGCCATATAAATATGATATGGGCCTAATGGGCCAGATACAG
77752993 GT
1 GT
77752995 CTGTGAATTT
Statistics
Matches: 50, Mismatches: 8, Indels: 2
0.83 0.13 0.03
Matches are distributed among these distances:
57 26 0.52
58 24 0.48
ACGTcount: A:0.26, C:0.16, G:0.31, T:0.28
Consensus pattern (57 bp):
GTGATTGGGCCTAACGGGCCATATAAATATGATATGGGCCTAATGGGCCAGATACAG
Found at i:77752982 original size:28 final size:29
Alignment explanation
Indices: 77752871--77752985 Score: 137
Period size: 29 Copynumber: 4.0 Consensus size: 29
77752861 GTGAGCATGA
* *
77752871 ATATGAATGTGA-TTGGTCCTAACGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
77752899 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
77752928 ATAT-ACAGGTGATTTGGGCCTAATGGGCC
1 ATATGA-ATGTGATTTGGGCCTAATGGGCC
* * *
77752957 ATATGAATATGA-ATGGGCTTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
77752985 A
1 A
77752986 GATGCAGGTC
Statistics
Matches: 76, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
28 27 0.36
29 48 0.63
30 1 0.01
ACGTcount: A:0.28, C:0.15, G:0.29, T:0.29
Consensus pattern (29 bp):
ATATGAATGTGATTTGGGCCTAATGGGCC
Found at i:77776264 original size:56 final size:56
Alignment explanation
Indices: 77776173--77776340 Score: 225
Period size: 56 Copynumber: 3.0 Consensus size: 56
77776163 TCTTACATGT
** * *
77776173 AATCACATATCGATGCC-ACTGTCCTAGACAG-GGTCTTACTCGTACAAATATATC-A
1 AATCACATATCGATGCCAAC-GTATTAAAC-GTGGTCTTACTCGCACAAATATATCGA
*
77776228 GAATCACATATCGATGCCAACGTATTAAACGTGGTCTTACTCGCACATATATATCGA
1 -AATCACATATCGATGCCAACGTATTAAACGTGGTCTTACTCGCACAAATATATCGA
* *
77776285 AATCACATATCGATGCCAACGTATTAAACGTGGTCTTACTCACACACATATATCGA
1 AATCACATATCGATGCCAACGTATTAAACGTGGTCTTACTCGCACAAATATATCGA
77776341 TGCCATGGTC
Statistics
Matches: 102, Mismatches: 7, Indels: 6
0.89 0.06 0.05
Matches are distributed among these distances:
55 1 0.01
56 98 0.96
57 3 0.03
ACGTcount: A:0.34, C:0.24, G:0.14, T:0.27
Consensus pattern (56 bp):
AATCACATATCGATGCCAACGTATTAAACGTGGTCTTACTCGCACAAATATATCGA
Found at i:77781260 original size:13 final size:13
Alignment explanation
Indices: 77781242--77781270 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
77781232 AAAATAATTT
77781242 TATTAAACTCACA
1 TATTAAACTCACA
77781255 TATTAAACTCACA
1 TATTAAACTCACA
77781268 TAT
1 TAT
77781271 AACCATTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.45, C:0.21, G:0.00, T:0.34
Consensus pattern (13 bp):
TATTAAACTCACA
Found at i:77783886 original size:22 final size:22
Alignment explanation
Indices: 77783858--77783915 Score: 89
Period size: 22 Copynumber: 2.6 Consensus size: 22
77783848 CACAAAGTCA
*
77783858 ACAGGACGGCTCAACGCCGTAG
1 ACAGGACGGCTCAACACCGTAG
*
77783880 ACAGGACGGCTTAACACCGTAG
1 ACAGGACGGCTCAACACCGTAG
*
77783902 ACAGGACGACTCAA
1 ACAGGACGGCTCAA
77783916 TGTCATAGAT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 32 1.00
ACGTcount: A:0.33, C:0.29, G:0.28, T:0.10
Consensus pattern (22 bp):
ACAGGACGGCTCAACACCGTAG
Found at i:77787389 original size:27 final size:27
Alignment explanation
Indices: 77787359--77787415 Score: 98
Period size: 27 Copynumber: 2.1 Consensus size: 27
77787349 AAATAATCAA
77787359 AATACCCC-CATAGGGTAAAATGACTGT
1 AATACCCCTC-TAGGGTAAAATGACTGT
77787386 AATACCCCTCTAGGGTAAAATGACTGT
1 AATACCCCTCTAGGGTAAAATGACTGT
77787413 AAT
1 AAT
77787416 TGTAACGCCC
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
27 28 0.97
28 1 0.03
ACGTcount: A:0.37, C:0.21, G:0.18, T:0.25
Consensus pattern (27 bp):
AATACCCCTCTAGGGTAAAATGACTGT
Done.