Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 237 of 349
Found at i:78075297 original size:57 final size:57
Alignment explanation
Indices: 78075224--78075379 Score: 260
Period size: 57 Copynumber: 2.7 Consensus size: 57
78075214 ATACCTCTCA
*
78075224 AGCATACGTTGTGATTAGGGTTTAGCCTGGACTGGTAATCCTAATCGAGCCCCTCTG
1 AGCATACGTTATGATTAGGGTTTAGCCTGGACTGGTAATCCTAATCGAGCCCCTCTG
*
78075281 AGCATACATTATGATTAGGGTTTAGCCTGGACTGGTAATCCTAATCGAGCCCCTCTG
1 AGCATACGTTATGATTAGGGTTTAGCCTGGACTGGTAATCCTAATCGAGCCCCTCTG
* *
78075338 AGCATACGTTAT-ATAATGGATTTAGCCTGGACTGGTAATCCT
1 AGCATACGTTATGATTA-GGGTTTAGCCTGGACTGGTAATCCT
78075380 GTTATACGAT
Statistics
Matches: 93, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
56 3 0.03
57 90 0.97
ACGTcount: A:0.24, C:0.21, G:0.24, T:0.31
Consensus pattern (57 bp):
AGCATACGTTATGATTAGGGTTTAGCCTGGACTGGTAATCCTAATCGAGCCCCTCTG
Found at i:78093857 original size:6 final size:6
Alignment explanation
Indices: 78093846--78093876 Score: 62
Period size: 6 Copynumber: 5.2 Consensus size: 6
78093836 GTCGAAACCA
78093846 TTCCTT TTCCTT TTCCTT TTCCTT TTCCTT T
1 TTCCTT TTCCTT TTCCTT TTCCTT TTCCTT T
78093877 ACATCAATGC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (6 bp):
TTCCTT
Found at i:78102073 original size:122 final size:122
Alignment explanation
Indices: 78101856--78102100 Score: 472
Period size: 122 Copynumber: 2.0 Consensus size: 122
78101846 CCGCCACTAC
*
78101856 CCTTTCCACTCAGTCGATTCTAGTTTAACTGTTCGCTCTTCCAATCGGTTTGTTTTGCTAAGTAT
1 CCTTTCCACTCAGTCGATTCTAGTTTAACTGTTCGCTCTTCCAATCGGCTTGTTTTGCTAAGTAT
78101921 CAATTATTGTCCCCCACTTCTTCTAATCGGTCTTTGGTAGGAATAGGTATCGAATCT
66 CAATTATTGTCCCCCACTTCTTCTAATCGGTCTTTGGTAGGAATAGGTATCGAATCT
*
78101978 CCTTTCCACTCAGTCGATTCTAGTTTAAGTGTTCGCTCTTCCAATCGGCTTGTTTTGCTAAGTAT
1 CCTTTCCACTCAGTCGATTCTAGTTTAACTGTTCGCTCTTCCAATCGGCTTGTTTTGCTAAGTAT
78102043 CAATTATTGTCCCCCACTTCTTCTAATCGGTCTTTGGTAGGAATAGGTATCGAATCT
66 CAATTATTGTCCCCCACTTCTTCTAATCGGTCTTTGGTAGGAATAGGTATCGAATCT
78102100 C
1 C
78102101 AGTCTTTGGA
Statistics
Matches: 121, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
122 121 1.00
ACGTcount: A:0.20, C:0.24, G:0.17, T:0.40
Consensus pattern (122 bp):
CCTTTCCACTCAGTCGATTCTAGTTTAACTGTTCGCTCTTCCAATCGGCTTGTTTTGCTAAGTAT
CAATTATTGTCCCCCACTTCTTCTAATCGGTCTTTGGTAGGAATAGGTATCGAATCT
Found at i:78102780 original size:29 final size:27
Alignment explanation
Indices: 78102725--78102782 Score: 71
Period size: 29 Copynumber: 2.1 Consensus size: 27
78102715 ATGTAAATCC
* *
78102725 GATTTGGGCCTAGGGCCATATGAATGT
1 GATTTGGGCCTAGGGCCACATAAATGT
*
78102752 GATTTGGGCCTAATGGGCTACATAAATGT
1 GATTTGGGCCT-A-GGGCCACATAAATGT
78102781 GA
1 GA
78102783 ATGGGCCATA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
27 11 0.42
28 1 0.04
29 14 0.54
ACGTcount: A:0.26, C:0.14, G:0.31, T:0.29
Consensus pattern (27 bp):
GATTTGGGCCTAGGGCCACATAAATGT
Found at i:78111201 original size:17 final size:16
Alignment explanation
Indices: 78111163--78111194 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
78111153 GTTGTAACGT
*
78111163 CCCAAAAATCTTGAAA
1 CCCAAAAATCCTGAAA
78111179 CCCAAAAATCCTGAAA
1 CCCAAAAATCCTGAAA
78111195 TCTCAAATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.50, C:0.28, G:0.06, T:0.16
Consensus pattern (16 bp):
CCCAAAAATCCTGAAA
Found at i:78112442 original size:8 final size:8
Alignment explanation
Indices: 78112429--78112490 Score: 52
Period size: 8 Copynumber: 7.8 Consensus size: 8
78112419 TCGGCAAATC
78112429 CCGAAAAG
1 CCGAAAAG
*
78112437 CCGAAATG
1 CCGAAAAG
*
78112445 CCAAAAAG
1 CCGAAAAG
*
78112453 CCAAAAAG
1 CCGAAAAG
* *
78112461 TCTAAAAG
1 CCGAAAAG
*
78112469 TCGAAAAG
1 CCGAAAAG
*
78112477 CTGAAAAG
1 CCGAAAAG
*
78112485 CTGAAA
1 CCGAAA
78112491 GTTTGGCTAC
Statistics
Matches: 46, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
8 46 1.00
ACGTcount: A:0.52, C:0.19, G:0.19, T:0.10
Consensus pattern (8 bp):
CCGAAAAG
Found at i:78112799 original size:28 final size:28
Alignment explanation
Indices: 78112723--78112814 Score: 96
Period size: 28 Copynumber: 3.2 Consensus size: 28
78112713 TTGGCCTAGT
* * *
78112723 GCCATATGAATGTGATTTGGGCCTAATAG
1 GCCATATGAAAGAGA-TTGGGCCTAATGG
* * *
78112752 GCCATAT-AAATATGAATGGGCTTAATGG
1 GCCATATGAAAGA-GATTGGGCCTAATGG
*
78112780 GCCATATGAAAGAGATTGGGCCTAGTGG
1 GCCATATGAAAGAGATTGGGCCTAATGG
78112808 GCCATAT
1 GCCATAT
78112815 ATAGGTATGT
Statistics
Matches: 51, Mismatches: 10, Indels: 5
0.77 0.15 0.08
Matches are distributed among these distances:
28 38 0.75
29 13 0.25
ACGTcount: A:0.30, C:0.14, G:0.28, T:0.27
Consensus pattern (28 bp):
GCCATATGAAAGAGATTGGGCCTAATGG
Found at i:78118566 original size:46 final size:46
Alignment explanation
Indices: 78118420--78118593 Score: 217
Period size: 46 Copynumber: 3.7 Consensus size: 46
78118410 TTATTTGTGT
* *
78118420 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATTATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-GATGAGA
* * * * * *
78118466 GCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCATTGAGACGATA
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGATGAGA
*
78118514 GCTAGTGTATGACATGTCTGGGACATGCATCGGCCTCGAGATGTA-A
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATG-AGA
78118560 GCTAGTGTAAGACATGTCTGGGACATGCATCGGC
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGC
78118594 TATAAAATGT
Statistics
Matches: 109, Mismatches: 15, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
46 58 0.53
47 29 0.27
48 21 0.19
49 1 0.01
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.24
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGAGA
Found at i:78122180 original size:40 final size:40
Alignment explanation
Indices: 78122080--78122251 Score: 222
Period size: 40 Copynumber: 4.3 Consensus size: 40
78122070 GCTCCTCGTT
* * *
78122080 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
*
78122120 C-AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * *
78122159 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * * *
78122199 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGG-ATTTAGTAACTCGCA
78122239 CAAATGCCTTCGG
1 CAAATGCCTTCGG
78122252 ATCTTAGTCC
Statistics
Matches: 119, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
39 35 0.29
40 80 0.67
41 4 0.03
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:78124087 original size:10 final size:9
Alignment explanation
Indices: 78124068--78124107 Score: 53
Period size: 9 Copynumber: 4.3 Consensus size: 9
78124058 GTTAAGAATT
78124068 GGCCAAATG
1 GGCCAAATG
78124077 GGCCAAAATG
1 GGCC-AAATG
*
78124087 GGCTAAATG
1 GGCCAAATG
*
78124096 GGCCTAATG
1 GGCCAAATG
78124105 GGC
1 GGC
78124108 TGTTGGGCCC
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
9 19 0.70
10 8 0.30
ACGTcount: A:0.30, C:0.20, G:0.35, T:0.15
Consensus pattern (9 bp):
GGCCAAATG
Found at i:78124096 original size:19 final size:18
Alignment explanation
Indices: 78124072--78124108 Score: 56
Period size: 19 Copynumber: 2.0 Consensus size: 18
78124062 AGAATTGGCC
78124072 AAATGGGCCAAAATGGGCT
1 AAATGGGCC-AAATGGGCT
*
78124091 AAATGGGCCTAATGGGCT
1 AAATGGGCCAAATGGGCT
78124109 GTTGGGCCCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 8 0.47
19 9 0.53
ACGTcount: A:0.32, C:0.16, G:0.32, T:0.19
Consensus pattern (18 bp):
AAATGGGCCAAATGGGCT
Found at i:78124222 original size:29 final size:28
Alignment explanation
Indices: 78124189--78124266 Score: 88
Period size: 29 Copynumber: 2.8 Consensus size: 28
78124179 ATAATATGAT
*
78124189 TTGGGCCTAATGGGCCATATGAGTGAGA-A
1 TTGGGCCTAATGGGCCATATGAAT-A-ATA
*
78124218 TTGGGCC-AGATGGGCCATTTGAATAATA
1 TTGGGCCTA-ATGGGCCATATGAATAATA
*
78124246 TTGGGCCTAGTGGGCCATATG
1 TTGGGCCTAATGGGCCATATG
78124267 CATGTATGTA
Statistics
Matches: 42, Mismatches: 4, Indels: 7
0.79 0.08 0.13
Matches are distributed among these distances:
27 1 0.02
28 20 0.48
29 21 0.50
ACGTcount: A:0.24, C:0.15, G:0.33, T:0.27
Consensus pattern (28 bp):
TTGGGCCTAATGGGCCATATGAATAATA
Found at i:78128459 original size:8 final size:8
Alignment explanation
Indices: 78128409--78128483 Score: 57
Period size: 8 Copynumber: 9.6 Consensus size: 8
78128399 ATGAATCGAC
*
78128409 AAAAGCTG
1 AAAAGCCG
* *
78128417 AAATGCCA
1 AAAAGCCG
78128425 AAAAGCCG
1 AAAAGCCG
78128433 -AAAGCC-
1 AAAAGCCG
*
78128439 AAAATGTCG
1 AAAA-GCCG
78128448 AAAAGCCG
1 AAAAGCCG
**
78128456 AAAAGTTG
1 AAAAGCCG
*
78128464 AAATGCCG
1 AAAAGCCG
78128472 AAAAGCC-
1 AAAAGCCG
78128479 AAAAG
1 AAAAG
78128484 TTGGGCTACG
Statistics
Matches: 51, Mismatches: 13, Indels: 7
0.72 0.18 0.10
Matches are distributed among these distances:
7 14 0.27
8 33 0.65
9 4 0.08
ACGTcount: A:0.51, C:0.19, G:0.21, T:0.09
Consensus pattern (8 bp):
AAAAGCCG
Found at i:78128486 original size:23 final size:23
Alignment explanation
Indices: 78128408--78128483 Score: 89
Period size: 23 Copynumber: 3.3 Consensus size: 23
78128398 AATGAATCGA
*
78128408 CAAAAGCTGAAATGCCAAAAAGC
1 CAAAAGCTGAAATGCCGAAAAGC
* ** *
78128431 CGAAAGCCAAAATGTCGAAAAGC
1 CAAAAGCTGAAATGCCGAAAAGC
*
78128454 CGAAAAGTTGAAATGCCGAAAAGC
1 C-AAAAGCTGAAATGCCGAAAAGC
78128478 CAAAAG
1 CAAAAG
78128484 TTGGGCTACG
Statistics
Matches: 42, Mismatches: 10, Indels: 2
0.78 0.19 0.04
Matches are distributed among these distances:
23 24 0.57
24 18 0.43
ACGTcount: A:0.50, C:0.20, G:0.21, T:0.09
Consensus pattern (23 bp):
CAAAAGCTGAAATGCCGAAAAGC
Found at i:78128750 original size:29 final size:29
Alignment explanation
Indices: 78128687--78128761 Score: 80
Period size: 29 Copynumber: 2.6 Consensus size: 29
78128677 TAATATGATT
* * *
78128687 TGGGCCTAATGGGCCATATGAATGAGAAT
1 TGGGCCTAATGGGCCATAAGAATCAGAAC
*
78128716 TAGGCCTAATGGGCCATAAGAA-CATGAAC
1 TGGGCCTAATGGGCCATAAGAATCA-GAAC
* *
78128745 TGGGCCAAATGGCCCAT
1 TGGGCCTAATGGGCCAT
78128762 TTAAATAAGA
Statistics
Matches: 38, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
28 1 0.03
29 37 0.97
ACGTcount: A:0.32, C:0.20, G:0.28, T:0.20
Consensus pattern (29 bp):
TGGGCCTAATGGGCCATAAGAATCAGAAC
Found at i:78135460 original size:13 final size:13
Alignment explanation
Indices: 78135442--78135466 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
78135432 GTAAGTGATT
78135442 TTGATGATTTTTC
1 TTGATGATTTTTC
78135455 TTGATGATTTTT
1 TTGATGATTTTT
78135467 GCATTTTTAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.04, G:0.16, T:0.64
Consensus pattern (13 bp):
TTGATGATTTTTC
Found at i:78141381 original size:23 final size:21
Alignment explanation
Indices: 78141342--78141388 Score: 51
Period size: 23 Copynumber: 2.1 Consensus size: 21
78141332 AGTTTGCATG
78141342 TAAATGATTAACAACATTAACCA
1 TAAATGATTAACAACA-TAA-CA
*
78141365 TAAATTATTATAC-ACATAACA
1 TAAATGATTA-ACAACATAACA
78141386 TAA
1 TAA
78141389 TAATATTTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
21 5 0.23
22 3 0.14
23 12 0.55
24 2 0.09
ACGTcount: A:0.53, C:0.15, G:0.02, T:0.30
Consensus pattern (21 bp):
TAAATGATTAACAACATAACA
Found at i:78141833 original size:48 final size:47
Alignment explanation
Indices: 78141711--78141915 Score: 177
Period size: 48 Copynumber: 4.4 Consensus size: 47
78141701 TATCCCGAAT
* * * * *
78141711 ATGGTCTTACATGGAATCATATATTGATGCCAATGCCACGTCCCAGAC
1 ATGGTCTTACATGGGATCACATATCGATGCCAATGCCATG-CCTAGAC
** ** * * *
78141759 ATGGTCTTATGTGGGATCGTAGATCGATGCTAATGTCATGTCCTAGAC
1 ATGGTCTTACATGGGATCACATATCGATGCCAATGCCATG-CCTAGAC
*
78141807 ATGGTCTTACATGGGATCACATATCGATGCCGAT---A-GCCTAG-C
1 ATGGTCTTACATGGGATCACATATCGATGCCAATGCCATGCCTAGAC
* ** * *
78141849 TATGGTCTTACACGAAATTACATATCGATGCCAATGCCATGCCTCATAC
1 -ATGGTCTTACATGGGATCACATATCGATGCCAATGCCATGCCT-AGAC
78141898 ATGGTCTTACATGGGATC
1 ATGGTCTTACATGGGATC
78141916 GTACATAACC
Statistics
Matches: 123, Mismatches: 27, Indels: 14
0.75 0.16 0.09
Matches are distributed among these distances:
42 1 0.01
43 34 0.28
44 1 0.01
45 1 0.01
46 1 0.01
47 4 0.03
48 80 0.65
49 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.29
Consensus pattern (47 bp):
ATGGTCTTACATGGGATCACATATCGATGCCAATGCCATGCCTAGAC
Found at i:78154554 original size:30 final size:30
Alignment explanation
Indices: 78154487--78154555 Score: 104
Period size: 30 Copynumber: 2.3 Consensus size: 30
78154477 CACACGGGTA
*
78154487 GACACACAGGCATGTGTCTAAGCCGTGTGT
1 GACACACGGGCATGTGTCTAAGCCGTGTGT
*
78154517 GACACACGGGCGTGTGTCT-AGACCGTGTGT
1 GACACACGGGCATGTGTCTAAG-CCGTGTGT
78154547 GACACACGG
1 GACACACGG
78154556 TCAGCCCCAT
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
29 2 0.06
30 34 0.94
ACGTcount: A:0.22, C:0.25, G:0.33, T:0.20
Consensus pattern (30 bp):
GACACACGGGCATGTGTCTAAGCCGTGTGT
Found at i:78156806 original size:8 final size:8
Alignment explanation
Indices: 78156788--78156873 Score: 69
Period size: 8 Copynumber: 11.6 Consensus size: 8
78156778 AAAATATAGG
78156788 ACCCT-AA
1 ACCCTAAA
*
78156795 ACCATAAA
1 ACCCTAAA
*
78156803 ACCAT-AA
1 ACCCTAAA
78156810 ACCCT-AA
1 ACCCTAAA
*
78156817 A-CCTTAA
1 ACCCTAAA
78156824 ACCCTAAA
1 ACCCTAAA
78156832 ACCCT-AA
1 ACCCTAAA
*
78156839 A-CCTTAA
1 ACCCTAAA
*
78156846 ATCCTAAA
1 ACCCTAAA
*
78156854 ATCCTAAA
1 ACCCTAAA
78156862 ACCCT-AA
1 ACCCTAAA
78156869 ACCCT
1 ACCCT
78156874 TGCTCTGTTT
Statistics
Matches: 69, Mismatches: 5, Indels: 10
0.82 0.06 0.12
Matches are distributed among these distances:
6 6 0.09
7 29 0.42
8 34 0.49
ACGTcount: A:0.47, C:0.35, G:0.00, T:0.19
Consensus pattern (8 bp):
ACCCTAAA
Found at i:78156811 original size:7 final size:7
Alignment explanation
Indices: 78156788--78156873 Score: 82
Period size: 7 Copynumber: 11.7 Consensus size: 7
78156778 AAAATATAGG
78156788 ACCCTAA
1 ACCCTAA
*
78156795 ACCATAAA
1 ACCCT-AA
*
78156803 ACCATAA
1 ACCCTAA
78156810 ACCCTAA
1 ACCCTAA
*
78156817 ACCTTAA
1 ACCCTAA
78156824 ACCCTAAA
1 ACCCT-AA
78156832 ACCCTAA
1 ACCCTAA
*
78156839 ACCTTAA
1 ACCCTAA
*
78156846 ATCCTAAA
1 ACCCT-AA
*
78156854 ATCCTAAA
1 ACCCT-AA
78156862 ACCCTAA
1 ACCCTAA
78156869 ACCCT
1 ACCCT
78156874 TGCTCTGTTT
Statistics
Matches: 68, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
7 40 0.59
8 28 0.41
ACGTcount: A:0.47, C:0.35, G:0.00, T:0.19
Consensus pattern (7 bp):
ACCCTAA
Found at i:78156813 original size:22 final size:22
Alignment explanation
Indices: 78156788--78156861 Score: 80
Period size: 22 Copynumber: 3.4 Consensus size: 22
78156778 AAAATATAGG
78156788 ACCCTAAACCATAAAACCAT-AA
1 ACCCTAAACC-TAAAACCATAAA
* *
78156810 ACCCTAAACCTTAAACCCTAAA
1 ACCCTAAACCTAAAACCATAAA
*
78156832 ACCCTAAACCTTAAATCC-TAAA
1 ACCCTAAACC-TAAAACCATAAA
*
78156854 ATCCTAAA
1 ACCCTAAA
78156862 ACCCTAAACC
Statistics
Matches: 45, Mismatches: 5, Indels: 4
0.83 0.09 0.07
Matches are distributed among these distances:
21 7 0.16
22 33 0.73
23 5 0.11
ACGTcount: A:0.49, C:0.32, G:0.00, T:0.19
Consensus pattern (22 bp):
ACCCTAAACCTAAAACCATAAA
Found at i:78160867 original size:40 final size:40
Alignment explanation
Indices: 78160822--78161218 Score: 641
Period size: 40 Copynumber: 9.9 Consensus size: 40
78160812 CGAATACACG
* * *
78160822 TCACCAGCATGATTGCTCTTCGGGACCTAGCCCGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATA
* * * ** *
78160862 ACACCAGCACGAATGCTCTTCGGGGTTTAGCACGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATA
* * * *
78160902 TCACTAGCACGAATGCTCTTCGGAACTTAGCCGGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATA
78160942 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATA
**
78160982 TCACTAGCATGAATGCTCTTCTAGACTTAGCCCGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATA
*
78161022 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATA
78161062 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATA
78161102 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATA
*
78161142 TCACTAGCATGAATGCTCTTTGGGACTTAGCCCGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATA
78161182 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGAT
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGAT
78161219 CATTGTCGAG
Statistics
Matches: 330, Mismatches: 27, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 330 1.00
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.26
Consensus pattern (40 bp):
TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATA
Found at i:78161347 original size:38 final size:38
Alignment explanation
Indices: 78161276--78161350 Score: 98
Period size: 38 Copynumber: 2.0 Consensus size: 38
78161266 GAATTTTAAT
* *
78161276 CCGGACATAATCTCTGTACATAGCCATCTGGTCTTTAC
1 CCGGACATAATCTCTGTACATAGCCAGCGGGTCTTTAC
* *
78161314 CCGGACATAATCTCT-TCATATAGTCAGCGGGTCTTTA
1 CCGGACATAATCTCTGT-ACATAGCCAGCGGGTCTTTA
78161351 AACTCGGATT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
37 1 0.03
38 31 0.97
ACGTcount: A:0.24, C:0.27, G:0.17, T:0.32
Consensus pattern (38 bp):
CCGGACATAATCTCTGTACATAGCCAGCGGGTCTTTAC
Found at i:78163839 original size:47 final size:47
Alignment explanation
Indices: 78163797--78164121 Score: 474
Period size: 47 Copynumber: 6.9 Consensus size: 47
78163787 TATACACTTC
*
78163797 CACATCCATCACATTGGCCATTCGGCCTTATCACATATATACACT-TT
1 CACATTCATCACATTGGCCATTCGGCCTTATCACATATATACA-TGTT
* * *
78163844 CACATTCATCACATTGGCCATTCGGGCTTATCTCATATATGCATGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCACATATATACATGTT
* *
78163891 CACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCACATATATACATGTT
* * *
78163938 CACATTCATCACATTCGCCATTCGGCCTTATCACACATACACATGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCACATATATACATGTT
* *
78163985 CACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCACATATATACATGTT
*
78164032 CACATTCATCACATTGGCCATTCGGCCTTATCACGCATATATATACT-TT
1 CACATTCATCACATTGGCCATTCGGCCTTATCA--CATATATACA-TGTT
* *
78164081 CACATTCATCACATTGGCCACTCGGCCCTATCACATATATA
1 CACATTCATCACATTGGCCATTCGGCCTTATCACATATATA
78164122 TACTTGTACA
Statistics
Matches: 258, Mismatches: 16, Indels: 8
0.91 0.06 0.03
Matches are distributed among these distances:
46 1 0.00
47 216 0.84
49 40 0.16
50 1 0.00
ACGTcount: A:0.27, C:0.31, G:0.10, T:0.31
Consensus pattern (47 bp):
CACATTCATCACATTGGCCATTCGGCCTTATCACATATATACATGTT
Found at i:78164986 original size:45 final size:45
Alignment explanation
Indices: 78164935--78165024 Score: 180
Period size: 45 Copynumber: 2.0 Consensus size: 45
78164925 GTCACATCAT
78164935 ATCTTATTAAATCATCTCATTATGTCCTATTATGACTGAATTTAC
1 ATCTTATTAAATCATCTCATTATGTCCTATTATGACTGAATTTAC
78164980 ATCTTATTAAATCATCTCATTATGTCCTATTATGACTGAATTTAC
1 ATCTTATTAAATCATCTCATTATGTCCTATTATGACTGAATTTAC
78165025 TCAACGTTTA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.31, C:0.18, G:0.07, T:0.44
Consensus pattern (45 bp):
ATCTTATTAAATCATCTCATTATGTCCTATTATGACTGAATTTAC
Found at i:78167644 original size:32 final size:32
Alignment explanation
Indices: 78167603--78167666 Score: 119
Period size: 32 Copynumber: 2.0 Consensus size: 32
78167593 ATATATCATA
*
78167603 TTAATCCCGTTGAGTTTCTCGAAAGTCTCGAT
1 TTAATCCCGTTGAGTTTCTCAAAAGTCTCGAT
78167635 TTAATCCCGTTGAGTTTCTCAAAAGTCTCGAT
1 TTAATCCCGTTGAGTTTCTCAAAAGTCTCGAT
78167667 GGATTATCCA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.23, C:0.22, G:0.17, T:0.38
Consensus pattern (32 bp):
TTAATCCCGTTGAGTTTCTCAAAAGTCTCGAT
Found at i:78170662 original size:44 final size:41
Alignment explanation
Indices: 78170590--78170687 Score: 126
Period size: 44 Copynumber: 2.3 Consensus size: 41
78170580 ATATGTGTTA
* *
78170590 TCGTGTAAGACCATGTCTGGGACGTTGGCATTA-ACTTATGATT
1 TCGTGTAAGACCATGTCTGAGACATTGGCA-TAGA-TT-TGATT
78170633 TACGTGTAAGACCATGTCTGAGACATTGGCATAGTATTTGATT
1 T-CGTGTAAGACCATGTCTGAGACATTGGCATAG-ATTTGATT
78170676 TCGTGTAAGACC
1 TCGTGTAAGACC
78170688 TGTATAGGAC
Statistics
Matches: 50, Mismatches: 2, Indels: 7
0.85 0.03 0.12
Matches are distributed among these distances:
42 11 0.22
43 9 0.18
44 29 0.58
45 1 0.02
ACGTcount: A:0.26, C:0.16, G:0.24, T:0.34
Consensus pattern (41 bp):
TCGTGTAAGACCATGTCTGAGACATTGGCATAGATTTGATT
Found at i:78173547 original size:93 final size:93
Alignment explanation
Indices: 78173435--78173605 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
78173425 GCCCCTAAGT
* * *
78173435 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
78173500 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
*
78173528 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
78173593 CGAGTTCGGATGC
66 CGAGTTCGGATGC
78173606 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:78173602 original size:46 final size:46
Alignment explanation
Indices: 78173430--78173602 Score: 201
Period size: 46 Copynumber: 3.7 Consensus size: 46
78173420 AACCCGCCCC
* * *
78173430 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
* *
78173476 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
78173524 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
*
78173569 TAAGTGAACTCAGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
78173603 TGCTCAACCA
Statistics
Matches: 106, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 60 0.57
47 29 0.27
48 2 0.02
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:78177010 original size:125 final size:125
Alignment explanation
Indices: 78176804--78177053 Score: 455
Period size: 125 Copynumber: 2.0 Consensus size: 125
78176794 TGACGTCATC
* *
78176804 AAAACAAATTTAACCACACGGCCAGGCCACACACCCGTGTGCTAGGCCGTGTCCTCCACACGGTT
1 AAAACAAATTTAACCACACAGCCAGGCCACACACCCGTGCGCTAGGCCGTGTCCTCCACACGGTT
*
78176869 GAGACACATGGCCGTGTCTCTGCCCGTGTGACTAGTACTTAGGCTATTTTCCAAGCCTTT
66 GAGACACATGGACGTGTCTCTGCCCGTGTGACTAGTACTTAGGCTATTTTCCAAGCCTTT
*
78176929 AAAACAAATTTAACCACACAGTCAGGCCACACACCCGTGCGCTAGGCCGTGTCCTCCACACGGTT
1 AAAACAAATTTAACCACACAGCCAGGCCACACACCCGTGCGCTAGGCCGTGTCCTCCACACGGTT
*
78176994 GAGACACATGGACGTGTCTCTGCCCGTGTGACTAGTACTTAGGCTATTTTCCCAGCCTTT
66 GAGACACATGGACGTGTCTCTGCCCGTGTGACTAGTACTTAGGCTATTTTCCAAGCCTTT
78177054 TGTTACCATT
Statistics
Matches: 120, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
125 120 1.00
ACGTcount: A:0.24, C:0.31, G:0.21, T:0.24
Consensus pattern (125 bp):
AAAACAAATTTAACCACACAGCCAGGCCACACACCCGTGCGCTAGGCCGTGTCCTCCACACGGTT
GAGACACATGGACGTGTCTCTGCCCGTGTGACTAGTACTTAGGCTATTTTCCAAGCCTTT
Found at i:78182855 original size:26 final size:26
Alignment explanation
Indices: 78182819--78182891 Score: 110
Period size: 26 Copynumber: 2.8 Consensus size: 26
78182809 GGCTTGCGAG
* *
78182819 GCACAAGAGCACCAATGCTCCTTCCT
1 GCACTAGAGCACCAACGCTCCTTCCT
78182845 GCACTAGAGCACCAACGCTCCTTCCT
1 GCACTAGAGCACCAACGCTCCTTCCT
*
78182871 GCACTAGAGCACTAAACGCTC
1 GCACTAGAGCAC-CAACGCTC
78182892 TCAAAGCACC
Statistics
Matches: 43, Mismatches: 3, Indels: 1
0.91 0.06 0.02
Matches are distributed among these distances:
26 36 0.84
27 7 0.16
ACGTcount: A:0.27, C:0.38, G:0.16, T:0.18
Consensus pattern (26 bp):
GCACTAGAGCACCAACGCTCCTTCCT
Found at i:78183633 original size:20 final size:20
Alignment explanation
Indices: 78183580--78183641 Score: 72
Period size: 20 Copynumber: 3.0 Consensus size: 20
78183570 ATACATATAT
78183580 TATATAATAACTATAAATTTAA
1 TATATAATAA-TA-AAATTTAA
78183602 -ATATAATAATAAAATTTAA
1 TATATAATAATAAAATTTAA
* * *
78183621 TATATGATCATAAACTTTAA
1 TATATAATAATAAAATTTAA
78183641 T
1 T
78183642 TATTATTTAT
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
19 8 0.22
20 19 0.53
21 9 0.25
ACGTcount: A:0.53, C:0.05, G:0.02, T:0.40
Consensus pattern (20 bp):
TATATAATAATAAAATTTAA
Found at i:78198005 original size:16 final size:16
Alignment explanation
Indices: 78197980--78198012 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
78197970 CTGTAACGCC
*
78197980 CCAAATATCCCGAAAT
1 CCAAAAATCCCGAAAT
78197996 CCAAAAATCCCGAAAT
1 CCAAAAATCCCGAAAT
78198012 C
1 C
78198013 TTGAATTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.45, C:0.33, G:0.06, T:0.15
Consensus pattern (16 bp):
CCAAAAATCCCGAAAT
Found at i:78201372 original size:30 final size:31
Alignment explanation
Indices: 78201317--78201376 Score: 86
Period size: 31 Copynumber: 2.0 Consensus size: 31
78201307 TTAACAACCC
* *
78201317 AGTGACTTGAATAAAAACTTTTGAATAGTTT
1 AGTGACTTAAATAAAAACATTTGAATAGTTT
*
78201348 AGTGGCTTAAATAAAAA-ATTTGAATAGTT
1 AGTGACTTAAATAAAAACATTTGAATAGTT
78201377 CAATAACCAT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 11 0.42
31 15 0.58
ACGTcount: A:0.42, C:0.05, G:0.17, T:0.37
Consensus pattern (31 bp):
AGTGACTTAAATAAAAACATTTGAATAGTTT
Found at i:78205748 original size:33 final size:33
Alignment explanation
Indices: 78205711--78205773 Score: 90
Period size: 33 Copynumber: 1.9 Consensus size: 33
78205701 ATTTCAATTA
* * * *
78205711 GGATTTAGCCTGGATTGGTAATCCTAATTAACT
1 GGATTTAGCCTAGACTAGTAATCCAAATTAACT
78205744 GGATTTAGCCTAGACTAGTAATCCAAATTA
1 GGATTTAGCCTAGACTAGTAATCCAAATTA
78205774 GACTCTGTAG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
33 26 1.00
ACGTcount: A:0.32, C:0.16, G:0.19, T:0.33
Consensus pattern (33 bp):
GGATTTAGCCTAGACTAGTAATCCAAATTAACT
Found at i:78223998 original size:33 final size:32
Alignment explanation
Indices: 78223947--78224010 Score: 83
Period size: 33 Copynumber: 2.0 Consensus size: 32
78223937 ATGAAGACAC
* *
78223947 CAAATACAGATATTGTGGCTAGGCCACCAGAA
1 CAAATACAGATATTGTGGCGAAGCCACCAGAA
* *
78223979 CAAATATATATATATGTGGCGAAGCCACCAGA
1 CAAATACAGATAT-TGTGGCGAAGCCACCAGA
78224011 TTCCAGCGAG
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
32 11 0.41
33 16 0.59
ACGTcount: A:0.39, C:0.20, G:0.20, T:0.20
Consensus pattern (32 bp):
CAAATACAGATATTGTGGCGAAGCCACCAGAA
Found at i:78224761 original size:27 final size:27
Alignment explanation
Indices: 78224731--78224784 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
78224721 ATCAGTAGTC
* *
78224731 CTACCCTACAGGGGTATTTCTGTAATT
1 CTACCCTACAAGGGTATTTCTATAATT
*
78224758 CTACCTTACAAGGGTATTTCTATAATT
1 CTACCCTACAAGGGTATTTCTATAATT
78224785 TTGTAAATCG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.26, C:0.20, G:0.15, T:0.39
Consensus pattern (27 bp):
CTACCCTACAAGGGTATTTCTATAATT
Found at i:78224798 original size:27 final size:27
Alignment explanation
Indices: 78224768--78224866 Score: 76
Period size: 27 Copynumber: 3.7 Consensus size: 27
78224758 CTACCTTACA
*
78224768 AGGGTATTTCTATAATTTTGTAAATCG
1 AGGGTATTTCGATAATTTTGTAAATCG
*** * *
78224795 AGGGTAAAACGGTAATTCTGTAAATCG
1 AGGGTATTTCGATAATTTTGTAAATCG
* ** *
78224822 AGGGTACTTT-GGTAATTTTACAAGTCG
1 AGGGTA-TTTCGATAATTTTGTAAATCG
78224849 AGGGTATTTC-AGTAATTT
1 AGGGTATTTCGA-TAATTT
78224867 CACAAATTGG
Statistics
Matches: 55, Mismatches: 14, Indels: 6
0.73 0.19 0.08
Matches are distributed among these distances:
26 3 0.05
27 52 0.95
ACGTcount: A:0.30, C:0.09, G:0.23, T:0.37
Consensus pattern (27 bp):
AGGGTATTTCGATAATTTTGTAAATCG
Found at i:78224912 original size:27 final size:27
Alignment explanation
Indices: 78224823--78224925 Score: 100
Period size: 27 Copynumber: 3.8 Consensus size: 27
78224813 TGTAAATCGA
* * *
78224823 GGGTACTTTGGTAATTTTAC-AAGTCG
1 GGGTATTTTGGTAATTTTACAAACTAG
** * * *
78224849 AGGGTATTTCAGTAATTTCACAAATTGG
1 -GGGTATTTTGGTAATTTTACAAACTAG
*
78224877 GGGTATTTTGGTAGTTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
*
78224904 GGGTATTTTGGTAATTCTACAA
1 GGGTATTTTGGTAATTTTACAA
78224926 CTTATCCACT
Statistics
Matches: 61, Mismatches: 14, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
27 57 0.93
28 4 0.07
ACGTcount: A:0.27, C:0.10, G:0.24, T:0.39
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACTAG
Found at i:78231111 original size:40 final size:40
Alignment explanation
Indices: 78231067--78231218 Score: 286
Period size: 40 Copynumber: 3.8 Consensus size: 40
78231057 TATTACCACA
* *
78231067 AGCACAATTGCCTTCGGGTCTTAGCCCGGATCAAATCACT
1 AGCACAAATGCCTTCGGGACTTAGCCCGGATCAAATCACT
78231107 AGCACAAATGCCTTCGGGACTTAGCCCGGATCAAATCACT
1 AGCACAAATGCCTTCGGGACTTAGCCCGGATCAAATCACT
78231147 AGCACAAATGCCTTCGGGACTTAGCCCGGATCAAATCACT
1 AGCACAAATGCCTTCGGGACTTAGCCCGGATCAAATCACT
78231187 AGCACAAATGCCTTCGGGACTTAGCCCGGATC
1 AGCACAAATGCCTTCGGGACTTAGCCCGGATC
78231219 TCATTCAAAT
Statistics
Matches: 110, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 110 1.00
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (40 bp):
AGCACAAATGCCTTCGGGACTTAGCCCGGATCAAATCACT
Found at i:78234376 original size:67 final size:67
Alignment explanation
Indices: 78234255--78234408 Score: 256
Period size: 67 Copynumber: 2.3 Consensus size: 67
78234245 CACCACAGAA
* *
78234255 ATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGATATAGATATTGTGGCTAGGCCACC
1 ATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGATACAGATATTGTGGCGAGGCCACC
78234320 AG
66 AG
* *
78234322 ATTGCAGCGAGGCTGCCAGATATTGTGATGAAGTCACCAGA-ACAGATATATGTGGCGAGGTCAC
1 ATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGATACAGATAT-TGTGGCGAGGCCAC
78234386 CAG
65 CAG
78234389 ATTGCAGCGAGGCTGCCAGA
1 ATTGCAGCGAGGCTGCCAGA
78234409 ACGCTTCCTC
Statistics
Matches: 82, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
66 7 0.09
67 75 0.91
ACGTcount: A:0.29, C:0.21, G:0.30, T:0.21
Consensus pattern (67 bp):
ATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGATACAGATATTGTGGCGAGGCCACC
AG
Found at i:78234479 original size:55 final size:55
Alignment explanation
Indices: 78234408--78234517 Score: 211
Period size: 55 Copynumber: 2.0 Consensus size: 55
78234398 AGGCTGCCAG
78234408 AACGCTTCCTCCATCAATATAAACCCATGTCCCATGCAACAGAAATAATATGTCA
1 AACGCTTCCTCCATCAATATAAACCCATGTCCCATGCAACAGAAATAATATGTCA
*
78234463 AACGTTTCCTCCATCAATATAAACCCATGTCCCATGCAACAGAAATAATATGTCA
1 AACGCTTCCTCCATCAATATAAACCCATGTCCCATGCAACAGAAATAATATGTCA
78234518 TGGCATACGT
Statistics
Matches: 54, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
55 54 1.00
ACGTcount: A:0.38, C:0.28, G:0.09, T:0.25
Consensus pattern (55 bp):
AACGCTTCCTCCATCAATATAAACCCATGTCCCATGCAACAGAAATAATATGTCA
Found at i:78234716 original size:8 final size:8
Alignment explanation
Indices: 78234699--78234746 Score: 60
Period size: 8 Copynumber: 6.0 Consensus size: 8
78234689 TACCAAAGTG
*
78234699 GGCCCGTT
1 GGCCCATT
78234707 GGCCCATT
1 GGCCCATT
*
78234715 GGCCCGTT
1 GGCCCATT
*
78234723 AGCCCATT
1 GGCCCATT
78234731 GGCCCATT
1 GGCCCATT
*
78234739 GACCCATT
1 GGCCCATT
78234747 TTTGGCTCAT
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
8 34 1.00
ACGTcount: A:0.12, C:0.38, G:0.25, T:0.25
Consensus pattern (8 bp):
GGCCCATT
Found at i:78234720 original size:16 final size:16
Alignment explanation
Indices: 78234699--78234746 Score: 69
Period size: 16 Copynumber: 3.0 Consensus size: 16
78234689 TACCAAAGTG
78234699 GGCCCGTTGGCCCATT
1 GGCCCGTTGGCCCATT
*
78234715 GGCCCGTTAGCCCATT
1 GGCCCGTTGGCCCATT
* *
78234731 GGCCCATTGACCCATT
1 GGCCCGTTGGCCCATT
78234747 TTTGGCTCAT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 28 1.00
ACGTcount: A:0.12, C:0.38, G:0.25, T:0.25
Consensus pattern (16 bp):
GGCCCGTTGGCCCATT
Found at i:78235194 original size:27 final size:27
Alignment explanation
Indices: 78235164--78235321 Score: 104
Period size: 27 Copynumber: 5.9 Consensus size: 27
78235154 CTACCTTACA
* **
78235164 AGGGTATTTCTGTAATTTTGTAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
*** * ** *
78235191 AGGGTAAAACGGTAATTCTGTAAATTG
1 AGGGTATTTCGGTAATTTTACAAATCG
*
78235218 AGGGTACTTT-GGTAATTTTACAAGTCG
1 AGGGTA-TTTCGGTAATTTTACAAATCG
* * * *
78235245 ATGGTATTTCAGTAATTTCACAAATCA
1 AGGGTATTTCGGTAATTTTACAAATCG
* *
78235272 AGGGTATTTTGGTAATTTTACAAA-CT
1 AGGGTATTTCGGTAATTTTACAAATCG
* * *
78235298 AGGGATATTTTGCTAATTCTACAA
1 AGGG-TATTTCGGTAATTTTACAA
78235322 CTTATCGACT
Statistics
Matches: 102, Mismatches: 26, Indels: 6
0.76 0.19 0.04
Matches are distributed among these distances:
26 8 0.08
27 94 0.92
ACGTcount: A:0.32, C:0.10, G:0.20, T:0.38
Consensus pattern (27 bp):
AGGGTATTTCGGTAATTTTACAAATCG
Found at i:78237351 original size:40 final size:40
Alignment explanation
Indices: 78237277--78237453 Score: 268
Period size: 40 Copynumber: 4.5 Consensus size: 40
78237267 AACCCAAGTA
* *
78237277 CCTTCGGGATTTAG-CCGGATATAA-CAATTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAATCAA-TAGCACAAATG
* * *
78237316 CCTTCGGGTCTTAGCCCGGATATAGTCAATAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAATG
*
78237356 CCTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAATG
78237396 CCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAATG
*
78237436 CCTTCGAGACTTAGCCCG
1 CCTTCGGGACTTAGCCCG
78237454 TGTAACGCCC
Statistics
Matches: 125, Mismatches: 11, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
39 12 0.10
40 110 0.88
41 3 0.02
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAATG
Found at i:78238875 original size:40 final size:40
Alignment explanation
Indices: 78238805--78238982 Score: 297
Period size: 40 Copynumber: 4.5 Consensus size: 40
78238795 AAACCAAGTA
* * *
78238805 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAACTG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
78238844 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
78238884 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
78238924 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
78238964 CCTTCGGAACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
78238983 TTATTATCCG
Statistics
Matches: 133, Mismatches: 4, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
39 14 0.11
40 119 0.89
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:78249362 original size:18 final size:18
Alignment explanation
Indices: 78249339--78249374 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
78249329 AGAATTGGCC
*
78249339 AAATGGGCCGGATGGGCT
1 AAATGGGCAGGATGGGCT
*
78249357 AAATGGGCATGATGGGCT
1 AAATGGGCAGGATGGGCT
78249375 GTTGGGCCCA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.25, C:0.14, G:0.42, T:0.19
Consensus pattern (18 bp):
AAATGGGCAGGATGGGCT
Found at i:78249489 original size:29 final size:29
Alignment explanation
Indices: 78249443--78249560 Score: 123
Period size: 29 Copynumber: 4.1 Consensus size: 29
78249433 GTGAGCATGA
*
78249443 ATAT-AATATGATTTGGGCCTAATGGGCC
1 ATATAAATATGAATTGGGCCTAATGGGCC
* *
78249471 ATATAAATGTGAATTGGGCCTAGTGGGCC
1 ATATAAATATGAATTGGGCCTAATGGGCC
* * *
78249500 ATATGAATATGAATTGTGCCAAATGGGCC
1 ATATAAATATGAATTGGGCCTAATGGGCC
* * * * *
78249529 ATTTGAATAAG-ATTGAGCCTAGTGGGCC
1 ATATAAATATGAATTGGGCCTAATGGGCC
78249557 ATAT
1 ATAT
78249561 GCATGTATGT
Statistics
Matches: 75, Mismatches: 14, Indels: 2
0.82 0.15 0.02
Matches are distributed among these distances:
28 21 0.28
29 54 0.72
ACGTcount: A:0.31, C:0.14, G:0.26, T:0.30
Consensus pattern (29 bp):
ATATAAATATGAATTGGGCCTAATGGGCC
Found at i:78249561 original size:57 final size:58
Alignment explanation
Indices: 78249443--78249561 Score: 152
Period size: 58 Copynumber: 2.1 Consensus size: 58
78249433 GTGAGCATGA
* * ** *
78249443 ATAT-AATATGATTTGGGCCTAATGGGCCATATAAATGTGAATTGGGCCTAGTGGGCC
1 ATATGAATATGAATTGGGCCAAATGGGCCATATAAATAAGAATTGAGCCTAGTGGGCC
* * *
78249500 ATATGAATATGAATTGTGCCAAATGGGCCATTTGAATAAG-ATTGAGCCTAGTGGGCC
1 ATATGAATATGAATTGGGCCAAATGGGCCATATAAATAAGAATTGAGCCTAGTGGGCC
78249557 ATATG
1 ATATG
78249562 CATGTATGTA
Statistics
Matches: 53, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
57 25 0.47
58 28 0.53
ACGTcount: A:0.30, C:0.13, G:0.27, T:0.29
Consensus pattern (58 bp):
ATATGAATATGAATTGGGCCAAATGGGCCATATAAATAAGAATTGAGCCTAGTGGGCC
Found at i:78251125 original size:26 final size:26
Alignment explanation
Indices: 78251096--78251203 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
78251086 TGGTACAAAT
*
78251096 TGATAATGGGTTAGGTAAATGTTCCG
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
78251122 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
78251148 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
78251174 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
78251200 TGAT
1 TGAT
78251204 GGGCATTTCA
Statistics
Matches: 76, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 76 1.00
ACGTcount: A:0.31, C:0.07, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:78253900 original size:40 final size:40
Alignment explanation
Indices: 78253844--78254082 Score: 338
Period size: 40 Copynumber: 6.0 Consensus size: 40
78253834 GATGATAACT
* * * *
78253844 GGCTAAGTCCCAAAGGCATTTGCGCTAGTGACTAGT-TCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TATCCG
*
78253884 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCTG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
*
78253924 GGCTAAGTCCCGAAGGTATTTGTGCGAGTTACTATATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
* *
78253964 GGCTAAGTCCCGAAGGCATTTGTGCAAGATACTATATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
78254004 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
* * * *
78254044 GGCTATGTCCCGAAGGTATTCGAGCGAG-TAGCTATATCC
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCC
78254083 AGTTCAATCC
Statistics
Matches: 181, Mismatches: 16, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
39 3 0.02
40 178 0.98
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
Found at i:78259377 original size:27 final size:27
Alignment explanation
Indices: 78259343--78259519 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
78259333 GAAATTGTAC
78259343 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
78259370 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
78259396 ATGCACTAAGTGTGC-AATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
78259423 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
*
78259451 AGCACTAAGTGTGCGATTTGATTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
78259478 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
78259505 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
78259520 GACTCGATAT
Statistics
Matches: 129, Mismatches: 17, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
26 21 0.16
27 85 0.66
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:78265733 original size:40 final size:40
Alignment explanation
Indices: 78265627--78265867 Score: 353
Period size: 40 Copynumber: 6.0 Consensus size: 40
78265617 GACGATAACT
* * *
78265627 GGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-TCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TATCC
78265667 GGGCTAAGTCCC-AAGGCATTTGTGCGAGTTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
78265706 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
* *
78265746 GGGCTAAGTCCCGAAGGCATTTGTGCAAGATACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
*
78265786 GGGCTAATTCCCGAAGGCATTTGTGCGAGTTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
* * * *
78265826 GGGCTATGTCCCGAAGGTATTCGAGCGAG-TAGCTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCC
78265866 GG
1 GG
78265868 TTCAATCCCG
Statistics
Matches: 185, Mismatches: 13, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
38 1 0.01
39 36 0.19
40 148 0.80
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.27
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
Found at i:78270588 original size:16 final size:16
Alignment explanation
Indices: 78270567--78270597 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
78270557 TGTAATGCCC
78270567 CAAAAATCCTGAAATT
1 CAAAAATCCTGAAATT
78270583 CAAAAATCCTGAAAT
1 CAAAAATCCTGAAAT
78270598 CTTGAATTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.52, C:0.19, G:0.06, T:0.23
Consensus pattern (16 bp):
CAAAAATCCTGAAATT
Found at i:78271854 original size:24 final size:24
Alignment explanation
Indices: 78271821--78271866 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
78271811 ATGAATCGGT
*
78271821 AAAAGCCGAAATGCTGAAAAGCTA
1 AAAAGCCGAAATGCTAAAAAGCTA
*
78271845 AAAAGTCGAAATGCTAAAAAGC
1 AAAAGCCGAAATGCTAAAAAGC
78271867 CGAAAGTTGG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.52, C:0.15, G:0.20, T:0.13
Consensus pattern (24 bp):
AAAAGCCGAAATGCTAAAAAGCTA
Found at i:78271855 original size:16 final size:16
Alignment explanation
Indices: 78271836--78271871 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
78271826 CCGAAATGCT
*
78271836 GAAAAGCTAAAAAGTC
1 GAAAAGCTAAAAAGCC
*
78271852 GAAATGCTAAAAAGCC
1 GAAAAGCTAAAAAGCC
78271868 GAAA
1 GAAA
78271872 GTTGGGCTAC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.56, C:0.14, G:0.19, T:0.11
Consensus pattern (16 bp):
GAAAAGCTAAAAAGCC
Found at i:78272127 original size:29 final size:29
Alignment explanation
Indices: 78272094--78272199 Score: 144
Period size: 29 Copynumber: 3.7 Consensus size: 29
78272084 TATAATATAT
*
78272094 TTGGGCCTAATGGGCCATATGAATGTGAA
1 TTGGGCCTAATGGGCCATATGAATATGAA
*
78272123 TTGGGCCTAATGGGCCATAAGAATATGAA
1 TTGGGCCTAATGGGCCATATGAATATGAA
* * *
78272152 CTGGGCC-AATGGGCCATTTGAATAAG-A
1 TTGGGCCTAATGGGCCATATGAATATGAA
*
78272179 TTGGGCCTAGTGGGCCATATG
1 TTGGGCCTAATGGGCCATATG
78272200 CATGTATGTA
Statistics
Matches: 67, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 7 0.10
28 27 0.40
29 33 0.49
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.25
Consensus pattern (29 bp):
TTGGGCCTAATGGGCCATATGAATATGAA
Found at i:78282877 original size:29 final size:28
Alignment explanation
Indices: 78282795--78282880 Score: 102
Period size: 28 Copynumber: 3.0 Consensus size: 28
78282785 CTATGAGTAT
* * *
78282795 GATTGGGCCTGACGGGCCATATGAATGT
1 GATTGGGCCTAAGGGGCCATATGAATGA
*
78282823 GATTGGGCC-CAGTGGGCCATATGAATGA
1 GATTGGGCCTAAG-GGGCCATATGAATGA
*
78282851 GATTGGGCCTAAAGGGGCCAAATGAATGA
1 GATTGGGCCT-AAGGGGCCATATGAATGA
78282880 G
1 G
78282881 TATGATTCTG
Statistics
Matches: 50, Mismatches: 5, Indels: 5
0.83 0.08 0.08
Matches are distributed among these distances:
27 1 0.02
28 32 0.64
29 15 0.30
30 2 0.04
ACGTcount: A:0.27, C:0.16, G:0.36, T:0.21
Consensus pattern (28 bp):
GATTGGGCCTAAGGGGCCATATGAATGA
Found at i:78283859 original size:27 final size:26
Alignment explanation
Indices: 78283802--78283955 Score: 175
Period size: 27 Copynumber: 5.8 Consensus size: 26
78283792 ACCATCGAAT
* **
78283802 TTGTAGCAGAGCTGCCAGAACAGATA
1 TTGTGGCAGAGCCACCAGAACAGATA
* * * *
78283828 ATGTGACAGAGTCAACAGATACAGATA
1 TTGTGGCAGAGCCACCAGA-ACAGATA
78283855 TTGTGGCAGAGCCACCAGAACAGATA
1 TTGTGGCAGAGCCACCAGAACAGATA
78283881 TTTGTGGCAGAGCCACCAGAACAGATA
1 -TTGTGGCAGAGCCACCAGAACAGATA
* *
78283908 TTTGTGGCATAGCCACCAGAACAAATA
1 -TTGTGGCAGAGCCACCAGAACAGATA
*
78283935 TTTGTGGCATAG-CACCAGAAC
1 -TTGTGGCAGAGCCACCAGAAC
78283956 GCTTCCTCCA
Statistics
Matches: 113, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
26 28 0.25
27 85 0.75
ACGTcount: A:0.36, C:0.21, G:0.24, T:0.19
Consensus pattern (26 bp):
TTGTGGCAGAGCCACCAGAACAGATA
Found at i:78283936 original size:80 final size:80
Alignment explanation
Indices: 78283800--78283955 Score: 190
Period size: 80 Copynumber: 1.9 Consensus size: 80
78283790 ACACCATCGA
** * *
78283800 ATTTGTAGCAGAGCTGCCAGAACAGATAATGTGACAGAGTCAACAGATACAGATA-TTGTGGCAG
1 ATTTGTAGCAGAGCCACCAGAACAGATAATGTGACAGAGCCAACAGATACAAATATTTGTGGCAG
78283864 AGCCACCAGAACAGAT
66 AG-CACCAGAACAGAT
* * * * *
78283880 ATTTGTGGCAGAGCCACCAGAACAGATATTTGTGGCATAGCCACCAGA-ACAAATATTTGTGGCA
1 ATTTGTAGCAGAGCCACCAGAACAGATA-ATGTGACAGAGCCAACAGATACAAATATTTGTGGCA
*
78283944 TAGCACCAGAAC
65 GAGCACCAGAAC
78283956 GCTTCCTCCA
Statistics
Matches: 64, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
80 40 0.62
81 24 0.38
ACGTcount: A:0.36, C:0.21, G:0.24, T:0.20
Consensus pattern (80 bp):
ATTTGTAGCAGAGCCACCAGAACAGATAATGTGACAGAGCCAACAGATACAAATATTTGTGGCAG
AGCACCAGAACAGAT
Found at i:78284931 original size:64 final size:63
Alignment explanation
Indices: 78284857--78284983 Score: 245
Period size: 64 Copynumber: 2.0 Consensus size: 63
78284847 GCGAAGAAAA
78284857 GAAAGATGGATCAAAAGGATTGAAAGTTGATAAAATAAAATAAAAAAAATATGATAAGAGAATT
1 GAAAGATGGATCAAAAGGATTGAAAGTTGATAAAATAAAAT-AAAAAAATATGATAAGAGAATT
78284921 GAAAGATGGATCAAAAGGATTGAAAGTTGATAAAATAAAATAAAAAAATATGATAAGAGAATT
1 GAAAGATGGATCAAAAGGATTGAAAGTTGATAAAATAAAATAAAAAAATATGATAAGAGAATT
78284984 TGTGTTGAAA
Statistics
Matches: 63, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
63 22 0.35
64 41 0.65
ACGTcount: A:0.57, C:0.02, G:0.19, T:0.22
Consensus pattern (63 bp):
GAAAGATGGATCAAAAGGATTGAAAGTTGATAAAATAAAATAAAAAAATATGATAAGAGAATT
Found at i:78287352 original size:19 final size:21
Alignment explanation
Indices: 78287319--78287359 Score: 68
Period size: 20 Copynumber: 2.0 Consensus size: 21
78287309 GCATTAATAG
78287319 AAAAGTCATGTTTTTA-CTAA
1 AAAAGTCATGTTTTTATCTAA
78287339 AAAAGTCATG-TTTTATCTAA
1 AAAAGTCATGTTTTTATCTAA
78287359 A
1 A
78287360 GTCTTTCTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
19 5 0.25
20 15 0.75
ACGTcount: A:0.41, C:0.10, G:0.10, T:0.39
Consensus pattern (21 bp):
AAAAGTCATGTTTTTATCTAA
Found at i:78288241 original size:27 final size:27
Alignment explanation
Indices: 78288198--78288310 Score: 131
Period size: 27 Copynumber: 4.2 Consensus size: 27
78288188 AGTAGAGCTG
* * *
78288198 CCAGAACAGATA-ATGTGACAGAGTCA
1 CCAGAACAGATACTTGTGGCAGAGCCA
78288224 CCAGATACAGATA-TTGTGGCAGAGCCA
1 CCAGA-ACAGATACTTGTGGCAGAGCCA
** * *
78288251 AAAGAACAGATATTTGTGGCATAGCCA
1 CCAGAACAGATACTTGTGGCAGAGCCA
*
78288278 CCAGAACAGATACTTGTGGCATAGCCA
1 CCAGAACAGATACTTGTGGCAGAGCCA
78288305 CCAGAA
1 CCAGAA
78288311 TGCTTCCTCC
Statistics
Matches: 76, Mismatches: 9, Indels: 3
0.86 0.10 0.03
Matches are distributed among these distances:
26 12 0.16
27 64 0.84
ACGTcount: A:0.38, C:0.21, G:0.23, T:0.18
Consensus pattern (27 bp):
CCAGAACAGATACTTGTGGCAGAGCCA
Found at i:78290841 original size:27 final size:28
Alignment explanation
Indices: 78290793--78290850 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 28
78290783 ATAATAAAGT
* *
78290793 GAAATTACTAAAAATGCCCCTAAGGGTG
1 GAAATGACTAAAAATACCCCTAAGGGTG
* *
78290821 GAAATGACT-AAAATACCCCTATGTGTG
1 GAAATGACTAAAAATACCCCTAAGGGTG
78290848 GAA
1 GAA
78290851 TGTAAGATTT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
27 18 0.69
28 8 0.31
ACGTcount: A:0.40, C:0.17, G:0.21, T:0.22
Consensus pattern (28 bp):
GAAATGACTAAAAATACCCCTAAGGGTG
Found at i:78299066 original size:37 final size:37
Alignment explanation
Indices: 78299025--78299098 Score: 148
Period size: 37 Copynumber: 2.0 Consensus size: 37
78299015 TCGTATAATG
78299025 AAACACATGCACTTTTTATCTTACCCAAGCCTAGCCT
1 AAACACATGCACTTTTTATCTTACCCAAGCCTAGCCT
78299062 AAACACATGCACTTTTTATCTTACCCAAGCCTAGCCT
1 AAACACATGCACTTTTTATCTTACCCAAGCCTAGCCT
78299099 TACACTTTTC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.30, C:0.32, G:0.08, T:0.30
Consensus pattern (37 bp):
AAACACATGCACTTTTTATCTTACCCAAGCCTAGCCT
Found at i:78301363 original size:43 final size:42
Alignment explanation
Indices: 78301293--78301381 Score: 115
Period size: 43 Copynumber: 2.1 Consensus size: 42
78301283 CAATGCCAGC
* * *
78301293 GTCCCAGACATGGTCTTAAATGTAATCAAATATCGATGTCAAT
1 GTCCCAGACAGGGTCTTAAATGAAATCAAATA-CGATGCCAAT
* * *
78301336 GTCCCAGATAGGGTCTTACATGAAATCAAATACGATGCCGAT
1 GTCCCAGACAGGGTCTTAAATGAAATCAAATACGATGCCAAT
78301378 GTCC
1 GTCC
78301382 TAAACGTGGT
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
42 12 0.30
43 28 0.70
ACGTcount: A:0.33, C:0.21, G:0.19, T:0.27
Consensus pattern (42 bp):
GTCCCAGACAGGGTCTTAAATGAAATCAAATACGATGCCAAT
Found at i:78301393 original size:42 final size:44
Alignment explanation
Indices: 78301293--78301406 Score: 112
Period size: 43 Copynumber: 2.7 Consensus size: 44
78301283 CAATGCCAGC
* * * *
78301293 GTCCCAGACA-TGGTCTTAAATGTAATCAAATATCGATGTCAAT
1 GTCCCAGATAGTGGTCTTACATGAAATCAAATATCGATGCCAAT
*
78301336 GTCCCAGATAG-GGTCTTACATGAAATCAAATA-CGATGCCGAT
1 GTCCCAGATAGTGGTCTTACATGAAATCAAATATCGATGCCAAT
* *
78301378 GTCCTA-A-ACGTGGTCTTACACGTAAATCA
1 GTCCCAGATA-GTGGTCTTACATG-AAATCA
78301407 TAAGTCGATG
Statistics
Matches: 60, Mismatches: 7, Indels: 8
0.80 0.09 0.11
Matches are distributed among these distances:
40 1 0.02
41 2 0.03
42 23 0.38
43 34 0.57
ACGTcount: A:0.33, C:0.21, G:0.18, T:0.27
Consensus pattern (44 bp):
GTCCCAGATAGTGGTCTTACATGAAATCAAATATCGATGCCAAT
Found at i:78307481 original size:27 final size:26
Alignment explanation
Indices: 78307451--78307572 Score: 129
Period size: 27 Copynumber: 4.5 Consensus size: 26
78307441 TATTGAGTCT
* *
78307451 GCACACTCAGTGCTATATAATCAACTC
1 GCACACTTAGTGCTACATAATCAA-TC
*
78307478 GCACACTTAGTGCTACGTAATCAAATC
1 GCACACTTAGTGCTACATAATC-AATC
* *
78307505 GCACACTTAGTGC-ATCATATTCATTTC
1 GCACACTTAGTGCTA-CATAATCA-ATC
* *
78307532 GCACACTTAGTGCAACATAGTCGAATC
1 GCACACTTAGTGCTACATAATC-AATC
78307559 GCACACTTAGTGCT
1 GCACACTTAGTGCT
78307573 GTACAATTTA
Statistics
Matches: 81, Mismatches: 9, Indels: 10
0.81 0.09 0.10
Matches are distributed among these distances:
26 2 0.02
27 75 0.93
28 4 0.05
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.28
Consensus pattern (26 bp):
GCACACTTAGTGCTACATAATCAATC
Found at i:78550122 original size:47 final size:46
Alignment explanation
Indices: 78549954--78550128 Score: 157
Period size: 46 Copynumber: 3.8 Consensus size: 46
78549944 TGTAACCCGC
* * *
78549954 CCATAAG-G-ACTCGGA-TCACATCTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCA-A-CTCAACGAGTTCGGACATTCGCAT
*
78549999 CCATAAGTGAACTCGGACTCAACTCAACGAGTCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGT-TCGGACATTCGC-A--T
* ****
78550046 ACATCTCCG-ACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
78550091 CCATAAGTGAACTCGGACTTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGAC-TCAACTCAACGAGTTCGGA
78550129 TGCTAACCAT
Statistics
Matches: 104, Mismatches: 14, Indels: 22
0.74 0.10 0.16
Matches are distributed among these distances:
44 1 0.01
45 19 0.18
46 40 0.38
47 40 0.38
48 4 0.04
ACGTcount: A:0.27, C:0.30, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:78550128 original size:92 final size:93
Alignment explanation
Indices: 78549961--78550131 Score: 276
Period size: 92 Copynumber: 1.8 Consensus size: 93
78549951 CGCCCATAAG
* *
78549961 GACTCGGATCACATCTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GACTCGGATCACATCTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
78550026 CGAGTCTCGGATGCCTAGTTACATCTCC
66 CGAGTCTCGGATGCCTAGTTACATCTCC
*
78550054 GACTCGGACTCA-A-CTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTTCAACTC
1 GACTCGGA-TCACATCTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGAC-TCAACTC
78550117 AACGAGT-TCGGATGC
64 AACGAGTCTCGGATGC
78550132 TAACCATCCT
Statistics
Matches: 73, Mismatches: 3, Indels: 5
0.90 0.04 0.06
Matches are distributed among these distances:
92 47 0.64
93 23 0.32
94 3 0.04
ACGTcount: A:0.26, C:0.30, G:0.22, T:0.22
Consensus pattern (93 bp):
GACTCGGATCACATCTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTCTCGGATGCCTAGTTACATCTCC
Found at i:78555595 original size:27 final size:27
Alignment explanation
Indices: 78555565--78555742 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
78555555 ATATTGAGTC
* * * *
78555565 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
78555592 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
78555619 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
78555647 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
78555674 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
78555701 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
78555728 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
78555743 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:78555704 original size:82 final size:81
Alignment explanation
Indices: 78555586--78555741 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
78555576 TGCTATATAA
* *
78555586 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
78555651 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
78555668 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
78555732 CACTTAGTGC
65 CACTTAGTGC
78555742 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:78557851 original size:15 final size:15
Alignment explanation
Indices: 78557831--78557899 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
78557821 GTATCTTGGG
78557831 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
78557846 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
78557861 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
78557876 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
78557891 TTTCTTTAT
1 TTTCTTTAT
78557900 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:78557900 original size:30 final size:30
Alignment explanation
Indices: 78557822--78557909 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
78557812 CATAGTATCG
* * * *
78557822 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
78557852 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
78557882 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
78557910 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:78559670 original size:46 final size:45
Alignment explanation
Indices: 78559617--78559792 Score: 194
Period size: 46 Copynumber: 3.8 Consensus size: 45
78559607 TGGTTGAGCA
*
78559617 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *** * *
78559663 TCTGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
*
78559710 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
78559756 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
78559793 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 15, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 67 0.62
47 31 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.30
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:78559773 original size:93 final size:93
Alignment explanation
Indices: 78559614--78559784 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
78559604 GGATGGTTGA
* * * *
78559614 GCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATGTCTGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
78559679 TGAGTCCGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
* *
78559707 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
78559772 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
78559785 ACTTATGGGC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:78565896 original size:50 final size:50
Alignment explanation
Indices: 78565779--78566172 Score: 383
Period size: 50 Copynumber: 7.8 Consensus size: 50
78565769 ATTGTGAGAA
* * * *** * *
78565779 CACATGTGTAGTACTATGTGCAGGCTACAATGTGTTTAAGATAGTTTTAGTT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT--TGTTAGGT
* * *
78565831 CACGTGTGTAGTACTAAGTACAGGTTACTACGTGTACCAGATTGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
* * * * * * *
78565881 CGCATGTGTAGTACTAAGTGTAGGCTACTATGTGTACCCGATAGTTTCGAT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG-TTAGGT
* * * * * *
78565932 CACGTGTGTAGTAATAAGTGTAGGCTACTACGTGTATCAAATGGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
* * * * *
78565982 CACGTGTGCAGTACTAAGTGTAGGCTACTACGTGTACCGGATTGATAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
* * * * *
78566032 CGCATGTGTAGTACTAAGTGCAAGCTACTACGTGTATCAGATGGTTAAGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
* * * *
78566082 CACGTGTGTAGTACTAAGTACAGGCTACTACGTGTACTAGATTGATAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
* * * *
78566132 CGCATGTGTAGTACTATGTGCAGGCTACTATGCGTACCAGA
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA
78566173 GAGCTTCAAT
Statistics
Matches: 277, Mismatches: 64, Indels: 4
0.80 0.19 0.01
Matches are distributed among these distances:
50 204 0.74
51 40 0.14
52 33 0.12
ACGTcount: A:0.26, C:0.16, G:0.26, T:0.31
Consensus pattern (50 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
Found at i:78571132 original size:37 final size:37
Alignment explanation
Indices: 78571082--78571160 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
78571072 TTATTACGAA
* *
78571082 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
78571119 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
78571156 GTCTT
1 GTCTT
78571161 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:78571366 original size:47 final size:47
Alignment explanation
Indices: 78571279--78571470 Score: 285
Period size: 47 Copynumber: 4.1 Consensus size: 47
78571269 CCCTTTGGGA
* * * * * * *
78571279 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*** *
78571326 CCCGTAACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
78571373 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
78571420 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
78571467 CTTA
1 CTTA
78571471 CTATCATTTC
Statistics
Matches: 130, Mismatches: 15, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 130 1.00
ACGTcount: A:0.28, C:0.31, G:0.10, T:0.31
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:78576749 original size:50 final size:50
Alignment explanation
Indices: 78576627--78576918 Score: 280
Period size: 50 Copynumber: 5.8 Consensus size: 50
78576617 TGTGAGAACA
* * * ** *
78576627 CATGTGCAGTACTATGTGCAGGCTACTATGTGTTTCAGACAGTTTTAGGTC-
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG--TTAGGTCG
* * * * *
78576678 AAGTGTGTAGTACTAAATGCAGGCTACTACGTGTACCCGATTGTTAGGTTG
1 CA-TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCG
* * * * * * *
78576729 CATATATAGTACTAAGTGCAGGCTACTATGTGTACCCGATAGTTTCGATCA
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG-TTAGGTCG
* * ** *
78576780 CGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAGTTAAATCA
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCG
* * *
78576830 CGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCG
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCG
* * *
78576880 CTTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGA
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA
78576919 GAGCTTCTGT
Statistics
Matches: 200, Mismatches: 38, Indels: 7
0.82 0.16 0.03
Matches are distributed among these distances:
50 127 0.63
51 42 0.21
52 31 0.16
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.31
Consensus pattern (50 bp):
CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCG
Found at i:78576811 original size:101 final size:101
Alignment explanation
Indices: 78576634--78576918 Score: 320
Period size: 101 Copynumber: 2.8 Consensus size: 101
78576624 ACACATGTGC
* ** * * *
78576634 AGTACTATGTGCAGGCTACTATGTGTTTCAGACAGTTTTAGGTCAAGTGTGTAGTACTAAATGCA
1 AGTACTAAGTGCAGGCTACTATGTGTACCAGATAG-TTTAGGTCACGTGTGTAGTACTAAGTGCA
* * ** **
78576699 GGCTACTACGTGTACCCGATTGTTAGGTTGCATATAT
65 GGCTACTACGTGTACCAGATAGTTAAATCACATATAT
* * *
78576736 AGTACTAAGTGCAGGCTACTATGTGTACCCGATAGTTTCGATCACGTGTGTAGTACTAAGTGCAG
1 AGTACTAAGTGCAGGCTACTATGTGTACCAGATAGTTTAGGTCACGTGTGTAGTACTAAGTGCAG
* * * *
78576801 GCTACTACGTGTATCAGATAGTTAAATCACGTGTGT
66 GCTACTACGTGTACCAGATAGTTAAATCACATATAT
* * * * *
78576837 AGTACTAAGTGCAGGCTACTACGTGTACCAGATTG-ATAGGTCGCTTGTGTAGTACTAAGTGCAG
1 AGTACTAAGTGCAGGCTACTATGTGTACCAGATAGTTTAGGTCACGTGTGTAGTACTAAGTGCAG
* *
78576901 GCTACTATGCGTACCAGA
66 GCTACTACGTGTACCAGA
78576919 GAGCTTCTGT
Statistics
Matches: 153, Mismatches: 30, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
100 39 0.25
101 84 0.55
102 30 0.20
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.31
Consensus pattern (101 bp):
AGTACTAAGTGCAGGCTACTATGTGTACCAGATAGTTTAGGTCACGTGTGTAGTACTAAGTGCAG
GCTACTACGTGTACCAGATAGTTAAATCACATATAT
Found at i:78576915 original size:151 final size:152
Alignment explanation
Indices: 78576629--78576915 Score: 414
Period size: 151 Copynumber: 1.9 Consensus size: 152
78576619 TGAGAACACA
* * * **
78576629 TGTGCAGTACTATGTGCAGGCTACTATGTGTTTCAGACAGTTTTAGGTCAAGTGTGTAGTACTAA
1 TGTGCAGTACTAAGTGCAGGCTACTACGTGTATCAGACAG-TTTAAATCAAGTGTGTAGTACTAA
* * *
78576694 ATGCAGGCTACTACGTGTACCCGATTGTTAGGTTGCATATATAGTACTAAGTGCAGGCTACTATG
65 ATGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATATATAGTACTAAGTGCAGGCTACTATG
*
78576759 TGTACCCGATAGTTTCGATCACG
130 CGTACCCGATAGTTTCGATCACG
* * * *
78576782 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAG-TTAAATCACGTGTGTAGTACTAAG
1 TGTGCAGTACTAAGTGCAGGCTACTACGTGTATCAGACAGTTTAAATCAAGTGTGTAGTACTAAA
* * *
78576846 TGCAGGCTACTACGTGTACCAGATTGATAGGTCGCTTGTGTAGTACTAAGTGCAGGCTACTATGC
66 TGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATATATAGTACTAAGTGCAGGCTACTATGC
78576911 GTACC
131 GTACC
78576916 AGAGAGCTTC
Statistics
Matches: 118, Mismatches: 16, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
151 83 0.70
153 35 0.30
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.31
Consensus pattern (152 bp):
TGTGCAGTACTAAGTGCAGGCTACTACGTGTATCAGACAGTTTAAATCAAGTGTGTAGTACTAAA
TGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATATATAGTACTAAGTGCAGGCTACTATGC
GTACCCGATAGTTTCGATCACG
Found at i:78578279 original size:19 final size:19
Alignment explanation
Indices: 78578257--78578298 Score: 75
Period size: 19 Copynumber: 2.2 Consensus size: 19
78578247 AACTTGGTGT
78578257 AACATGAGTATAGATAATA
1 AACATGAGTATAGATAATA
*
78578276 AACATGAGTATAGGTAATA
1 AACATGAGTATAGATAATA
78578295 AACA
1 AACA
78578299 CATGTATGAC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.52, C:0.07, G:0.17, T:0.24
Consensus pattern (19 bp):
AACATGAGTATAGATAATA
Found at i:78587875 original size:40 final size:40
Alignment explanation
Indices: 78587831--78588057 Score: 336
Period size: 40 Copynumber: 5.7 Consensus size: 40
78587821 TCGTAGCTTA
78587831 CGGGTCTTTAAGCCCGGATACAATTCCAGCATGA-AGCCTG
1 CGGGTCTTTAAGCCCGGATACAATTCCAGCAT-ATAGCCTG
*
78587871 CGGGTCTTTAAGCCCAGATA-ACATTCCAGCATATAGCCTG
1 CGGGTCTTTAAGCCCGGATACA-ATTCCAGCATATAGCCTG
*
78587911 CGGGTCTTAAAGCCCGGATA-ACATTCCAGCATATAGCCTG
1 CGGGTCTTTAAGCCCGGATACA-ATTCCAGCATATAGCCTG
* * *
78587951 TGGGTCTTTAAGCCCGGATACAATTCTAGCACGA-AGCCTG
1 CGGGTCTTTAAGCCCGGATACAATTCCAGCA-TATAGCCTG
*
78587991 CGGGTCTTTAAGCCCGGATACAATTCCAGCATATAGCCTA
1 CGGGTCTTTAAGCCCGGATACAATTCCAGCATATAGCCTG
78588031 CGGGTCTTTAAGCCCGGATACAATTCC
1 CGGGTCTTTAAGCCCGGATACAATTCC
78588058 TCAAGTATCA
Statistics
Matches: 171, Mismatches: 11, Indels: 10
0.89 0.06 0.05
Matches are distributed among these distances:
39 3 0.02
40 166 0.97
41 2 0.01
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
CGGGTCTTTAAGCCCGGATACAATTCCAGCATATAGCCTG
Found at i:78588057 original size:120 final size:120
Alignment explanation
Indices: 78587832--78588050 Score: 377
Period size: 120 Copynumber: 1.8 Consensus size: 120
78587822 CGTAGCTTAC
*
78587832 GGGTCTTTAAGCCCGGATACAATTCCAGCATGAAGCCTGCGGGTCTTTAAGCCCAGATAACATTC
1 GGGTCTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCAGATAACATTC
*
78587897 CAGCATATAGCCTGCGGGTCTTAAAGCCCGGATAACATTCCAGCATATAGCCTGT
66 CAGCATATAGCCTACGGGTCTTAAAGCCCGGATAACATTCCAGCATATAGCCTGT
* *
78587952 GGGTCTTTAAGCCCGGATACAATTCTAGCACGAAGCCTGCGGGTCTTTAAGCCCGGAT-ACAATT
1 GGGTCTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCAGATAAC-ATT
*
78588016 CCAGCATATAGCCTACGGGTCTTTAAGCCCGGATA
65 CCAGCATATAGCCTACGGGTCTTAAAGCCCGGATA
78588051 CAATTCCTCA
Statistics
Matches: 93, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
119 2 0.02
120 91 0.98
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.24
Consensus pattern (120 bp):
GGGTCTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCAGATAACATTC
CAGCATATAGCCTACGGGTCTTAAAGCCCGGATAACATTCCAGCATATAGCCTGT
Found at i:78604589 original size:30 final size:30
Alignment explanation
Indices: 78604555--78604614 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
78604545 ATTTAATACG
* *
78604555 AACTTTGGTAAAATTACATTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
* *
78604585 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
78604615 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.28, C:0.23, G:0.08, T:0.40
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTGCCCCTA
Found at i:78605527 original size:39 final size:37
Alignment explanation
Indices: 78605484--78605736 Score: 218
Period size: 40 Copynumber: 6.4 Consensus size: 37
78605474 CCTACGGGAA
* * * *
78605484 TTTAAACCCGGTATAATACTAGCTTGTAGCCTGCAGGTC
1 TTTAAGCCCGG-ATAATTCCAGCATGTAGCCTGC-GGTC
*
78605523 TTTAAGCCCGGATACAATTCCAGCATGAAGCCTGCGGTTC
1 TTTAAGCCCGGAT--AATTCCAGCATGTAGCCTGCGG-TC
*
78605563 TTTAAGCCCGGATAACATTCCAGCATATAGCCTGCGGGTC
1 TTTAAGCCCGGAT-A-ATTCCAGCATGTAGCCTGC-GGTC
* *
78605603 TTTAAGCCCGGATAACATTCCAACATATAGCCTGCGGGTC
1 TTTAAGCCCGGAT-A-ATTCCAGCATGTAGCCTGC-GGTC
* * *
78605643 TTTAAGCCCAGATACAATTCCAGCACGAAGCCTGCGAGTC
1 TTTAAGCCCGGAT--AATTCCAGCATGTAGCCTGCG-GTC
* * * *
78605683 TTTAAGCTCAGATACAATTCTAGCATATAGCCTGCGGGTC
1 TTTAAGCCCGGAT--AATTCCAGCATGTAGCCTGC-GGTC
78605723 TTTAAGCCCGGATA
1 TTTAAGCCCGGATA
78605737 CAATTCCTCA
Statistics
Matches: 184, Mismatches: 22, Indels: 17
0.83 0.10 0.08
Matches are distributed among these distances:
38 3 0.02
39 14 0.08
40 163 0.89
41 4 0.02
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.26
Consensus pattern (37 bp):
TTTAAGCCCGGATAATTCCAGCATGTAGCCTGCGGTC
Found at i:78605565 original size:40 final size:40
Alignment explanation
Indices: 78605510--78605743 Score: 323
Period size: 40 Copynumber: 5.8 Consensus size: 40
78605500 TACTAGCTTG
*
78605510 TAGCCTGCAGGTCTTTAAGCCCGGATACAATTCCAGCATGA
1 TAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCAT-A
*
78605551 -AGCCTGCGGTTCTTTAAGCCCGGATA-ACATTCCAGCATA
1 TAGCCTGCGGGTCTTTAAGCCCGGATACA-ATTCCAGCATA
*
78605590 TAGCCTGCGGGTCTTTAAGCCCGGATA-ACATTCCAACATA
1 TAGCCTGCGGGTCTTTAAGCCCGGATACA-ATTCCAGCATA
* *
78605630 TAGCCTGCGGGTCTTTAAGCCCAGATACAATTCCAGCACGA
1 TAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCA-TA
* * * *
78605671 -AGCCTGCGAGTCTTTAAGCTCAGATACAATTCTAGCATA
1 TAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCATA
78605710 TAGCCTGCGGGTCTTTAAGCCCGGATACAATTCC
1 TAGCCTGCGGGTCTTTAAGCCCGGATACAATTCC
78605744 TCAAGTATCA
Statistics
Matches: 173, Mismatches: 15, Indels: 11
0.87 0.08 0.06
Matches are distributed among these distances:
39 3 0.02
40 168 0.97
41 2 0.01
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
TAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCATA
Found at i:78605743 original size:120 final size:120
Alignment explanation
Indices: 78605510--78605736 Score: 368
Period size: 120 Copynumber: 1.9 Consensus size: 120
78605500 TACTAGCTTG
* * *
78605510 TAGCCTGCAGGTCTTTAAGCCCGGATACAATTCCAGCATGAAGCCTGCGGTTCTTTAAGCCCGGA
1 TAGCCTGCAGGTCTTTAAGCCCAGATACAATTCCAGCACGAAGCCTGCGGTTCTTTAAGCCCAGA
78605575 TAACATTCCAGCATATAGCCTGCGGGTCTTTAAGCCCGGATAACATTCCAACATA
66 TAACATTCCAGCATATAGCCTGCGGGTCTTTAAGCCCGGATAACATTCCAACATA
* *
78605630 TAGCCTGCGGGTCTTTAAGCCCAGATACAATTCCAGCACGAAGCCTGCGAG-TCTTTAAGCTCAG
1 TAGCCTGCAGGTCTTTAAGCCCAGATACAATTCCAGCACGAAGCCTGCG-GTTCTTTAAGCCCAG
*
78605694 AT-ACAATTCTAGCATATAGCCTGCGGGTCTTTAAGCCCGGATA
65 ATAAC-ATTCCAGCATATAGCCTGCGGGTCTTTAAGCCCGGATA
78605737 CAATTCCTCA
Statistics
Matches: 99, Mismatches: 6, Indels: 4
0.91 0.06 0.04
Matches are distributed among these distances:
119 2 0.02
120 96 0.97
121 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (120 bp):
TAGCCTGCAGGTCTTTAAGCCCAGATACAATTCCAGCACGAAGCCTGCGGTTCTTTAAGCCCAGA
TAACATTCCAGCATATAGCCTGCGGGTCTTTAAGCCCGGATAACATTCCAACATA
Found at i:78609057 original size:43 final size:43
Alignment explanation
Indices: 78609002--78609145 Score: 134
Period size: 44 Copynumber: 3.3 Consensus size: 43
78608992 CCAACGTCCC
* *
78609002 AGACGTCG-TCTTACATGCAATCAAATATCGATGCCACTATCCT
1 AGACGT-GATCTTACATGAAATCAAATATCGATGCCAATATCCT
** * *
78609045 AGACAG-GATCTTACACAAAATCAAATA-CAATGCCAATGTCCT
1 AGAC-GTGATCTTACATGAAATCAAATATCGATGCCAATATCCT
* * *
78609087 AGACGTGGTCTTACATGTAAATCATAAT-TCGATGCCAACATCCC
1 AGACGTGATCTTACATG-AAATCA-AATATCGATGCCAATATCCT
*
78609131 AGACGTGGTCTTACA
1 AGACGTGATCTTACA
78609146 CGATAATACA
Statistics
Matches: 82, Mismatches: 13, Indels: 11
0.77 0.12 0.10
Matches are distributed among these distances:
41 1 0.01
42 25 0.30
43 26 0.32
44 30 0.37
ACGTcount: A:0.34, C:0.25, G:0.15, T:0.26
Consensus pattern (43 bp):
AGACGTGATCTTACATGAAATCAAATATCGATGCCAATATCCT
Found at i:78617168 original size:29 final size:30
Alignment explanation
Indices: 78617111--78617168 Score: 82
Period size: 29 Copynumber: 2.0 Consensus size: 30
78617101 TGAAAGGTGA
* * *
78617111 GTAAAAGTTTTGGAGGGAAAGTGAGAAGGG
1 GTAAAAGTTTTGGAAGGAAAGTAAAAAGGG
78617141 GTAAAAGTTTT-GAAGGAAAGTAAAAAGG
1 GTAAAAGTTTTGGAAGGAAAGTAAAAAGG
78617169 TTTGAGAGTT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
29 14 0.56
30 11 0.44
ACGTcount: A:0.43, C:0.00, G:0.36, T:0.21
Consensus pattern (30 bp):
GTAAAAGTTTTGGAAGGAAAGTAAAAAGGG
Found at i:78617228 original size:9 final size:9
Alignment explanation
Indices: 78617210--78617255 Score: 65
Period size: 9 Copynumber: 5.1 Consensus size: 9
78617200 TATAGTTTGA
*
78617210 TATTCAAAT
1 TATTCGAAT
78617219 TATTCGAAT
1 TATTCGAAT
78617228 TATTCGAAT
1 TATTCGAAT
*
78617237 TATTCGAGT
1 TATTCGAAT
*
78617246 TTTTCGAAT
1 TATTCGAAT
78617255 T
1 T
78617256 CGAAAACTCA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
9 33 1.00
ACGTcount: A:0.30, C:0.11, G:0.11, T:0.48
Consensus pattern (9 bp):
TATTCGAAT
Found at i:78625418 original size:44 final size:44
Alignment explanation
Indices: 78625355--78625443 Score: 178
Period size: 44 Copynumber: 2.0 Consensus size: 44
78625345 TCGAACCCTA
78625355 TCCTGGAATCGGATACGGGCAAGAGGTGTTACATGTTCATATTT
1 TCCTGGAATCGGATACGGGCAAGAGGTGTTACATGTTCATATTT
78625399 TCCTGGAATCGGATACGGGCAAGAGGTGTTACATGTTCATATTT
1 TCCTGGAATCGGATACGGGCAAGAGGTGTTACATGTTCATATTT
78625443 T
1 T
78625444 AAGTACACTT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 45 1.00
ACGTcount: A:0.25, C:0.16, G:0.27, T:0.33
Consensus pattern (44 bp):
TCCTGGAATCGGATACGGGCAAGAGGTGTTACATGTTCATATTT
Found at i:78630321 original size:43 final size:43
Alignment explanation
Indices: 78630273--78630371 Score: 155
Period size: 43 Copynumber: 2.3 Consensus size: 43
78630263 GAACTACAGA
* *
78630273 CTTCACGCGGCATG-GACACACGCCCATGTCCTAAGGCCGTGTC
1 CTTCACACGGC-TGAGACACACGCCCATGTCCTAAGGCCATGTC
*
78630316 CTTCACACGGCTGAGACACACGCCTATGTCCTAAGGCCATGTC
1 CTTCACACGGCTGAGACACACGCCCATGTCCTAAGGCCATGTC
78630359 CTTCACACGGCTG
1 CTTCACACGGCTG
78630372 TGTCTCTGCC
Statistics
Matches: 52, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
42 2 0.04
43 50 0.96
ACGTcount: A:0.20, C:0.36, G:0.23, T:0.20
Consensus pattern (43 bp):
CTTCACACGGCTGAGACACACGCCCATGTCCTAAGGCCATGTC
Found at i:78632379 original size:13 final size:13
Alignment explanation
Indices: 78632363--78632399 Score: 65
Period size: 13 Copynumber: 2.8 Consensus size: 13
78632353 GTAATTTTGA
78632363 TGATGATTTTTCT
1 TGATGATTTTTCT
78632376 TGATGATTTTTCT
1 TGATGATTTTTCT
78632389 TGATGACTTTT
1 TGATGA-TTTT
78632400 GCATTTTTAG
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
13 19 0.83
14 4 0.17
ACGTcount: A:0.16, C:0.08, G:0.16, T:0.59
Consensus pattern (13 bp):
TGATGATTTTTCT
Found at i:78632380 original size:16 final size:16
Alignment explanation
Indices: 78632359--78632394 Score: 51
Period size: 13 Copynumber: 2.4 Consensus size: 16
78632349 GTAAGTAATT
78632359 TTGATGATGATTTTTC
1 TTGATGATGATTTTTC
78632375 -T--TGATGATTTTTC
1 TTGATGATGATTTTTC
78632388 TTGATGA
1 TTGATGA
78632395 CTTTTGCATT
Statistics
Matches: 17, Mismatches: 0, Indels: 6
0.74 0.00 0.26
Matches are distributed among these distances:
13 12 0.71
14 1 0.06
15 1 0.06
16 3 0.18
ACGTcount: A:0.19, C:0.06, G:0.19, T:0.56
Consensus pattern (16 bp):
TTGATGATGATTTTTC
Found at i:78634867 original size:25 final size:24
Alignment explanation
Indices: 78634801--78634867 Score: 89
Period size: 25 Copynumber: 2.7 Consensus size: 24
78634791 GATACCAAAC
78634801 TTTCATTGTTATCCATTTTTGACCT
1 TTTCATTGTTATCC-TTTTTGACCT
* * *
78634826 TTTCAATGATATTCTTTTTGACCT
1 TTTCATTGTTATCCTTTTTGACCT
78634850 TTTCACTTGTTATCCTTT
1 TTTCA-TTGTTATCCTTT
78634868 CAGGATAATT
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
24 15 0.43
25 20 0.57
ACGTcount: A:0.16, C:0.19, G:0.07, T:0.57
Consensus pattern (24 bp):
TTTCATTGTTATCCTTTTTGACCT
Found at i:78636460 original size:13 final size:13
Alignment explanation
Indices: 78636437--78636505 Score: 70
Period size: 13 Copynumber: 5.3 Consensus size: 13
78636427 ACATATCTAT
*
78636437 ATTT-ATATAAAT
1 ATTTCATATAAAC
*
78636449 ATTTCTTATAAAC
1 ATTTCATATAAAC
*
78636462 ATTTCATATAACC
1 ATTTCATATAAAC
*
78636475 ATTTCATAT-ATC
1 ATTTCATATAAAC
78636487 TATTTCCATATAAAC
1 -ATTT-CATATAAAC
78636502 ATTT
1 ATTT
78636506 TGTATATCTA
Statistics
Matches: 47, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
12 6 0.13
13 30 0.64
14 9 0.19
15 2 0.04
ACGTcount: A:0.39, C:0.14, G:0.00, T:0.46
Consensus pattern (13 bp):
ATTTCATATAAAC
Found at i:78636486 original size:53 final size:53
Alignment explanation
Indices: 78636423--78636531 Score: 125
Period size: 53 Copynumber: 2.1 Consensus size: 53
78636413 GAATGTCCCT
* *
78636423 TTTCACATATCTATATT-TATATAAATATTTCT-TATAAAC-ATTTCATATAACCA
1 TTTCACATATCTAT-TTCCATATAAACATTT-TGTAT-AACTATTTCATATAACCA
* * *
78636476 TTTCATATATCTATTTCCATATAAACATTTTGTATATCTATTTCATATTACCA
1 TTTCACATATCTATTTCCATATAAACATTTTGTATAACTATTTCATATAACCA
78636529 TTT
1 TTT
78636532 TCGTTTACTC
Statistics
Matches: 48, Mismatches: 5, Indels: 6
0.81 0.08 0.10
Matches are distributed among these distances:
52 5 0.10
53 43 0.90
ACGTcount: A:0.35, C:0.16, G:0.01, T:0.49
Consensus pattern (53 bp):
TTTCACATATCTATTTCCATATAAACATTTTGTATAACTATTTCATATAACCA
Found at i:78636498 original size:14 final size:13
Alignment explanation
Indices: 78636449--78636531 Score: 67
Period size: 13 Copynumber: 6.3 Consensus size: 13
78636439 TTATATAAAT
* *
78636449 ATTTCTTATAAAC
1 ATTTCATATAACC
78636462 ATTTCATATAACC
1 ATTTCATATAACC
* *
78636475 ATTTCATATATCT
1 ATTTCATATAACC
*
78636488 ATTTCCATATAAAC
1 ATTT-CATATAACC
** * *
78636502 ATTTTGTATATCT
1 ATTTCATATAACC
*
78636515 ATTTCATATTACC
1 ATTTCATATAACC
78636528 ATTT
1 ATTT
78636532 TCGTTTACTC
Statistics
Matches: 52, Mismatches: 17, Indels: 2
0.73 0.24 0.03
Matches are distributed among these distances:
13 42 0.81
14 10 0.19
ACGTcount: A:0.34, C:0.17, G:0.01, T:0.48
Consensus pattern (13 bp):
ATTTCATATAACC
Found at i:78636619 original size:25 final size:25
Alignment explanation
Indices: 78636591--78636650 Score: 84
Period size: 25 Copynumber: 2.4 Consensus size: 25
78636581 ATGTTGGAAC
* *
78636591 AATGCTCACACAAGTTGTGATTGTA
1 AATGCTCACACAAGCTGTGACTGTA
*
78636616 AATGCTCACACGAGCTGTGACTGTA
1 AATGCTCACACAAGCTGTGACTGTA
*
78636641 AATGCACACA
1 AATGCTCACA
78636651 TGAGTTGTAA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 31 1.00
ACGTcount: A:0.33, C:0.22, G:0.20, T:0.25
Consensus pattern (25 bp):
AATGCTCACACAAGCTGTGACTGTA
Found at i:78637302 original size:14 final size:14
Alignment explanation
Indices: 78637270--78637302 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
78637260 AACATTTCAA
*
78637270 GCTCAATAGTAAGT
1 GCTCCATAGTAAGT
78637284 GCTCCATAGTAAGT
1 GCTCCATAGTAAGT
78637298 GCTCC
1 GCTCC
78637303 CTAGCCCCGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.27, C:0.24, G:0.21, T:0.27
Consensus pattern (14 bp):
GCTCCATAGTAAGT
Found at i:78638855 original size:30 final size:30
Alignment explanation
Indices: 78638819--78638877 Score: 118
Period size: 30 Copynumber: 2.0 Consensus size: 30
78638809 CATTAGTTAG
78638819 ACAATGTAAGGGCTTGAATGATATACCTAA
1 ACAATGTAAGGGCTTGAATGATATACCTAA
78638849 ACAATGTAAGGGCTTGAATGATATACCTA
1 ACAATGTAAGGGCTTGAATGATATACCTA
78638878 TTCTGTAACA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.39, C:0.14, G:0.20, T:0.27
Consensus pattern (30 bp):
ACAATGTAAGGGCTTGAATGATATACCTAA
Found at i:78640738 original size:39 final size:39
Alignment explanation
Indices: 78640694--78640892 Score: 335
Period size: 39 Copynumber: 5.1 Consensus size: 39
78640684 AATTATATTA
* * *
78640694 CCAGCACAAAGCCTGCAGGACTTTAGCTCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
*
78640733 CCAGCACGAAGCCTGCGGGACTTTAGCCCGAATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
*
78640772 CCAGCACGAAGCCTGCGGGTCTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
*
78640811 CCAGCACGAAGCCTTCGGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
*
78640850 CCAGCACGAAGCCTGCGGGTCTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
78640889 CCAG
1 CCAG
78640893 TGTCTTGCTT
Statistics
Matches: 150, Mismatches: 10, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 150 1.00
ACGTcount: A:0.24, C:0.31, G:0.24, T:0.22
Consensus pattern (39 bp):
CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
Found at i:78646387 original size:39 final size:39
Alignment explanation
Indices: 78646343--78646572 Score: 379
Period size: 39 Copynumber: 5.9 Consensus size: 39
78646333 ATGCAAGACA
78646343 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* * *
78646382 CTGGAAATGTATCCAGGCTAAAGTCCCGCACGCTTCATG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* *
78646421 CTGGAAATATATCCGGGCCAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
*
78646460 CTGGAAATGTATCTGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* *
78646499 TTGGAAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
*
78646538 CTGGAAATGTATCCGGGTTAAAGTCCCGCAGGCTT
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTT
78646573 TGTACTGATA
Statistics
Matches: 174, Mismatches: 17, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 174 1.00
ACGTcount: A:0.22, C:0.26, G:0.29, T:0.23
Consensus pattern (39 bp):
CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
Found at i:78656186 original size:23 final size:23
Alignment explanation
Indices: 78656160--78656203 Score: 88
Period size: 23 Copynumber: 1.9 Consensus size: 23
78656150 TCCTTATATG
78656160 GGTTGGTTCCATTATATAGATCC
1 GGTTGGTTCCATTATATAGATCC
78656183 GGTTGGTTCCATTATATAGAT
1 GGTTGGTTCCATTATATAGAT
78656204 GCTCTCTTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.23, C:0.14, G:0.23, T:0.41
Consensus pattern (23 bp):
GGTTGGTTCCATTATATAGATCC
Found at i:78658291 original size:35 final size:35
Alignment explanation
Indices: 78658245--78658311 Score: 107
Period size: 35 Copynumber: 1.9 Consensus size: 35
78658235 ATATAGATTA
* *
78658245 TACAATGAATACTTGGAACTATTTCGAGGATCTTG
1 TACAATAAATACTTAGAACTATTTCGAGGATCTTG
*
78658280 TACAATAAATACTTAGAAGTATTTCGAGGATC
1 TACAATAAATACTTAGAACTATTTCGAGGATC
78658312 GTACCCAAGG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
35 29 1.00
ACGTcount: A:0.36, C:0.13, G:0.18, T:0.33
Consensus pattern (35 bp):
TACAATAAATACTTAGAACTATTTCGAGGATCTTG
Found at i:78659429 original size:22 final size:22
Alignment explanation
Indices: 78659404--78659457 Score: 90
Period size: 22 Copynumber: 2.5 Consensus size: 22
78659394 ACAGCTCAAG
*
78659404 GCTGTAAACAGGACATCACATA
1 GCTGTAAACAGGACAACACATA
78659426 GCTGTAAACAGGACAACACATA
1 GCTGTAAACAGGACAACACATA
*
78659448 GCCGTAAACA
1 GCTGTAAACA
78659458 TCACAGCAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.43, C:0.24, G:0.19, T:0.15
Consensus pattern (22 bp):
GCTGTAAACAGGACAACACATA
Found at i:78659924 original size:41 final size:41
Alignment explanation
Indices: 78659866--78660029 Score: 247
Period size: 41 Copynumber: 4.0 Consensus size: 41
78659856 TAAAAGCCAC
* * *
78659866 CGGTGGATCCACGGTCGTCAAGCAGCCATACGATCCTTAAT
1 CGGTGGATCCACAGTCGTCAAGCAACCATACGATCCTCAAT
* * *
78659907 CGGTGGATCCACAGTCGTTAACCAACCATGCGATCCTCAAT
1 CGGTGGATCCACAGTCGTCAAGCAACCATACGATCCTCAAT
*
78659948 CGGTGGATCCACAGTTGTCAAGCAACCATACGATCCTCAAT
1 CGGTGGATCCACAGTCGTCAAGCAACCATACGATCCTCAAT
**
78659989 CGGTGGATCCACAGTCGTCAAGCAACCATGTGATCCTCAAT
1 CGGTGGATCCACAGTCGTCAAGCAACCATACGATCCTCAAT
78660030 TTCTTCCTCC
Statistics
Matches: 110, Mismatches: 13, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
41 110 1.00
ACGTcount: A:0.27, C:0.30, G:0.21, T:0.22
Consensus pattern (41 bp):
CGGTGGATCCACAGTCGTCAAGCAACCATACGATCCTCAAT
Found at i:78660319 original size:27 final size:27
Alignment explanation
Indices: 78660289--78660394 Score: 112
Period size: 27 Copynumber: 4.0 Consensus size: 27
78660279 GGTAAATCCA
78660289 CAAACCAAGGTTATTT-TGATAATTTTG
1 CAAACCAAGG-TATTTCTGATAATTTTG
78660316 CAAACCAAGGTATTTCTG-TAATTTTG
1 CAAACCAAGGTATTTCTGATAATTTTG
* * *
78660342 TAAATCAAGGGTATTTCT-ATAATTTTC
1 CAAACCAA-GGTATTTCTGATAATTTTG
* *
78660369 CAAATCAAAGGTATTTCAG-TAATTTT
1 CAAA-CCAAGGTATTTCTGATAATTTT
78660395 CTAAATCAGG
Statistics
Matches: 67, Mismatches: 7, Indels: 10
0.80 0.08 0.12
Matches are distributed among these distances:
26 19 0.28
27 46 0.69
28 2 0.03
ACGTcount: A:0.34, C:0.12, G:0.13, T:0.41
Consensus pattern (27 bp):
CAAACCAAGGTATTTCTGATAATTTTG
Found at i:78660364 original size:53 final size:54
Alignment explanation
Indices: 78660294--78660448 Score: 161
Period size: 54 Copynumber: 2.9 Consensus size: 54
78660284 ATCCACAAAC
* * * * *
78660294 CAAGGTTATTTTGATAATTTTGCAAA-CCAAGGTATTTCTGTAATTTTGTAAAT
1 CAAGGGTATTTTGATAATTTTCCAAATCAAAGGTATTTCAGTAATTTTCTAAAT
78660347 CAAGGGTATTTCT-ATAATTTTCCAAATCAAAGGTATTTCAGTAATTTTCTAAAT
1 CAAGGGTATTT-TGATAATTTTCCAAATCAAAGGTATTTCAGTAATTTTCTAAAT
* * * * * ** * *
78660401 CAGGGGTGTTTTGGTAATTTTACAGATTGAGGGTATTTTAGTAATTTT
1 CAAGGGTATTTTGATAATTTTCCAAATCAAAGGTATTTCAGTAATTTT
78660449 AGAGGGACCC
Statistics
Matches: 85, Mismatches: 14, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
53 23 0.27
54 62 0.73
ACGTcount: A:0.30, C:0.09, G:0.17, T:0.43
Consensus pattern (54 bp):
CAAGGGTATTTTGATAATTTTCCAAATCAAAGGTATTTCAGTAATTTTCTAAAT
Found at i:78660417 original size:27 final size:26
Alignment explanation
Indices: 78660294--78660448 Score: 109
Period size: 27 Copynumber: 5.8 Consensus size: 26
78660284 ATCCACAAAC
* *
78660294 CAAGGTTATTTTGATAATTTTGC-AAAC
1 CAAGGGTATTTTG-TAATTTT-CTAAAT
*
78660321 CAA-GGTATTTCTGTAATTTTGTAAAT
1 CAAGGGTATTT-TGTAATTTTCTAAAT
* *
78660347 CAAGGGTATTTCTATAATTTTCCAAAT
1 CAAGGGTATTT-TGTAATTTTCTAAAT
* *
78660374 CAAAGGTATTTCAGTAATTTTCTAAAT
1 CAAGGGTATTT-TGTAATTTTCTAAAT
* * *
78660401 CAGGGGTGTTTTGGTAATTTTAC-AGAT
1 CAAGGGTATTTT-GTAATTTT-CTAAAT
**
78660428 TGAGGGTATTTTAGTAATTTT
1 CAAGGGTATTTT-GTAATTTT
78660449 AGAGGGACCC
Statistics
Matches: 103, Mismatches: 20, Indels: 10
0.77 0.15 0.08
Matches are distributed among these distances:
26 19 0.18
27 83 0.81
28 1 0.01
ACGTcount: A:0.30, C:0.09, G:0.17, T:0.43
Consensus pattern (26 bp):
CAAGGGTATTTTGTAATTTTCTAAAT
Found at i:78662569 original size:80 final size:79
Alignment explanation
Indices: 78662485--78662656 Score: 220
Period size: 79 Copynumber: 2.2 Consensus size: 79
78662475 GGACTAAGAT
*
78662485 CCGAAGGCATTTGTGCGAGATA-CAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACT
1 CCGAAGGCATTTGTGCGAGATATCAAA-TCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACT
* *
78662549 AAATCCGGGTTAAGTC
64 AAAACCGGGCTAAGTC
* * * * * * *
78662565 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
*
78662630 AACCGGGCTATGTC
66 AACCGGGCTAAGTC
78662644 CCGAAGGCATTTG
1 CCGAAGGCATTTG
78662657 AACGAGGAGC
Statistics
Matches: 79, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
79 38 0.48
80 38 0.48
81 3 0.04
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
AACCGGGCTAAGTC
Found at i:78662636 original size:39 final size:39
Alignment explanation
Indices: 78662432--78662654 Score: 209
Period size: 40 Copynumber: 5.6 Consensus size: 39
78662422 TTGAATGCTG
* * * * *
78662432 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTA-AGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGA-T-ACTAAA
**
78662472 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATAC-AAA
1 TCCGGGTTAAG-TCCCGAAGGCA-TTGTGCGAGATACTAAA
* *
78662511 TTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
1 -TCCGGGTTAAGTCCCGAAGG-CATTGTGCGAGATACTAAA
* *
78662552 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGATACTAAA
* * *
78662592 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAA
* * *
78662631 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
78662655 TGAACGAGGA
Statistics
Matches: 157, Mismatches: 18, Indels: 17
0.82 0.09 0.09
Matches are distributed among these distances:
39 40 0.25
40 103 0.66
41 13 0.08
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAA
Found at i:78662674 original size:79 final size:80
Alignment explanation
Indices: 78662512--78662689 Score: 191
Period size: 79 Copynumber: 2.2 Consensus size: 80
78662502 AGATACAAAT
* * * *
78662512 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
** * *
78662577 GTGCGAGTTATTAAA
66 GAACGAGTGACTAAA
* * * * *
78662592 TCCGGGTTATGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
*
78662656 GAACGAG-GAGCTATA
66 GAACGAGTGA-CTAAA
*
78662671 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
78662690 TACGTGATTT
Statistics
Matches: 81, Mismatches: 16, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
78 15 0.19
79 48 0.59
80 18 0.22
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
GAACGAGTGACTAAA
Found at i:78668166 original size:39 final size:39
Alignment explanation
Indices: 78668114--78668284 Score: 202
Period size: 39 Copynumber: 4.3 Consensus size: 39
78668104 GGACTAAGAT
78668114 CCGAAGGCATTTGTGCGAGATACAAATTCCGGGTTAAG-C
1 CCGAAGGCATTTGTGCGAGATACAAA-TCCGGGTTAAGTC
*
78668153 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGATAC-AAATCCGGGTTAAGTC
* * * *
78668193 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTC
1 CCGAAGGCATTTGTGCGAGATA-CAAATCCGGGTTAAGTC
* * * * *
78668233 CCGAAGGCA-TTGTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTTGTGCGAGATAC-AAATCCGGGTTAAGTC
78668272 CCGAAGGCATTTG
1 CCGAAGGCATTTG
78668285 AACGAGGAGC
Statistics
Matches: 116, Mismatches: 11, Indels: 9
0.85 0.08 0.07
Matches are distributed among these distances:
39 66 0.57
40 50 0.43
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (39 bp):
CCGAAGGCATTTGTGCGAGATACAAATCCGGGTTAAGTC
Found at i:78668197 original size:79 final size:79
Alignment explanation
Indices: 78668061--78668284 Score: 222
Period size: 79 Copynumber: 2.8 Consensus size: 79
78668051 TTGAATGCTG
* * * * * * *
78668061 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTA-AGTGAATATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGA-T-ACTAAAACCGGGCTAAG-TCCCGAAGGCAT
78668124 TTGTGCGAGATA-CAAA
63 TTGTGCGAGATATCAAA
* * *
78668140 TTCCGGGTTAAG-CCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATT
1 -TCCGGGTTAAGTCCCGAAGG-CATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATT
* * *
78668204 CGTGCGAGTTATTAAA
64 TGTGCGAGATATCAAA
* * * *
78668220 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTTG
78668285 AACGAGGAGC
Statistics
Matches: 122, Mismatches: 17, Indels: 11
0.81 0.11 0.07
Matches are distributed among these distances:
78 1 0.01
79 89 0.73
80 31 0.25
81 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTTG
TGCGAGATATCAAA
Found at i:78668302 original size:79 final size:80
Alignment explanation
Indices: 78668141--78668317 Score: 191
Period size: 79 Copynumber: 2.2 Consensus size: 80
78668131 AGATACAAAT
* * *
78668141 TCCGGGTTAAG-CCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
** * *
78668205 GTGCGAGTTATTAAA
66 GAACGAGTGACTAAA
* * * * *
78668220 TCCGGGTTATGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
*
78668284 GAACGAG-GAGCTATA
66 GAACGAGTGA-CTAAA
*
78668299 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
78668318 TACGTGATTT
Statistics
Matches: 81, Mismatches: 15, Indels: 5
0.80 0.15 0.05
Matches are distributed among these distances:
78 15 0.19
79 58 0.72
80 8 0.10
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
GAACGAGTGACTAAA
Done.