Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 236 of 349
Found at i:77787683 original size:24 final size:24
Alignment explanation
Indices: 77787650--77787711 Score: 90
Period size: 24 Copynumber: 2.6 Consensus size: 24
77787640 GGAGTGGCTA
*
77787650 GTGGCGTCACATGTGGGG-CCAGAT
1 GTGGCGTCACATGTGGGGCCCA-AG
*
77787674 GTGGCATCACATGTGGGGCCCAAG
1 GTGGCGTCACATGTGGGGCCCAAG
77787698 GTGGCGTCACATGT
1 GTGGCGTCACATGT
77787712 ATGACAAGGA
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
24 31 0.91
25 3 0.09
ACGTcount: A:0.18, C:0.23, G:0.39, T:0.21
Consensus pattern (24 bp):
GTGGCGTCACATGTGGGGCCCAAG
Found at i:77790424 original size:102 final size:103
Alignment explanation
Indices: 77790244--77790428 Score: 309
Period size: 102 Copynumber: 1.8 Consensus size: 103
77790234 AGGTAAAATG
* *
77790244 ACTGTTTTGCCCTTATGTGTTAAAATGATGATTTTTCCCTTATGTGTTAAAATGACGATTTTGCC
1 ACTGTTTTGCCCTTATGTGTTAAAATGACGATTTTTCCCTTATGTGGTAAAATGACGATTTTGCC
*
77790309 CTTATGTGATAAAATGACAGATTTTCCATTATATGGAA
66 CTTATGAGATAAAATGACAGATTTTCCATTATATGGAA
* *
77790347 ACTGTTTTGCCCTTATGTGTTAAAATGACGA-TTTTGCCTTATGTGGTAAAATTACGATTTTGCC
1 ACTGTTTTGCCCTTATGTGTTAAAATGACGATTTTTCCCTTATGTGGTAAAATGACGATTTTGCC
*
77790411 CTTATGAGGTAAAATGAC
66 CTTATGAGATAAAATGAC
77790429 TATTTTGCCC
Statistics
Matches: 76, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
102 46 0.61
103 30 0.39
ACGTcount: A:0.28, C:0.14, G:0.18, T:0.41
Consensus pattern (103 bp):
ACTGTTTTGCCCTTATGTGTTAAAATGACGATTTTTCCCTTATGTGGTAAAATGACGATTTTGCC
CTTATGAGATAAAATGACAGATTTTCCATTATATGGAA
Found at i:77790448 original size:27 final size:27
Alignment explanation
Indices: 77790235--77790448 Score: 246
Period size: 27 Copynumber: 8.1 Consensus size: 27
77790225 ACCACTGTAA
77790235 GGTAAAATGACTG-TTTTGCCCTTATGT
1 GGTAAAATGAC-GATTTTGCCCTTATGT
* * *
77790262 GTTAAAATGATGATTTTTCCCTTATGT
1 GGTAAAATGACGATTTTGCCCTTATGT
*
77790289 GTTAAAATGACGATTTTGCCCTTATGT
1 GGTAAAATGACGATTTTGCCCTTATGT
* * *
77790316 GATAAAATGACAGATTTT-CCATTATAT
1 GGTAAAATGAC-GATTTTGCCCTTATGT
*
77790343 GG-AAACT---G-TTTTGCCCTTATGT
1 GGTAAAATGACGATTTTGCCCTTATGT
*
77790365 GTTAAAATGACGATTTTG-CCTTATGT
1 GGTAAAATGACGATTTTGCCCTTATGT
* *
77790391 GGTAAAATTACGATTTTGCCCTTATGA
1 GGTAAAATGACGATTTTGCCCTTATGT
*
77790418 GGTAAAATGACTATTTTGCCCTTATGT
1 GGTAAAATGACGATTTTGCCCTTATGT
77790445 GGTA
1 GGTA
77790449 GGATGATTGT
Statistics
Matches: 158, Mismatches: 20, Indels: 18
0.81 0.10 0.09
Matches are distributed among these distances:
21 4 0.03
22 9 0.06
23 4 0.03
26 30 0.19
27 105 0.66
28 6 0.04
ACGTcount: A:0.27, C:0.14, G:0.19, T:0.41
Consensus pattern (27 bp):
GGTAAAATGACGATTTTGCCCTTATGT
Found at i:77792761 original size:27 final size:27
Alignment explanation
Indices: 77792681--77792803 Score: 142
Period size: 27 Copynumber: 4.6 Consensus size: 27
77792671 GGTCATCATT
* *
77792681 TGACTGTAATACCCCTATAGGGT-AAA
1 TGACCGTAATACCCCTGTAGGGTAAAA
** *
77792707 TGAGAGTAAT-CTCCTGTAGGGTAAAA
1 TGACCGTAATACCCCTGTAGGGTAAAA
* * * *
77792733 TGACTGTAATGCCCTTGTGGGGTAAAA
1 TGACCGTAATACCCCTGTAGGGTAAAA
77792760 TGACCGTAATACCCCTGTAGGGTAAAA
1 TGACCGTAATACCCCTGTAGGGTAAAA
*
77792787 TGACCGCAATACCCCTG
1 TGACCGTAATACCCCTG
77792804 AAGTAATTCC
Statistics
Matches: 81, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
25 10 0.12
26 19 0.23
27 52 0.64
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.25
Consensus pattern (27 bp):
TGACCGTAATACCCCTGTAGGGTAAAA
Found at i:77792810 original size:41 final size:41
Alignment explanation
Indices: 77792765--77792844 Score: 115
Period size: 41 Copynumber: 2.0 Consensus size: 41
77792755 TAAAATGACC
* *
77792765 GTAATACCCCTGTAGGGTAAAATGACCGCAATACCCCTGAA
1 GTAATACCCCTGTAGGGTAAAATAACCGCAATAACCCTGAA
* * *
77792806 GTAATTCCCTTGTAGGGTAAAATAACCGTAATAACCCTG
1 GTAATACCCCTGTAGGGTAAAATAACCGCAATAACCCTG
77792845 TATGGTAAAA
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
41 34 1.00
ACGTcount: A:0.34, C:0.24, G:0.19, T:0.24
Consensus pattern (41 bp):
GTAATACCCCTGTAGGGTAAAATAACCGCAATAACCCTGAA
Found at i:77793111 original size:26 final size:26
Alignment explanation
Indices: 77793073--77793123 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
77793063 TTTGTCACAT
* * *
77793073 TTATTGTTTCTGGTAGCTATGCTGCA
1 TTATTATTACTGGCAGCTATGCTGCA
*
77793099 TTATTATTACTGGCAGCTTTGCTGC
1 TTATTATTACTGGCAGCTATGCTGC
77793124 GATATAAGTG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.16, C:0.18, G:0.22, T:0.45
Consensus pattern (26 bp):
TTATTATTACTGGCAGCTATGCTGCA
Found at i:77796983 original size:28 final size:27
Alignment explanation
Indices: 77796926--77797077 Score: 241
Period size: 27 Copynumber: 5.6 Consensus size: 27
77796916 TAAATTGTGC
*
77796926 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
77796953 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
77796981 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
77797008 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
* *
77797036 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
77797063 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
77797078 GACTTAATAT
Statistics
Matches: 119, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
27 66 0.55
28 53 0.45
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGACTATGT
Found at i:77796990 original size:55 final size:55
Alignment explanation
Indices: 77796926--77797077 Score: 259
Period size: 55 Copynumber: 2.8 Consensus size: 55
77796916 TAAATTGTGC
*
77796926 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
*
77796981 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
* * *
77797036 AGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCG
77797078 GACTTAATAT
Statistics
Matches: 92, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
55 92 1.00
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
Found at i:77801024 original size:46 final size:45
Alignment explanation
Indices: 77800957--77801130 Score: 208
Period size: 46 Copynumber: 3.8 Consensus size: 45
77800947 TATTTGGGCA
77800957 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * *
77801003 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
*
77801050 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
77801096 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTAT
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAT
77801131 AGGCGGGTTA
Statistics
Matches: 109, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 67 0.61
47 32 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:77801112 original size:93 final size:93
Alignment explanation
Indices: 77800953--77801124 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
77800943 AGGATATTTG
* *
77800953 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
77801018 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* *
77801046 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
77801111 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
77801125 ACTTATAGGC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:77803905 original size:15 final size:15
Alignment explanation
Indices: 77803885--77803953 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
77803875 ATATCTTGGG
77803885 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
77803900 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* * *
77803915 TATCTTTATTCTGGG
1 TTTCTTTATCCTGGA
*
77803930 TTTCTTTATCTTGGA
1 TTTCTTTATCCTGGA
77803945 TTTCTTTAT
1 TTTCTTTAT
77803954 TCAGCTTTCT
Statistics
Matches: 46, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
15 46 1.00
ACGTcount: A:0.13, C:0.16, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:77803954 original size:30 final size:30
Alignment explanation
Indices: 77803876--77803955 Score: 99
Period size: 30 Copynumber: 2.7 Consensus size: 30
77803866 CATAATATCA
* *
77803876 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATCTCTT
* * *
77803906 TAT-TCTGGATATCTTTATTCTGGGTTTCTT
1 TATCT-TGGATTTCTTTATTCTGGATCTCTT
77803936 TATCTTGGATTTCTTTATTC
1 TATCTTGGATTTCTTTATTC
77803956 AGCTTTCTTA
Statistics
Matches: 42, Mismatches: 6, Indels: 4
0.81 0.12 0.08
Matches are distributed among these distances:
29 1 0.02
30 40 0.95
31 1 0.02
ACGTcount: A:0.12, C:0.16, G:0.15, T:0.56
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATCTCTT
Found at i:77808227 original size:26 final size:27
Alignment explanation
Indices: 77808191--77808250 Score: 95
Period size: 26 Copynumber: 2.3 Consensus size: 27
77808181 GGTCATTATT
*
77808191 TGACCGTAATACCACTGTAGGGT-AAA
1 TGACCGTAATACCACTGTAGAGTAAAA
*
77808217 TGACCGTAATACCCCTGTAGAGTAAAA
1 TGACCGTAATACCACTGTAGAGTAAAA
77808244 TGACCGT
1 TGACCGT
77808251 TGTAATAGCC
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
26 21 0.68
27 10 0.32
ACGTcount: A:0.33, C:0.22, G:0.22, T:0.23
Consensus pattern (27 bp):
TGACCGTAATACCACTGTAGAGTAAAA
Found at i:77809585 original size:46 final size:44
Alignment explanation
Indices: 77809393--77809603 Score: 181
Period size: 46 Copynumber: 4.5 Consensus size: 44
77809383 AGTGTGAGGT
** * *
77809393 AGTGTAAGACATGTCTGGGACATGCATCAGCCATATTATAAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAG-C-TAAGATGATAGCC
* * * *
77809439 AGTGTATGACCATGTCTGGGACATAGCATCAACATTAAGATGATATCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCAGC--TAAGATGATAGCC
* * * *
77809487 AGTGTAAGACATGTTTGGGACATGCATCGGCCTCAAGACG-TAAACC
1 AGTGTAAGACATGTCTGGGACATGCATCAG-CT-AAGATGAT-AGCC
*
77809533 AGTGTAAGACATGTCTGGGACATGCATCAGCTACGAGATGATAGTC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCTA--AGATGATAGCC
*
77809579 AATGTAAGACAATGTCTGGGACATG
1 AGTGTAAGAC-ATGTCTGGGACATG
77809604 GCTTCGGCAC
Statistics
Matches: 133, Mismatches: 22, Indels: 19
0.76 0.13 0.11
Matches are distributed among these distances:
44 1 0.01
45 4 0.03
46 63 0.47
47 44 0.33
48 21 0.16
ACGTcount: A:0.32, C:0.18, G:0.25, T:0.25
Consensus pattern (44 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCTAAGATGATAGCC
Found at i:77812732 original size:55 final size:55
Alignment explanation
Indices: 77812667--77812777 Score: 204
Period size: 55 Copynumber: 2.0 Consensus size: 55
77812657 TAGCTATTGG
* *
77812667 AATGGCTAATCAAGGACATGTTTGGTGTTATGTATGGCTAAATGCTAGTTATTCC
1 AATGGCTAATCAAGGACATGTTTGGTATTATGTATGCCTAAATGCTAGTTATTCC
77812722 AATGGCTAATCAAGGACATGTTTGGTATTATGTATGCCTAAATGCTAGTTATTCC
1 AATGGCTAATCAAGGACATGTTTGGTATTATGTATGCCTAAATGCTAGTTATTCC
77812777 A
1 A
77812778 TGGAAATCAT
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
55 54 1.00
ACGTcount: A:0.29, C:0.14, G:0.22, T:0.36
Consensus pattern (55 bp):
AATGGCTAATCAAGGACATGTTTGGTATTATGTATGCCTAAATGCTAGTTATTCC
Found at i:77817374 original size:29 final size:29
Alignment explanation
Indices: 77817285--77817392 Score: 114
Period size: 28 Copynumber: 3.8 Consensus size: 29
77817275 TATCTAGCCC
* *
77817285 ATTAAGCCC-AATCATATTCATATGGCCA
1 ATTAGGCCCAAATCACATTCATATGGCCA
* *
77817313 ATTAGGCCCAAATCAC-TTGATATGGCCC
1 ATTAGGCCCAAATCACATTCATATGGCCA
* *
77817341 ATTAGGCCCAAATCACATTTATATGGCCT
1 ATTAGGCCCAAATCACATTCATATGGCCA
* * *
77817370 GTTAGGCCC-AGTCTCATTCATAT
1 ATTAGGCCCAAATCACATTCATAT
77817393 TCATGCTCAC
Statistics
Matches: 68, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
28 45 0.66
29 23 0.34
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.30
Consensus pattern (29 bp):
ATTAGGCCCAAATCACATTCATATGGCCA
Found at i:77820885 original size:39 final size:40
Alignment explanation
Indices: 77820840--77821063 Score: 242
Period size: 40 Copynumber: 5.7 Consensus size: 40
77820830 GCTCCTCGTT
* * * *
77820840 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
77820880 C-AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
77820919 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
77820959 CAAAGGCCTTCGGG-CTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCA
** * * * *
77820998 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
77821039 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
77821064 CAGCATTCAA
Statistics
Matches: 159, Mismatches: 18, Indels: 14
0.83 0.09 0.07
Matches are distributed among these distances:
38 2 0.01
39 67 0.42
40 79 0.50
41 11 0.07
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:77820943 original size:79 final size:78
Alignment explanation
Indices: 77820840--77821063 Score: 254
Period size: 79 Copynumber: 2.8 Consensus size: 78
77820830 GCTCCTCGTT
* * *
77820840 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACTTAACCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAAGCCTTCGGGACTTAACCCGGA
77820905 TTTAATAACTCGCA
66 TTT-ATAACTCGCA
* * * *
77820919 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGG-CTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAA-GCCTTCGGGACTTAACCCGG
* *
77820983 AATTTGTATCTCGCA
65 -ATTTATAACTCGCA
* * * * * *
77820998 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCA-CACAAAGCCTTCGGGACTTAACCCG
77821062 GA
64 GA
77821064 CAGCATTCAA
Statistics
Matches: 121, Mismatches: 19, Indels: 10
0.81 0.13 0.07
Matches are distributed among these distances:
78 3 0.02
79 90 0.74
80 28 0.23
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (78 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAAGCCTTCGGGACTTAACCCGGA
TTTATAACTCGCA
Found at i:77821072 original size:41 final size:41
Alignment explanation
Indices: 77820995--77821072 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
77820985 TTTGTATCTC
* * *
77820995 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
77821036 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
77821073 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:77828862 original size:40 final size:40
Alignment explanation
Indices: 77828764--77829026 Score: 316
Period size: 40 Copynumber: 6.6 Consensus size: 40
77828754 TCCTCGTTCA
* * * * *
77828764 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
77828803 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
77828843 ACTGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
77828883 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
77828923 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
77828963 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
77829003 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
77829027 CAGCATTCAA
Statistics
Matches: 198, Mismatches: 22, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
39 37 0.19
40 153 0.77
41 8 0.04
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:77835829 original size:31 final size:31
Alignment explanation
Indices: 77835791--77835850 Score: 84
Period size: 31 Copynumber: 1.9 Consensus size: 31
77835781 TTCATATTTC
**
77835791 ATATTTCATAACACTGGGCTGAAGCCTTTTG
1 ATATTTCATAACACTGGGCCAAAGCCTTTTG
**
77835822 ATATTTCATATTACTGGGCCAAAGCCTTT
1 ATATTTCATAACACTGGGCCAAAGCCTTT
77835851 ACTGTAAACG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.27, C:0.20, G:0.17, T:0.37
Consensus pattern (31 bp):
ATATTTCATAACACTGGGCCAAAGCCTTTTG
Found at i:77836128 original size:26 final size:26
Alignment explanation
Indices: 77836070--77836165 Score: 153
Period size: 25 Copynumber: 3.8 Consensus size: 26
77836060 CTCTTTTAAT
* *
77836070 AACTGGGG-TAAAGCCCTTTT-GATA
1 AACTGGGGCAAAAGCCCTTTTCGGTA
77836094 AACTGGGGCAAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAAGCCCTTTTCGGTA
77836120 AACTGGGGCAAAAG-CCTTTTCGGTA
1 AACTGGGGCAAAAGCCCTTTTCGGTA
77836145 AACTGGGGCAAAAGCCCTTTT
1 AACTGGGGCAAAAGCCCTTTT
77836166 TGCACTTCCT
Statistics
Matches: 67, Mismatches: 2, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
24 8 0.12
25 36 0.54
26 23 0.34
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
AACTGGGGCAAAAGCCCTTTTCGGTA
Found at i:77836150 original size:51 final size:50
Alignment explanation
Indices: 77836070--77836165 Score: 149
Period size: 51 Copynumber: 1.9 Consensus size: 50
77836060 CTCTTTTAAT
*
77836070 AACTGGGGTAAAGCCCTTTTGATAAACTGGGGCAAAAGCCCTTTTCGGTA
1 AACTGGGGAAAAGCCCTTTTGATAAACTGGGGCAAAAGCCCTTTTCGGTA
*
77836120 AACTGGGGCAAAAG-CCTTTTCGGTAAACTGGGGCAAAAGCCCTTTT
1 AACTGGGG-AAAAGCCCTTTT-GATAAACTGGGGCAAAAGCCCTTTT
77836166 TGCACTTCCT
Statistics
Matches: 42, Mismatches: 2, Indels: 3
0.89 0.04 0.06
Matches are distributed among these distances:
50 14 0.33
51 28 0.67
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (50 bp):
AACTGGGGAAAAGCCCTTTTGATAAACTGGGGCAAAAGCCCTTTTCGGTA
Found at i:77836236 original size:20 final size:20
Alignment explanation
Indices: 77836213--77836259 Score: 94
Period size: 20 Copynumber: 2.4 Consensus size: 20
77836203 TTATGAATAC
77836213 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
77836233 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
77836253 ATCATGT
1 ATCATGT
77836260 ATATCAGAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.34, C:0.19, G:0.11, T:0.36
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:77841848 original size:46 final size:46
Alignment explanation
Indices: 77841796--77841971 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
77841786 TATTTGGGCA
77841796 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
77841842 TCCGAGCTCGTTGAGTTGAGTCCTAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
77841887 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
77841935 CCCGAGCTCGTTGAGTTGAGTCCAAGTTCACTTATGG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
77841972 GTGGGTTACA
Statistics
Matches: 110, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 28 0.25
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:77841951 original size:93 final size:93
Alignment explanation
Indices: 77841792--77841963 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
77841782 AGGATATTTG
* *
77841792 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAGCTCGTTGAG
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
*
77841857 TTGAGTCCTAGTTCGTGAGATGTAACTA
66 TTGAGTCCAAGTTCGTGAGATGTAACTA
77841885 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
77841950 TTGAGTCCAAGTTC
66 TTGAGTCCAAGTTC
77841964 ACTTATGGGT
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
TTGAGTCCAAGTTCGTGAGATGTAACTA
Found at i:77847474 original size:24 final size:24
Alignment explanation
Indices: 77847442--77847591 Score: 106
Period size: 24 Copynumber: 6.1 Consensus size: 24
77847432 TCGATTTCAT
77847442 ACACATAGTGCTATTCAAATCCGC
1 ACACATAGTGCTATTCAAATCCGC
* * * * * *
77847466 ACACTTAGTACCATGCTAACCCGC
1 ACACATAGTGCTATTCAAATCCGC
** *
77847490 ACACATAGTGCCT-TAGAAATCCAC
1 ACACATAGTG-CTATTCAAATCCGC
* * *
77847514 ACACTCGTATTGAC-ATTCAAATCAGC
1 ACA--CATAGTG-CTATTCAAATCCGC
*
77847540 ACACATAGTGCTATTCAATTCCGC
1 ACACATAGTGCTATTCAAATCCGC
* *
77847564 ACACATAGTGCCATTCAAAATCCTC
1 ACACATAGTGCTATTC-AAATCCGC
77847589 ACA
1 ACA
77847592 TTTAGTGCCA
Statistics
Matches: 92, Mismatches: 28, Indels: 11
0.70 0.21 0.08
Matches are distributed among these distances:
23 1 0.01
24 65 0.71
25 10 0.11
26 16 0.17
ACGTcount: A:0.34, C:0.31, G:0.11, T:0.24
Consensus pattern (24 bp):
ACACATAGTGCTATTCAAATCCGC
Found at i:77856985 original size:13 final size:13
Alignment explanation
Indices: 77856967--77856991 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
77856957 AGTAAAGAAA
77856967 ATATGTGTATATG
1 ATATGTGTATATG
77856980 ATATGTGTATAT
1 ATATGTGTATAT
77856992 ATGATGAGGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.00, G:0.20, T:0.48
Consensus pattern (13 bp):
ATATGTGTATATG
Found at i:77866753 original size:70 final size:71
Alignment explanation
Indices: 77866634--77866778 Score: 256
Period size: 70 Copynumber: 2.1 Consensus size: 71
77866624 AGCCACCATG
77866634 TGTAAGAGGTTTGAGGACGGCCTCAATAAAGATATCCGAGTGTTTGTTGGCATCATAGAGCTGTG
1 TGTAAGAGGTTTGAGGACGGCCTCAATAAAGATATCCGAGTGTTTGTTGGCATCATAGAGCTGTG
77866699 GGAATT
66 GGAATT
* * *
77866705 TGTAA-AGGTTTGAGGACGGCCTCAGTAAAGATATCCGAGTGTTTGTTGGCATCTTAGAGCTTTG
1 TGTAAGAGGTTTGAGGACGGCCTCAATAAAGATATCCGAGTGTTTGTTGGCATCATAGAGCTGTG
77866769 GGAATT
66 GGAATT
77866775 TGTA
1 TGTA
77866779 GCACTTGTTG
Statistics
Matches: 71, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
70 66 0.93
71 5 0.07
ACGTcount: A:0.26, C:0.12, G:0.30, T:0.32
Consensus pattern (71 bp):
TGTAAGAGGTTTGAGGACGGCCTCAATAAAGATATCCGAGTGTTTGTTGGCATCATAGAGCTGTG
GGAATT
Found at i:77867840 original size:9 final size:9
Alignment explanation
Indices: 77867826--77867857 Score: 64
Period size: 9 Copynumber: 3.6 Consensus size: 9
77867816 AATCGGTTTA
77867826 TTTACTCTG
1 TTTACTCTG
77867835 TTTACTCTG
1 TTTACTCTG
77867844 TTTACTCTG
1 TTTACTCTG
77867853 TTTAC
1 TTTAC
77867858 GAAAAATATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.12, C:0.22, G:0.09, T:0.56
Consensus pattern (9 bp):
TTTACTCTG
Found at i:77871718 original size:16 final size:16
Alignment explanation
Indices: 77871699--77871729 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
77871689 CTTCTTCACT
77871699 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
77871715 TACTTACTTACTTAA
1 TACTCACTTACTTAA
77871730 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:77871735 original size:20 final size:20
Alignment explanation
Indices: 77871696--77871735 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
77871686 AAACTTCTTC
* *
77871696 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
77871716 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
77871736 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:77872119 original size:108 final size:110
Alignment explanation
Indices: 77871968--77872166 Score: 287
Period size: 108 Copynumber: 1.8 Consensus size: 110
77871958 TATCCTTTTC
* * *
77871968 AAACTTACCATTGCCATGTCTCGACATGGTCTTACATGGTATCCTTGCCTTATG-AA-CTCACGA
1 AAACTTACCAATGCCATGTCTCGACATGGTCTTACATGATATCCTTGCCTTA-GAAACCTCACCA
77872031 A-TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAG
65 ATTGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAG
* * * * *
77872076 AAACTTATCAATGCCATGTCTTGACATGGTCTTATATGATATCCTTGCTTTAGAAACCTTACCAA
1 AAACTTACCAATGCCATGTCTCGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAA
*
77872141 TTGCCTTGCCTTGGCATGGTCTTACA
66 TTGCCATGCCTTGGCATGGTCTTACA
77872167 AGGTATACTT
Statistics
Matches: 79, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
107 1 0.01
108 48 0.61
109 6 0.08
110 24 0.30
ACGTcount: A:0.24, C:0.25, G:0.18, T:0.34
Consensus pattern (110 bp):
AAACTTACCAATGCCATGTCTCGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAA
TTGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAG
Found at i:77872159 original size:55 final size:53
Alignment explanation
Indices: 77871922--77872172 Score: 226
Period size: 55 Copynumber: 4.7 Consensus size: 53
77871912 ACACGGGTAC
* * * * *
77871922 CTTACCATTGCCATGACTTGTCATGGTCTTACGTGGTATCC-T--TTT-CAAA
1 CTTACCAATGCCATGCCTTGGCATGGTCTTACATGGTATCCTTGCTTTAGAAA
* * * * *
77871971 CTTACCATTGCCATGTCTCGACATGGTCTTACATGGTATCCTTGCCTTATG-AA
1 CTTACCAATGCCATGCCTTGGCATGGTCTTACATGGTATCCTTGCTTTA-GAAA
* * *
77872024 CTCACGAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGAAA
1 CTTACCAATGCCATGCCTTGGCATGGTCTTACATGGTATCC-TTG-CTT-TAGAAA
* * * * *
77872079 CTTATCAATGCCATGTCTTGACATGGTCTTATATGATATCCTTGCTTTAGAAA
1 CTTACCAATGCCATGCCTTGGCATGGTCTTACATGGTATCCTTGCTTTAGAAA
* *
77872132 CCTTACCAATTGCCTTGCCTTGGCATGGTCTTACAAGGTAT
1 -CTTACCAA-TGCCATGCCTTGGCATGGTCTTACATGGTAT
77872173 ACTTAAACCC
Statistics
Matches: 161, Mismatches: 29, Indels: 18
0.77 0.14 0.09
Matches are distributed among these distances:
49 37 0.23
50 1 0.01
52 4 0.02
53 42 0.26
54 13 0.08
55 62 0.39
56 2 0.01
ACGTcount: A:0.22, C:0.24, G:0.18, T:0.35
Consensus pattern (53 bp):
CTTACCAATGCCATGCCTTGGCATGGTCTTACATGGTATCCTTGCTTTAGAAA
Found at i:77875485 original size:8 final size:9
Alignment explanation
Indices: 77875459--77875494 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
77875449 GGGGTTGTTT
77875459 ATTAAACTA
1 ATTAAACTA
77875468 ATTAAACTA
1 ATTAAACTA
77875477 ATT-AACTA
1 ATTAAACTA
*
77875485 AGTAAACTA
1 ATTAAACTA
77875494 A
1 A
77875495 AGTAAAGAGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
8 7 0.28
9 18 0.72
ACGTcount: A:0.56, C:0.11, G:0.03, T:0.31
Consensus pattern (9 bp):
ATTAAACTA
Found at i:77878464 original size:18 final size:18
Alignment explanation
Indices: 77878412--77878465 Score: 54
Period size: 18 Copynumber: 3.0 Consensus size: 18
77878402 AAGAAAATAA
* *
77878412 TAAAATTGAAATGAAAAT
1 TAAAATTAAAATAAAAAT
* * *
77878430 GAAAATAAAAAGAAAAAT
1 TAAAATTAAAATAAAAAT
*
77878448 TAAAATTAAAATTAAAAT
1 TAAAATTAAAATAAAAAT
77878466 AACAATATAA
Statistics
Matches: 27, Mismatches: 9, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.69, C:0.00, G:0.07, T:0.24
Consensus pattern (18 bp):
TAAAATTAAAATAAAAAT
Found at i:77882402 original size:9 final size:9
Alignment explanation
Indices: 77882388--77882423 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
77882378 GAGGTTGTTT
77882388 ATTAAACTA
1 ATTAAACTA
77882397 ATTAAACTA
1 ATTAAACTA
77882406 ATT-AACTA
1 ATTAAACTA
77882414 ATTAAACTA
1 ATTAAACTA
77882423 A
1 A
77882424 AGTAAAGAGA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
8 8 0.31
9 18 0.69
ACGTcount: A:0.56, C:0.11, G:0.00, T:0.33
Consensus pattern (9 bp):
ATTAAACTA
Found at i:77887784 original size:16 final size:16
Alignment explanation
Indices: 77887765--77887795 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
77887755 CTTCTTCACG
77887765 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
77887781 TACTTACTTACTTAA
1 TACTCACTTACTTAA
77887796 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:77888185 original size:108 final size:109
Alignment explanation
Indices: 77888033--77888232 Score: 305
Period size: 108 Copynumber: 1.8 Consensus size: 109
77888023 GTATCCTTTT
* *
77888033 GAAACTTACCATTGCCATGTCTCGACATGGTCTTACATGGTATCCTTGCCTTATGAA-CTCACCA
1 GAAACTTACCAATGCCATGTCTCGACATGGTCTTACATGATATCCTTGCCTTA-GAACCTCACCA
77888097 A-TGCCATGCCTTGGCATGGTCTTACATGAGACCTTTGCCTTATA
65 ATTGCCATGCCTTGGCATGGTCTTACATGAGACCTTTGCCTTATA
* * * * *
77888141 GAAACTTATCAATGCCATGTCTTGACATGGTCTTATATGATATCCTTGCTTTAGAAGCCTTACCA
1 GAAACTTACCAATGCCATGTCTCGACATGGTCTTACATGATATCCTTGCCTTAGAA-CCTCACCA
77888206 ATTGCCATGCCTTGGCATGGTCTTACA
65 ATTGCCATGCCTTGGCATGGTCTTACA
77888233 AGGTATCCTT
Statistics
Matches: 82, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
107 3 0.04
108 47 0.57
109 7 0.09
110 25 0.30
ACGTcount: A:0.24, C:0.25, G:0.17, T:0.34
Consensus pattern (109 bp):
GAAACTTACCAATGCCATGTCTCGACATGGTCTTACATGATATCCTTGCCTTAGAACCTCACCAA
TTGCCATGCCTTGGCATGGTCTTACATGAGACCTTTGCCTTATA
Found at i:77888212 original size:55 final size:54
Alignment explanation
Indices: 77887988--77888242 Score: 233
Period size: 55 Copynumber: 4.8 Consensus size: 54
77887978 ACACGGGTAC
* * * *
77887988 CTTACC-ATTGCCATGACTTGTCATGGTCTTACGTGGTATCC-T--TTT-GAAA
1 CTTACCAATTGCCATGCCTTGACATGGTCTTACATGATATCCTTGCTTTAGAAA
* * * *
77888037 CTTACC-ATTGCCATGTCTCGACATGGTCTTACATGGTATCCTTGCCTTATG-AA
1 CTTACCAATTGCCATGCCTTGACATGGTCTTACATGATATCCTTGCTTTA-GAAA
* * *
77888090 CTCACCAA-TGCCATGCCTTGGCATGGTCTTACATGAGA-CCTTTGCCTTATAGAAA
1 CTTACCAATTGCCATGCCTTGACATGGTCTTACATGATATCC-TTG-CTT-TAGAAA
* * * *
77888145 CTTATCAA-TGCCATGTCTTGACATGGTCTTATATGATATCCTTGCTTTAGAAGC
1 CTTACCAATTGCCATGCCTTGACATGGTCTTACATGATATCCTTGCTTTAGAA-A
* * *
77888199 CTTACCAATTGCCATGCCTTGGCATGGTCTTACAAGGTATCCTT
1 CTTACCAATTGCCATGCCTTGACATGGTCTTACATGATATCCTT
77888243 AAACCTTAAT
Statistics
Matches: 168, Mismatches: 25, Indels: 20
0.79 0.12 0.09
Matches are distributed among these distances:
49 37 0.22
50 1 0.01
52 4 0.02
53 40 0.24
54 15 0.09
55 69 0.41
56 2 0.01
ACGTcount: A:0.22, C:0.25, G:0.18, T:0.35
Consensus pattern (54 bp):
CTTACCAATTGCCATGCCTTGACATGGTCTTACATGATATCCTTGCTTTAGAAA
Found at i:77889534 original size:46 final size:47
Alignment explanation
Indices: 77889467--77889636 Score: 199
Period size: 47 Copynumber: 3.7 Consensus size: 47
77889457 CAGGAGAGCT
*
77889467 AGTGTAAGA-CATGTCTAGGACAT-GCATCGACCTCGAAATGTAAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGA-CTCGAAATGTAAGCC
* *
77889513 AGTGTAAGA-CATGTCTGGGACAT-GCATCAACTAC-AAGATG-ATAGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACT-CGAA-ATGTA-AGCC
* * * *
77889559 AGTGTAAGACCATGTCTGGGACATGGCATCGACTTGAGATATGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACTCGAAATGTAAGCC
77889606 AGTGTAAGACCATGTCTGGGACATGGCATCG
1 AGTGTAAGACCATGTCTGGGACATGGCATCG
77889637 GCACCTTACC
Statistics
Matches: 108, Mismatches: 9, Indels: 13
0.83 0.07 0.10
Matches are distributed among these distances:
45 5 0.05
46 44 0.41
47 50 0.46
48 9 0.08
ACGTcount: A:0.31, C:0.19, G:0.27, T:0.23
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGACTCGAAATGTAAGCC
Found at i:77891999 original size:14 final size:14
Alignment explanation
Indices: 77891980--77892006 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
77891970 CAAAATCGAT
77891980 AAAATTTTCTTATC
1 AAAATTTTCTTATC
77891994 AAAATTTTCTTAT
1 AAAATTTTCTTAT
77892007 AACGTTCCTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.11, G:0.00, T:0.52
Consensus pattern (14 bp):
AAAATTTTCTTATC
Found at i:77894569 original size:27 final size:27
Alignment explanation
Indices: 77894539--77894716 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
77894529 ATATTAAGTC
* * *
77894539 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
* *
77894566 CGCACACTTAGTGCCACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
77894594 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
** * *
77894621 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
* **
77894648 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAACT
* *
77894675 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAACT
77894702 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
77894717 GTACAATTTA
Statistics
Matches: 131, Mismatches: 17, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
27 105 0.80
28 26 0.20
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAACT
Found at i:77894623 original size:55 final size:54
Alignment explanation
Indices: 77894539--77894716 Score: 232
Period size: 54 Copynumber: 3.3 Consensus size: 54
77894529 ATATTAAGTC
* * *
77894539 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCCACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCCACATAGTCAAA-T
* * * *
77894594 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCCACATAGTCAAAT
* ** *
77894648 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTA-CATAATCAACTCGCACACTTAGTGCCACATAGTCAAAT
77894702 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
77894717 GTACAATTTA
Statistics
Matches: 107, Mismatches: 14, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
53 1 0.01
54 60 0.56
55 46 0.43
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.26
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCCACATAGTCAAAT
Found at i:77894705 original size:81 final size:82
Alignment explanation
Indices: 77894560--77894715 Score: 235
Period size: 81 Copynumber: 1.9 Consensus size: 82
77894550 TGCTATATAA
* *
77894560 TCAACTCGCACACTTAGTGCCACATAATCAAACTCGCACACTTAGTGCTACATAGTCAACTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAACTCGCACACTTAGTGCAACATAGTCAAATCGCA
77894625 CACTTAGTGCCGCATGG
66 CACTTAGTGCCGCATGG
* * **
77894642 TCAATTCGCACACTTAGTG-CATCATATTC-ATTTCGCACACTTAGTGCAACATAGTCAAATCGC
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAACTCGCACACTTAGTGCAACATAGTCAAATCGC
77894705 ACACTTAGTGC
65 ACACTTAGTGC
77894716 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 43 0.64
82 24 0.36
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.26
Consensus pattern (82 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAACTCGCACACTTAGTGCAACATAGTCAAATCGCA
CACTTAGTGCCGCATGG
Found at i:77902879 original size:77 final size:76
Alignment explanation
Indices: 77902782--77902997 Score: 213
Period size: 77 Copynumber: 2.8 Consensus size: 76
77902772 CTCGTTCAAG
* ** * *
77902782 TGCCTTCGGGACATAGCCCGGTTATAGTAACTCATTCAATGCCTTCGGGACTTAACCCGGATTTT
1 TGCCTTCGGGACTTAGCCCGG-TATAGTAACTCACACAAAGCCTTCGGGACTTAACCCGGA-ATT
*
77902847 AA-ATCGCACGAA
64 AATATCGCACAAA
* * * *
77902859 TGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACAAAGGCCTTCGGG-CTTAACCCGGAATT
1 TGCCTTCGGGACTTAGCCCGGTA-TAGTAACTCACACAAA-GCCTTCGGGACTTAACCCGGAATT
77902923 AATATCGCACAAA
64 AATATCGCACAAA
* * * * *
77902936 TACCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 TGCCTTCGGGA-CTTAGCCCGG-TATAGTAACTCA-CACAAAGCCTTCGGGACTTAACCCGGA
77902998 CAAATTCAAT
Statistics
Matches: 113, Mismatches: 19, Indels: 13
0.78 0.13 0.09
Matches are distributed among these distances:
76 8 0.07
77 79 0.70
78 26 0.23
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (76 bp):
TGCCTTCGGGACTTAGCCCGGTATAGTAACTCACACAAAGCCTTCGGGACTTAACCCGGAATTAA
TATCGCACAAA
Found at i:77902923 original size:39 final size:39
Alignment explanation
Indices: 77902819--77902944 Score: 168
Period size: 38 Copynumber: 3.3 Consensus size: 39
77902809 TAACTCATTC
* * *
77902819 AATGCCTTCGGGACTTAACCCGG-ATTTTAAATCGCACG
1 AATGCCTTCGGGACTTAACCCGGAATTATATATCGCACA
*
77902857 AATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTA-TATATCGCACA
*
77902897 AAGGCCTTCGGG-CTTAACCCGGAATTA-ATATCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTATATATCGCACA
*
77902934 AATACCTTCGG
1 AATGCCTTCGG
77902945 ATCTTAGTCC
Statistics
Matches: 78, Mismatches: 8, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
37 18 0.23
38 23 0.29
39 18 0.23
40 19 0.24
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.25
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGAATTATATATCGCACA
Found at i:77910763 original size:79 final size:78
Alignment explanation
Indices: 77910661--77910883 Score: 265
Period size: 79 Copynumber: 2.8 Consensus size: 78
77910651 GCTCCTCGTT
* *
77910661 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGG-CTTAGCCCGG-TATAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCGG
*
77910726 ATTTAGTAACTCGCA
64 AATTAGTAACTCGCA
*
77910741 CAAATGCCTTCGGGCTTAGCCCGGAATTAGT-ATCTCGCACAAATGCCTTCGGG-CTTAGCCCGG
1 CAAATGCCTTCGGGCTTAGCCCGGTA-TAGTAAT-TCGCACAAATGCCTTCGGGACTTAGCCCGG
*
77910804 AATTAGTATCTCGCA
64 AATTAGTAACTCGCA
* * * * *
77910819 CAAATGCCTTCGGATCTTAGTCCGGATATTGTCACTTAGCAC-AA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGG-GCTTAGCCCGG-TATAGT-AATTCGCACAAATGCCTTCGGGACTTAGCCCG
77910882 GA
63 GA
77910884 CATCATTCAA
Statistics
Matches: 125, Mismatches: 11, Indels: 15
0.83 0.07 0.10
Matches are distributed among these distances:
78 47 0.38
79 57 0.46
80 20 0.16
81 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (78 bp):
CAAATGCCTTCGGGCTTAGCCCGGTATAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCGGAA
TTAGTAACTCGCA
Found at i:77910778 original size:39 final size:40
Alignment explanation
Indices: 77910661--77910883 Score: 266
Period size: 39 Copynumber: 5.7 Consensus size: 40
77910651 GCTCCTCGTT
* *
77910661 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
77910701 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
77910741 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
77910780 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
77910819 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
77910860 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
77910884 CATCATTCAA
Statistics
Matches: 166, Mismatches: 9, Indels: 17
0.86 0.05 0.09
Matches are distributed among these distances:
38 2 0.01
39 89 0.54
40 64 0.39
41 11 0.07
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:77913106 original size:27 final size:27
Alignment explanation
Indices: 77913076--77913176 Score: 114
Period size: 27 Copynumber: 3.7 Consensus size: 27
77913066 ATTCTGTTAA
* *
77913076 GTGGCTTTGCCACATTATCTGTTTCTG
1 GTGGCTATGCCACAATATCTGTTTCTG
*
77913103 GTGGCTACGCCACAAATATCTG-TTCTG
1 GTGGCTATGCCAC-AATATCTGTTTCTG
* *
77913130 GTGGCTCTGCCACAATATCTGTATCTG
1 GTGGCTATGCCACAATATCTGTTTCTG
* * *
77913157 GTGACTCTGTCACAATATCT
1 GTGGCTATGCCACAATATCT
77913177 AATAACTGAG
Statistics
Matches: 64, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
26 8 0.12
27 49 0.77
28 7 0.11
ACGTcount: A:0.19, C:0.25, G:0.21, T:0.36
Consensus pattern (27 bp):
GTGGCTATGCCACAATATCTGTTTCTG
Found at i:77913394 original size:31 final size:31
Alignment explanation
Indices: 77913314--77913387 Score: 94
Period size: 31 Copynumber: 2.4 Consensus size: 31
77913304 TTGTATTCAC
* *
77913314 ATTTTGATTTTTGATTCTGTTACCTGATACTG
1 ATTTTGA-TTCTGATTCTGTCACCTGATACTG
* **
77913346 ATTCTGATTCTGATTCTGTCACCTGATTTTG
1 ATTTTGATTCTGATTCTGTCACCTGATACTG
77913377 ATTTTGATTCT
1 ATTTTGATTCT
77913388 AGTTCTGATA
Statistics
Matches: 36, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
31 30 0.83
32 6 0.17
ACGTcount: A:0.18, C:0.15, G:0.15, T:0.53
Consensus pattern (31 bp):
ATTTTGATTCTGATTCTGTCACCTGATACTG
Found at i:77918497 original size:16 final size:16
Alignment explanation
Indices: 77918478--77918508 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
77918468 CTTCTTCACT
77918478 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
77918494 TACTTACTTACTTAA
1 TACTCACTTACTTAA
77918509 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:77918514 original size:20 final size:20
Alignment explanation
Indices: 77918475--77918514 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
77918465 CAACTTCTTC
* *
77918475 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
77918495 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
77918515 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:77918886 original size:55 final size:53
Alignment explanation
Indices: 77918747--77918954 Score: 240
Period size: 55 Copynumber: 3.8 Consensus size: 53
77918737 ATCCTTTTGA
* * *
77918747 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTACCTTATG
1 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATG
* * *
77918800 AACTCATCAATGCCATGCCTTGACATGGTCTTACATGGGA-CCTTTGCCTTATAG
1 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGGTATCC-TTGCCTTAT-G
77918854 TAACTTATCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTA-G
1 -AACTTATCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATG
* ** * * *
77918907 AAACCTTACCAATTATCATGCCTTGGCATGGTCTTAAATGGTATCCTT
1 -AA-CTTATCAA-TGCCATGTCTTGACATGGTCTTACATGGTATCCTT
77918955 AAACCCTAAT
Statistics
Matches: 133, Mismatches: 16, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
52 2 0.02
53 46 0.35
54 8 0.06
55 75 0.56
56 2 0.02
ACGTcount: A:0.24, C:0.24, G:0.16, T:0.36
Consensus pattern (53 bp):
AACTTATCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATG
Found at i:77923296 original size:45 final size:45
Alignment explanation
Indices: 77923231--77923320 Score: 162
Period size: 45 Copynumber: 2.0 Consensus size: 45
77923221 AATTCTAGTG
77923231 TAAGTGTTTGCCCTCCCAATCAGTTTTTGCTAAGTATCGAATATC
1 TAAGTGTTTGCCCTCCCAATCAGTTTTTGCTAAGTATCGAATATC
* *
77923276 TAAGTGTTTGCCCTCTCAATCAGTTTTTTCTAAGTATCGAATATC
1 TAAGTGTTTGCCCTCCCAATCAGTTTTTGCTAAGTATCGAATATC
77923321 CAGTTTCTCT
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
45 43 1.00
ACGTcount: A:0.24, C:0.21, G:0.14, T:0.40
Consensus pattern (45 bp):
TAAGTGTTTGCCCTCCCAATCAGTTTTTGCTAAGTATCGAATATC
Found at i:77924840 original size:68 final size:67
Alignment explanation
Indices: 77924768--77924944 Score: 184
Period size: 67 Copynumber: 2.6 Consensus size: 67
77924758 CATCATGTGT
* * * *
77924768 ACAAGAGAGCTACGAGATACTATGTGGTAGCTAGGTCACATGTGT-GATAC-GG-GATGTATACA
1 ACAAGAGAGCTACGAGATA--A-AT-GTAGCTAGGTCACATGTGTGGATACAGGTGAAGGACACA
77924830 ATGTAG
62 ATGTAG
* * * * *
77924836 ACAAGAGAGCTACGGGATAAATGTAGCTAGGTCGCATGTGTGGTTCCAGGTGAAGGACACGATGT
1 ACAAGAGAGCTACGAGATAAATGTAGCTAGGTCACATGTGTGGATACAGGTGAAGGACACAATGT
77924901 AG
66 AG
*
77924903 ACAAGAGAGCTACGAGATAAAATG--GCTAGGTCACATGGGTGG
1 ACAAGAGAGCTACGAGAT-AAATGTAGCTAGGTCACATGTGTGG
77924945 TACTTAGTGT
Statistics
Matches: 93, Mismatches: 12, Indels: 10
0.81 0.10 0.09
Matches are distributed among these distances:
64 18 0.19
65 4 0.04
66 19 0.20
67 29 0.31
68 23 0.25
ACGTcount: A:0.32, C:0.14, G:0.32, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGAGATAAATGTAGCTAGGTCACATGTGTGGATACAGGTGAAGGACACAATGT
AG
Found at i:77926678 original size:40 final size:40
Alignment explanation
Indices: 77926580--77926922 Score: 415
Period size: 40 Copynumber: 8.6 Consensus size: 40
77926570 TCCTCGTTCA
* * * * *
77926580 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
77926619 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
77926659 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
77926699 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
77926739 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
77926779 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * *
77926819 AAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGG-ATTTAATAACTCGCACG
** * * * *
77926859 AATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
77926899 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
77926923 CAGCATTCAA
Statistics
Matches: 273, Mismatches: 25, Indels: 11
0.88 0.08 0.04
Matches are distributed among these distances:
39 39 0.14
40 222 0.81
41 12 0.04
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:77926931 original size:41 final size:41
Alignment explanation
Indices: 77926854--77926931 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
77926844 TTTGTATCTC
* * *
77926854 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
77926895 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
77926932 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:77937163 original size:29 final size:29
Alignment explanation
Indices: 77937121--77937222 Score: 125
Period size: 29 Copynumber: 3.6 Consensus size: 29
77937111 TGAAAGTGAC
*
77937121 TGGGCCTAAGGGGCCATATAAATGTGATT
1 TGGGCCTAATGGGCCATATAAATGTGATT
* * *
77937150 TAGGCCTAATGGGCCATATATAGGTGATT
1 TGGGCCTAATGGGCCATATAAATGTGATT
** *
77937179 TGGGCCTAATGGGCCATACGAATATGA-T
1 TGGGCCTAATGGGCCATATAAATGTGATT
*
77937207 TGGGCCTATTGGGCCA
1 TGGGCCTAATGGGCCA
77937223 GATACAGGTA
Statistics
Matches: 62, Mismatches: 11, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
28 16 0.26
29 46 0.74
ACGTcount: A:0.25, C:0.17, G:0.30, T:0.27
Consensus pattern (29 bp):
TGGGCCTAATGGGCCATATAAATGTGATT
Found at i:77937193 original size:58 final size:57
Alignment explanation
Indices: 77937121--77937231 Score: 141
Period size: 58 Copynumber: 1.9 Consensus size: 57
77937111 TGAAAGTGAC
* * * *
77937121 TGGGCCTAAGGGGCCATATAAATGTGATTTAGGCCTAATGGGCCATATATAGGTGATT
1 TGGGCCTAAGGGGCCATACAAATATGA-TTAGGCCTAATGGGCCAGATACAGGTGATT
* * * *
77937179 TGGGCCTAATGGGCCATACGAATATGATTGGGCCTATTGGGCCAGATACAGGT
1 TGGGCCTAAGGGGCCATACAAATATGATTAGGCCTAATGGGCCAGATACAGGT
77937232 ATGTGAATTT
Statistics
Matches: 45, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
57 22 0.49
58 23 0.51
ACGTcount: A:0.26, C:0.16, G:0.31, T:0.27
Consensus pattern (57 bp):
TGGGCCTAAGGGGCCATACAAATATGATTAGGCCTAATGGGCCAGATACAGGTGATT
Found at i:77941107 original size:80 final size:78
Alignment explanation
Indices: 77941023--77941193 Score: 218
Period size: 78 Copynumber: 2.2 Consensus size: 78
77941013 GGACTAAGAT
*
77941023 CCGAAGGCATTTGTGCGAGATA-CAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACT
1 CCGAAGGCATTTGTGCGAGATATCAAA-TCCGGGTT-AGCCCCGAAGG-CATTGTGCGAGATACT
* *
77941087 AAATCCGGGTTAAGTC
63 AAAACCGGGCTAAGTC
* * * * * *
77941103 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAGCCCCGAAGGCATTGTGCGAGATACTAAA
*
77941168 ACCGGGCTATGTC
66 ACCGGGCTAAGTC
77941181 CCGAAGGCATTTG
1 CCGAAGGCATTTG
77941194 AACGAGGAGC
Statistics
Matches: 79, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
78 38 0.48
79 10 0.13
80 28 0.35
81 3 0.04
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (78 bp):
CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAGCCCCGAAGGCATTGTGCGAGATACTAAA
ACCGGGCTAAGTC
Found at i:77941182 original size:39 final size:38
Alignment explanation
Indices: 77941023--77941191 Score: 196
Period size: 40 Copynumber: 4.3 Consensus size: 38
77941013 GGACTAAGAT
* *
77941023 CCGAAGGCATTTGTGCGAGATAC-AAATTCCGGGTTAAGCC
1 CCGAAGGCA-TTGTGCGAGTTACTAAA-TCCGGGTT-AGTC
* *
77941063 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGG-CATTGTGCGAGTTACTAAATCCGGGTT-AGTC
*
77941103 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAGTC
1 CCGAAGGCATT-GTGCGAGTTACTAAATCCGGGTTAGTC
* * *
77941142 CCGAAGGCATTGTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTGTGCGAGTTACTAAATCCGGGTTA-GTC
77941181 CCGAAGGCATT
1 CCGAAGGCATT
77941192 TGAACGAGGA
Statistics
Matches: 116, Mismatches: 9, Indels: 9
0.87 0.07 0.07
Matches are distributed among these distances:
38 20 0.17
39 32 0.28
40 60 0.52
41 4 0.03
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (38 bp):
CCGAAGGCATTGTGCGAGTTACTAAATCCGGGTTAGTC
Found at i:77941211 original size:78 final size:80
Alignment explanation
Indices: 77941050--77941226 Score: 191
Period size: 78 Copynumber: 2.2 Consensus size: 80
77941040 AGATACAAAT
* * * *
77941050 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
** * *
77941115 GTGCGAGTTATTAAA
66 GAACGAGTGACTAAA
* * * *
77941130 TCCGGGTT-AGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
*
77941193 GAACGAG-GAGCTATA
66 GAACGAGTGA-CTAAA
*
77941208 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
77941227 TACGTGATTT
Statistics
Matches: 81, Mismatches: 14, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
77 5 0.06
78 58 0.72
79 10 0.12
80 8 0.10
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.24
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
GAACGAGTGACTAAA
Found at i:77948996 original size:39 final size:39
Alignment explanation
Indices: 77948944--77949114 Score: 211
Period size: 39 Copynumber: 4.3 Consensus size: 39
77948934 GGACTAAGAT
77948944 CCGAAGGCATTTGTGCGAGATACAAATTCCGGGTTAAG-C
1 CCGAAGGCATTTGTGCGAGATACAAA-TCCGGGTTAAGTC
*
77948983 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGATAC-AAATCCGGGTTAAGTC
* * *
77949023 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGATA-CAAATCCGGGTTAAGTC
* * * * *
77949063 CCGAAGGCA-TTGTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTTGTGCGAGATAC-AAATCCGGGTTAAGTC
77949102 CCGAAGGCATTTG
1 CCGAAGGCATTTG
77949115 AACGAGGAGC
Statistics
Matches: 116, Mismatches: 11, Indels: 9
0.85 0.08 0.07
Matches are distributed among these distances:
39 65 0.56
40 51 0.44
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (39 bp):
CCGAAGGCATTTGTGCGAGATACAAATCCGGGTTAAGTC
Found at i:77949027 original size:79 final size:79
Alignment explanation
Indices: 77948891--77949114 Score: 231
Period size: 79 Copynumber: 2.8 Consensus size: 79
77948881 TTGAATGCTG
* * * * * * *
77948891 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTA-AGTGAATATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGA-T-ACTAAAACCGGGCTAAG-TCCCGAAGGCAT
77948954 TTGTGCGAGATA-CAAA
63 TTGTGCGAGATATCAAA
* * *
77948970 TTCCGGGTTAAG-CCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATT
1 -TCCGGGTTAAGTCCCGAAGG-CATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATT
* * *
77949034 CGTGCGAGTTATTAAA
64 TGTGCGAGATATCAAA
* * *
77949050 TCCGGGTTAAGTCCCGAAGGCATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTTG
77949115 AACGAGGAGC
Statistics
Matches: 123, Mismatches: 16, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
78 1 0.01
79 90 0.73
80 31 0.25
81 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTTG
TGCGAGATATCAAA
Found at i:77949132 original size:79 final size:80
Alignment explanation
Indices: 77948971--77949147 Score: 200
Period size: 79 Copynumber: 2.2 Consensus size: 80
77948961 AGATACAAAT
* * *
77948971 TCCGGGTTAAG-CCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
** * *
77949035 GTGCGAGTTATTAAA
66 GAACGAGTGACTAAA
* * * *
77949050 TCCGGGTTAAGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
*
77949114 GAACGAG-GAGCTATA
66 GAACGAGTGA-CTAAA
*
77949129 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
77949148 TACGTGATTT
Statistics
Matches: 83, Mismatches: 13, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
78 16 0.19
79 59 0.71
80 8 0.10
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.24
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
GAACGAGTGACTAAA
Found at i:77956463 original size:39 final size:39
Alignment explanation
Indices: 77956330--77956585 Score: 289
Period size: 39 Copynumber: 6.6 Consensus size: 39
77956320 TTGAATGATG
* *
77956330 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGGAC-AAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
77956367 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
77956408 T----GCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
77956443 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
* *
77956482 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
* *
77956521 TCCGGGTTAAGTCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
77956559 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAG-CCCGAAGGCATTTG
77956586 AACGAGGAGC
Statistics
Matches: 190, Mismatches: 17, Indels: 20
0.84 0.07 0.09
Matches are distributed among these distances:
35 28 0.15
36 5 0.03
38 19 0.10
39 111 0.58
40 23 0.12
41 4 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:77956607 original size:78 final size:78
Alignment explanation
Indices: 77956375--77956618 Score: 245
Period size: 78 Copynumber: 3.2 Consensus size: 78
77956365 ATATCCGGAC
* **
77956375 TAAGATCCGAAGGCATTTGTGCGAGATACTAAT----TGCTAAGCCCGAAGGCATTTGTGCGAGA
1 TAAG-TCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAG-
* *
77956436 T-ACTAATTCCGGGC
64 TGACTAAATCCGGGT
* * ** *
77956450 TAAGCCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTT
1 TAAGTCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTG
77956515 ACTAAATCCGGGT
66 ACTAAATCCGGGT
*
77956528 TAAGTCCGAAGGCATTTGTGCGA-ATTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGA
1 TAAGTCCGAAGGCATTTGTGCGAGA-TACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGA
*
77956591 G-GAGCTATATCC-GGT
63 GTGA-CTAAATCCGGGT
*
77956606 TAAATTCCGAAGG
1 T-AAGTCCGAAGG
77956619 TACGTGATTT
Statistics
Matches: 147, Mismatches: 12, Indels: 16
0.84 0.07 0.09
Matches are distributed among these distances:
74 27 0.18
75 4 0.03
77 4 0.03
78 77 0.52
79 35 0.24
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.25
Consensus pattern (78 bp):
TAAGTCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTG
ACTAAATCCGGGT
Found at i:77958056 original size:27 final size:27
Alignment explanation
Indices: 77958000--77958501 Score: 543
Period size: 27 Copynumber: 18.7 Consensus size: 27
77957990 GGGCAAAATG
* * * * *
77958000 GTAATTTTACCCCACA-AGGTATCTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
77958026 GTAATTCTACCTTACAGGGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTCA
77958053 GTAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* * *
77958080 GTAATTCTACCTTACAAGGGTATTGC-
1 GTAATTCTACCCTACAGGGGTATTTCA
77958106 GATAATTCTACCCTACAGGGGTATTTCA
1 G-TAATTCTACCCTACAGGGGTATTTCA
*
77958134 GTAATTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
77958161 GTAATTCTACCTTACAGGGATATTTC-
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
77958187 GATAATTCTACCCTATAAGGGTATTTCA
1 G-TAATTCTACCCTACAGGGGTATTTCA
* * *
77958215 GTAA---TACCATATAGGGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
77958239 GTAATTCTACCATATAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
77958266 GTAATTCTACCATATAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* * * *
77958293 GTAATTCTACCTTATAGGAGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
77958320 GTAATTTTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
* * *
77958347 GTAATTCTATCTTACAGGGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTCA
* * *
77958374 GTAATTTTACCCTACAGCGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
77958401 GTAATTCTACCTTATAAGGGGTATTTCA
1 GTAATTCTACCCTA-CAGGGGTATTTCA
* *
77958429 GTAATTCTACACTACAGGGGTA-TTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
* * *
77958455 GTAATTCTACCTTACAAGGGTATTGC-
1 GTAATTCTACCCTACAGGGGTATTTCA
77958481 GATAATTCTACCCTACAGGGG
1 G-TAATTCTACCCTACAGGGG
77958502 CTTTACAGTC
Statistics
Matches: 404, Mismatches: 61, Indels: 21
0.83 0.13 0.04
Matches are distributed among these distances:
24 21 0.05
26 38 0.09
27 321 0.79
28 24 0.06
ACGTcount: A:0.27, C:0.18, G:0.19, T:0.36
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGTATTTCA
Found at i:77958566 original size:108 final size:106
Alignment explanation
Indices: 77958013--77958572 Score: 444
Period size: 108 Copynumber: 5.2 Consensus size: 106
77958003 ATTTTACCCC
* *
77958013 ACAA-GGTATCTCGGTAATTCTACCTTACAGGGGTATTTTAGTAATTCTACCCTACAGGGGTATT
1 ACAAGGGTATTTCGGTAATTCTACCTTACAGGGGTA-TTCAGTAATTCTACCCTACAGGGGTATT
* * ** * *
77958077 TCAGTAATTCTACCT-TACAAGGGTA-TTGCGATAATTCTACCCT
65 TCAGTAATTCTACCTAT-TAGGGGTATTTTAG-TATTTC-ATCCT
* * * * * *
77958120 ACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCTTACAGGGATATT
1 ACAAGGGTATTTCGGTAATTCTACCTTACAGGGGTA-TTCAGTAATTCTACCCTACAGGGGTATT
* * *
77958185 TC-GATAATTCTACCCTA-TAAGGGTATTTCAGTA-AT-A-CCAT
65 TCAG-TAATTCTA-CCTATTAGGGGTATTTTAGTATTTCATCC-T
* * ** * * * *
77958225 ATAGGGGTATTTTAGTAATTCTACCATATAGGGGTATTTCAGTAATTCTACCATATAGGGGTATT
1 ACAAGGGTATTTCGGTAATTCTACCTTACAGGGGTA-TTCAGTAATTCTACCCTACAGGGGTATT
* * *
77958290 TCAGTAATTCTACCT-TATAGGAGTATTTTAGTAATTTTACCCT
65 TCAGTAATTCTACCTAT-TAGGGGTATTTTAGT-ATTTCATCCT
* * * * *
77958333 ACAGGGGTATTTCGGTAATTCTATCTTACAGGGGTATTTTAGTAATTTTACCCTACAGCGGTATT
1 ACAAGGGTATTTCGGTAATTCTACCTTACAGGGGTA-TTCAGTAATTCTACCCTACAGGGGTATT
* * * *
77958398 TCGGTAATTCTACCTTATAAGGGGTATTTCAGTAATTC-TACACT
65 TCAGTAATTCTACC-TATTAGGGGTATTTTAGTATTTCAT-C-CT
* *
77958442 ACAGGGGTA-TTCGGTAATTCTACCTTACAAGGGTATTGC-GATAATTCTACCCTACAGGGGCT-
1 ACAAGGGTATTTCGGTAATTCTACCTTACAGGGGTATT-CAG-TAATTCTACCCTACAGGGG-TA
* ** *
77958504 TTACAGTCTTTTTACCTATTAGGGGTATTTTAGTCATTTCATCCT
63 TTTCAGTAATTCTACCTATTAGGGGTATTTTAGT-ATTTCATCCT
* * *
77958549 ACAAGGGTGTTTTGGTAAATCTAC
1 ACAAGGGTATTTCGGTAATTCTAC
77958573 AAACCAAGGG
Statistics
Matches: 371, Mismatches: 59, Indels: 45
0.78 0.12 0.09
Matches are distributed among these distances:
104 5 0.01
105 81 0.22
106 2 0.01
107 34 0.09
108 214 0.58
109 34 0.09
110 1 0.00
ACGTcount: A:0.27, C:0.17, G:0.19, T:0.37
Consensus pattern (106 bp):
ACAAGGGTATTTCGGTAATTCTACCTTACAGGGGTATTCAGTAATTCTACCCTACAGGGGTATTT
CAGTAATTCTACCTATTAGGGGTATTTTAGTATTTCATCCT
Found at i:77958603 original size:27 final size:27
Alignment explanation
Indices: 77958573--77958680 Score: 94
Period size: 27 Copynumber: 3.9 Consensus size: 27
77958563 GTAAATCTAC
77958573 AAACCAAGGGTATTTCAGTAATTTTGT
1 AAACCAAGGGTATTTCAGTAATTTTGT
*
77958600 AAACCAATGGTATTTCTA-TAATTTT-T
1 AAACCAAGGGTATTTC-AGTAATTTTGT
* **
77958626 AGAAAGTCAAGGGTATTTTTGTAATTTTGT
1 --AAA-CCAAGGGTATTTCAGTAATTTTGT
* * **
77958656 AAATCAGGGGTATTTTGGTAATTTT
1 AAACCAAGGGTATTTCAGTAATTTT
77958681 ACAAATTGAG
Statistics
Matches: 68, Mismatches: 7, Indels: 12
0.78 0.08 0.14
Matches are distributed among these distances:
26 1 0.01
27 42 0.62
28 7 0.10
29 17 0.25
30 1 0.01
ACGTcount: A:0.31, C:0.07, G:0.19, T:0.43
Consensus pattern (27 bp):
AAACCAAGGGTATTTCAGTAATTTTGT
Found at i:77958686 original size:27 final size:27
Alignment explanation
Indices: 77958622--77958786 Score: 167
Period size: 27 Copynumber: 6.1 Consensus size: 27
77958612 TTTCTATAAT
* * *
77958622 TTTTAGAAAGTCAAGGGTATTTTTGTAA
1 TTTTACAAA-TCAGGGGTATTTTGGTAA
**
77958650 TTTTGTAAATCAGGGGTATTTTGGTAA
1 TTTTACAAATCAGGGGTATTTTGGTAA
*
77958677 TTTTACAAAT-TGAGGGTATTTTGGTAA
1 TTTTACAAATCAG-GGGTATTTTGGTAA
* * *
77958704 TTTCACAAAAT-AGTGGTATTTCGGTAA
1 TTTTAC-AAATCAGGGGTATTTTGGTAA
77958731 TTTTACAAA-CTAGGGGTATTTTGGTAA
1 TTTTACAAATC-AGGGGTATTTTGGTAA
*
77958758 TTTTACAAA-CTAGGGGTATTTTGATAA
1 TTTTACAAATC-AGGGGTATTTTGGTAA
77958785 TT
1 TT
77958787 CTATCCTATA
Statistics
Matches: 118, Mismatches: 15, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
26 4 0.03
27 102 0.86
28 12 0.10
ACGTcount: A:0.30, C:0.06, G:0.21, T:0.42
Consensus pattern (27 bp):
TTTTACAAATCAGGGGTATTTTGGTAA
Found at i:77958722 original size:54 final size:54
Alignment explanation
Indices: 77958656--77958819 Score: 188
Period size: 54 Copynumber: 3.0 Consensus size: 54
77958646 GTAATTTTGT
*
77958656 AAATCAGGGGTATTTTGGTAATTTTACAAA-TTGAGGGTATTTTGGTAATTTCACA
1 AAAT-AGGGGTATTTTGGTAATTTTACAAACTAG-GGGTATTTTGGTAATTTCACA
* * *
77958711 AAATAGTGGTATTTCGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACA
1 AAATAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTCACA
* * * ** **
77958765 AACTAGGGGTATTTTGATAATTCTATCCTA-TAGGGGTATTTCAGTAATTTCACA
1 AAATAGGGGTATTTTGGTAATTTTA-CAAACTAGGGGTATTTTGGTAATTTCACA
77958819 A
1 A
77958820 TCGAGGGTAA
Statistics
Matches: 93, Mismatches: 14, Indels: 5
0.83 0.12 0.04
Matches are distributed among these distances:
54 85 0.91
55 8 0.09
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (54 bp):
AAATAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTCACA
Found at i:77958803 original size:81 final size:81
Alignment explanation
Indices: 77958661--77958819 Score: 207
Period size: 81 Copynumber: 2.0 Consensus size: 81
77958651 TTTGTAAATC
* * *
77958661 AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTTGGTAATTTCACAAAATAGTGGTATTTC
1 AGGGGTATTTTGGTAATTTTACAAATAGAGGGTATTTTGATAATTTCACAAAATAGGGGTATTTC
* *
77958726 GGTAATTTTACAAACT
66 AGTAATTTCACAAACT
**
77958742 AGGGGTATTTTGGTAATTTTACAAACTAG-GGGTATTTTGATAA-TTCTATC-CTATAGGGGTAT
1 AGGGGTATTTTGGTAATTTTACAAA-TAGAGGGTATTTTGATAATTTC-A-CAAAATAGGGGTAT
77958804 TTCAGTAATTTCACAA
63 TTCAGTAATTTCACAA
77958820 TCGAGGGTAA
Statistics
Matches: 68, Mismatches: 7, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
80 3 0.04
81 62 0.91
82 3 0.04
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.40
Consensus pattern (81 bp):
AGGGGTATTTTGGTAATTTTACAAATAGAGGGTATTTTGATAATTTCACAAAATAGGGGTATTTC
AGTAATTTCACAAACT
Found at i:77958826 original size:27 final size:27
Alignment explanation
Indices: 77958657--77958826 Score: 134
Period size: 27 Copynumber: 6.3 Consensus size: 27
77958647 TAATTTTGTA
*
77958657 AATC-AGGGGTATTTTGGTAATTTTAC
1 AATCTAGGGGTATTTTGGTAATTTCAC
77958683 AAAT-T-GAGGGTATTTTGGTAATTTCAC
1 -AATCTAG-GGGTATTTTGGTAATTTCAC
** * * *
77958710 AAAATAGTGGTATTTCGGTAATTTTAC
1 AATCTAGGGGTATTTTGGTAATTTCAC
* *
77958737 AAACTAGGGGTATTTTGGTAATTTTAC
1 AATCTAGGGGTATTTTGGTAATTTCAC
* *
77958764 AAACTAGGGGTATTTTGATAA-TTCTATC
1 AATCTAGGGGTATTTTGGTAATTTC-A-C
* * **
77958792 -CTATAGGGGTATTTCAGTAATTTCAC
1 AATCTAGGGGTATTTTGGTAATTTCAC
*
77958818 AATCGAGGG
1 AATCTAGGG
77958827 TAAAACGGTA
Statistics
Matches: 116, Mismatches: 19, Indels: 16
0.77 0.13 0.11
Matches are distributed among these distances:
26 6 0.05
27 105 0.91
28 5 0.04
ACGTcount: A:0.30, C:0.09, G:0.22, T:0.39
Consensus pattern (27 bp):
AATCTAGGGGTATTTTGGTAATTTCAC
Found at i:77958938 original size:81 final size:81
Alignment explanation
Indices: 77958818--77958990 Score: 249
Period size: 81 Copynumber: 2.1 Consensus size: 81
77958808 GTAATTTCAC
* * * *
77958818 AATCGAGGGTAAAACGGTAATTTTGTAAACAAAGTGTAAAATGGTAATTTTGTAAATCGAGGGTA
1 AATCGAGGGTAAAACGGTAATTCTATAAACAAAGGGTAAAATAGTAATTTTGTAAATCGAGGGTA
77958883 AAATAGTAATTCTGTA
66 AAATAGTAATTCTGTA
* * *
77958899 AATTGAGGGTAAAATGGTAATTCTATAAATC-GAGGGTAAAATAGTAATTTTGTAAATCGAGGGT
1 AATCGAGGGTAAAACGGTAATTCTATAAA-CAAAGGGTAAAATAGTAATTTTGTAAATCGAGGGT
* *
77958963 GAATTAGTAATTCTGTA
65 AAAATAGTAATTCTGTA
77958980 AATCGAGGGTA
1 AATCGAGGGTA
77958991 CTTTGGTAAT
Statistics
Matches: 81, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
81 80 0.99
82 1 0.01
ACGTcount: A:0.39, C:0.06, G:0.24, T:0.31
Consensus pattern (81 bp):
AATCGAGGGTAAAACGGTAATTCTATAAACAAAGGGTAAAATAGTAATTTTGTAAATCGAGGGTA
AAATAGTAATTCTGTA
Found at i:77959001 original size:27 final size:27
Alignment explanation
Indices: 77958818--77958990 Score: 213
Period size: 27 Copynumber: 6.4 Consensus size: 27
77958808 GTAATTTCAC
** *
77958818 AATCGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAATAGTAATTCTGTA
* * * *
77958845 AA-CAAAGTGTAAAATGGTAATTTTGTA
1 AATC-GAGGGTAAAATAGTAATTCTGTA
77958872 AATCGAGGGTAAAATAGTAATTCTGTA
1 AATCGAGGGTAAAATAGTAATTCTGTA
* * *
77958899 AATTGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAATAGTAATTCTGTA
*
77958926 AATCGAGGGTAAAATAGTAATTTTGTA
1 AATCGAGGGTAAAATAGTAATTCTGTA
* *
77958953 AATCGAGGGTGAATTAGTAATTCTGTA
1 AATCGAGGGTAAAATAGTAATTCTGTA
77958980 AATCGAGGGTA
1 AATCGAGGGTA
77958991 CTTTGGTAAT
Statistics
Matches: 126, Mismatches: 18, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
26 1 0.01
27 124 0.98
28 1 0.01
ACGTcount: A:0.39, C:0.06, G:0.24, T:0.31
Consensus pattern (27 bp):
AATCGAGGGTAAAATAGTAATTCTGTA
Found at i:77959026 original size:54 final size:54
Alignment explanation
Indices: 77958861--77959028 Score: 149
Period size: 54 Copynumber: 3.1 Consensus size: 54
77958851 GTGTAAAATG
* * * ** * * * *
77958861 GTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTGTAAATTGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATAGTAATTTTACAAATCGAGGGTCAATTA
** *
77958915 GTAATTCTATAAATCGAGGGTAAAATAGTAATTTTGTAAATCGAGGGTGAATTA
1 GTAATTCTATAAATCGAGGGTAAAATAGTAATTTTACAAATCGAGGGTCAATTA
* *** * * *
77958969 GTAATTCTGTAAATCGAGGGTACTTTGGTAATTTTACAAATTGAGGG-CATTTCA
1 GTAATTCTATAAATCGAGGGTAAAATAGTAATTTTACAAATCGAGGGTCAATT-A
77959023 GTAATT
1 GTAATT
77959029 TGGTAAACTA
Statistics
Matches: 96, Mismatches: 17, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
53 3 0.03
54 93 0.97
ACGTcount: A:0.36, C:0.07, G:0.23, T:0.35
Consensus pattern (54 bp):
GTAATTCTATAAATCGAGGGTAAAATAGTAATTTTACAAATCGAGGGTCAATTA
Found at i:77959035 original size:81 final size:81
Alignment explanation
Indices: 77958818--77959015 Score: 236
Period size: 81 Copynumber: 2.4 Consensus size: 81
77958808 GTAATTTCAC
* * ** * * *
77958818 AATCGAGGGTAAAACGGTAATTTTGTAAA-CAAAGTGTAAAATGGTAATTTTGTAAATCGAGGGT
1 AATCGAGGGTAAAATGGTAATTCTACAAATC-GAGGGTAAAATAGTAATTTTGTAAATCGAGGGT
77958882 AAAATAGTAATTCTGTA
65 AAAATAGTAATTCTGTA
* * *
77958899 AATTGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATAGTAATTTTGTAAATCGAGGGTG
1 AATCGAGGGTAAAATGGTAATTCTACAAATCGAGGGTAAAATAGTAATTTTGTAAATCGAGGGTA
*
77958964 AATTAGTAATTCTGTA
66 AAATAGTAATTCTGTA
*** * *
77958980 AATCGAGGGTACTTTGGTAATTTTACAAATTGAGGG
1 AATCGAGGGTAAAATGGTAATTCTACAAATCGAGGG
77959016 CATTTCAGTA
Statistics
Matches: 100, Mismatches: 16, Indels: 2
0.85 0.14 0.02
Matches are distributed among these distances:
81 99 0.99
82 1 0.01
ACGTcount: A:0.38, C:0.06, G:0.24, T:0.32
Consensus pattern (81 bp):
AATCGAGGGTAAAATGGTAATTCTACAAATCGAGGGTAAAATAGTAATTTTGTAAATCGAGGGTA
AAATAGTAATTCTGTA
Found at i:77964638 original size:93 final size:93
Alignment explanation
Indices: 77964526--77964698 Score: 276
Period size: 93 Copynumber: 1.9 Consensus size: 93
77964516 CGCCCATAAG
* *
77964526 CGAACTCGGACTCAACTCAACAAACTC-AGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACAAACTCGA-ACATTCGCATCCATAAGTGAACTCGGACTCAACTC
77964590 AACGAGCTCGGATGCCTAGTTACATCTCT
65 AACGAGCTCGGATGCCTAGTTACATCTCT
* **
77964619 CGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACAAACTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
77964684 ACGAGTTCGGATGCC
66 ACGAGCTCGGATGCC
77964699 CAAATATCCC
Statistics
Matches: 73, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
93 72 0.99
94 1 0.01
ACGTcount: A:0.29, C:0.31, G:0.19, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACAAACTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCT
Found at i:77964692 original size:46 final size:45
Alignment explanation
Indices: 77964519--77964688 Score: 164
Period size: 46 Copynumber: 3.7 Consensus size: 45
77964509 TGTAACTCGC
* * * * *
77964519 CCATAAGCGAACTCGGACTCAACTCAACAAACTCAGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTC-GACATTCGCAT
* *
77964565 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCG-GATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGACATTCGC-A--T
* *** *
77964611 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCG-ACATTCGCAT
77964658 CCATAAGTGAACTCGGACTCAACTCAACGAG
1 CCATAAGTGAACTCGGACTCAACTCAACGAG
77964689 TTCGGATGCC
Statistics
Matches: 100, Mismatches: 17, Indels: 14
0.76 0.13 0.11
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 59 0.59
47 31 0.31
49 4 0.04
50 1 0.01
ACGTcount: A:0.31, C:0.31, G:0.18, T:0.20
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGACATTCGCAT
Found at i:77964713 original size:46 final size:45
Alignment explanation
Indices: 77964570--77964700 Score: 124
Period size: 47 Copynumber: 2.8 Consensus size: 45
77964560 CGCATCCATA
* *
77964570 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA--TACATC-C
* * * * *
77964618 --TCGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCAT-A
1 AGT-GAACTCGGACTCAACTCAACGAGTTCG--GATGCCCATACATCC
77964663 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA
77964701 AATATCCCAG
Statistics
Matches: 68, Mismatches: 10, Indels: 14
0.74 0.11 0.15
Matches are distributed among these distances:
44 5 0.07
46 28 0.41
47 31 0.46
49 4 0.06
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCATACATCC
Found at i:77967078 original size:30 final size:30
Alignment explanation
Indices: 77967026--77967122 Score: 99
Period size: 30 Copynumber: 3.2 Consensus size: 30
77967016 TTATGGAACA
*
77967026 AAGATAACAGGAAAACC-GAATAAAGAAATCC
1 AAGATAA-A-GAAACCCAGAATAAAGAAATCC
*
77967057 AAGATAGAGAAACCCAGAATAAAGAAATCC
1 AAGATAAAGAAACCCAGAATAAAGAAATCC
* * * *
77967087 -AGAATAAAGATATCCAGGATAAAGAAACCC
1 AAG-ATAAAGAAACCCAGAATAAAGAAATCC
77967117 AAGATA
1 AAGATA
77967123 CGATACTATG
Statistics
Matches: 56, Mismatches: 7, Indels: 7
0.80 0.10 0.10
Matches are distributed among these distances:
29 8 0.14
30 40 0.71
31 8 0.14
ACGTcount: A:0.57, C:0.15, G:0.16, T:0.11
Consensus pattern (30 bp):
AAGATAAAGAAACCCAGAATAAAGAAATCC
Found at i:77967082 original size:15 final size:15
Alignment explanation
Indices: 77967043--77967113 Score: 90
Period size: 15 Copynumber: 4.7 Consensus size: 15
77967033 CAGGAAAACC
77967043 GAATAAAGAAATCCA
1 GAATAAAGAAATCCA
* *
77967058 -AGATAGAGAAACCCA
1 GA-ATAAAGAAATCCA
77967073 GAATAAAGAAATCCA
1 GAATAAAGAAATCCA
*
77967088 GAATAAAGATATCCA
1 GAATAAAGAAATCCA
*
77967103 GGATAAAGAAA
1 GAATAAAGAAA
77967114 CCCAAGATAC
Statistics
Matches: 47, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
14 1 0.02
15 45 0.96
16 1 0.02
ACGTcount: A:0.58, C:0.13, G:0.17, T:0.13
Consensus pattern (15 bp):
GAATAAAGAAATCCA
Found at i:77967122 original size:15 final size:15
Alignment explanation
Indices: 77967045--77967122 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
77967035 GGAAAACCGA
77967045 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
77967060 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
77967074 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
77967089 AATAAAGATATCCAGG
1 -ATAAAGAAATCCAAG
*
77967105 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
77967120 ATA
1 ATA
77967123 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.15, T:0.13
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:77967330 original size:74 final size:74
Alignment explanation
Indices: 77967247--77967396 Score: 300
Period size: 74 Copynumber: 2.0 Consensus size: 74
77967237 ATATAACAAG
77967247 ATCAATATATCTTCCCATACATATATATCAGATGAAGCATCAAGTAGAAGAAACAGAATCATAAT
1 ATCAATATATCTTCCCATACATATATATCAGATGAAGCATCAAGTAGAAGAAACAGAATCATAAT
77967312 ATCATACGT
66 ATCATACGT
77967321 ATCAATATATCTTCCCATACATATATATCAGATGAAGCATCAAGTAGAAGAAACAGAATCATAAT
1 ATCAATATATCTTCCCATACATATATATCAGATGAAGCATCAAGTAGAAGAAACAGAATCATAAT
77967386 ATCATACGT
66 ATCATACGT
77967395 AT
1 AT
77967397 TCTCTCATCA
Statistics
Matches: 76, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
74 76 1.00
ACGTcount: A:0.45, C:0.17, G:0.11, T:0.27
Consensus pattern (74 bp):
ATCAATATATCTTCCCATACATATATATCAGATGAAGCATCAAGTAGAAGAAACAGAATCATAAT
ATCATACGT
Found at i:77970179 original size:46 final size:46
Alignment explanation
Indices: 77970112--77970277 Score: 171
Period size: 46 Copynumber: 3.6 Consensus size: 46
77970102 TGTAACCCGC
* *
77970112 CCATAAGCGAACTCGGACTCAACTCAATGAACTCGAGCGTTCACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGAGCGTTCACAT
*
77970158 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTC-GA-G-C--GTTCACAT
* * * *
77970208 CTC-T---CGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCAT
1 C-CATAAGCGAACTCGGACTCAACTCAACGAGCTCGAGCGTTCACAT
*
77970251 CCATAAGTGAACTCGGACTCAACTCAA
1 CCATAAGCGAACTCGGACTCAACTCAA
77970278 TGAGTTTGGA
Statistics
Matches: 100, Mismatches: 9, Indels: 22
0.76 0.07 0.17
Matches are distributed among these distances:
42 3 0.03
43 5 0.05
44 1 0.01
46 52 0.52
47 27 0.27
48 1 0.01
49 1 0.01
50 6 0.06
51 4 0.04
ACGTcount: A:0.31, C:0.30, G:0.17, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGAGCGTTCACAT
Found at i:77970252 original size:93 final size:93
Alignment explanation
Indices: 77970119--77970291 Score: 265
Period size: 93 Copynumber: 1.9 Consensus size: 93
77970109 CGCCCATAAG
* * *
77970119 CGAACTCGGACTCAACTCAATGAACTCGAGCGTTCACATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAACTCGAACATTCACATCCATAAGTGAACTCGGACTCAACTCA
77970184 ACGAGCTCGGATGCCTAGTTACATCTCT
66 ACGAGCTCGGATGCCTAGTTACATCTCT
** *
77970212 CGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAACTCGAACATTCACATCCATAAGTGAACTCGGACTCAACTCA
* * *
77970277 ATGAGTTTGGATGCC
66 ACGAGCTCGGATGCC
77970292 CAAATATCCC
Statistics
Matches: 71, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.23
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAACTCGAACATTCACATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCT
Found at i:77977070 original size:40 final size:40
Alignment explanation
Indices: 77976999--77977140 Score: 196
Period size: 40 Copynumber: 3.5 Consensus size: 40
77976989 TACTCGTCAG
* * *
77976999 ATGCCTTTGGGACATAGCCCGG-TTATAGTAACTCGCACCA
1 ATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACAA
* * *
77977039 ATGGCTTCGAGACTTAGCCCGGATTTGGTAACTCGCACAA
1 ATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAA
* *
77977079 ATGCCTTCGGGACATAGCCCGGAATTAGTAACTCGCACAA
1 ATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAA
77977119 ATGCCTTCGGGACTTAGCCCGG
1 ATGCCTTCGGGACTTAGCCCGG
77977141 TTATCATCCG
Statistics
Matches: 89, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
40 87 0.98
41 2 0.02
ACGTcount: A:0.25, C:0.27, G:0.25, T:0.23
Consensus pattern (40 bp):
ATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAA
Found at i:77978927 original size:14 final size:15
Alignment explanation
Indices: 77978910--77978941 Score: 57
Period size: 14 Copynumber: 2.2 Consensus size: 15
77978900 AAATCACAAA
77978910 AAATTCACACAT-AT
1 AAATTCACACATAAT
77978924 AAATTCACACATAAT
1 AAATTCACACATAAT
77978939 AAA
1 AAA
77978942 CACAGAAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 12 0.71
15 5 0.29
ACGTcount: A:0.56, C:0.19, G:0.00, T:0.25
Consensus pattern (15 bp):
AAATTCACACATAAT
Found at i:77980674 original size:21 final size:21
Alignment explanation
Indices: 77980648--77980701 Score: 63
Period size: 21 Copynumber: 2.6 Consensus size: 21
77980638 GATTTGATGT
77980648 AGTGTCGTGACACCAACCCTC
1 AGTGTCGTGACACCAACCCTC
** * *
77980669 AGTGTCACGAAACCGACCCTC
1 AGTGTCGTGACACCAACCCTC
*
77980690 AATGTCGTGACA
1 AGTGTCGTGACA
77980702 TCACATTTTG
Statistics
Matches: 25, Mismatches: 8, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.28, C:0.33, G:0.20, T:0.19
Consensus pattern (21 bp):
AGTGTCGTGACACCAACCCTC
Found at i:77986001 original size:34 final size:34
Alignment explanation
Indices: 77985963--77986057 Score: 145
Period size: 34 Copynumber: 2.8 Consensus size: 34
77985953 GCGAATACAT
* * *
77985963 TCTGGGCCTAAGCCCATATCAGTAACAGTAGCTG
1 TCTGGGCCTTAGCCCATTTCAGTAACAGTAGCGG
*
77985997 TCTGGGCCTTAGCCCATTTTAGTAACAGTAGCGG
1 TCTGGGCCTTAGCCCATTTCAGTAACAGTAGCGG
*
77986031 TCTGGGCTTTAGCCCATTTCAGTAACA
1 TCTGGGCCTTAGCCCATTTCAGTAACA
77986058 TTAATTAGTG
Statistics
Matches: 55, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
34 55 1.00
ACGTcount: A:0.23, C:0.25, G:0.23, T:0.28
Consensus pattern (34 bp):
TCTGGGCCTTAGCCCATTTCAGTAACAGTAGCGG
Found at i:77986499 original size:27 final size:27
Alignment explanation
Indices: 77986453--77986574 Score: 183
Period size: 27 Copynumber: 4.5 Consensus size: 27
77986443 AGAAATTCTA
*
77986453 TCATTTTACCTTACTG-GGGTATTTCGG
1 TCATTTTACCCTA-TGAGGGTATTTCGG
*
77986480 TCATTTTACCCTATGAGGGTATTTTGG
1 TCATTTTACCCTATGAGGGTATTTCGG
* *
77986507 TCATTTTACCCGATGGGGGTATTTCGG
1 TCATTTTACCCTATGAGGGTATTTCGG
*
77986534 TCATTTTACCCTATGAGGGTATTTCGA
1 TCATTTTACCCTATGAGGGTATTTCGG
77986561 TCATTTTACCCTAT
1 TCATTTTACCCTAT
77986575 AAGGTCAAAA
Statistics
Matches: 86, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
26 2 0.02
27 84 0.98
ACGTcount: A:0.18, C:0.19, G:0.20, T:0.43
Consensus pattern (27 bp):
TCATTTTACCCTATGAGGGTATTTCGG
Found at i:77992428 original size:47 final size:46
Alignment explanation
Indices: 77992331--77992441 Score: 127
Period size: 47 Copynumber: 2.3 Consensus size: 46
77992321 CCAGGATAAG
* *
77992331 CACATAGTGCTTCATCGGAACAAATCCAGAACTTTAACATTATAGTA
1 CACAAAGTG-TTCATCGGAACAAATCCAGAACTTTAACAGTATAGTA
*
77992378 CACAAAGTAGTTCATCGGAACAAATCC-GAAACTTTAACAGTAGTCG-A
1 CACAAAGT-GTTCATCGGAACAAATCCAG-AACTTTAACAGTA-TAGTA
*
77992425 CACATAGTGTCTCATCG
1 CACAAAGTGT-TCATCG
77992442 ACTCAATGTC
Statistics
Matches: 56, Mismatches: 4, Indels: 8
0.82 0.06 0.12
Matches are distributed among these distances:
46 3 0.05
47 50 0.89
48 3 0.05
ACGTcount: A:0.37, C:0.23, G:0.15, T:0.25
Consensus pattern (46 bp):
CACAAAGTGTTCATCGGAACAAATCCAGAACTTTAACAGTATAGTA
Found at i:77994118 original size:20 final size:20
Alignment explanation
Indices: 77994093--77994132 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
77994083 AAATACCTGA
*
77994093 TAGTATTGATCCTTTTTCTT
1 TAGTATCGATCCTTTTTCTT
**
77994113 TAGTATCGATGGTTTTTCTT
1 TAGTATCGATCCTTTTTCTT
77994133 AATATATATA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.15, C:0.12, G:0.15, T:0.57
Consensus pattern (20 bp):
TAGTATCGATCCTTTTTCTT
Found at i:77999835 original size:14 final size:14
Alignment explanation
Indices: 77999816--77999845 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
77999806 TGATTGTTTT
77999816 TAATCTAATTTAAC
1 TAATCTAATTTAAC
77999830 TAATCTAATTTAAC
1 TAATCTAATTTAAC
77999844 TA
1 TA
77999846 CGAACACAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.43, C:0.13, G:0.00, T:0.43
Consensus pattern (14 bp):
TAATCTAATTTAAC
Found at i:78001471 original size:18 final size:17
Alignment explanation
Indices: 78001437--78001468 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
78001427 TTTTCTCGAT
78001437 TTTCTTCTCTTTTTTTC
1 TTTCTTCTCTTTTTTTC
78001454 TTTCTT-TCTTTTTTT
1 TTTCTTCTCTTTTTTT
78001469 TTCAATTATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (17 bp):
TTTCTTCTCTTTTTTTC
Found at i:78002459 original size:6 final size:6
Alignment explanation
Indices: 78002448--78002487 Score: 62
Period size: 6 Copynumber: 6.7 Consensus size: 6
78002438 TAAGTCTAAG
* *
78002448 AAAATA ACAATA AACATA AAAATA AAAATA AAAATA AAAA
1 AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAA
78002488 CAAATAGACT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
6 30 1.00
ACGTcount: A:0.80, C:0.05, G:0.00, T:0.15
Consensus pattern (6 bp):
AAAATA
Found at i:78004335 original size:43 final size:42
Alignment explanation
Indices: 78004281--78004438 Score: 194
Period size: 43 Copynumber: 3.7 Consensus size: 42
78004271 ATATCATACA
* *
78004281 ATGCCAATGTCCCAGACATGGTCTTACATGCCATCACATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACACG-AATCACATATCG
* * *
78004324 ATGCCACTGTCCCAGTC-TGGGTCTTACACGAATCAAATA-CG
1 ATGCCAATGTCCCAGACAT-GGTCTTACACGAATCACATATCG
*
78004365 ATGCCAATGTCCCAGACATGTTCTTACACGTAATCACATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACACG-AATCACATATCG
* **
78004408 ATGCCAACGTCCCAGATGTGGTCTTACACGA
1 ATGCCAATGTCCCAGACATGGTCTTACACGA
78004439 GAACATATAT
Statistics
Matches: 98, Mismatches: 13, Indels: 9
0.82 0.11 0.08
Matches are distributed among these distances:
41 27 0.28
42 18 0.18
43 53 0.54
ACGTcount: A:0.28, C:0.29, G:0.18, T:0.25
Consensus pattern (42 bp):
ATGCCAATGTCCCAGACATGGTCTTACACGAATCACATATCG
Found at i:78004422 original size:84 final size:84
Alignment explanation
Indices: 78004276--78004438 Score: 240
Period size: 84 Copynumber: 1.9 Consensus size: 84
78004266 CACACATATC
* *
78004276 ATACAATGCCAATGTCCCAGACATGGTCTTACATGCCATCACATATCGATGCCACTGTCCCAG-T
1 ATACAATGCCAATGTCCCAGACATGGTCTTACACGCAATCACATATCGATGCCACTGTCCCAGAT
*
78004340 CTGGGTCTTACACGAATCAA
66 GT-GGTCTTACACGAATCAA
* * *
78004360 ATACGATGCCAATGTCCCAGACATGTTCTTACACGTAATCACATATCGATGCCAAC-GTCCCAGA
1 ATACAATGCCAATGTCCCAGACATGGTCTTACACGCAATCACATATCGATGCC-ACTGTCCCAGA
78004424 TGTGGTCTTACACGA
65 TGTGGTCTTACACGA
78004439 GAACATATAT
Statistics
Matches: 71, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
84 67 0.94
85 4 0.06
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.25
Consensus pattern (84 bp):
ATACAATGCCAATGTCCCAGACATGGTCTTACACGCAATCACATATCGATGCCACTGTCCCAGAT
GTGGTCTTACACGAATCAA
Found at i:78007355 original size:17 final size:17
Alignment explanation
Indices: 78007326--78007399 Score: 57
Period size: 17 Copynumber: 4.4 Consensus size: 17
78007316 AACTAAAAAC
*
78007326 ATAA-AGAATATAACTA
1 ATAATAGAAAATAACTA
78007342 ATAATAGAAAATAA-TA
1 ATAATAGAAAATAACTA
*
78007358 GATAATA-AACAATAAATA
1 -ATAATAGAA-AATAACTA
*
78007376 A-AGATAATAAAATAACTA
1 ATA-AT-AGAAAATAACTA
78007394 ATAATA
1 ATAATA
78007400 ATAAACAAGA
Statistics
Matches: 48, Mismatches: 2, Indels: 15
0.74 0.03 0.23
Matches are distributed among these distances:
16 9 0.19
17 23 0.48
18 13 0.27
19 3 0.06
ACGTcount: A:0.66, C:0.04, G:0.05, T:0.24
Consensus pattern (17 bp):
ATAATAGAAAATAACTA
Found at i:78007389 original size:18 final size:19
Alignment explanation
Indices: 78007350--78007404 Score: 69
Period size: 18 Copynumber: 2.9 Consensus size: 19
78007340 TAATAATAGA
78007350 AAATAATAGATAATAAACAAT
1 AAATAATAGATAAT-AA-AAT
78007371 AAATAA-AGATAATAAAAT
1 AAATAATAGATAATAAAAT
*
78007389 AACTAATA-ATAATAAA
1 AAATAATAGATAATAAA
78007405 CAAGAAACAA
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
18 16 0.50
19 3 0.09
20 7 0.22
21 6 0.19
ACGTcount: A:0.69, C:0.04, G:0.04, T:0.24
Consensus pattern (19 bp):
AAATAATAGATAATAAAAT
Found at i:78013516 original size:27 final size:27
Alignment explanation
Indices: 78013473--78013525 Score: 88
Period size: 27 Copynumber: 2.0 Consensus size: 27
78013463 ACTCCTAATC
78013473 GATAAAATGACTATTATGCCCCTGTGT
1 GATAAAATGACTATTATGCCCCTGTGT
* *
78013500 GATAAAATGATTGTTATGCCCCTGTG
1 GATAAAATGACTATTATGCCCCTGTG
78013526 AGATGTATGA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.21, T:0.34
Consensus pattern (27 bp):
GATAAAATGACTATTATGCCCCTGTGT
Found at i:78015463 original size:37 final size:37
Alignment explanation
Indices: 78015413--78015488 Score: 116
Period size: 37 Copynumber: 2.1 Consensus size: 37
78015403 TTATTATGAA
* * *
78015413 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
78015450 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
78015487 GT
1 GT
78015489 ATTTAGAGCT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.26, C:0.32, G:0.20, T:0.22
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:78015688 original size:47 final size:47
Alignment explanation
Indices: 78015610--78015832 Score: 322
Period size: 47 Copynumber: 4.7 Consensus size: 47
78015600 CCCTTCGGGA
* * * * * *
78015610 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
78015657 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
78015704 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
78015751 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
78015798 CTTATCTCATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATTCATCACAT
78015833 AGAATCCTAA
Statistics
Matches: 161, Mismatches: 14, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
46 1 0.01
47 160 0.99
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:78019546 original size:40 final size:40
Alignment explanation
Indices: 78019514--78019865 Score: 569
Period size: 40 Copynumber: 8.8 Consensus size: 40
78019504 CCAGCATGAT
* * * *
78019514 TGCTCTTCGAGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
** *
78019554 TGCTCTTCGGGGTTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
78019594 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
78019634 TGCTCCTCGAGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
78019674 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
78019714 TGCTCCTCGGGACTTAGCTCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
78019754 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
78019794 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
78019834 TGCTCTTCAGGACTTAGCCCGGATATATCACT
1 TGCTCTTCGGGACTTAGCCCGGATATATCACT
78019866 CTCAATTCTC
Statistics
Matches: 289, Mismatches: 23, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 289 1.00
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:78019771 original size:23 final size:23
Alignment explanation
Indices: 78019745--78019811 Score: 56
Period size: 23 Copynumber: 3.2 Consensus size: 23
78019735 GATATATCAC
78019745 TAGCACGAATGCTCTTCGGGACT
1 TAGCACGAATGCTCTTCGGGACT
* * * *
78019768 TAGCCCGGAT-AT-ATC---AC-
1 TAGCACGAATGCTCTTCGGGACT
78019785 TAGCACGAATGCTCTTCGGGACT
1 TAGCACGAATGCTCTTCGGGACT
78019808 TAGC
1 TAGC
78019812 CCGGATATAT
Statistics
Matches: 30, Mismatches: 8, Indels: 12
0.60 0.16 0.24
Matches are distributed among these distances:
17 8 0.27
18 3 0.10
19 2 0.07
21 2 0.07
22 3 0.10
23 12 0.40
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (23 bp):
TAGCACGAATGCTCTTCGGGACT
Found at i:78021132 original size:37 final size:37
Alignment explanation
Indices: 78021082--78021160 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
78021072 TTATTACGAA
* * *
78021082 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
78021119 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
78021156 GTCTT
1 GTCTT
78021161 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:78021357 original size:47 final size:47
Alignment explanation
Indices: 78021279--78021548 Score: 425
Period size: 47 Copynumber: 5.7 Consensus size: 47
78021269 CCCTTCGGGA
* * * * *
78021279 CTTATCACAT-TCATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATAT-ATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
78021326 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
78021373 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
78021420 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
78021467 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
78021514 CTTATCTCATATATGCATTTTCACATCCATCACAT
1 CTTATCACATATATACACTTTCACATTCATCACAT
78021549 AGAATCCTAA
Statistics
Matches: 209, Mismatches: 13, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
47 208 1.00
48 1 0.00
ACGTcount: A:0.28, C:0.31, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:78030291 original size:23 final size:23
Alignment explanation
Indices: 78030265--78030316 Score: 95
Period size: 23 Copynumber: 2.3 Consensus size: 23
78030255 TGGGGATGTG
*
78030265 TGGGCCCACATGGGCCTGTATTA
1 TGGGCCCACATGGGCCCGTATTA
78030288 TGGGCCCACATGGGCCCGTATTA
1 TGGGCCCACATGGGCCCGTATTA
78030311 TGGGCC
1 TGGGCC
78030317 TTGGGCACAT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.15, C:0.29, G:0.33, T:0.23
Consensus pattern (23 bp):
TGGGCCCACATGGGCCCGTATTA
Found at i:78034176 original size:23 final size:24
Alignment explanation
Indices: 78034132--78034180 Score: 73
Period size: 23 Copynumber: 2.0 Consensus size: 24
78034122 CCATCTTTAA
78034132 TTATGCTTAGTTTTTAGATGTTTCC
1 TTATGCTTAG-TTTTAGATGTTTCC
*
78034157 TTATGCTTAG-TTTAGTTGTTTCC
1 TTATGCTTAGTTTTAGATGTTTCC
78034180 T
1 T
78034181 CCATTTTCCC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 13 0.57
25 10 0.43
ACGTcount: A:0.14, C:0.12, G:0.16, T:0.57
Consensus pattern (24 bp):
TTATGCTTAGTTTTAGATGTTTCC
Found at i:78036086 original size:48 final size:48
Alignment explanation
Indices: 78036019--78036171 Score: 200
Period size: 48 Copynumber: 3.2 Consensus size: 48
78036009 CACATAGTAG
* * *
78036019 GATGCCAATGCCATATCTCAGATATGGTCTTACATGGGATCACATATC
1 GATGCCAATGCCATATCTCAGACATGGTCTTACATGGGATCATAGATC
** * * *
78036067 GATGCCAATGCCACGTCTCAGACATGGTCTTACATAGGATCGTAGATA
1 GATGCCAATGCCATATCTCAGACATGGTCTTACATGGGATCATAGATC
* *
78036115 GATGCTAATGCCATATC-CTAGACATGGACTTACATGGGATCATAGATC
1 GATGCCAATGCCATATCTC-AGACATGGTCTTACATGGGATCATAGATC
78036163 GATGCCAAT
1 GATGCCAAT
78036172 AACCCAGCTA
Statistics
Matches: 88, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
47 1 0.01
48 87 0.99
ACGTcount: A:0.30, C:0.22, G:0.21, T:0.27
Consensus pattern (48 bp):
GATGCCAATGCCATATCTCAGACATGGTCTTACATGGGATCATAGATC
Found at i:78038025 original size:40 final size:40
Alignment explanation
Indices: 78037970--78038080 Score: 134
Period size: 40 Copynumber: 2.8 Consensus size: 40
78037960 CGACTATGTT
78037970 TAGCACTTAGTGTGCGTTTCGAGATAGCTTTGGCTATATA
1 TAGCACTTAGTGTGCGTTTCGAGATAGCTTTGGCTATATA
* ** *
78038010 TAGCACTTAGTGTGCGTATTAGA-ATAATTTTGGTTATATA
1 TAGCACTTAGTGTGCGT-TTCGAGATAGCTTTGGCTATATA
* **
78038050 TGGCACTTAGTGTGCGAGATCGAGATAGCTT
1 TAGCACTTAGTGTGCG-TTTCGAGATAGCTT
78038081 CAGCTGTGAA
Statistics
Matches: 58, Mismatches: 10, Indels: 5
0.79 0.14 0.07
Matches are distributed among these distances:
40 49 0.84
41 9 0.16
ACGTcount: A:0.25, C:0.13, G:0.25, T:0.37
Consensus pattern (40 bp):
TAGCACTTAGTGTGCGTTTCGAGATAGCTTTGGCTATATA
Found at i:78055248 original size:15 final size:15
Alignment explanation
Indices: 78055230--78055260 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
78055220 AGGAGTTGCA
78055230 TCTATAGCAAATAAC
1 TCTATAGCAAATAAC
78055245 TCTATAGCAAATAAC
1 TCTATAGCAAATAAC
78055260 T
1 T
78055261 TTTCATTTGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.45, C:0.19, G:0.06, T:0.29
Consensus pattern (15 bp):
TCTATAGCAAATAAC
Found at i:78055480 original size:16 final size:16
Alignment explanation
Indices: 78055459--78055493 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
78055449 CTCAACATCG
78055459 AGTGATCAGTGAATAT
1 AGTGATCAGTGAATAT
78055475 AGTGATCAGTGAATAT
1 AGTGATCAGTGAATAT
78055491 AGT
1 AGT
78055494 TACCTTTGTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.37, C:0.06, G:0.26, T:0.31
Consensus pattern (16 bp):
AGTGATCAGTGAATAT
Found at i:78061509 original size:37 final size:37
Alignment explanation
Indices: 78061447--78061518 Score: 117
Period size: 37 Copynumber: 1.9 Consensus size: 37
78061437 AGCTCAGATG
*
78061447 AAATCTCCACACGAAGTTATAGGGTCTTACCCGGACA
1 AAATCTCCACACGAAGTCATAGGGTCTTACCCGGACA
* *
78061484 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGAAGTCATAGGGTCTTACCCGGA
78061519 ATATATTTCC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 32 1.00
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.22
Consensus pattern (37 bp):
AAATCTCCACACGAAGTCATAGGGTCTTACCCGGACA
Found at i:78061844 original size:48 final size:49
Alignment explanation
Indices: 78061665--78061899 Score: 343
Period size: 50 Copynumber: 4.8 Consensus size: 49
78061655 GCACATCGCC
*
78061665 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA-A
* *
78061715 TATATATTTCACATT-GACCATTCGGCTTTACCACATATGCATATCTCATA
1 TACATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCA-A
* *
78061765 TATATATTTCACATT-GACCATTCGGCTTTACCACATATGCATATCTC-A
1 TACATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCAA
*
78061813 TACATATTTCACATTAGCCATTCGGCATTACCACATATACATATCTC-A
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCAA
*
78061861 TACATATTTCACATTAGCCATTCTGCTTTACCACATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
78061900 TGCATGTTCA
Statistics
Matches: 175, Mismatches: 8, Indels: 6
0.93 0.04 0.03
Matches are distributed among these distances:
48 81 0.46
49 2 0.01
50 92 0.53
ACGTcount: A:0.31, C:0.26, G:0.07, T:0.36
Consensus pattern (49 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCAA
Found at i:78061861 original size:98 final size:97
Alignment explanation
Indices: 78061665--78061899 Score: 341
Period size: 98 Copynumber: 2.4 Consensus size: 97
78061655 GCACATCGCC
* *
78061665 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATT
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA-ATACATATTTCACATT
* *
78061730 GACCATTCGGCTTTACCACATATGCATATCTCATA
65 GACCATTCGGCATTACCACATATACATATCTC--A
* *
78061765 TATATATTTCACATT-GACCATTCGGCTTTACCACATATGCATATCTC-ATACATATTTCACATT
1 TACATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCAATACATATTTCACATT
78061828 -AGCCATTCGGCATTACCACATATACATATCTCA
65 GA-CCATTCGGCATTACCACATATACATATCTCA
*
78061861 TACATATTTCACATTAGCCATTCTGCTTTACCACATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
78061900 TGCATGTTCA
Statistics
Matches: 123, Mismatches: 9, Indels: 10
0.87 0.06 0.07
Matches are distributed among these distances:
96 35 0.28
97 2 0.02
98 43 0.35
99 1 0.01
100 42 0.34
ACGTcount: A:0.31, C:0.26, G:0.07, T:0.36
Consensus pattern (97 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCAATACATATTTCACATTG
ACCATTCGGCATTACCACATATACATATCTCA
Found at i:78061948 original size:47 final size:47
Alignment explanation
Indices: 78061869--78062062 Score: 271
Period size: 47 Copynumber: 4.1 Consensus size: 47
78061859 CATACATATT
* * * * *
78061869 TCACATTAGCCATTCTGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * *
78061916 CCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
*
78061963 TCATATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * **
78062010 TCACATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
78062057 TCACAT
1 TCACAT
78062063 AAAATCCTAA
Statistics
Matches: 130, Mismatches: 17, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
47 130 1.00
ACGTcount: A:0.27, C:0.29, G:0.10, T:0.34
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:78074698 original size:20 final size:20
Alignment explanation
Indices: 78074673--78074719 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
78074663 AGGGACTAAA
* *
78074673 ATGAAAAGTTGTAAAATTTG
1 ATGAAAAATTCTAAAATTTG
*
78074693 ATGAAAAATTCTAAAATTTT
1 ATGAAAAATTCTAAAATTTG
78074713 ATGAAAA
1 ATGAAAA
78074720 CATGTGCTAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.51, C:0.02, G:0.13, T:0.34
Consensus pattern (20 bp):
ATGAAAAATTCTAAAATTTG
Done.