Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 238 of 349
Found at i:78670035 original size:27 final size:26
Alignment explanation
Indices: 78669957--78670050 Score: 98
Period size: 27 Copynumber: 3.5 Consensus size: 26
78669947 TAATCGATTC
*
78669957 AATCAGGGATATTTTGGTAATTTTACA
1 AATCAGGG-TATTTTGGTAATTTTGCA
* * *
78669984 AAGCAGGGGTATTTTGATAATTTTGCT
1 AATCA-GGGTATTTTGGTAATTTTGCA
*
78670011 AATCGAGGGTATTTTGGTAATTTTGTA
1 AATC-AGGGTATTTTGGTAATTTTGCA
*
78670038 AACCAAGGGTATT
1 AATC-AGGGTATT
78670051 CAGTAATTCT
Statistics
Matches: 55, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
27 51 0.93
28 4 0.07
ACGTcount: A:0.30, C:0.07, G:0.23, T:0.39
Consensus pattern (26 bp):
AATCAGGGTATTTTGGTAATTTTGCA
Found at i:78670081 original size:27 final size:27
Alignment explanation
Indices: 78670049--78670123 Score: 98
Period size: 27 Copynumber: 2.8 Consensus size: 27
78670039 ACCAAGGGTA
78670049 TTCAGTAATTCTA-CCTTACAGGGGCAT
1 TTCAGTAATTCTATCC-TACAGGGGCAT
* *
78670076 TTCAGTAATTCTATCCTATAGGGGTAT
1 TTCAGTAATTCTATCCTACAGGGGCAT
* *
78670103 TTCAGTAATACTAGCCTACAG
1 TTCAGTAATTCTATCCTACAG
78670124 ATATGAGATT
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
27 40 0.95
28 2 0.05
ACGTcount: A:0.28, C:0.20, G:0.17, T:0.35
Consensus pattern (27 bp):
TTCAGTAATTCTATCCTACAGGGGCAT
Found at i:78671840 original size:32 final size:32
Alignment explanation
Indices: 78671804--78671868 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 32
78671794 CAGACAAAAA
78671804 TAACCCCGAAATAATTGGGCAGCACGTTGGCC
1 TAACCCCGAAATAATTGGGCAGCACGTTGGCC
*
78671836 TAACCCCGAAATACTTGGGCAGCACGTTGGCC
1 TAACCCCGAAATAATTGGGCAGCACGTTGGCC
78671868 T
1 T
78671869 TGTGTTATTC
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.26, C:0.29, G:0.25, T:0.20
Consensus pattern (32 bp):
TAACCCCGAAATAATTGGGCAGCACGTTGGCC
Found at i:78676450 original size:20 final size:20
Alignment explanation
Indices: 78676413--78676451 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
78676403 AAACACGCAA
**
78676413 TTAAAAAGAAAATTTAAAAT
1 TTAAAAAGAAAAACTAAAAT
*
78676433 TTAAAAATAAAAACTAAAA
1 TTAAAAAGAAAAACTAAAA
78676452 ACTAAAAGCA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.69, C:0.03, G:0.03, T:0.26
Consensus pattern (20 bp):
TTAAAAAGAAAAACTAAAAT
Found at i:78678104 original size:44 final size:42
Alignment explanation
Indices: 78678034--78678192 Score: 124
Period size: 43 Copynumber: 3.7 Consensus size: 42
78678024 TAGATGTTTC
* * *
78678034 CGTGTAAGACCACGTCTGGGATATTGGCATCG-ACTTATGATTT
1 CGTGTAAGACCATGTCTAGGACATTGGCATCGTA-TT-TGATTT
* *
78678077 ATGTGTAAGACCATGTCTATGACATTGGCATCGTATTTGATTT
1 -CGTGTAAGACCATGTCTAGGACATTGGCATCGTATTTGATTT
* * * * *
78678120 CGTGTAAGACCCTGTCTGGGATAGTGGCATCAATATTTG-TTT
1 CGTGTAAGACCATGTCTAGGACATTGGCATC-GTATTTGATTT
* ** * *
78678162 ACATGTAAGACCACATCTGGGACGTTGGCAT
1 -CGTGTAAGACCATGTCTAGGACATTGGCAT
78678193 TGTAGGAGCT
Statistics
Matches: 93, Mismatches: 19, Indels: 7
0.78 0.16 0.06
Matches are distributed among these distances:
42 28 0.30
43 35 0.38
44 29 0.31
45 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.33
Consensus pattern (42 bp):
CGTGTAAGACCATGTCTAGGACATTGGCATCGTATTTGATTT
Found at i:78678136 original size:42 final size:44
Alignment explanation
Indices: 78678034--78678150 Score: 116
Period size: 44 Copynumber: 2.7 Consensus size: 44
78678024 TAGATGTTTC
* *
78678034 CGTGTAAGACCAC-GTCTGGGATATTGGCATCGACTTATGATTTA
1 CGTGTAAGACC-CTGTCTAGGACATTGGCATCGACTTATGATTTA
* * *
78678078 TGTGTAAGACCATGTCTATGACATTGGCATCGTA-TT-TGATTT-
1 CGTGTAAGACCCTGTCTAGGACATTGGCATCG-ACTTATGATTTA
* * *
78678120 CGTGTAAGACCCTGTCTGGGATAGTGGCATC
1 CGTGTAAGACCCTGTCTAGGACATTGGCATC
78678151 AATATTTGTT
Statistics
Matches: 60, Mismatches: 11, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
42 25 0.42
43 6 0.10
44 28 0.47
45 1 0.02
ACGTcount: A:0.23, C:0.18, G:0.26, T:0.33
Consensus pattern (44 bp):
CGTGTAAGACCCTGTCTAGGACATTGGCATCGACTTATGATTTA
Found at i:78678426 original size:20 final size:21
Alignment explanation
Indices: 78678383--78678430 Score: 64
Period size: 20 Copynumber: 2.3 Consensus size: 21
78678373 AAAATGTGCT
78678383 ATATGTGTAAATGAATTGAGA
1 ATATGTGTAAATGAATTGAGA
*
78678404 ATATGTG-AAATGTATATGA-A
1 ATATGTGTAAATGAAT-TGAGA
78678424 ATATGTG
1 ATATGTG
78678431 GTATGAGAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
20 15 0.60
21 10 0.40
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (21 bp):
ATATGTGTAAATGAATTGAGA
Found at i:78699022 original size:43 final size:43
Alignment explanation
Indices: 78698936--78699048 Score: 133
Period size: 42 Copynumber: 2.7 Consensus size: 43
78698926 TATCGACTTA
*
78698936 TGATTTACGTGTAAGACCATGTCTGGGACATCGCCATCGTATT
1 TGATTTACGTGTAAGACCATGTCTGGGACATCGCCATCATATT
* * * *
78698979 TGATTT-CGTGTGAGACCCTGTTTGGGACAGT-GGCATCAATATT
1 TGATTTACGTGTAAGACCATGTCTGGGACA-TCGCCATC-ATATT
*
78699022 T-ATTTACATGTAAGACCATGTCTGGGA
1 TGATTTACGTGTAAGACCATGTCTGGGA
78699049 TGTTGGCATT
Statistics
Matches: 58, Mismatches: 9, Indels: 6
0.79 0.12 0.08
Matches are distributed among these distances:
42 29 0.50
43 29 0.50
ACGTcount: A:0.24, C:0.18, G:0.25, T:0.34
Consensus pattern (43 bp):
TGATTTACGTGTAAGACCATGTCTGGGACATCGCCATCATATT
Found at i:78699056 original size:43 final size:43
Alignment explanation
Indices: 78698936--78699057 Score: 117
Period size: 43 Copynumber: 2.9 Consensus size: 43
78698926 TATCGACTTA
* * *
78698936 TGATTTACGTGTAAGACCATGTCTGGGACA-TCGCCATCGTATT
1 TGATTTACGTGTAAGACCATGTCTGGGA-AGTTGGCATCATATT
* * *
78698979 TGATTT-CGTGTGAGACCCTGTTTGGGACAG-TGGCATCAATATT
1 TGATTTACGTGTAAGACCATGTCTGGGA-AGTTGGCATC-ATATT
* *
78699022 T-ATTTACATGTAAGACCATGTCTGGGATGTTGGCAT
1 TGATTTACGTGTAAGACCATGTCTGGGAAGTTGGCAT
78699058 TGTAAGAGCT
Statistics
Matches: 64, Mismatches: 11, Indels: 8
0.77 0.13 0.10
Matches are distributed among these distances:
42 30 0.47
43 34 0.53
ACGTcount: A:0.23, C:0.17, G:0.25, T:0.34
Consensus pattern (43 bp):
TGATTTACGTGTAAGACCATGTCTGGGAAGTTGGCATCATATT
Found at i:78702192 original size:26 final size:26
Alignment explanation
Indices: 78702163--78702214 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
78702153 AACGGCAATT
*
78702163 AAATGCTA-AATTTATATGCTGTTATG
1 AAATGCTAGAATTTATAT-ATGTTATG
*
78702189 AAATGTTAGAATTTATATATGTTATG
1 AAATGCTAGAATTTATATATGTTATG
78702215 GCCAAATATG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 14 0.61
27 9 0.39
ACGTcount: A:0.37, C:0.04, G:0.15, T:0.44
Consensus pattern (26 bp):
AAATGCTAGAATTTATATATGTTATG
Found at i:78702399 original size:44 final size:44
Alignment explanation
Indices: 78702349--78702446 Score: 178
Period size: 44 Copynumber: 2.2 Consensus size: 44
78702339 TATATGTGTG
78702349 CGAGTAAGACCATGGCATCGATATGTCATTCCGATATGTGTTTA
1 CGAGTAAGACCATGGCATCGATATGTCATTCCGATATGTGTTTA
**
78702393 CGAGTAAGAATATGGCATCGATATGTCATTCCGATATGTGTTTA
1 CGAGTAAGACCATGGCATCGATATGTCATTCCGATATGTGTTTA
78702437 CGAGTAAGAC
1 CGAGTAAGAC
78702447 TATGTTTGGG
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
44 51 1.00
ACGTcount: A:0.30, C:0.16, G:0.23, T:0.31
Consensus pattern (44 bp):
CGAGTAAGACCATGGCATCGATATGTCATTCCGATATGTGTTTA
Found at i:78705406 original size:60 final size:60
Alignment explanation
Indices: 78705327--78705547 Score: 169
Period size: 60 Copynumber: 3.7 Consensus size: 60
78705317 CGACTAATGG
* * * * * **
78705327 AAAGTGATTGCTTCAGCTATCGAATTATGAAAAGCGATGGTGACGACCATCGGA-CACTGA
1 AAAGAGATAGCTTCGGCTATCGAATTATGAAAAGCGATAGTGACAACCATCAAATCA-TGA
* * *
78705387 AAAGAGATAGCTTCGGCTATCAAAATTATGAAAAGGGATAGTGACAACCATCAAATTATGA
1 AAAGAGATAGCTTCGGCTATC-GAATTATGAAAAGCGATAGTGACAACCATCAAATCATGA
* * * * * ** * * *
78705448 AAA-AGGATAGCTTTGGCTATTGAATTATGAAAAGGGACAGCT-TCGGCTATCGAATTATGA
1 AAAGA-GATAGCTTCGGCTATCGAATTATGAAAAGCGATAG-TGACAACCATCAAATCATGA
* * * *
78705508 AAAGGGATAGTTTCAGCTATCGAATTATGAAAAGGGATAG
1 AAAGAGATAGCTTCGGCTATCGAATTATGAAAAGCGATAG
78705548 CTTCGACTAT
Statistics
Matches: 131, Mismatches: 25, Indels: 10
0.79 0.15 0.06
Matches are distributed among these distances:
60 82 0.63
61 48 0.37
62 1 0.01
ACGTcount: A:0.38, C:0.13, G:0.24, T:0.25
Consensus pattern (60 bp):
AAAGAGATAGCTTCGGCTATCGAATTATGAAAAGCGATAGTGACAACCATCAAATCATGA
Found at i:78705474 original size:30 final size:30
Alignment explanation
Indices: 78705384--78705612 Score: 219
Period size: 30 Copynumber: 7.6 Consensus size: 30
78705374 CATCGGACAC
* *
78705384 TGAAAAGAGATAGCTTCGGCTATCAAAATTA
1 TGAAAAGGGATAGCTTCGGCTATC-GAATTA
* ** * *
78705415 TGAAAAGGGATAG-TGACAACCATCAAATTA
1 TGAAAAGGGATAGCT-TCGGCTATCGAATTA
* * *
78705445 TGAAAAAGGATAGCTTTGGCTATTGAATTA
1 TGAAAAGGGATAGCTTCGGCTATCGAATTA
*
78705475 TGAAAAGGGACAGCTTCGGCTATCGAATTA
1 TGAAAAGGGATAGCTTCGGCTATCGAATTA
* *
78705505 TGAAAAGGGATAGTTTCAGCTATCGAATTA
1 TGAAAAGGGATAGCTTCGGCTATCGAATTA
*
78705535 TGAAAAGGGATAGCTTCGACTATCGAATTA
1 TGAAAAGGGATAGCTTCGGCTATCGAATTA
** * * *
78705565 TGAACTGAGTTAGCTTTGGCTATCG-ATTA
1 TGAAAAGGGATAGCTTCGGCTATCGAATTA
* * *
78705594 GTAAAAAGGAATAACTTCG
1 -TGAAAAGGGATAGCTTCG
78705613 TGTGAGATTC
Statistics
Matches: 158, Mismatches: 37, Indels: 7
0.78 0.18 0.03
Matches are distributed among these distances:
29 4 0.03
30 136 0.86
31 18 0.11
ACGTcount: A:0.38, C:0.12, G:0.23, T:0.28
Consensus pattern (30 bp):
TGAAAAGGGATAGCTTCGGCTATCGAATTA
Found at i:78705580 original size:90 final size:90
Alignment explanation
Indices: 78705384--78705590 Score: 261
Period size: 90 Copynumber: 2.3 Consensus size: 90
78705374 CATCGGACAC
*
78705384 TGAAAAGAGATAGCTTCGGCTATCAAAATTATGAAAAGGGATAGTGACAACCATCAAATTATGAA
1 TGAAAAGAGATAGCTTCGGCTATC-GAATTATGAAAAGGGATAGTGACAACCATCAAATTATGAA
* * *
78705449 AAAGGATAGCTTTGGCTATTGAATTA
65 AAAGGATAGCTTCGACTATCGAATTA
* * ** * * *
78705475 TGAAAAGGGACAGCTTCGGCTATCGAATTATGAAAAGGGATAGTTTCAGCTATCGAATTATGAAA
1 TGAAAAGAGATAGCTTCGGCTATCGAATTATGAAAAGGGATAGTGACAACCATCAAATTATGAAA
*
78705540 AGGGATAGCTTCGACTATCGAATTA
66 AAGGATAGCTTCGACTATCGAATTA
** * *
78705565 TGAACTGAGTTAGCTTTGGCTATCGA
1 TGAAAAGAGATAGCTTCGGCTATCGA
78705591 TTAGTAAAAA
Statistics
Matches: 98, Mismatches: 18, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
90 76 0.78
91 22 0.22
ACGTcount: A:0.37, C:0.13, G:0.23, T:0.28
Consensus pattern (90 bp):
TGAAAAGAGATAGCTTCGGCTATCGAATTATGAAAAGGGATAGTGACAACCATCAAATTATGAAA
AAGGATAGCTTCGACTATCGAATTA
Found at i:78772336 original size:47 final size:47
Alignment explanation
Indices: 78772267--78772651 Score: 680
Period size: 47 Copynumber: 8.1 Consensus size: 47
78772257 TATGAAATGA
78772267 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
78772314 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATG
78772363 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
78772410 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
78772457 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
78772504 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
78772551 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
* * * * * * * *
78772598 TGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
78772645 TGATAAG
1 TGATAAG
78772652 TCCCGAAGGG
Statistics
Matches: 326, Mismatches: 10, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
47 279 0.86
49 47 0.14
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
Found at i:78772825 original size:36 final size:37
Alignment explanation
Indices: 78772770--78772847 Score: 122
Period size: 36 Copynumber: 2.1 Consensus size: 37
78772760 CCGAGCTCTA
* *
78772770 AAGACCCGATGACTACGTGTGG-GATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
78772806 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
78772843 AAGAC
1 AAGAC
78772848 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
36 20 0.53
37 18 0.47
ACGTcount: A:0.24, C:0.19, G:0.31, T:0.26
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:78774730 original size:16 final size:16
Alignment explanation
Indices: 78774709--78774742 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
78774699 GCGGGCAATA
78774709 AGTGTTCACGATTGTG
1 AGTGTTCACGATTGTG
*
78774725 AGTGTTCACGGTTGTG
1 AGTGTTCACGATTGTG
78774741 AG
1 AG
78774743 ATTGGCACTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.18, C:0.12, G:0.35, T:0.35
Consensus pattern (16 bp):
AGTGTTCACGATTGTG
Found at i:78774780 original size:29 final size:29
Alignment explanation
Indices: 78774747--78774818 Score: 92
Period size: 29 Copynumber: 2.5 Consensus size: 29
78774737 TGTGAGATTG
* *
78774747 GCACTAAGTGTGCGGGCTTGAAA-TGCATA
1 GCACTAAGTGTGCGAG-TTGAAAGTACATA
* *
78774776 GCACTAAGTGTGCGAGTTTAAAGTACATG
1 GCACTAAGTGTGCGAGTTGAAAGTACATA
78774805 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
78774819 TGGTTGATTA
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
28 5 0.13
29 33 0.87
ACGTcount: A:0.28, C:0.17, G:0.31, T:0.25
Consensus pattern (29 bp):
GCACTAAGTGTGCGAGTTGAAAGTACATA
Found at i:78775220 original size:40 final size:39
Alignment explanation
Indices: 78775176--78775273 Score: 133
Period size: 39 Copynumber: 2.4 Consensus size: 39
78775166 CATATCCGAA
* *
78775176 CTAAGATCCGAAGGCATTTGTGCGAGATACTAATTCCGGG
1 CTAAG-TCCGAAGGCATTGGTGCGAGATACTAAATCCGGG
* *
78775216 CTAAGCCCGAAGGCATTGGTGCGAGTTACTAAATCCGGG
1 CTAAGTCCGAAGGCATTGGTGCGAGATACTAAATCCGGG
78775255 CTAAGTCCCGAAGAGCATT
1 CTAAGT-CCGAAG-GCATT
78775274 CATGCTAGTG
Statistics
Matches: 51, Mismatches: 5, Indels: 3
0.86 0.08 0.05
Matches are distributed among these distances:
39 35 0.69
40 11 0.22
41 5 0.10
ACGTcount: A:0.28, C:0.22, G:0.28, T:0.22
Consensus pattern (39 bp):
CTAAGTCCGAAGGCATTGGTGCGAGATACTAAATCCGGG
Found at i:78775293 original size:79 final size:79
Alignment explanation
Indices: 78775210--78775443 Score: 267
Period size: 79 Copynumber: 2.9 Consensus size: 79
78775200 AGATACTAAT
* *
78775210 TCCGGGCTAAGCCCGAAG-GCATTGGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGAGCATT
1 TCCGGGCTAAGCCCGAAGAGCATTCGTGCGAGTTA-TATATCCGGGCTAAGTCCCGAAGAGCATT
*
78775274 CATGCTAGTGATGTA
65 CATGCTAGTGATATA
* * * * * *
78775289 TCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCATT
1 TCCGGGCTAAG-CCCGAAGAGCATTCGTGCGAGTTATATATCCGGGCTAAGTCCCGAAGAGCATT
*
78775354 CGTGCTAGTGATATA
65 CATGCTAGTGATATA
* * * * *
78775369 TCCGTGCTAAACCCGAAGAGCATTCGTGCTG-GTGT-TATATCTGGGCTAGGTCCCGAAGAGCAA
1 TCCGGGCTAAGCCCGAAGAGCATTCGTGC-GAGT-TATATATCCGGGCTAAGTCCCGAAGAGCAT
*
78775432 TCATGCTGGTGA
64 TCATGCTAGTGA
78775444 CGTGTATTCG
Statistics
Matches: 128, Mismatches: 23, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
79 62 0.48
80 54 0.42
81 12 0.09
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (79 bp):
TCCGGGCTAAGCCCGAAGAGCATTCGTGCGAGTTATATATCCGGGCTAAGTCCCGAAGAGCATTC
ATGCTAGTGATATA
Found at i:78775384 original size:119 final size:119
Alignment explanation
Indices: 78775210--78775443 Score: 292
Period size: 119 Copynumber: 2.0 Consensus size: 119
78775200 AGATACTAAT
* * *
78775210 TCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGAGCATTC
1 TCCGGGCTAAGCCCGAAGGCATTCGTGCGAGTGACTAAATCCGGGCTAAGACCCGAAGAGCATTC
* * *
78775275 ATGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGTGATGTA
66 ATGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCAATCATGCTAGTGATGTA
* * * *
78775329 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGA-TATATCCGTGCTAA-ACCCGAAGAGCAT
1 TCCGGGCTAAG-CCCGAAG-GCATTCGTGCGAGTGACTAAATCCGGGCTAAGACCCGAAGAGCAT
* * * * * *
78775392 TCGTGCTGGTGTTATATCTGGGCTAGGTCCCGAAGAGCAATCATGCTGGTGA
64 TCATGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCAATCATGCTAGTGA
78775444 CGTGTATTCG
Statistics
Matches: 97, Mismatches: 16, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
119 66 0.68
120 18 0.19
121 13 0.13
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (119 bp):
TCCGGGCTAAGCCCGAAGGCATTCGTGCGAGTGACTAAATCCGGGCTAAGACCCGAAGAGCATTC
ATGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCAATCATGCTAGTGATGTA
Found at i:78775396 original size:39 final size:40
Alignment explanation
Indices: 78775130--78775430 Score: 278
Period size: 40 Copynumber: 7.6 Consensus size: 40
78775120 TCGAATGATG
* *
78775130 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCT-AGTGA-TATA
** * *
78775170 TCCGAACTAAGAT-CCGAAG-GCATTTGTGC--GAGATACTAA
1 TCCGGGCTAAG-TCCCGAAGAGCATTCGTGCTAGTGATA-T-A
* * * *
78775209 TTCCGGGCTAAG-CCCGAAG-GCATTGGTGCGAGTTACTAAA
1 -TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGA-TATA
* *
78775249 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
* * *
78775289 TCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
*
78775329 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
* * * *
78775369 TCCGTGCTAA-ACCCGAAGAGCATTCGTGCTGGTGTTATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
* *
78775408 TCTGGGCTAGGTCCCGAAGAGCA
1 TCCGGGCTAAGTCCCGAAGAGCA
78775431 ATCATGCTGG
Statistics
Matches: 221, Mismatches: 28, Indels: 24
0.81 0.10 0.09
Matches are distributed among these distances:
37 1 0.00
38 4 0.02
39 59 0.27
40 133 0.60
41 22 0.10
42 2 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
Found at i:78779093 original size:46 final size:47
Alignment explanation
Indices: 78778910--78779387 Score: 795
Period size: 47 Copynumber: 10.1 Consensus size: 47
78778900 TATGAAATGA
78778910 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
78778957 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATG
78779006 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
78779053 TGATAAGGCCTAATGGCCG-TGTGATGAATGTGAAAGTGTATATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATG
78779101 TGAT-AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
78779147 TGAT-AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
78779193 TGAT-AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
78779239 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
78779286 TGATAAGGCCTAATGGCCGATGTGATGAATGTG-AAGTGTATATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATG
* * * * * * * *
78779334 TGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
78779381 TGATAAG
1 TGATAAG
78779388 TCCCGAAGGG
Statistics
Matches: 412, Mismatches: 10, Indels: 18
0.94 0.02 0.04
Matches are distributed among these distances:
46 128 0.31
47 167 0.41
48 65 0.16
49 52 0.13
ACGTcount: A:0.31, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
Found at i:78779579 original size:36 final size:37
Alignment explanation
Indices: 78779506--78779583 Score: 95
Period size: 37 Copynumber: 2.1 Consensus size: 37
78779496 CCGAGCTCTA
* * * * *
78779506 AAGACCTGATGACTACGTTTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
78779543 AAGACCCGATAACTTCGTGTGGAGATTATGT-CGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
78779579 AAGAC
1 AAGAC
78779584 TTCGTAATAA
Statistics
Matches: 35, Mismatches: 6, Indels: 1
0.83 0.14 0.02
Matches are distributed among these distances:
36 10 0.29
37 25 0.71
ACGTcount: A:0.24, C:0.17, G:0.31, T:0.28
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:78784330 original size:44 final size:48
Alignment explanation
Indices: 78784231--78784331 Score: 131
Period size: 44 Copynumber: 2.2 Consensus size: 48
78784221 ATGCCGACGT
* *
78784231 CATGTCCCAGACATGGTCTTACACTGGCTAGCACATCAAAGTCGATGC
1 CATGTCCCAGACATGGTCTTACACTGACTAGCACAACAAAGTCGATGC
*
78784279 CATGTCCCAGAC-TGGTCTTACACTGAC-A-CTCAAC-AAG-CTGATGC
1 CATGTCCCAGACATGGTCTTACACTGACTAGCACAACAAAGTC-GATGC
78784323 CATGTCCCA
1 CATGTCCCA
78784332 AACTATTCTT
Statistics
Matches: 49, Mismatches: 3, Indels: 6
0.84 0.05 0.10
Matches are distributed among these distances:
43 1 0.02
44 17 0.35
45 4 0.08
46 1 0.02
47 14 0.29
48 12 0.24
ACGTcount: A:0.27, C:0.32, G:0.19, T:0.23
Consensus pattern (48 bp):
CATGTCCCAGACATGGTCTTACACTGACTAGCACAACAAAGTCGATGC
Found at i:78784429 original size:46 final size:45
Alignment explanation
Indices: 78784379--78784486 Score: 114
Period size: 46 Copynumber: 2.4 Consensus size: 45
78784369 TGCATGTTGT
78784379 AGACATGTCTTACACTAGCTCTTGTC-TCAA-T-GCCAATGCATGTCCC
1 AGACATGTCTTACACTAGCTC---TCAT-AAGTGGCCAATGCATGTCCC
* * * *
78784425 AGACATTTCTTACATTGGCTCTCATAATGTGGCCAATGCATGTCCT
1 AGACATGTCTTACACTAGCTCTCATAA-GTGGCCAATGCATGTCCC
78784471 AGACATGTCTTACACT
1 AGACATGTCTTACACT
78784487 TGCACACATA
Statistics
Matches: 52, Mismatches: 6, Indels: 8
0.79 0.09 0.12
Matches are distributed among these distances:
43 4 0.08
44 1 0.02
45 1 0.02
46 46 0.88
ACGTcount: A:0.25, C:0.27, G:0.16, T:0.32
Consensus pattern (45 bp):
AGACATGTCTTACACTAGCTCTCATAAGTGGCCAATGCATGTCCC
Found at i:78792850 original size:20 final size:20
Alignment explanation
Indices: 78792825--78792864 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
78792815 GAGGGGAGAG
78792825 TTGTAACATCCCAAATTAGA
1 TTGTAACATCCCAAATTAGA
78792845 TTGTAACATCCCAAATTAGA
1 TTGTAACATCCCAAATTAGA
78792865 GCCAAGTTAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.40, C:0.20, G:0.10, T:0.30
Consensus pattern (20 bp):
TTGTAACATCCCAAATTAGA
Found at i:78800645 original size:40 final size:40
Alignment explanation
Indices: 78800571--78800752 Score: 269
Period size: 40 Copynumber: 4.6 Consensus size: 40
78800561 AACCCAAGTA
* * * *
78800571 CCTTCAGGATTTAG-CCGGATATAG-CAAGTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
* *
78800610 CCTTCCGGTCTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
78800650 CCTTCGGGACTTAGCCTGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
78800690 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
78800730 CCTTCGGGACTTAGCCAGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
78800753 CATTCGAATA
Statistics
Matches: 131, Mismatches: 10, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
39 11 0.08
40 119 0.91
41 1 0.01
ACGTcount: A:0.27, C:0.26, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:78803615 original size:1 final size:1
Alignment explanation
Indices: 78803609--78803653 Score: 81
Period size: 1 Copynumber: 45.0 Consensus size: 1
78803599 CTAAACTTTA
*
78803609 GGGGGGGGGGGGGGGGGGGGGGGGGTGGGGGGGGGGGGGGGGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
78803654 TGAAAGCAAA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
1 42 1.00
ACGTcount: A:0.00, C:0.00, G:0.98, T:0.02
Consensus pattern (1 bp):
G
Found at i:78823171 original size:40 final size:40
Alignment explanation
Indices: 78823127--78823298 Score: 222
Period size: 40 Copynumber: 4.3 Consensus size: 40
78823117 GGACTAAGAT
*
78823127 CCGAAGGCATTTGTGCGAGATAC-AAATTCCGGGTTAAGCC
1 CCGAAGGCATTTGTGCGAGATACTAAA-TCCGGGTTAAGTC
*
78823167 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGATACTAAATCCGGGTTAAGTC
* * * *
78823207 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTC
1 CCGAAGGCATTTGTGCGAGATACTAAATCCGGGTTAAGTC
* * * * *
78823247 CCGAAGGCA-TTGTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTTGTGCGAGATACTAAATCCGGGTTAAGTC
78823286 CCGAAGGCATTTG
1 CCGAAGGCATTTG
78823299 AACGAGGAGC
Statistics
Matches: 118, Mismatches: 12, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
39 34 0.29
40 81 0.69
41 3 0.03
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGATACTAAATCCGGGTTAAGTC
Found at i:78823212 original size:80 final size:79
Alignment explanation
Indices: 78823127--78823298 Score: 220
Period size: 79 Copynumber: 2.2 Consensus size: 79
78823117 GGACTAAGAT
*
78823127 CCGAAGGCATTTGTGCGAGATA-CAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACT
1 CCGAAGGCATTTGTGCGAGATATCAAA-TCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACT
* *
78823191 AAATCCGGGTTAAGTC
64 AAAACCGGGCTAAGTC
* * * * * * *
78823207 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
*
78823272 AACCGGGCTATGTC
66 AACCGGGCTAAGTC
78823286 CCGAAGGCATTTG
1 CCGAAGGCATTTG
78823299 AACGAGGAGC
Statistics
Matches: 79, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
79 38 0.48
80 38 0.48
81 3 0.04
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
AACCGGGCTAAGTC
Found at i:78823316 original size:79 final size:80
Alignment explanation
Indices: 78823154--78823331 Score: 191
Period size: 79 Copynumber: 2.2 Consensus size: 80
78823144 AGATACAAAT
* * * *
78823154 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
** * *
78823219 GTGCGAGTTATTAAA
66 GAACGAGTGACTAAA
* * * * *
78823234 TCCGGGTTATGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
*
78823298 GAACGAG-GAGCTATA
66 GAACGAGTGA-CTAAA
*
78823313 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
78823332 TACGTGATTT
Statistics
Matches: 81, Mismatches: 16, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
78 15 0.19
79 48 0.59
80 18 0.22
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
GAACGAGTGACTAAA
Found at i:78825215 original size:25 final size:25
Alignment explanation
Indices: 78825186--78825233 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
78825176 TTATAACATG
* * *
78825186 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
78825211 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
78825234 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:78825317 original size:11 final size:11
Alignment explanation
Indices: 78825281--78825336 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
78825271 CATGGTATGT
78825281 ATGATATGCAC
1 ATGATATGCAC
* *
78825292 ATGACATG--T
1 ATGATATGCAC
78825301 ATGATATGCAC
1 ATGATATGCAC
*
78825312 ATGATATG--T
1 ATGATATGCAC
78825321 ATGATATGCAC
1 ATGATATGCAC
78825332 ATGAT
1 ATGAT
78825337 GTAATCACAA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:78825336 original size:20 final size:20
Alignment explanation
Indices: 78825270--78825336 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
78825260 ATTTAGATAA
*
78825270 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
*
78825290 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
78825310 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
78825330 ACATGAT
1 ACATGAT
78825337 GTAATCACAA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.34, C:0.12, G:0.21, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:78825483 original size:46 final size:47
Alignment explanation
Indices: 78825385--78825504 Score: 208
Period size: 45 Copynumber: 2.6 Consensus size: 47
78825375 GGAGGAAGTG
*
78825385 TAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCTCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
78825432 T-AAAGGGCTTATG-CCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
*
78825477 TAAAAGGGCTTTTGCCCCAGTTATTAAA
1 TAAAAGGGCTTATGCCCCAGTTATTAAA
78825505 AGAGGCTAGG
Statistics
Matches: 69, Mismatches: 2, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
45 32 0.46
46 23 0.33
47 14 0.20
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.32
Consensus pattern (47 bp):
TAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
Found at i:78825506 original size:24 final size:23
Alignment explanation
Indices: 78825387--78825504 Score: 202
Period size: 23 Copynumber: 5.1 Consensus size: 23
78825377 AGGAAGTGTA
78825387 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
78825410 AAAGGGCTTATGCCTCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
78825433 AAAGGGCTTATG-CCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
78825455 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
78825478 AAAAGGGCTTTTGCCCCAGTTATT
1 -AAAGGGCTTATGCCCCAGTTATT
78825502 AAA
1 AAA
78825505 AGAGGCTAGG
Statistics
Matches: 90, Mismatches: 3, Indels: 4
0.93 0.03 0.04
Matches are distributed among these distances:
22 21 0.23
23 47 0.52
24 22 0.24
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.31
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:78825757 original size:31 final size:31
Alignment explanation
Indices: 78825719--78825782 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
78825709 CGTTTACAGT
78825719 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
78825750 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
78825781 AA
1 AA
78825783 TATGAAAAGG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.38, C:0.16, G:0.23, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:78827684 original size:99 final size:100
Alignment explanation
Indices: 78827566--78827756 Score: 294
Period size: 99 Copynumber: 1.9 Consensus size: 100
78827556 AGCCGAAGCT
* * *
78827566 ATCTGATACGCATAGTAGCCTGCACTTAGTACTACACATGCGAC-CAACAATCCGGTATACGTAG
1 ATCTGATACACATAGTAGCCTGCACTTAGTACTACACATGCGACTCAACAATACGGTACACGTAG
78827630 TAGCCTGCACTTAGTACTACACACGTGACCTCACC
66 TAGCCTGCACTTAGTACTACACACGTGACCTCACC
* * ** *
78827665 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACATGCGACTTAACTGTATGGTACACGTAG
1 ATCTGATACACATAGTAGCCTGCACTTAGTACTACACATGCGACTCAACAATACGGTACACGTAG
*
78827730 TAGCCTGCGCTTAGTACTACACACGTG
66 TAGCCTGCACTTAGTACTACACACGTG
78827757 TACTCACAAT
Statistics
Matches: 82, Mismatches: 9, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
99 42 0.51
100 40 0.49
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (100 bp):
ATCTGATACACATAGTAGCCTGCACTTAGTACTACACATGCGACTCAACAATACGGTACACGTAG
TAGCCTGCACTTAGTACTACACACGTGACCTCACC
Found at i:78827699 original size:50 final size:50
Alignment explanation
Indices: 78827566--78827754 Score: 227
Period size: 50 Copynumber: 3.8 Consensus size: 50
78827556 AGCCGAAGCT
* * *
78827566 ATCTGATACGCATAGTAGCCTGCACTTAGTACTACACATGCGACC-AACA
1 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCTAACA
* * * * * *
78827615 ATCCGGTATACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTCACC
1 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCTAACA
* * *
78827665 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACATGCGACTTAACT
1 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCTAACA
* * * *
78827715 GTATGGTACACGTAGTAGCCTGCGCTTAGTACTACACACG
1 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACG
78827755 TGTACTCACA
Statistics
Matches: 117, Mismatches: 22, Indels: 1
0.84 0.16 0.01
Matches are distributed among these distances:
49 38 0.32
50 79 0.68
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.25
Consensus pattern (50 bp):
ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCTAACA
Found at i:78835124 original size:50 final size:49
Alignment explanation
Indices: 78835003--78835190 Score: 191
Period size: 50 Copynumber: 3.8 Consensus size: 49
78834993 AGCCGAAGCT
* * * *
78835003 ATCTGATACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAACA
1 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAACA
* * * * *
78835052 ATCCGGTACACGTAGTAGCCTGCATTTAGTACTACACACGTGACCTCACC
1 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC-AACA
* **
78835102 ATCTGATACACGTAGTAGCCTGCAGTTAGTACTACACACGTGATGGAAGTC-
1 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA--CA
* *
78835153 AT-TGAGTACGCATAGTAGCCTGCACTTAGTACTACACA
1 ATCTGA-TACACGTAGTAGCCTGCACTTAGTACTACACA
78835191 TGCAACTTAG
Statistics
Matches: 116, Mismatches: 18, Indels: 8
0.82 0.13 0.06
Matches are distributed among these distances:
49 38 0.33
50 46 0.40
51 31 0.27
52 1 0.01
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.24
Consensus pattern (49 bp):
ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAACA
Found at i:78840367 original size:17 final size:17
Alignment explanation
Indices: 78840345--78840386 Score: 52
Period size: 16 Copynumber: 2.6 Consensus size: 17
78840335 CACAAATCAG
*
78840345 ATATAATATACTTTTAA
1 ATATAATATACATTTAA
*
78840362 ATATAA-ACACATTTAA
1 ATATAATATACATTTAA
78840378 ATA-AATATA
1 ATATAATATA
78840387 TATAATAAGC
Statistics
Matches: 21, Mismatches: 3, Indels: 3
0.78 0.11 0.11
Matches are distributed among these distances:
15 2 0.10
16 13 0.62
17 6 0.29
ACGTcount: A:0.55, C:0.07, G:0.00, T:0.38
Consensus pattern (17 bp):
ATATAATATACATTTAA
Found at i:78840968 original size:32 final size:32
Alignment explanation
Indices: 78840925--78840985 Score: 104
Period size: 32 Copynumber: 1.9 Consensus size: 32
78840915 ATCATACTTT
*
78840925 GTTTCTTAATCATTTAAAGAAATTAATATTTA
1 GTTTCTCAATCATTTAAAGAAATTAATATTTA
*
78840957 GTTTCTCAATCATTTAAAGAAATTGATAT
1 GTTTCTCAATCATTTAAAGAAATTAATAT
78840986 ATTCATTTTC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
32 27 1.00
ACGTcount: A:0.39, C:0.08, G:0.08, T:0.44
Consensus pattern (32 bp):
GTTTCTCAATCATTTAAAGAAATTAATATTTA
Found at i:78843788 original size:46 final size:47
Alignment explanation
Indices: 78843684--78843803 Score: 152
Period size: 46 Copynumber: 2.6 Consensus size: 47
78843674 TGTCTTCGAC
** * *
78843684 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATATATAAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCA-ATATATATAAT
* * *
78843732 ATGGGCTTACATGGCTCATTCCTGTCTCCAAAGCC-ATATATCTGAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATATAAT
*
78843778 ATGGACTTACATGGCTCATTTCTGTC
1 ATGGACTTACATGGCTCATTCCTGTC
78843804 CTGTCCTGTC
Statistics
Matches: 63, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
46 33 0.52
48 30 0.48
ACGTcount: A:0.27, C:0.23, G:0.15, T:0.36
Consensus pattern (47 bp):
ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATATAAT
Found at i:78856445 original size:23 final size:23
Alignment explanation
Indices: 78856414--78856465 Score: 79
Period size: 23 Copynumber: 2.3 Consensus size: 23
78856404 CTATTCGAAG
78856414 CTTCCCGATAAGGTT-TTTGTAAA
1 CTTCCCGATAA-GTTCTTTGTAAA
*
78856437 CTTCTCGATAAGTTCTTTGTAAA
1 CTTCCCGATAAGTTCTTTGTAAA
78856460 CTTCCC
1 CTTCCC
78856466 AATTATGGCC
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
22 3 0.12
23 23 0.88
ACGTcount: A:0.23, C:0.23, G:0.13, T:0.40
Consensus pattern (23 bp):
CTTCCCGATAAGTTCTTTGTAAA
Found at i:78858951 original size:184 final size:183
Alignment explanation
Indices: 78858629--78858974 Score: 566
Period size: 184 Copynumber: 1.9 Consensus size: 183
78858619 ACAGAAAAAA
* * * *
78858629 TTCAGAAAGAAAGACATTAGTCAGAAATTTCTAGATCATAAAAAGAAAGAATTTTTATAGCTCAA
1 TTCAGAAAAAAAGACATTAGTAAAAAATTTCTAGATCAGAAAAAGAAAGAATTTTTATAGCTCAA
* **
78858694 ACAAGGAAACATGACTGTATCTGAATACGAGGGAGAATTTGTTTGGTTGAGCAAATATGCCAGAG
66 ACAAGGAAACATGACTGTATCTAAATACGAGGGAGAATTTGTTCAGTTGAGCAAATATGCCAGAG
*
78858759 AATGGGTTCTGACTGAGGCTGATATGTGTAAACATTTCAAAGTTTAGACAAAT
131 AATGGGTTCTGACTAAGGCTGATATGTGTAAACATTTCAAAGTTTAGACAAAT
*
78858812 TTCAGAAAAAAAGTACATTAGTAAAAAATTTCTAGATCAGAAAAATAAAGAATTTTTATAGCTCA
1 TTCAGAAAAAAAG-ACATTAGTAAAAAATTTCTAGATCAGAAAAAGAAAGAATTTTTATAGCTCA
* * * *
78858877 AATAGGGAAACATGACTGTATCTAAATATGAGTGAGAATTTGTTCAGTTGAGCAAATATGCCAGA
65 AACAAGGAAACATGACTGTATCTAAATACGAGGGAGAATTTGTTCAGTTGAGCAAATATGCCAGA
78858942 GAATGGGTTCTGACTAAGGCTGATATGTGTAAA
130 GAATGGGTTCTGACTAAGGCTGATATGTGTAAA
78858975 TGTTTCGAAG
Statistics
Matches: 149, Mismatches: 13, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
183 12 0.08
184 137 0.92
ACGTcount: A:0.40, C:0.11, G:0.21, T:0.28
Consensus pattern (183 bp):
TTCAGAAAAAAAGACATTAGTAAAAAATTTCTAGATCAGAAAAAGAAAGAATTTTTATAGCTCAA
ACAAGGAAACATGACTGTATCTAAATACGAGGGAGAATTTGTTCAGTTGAGCAAATATGCCAGAG
AATGGGTTCTGACTAAGGCTGATATGTGTAAACATTTCAAAGTTTAGACAAAT
Found at i:78873471 original size:12 final size:11
Alignment explanation
Indices: 78873449--78873503 Score: 60
Period size: 12 Copynumber: 5.0 Consensus size: 11
78873439 TCGATCATTG
78873449 ACTTTTA-TTT
1 ACTTTTATTTT
*
78873459 AGTTTTATATTT
1 ACTTTTAT-TTT
*
78873471 AATTTT-TTTT
1 ACTTTTATTTT
78873481 ACTTTTACTTTT
1 ACTTTTA-TTTT
78873493 ACTTTTATTTT
1 ACTTTTATTTT
78873504 TATTGTTATT
Statistics
Matches: 38, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
10 14 0.37
11 5 0.13
12 19 0.50
ACGTcount: A:0.20, C:0.07, G:0.02, T:0.71
Consensus pattern (11 bp):
ACTTTTATTTT
Found at i:78873498 original size:22 final size:22
Alignment explanation
Indices: 78873449--78873503 Score: 58
Period size: 22 Copynumber: 2.5 Consensus size: 22
78873439 TCGATCATTG
* *
78873449 ACTTTTATTTAGTTTTATATTT
1 ACTTTTTTTTACTTTTATATTT
*
78873471 AATTTTTTTTACTTTTACT-TTT
1 ACTTTTTTTTACTTTTA-TATTT
78873493 ACTTTTATTTT
1 ACTTTT-TTTT
78873504 TATTGTTATT
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
22 22 0.81
23 5 0.19
ACGTcount: A:0.20, C:0.07, G:0.02, T:0.71
Consensus pattern (22 bp):
ACTTTTTTTTACTTTTATATTT
Found at i:78873504 original size:12 final size:12
Alignment explanation
Indices: 78873476--78873514 Score: 53
Period size: 12 Copynumber: 3.2 Consensus size: 12
78873466 TATTTAATTT
78873476 TTTTTACTTTTA
1 TTTTTACTTTTA
*
78873488 CTTTTACTTTTA
1 TTTTTACTTTTA
78873500 TTTTTA-TTGTTA
1 TTTTTACTT-TTA
78873512 TTT
1 TTT
78873515 GTTTTTGTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
11 2 0.08
12 22 0.92
ACGTcount: A:0.15, C:0.08, G:0.03, T:0.74
Consensus pattern (12 bp):
TTTTTACTTTTA
Found at i:78875659 original size:32 final size:32
Alignment explanation
Indices: 78875623--78875686 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
78875613 TTACACAATA
78875623 AATATTTAGTTTTTTGTTCTCAATTATGTGTG
1 AATATTTAGTTTTTTGTTCTCAATTATGTGTG
78875655 AATATTTAGTTTTTTGTTCTCAATTATGTGTG
1 AATATTTAGTTTTTTGTTCTCAATTATGTGTG
78875687 TTTAATTCTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.22, C:0.06, G:0.16, T:0.56
Consensus pattern (32 bp):
AATATTTAGTTTTTTGTTCTCAATTATGTGTG
Found at i:78878174 original size:73 final size:73
Alignment explanation
Indices: 78878054--78878443 Score: 324
Period size: 73 Copynumber: 5.3 Consensus size: 73
78878044 CATCCTTTAG
* * * * *
78878054 TAGTCTACTGGGACAGTAAACATGAGGTTGTATTGTGTAAGACCATAGCTAAAATATGCTACGAC
1 TAGTCTGCTGGGATAGTAAACACGAGGTTATATTGTGTAAGACCATAGCTAAAAGATGCTACGAC
78878119 ATCATAGA
66 ATCATAGA
* * * * * * * *
78878127 TAGTCTGCTGGGATAATAAACAAG-GGATTATATTATGTAAGATCATAGCCAAAAGATGTTATGG
1 TAGTCTGCTGGGATAGTAAACACGAGG-TTATATTGTGTAAGACCATAGCTAAAAGATGCTACGA
*
78878191 CATCATAAA
65 CATCATAGA
* * * *** **
78878200 TAGTCT-ATCGGGATAGTAAACACGAGGTTATATTGTGTAAGACCATAGTTGAAAGACAATATAA
1 TAGTCTGCT-GGGATAGTAAACACGAGGTTATATTGTGTAAGACCATAGCTAAAAGATGCTACGA
78878264 CATCATAGA
65 CATCATAGA
* * *
78878273 TAGTTTGTCAT--GACAGTAAACACGAGGCTATATTGTGTAAGACCATAGCTAAAAGATGCTACG
1 TAGTCTG-C-TGGGATAGTAAACACGAGGTTATATTGTGTAAGACCATAGCTAAAAGATGCTACG
*
78878336 ACATCATAGG
64 ACATCATAGA
** * * * * * * *
78878346 TAGTCCACTGGGTTAGCAAACATGGGGTTATATTGAGTAAAACCATAGCTGGAAAGACT-CTACG
1 TAGTCTGCTGGGATAGTAAACACGAGGTTATATTGTGTAAGACCATAGCT-AAAAGA-TGCTACG
*
78878410 ACATTATAGA
64 ACATCATAGA
* * *
78878420 TAATCTG-TCGGAACAGTAAACACG
1 TAGTCTGCT-GGGATAGTAAACACG
78878444 GTAATTTTGA
Statistics
Matches: 245, Mismatches: 61, Indels: 21
0.75 0.19 0.06
Matches are distributed among these distances:
71 1 0.00
72 4 0.02
73 204 0.83
74 34 0.14
75 1 0.00
76 1 0.00
ACGTcount: A:0.37, C:0.15, G:0.22, T:0.27
Consensus pattern (73 bp):
TAGTCTGCTGGGATAGTAAACACGAGGTTATATTGTGTAAGACCATAGCTAAAAGATGCTACGAC
ATCATAGA
Found at i:78878931 original size:42 final size:41
Alignment explanation
Indices: 78878872--78879025 Score: 139
Period size: 42 Copynumber: 3.7 Consensus size: 41
78878862 CGAGACTATG
* *
78878872 TGTAAGACCACATCTGGGATATGGCATCATTATGAGATTTCA
1 TGTAAGAACATATCTGGGATATGGCATCA-TATGAGATTTCA
* * *
78878914 TGTAAGAACATATCTGGGATATGGCATAGATATGATATTTCG
1 TGTAAGAACATATCTGGGATATGGCAT-CATATGAGATTTCA
* * * * **
78878956 TGTAA-AACCATAACTGGGCTATTAGCATCGATACGAGATCCCA
1 TGTAAGAA-CATATCTGGGATA-TGGCATC-ATATGAGATTTCA
* *
78878999 TGTAAGACCATATTTGGGATATGGCAT
1 TGTAAGAACATATCTGGGATATGGCAT
78879026 TGGTGTAGTA
Statistics
Matches: 88, Mismatches: 19, Indels: 10
0.75 0.16 0.09
Matches are distributed among these distances:
41 2 0.02
42 56 0.64
43 29 0.33
44 1 0.01
ACGTcount: A:0.32, C:0.16, G:0.22, T:0.30
Consensus pattern (41 bp):
TGTAAGAACATATCTGGGATATGGCATCATATGAGATTTCA
Found at i:78888744 original size:27 final size:27
Alignment explanation
Indices: 78888714--78888890 Score: 169
Period size: 27 Copynumber: 6.6 Consensus size: 27
78888704 ATATTGAGTC
* *
78888714 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
78888741 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
78888768 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
78888796 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
78888823 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * *
78888850 CGCACACTTAGTGCAACATAGT-AAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
78888876 CGCACACATAGTGCT
1 CGCACACTTAGTGCT
78888891 GTACAATTTA
Statistics
Matches: 127, Mismatches: 20, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
26 15 0.12
27 88 0.69
28 24 0.19
ACGTcount: A:0.31, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:78888806 original size:55 final size:54
Alignment explanation
Indices: 78888714--78888890 Score: 196
Period size: 55 Copynumber: 3.3 Consensus size: 54
78888704 ATATTGAGTC
* * * * *
78888714 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCAACATAGTCAAAT
* ** * *
78888768 CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATC-AACTCGCACACTTAGTGCAACATAGTCAAAT
* **
78888823 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGT-AAAT
1 CGCACACTTAGTGCTA-CATAATCAACTCGCACACTTAGTGCAACATAGTCAAAT
*
78888876 CGCACACATAGTGCT
1 CGCACACTTAGTGCT
78888891 GTACAATTTA
Statistics
Matches: 103, Mismatches: 17, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
53 16 0.16
54 42 0.41
55 45 0.44
ACGTcount: A:0.31, C:0.28, G:0.15, T:0.27
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCAACATAGTCAAAT
Found at i:78888853 original size:82 final size:80
Alignment explanation
Indices: 78888735--78888889 Score: 213
Period size: 82 Copynumber: 1.9 Consensus size: 80
78888725 TGCTATATAA
* *
78888735 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGT-AAA-TCGCA
*
78888800 CACTTAGTGCCGCATGG
64 CACATAGTGCCGCATGG
* * **
78888817 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTAAATCGCAC
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTAAATCGCAC
78888881 ACATAGTGC
65 ACATAGTGC
78888890 TGTACAATTT
Statistics
Matches: 65, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
80 14 0.22
81 4 0.06
82 47 0.72
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.26
Consensus pattern (80 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTAAATCGCACA
CATAGTGCCGCATGG
Found at i:78897630 original size:40 final size:40
Alignment explanation
Indices: 78897575--78897800 Score: 402
Period size: 40 Copynumber: 5.7 Consensus size: 40
78897565 GAGCATTGGA
78897575 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
78897615 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
78897655 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
78897695 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGATG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
78897735 --ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* *
78897773 ATATGTCCGGGTTAAGACCCGAAGGCAA
1 ATATATCCGGGCTAAGACCCGAAGGCAA
78897801 ATGTGTTTGC
Statistics
Matches: 179, Mismatches: 5, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
38 36 0.20
40 143 0.80
ACGTcount: A:0.31, C:0.20, G:0.27, T:0.21
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
Found at i:78900698 original size:27 final size:27
Alignment explanation
Indices: 78900668--78900844 Score: 169
Period size: 27 Copynumber: 6.6 Consensus size: 27
78900658 ATATTGAGTC
* *
78900668 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
78900695 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
78900722 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
78900750 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
78900777 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * *
78900804 CGCACACTTAGTGCAACATAGT-AAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
78900830 CGCACACATAGTGCT
1 CGCACACTTAGTGCT
78900845 GTACAATTTA
Statistics
Matches: 127, Mismatches: 20, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
26 15 0.12
27 88 0.69
28 24 0.19
ACGTcount: A:0.31, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:78900760 original size:55 final size:54
Alignment explanation
Indices: 78900668--78900844 Score: 196
Period size: 55 Copynumber: 3.3 Consensus size: 54
78900658 ATATTGAGTC
* * * * *
78900668 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCAACATAGTCAAAT
* ** * *
78900722 CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATC-AACTCGCACACTTAGTGCAACATAGTCAAAT
* **
78900777 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGT-AAAT
1 CGCACACTTAGTGCTA-CATAATCAACTCGCACACTTAGTGCAACATAGTCAAAT
*
78900830 CGCACACATAGTGCT
1 CGCACACTTAGTGCT
78900845 GTACAATTTA
Statistics
Matches: 103, Mismatches: 17, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
53 16 0.16
54 42 0.41
55 45 0.44
ACGTcount: A:0.31, C:0.28, G:0.15, T:0.27
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCAACATAGTCAAAT
Found at i:78900807 original size:82 final size:80
Alignment explanation
Indices: 78900689--78900843 Score: 213
Period size: 82 Copynumber: 1.9 Consensus size: 80
78900679 TGCTATATAA
* *
78900689 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGT-AAA-TCGCA
*
78900754 CACTTAGTGCCGCATGG
64 CACATAGTGCCGCATGG
* * **
78900771 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTAAATCGCAC
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTAAATCGCAC
78900835 ACATAGTGC
65 ACATAGTGC
78900844 TGTACAATTT
Statistics
Matches: 65, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
80 14 0.22
81 4 0.06
82 47 0.72
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.26
Consensus pattern (80 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTAAATCGCACA
CATAGTGCCGCATGG
Found at i:78906466 original size:28 final size:29
Alignment explanation
Indices: 78906434--78906516 Score: 109
Period size: 28 Copynumber: 3.0 Consensus size: 29
78906424 ACATACCTAT
* *
78906434 ATATGGCCCATTAGGCCC-AATCTCTTTC
1 ATATGGCCCATTAGGCCCAAATCACATTC
78906462 ATATGGCCCATTAGGCCCAAATCACATTC
1 ATATGGCCCATTAGGCCCAAATCACATTC
* *
78906491 ATATGG-CCACTAGGCCCGAATC-CATT
1 ATATGGCCCATTAGGCCCAAATCACATT
78906517 TTACAGTCAT
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 4 0.08
28 32 0.64
29 14 0.28
ACGTcount: A:0.27, C:0.31, G:0.16, T:0.27
Consensus pattern (29 bp):
ATATGGCCCATTAGGCCCAAATCACATTC
Found at i:78906624 original size:19 final size:18
Alignment explanation
Indices: 78906591--78906627 Score: 56
Period size: 19 Copynumber: 2.0 Consensus size: 18
78906581 TGGGCCCAAC
78906591 AGCCCATCAGGCCCATTT
1 AGCCCATCAGGCCCATTT
*
78906609 AGCCCATTCCGGCCCATTT
1 AGCCCA-TCAGGCCCATTT
78906628 GGCCAATTCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.19, C:0.41, G:0.16, T:0.24
Consensus pattern (18 bp):
AGCCCATCAGGCCCATTT
Found at i:78906636 original size:19 final size:19
Alignment explanation
Indices: 78906600--78906636 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
78906590 CAGCCCATCA
*
78906600 GGCCCATTTAGCCCATTCC
1 GGCCCATTTAGCCAATTCC
*
78906619 GGCCCATTTGGCCAATTC
1 GGCCCATTTAGCCAATTC
78906637 ACAACCCAAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.16, C:0.38, G:0.19, T:0.27
Consensus pattern (19 bp):
GGCCCATTTAGCCAATTCC
Found at i:78909359 original size:42 final size:42
Alignment explanation
Indices: 78909299--78909452 Score: 159
Period size: 42 Copynumber: 3.6 Consensus size: 42
78909289 CGAGACTATG
* *
78909299 TGTAAGACCATATTTGGGATATGGCATCATTATGAGATATCG
1 TGTAAGACCATATCTGGGATATGGCATCATTATGAGATATCA
* * **
78909341 CGTAAGACCATATCTGGGATATGGCATCGA-TATGAGATTTTT
1 TGTAAGACCATATCTGGGATATGGCATC-ATTATGAGATATCA
* * * **
78909383 TGTAAGACCATAGCTGGGCTATTGGCAT-TTATATGAGATCCCA
1 TGTAAGACCATATCTGGGATA-TGGCATCAT-TATGAGATATCA
*
78909426 TGTAAGACCATATCTAGGATATGGCAT
1 TGTAAGACCATATCTGGGATATGGCAT
78909453 TGGTGTAGTA
Statistics
Matches: 92, Mismatches: 16, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
42 59 0.64
43 33 0.36
ACGTcount: A:0.30, C:0.15, G:0.23, T:0.32
Consensus pattern (42 bp):
TGTAAGACCATATCTGGGATATGGCATCATTATGAGATATCA
Found at i:78918607 original size:27 final size:27
Alignment explanation
Indices: 78918577--78918754 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
78918567 ATATTGAGTC
* * * *
78918577 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
78918604 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
78918631 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
78918659 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
78918686 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
78918713 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
78918740 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
78918755 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:78918716 original size:82 final size:81
Alignment explanation
Indices: 78918598--78918753 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
78918588 TGCTATATAA
* *
78918598 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
78918663 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
78918680 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
78918744 CACTTAGTGC
65 CACTTAGTGC
78918754 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:78921217 original size:48 final size:48
Alignment explanation
Indices: 78921117--78921210 Score: 143
Period size: 48 Copynumber: 2.0 Consensus size: 48
78921107 TAGCTGGGCT
* * *
78921117 ATTGGCATCGATCTACGATCCCATGTAAGACCATGTCTGGGATATGAC
1 ATTGGCATCGATATACGATCCCATGTAAGACCATATCCGGGATATGAC
**
78921165 ATTGGCATCGATATGTGATCCCATGTAAGACCATATCCGGGATATG
1 ATTGGCATCGATATACGATCCCATGTAAGACCATATCCGGGATATG
78921211 GAATTGGAAT
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
48 41 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (48 bp):
ATTGGCATCGATATACGATCCCATGTAAGACCATATCCGGGATATGAC
Found at i:78925036 original size:25 final size:25
Alignment explanation
Indices: 78925002--78925108 Score: 97
Period size: 25 Copynumber: 4.3 Consensus size: 25
78924992 ATAAACTCGA
*
78925002 GAATTTTTTGGAAAACCTTTGTGGT
1 GAATTCTTTGGAAAACCTTTGTGGT
* * * *
78925027 GAATTCTTTGGGAAGCTTTTGTGGC
1 GAATTCTTTGGAAAACCTTTGTGGT
* * * *
78925052 GAAATATTTGGAAAACCTCTATGGT
1 GAATTCTTTGGAAAACCTTTGTGGT
* * *
78925077 CAATTCTTTAGAAAACCTTTCTGGT
1 GAATTCTTTGGAAAACCTTTGTGGT
*
78925102 TAATTCT
1 GAATTCT
78925109 CTAAAAAGCC
Statistics
Matches: 62, Mismatches: 20, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
25 62 1.00
ACGTcount: A:0.26, C:0.13, G:0.21, T:0.40
Consensus pattern (25 bp):
GAATTCTTTGGAAAACCTTTGTGGT
Found at i:78925120 original size:25 final size:25
Alignment explanation
Indices: 78925062--78925126 Score: 78
Period size: 25 Copynumber: 2.6 Consensus size: 25
78925052 GAAATATTTG
* *
78925062 GAAAACCTCTATGGTCAATTCTTTA
1 GAAAACCTTTATGGTCAATTCTCTA
* *
78925087 GAAAACCTTTCTGGTTAATTCTCTA
1 GAAAACCTTTATGGTCAATTCTCTA
78925112 -AAAAGCCTTTATGGT
1 GAAAA-CCTTTATGGT
78925127 GTATCATTTG
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
24 4 0.12
25 30 0.88
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (25 bp):
GAAAACCTTTATGGTCAATTCTCTA
Found at i:78929063 original size:42 final size:42
Alignment explanation
Indices: 78928965--78929052 Score: 151
Period size: 42 Copynumber: 2.1 Consensus size: 42
78928955 GCATAGCCTA
*
78928965 GCACACGGGCATG-GGGGTTATTTCGAAGGGTACATGACCTG
1 GCACACGGGCATGTGGGGTTATTTCGAAGGGTACACGACCTG
*
78929006 GCACACGGGCATGTGGGGTTATTTCGAAGGGTACACGGCCTG
1 GCACACGGGCATGTGGGGTTATTTCGAAGGGTACACGACCTG
78929048 GCACA
1 GCACA
78929053 TGGTCGTGTG
Statistics
Matches: 44, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
41 13 0.30
42 31 0.70
ACGTcount: A:0.22, C:0.22, G:0.36, T:0.20
Consensus pattern (42 bp):
GCACACGGGCATGTGGGGTTATTTCGAAGGGTACACGACCTG
Found at i:78930139 original size:68 final size:68
Alignment explanation
Indices: 78930018--78930152 Score: 159
Period size: 68 Copynumber: 2.0 Consensus size: 68
78930008 GAGGTTTAGA
* * *
78930018 GTGTAAGACCATAGCTCGACTATGGCAACAAGTAGAGTTCACTAGGAGATTAAACATTGGGTTAC
1 GTGTAAGACCATAGCTCGACTATGGAAACAAGTAGAGTTCACTAGGAGATTAAACATGGGGCTAC
78930083 AAG
66 AAG
* * * *
78930086 GTGTAAGACCATAGTTCGGCTATGGAAACCAA-TAGAG-TCTGCTGGGACG-TTAAACATGGGGC
1 GTGTAAGACCATAGCTCGACTATGGAAA-CAAGTAGAGTTC-ACTAGGA-GATTAAACATGGGGC
78930148 TACAA
63 TACAA
78930153 TACGTAAGAC
Statistics
Matches: 57, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
67 2 0.04
68 51 0.89
69 4 0.07
ACGTcount: A:0.33, C:0.17, G:0.27, T:0.23
Consensus pattern (68 bp):
GTGTAAGACCATAGCTCGACTATGGAAACAAGTAGAGTTCACTAGGAGATTAAACATGGGGCTAC
AAG
Found at i:78941358 original size:44 final size:42
Alignment explanation
Indices: 78941303--78941445 Score: 144
Period size: 44 Copynumber: 3.3 Consensus size: 42
78941293 TTTTGATATG
* * *
78941303 TGATATCGTGTAAGACCATGTCAGGGACGTTGGCATC-AATT
1 TGATTTCGTGTAAGACCATGTCTGGGACATTGGCATCGAATT
* *
78941344 TGGTATTTACGTGTAAGACCACGTCTGGGACATTGGCATCGTATT
1 T-G-ATTT-CGTGTAAGACCATGTCTGGGACATTGGCATCGAATT
* * * *
78941389 TGATTTCGTGTAAGACCCTGTCTGGGATAGTGGCGTCGATATT
1 TGATTTCGTGTAAGACCATGTCTGGGACATTGGCATCGA-ATT
* *
78941432 TGATTACATGTAAG
1 TGATTTCGTGTAAG
78941446 TCCACGTGTA
Statistics
Matches: 84, Mismatches: 13, Indels: 8
0.80 0.12 0.08
Matches are distributed among these distances:
41 1 0.01
42 28 0.33
43 22 0.26
44 29 0.35
45 4 0.05
ACGTcount: A:0.24, C:0.16, G:0.27, T:0.33
Consensus pattern (42 bp):
TGATTTCGTGTAAGACCATGTCTGGGACATTGGCATCGAATT
Found at i:78941412 original size:42 final size:42
Alignment explanation
Indices: 78941303--78941445 Score: 137
Period size: 42 Copynumber: 3.3 Consensus size: 42
78941293 TTTTGATATG
* * * * *
78941303 TGATATCGTGTAAGACCATGTCAGGGACGTTGGCATC-AATT
1 TGATTTCGTGTAAGACCCTGTCTGGGACATTGGCATCGTATT
78941344 TGGTATTTACGTGTAAGACCAC-GTCTGGGACATTGGCATCGTATT
1 T-G-ATTT-CGTGTAAGACC-CTGTCTGGGACATTGGCATCGTATT
* * *
78941389 TGATTTCGTGTAAGACCCTGTCTGGGATAGTGGCGTCGATATT
1 TGATTTCGTGTAAGACCCTGTCTGGGACATTGGCATCG-TATT
* *
78941432 TGATTACATGTAAG
1 TGATTTCGTGTAAG
78941446 TCCACGTGTA
Statistics
Matches: 85, Mismatches: 10, Indels: 12
0.79 0.09 0.11
Matches are distributed among these distances:
41 2 0.02
42 28 0.33
43 23 0.27
44 28 0.33
45 4 0.05
ACGTcount: A:0.24, C:0.16, G:0.27, T:0.33
Consensus pattern (42 bp):
TGATTTCGTGTAAGACCCTGTCTGGGACATTGGCATCGTATT
Found at i:78942321 original size:46 final size:46
Alignment explanation
Indices: 78942269--78942444 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
78942259 TGGTTGAGCA
78942269 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * * *
78942315 TTCGAACTCGTTGAGTTGAGTCTGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
78942360 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
78942408 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
78942445 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 13, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.58
47 26 0.24
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:78942425 original size:93 final size:93
Alignment explanation
Indices: 78942266--78942436 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
78942256 GGATGGTTGA
* **
78942266 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTTCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
*
78942331 TGAGTCTGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
78942359 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
78942424 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
78942437 ACTTATGGGC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:78945073 original size:46 final size:45
Alignment explanation
Indices: 78944969--78945180 Score: 194
Period size: 46 Copynumber: 4.6 Consensus size: 45
78944959 AGATTTGTGT
* * ***
78944969 GCCAGTGTAAGACCATGTATGGGACATGGCATCGG-CATTGAGACAAA
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCA-CGAGATGGA
* ** * *
78945016 GGCTAGTGTAAGACATGTCTGGGACATGCATCAACCACAATATGAGA
1 -GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACGAGATG-GA
* *
78945063 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTTA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACGAGATG-GA
* * * * *
78945109 GCCAATGTCAGACATGTCTGGGACATGCGTCGGCTACGAGAT-GT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACGAGATGGA
*
78945153 GCTAGTGTAAGACATGTCTGGGACATGC
1 GCCAGTGTAAGACATGTCTGGGACATGC
78945181 GTCAGCACGG
Statistics
Matches: 134, Mismatches: 28, Indels: 8
0.79 0.16 0.05
Matches are distributed among these distances:
44 25 0.19
46 82 0.61
47 16 0.12
48 11 0.08
ACGTcount: A:0.28, C:0.20, G:0.30, T:0.22
Consensus pattern (45 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACGAGATGGA
Found at i:78945217 original size:46 final size:44
Alignment explanation
Indices: 78945017--78945223 Score: 168
Period size: 46 Copynumber: 4.6 Consensus size: 44
78945007 TGAGACAAAG
* * * * * *
78945017 GCTAGTGTAAGACATGTCTGGGACATGCATCAACCACAATATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCGTCAGCTACGACAT--GT
* * * *
78945063 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGATGTT
1 GCTAGTGTAAGACATGTCTGGGACATGCGTCAG-CTACGACATG-T
* * * * *
78945108 AGCCAATGTCAGACATGTCTGGGACATGCGTCGGCTACGAGATGT
1 -GCTAGTGTAAGACATGTCTGGGACATGCGTCAGCTACGACATGT
78945153 GCTAGTGTAAGACATGTCTGGGACATGCGTCAGC-ACGGTTACATGT
1 GCTAGTGTAAGACATGTCTGGGACATGCGTCAGCTAC-G--ACATGT
*
78945199 G-TCAGTGTAAGACCTGTCTGGGACA
1 GCT-AGTGTAAGACATGTCTGGGACA
78945224 CGGCATCGAT
Statistics
Matches: 137, Mismatches: 16, Indels: 16
0.81 0.09 0.09
Matches are distributed among these distances:
43 2 0.01
44 32 0.23
45 4 0.03
46 98 0.72
47 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.29, T:0.24
Consensus pattern (44 bp):
GCTAGTGTAAGACATGTCTGGGACATGCGTCAGCTACGACATGT
Found at i:78953159 original size:51 final size:51
Alignment explanation
Indices: 78953083--78953179 Score: 176
Period size: 51 Copynumber: 1.9 Consensus size: 51
78953073 CATTCTTATA
78953083 TATGCATGAATTTAGAGAATAGTAAGACTTTGCCTATAGAGTCTACCGAAT
1 TATGCATGAATTTAGAGAATAGTAAGACTTTGCCTATAGAGTCTACCGAAT
* *
78953134 TATGCATGAATTTAGAGAATAGTAAGACTTTTCCTGTAGAGTCTAC
1 TATGCATGAATTTAGAGAATAGTAAGACTTTGCCTATAGAGTCTAC
78953180 TAAATTCGTA
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
51 44 1.00
ACGTcount: A:0.34, C:0.13, G:0.20, T:0.33
Consensus pattern (51 bp):
TATGCATGAATTTAGAGAATAGTAAGACTTTGCCTATAGAGTCTACCGAAT
Found at i:78956961 original size:28 final size:28
Alignment explanation
Indices: 78956907--78957037 Score: 156
Period size: 28 Copynumber: 4.7 Consensus size: 28
78956897 ATTGAATGAC
* * **
78956907 TATGAATGTGATTGGGCCGGACAGGCCA
1 TATGAAAGTGATTGGGCCTGATGGGCCA
* * *
78956935 TTTGAAAGTAATTAGGCCTGATGGGCCA
1 TATGAAAGTGATTGGGCCTGATGGGCCA
78956963 TATGAAAGTGATTGGGCCTGATGGGCCA
1 TATGAAAGTGATTGGGCCTGATGGGCCA
*
78956991 TATGAATGTGATTGGGCAC-GATGGGCCA
1 TATGAAAGTGATTGGGC-CTGATGGGCCA
* *
78957019 TATGAATGAGATTGGGCCT
1 TATGAAAGTGATTGGGCCT
78957038 AAAGGGGCCA
Statistics
Matches: 89, Mismatches: 12, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
27 1 0.01
28 87 0.98
29 1 0.01
ACGTcount: A:0.26, C:0.15, G:0.34, T:0.26
Consensus pattern (28 bp):
TATGAAAGTGATTGGGCCTGATGGGCCA
Found at i:78978566 original size:43 final size:43
Alignment explanation
Indices: 78978505--78978591 Score: 165
Period size: 43 Copynumber: 2.0 Consensus size: 43
78978495 AGATAAGCAA
78978505 TTGTATGTGAAGTTTAGCAAATGTGAATTCTGGTTACAAGAAG
1 TTGTATGTGAAGTTTAGCAAATGTGAATTCTGGTTACAAGAAG
*
78978548 TTGTATGTGAAGTTTAGCAAATGTGAATTCTGGTTATAAGAAG
1 TTGTATGTGAAGTTTAGCAAATGTGAATTCTGGTTACAAGAAG
78978591 T
1 T
78978592 CTATTTTCTG
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.32, C:0.06, G:0.25, T:0.37
Consensus pattern (43 bp):
TTGTATGTGAAGTTTAGCAAATGTGAATTCTGGTTACAAGAAG
Found at i:78982115 original size:42 final size:42
Alignment explanation
Indices: 78982012--78982176 Score: 172
Period size: 43 Copynumber: 3.9 Consensus size: 42
78982002 ATATGTGCTA
*
78982012 TCGTGTAAGACCACGTCTTGGACATTGGCATCG-ATTTGGTATT
1 TCGTGTAAGACCACGTCTGGGACATTGGCATCGTATTT-G-ATT
* *
78982055 TACGTGTAAGACCATGTCTGGGACATTGCCATCGTATTTGATT
1 T-CGTGTAAGACCACGTCTGGGACATTGGCATCGTATTTGATT
* * * *
78982098 TCGTGTAAGACC-CTGTCTGGGATAGTGGAATCAATATTTGATT
1 TCGTGTAAGACCAC-GTCTGGGACATTGGCATC-GTATTTGATT
* * * *
78982141 ACATGTAAGACCACGTCTGGGACGTTGGCATTGTAT
1 TCGTGTAAGACCACGTCTGGGACATTGGCATCGTAT
78982177 GAGCTTTCCG
Statistics
Matches: 100, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
42 28 0.28
43 37 0.37
44 31 0.31
45 4 0.04
ACGTcount: A:0.24, C:0.18, G:0.25, T:0.33
Consensus pattern (42 bp):
TCGTGTAAGACCACGTCTGGGACATTGGCATCGTATTTGATT
Found at i:78982150 original size:43 final size:42
Alignment explanation
Indices: 78982054--78982163 Score: 123
Period size: 42 Copynumber: 2.6 Consensus size: 42
78982044 GATTTGGTAT
* * * *
78982054 TTACGTGTAAGACCATGTCTGGGACATTGCCATCGTATTTGA
1 TTACGTGTAAGACCCTGTCTGGGACAGTGCAATCATATTTGA
* * *
78982096 TTTCGTGTAAGACCCTGTCTGGGATAGTGGAATCAATATTTGA
1 TTACGTGTAAGACCCTGTCTGGGACAGTGCAATC-ATATTTGA
*
78982139 TTACATGTAAGACCAC-GTCTGGGAC
1 TTACGTGTAAGACC-CTGTCTGGGAC
78982164 GTTGGCATTG
Statistics
Matches: 56, Mismatches: 10, Indels: 3
0.81 0.14 0.04
Matches are distributed among these distances:
42 28 0.50
43 27 0.48
44 1 0.02
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32
Consensus pattern (42 bp):
TTACGTGTAAGACCCTGTCTGGGACAGTGCAATCATATTTGA
Found at i:78983872 original size:42 final size:42
Alignment explanation
Indices: 78983711--78983865 Score: 204
Period size: 42 Copynumber: 3.7 Consensus size: 42
78983701 TACCGTACCA
* * *
78983711 ATGCCATATCTCAGATATGGTCTTACATGTAATCTCATATAG
1 ATGCCATATCCCAGATATGGTCTTACACGAAATCTCATATAG
* *
78983753 ATGCCAATAGCCCAGCTATGGTCTTACACGAAATCTCATATCA-
1 ATGCC-ATATCCCAGATATGGTCTTACACGAAATCTCATAT-AG
* * *
78983796 AAGCCATATCCCATATATGGTCTTACACGAAGTCTCATATAG
1 ATGCCATATCCCAGATATGGTCTTACACGAAATCTCATATAG
*
78983838 ATGCCATATCCCAGATATTGTCTTACAC
1 ATGCCATATCCCAGATATGGTCTTACAC
78983866 ATAGTCTTAG
Statistics
Matches: 97, Mismatches: 13, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
41 1 0.01
42 61 0.63
43 34 0.35
44 1 0.01
ACGTcount: A:0.32, C:0.25, G:0.14, T:0.30
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACGAAATCTCATATAG
Found at i:78984688 original size:12 final size:13
Alignment explanation
Indices: 78984671--78984699 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
78984661 AGATGGACAA
78984671 AATTTGGC-TTTT
1 AATTTGGCTTTTT
78984683 AATTTGGCTTTTT
1 AATTTGGCTTTTT
78984696 AATT
1 AATT
78984700 CATTTAATTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 8 0.50
13 8 0.50
ACGTcount: A:0.21, C:0.07, G:0.14, T:0.59
Consensus pattern (13 bp):
AATTTGGCTTTTT
Found at i:78985538 original size:26 final size:26
Alignment explanation
Indices: 78985509--78985561 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
78985499 ATGACACATC
78985509 TAACAAAATGACCAAGCCCCTATACA
1 TAACAAAATGACCAAGCCCCTATACA
78985535 TAACAAAATGACCAAGCCCCTATACA
1 TAACAAAATGACCAAGCCCCTATACA
78985561 T
1 T
78985562 TCCATATTCT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.45, C:0.30, G:0.08, T:0.17
Consensus pattern (26 bp):
TAACAAAATGACCAAGCCCCTATACA
Found at i:78987299 original size:51 final size:51
Alignment explanation
Indices: 78987222--78987369 Score: 237
Period size: 51 Copynumber: 2.9 Consensus size: 51
78987212 CGGATACACG
*
78987222 GTGGCCTTCACATAGTACCAGC-CTTGTAG-CCAAAGGTATTTTATTCACAAA
1 GTGGCCTTCACATAGTACCA-CACTTGT-GTCCAAAGCTATTTTATTCACAAA
*
78987273 GTGGCCTTCACATAGTACTACACTTGTGTCCAAAGCTATTTTATTCACAAA
1 GTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTCACAAA
*
78987324 GTGGTCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTC
1 GTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTC
78987370 CTAAGGTTCA
Statistics
Matches: 91, Mismatches: 4, Indels: 4
0.92 0.04 0.04
Matches are distributed among these distances:
50 2 0.02
51 89 0.98
ACGTcount: A:0.28, C:0.24, G:0.16, T:0.33
Consensus pattern (51 bp):
GTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTCACAAA
Found at i:78987450 original size:52 final size:52
Alignment explanation
Indices: 78987393--78987511 Score: 202
Period size: 52 Copynumber: 2.3 Consensus size: 52
78987383 GGGAAATTTC
* *
78987393 TCACTTAGCACAATGCCATGGACTTATTTCACTTAGATGCCATGGACTTCTT
1 TCACTTAGCACAATGCCATGGACTTATTTCACTCAGATGCCATGGACTTATT
* *
78987445 TCACTTAGCACATTGCCATGGACTTATTTCACTCAGATGCCATGGTCTTATT
1 TCACTTAGCACAATGCCATGGACTTATTTCACTCAGATGCCATGGACTTATT
78987497 TCACTTAGCACAATG
1 TCACTTAGCACAATG
78987512 TCGTATGCTA
Statistics
Matches: 62, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
52 62 1.00
ACGTcount: A:0.25, C:0.25, G:0.15, T:0.34
Consensus pattern (52 bp):
TCACTTAGCACAATGCCATGGACTTATTTCACTCAGATGCCATGGACTTATT
Found at i:78987474 original size:28 final size:27
Alignment explanation
Indices: 78987393--78987508 Score: 145
Period size: 24 Copynumber: 4.4 Consensus size: 27
78987383 GGGAAATTTC
78987393 TCACTTAGCACAATGCCATGGACTTATT
1 TCACTTAGCAC-ATGCCATGGACTTATT
*
78987421 TCACTTAG---ATGCCATGGACTTCTT
1 TCACTTAGCACATGCCATGGACTTATT
78987445 TCACTTAGCACATTGCCATGGACTTATT
1 TCACTTAGCACA-TGCCATGGACTTATT
* *
78987473 TCAC-T--CAGATGCCATGGTCTTATT
1 TCACTTAGCACATGCCATGGACTTATT
78987497 TCACTTAGCACA
1 TCACTTAGCACA
78987509 ATGTCGTATG
Statistics
Matches: 76, Mismatches: 5, Indels: 15
0.79 0.05 0.16
Matches are distributed among these distances:
24 41 0.54
25 4 0.05
27 5 0.07
28 26 0.34
ACGTcount: A:0.25, C:0.26, G:0.15, T:0.34
Consensus pattern (27 bp):
TCACTTAGCACATGCCATGGACTTATT
Found at i:78991823 original size:40 final size:40
Alignment explanation
Indices: 78991727--78991982 Score: 353
Period size: 40 Copynumber: 6.5 Consensus size: 40
78991717 TGGATGATAA
* * *
78991727 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
* *
78991767 CCGGGC-AAGTCCCGAAGGTATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
78991806 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
78991846 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAAG-TACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCG-AGTTACTATAT
* *
78991886 CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
78991926 CCGGGCTAAGTCCCGAAGGCATTTGAGC-AG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
**
78991965 CC-GGCTAAACCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
78991983 TACTTGGTTG
Statistics
Matches: 197, Mismatches: 14, Indels: 12
0.88 0.06 0.05
Matches are distributed among these distances:
38 17 0.09
39 43 0.22
40 135 0.69
41 2 0.01
ACGTcount: A:0.24, C:0.23, G:0.29, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:78993517 original size:43 final size:43
Alignment explanation
Indices: 78993455--78993537 Score: 121
Period size: 43 Copynumber: 1.9 Consensus size: 43
78993445 TAGATATGTG
* * *
78993455 GCATTCGAGCTCGTAGAGAGGTCCGAGTTTATTATGGATGCGA
1 GCATCCGAGCTCGTAGAGAGGTCCAAGTTCATTATGGATGCGA
* *
78993498 GCATCCGAGCTCGTTGAGAGGTCTAAGTTCATTATGGATG
1 GCATCCGAGCTCGTAGAGAGGTCCAAGTTCATTATGGATG
78993538 TGTTACATGT
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 35 1.00
ACGTcount: A:0.23, C:0.17, G:0.31, T:0.29
Consensus pattern (43 bp):
GCATCCGAGCTCGTAGAGAGGTCCAAGTTCATTATGGATGCGA
Found at i:78994629 original size:30 final size:30
Alignment explanation
Indices: 78994588--78994656 Score: 129
Period size: 30 Copynumber: 2.3 Consensus size: 30
78994578 CACACGGGTA
78994588 GACACACGGGCATGTGTCTAGACCGTGTGT
1 GACACACGGGCATGTGTCTAGACCGTGTGT
*
78994618 GACATACGGGCATGTGTCTAGACCGTGTGT
1 GACACACGGGCATGTGTCTAGACCGTGTGT
78994648 GACACACGG
1 GACACACGG
78994657 TCTACCCCAT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
30 37 1.00
ACGTcount: A:0.22, C:0.23, G:0.33, T:0.22
Consensus pattern (30 bp):
GACACACGGGCATGTGTCTAGACCGTGTGT
Found at i:78994899 original size:28 final size:28
Alignment explanation
Indices: 78994859--78994912 Score: 90
Period size: 28 Copynumber: 1.9 Consensus size: 28
78994849 CACGGGCAAT
*
78994859 GACACTGGCGTGTCTAGGCTATGTGAGG
1 GACACAGGCGTGTCTAGGCTATGTGAGG
*
78994887 GACACAGGCGTGTCTAGGCTGTGTGA
1 GACACAGGCGTGTCTAGGCTATGTGA
78994913 AAACCCCTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.19, C:0.19, G:0.39, T:0.24
Consensus pattern (28 bp):
GACACAGGCGTGTCTAGGCTATGTGAGG
Found at i:78998147 original size:15 final size:15
Alignment explanation
Indices: 78998127--78998156 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
78998117 CCAGTGTTAT
78998127 TACAATAAGAATCAA
1 TACAATAAGAATCAA
*
78998142 TACAATCAGAATCAA
1 TACAATAAGAATCAA
78998157 GGAAAGAATT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.57, C:0.17, G:0.07, T:0.20
Consensus pattern (15 bp):
TACAATAAGAATCAA
Found at i:79006840 original size:27 final size:27
Alignment explanation
Indices: 79006810--79006980 Score: 135
Period size: 27 Copynumber: 6.3 Consensus size: 27
79006800 CCTAAAATAT
* *
79006810 GTAAAATAACCGTCATACCCCTGTAAA
1 GTAAAATGACCGTAATACCCCTGTAAA
* * **
79006837 GTAAAATGACCGTTATACCCTTGTAGG
1 GTAAAATGACCGTAATACCCCTGTAAA
** **
79006864 GTAAAATGACCGTAATGTCCCTGTAGG
1 GTAAAATGACCGTAATACCCCTGTAAA
*
79006891 GTAAAATGACCGTAATACCCCTATAAA
1 GTAAAATGACCGTAATACCCCTGTAAA
* ** * ** **
79006918 GTAAAATGGCTATAATGCCTTTGTAGG
1 GTAAAATGACCGTAATACCCCTGTAAA
* * **
79006945 GTAAAAAGATCGTAATACCCCTGTATG
1 GTAAAATGACCGTAATACCCCTGTAAA
79006972 GTAAAATGA
1 GTAAAATGA
79006981 TGATTATGCC
Statistics
Matches: 111, Mismatches: 33, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
27 111 1.00
ACGTcount: A:0.36, C:0.18, G:0.19, T:0.26
Consensus pattern (27 bp):
GTAAAATGACCGTAATACCCCTGTAAA
Found at i:79006922 original size:54 final size:53
Alignment explanation
Indices: 79006810--79006980 Score: 162
Period size: 54 Copynumber: 3.2 Consensus size: 53
79006800 CCTAAAATAT
* * * ** * * *
79006810 GTAAAATAACCGTCATACCCCTGTAAAGTAAAATGACCGTTATACCCTTGTAGG
1 GTAAAATGACCGTAAT-GCCCTGTAGGGTAAAATGACCGTAATACCCCTGTAAG
* *
79006864 GTAAAATGACCGTAATGTCCCTGTAGGGTAAAATGACCGTAATACCCCTATAAA
1 GTAAAATGACCGTAATG-CCCTGTAGGGTAAAATGACCGTAATACCCCTGTAAG
* ** * * * *
79006918 GTAAAATGGCTATAATGCCTTTGTAGGGTAAAAAGATCGTAATACCCCTGTATG
1 GTAAAATGACCGTAATGCC-CTGTAGGGTAAAATGACCGTAATACCCCTGTAAG
79006972 GTAAAATGA
1 GTAAAATGA
79006981 TGATTATGCC
Statistics
Matches: 95, Mismatches: 20, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
53 2 0.02
54 93 0.98
ACGTcount: A:0.36, C:0.18, G:0.19, T:0.26
Consensus pattern (53 bp):
GTAAAATGACCGTAATGCCCTGTAGGGTAAAATGACCGTAATACCCCTGTAAG
Found at i:79006945 original size:81 final size:81
Alignment explanation
Indices: 79006810--79006980 Score: 216
Period size: 81 Copynumber: 2.1 Consensus size: 81
79006800 CCTAAAATAT
* * * * * *
79006810 GTAAAATAACCGTCATACCCCTGTAAAGTAAAATGACCGTTATACCCTTGTAGGGTAAAATGACC
1 GTAAAATGACCGTAATACCCCTATAAAGTAAAATGACCATAATACCCTTGTAGGGTAAAAAGACC
**
79006875 GTAATGTCCCTGTAGG
66 GTAATACCCCTGTAGG
* * * * *
79006891 GTAAAATGACCGTAATACCCCTATAAAGTAAAATGGCTATAATGCCTTTGTAGGGTAAAAAGATC
1 GTAAAATGACCGTAATACCCCTATAAAGTAAAATGACCATAATACCCTTGTAGGGTAAAAAGACC
*
79006956 GTAATACCCCTGTATG
66 GTAATACCCCTGTAGG
79006972 GTAAAATGA
1 GTAAAATGA
79006981 TGATTATGCC
Statistics
Matches: 76, Mismatches: 14, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
81 76 1.00
ACGTcount: A:0.36, C:0.18, G:0.19, T:0.26
Consensus pattern (81 bp):
GTAAAATGACCGTAATACCCCTATAAAGTAAAATGACCATAATACCCTTGTAGGGTAAAAAGACC
GTAATACCCCTGTAGG
Found at i:79009069 original size:27 final size:27
Alignment explanation
Indices: 79009039--79009216 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
79009029 ATATTGAGCC
* * * *
79009039 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
79009066 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
79009093 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
79009121 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
79009148 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
79009175 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
79009202 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
79009217 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:79009178 original size:82 final size:81
Alignment explanation
Indices: 79009060--79009215 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
79009050 TGCTATATAA
* *
79009060 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
79009125 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
79009142 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
79009206 CACTTAGTGC
65 CACTTAGTGC
79009216 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:79014209 original size:27 final size:27
Alignment explanation
Indices: 79014179--79014377 Score: 240
Period size: 27 Copynumber: 7.4 Consensus size: 27
79014169 CCCCAAAATA
* *
79014179 GGTAAAATAATCGTAATACCCCTGTAA
1 GGTAAAATGATCGTAATACCCCTGTAG
* * *
79014206 GGTAAAATGACCATTATACCCCTGTAG
1 GGTAAAATGATCGTAATACCCCTGTAG
** *
79014233 GGTAAAATGATCGTAATGTCCTTGTAG
1 GGTAAAATGATCGTAATACCCCTGTAG
79014260 GGTAAAATGATCGTAATACCCCTGTA-
1 GGTAAAATGATCGTAATACCCCTGTAG
* *
79014286 GGTAAAATGACCGTAATACCCCTATAG
1 GGTAAAATGATCGTAATACCCCTGTAG
* * *
79014313 GGTAAAATGA-CTATAATGCCCTTGTAG
1 GGTAAAATGATC-GTAATACCCCTGTAG
* *
79014340 GGTAAAATGATCGTAATACCCCTTTAT
1 GGTAAAATGATCGTAATACCCCTGTAG
79014367 GGTAAAATGAT
1 GGTAAAATGAT
79014378 GATTATGCCC
Statistics
Matches: 144, Mismatches: 25, Indels: 6
0.82 0.14 0.03
Matches are distributed among these distances:
26 25 0.17
27 118 0.82
28 1 0.01
ACGTcount: A:0.35, C:0.17, G:0.20, T:0.28
Consensus pattern (27 bp):
GGTAAAATGATCGTAATACCCCTGTAG
Found at i:79014404 original size:80 final size:80
Alignment explanation
Indices: 79014179--79014376 Score: 299
Period size: 80 Copynumber: 2.5 Consensus size: 80
79014169 CCCCAAAATA
* * * *
79014179 GGTAAAATAATCGTAATACCCCTGTAAGGTAAAATGACCATTATACCCCTGTAGGGTAAAATGA-
1 GGTAAAATGATCGTAATACCCCTGT-AGGTAAAATGACCGTAATACCCCTATAGGGTAAAATGAC
* *
79014243 TCGTAATGTCCTTGTAG
65 T-ATAATGCCCTTGTAG
79014260 GGTAAAATGATCGTAATACCCCTGTAGGTAAAATGACCGTAATACCCCTATAGGGTAAAATGACT
1 GGTAAAATGATCGTAATACCCCTGTAGGTAAAATGACCGTAATACCCCTATAGGGTAAAATGACT
79014325 ATAATGCCCTTGTAG
66 ATAATGCCCTTGTAG
*
79014340 GGTAAAATGATCGTAATACCCCTTTATGGTAAAATGA
1 GGTAAAATGATCGTAATACCCCTGTA-GGTAAAATGA
79014377 TGATTATGCC
Statistics
Matches: 108, Mismatches: 7, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
80 73 0.68
81 35 0.32
ACGTcount: A:0.35, C:0.17, G:0.20, T:0.28
Consensus pattern (80 bp):
GGTAAAATGATCGTAATACCCCTGTAGGTAAAATGACCGTAATACCCCTATAGGGTAAAATGACT
ATAATGCCCTTGTAG
Found at i:79018283 original size:51 final size:51
Alignment explanation
Indices: 79018207--79018353 Score: 251
Period size: 51 Copynumber: 2.9 Consensus size: 51
79018197 GGATACACGA
*
79018207 TGGCCTTCACATAGTACCACCCTTGTAG-CCAAAGCTATTTTATTCACAAAG
1 TGGCCTTCACATAGTACCACACTTGT-GTCCAAAGCTATTTTATTCACAAAG
*
79018258 TGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTATATTCACAAAG
1 TGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTCACAAAG
*
79018309 TGGCCTTCACATAGTACCGCACTTGTGTCCAAAGCTATTTTATTC
1 TGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTC
79018354 CTAAGGTTCA
Statistics
Matches: 91, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
50 1 0.01
51 90 0.99
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.31
Consensus pattern (51 bp):
TGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTCACAAAG
Found at i:79018414 original size:28 final size:27
Alignment explanation
Indices: 79018377--79018471 Score: 108
Period size: 28 Copynumber: 3.6 Consensus size: 27
79018367 AGGAAATTTC
*
79018377 TCACTTAGCATAATGCAATGGACTTATT
1 TCACTTAGCACAATGC-ATGGACTTATT
*
79018405 TCACTTAGCACATTGTCATGGACTTATT
1 TCACTTAGCACAATG-CATGGACTTATT
*
79018433 TCACTTAG----ATGCCATGGTCTTATT
1 TCACTTAGCACAATG-CATGGACTTATT
79018457 TCACTTAGCACAATG
1 TCACTTAGCACAATG
79018472 TCGTATCCTA
Statistics
Matches: 57, Mismatches: 5, Indels: 10
0.79 0.07 0.14
Matches are distributed among these distances:
24 21 0.37
28 35 0.61
29 1 0.02
ACGTcount: A:0.27, C:0.21, G:0.15, T:0.37
Consensus pattern (27 bp):
TCACTTAGCACAATGCATGGACTTATT
Found at i:79018454 original size:24 final size:25
Alignment explanation
Indices: 79018389--79018466 Score: 95
Period size: 24 Copynumber: 3.0 Consensus size: 25
79018379 ACTTAGCATA
*
79018389 ATGCAATGGACTTATTTCACTTAGCAC
1 ATGCCATGGACTTATTTCACTTAG--C
*
79018416 ATTGTCATGGACTTATTTCACTTAG-
1 A-TGCCATGGACTTATTTCACTTAGC
*
79018441 ATGCCATGGTCTTATTTCACTTAGC
1 ATGCCATGGACTTATTTCACTTAGC
79018466 A
1 A
79018467 CAATGTCGTA
Statistics
Matches: 45, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
24 21 0.47
25 2 0.04
27 1 0.02
28 21 0.47
ACGTcount: A:0.26, C:0.21, G:0.15, T:0.38
Consensus pattern (25 bp):
ATGCCATGGACTTATTTCACTTAGC
Found at i:79024981 original size:27 final size:27
Alignment explanation
Indices: 79024950--79025127 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
79024940 TAAATTGTAC
79024950 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
79024977 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
79025003 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
79025031 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
79025059 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
79025086 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
79025113 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
79025128 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:79025064 original size:82 final size:81
Alignment explanation
Indices: 79024951--79025106 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
79024941 AAATTGTACA
* *
79024951 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
79025015 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
79025032 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
79025097 TGCGAGTTGA
65 TGCGAATTGA
79025107 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:79025118 original size:82 final size:81
Alignment explanation
Indices: 79024947--79025127 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
79024937 GATTAAATTG
* *
79024947 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
79025012 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
79025028 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
79025092 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
79025110 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
79025128 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:79032254 original size:13 final size:13
Alignment explanation
Indices: 79032236--79032261 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
79032226 CCATTTATGC
79032236 GTTATTAGACTAA
1 GTTATTAGACTAA
79032249 GTTATTAGACTAA
1 GTTATTAGACTAA
79032262 TTGAATGAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.08, G:0.15, T:0.38
Consensus pattern (13 bp):
GTTATTAGACTAA
Found at i:79033654 original size:27 final size:27
Alignment explanation
Indices: 79033623--79033800 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
79033613 TAAATTGTAC
79033623 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
79033650 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
79033676 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
79033704 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
79033732 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
79033759 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
79033786 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
79033801 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:79033737 original size:82 final size:81
Alignment explanation
Indices: 79033624--79033779 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
79033614 AAATTGTACA
* *
79033624 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
79033688 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
79033705 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
79033770 TGCGAGTTGA
65 TGCGAATTGA
79033780 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:79033791 original size:82 final size:81
Alignment explanation
Indices: 79033620--79033800 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
79033610 GATTAAATTG
* *
79033620 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
79033685 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
79033701 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
79033765 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
79033783 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
79033801 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:79037647 original size:43 final size:43
Alignment explanation
Indices: 79037531--79037727 Score: 299
Period size: 43 Copynumber: 4.6 Consensus size: 43
79037521 CTGAACTCAT
* * * *
79037531 TCACCGGTATTA-CGCCTTCTAGGCTCAAAGCCTGATATTAAC
1 TCACCGGCATTATAGCCTGCTAGGCTCGAAGCCTGATATTAAC
*
79037573 TCACCGGCATTA-CGCCTGCTAGGCTCGAAGCCTGATATTAAC
1 TCACCGGCATTATAGCCTGCTAGGCTCGAAGCCTGATATTAAC
* **
79037615 TCACTGGCATTATAGCCTGCTAGGCTCGAAGCCCAATATTAAC
1 TCACCGGCATTATAGCCTGCTAGGCTCGAAGCCTGATATTAAC
*
79037658 TCACCGGCATTATAGCCTACTAGGCTCGAAGCCTGATATTAAC
1 TCACCGGCATTATAGCCTGCTAGGCTCGAAGCCTGATATTAAC
79037701 TCACCGGCATTATAGCCTGCTAGGCTC
1 TCACCGGCATTATAGCCTGCTAGGCTC
79037728 AAAGGCTCGA
Statistics
Matches: 142, Mismatches: 12, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
42 50 0.35
43 92 0.65
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.26
Consensus pattern (43 bp):
TCACCGGCATTATAGCCTGCTAGGCTCGAAGCCTGATATTAAC
Found at i:79043983 original size:20 final size:20
Alignment explanation
Indices: 79043958--79043997 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
79043948 TGCACACTCA
79043958 GTGCCAATTCCTTGTAACCT
1 GTGCCAATTCCTTGTAACCT
79043978 GTGCCAATTCCTTGTAACCT
1 GTGCCAATTCCTTGTAACCT
79043998 ATCGCACACT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.20, C:0.30, G:0.15, T:0.35
Consensus pattern (20 bp):
GTGCCAATTCCTTGTAACCT
Found at i:79044830 original size:45 final size:45
Alignment explanation
Indices: 79044779--79044870 Score: 175
Period size: 45 Copynumber: 2.0 Consensus size: 45
79044769 CTTCTATTTT
79044779 CTTCTTCTTTTGATTATAATTGGCTATGGTGATATTATAAGAGCA
1 CTTCTTCTTTTGATTATAATTGGCTATGGTGATATTATAAGAGCA
*
79044824 CTTCTTCTTTTGTTTATAATTGGCTATGGTGATATTATAAGAGCA
1 CTTCTTCTTTTGATTATAATTGGCTATGGTGATATTATAAGAGCA
79044869 CT
1 CT
79044871 GAGGCTTATT
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 46 1.00
ACGTcount: A:0.25, C:0.12, G:0.17, T:0.46
Consensus pattern (45 bp):
CTTCTTCTTTTGATTATAATTGGCTATGGTGATATTATAAGAGCA
Found at i:79045036 original size:14 final size:14
Alignment explanation
Indices: 79045017--79045060 Score: 52
Period size: 14 Copynumber: 3.0 Consensus size: 14
79045007 CATAACTTAT
79045017 ATTATATACATATA
1 ATTATATACATATA
* *
79045031 ATTATATACATTTT
1 ATTATATACATATA
79045045 ATTATTATAACATATA
1 ATTA-TAT-ACATATA
79045061 TATATTGTAC
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
14 16 0.67
15 3 0.12
16 5 0.21
ACGTcount: A:0.45, C:0.07, G:0.00, T:0.48
Consensus pattern (14 bp):
ATTATATACATATA
Found at i:79048115 original size:68 final size:64
Alignment explanation
Indices: 79047998--79048250 Score: 194
Period size: 68 Copynumber: 3.9 Consensus size: 64
79047988 ATACAGATAG
* * * *
79047998 TATGTAGCTAGGTCACATGTATGATGCTGAGTGCACATCATGTGTACAAGAGAGCTACAAGACAT
1 TATGTAGCTAGGTCGCATGGATGATACTGAGTGCACACCATGTGTACAAGAGAGCTAC--GACA-
79048063 TA
63 TA
* * **
79048065 TGATGTAGCTAGGTCGCATGGGTGATACT-ATGTGTACACCATGTAG-ACAAGAGAGCTACGGGA
1 T-ATGTAGCTAGGTCGCATGGATGATACTGA-GTGCACACCATGT-GTACAAGAGAGCTACGACA
79048128 TA
63 TA
* * *
79048130 TATGTAGCTAGGTCGCATGCGAGGCTCCAGGTGAAG-G-ACACCATGTAG-ACAAGAGAGCTACG
1 TATGTAGCTAGGTCGCATG-GATGAT--A-CTG-AGTGCACACCATGT-GTACAAGAGAGCTACG
*
79048192 AGATA
60 ACATA
* * * * **
79048197 AAT-TGGCTAGGTCACATGGATGGTACTGAGTGTTCACCATGTGTACAAGAGAGC
1 TATGTAGCTAGGTCGCATGGATGATACTGAGTGCACACCATGTGTACAAGAGAGC
79048251 CGAACTCTAT
Statistics
Matches: 154, Mismatches: 20, Indels: 28
0.76 0.10 0.14
Matches are distributed among these distances:
61 2 0.01
62 4 0.03
63 19 0.12
64 18 0.12
65 10 0.06
66 15 0.10
67 34 0.22
68 49 0.32
69 2 0.01
70 1 0.01
ACGTcount: A:0.30, C:0.17, G:0.29, T:0.24
Consensus pattern (64 bp):
TATGTAGCTAGGTCGCATGGATGATACTGAGTGCACACCATGTGTACAAGAGAGCTACGACATA
Found at i:79048148 original size:64 final size:64
Alignment explanation
Indices: 79048067--79048250 Score: 171
Period size: 67 Copynumber: 2.8 Consensus size: 64
79048057 AGACATTATG
* *
79048067 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * *
79048131 ATGTAGCTAGGTCGCATGCGAG-GCT-CCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAG
1 ATGTAGCTAGGTCGCATG-G-GTGATACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAG
79048194 ATAA
61 ATAA
* * * * *
79048198 AT-TGGCTAGGTCACATGGATGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGATACT-ATGTGTACACCATGTAG-ACAAGAGAGC
79048251 CGAACTCTAT
Statistics
Matches: 97, Mismatches: 14, Indels: 19
0.75 0.11 0.15
Matches are distributed among these distances:
62 1 0.01
63 19 0.20
64 21 0.22
65 6 0.06
66 17 0.18
67 33 0.34
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.22
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:79052681 original size:23 final size:23
Alignment explanation
Indices: 79052651--79052698 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
79052641 TTGTAAATCA
79052651 TTTATTAACATCGTGACCCAAGT
1 TTTATTAACATCGTGACCCAAGT
79052674 TTTATTAACATCGTGACCCAAGT
1 TTTATTAACATCGTGACCCAAGT
79052697 TT
1 TT
79052699 AGTAGCATTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.29, C:0.21, G:0.12, T:0.38
Consensus pattern (23 bp):
TTTATTAACATCGTGACCCAAGT
Found at i:79055630 original size:14 final size:14
Alignment explanation
Indices: 79055611--79055654 Score: 52
Period size: 14 Copynumber: 3.0 Consensus size: 14
79055601 CATAACTTAT
79055611 ATTATATACATATA
1 ATTATATACATATA
* *
79055625 ATTATATACATTTT
1 ATTATATACATATA
79055639 ATTATTATAACATATA
1 ATTA-TAT-ACATATA
79055655 TATATTGTAA
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
14 16 0.67
15 3 0.12
16 5 0.21
ACGTcount: A:0.45, C:0.07, G:0.00, T:0.48
Consensus pattern (14 bp):
ATTATATACATATA
Found at i:79067752 original size:30 final size:29
Alignment explanation
Indices: 79067716--79067776 Score: 113
Period size: 30 Copynumber: 2.1 Consensus size: 29
79067706 AAACGGAAGT
79067716 TTTGGCACTAAGTGTGCGATTTAAACTAGC
1 TTTGGCACTAAGTGTGCGATTT-AACTAGC
79067746 TTTGGCACTAAGTGTGCGATTTAACTAGC
1 TTTGGCACTAAGTGTGCGATTTAACTAGC
79067775 TT
1 TT
79067777 CGGCTACTTG
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
29 9 0.29
30 22 0.71
ACGTcount: A:0.25, C:0.16, G:0.23, T:0.36
Consensus pattern (29 bp):
TTTGGCACTAAGTGTGCGATTTAACTAGC
Found at i:79072141 original size:20 final size:20
Alignment explanation
Indices: 79072103--79072143 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
79072093 TTTGTGTTTA
**
79072103 AGTTTTGAGGTTTTTTTTTT
1 AGTTTTGAGGTTTAGTTTTT
*
79072123 AGTTTTGGGGTTTAGTTTTT
1 AGTTTTGAGGTTTAGTTTTT
79072143 A
1 A
79072144 TTTCCATCTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.12, C:0.00, G:0.24, T:0.63
Consensus pattern (20 bp):
AGTTTTGAGGTTTAGTTTTT
Found at i:79076895 original size:38 final size:37
Alignment explanation
Indices: 79076845--79077028 Score: 140
Period size: 38 Copynumber: 4.7 Consensus size: 37
79076835 ATAGTATTAT
*
79076845 ATATTATG-ATTTTATTAAATTCATATAAGAATATTTA
1 ATATTAAGAATTTTATTAAATT-ATATAAGAATATTTA
**** *
79076882 ATATTAAGAATTTTATTAAATTATATATTTTTATTAAATT
1 ATATTAAGAATTTTATTAAATTATATAAGAATATT---TA
* * * *
79076922 ATATTTAATAATAATTATTTTAAATTATATTA-TATAGTATTA
1 ATA-TTAAGAAT--TT-TATTAAATTATATAAGAATA-T-TTA
*
79076964 TATATTATG-ATTTTATTAAATTCATATAAGAATATTTA
1 -ATATTAAGAATTTTATTAAATT-ATATAAGAATATTTA
79077002 ATATTAAGAATTTTATTAAATTATATA
1 ATATTAAGAATTTTATTAAATTATATA
79077029 TATTTTTTAA
Statistics
Matches: 115, Mismatches: 18, Indels: 28
0.71 0.11 0.17
Matches are distributed among these distances:
37 28 0.24
38 37 0.32
39 8 0.07
40 7 0.06
41 9 0.08
42 4 0.03
43 8 0.07
44 13 0.11
45 1 0.01
ACGTcount: A:0.44, C:0.01, G:0.04, T:0.51
Consensus pattern (37 bp):
ATATTAAGAATTTTATTAAATTATATAAGAATATTTA
Done.