Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 239 of 349
Found at i:79076944 original size:26 final size:26
Alignment explanation
Indices: 79076915--79077073 Score: 85
Period size: 26 Copynumber: 6.5 Consensus size: 26
79076905 TATATTTTTA
79076915 TTAAATTATATTTAATAATAATTATT
1 TTAAATTATATTTAATAATAATTATT
*
79076941 TTAAATTATA-TT-AT-AT-AGTATT
1 TTAAATTATATTTAATAATAATTATT
* * * *
79076963 ATATATTATGATTTTATTA-AATTCA-T
1 TTAAATTAT-ATTTAATAATAATT-ATT
* * **
79076989 ATAAGA--ATATTTAATATTAAGAATT
1 TTAA-ATTATATTTAATAATAATTATT
*
79077014 TT--ATTA-AATT-AT-ATATATT-TT
1 TTAAATTATATTTAATAATA-ATTATT
*
79077035 TTAAATTATATTTAATAATAATTATG
1 TTAAATTATATTTAATAATAATTATT
79077061 TTAAATTATATTT
1 TTAAATTATATTT
79077074 TATAGTATTA
Statistics
Matches: 98, Mismatches: 17, Indels: 36
0.65 0.11 0.24
Matches are distributed among these distances:
21 6 0.06
22 16 0.16
23 10 0.10
24 15 0.15
25 15 0.15
26 34 0.35
27 2 0.02
ACGTcount: A:0.43, C:0.01, G:0.03, T:0.53
Consensus pattern (26 bp):
TTAAATTATATTTAATAATAATTATT
Found at i:79076966 original size:120 final size:120
Alignment explanation
Indices: 79076827--79077129 Score: 554
Period size: 120 Copynumber: 2.5 Consensus size: 120
79076817 ATTATTAATC
79076827 TATATTATATAGTATTATATATTATGATTTTATTAAATTCATATAAGAATATTTAATATTAAGAA
1 TATATTATATAGTATTATATATTATGATTTTATTAAATTCATATAAGAATATTTAATATTAAGAA
*
79076892 TTTTATTAAATTATATAT-TTTTATTAAATTATATTTAATAATAATTATTTTAAAT
66 TTTTATTAAATTATATATATTTT-TTAAATTATATTTAATAATAATTATGTTAAAT
79076947 TATATTATATAGTATTATATATTATGATTTTATTAAATTCATATAAGAATATTTAATATTAAGAA
1 TATATTATATAGTATTATATATTATGATTTTATTAAATTCATATAAGAATATTTAATATTAAGAA
79077012 TTTTATTAAATTATATATATTTTTTAAATTATATTTAATAATAATTATGTTAAAT
66 TTTTATTAAATTATATATATTTTTTAAATTATATTTAATAATAATTATGTTAAAT
* **
79077067 TATATTTTATAGTATTATATATTATGATTTTAAAAAATTCATATAAGAATATTTAATATTAAG
1 TATATTATATAGTATTATATATTATGATTTTATTAAATTCATATAAGAATATTTAATATTAAG
79077130 TTTTTTTCTA
Statistics
Matches: 178, Mismatches: 4, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
120 174 0.98
121 4 0.02
ACGTcount: A:0.44, C:0.01, G:0.04, T:0.51
Consensus pattern (120 bp):
TATATTATATAGTATTATATATTATGATTTTATTAAATTCATATAAGAATATTTAATATTAAGAA
TTTTATTAAATTATATATATTTTTTAAATTATATTTAATAATAATTATGTTAAAT
Found at i:79077366 original size:37 final size:35
Alignment explanation
Indices: 79077325--79077494 Score: 100
Period size: 37 Copynumber: 4.7 Consensus size: 35
79077315 TAGTATCATA
*
79077325 TATTATGATTTTAGTAAATTCATATAAGAATATTGAT
1 TATTATGATTTTAGTAAATT-ATATAA-AATATTAAT
* * *
79077362 TATTAAGAATTTTATTAAATTATAT---ATTTTAAT
1 TATTATG-ATTTTAGTAAATTATATAAAATATTAAT
* * * *
79077395 TATAAT-ATATTTAATAATAATTATGTTAAATTATCT-A-
1 TATTATGAT-TTTAGT-A-AATTAT-ATAAAATAT-TAAT
*
79077432 TATTATGATTTGAGTAAATTCATATAAGAATATTAAT
1 TATTATGATTTTAGTAAATT-ATATAA-AATATTAAT
* *
79077469 TATTAAGAATTTTATTAAATTATATA
1 TATTATG-ATTTTAGTAAATTATATA
79077495 TTTTAATTAT
Statistics
Matches: 100, Mismatches: 18, Indels: 30
0.68 0.12 0.20
Matches are distributed among these distances:
31 2 0.02
32 5 0.05
33 11 0.11
34 6 0.06
35 9 0.09
36 8 0.08
37 30 0.30
38 28 0.28
39 1 0.01
ACGTcount: A:0.44, C:0.02, G:0.06, T:0.48
Consensus pattern (35 bp):
TATTATGATTTTAGTAAATTATATAAAATATTAAT
Found at i:79077404 original size:16 final size:16
Alignment explanation
Indices: 79077383--79077428 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
79077373 TTATTAAATT
79077383 ATATATTTTAATTATA
1 ATATATTTTAATTATA
*
79077399 ATATA-TTTAATAATA
1 ATATATTTTAATTATA
*
79077414 AT-TATGTTAAATTAT
1 ATATAT-TTTAATTAT
79077429 CTATATTATG
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
14 2 0.08
15 11 0.44
16 12 0.48
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATTATA
Found at i:79077416 original size:120 final size:118
Alignment explanation
Indices: 79077277--79077525 Score: 308
Period size: 107 Copynumber: 2.2 Consensus size: 118
79077267 ATACTTGTGG
* * *
79077277 AAATATTTTTAATATTAATTATTTCAAATTATATTTTATAGTATCATATATTATGATTTTAGTAA
1 AAATATATTTAATAATAATTATTT-AAATTATATTATATAGTATCATATATTATGATTTTAGTAA
* *
79077342 ATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATTATATATTTTAATT
65 ATTCATATAAGAATATTTAATATTAAGAATTTTATTAAATTATATATTTTAATT
* *
79077396 ATAATATATTTAATAATAATTA--T---GT-TA--A-AT--TATC-TATATTATGATTTGAGTAA
1 A-AATATATTTAATAATAATTATTTAAATTATATTATATAGTATCATATATTATGATTTTAGTAA
79077449 ATTCATATAAGAATA-TTAATTATTAAGAATTTTATTAAATTATATATTTTAATT
65 ATTCATATAAGAATATTTAA-TATTAAGAATTTTATTAAATTATATATTTTAATT
79077503 ATAATATATTTAATAATAATTAT
1 A-AATATATTTAATAATAATTAT
79077526 GTTTAAATAT
Statistics
Matches: 120, Mismatches: 7, Indels: 17
0.83 0.05 0.12
Matches are distributed among these distances:
106 2 0.02
107 89 0.74
108 4 0.03
110 2 0.02
113 2 0.02
114 1 0.01
118 1 0.01
119 1 0.01
120 18 0.15
ACGTcount: A:0.43, C:0.02, G:0.05, T:0.50
Consensus pattern (118 bp):
AAATATATTTAATAATAATTATTTAAATTATATTATATAGTATCATATATTATGATTTTAGTAAA
TTCATATAAGAATATTTAATATTAAGAATTTTATTAAATTATATATTTTAATT
Found at i:79077441 original size:107 final size:109
Alignment explanation
Indices: 79077318--79077533 Score: 400
Period size: 107 Copynumber: 2.0 Consensus size: 109
79077308 TATTTTATAG
* *
79077318 TATCATATATTATGATTTTAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATT
1 TATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
79077383 ATATATTTTAATTATAATATATTTAATAATAATTATG-TTAAAT
66 ATATATTTTAATTATAATATATTTAATAATAATTATGTTTAAAT
79077426 TATC-TATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
1 TATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
79077490 ATATATTTTAATTATAATATATTTAATAATAATTATGTTTAAAT
66 ATATATTTTAATTATAATATATTTAATAATAATTATGTTTAAAT
79077534 ATGATTAAAT
Statistics
Matches: 105, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
107 95 0.90
108 10 0.10
ACGTcount: A:0.44, C:0.02, G:0.06, T:0.49
Consensus pattern (109 bp):
TATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
ATATATTTTAATTATAATATATTTAATAATAATTATGTTTAAAT
Found at i:79077511 original size:16 final size:16
Alignment explanation
Indices: 79077490--79077531 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
79077480 TTATTAAATT
*
79077490 ATATATTTTAATTATA
1 ATATATTTTAATAATA
79077506 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
79077521 AT-TATGTTTAA
1 ATATAT-TTTAA
79077532 ATATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:79077516 original size:15 final size:15
Alignment explanation
Indices: 79077481--79077522 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
79077471 TTAAGAATTT
*
79077481 TATTAAATTAT-ATA
1 TATTTAATTATAATA
79077495 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
79077509 TATTTAATAATAAT
1 TATTTAATTATAAT
79077523 TATGTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:79077546 original size:75 final size:75
Alignment explanation
Indices: 79077466--79077704 Score: 171
Period size: 75 Copynumber: 3.1 Consensus size: 75
79077456 TAAGAATATT
79077466 AATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTTA
1 AATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTTA
79077531 AATATGATTA
66 AATATGATTA
* ** * * * ** ** * * *
79077541 AATTATTTATTATTGATATT-AATAATCTTATTAAAATT-TAA-ATA-ACAATAACAATAATAAT
1 AATTATTAAGAATT-TTATTAAATTAT-ATATTTTAATTATAATATATTTAATAATAATTAT-GT
* ** *
79077602 TTACCAAAACAAATTTCTGCT
63 TTA--AATA-TGA--T-T--A
* *
79077623 AATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATAGATTTAATAATAATTATGTTTA
1 AATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTTA
79077688 AATATGATTA
66 AATATGATTA
*
79077698 AAATATT
1 AATTATT
79077705 TATTATTGAT
Statistics
Matches: 112, Mismatches: 37, Indels: 30
0.63 0.21 0.17
Matches are distributed among these distances:
73 10 0.09
74 7 0.06
75 25 0.22
76 15 0.13
77 2 0.02
78 1 0.01
79 1 0.01
80 2 0.02
81 15 0.13
82 18 0.16
83 6 0.05
84 10 0.09
ACGTcount: A:0.47, C:0.03, G:0.04, T:0.46
Consensus pattern (75 bp):
AATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTTA
AATATGATTA
Found at i:79077637 original size:157 final size:157
Alignment explanation
Indices: 79077465--79077781 Score: 571
Period size: 157 Copynumber: 2.0 Consensus size: 157
79077455 ATAAGAATAT
* *
79077465 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATAGATTTAATAATAATTATGTTT
* *
79077530 AAATATGATTAAATTATTTATTATTGATATTAATAATCTTATTAAAATTTAAATAACAATAACAA
66 AAATATGATTAAAATATTTATTATTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAA
*
79077595 TAATAATTTACCAAAACAAATTTCTGC
131 TAATAATTTACCAAAACAAATTTATGC
79077622 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATAGATTTAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATAGATTTAATAATAATTATGTTT
79077687 AAATATGATTAAAATATTTATTATTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAA
66 AAATATGATTAAAATATTTATTATTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAA
* *
79077752 TAATCATTTACTAAAACAAATTTATGC
131 TAATAATTTACCAAAACAAATTTATGC
79077779 TAA
1 TAA
79077782 GGGTATTCTA
Statistics
Matches: 153, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
157 153 1.00
ACGTcount: A:0.48, C:0.05, G:0.03, T:0.44
Consensus pattern (157 bp):
TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATAGATTTAATAATAATTATGTTT
AAATATGATTAAAATATTTATTATTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAA
TAATAATTTACCAAAACAAATTTATGC
Found at i:79077925 original size:16 final size:16
Alignment explanation
Indices: 79077904--79077971 Score: 127
Period size: 16 Copynumber: 4.2 Consensus size: 16
79077894 GATTTGCTAT
79077904 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
79077920 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
*
79077936 TACACCTCCAATCCAA
1 TACACCTCTAATCCAA
79077952 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
79077968 TACA
1 TACA
79077972 GCGAACCAAA
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 50 1.00
ACGTcount: A:0.38, C:0.38, G:0.00, T:0.24
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:79083065 original size:19 final size:21
Alignment explanation
Indices: 79083038--79083097 Score: 63
Period size: 21 Copynumber: 3.0 Consensus size: 21
79083028 TAATAAAATT
*
79083038 TTAATTTTAA-TTTA-TATAA
1 TTAAATTTAATTTTATTATAA
79083057 TTAAATTTAATTTTATTATAA
1 TTAAATTTAATTTTATTATAA
**
79083078 TGTAAAAATAATTTT-TTATA
1 T-TAAATTTAATTTTATTATA
79083098 TTCACAATAA
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
19 9 0.26
20 4 0.11
21 11 0.31
22 11 0.31
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (21 bp):
TTAAATTTAATTTTATTATAA
Found at i:79083715 original size:44 final size:43
Alignment explanation
Indices: 79083630--79083717 Score: 122
Period size: 43 Copynumber: 2.0 Consensus size: 43
79083620 TATATACTAG
** * *
79083630 TCTTTCAAATGTTGTGTTTGGCAATGCCTTGATGTAACCACCC
1 TCTTTCAAACATTGTGGTTGGAAATGCCTTGATGTAACCACCC
*
79083673 TCTTTCAAACATTGTGGTTGGAAATGTCTTTGATGTAACCACCC
1 TCTTTCAAACATTGTGGTTGGAAATG-CCTTGATGTAACCACCC
79083717 T
1 T
79083718 TCAATTGAGT
Statistics
Matches: 39, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
43 22 0.56
44 17 0.44
ACGTcount: A:0.23, C:0.22, G:0.18, T:0.38
Consensus pattern (43 bp):
TCTTTCAAACATTGTGGTTGGAAATGCCTTGATGTAACCACCC
Found at i:79087223 original size:39 final size:40
Alignment explanation
Indices: 79087128--79087350 Score: 248
Period size: 39 Copynumber: 5.7 Consensus size: 40
79087118 TTGAATGATG
*
79087128 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
79087166 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
*
79087207 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAA-
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* * *
79087245 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
79087285 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
79087324 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
79087351 AACGAGGAGC
Statistics
Matches: 164, Mismatches: 10, Indels: 19
0.85 0.05 0.10
Matches are distributed among these distances:
38 10 0.06
39 71 0.43
40 71 0.43
41 11 0.07
42 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:79087262 original size:78 final size:80
Alignment explanation
Indices: 79087128--79087350 Score: 294
Period size: 78 Copynumber: 2.8 Consensus size: 80
79087118 TTGAATGATG
* * * *
79087128 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGACAATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATATCCGGGCTAAG-TCCCGAAGGCAT
*
79087190 TTGTGCGAGATACTAAT
64 TTGTGCGAGATACTAAA
*
79087207 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-ATCCGGGTTAAGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTT
*
79087270 GTGCGAGTTACTAAA
66 GTGCGAGATACTAAA
* * * *
79087285 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTT
79087350 G
66 G
79087351 AACGAGGAGC
Statistics
Matches: 127, Mismatches: 12, Indels: 9
0.86 0.08 0.06
Matches are distributed among these distances:
77 1 0.01
78 54 0.43
79 42 0.33
80 30 0.24
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTT
GTGCGAGATACTAAA
Found at i:79087364 original size:40 final size:39
Alignment explanation
Indices: 79087129--79087350 Score: 256
Period size: 40 Copynumber: 5.6 Consensus size: 39
79087119 TGAATGATGT
* *
79087129 CCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAA-A
* * *
79087167 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAATT
1 -CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA-A
*
79087208 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
79087246 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
79087285 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
79087326 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
79087351 AACGAGGAGC
Statistics
Matches: 163, Mismatches: 12, Indels: 15
0.86 0.06 0.08
Matches are distributed among these distances:
38 10 0.06
39 69 0.42
40 73 0.45
41 11 0.07
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:79087372 original size:79 final size:79
Alignment explanation
Indices: 79087128--79087383 Score: 231
Period size: 79 Copynumber: 3.3 Consensus size: 79
79087118 TTGAATGATG
* * * *
79087128 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATATCCGGACTAAGAT-CCGAAGGCA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAA-TTACTAA-A-CCGGGCTAAG-TCCCGAAGGCA
** *
79087189 TTTGTGCGAGAT-ACTAAT
62 TTTGAACGAG-TGACTAAA
* * * *
79087207 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAATCCGGGTTAAGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTAAACCGGGCTAAGTCCCGAAGGCATTTG
** *
79087271 TGCGAGTTACTAAA
66 AACGAGTGACTAAA
*
79087285 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTA-AACCGGGCTAAGTCCCGAAGGCATTT
*
79087350 GAACGAG-GAGCTATA
65 GAACGAGTGA-CTAAA
* *
79087365 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
79087384 TACGTGATTT
Statistics
Matches: 151, Mismatches: 18, Indels: 16
0.82 0.10 0.09
Matches are distributed among these distances:
77 2 0.01
78 51 0.34
79 54 0.36
80 44 0.29
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTAAACCGGGCTAAGTCCCGAAGGCATTTG
AACGAGTGACTAAA
Found at i:79095175 original size:77 final size:78
Alignment explanation
Indices: 79095056--79095275 Score: 256
Period size: 77 Copynumber: 2.8 Consensus size: 78
79095046 TTGAATGCTG
* *
79095056 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC--AATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGT-ACTAAATCCGGGCTAAG-TCCCGAAGGCAT
*
79095117 TTGTGCGAGATACTAAT
62 TTGTGCGAGATACTAAA
*
79095134 TCCGGGCTAAG-CCGAAGGCATTTGTGCGAGTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGT
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGT
*
79095198 GCGAGTTACTAAA
66 GCGAGATACTAAA
* * *
79095211 TCCGGGTTAAGTCCCGAAGGCA-TTGTGCGAATTACTATAA-CCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCG-AGTACTA-AATCCGGGCTAAGTCCCGAAGGCATT
79095274 TG
63 TG
79095276 AACGAGGAGC
Statistics
Matches: 125, Mismatches: 9, Indels: 15
0.84 0.06 0.10
Matches are distributed among these distances:
75 2 0.02
76 12 0.10
77 53 0.42
78 18 0.14
79 38 0.30
80 2 0.02
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (78 bp):
TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGT
GCGAGATACTAAA
Found at i:79095199 original size:39 final size:39
Alignment explanation
Indices: 79095056--79095275 Score: 258
Period size: 39 Copynumber: 5.7 Consensus size: 39
79095046 TTGAATGCTG
*
79095056 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC--AA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGT-ACTAAA
* *
79095094 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAG-TACTAAA
79095134 TCCGGGCTAAG--CCGAAGGCATTTGTGCGAGTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTAAA
*
79095171 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTAAA
* *
79095211 TCCGGGTTAAGTCCCGAAGGCA-TTGTGCGAATTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCG-AGTACTA-AA
*
79095251 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
79095276 AACGAGGAGC
Statistics
Matches: 162, Mismatches: 9, Indels: 20
0.85 0.05 0.10
Matches are distributed among these distances:
37 16 0.10
38 41 0.25
39 59 0.36
40 46 0.28
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTAAA
Found at i:79095293 original size:79 final size:78
Alignment explanation
Indices: 79095145--79095308 Score: 190
Period size: 79 Copynumber: 2.1 Consensus size: 78
79095135 CCGGGCTAAG
* ** *
79095145 CCGAAGGCATTTGTGCGAGTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTAA
*
79095210 ATCCGGGTTAAGTC
66 ATCC-GGTTAAATC
* *
79095224 CCGAAGGCA-TTGTGCGAATTACTATAA-CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGC
1 CCGAAGGCATTTGTGCG-AGTACTA-AATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGA-C
* *
79095286 TATATCCGGTTAAATT
63 TAAATCCGGTTAAATC
79095302 CCGAAGG
1 CCGAAGG
79095309 TACGTGATTT
Statistics
Matches: 73, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
78 22 0.30
79 49 0.67
80 2 0.03
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (78 bp):
CCGAAGGCATTTGTGCGAGTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTAA
ATCCGGTTAAATC
Found at i:79098150 original size:40 final size:40
Alignment explanation
Indices: 79098095--79098400 Score: 419
Period size: 40 Copynumber: 7.7 Consensus size: 40
79098085 TGAGCATTGG
79098095 AATATATCCGGGGCTAAGACCCGAAGGCAATTATGCGAG-T
1 AATATATCC-GGGCTAAGACCCGAAGGCAATTATGCGAGTT
79098135 AATATATCCGGGGCTAAGACCCGAAGGCAATTATGCGAGTT
1 AATATATCC-GGGCTAAGACCCGAAGGCAATTATGCGAGTT
*
79098176 AATATATCCGGGCTAAGACCCGAATGCAATTATGCGAGTT
1 AATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
79098216 AA-ATATCC-GGCTAAGGA-CCGAAGGCAATTATGCCGAG-T
1 AATATATCCGGGCTAA-GACCCGAAGGCAATTATG-CGAGTT
*
79098254 GATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
1 AATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
* * * *
79098294 AATATGTCCGGGCTATGACCCGAA-GCCATTATGCGAGAT
1 AATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
* *
79098333 GATATTATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTT
1 AATA-TATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
* * *
79098374 GATATGTCCGGGTTAAGA-CCGAAGGCA
1 AATATATCCGGGCTAAGACCCGAAGGCA
79098401 CATGTGTTTG
Statistics
Matches: 241, Mismatches: 16, Indels: 19
0.87 0.06 0.07
Matches are distributed among these distances:
38 22 0.09
39 49 0.20
40 144 0.60
41 26 0.11
ACGTcount: A:0.31, C:0.20, G:0.26, T:0.22
Consensus pattern (40 bp):
AATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
Found at i:79098267 original size:118 final size:119
Alignment explanation
Indices: 79098098--79098400 Score: 436
Period size: 118 Copynumber: 2.5 Consensus size: 119
79098088 GCATTGGAAT
*
79098098 ATATCCGGGGCTAAGACCCGAAGGCAATTATGCGAGTAATATATCCGGGGCTAAGACCCGAAGGC
1 ATATCC-GGGCTAAGACCCGAAGGCAATTATGCGAGTGATATATCC-GGGCTAAGACCCGAAGGC
*
79098163 AATTATGCGAGTTAATATATCCGGGCTAAGACCCGAATGCAATTATGCGAG-TTA-A
64 AATTATGCGAGTTAATATATCCGGGCTAAGACCCGAA-GCAATTATGCGAGATGATA
79098218 ATATCC-GGCTAAGGA-CCGAAGGCAATTATGCCGAGTGATATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAA-GACCCGAAGGCAATTATG-CGAGTGATATATCCGGGCTAAGACCCGAAGGC
* * *
79098281 AATTATGCGAGTTAATATGTCCGGGCTATGACCCGAAGCCATTATGCGAGATGATA
64 AATTATGCGAGTTAATATATCCGGGCTAAGACCCGAAGCAATTATGCGAGATGATA
* * * *
79098337 TTATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTGATATGTCCGGGTTAAGA-CCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCGAG-TGATATATCCGGGCTAAGACCCGAAGGCA
79098401 CATGTGTTTG
Statistics
Matches: 167, Mismatches: 9, Indels: 15
0.87 0.05 0.08
Matches are distributed among these distances:
117 12 0.07
118 76 0.46
119 35 0.21
120 44 0.26
ACGTcount: A:0.31, C:0.20, G:0.27, T:0.22
Consensus pattern (119 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTGATATATCCGGGCTAAGACCCGAAGGCAA
TTATGCGAGTTAATATATCCGGGCTAAGACCCGAAGCAATTATGCGAGATGATA
Found at i:79103078 original size:40 final size:39
Alignment explanation
Indices: 79102963--79103260 Score: 441
Period size: 40 Copynumber: 7.7 Consensus size: 39
79102953 CAAACACATG
* *
79102963 TGCCTTCGGGTCTTA-CCCGGACATATAACTTGCATAAT
1 TGCCTTCGGGTCTTAGCCCGGATATATAACTCGCATAAT
79103001 TGCCCTTCGGGTCTTAGCCCGG--ATATAACTCGCATAAT
1 TG-CCTTCGGGTCTTAGCCCGGATATATAACTCGCATAAT
* *
79103039 TGCCTTCGGGTTCATAGCCCGGACATATAACTCGCATAAT
1 TGCCTTCGGG-TCTTAGCCCGGATATATAACTCGCATAAT
*
79103079 TG-CTTCGGGTCTTAG-CCGGACATATCAA-TCGCATAAT
1 TGCCTTCGGGTCTTAGCCCGGATATAT-AACTCGCATAAT
79103116 TGCCTTC-GGTCTTAGCCCGGATATATCAACTCGCATAAT
1 TGCCTTCGGGTCTTAGCCCGGATATAT-AACTCGCATAAT
79103155 TG-CTTCGGGTCTTAGCCCGGATATATTAACTCGCATAAT
1 TGCCTTCGGGTCTTAGCCCGGATATA-TAACTCGCATAAT
79103194 TGCCTTCGGGTCTTAGCCCGGATATATTAACTCGCATAAT
1 TGCCTTCGGGTCTTAGCCCGGATATA-TAACTCGCATAAT
79103234 TGCCTTCGGGTCTTAGCCCGGATATAT
1 TGCCTTCGGGTCTTAGCCCGGATATAT
79103261 TCCAATGCTC
Statistics
Matches: 244, Mismatches: 4, Indels: 23
0.90 0.01 0.08
Matches are distributed among these distances:
37 37 0.15
38 56 0.23
39 64 0.26
40 87 0.36
ACGTcount: A:0.22, C:0.26, G:0.20, T:0.31
Consensus pattern (39 bp):
TGCCTTCGGGTCTTAGCCCGGATATATAACTCGCATAAT
Found at i:79103161 original size:115 final size:117
Alignment explanation
Indices: 79102963--79103260 Score: 448
Period size: 115 Copynumber: 2.6 Consensus size: 117
79102953 CAAACACATG
* *
79102963 TGCCTTCGGGTCTTACCCGGACATATAACTTGCATAATTGCCCTTCGGGTCTTAGCCCGG--ATA
1 TGCCTTCGGGTCTTAGCCGGACATATAACTCGCATAATTG-CCTTCGGGTCTTAGCCCGGATATA
79103026 TAACTCGCATAATTGCCTTCGGGTTCATAGCCCGGACATA-TAACTCGCATAAT
65 TAACTCGCATAATTGCCTTCGGG-TCATAGCCCGGACATATTAACTCGCATAAT
79103079 TG-CTTCGGGTCTTAGCCGGACATATCAA-TCGCATAATTGCCTTC-GGTCTTAGCCCGGATATA
1 TGCCTTCGGGTCTTAGCCGGACATAT-AACTCGCATAATTGCCTTCGGGTCTTAGCCCGGATATA
* *
79103141 TCAACTCGCATAATTG-CTTCGGGTCTTAGCCCGGATATATTAACTCGCATAAT
65 T-AACTCGCATAATTGCCTTCGGGTCATAGCCCGGACATATTAACTCGCATAAT
*
79103194 TGCCTTCGGGTCTTAGCCCGGATATATTAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGATAT
1 TGCCTTCGGGTCTTAG-CCGGACATA-TAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGATAT
79103259 AT
64 AT
79103261 TCCAATGCTC
Statistics
Matches: 167, Mismatches: 5, Indels: 17
0.88 0.03 0.09
Matches are distributed among these distances:
113 13 0.08
114 19 0.11
115 58 0.35
116 31 0.19
117 10 0.06
118 17 0.10
119 19 0.11
ACGTcount: A:0.22, C:0.26, G:0.20, T:0.31
Consensus pattern (117 bp):
TGCCTTCGGGTCTTAGCCGGACATATAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGATATAT
AACTCGCATAATTGCCTTCGGGTCATAGCCCGGACATATTAACTCGCATAAT
Found at i:79111511 original size:40 final size:40
Alignment explanation
Indices: 79111464--79111771 Score: 535
Period size: 40 Copynumber: 7.7 Consensus size: 40
79111454 CAAACACATG
* * * *
79111464 TGCCTTCGGGTCTTAACCCGGACATATCAACTTGCATAAT
1 TGCCTTCGGGTCTTAGCCCGGATATATTAACTCGCATAAT
* *
79111504 TGCCTTCGGGTCTTAGCCCGGATATATCATCTCGCATAAT
1 TGCCTTCGGGTCTTAGCCCGGATATATTAACTCGCATAAT
* *
79111544 TGCCTTCGGGTCATAGCCCGGACATATTAACTCGCATAAT
1 TGCCTTCGGGTCTTAGCCCGGATATATTAACTCGCATAAT
*
79111584 TGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAAT
1 TGCCTTCGGGTCTTAGCCCGGATATATTAACTCGCATAAT
79111624 TGCCTTCGGGTCTTAGCCCGGATATATTAACTCGCATAAT
1 TGCCTTCGGGTCTTAGCCCGGATATATTAACTCGCATAAT
79111664 TGCCTTCGGGTCTTAGCCCGGATATATTAACTCGCATAAT
1 TGCCTTCGGGTCTTAGCCCGGATATATTAACTCGCATAAT
79111704 TGCCTTCGGGTCTTAGCCCGGATATATTAACTCGCATAAT
1 TGCCTTCGGGTCTTAGCCCGGATATATTAACTCGCATAAT
79111744 TGCCTTCGGGTCTTAGCCCGGATATATT
1 TGCCTTCGGGTCTTAGCCCGGATATATT
79111772 CCAATGCTCA
Statistics
Matches: 256, Mismatches: 12, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 256 1.00
ACGTcount: A:0.22, C:0.26, G:0.20, T:0.31
Consensus pattern (40 bp):
TGCCTTCGGGTCTTAGCCCGGATATATTAACTCGCATAAT
Found at i:79118772 original size:19 final size:19
Alignment explanation
Indices: 79118733--79118773 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
79118723 AGACAAGAAC
* *
79118733 AATCAAAAGAAAATGTCAA
1 AATCAAAAGAAAATATAAA
79118752 AATCAAAAGAAAATATAAA
1 AATCAAAAGAAAATATAAA
79118771 AAT
1 AAT
79118774 TTGCTGCTGT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.68, C:0.07, G:0.07, T:0.17
Consensus pattern (19 bp):
AATCAAAAGAAAATATAAA
Found at i:79124969 original size:24 final size:24
Alignment explanation
Indices: 79124924--79125010 Score: 70
Period size: 24 Copynumber: 3.6 Consensus size: 24
79124914 TCCGGGCTGT
79124924 ATAACAGGAAGCTCATAAGAG-CA
1 ATAACAGGAAGCTCATAAGAGCCA
* **
79124947 ATAATCAGGAAGCTCGTGTGAGCCA
1 ATAA-CAGGAAGCTCATAAGAGCCA
* *
79124972 ATAACGGGTAGCTC-TAAAGAGCCA
1 ATAACAGGAAGCTCAT-AAGAGCCA
* *
79124996 TTAATCAGAAAGCTC
1 ATAA-CAGGAAGCTC
79125011 CAGATAGCCA
Statistics
Matches: 49, Mismatches: 11, Indels: 6
0.74 0.17 0.09
Matches are distributed among these distances:
23 5 0.10
24 31 0.63
25 13 0.27
ACGTcount: A:0.39, C:0.20, G:0.23, T:0.18
Consensus pattern (24 bp):
ATAACAGGAAGCTCATAAGAGCCA
Found at i:79125128 original size:25 final size:25
Alignment explanation
Indices: 79125050--79125129 Score: 90
Period size: 26 Copynumber: 3.2 Consensus size: 25
79125040 GAGCCATATT
*
79125050 GGGAAGCTCCGAAAAGCCATTAATC
1 GGGAAGCTCCGAAGAGCCATTAATC
* * *
79125075 AGGAAGCTCACAAAGAGCCTTTAATC
1 GGGAAGCTC-CGAAGAGCCATTAATC
*
79125101 GGGAAGCTCTGAAGAGCCATATAA-C
1 GGGAAGCTCCGAAGAGCCAT-TAATC
79125126 GGGA
1 GGGA
79125130 CACTCATAAG
Statistics
Matches: 45, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
25 21 0.47
26 24 0.53
ACGTcount: A:0.36, C:0.21, G:0.26, T:0.16
Consensus pattern (25 bp):
GGGAAGCTCCGAAGAGCCATTAATC
Found at i:79132562 original size:40 final size:40
Alignment explanation
Indices: 79132502--79132577 Score: 134
Period size: 40 Copynumber: 1.9 Consensus size: 40
79132492 CGTTAGTACG
* *
79132502 AGAATCGGCTAAACTGTAGCTCTGATACCAATAAATATGA
1 AGAATCAGCTAAACTATAGCTCTGATACCAATAAATATGA
79132542 AGAATCAGCTAAACTATAGCTCTGATACCAATAAAT
1 AGAATCAGCTAAACTATAGCTCTGATACCAATAAAT
79132578 GTAACACTCC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 34 1.00
ACGTcount: A:0.42, C:0.18, G:0.14, T:0.25
Consensus pattern (40 bp):
AGAATCAGCTAAACTATAGCTCTGATACCAATAAATATGA
Found at i:79134018 original size:27 final size:26
Alignment explanation
Indices: 79133978--79134121 Score: 111
Period size: 25 Copynumber: 5.7 Consensus size: 26
79133968 CTTAGACGAG
* * *
79133978 CATATCAATGGGAAGCTCTCTCTTAAGC
1 CATAT-AACGGGAAGCTCTATC-TGAGC
*
79134006 CATATAACGGGAAGCTC-ATGTGAGC
1 CATATAACGGGAAGCTCTATCTGAGC
* *
79134031 CATGTAACGGGAAGCT-TATCTGGGC
1 CATATAACGGGAAGCTCTATCTGAGC
* **
79134056 TATATAACGGGAAGCTC-ATAAGAGC
1 CATATAACGGGAAGCTCTATCTGAGC
* *
79134081 CATA-AACAGGAAGCTC-ATGTGAGC
1 CATATAACGGGAAGCTCTATCTGAGC
* *
79134105 CA-ATAATGGGTAGCTCT
1 CATATAACGGGAAGCTCT
79134122 GAAGAGCCCT
Statistics
Matches: 93, Mismatches: 19, Indels: 11
0.76 0.15 0.09
Matches are distributed among these distances:
23 1 0.01
24 28 0.30
25 47 0.51
26 1 0.01
27 11 0.12
28 5 0.05
ACGTcount: A:0.32, C:0.20, G:0.25, T:0.23
Consensus pattern (26 bp):
CATATAACGGGAAGCTCTATCTGAGC
Found at i:79134038 original size:25 final size:25
Alignment explanation
Indices: 79134003--79134120 Score: 132
Period size: 25 Copynumber: 4.8 Consensus size: 25
79133993 CTCTCTCTTA
79134003 AGCCATATAACGGGAAGCTCATGTG
1 AGCCATATAACGGGAAGCTCATGTG
* * *
79134028 AGCCATGTAACGGGAAGCTTATCTG
1 AGCCATATAACGGGAAGCTCATGTG
* * **
79134053 GGCTATATAACGGGAAGCTCATAAG
1 AGCCATATAACGGGAAGCTCATGTG
*
79134078 AGCCATA-AACAGGAAGCTCATGTG
1 AGCCATATAACGGGAAGCTCATGTG
* *
79134102 AGCCA-ATAATGGGTAGCTC
1 AGCCATATAACGGGAAGCTC
79134121 TGAAGAGCCC
Statistics
Matches: 75, Mismatches: 17, Indels: 3
0.79 0.18 0.03
Matches are distributed among these distances:
23 1 0.01
24 28 0.37
25 46 0.61
ACGTcount: A:0.33, C:0.19, G:0.27, T:0.20
Consensus pattern (25 bp):
AGCCATATAACGGGAAGCTCATGTG
Found at i:79137465 original size:25 final size:25
Alignment explanation
Indices: 79137436--79137490 Score: 110
Period size: 25 Copynumber: 2.2 Consensus size: 25
79137426 CAATACGGAT
79137436 GCTCGCAAGAACCATATAACGGGAA
1 GCTCGCAAGAACCATATAACGGGAA
79137461 GCTCGCAAGAACCATATAACGGGAA
1 GCTCGCAAGAACCATATAACGGGAA
79137486 GCTCG
1 GCTCG
79137491 AGAGGCCAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.36, C:0.25, G:0.25, T:0.13
Consensus pattern (25 bp):
GCTCGCAAGAACCATATAACGGGAA
Found at i:79139641 original size:41 final size:41
Alignment explanation
Indices: 79139596--79139693 Score: 115
Period size: 41 Copynumber: 2.4 Consensus size: 41
79139586 ATTGGCACAT
* * *
79139596 AGCCTACTAGGCTCAAAGCCTGATATGACACACCAGCACGA
1 AGCCTACTAAGCACAAAGCCTGATATAACACACCAGCACGA
* * * *
79139637 AGCCTACTAAGCACGAAGCCTGATATAATACACCTGTACGA
1 AGCCTACTAAGCACAAAGCCTGATATAACACACCAGCACGA
* *
79139678 AGCCTGCTATGCACAA
1 AGCCTACTAAGCACAA
79139694 TGTAACAGCC
Statistics
Matches: 47, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
41 47 1.00
ACGTcount: A:0.35, C:0.30, G:0.18, T:0.17
Consensus pattern (41 bp):
AGCCTACTAAGCACAAAGCCTGATATAACACACCAGCACGA
Found at i:79142879 original size:45 final size:43
Alignment explanation
Indices: 79142806--79142960 Score: 148
Period size: 45 Copynumber: 3.4 Consensus size: 43
79142796 ATGAGTGGAG
* * *
79142806 GATGTCATGGTGTCTTTCAACCATGGTCTTATTTATTCTCGACTT
1 GATGCCATAGTGTCTTTCAACCATGGTCTTATTCATT-T-GACTT
* *
79142851 GATGCCATAGTGTCTTTCAACCATGGTCTTATTCATTTTTTGTCAT
1 GATGCCATAGTGTCTTTCAACCATGGTCTTATTCA---TTTGACTT
* * * * * *
79142897 GTTGCCATAATGTCTTTCAACTATAGTCTTATTCGTTTGATTTGT
1 GATGCCATAGTGTCTTTCAACCATGGTCTTATTCATTTGA-CT-T
79142942 GATGCCATAGTGTCTTTCA
1 GATGCCATAGTGTCTTTCA
79142961 GATATGGTCT
Statistics
Matches: 90, Mismatches: 15, Indels: 10
0.78 0.13 0.09
Matches are distributed among these distances:
43 4 0.04
45 50 0.56
46 33 0.37
47 1 0.01
48 2 0.02
ACGTcount: A:0.19, C:0.19, G:0.17, T:0.45
Consensus pattern (43 bp):
GATGCCATAGTGTCTTTCAACCATGGTCTTATTCATTTGACTT
Found at i:79142971 original size:45 final size:43
Alignment explanation
Indices: 79142850--79143062 Score: 167
Period size: 45 Copynumber: 4.7 Consensus size: 43
79142840 ATTCTCGACT
* * *
79142850 TGATGCCATAGTGTCTTTCAACCATGGTCTTATTCATTTTTTG
1 TGATGCCATAGTGTCTTTCAACTATGGTCTTACTCGTTTTTTG
* * * *
79142893 TCATGTTGCCATAATGTCTTTCAACTATAGTCTTATTCGTTTGATTTG
1 ---TGATGCCATAGTGTCTTTCAACTATGGTCTTACTCGTTT--TTTG
*** *
79142941 TGATGCCATAGTGTCTTTCAGA-TATGGTCTTACTCGATAGAATCG
1 TGATGCCATAGTGTCTTTCA-ACTATGGTCTTACTCG-T-TTTTTG
*** * * *
79142986 TGATGCCATAACATCTTTCAGCTATGTTCTTACTCGTTTTTGGTA
1 TGATGCCATAGTGTCTTTCAACTATGGTCTTACTCGTTTTT--TG
*
79143031 TGGTGCCATAGTGTCTTTCAACTATGGTCTTA
1 TGATGCCATAGTGTCTTTCAACTATGGTCTTA
79143063 ATCATTTCCT
Statistics
Matches: 130, Mismatches: 29, Indels: 17
0.74 0.16 0.10
Matches are distributed among these distances:
43 1 0.01
44 1 0.01
45 88 0.68
46 36 0.28
48 4 0.03
ACGTcount: A:0.21, C:0.18, G:0.18, T:0.43
Consensus pattern (43 bp):
TGATGCCATAGTGTCTTTCAACTATGGTCTTACTCGTTTTTTG
Found at i:79145203 original size:20 final size:18
Alignment explanation
Indices: 79145156--79145204 Score: 57
Period size: 20 Copynumber: 2.7 Consensus size: 18
79145146 CAATATAAAC
79145156 ATTAAATTAA-ATTTAAT
1 ATTAAATTAATATTTAAT
79145173 ATTAAGA-TAATCATTTTAAT
1 ATTAA-ATTAAT-A-TTTAAT
79145193 ATTAAATTAATA
1 ATTAAATTAATA
79145205 AAATACTATT
Statistics
Matches: 27, Mismatches: 0, Indels: 8
0.77 0.00 0.23
Matches are distributed among these distances:
17 8 0.30
18 1 0.04
19 3 0.11
20 15 0.56
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.45
Consensus pattern (18 bp):
ATTAAATTAATATTTAAT
Found at i:79145250 original size:37 final size:36
Alignment explanation
Indices: 79145147--79145262 Score: 98
Period size: 37 Copynumber: 3.2 Consensus size: 36
79145137 GTTTACCTAC
* * *
79145147 AATATAAACATTAAATTAA-ATTTAA-TATTAAGAT
1 AATATTAATATTAAATTAATATTAAACTATTAAGAT
*
79145181 AATCATTTTAATATTAAATTAATA-AAATACTATTAAGAT
1 AAT-A--TTAATATTAAATTAATATTAA-ACTATTAAGAT
*
79145220 AAGTATTAA-ATTAAATTTAATATTAAACTA-TAAAAT
1 AA-TATTAATATTAAA-TTAATATTAAACTATTAAGAT
79145256 AATATTA
1 AATATTA
79145263 TTTTTGGAAT
Statistics
Matches: 67, Mismatches: 6, Indels: 17
0.74 0.07 0.19
Matches are distributed among these distances:
34 3 0.04
35 6 0.09
36 13 0.19
37 28 0.42
38 4 0.06
39 12 0.18
40 1 0.01
ACGTcount: A:0.54, C:0.03, G:0.03, T:0.40
Consensus pattern (36 bp):
AATATTAATATTAAATTAATATTAAACTATTAAGAT
Found at i:79150806 original size:25 final size:25
Alignment explanation
Indices: 79150778--79150859 Score: 98
Period size: 25 Copynumber: 3.3 Consensus size: 25
79150768 GTTCTGACCC
79150778 ATAGCTCATAGAAGCATATCGATTT
1 ATAGCTCATAGAAGCATATCGATTT
79150803 ATAGCTCATATG-AGCATA-CAGATTT
1 ATAGCTCATA-GAAGCATATC-GATTT
* *
79150828 ATAGCTCGTA-AGAGCATATCGATCT
1 ATAGCTCATAGA-AGCATATCGATTT
79150853 ATAGCTC
1 ATAGCTC
79150860 GAGTGAGCAT
Statistics
Matches: 50, Mismatches: 2, Indels: 10
0.81 0.03 0.16
Matches are distributed among these distances:
24 1 0.02
25 47 0.94
26 2 0.04
ACGTcount: A:0.34, C:0.18, G:0.17, T:0.30
Consensus pattern (25 bp):
ATAGCTCATAGAAGCATATCGATTT
Found at i:79150856 original size:50 final size:50
Alignment explanation
Indices: 79150777--79150895 Score: 143
Period size: 50 Copynumber: 2.4 Consensus size: 50
79150767 CGTTCTGACC
* *
79150777 CATAGCTCAT-AGAAGCATATCGATTTATAGCTC-ATATGAGCATACAGATT
1 CATAGCTCGTAAG-AGCATATCGATCTATAGCTCGA-ATGAGCATACAGATT
* * *
79150827 TATAGCTCGTAAGAGCATATCGATCTATAGCTCGAGTGAGCATACTGATT
1 CATAGCTCGTAAGAGCATATCGATCTATAGCTCGAATGAGCATACAGATT
* *
79150877 CATAGCTTGTATGAGCATA
1 CATAGCTCGTAAGAGCATA
79150896 CATGTTTATG
Statistics
Matches: 59, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
50 56 0.95
51 3 0.05
ACGTcount: A:0.33, C:0.18, G:0.19, T:0.30
Consensus pattern (50 bp):
CATAGCTCGTAAGAGCATATCGATCTATAGCTCGAATGAGCATACAGATT
Found at i:79150860 original size:25 final size:25
Alignment explanation
Indices: 79150790--79150895 Score: 101
Period size: 25 Copynumber: 4.2 Consensus size: 25
79150780 AGCTCATAGA
* *
79150790 AGCATATCGATTTATAGCTCATATG
1 AGCATATCGATTTATAGCTCGTAAG
79150815 AGCATA-CAGATTTATAGCTCGTAAG
1 AGCATATC-GATTTATAGCTCGTAAG
* *
79150840 AGCATATCGATCTATAGCTCG-AGTG
1 AGCATATCGATTTATAGCTCGTA-AG
* * *
79150865 AGCATA-CTGATTCATAGCTTGTATG
1 AGCATATC-GATTTATAGCTCGTAAG
79150890 AGCATA
1 AGCATA
79150896 CATGTTTATG
Statistics
Matches: 69, Mismatches: 7, Indels: 10
0.80 0.08 0.12
Matches are distributed among these distances:
24 3 0.04
25 64 0.93
26 2 0.03
ACGTcount: A:0.32, C:0.17, G:0.20, T:0.31
Consensus pattern (25 bp):
AGCATATCGATTTATAGCTCGTAAG
Found at i:79150896 original size:25 final size:25
Alignment explanation
Indices: 79150777--79150896 Score: 97
Period size: 25 Copynumber: 4.8 Consensus size: 25
79150767 CGTTCTGACC
*
79150777 CATAGCTCATA-GAAGCATA-TCGATT
1 CATAGCTCGTATG-AGCATACT-GATT
* * *
79150802 TATAGCTCATATGAGCATACAGATT
1 CATAGCTCGTATGAGCATACTGATT
* *
79150827 TATAGCTCGTAAGAGCATA-TCGA-T
1 CATAGCTCGTATGAGCATACT-GATT
79150851 CTATAGCTCG-AGTGAGCATACTGATT
1 C-ATAGCTCGTA-TGAGCATACTGATT
*
79150877 CATAGCTTGTATGAGCATAC
1 CATAGCTCGTATGAGCATAC
79150897 ATGTTTATGA
Statistics
Matches: 79, Mismatches: 8, Indels: 16
0.77 0.08 0.16
Matches are distributed among these distances:
24 2 0.03
25 72 0.91
26 5 0.06
ACGTcount: A:0.33, C:0.18, G:0.19, T:0.30
Consensus pattern (25 bp):
CATAGCTCGTATGAGCATACTGATT
Found at i:79152803 original size:43 final size:42
Alignment explanation
Indices: 79152699--79152846 Score: 127
Period size: 43 Copynumber: 3.5 Consensus size: 42
79152689 TATCCCAGAT
* * * *
79152699 ATGGTCTTACATGTTATCACATATCGATGTCACTGTCCCAGAC
1 ATGGTCTTACACGTAATCACATATCGATG-CAATGTCCAAGAC
* * ** * *
79152742 AGGGTCTTAAACAAAATCATATAACGATGCAAATGTCCAAGAC
1 ATGGTCTTACACGTAATCACATATCGATGC-AATGTCCAAGAC
* **
79152785 ATGGTCTTACACGTAATCACA-ATTCAATGCCAATGTCTTAGAC
1 ATGGTCTTACACGTAATCACATA-TCGATG-CAATGTCCAAGAC
*
79152828 ATGGTCTTACATGTAATCA
1 ATGGTCTTACACGTAATCA
79152847 TATCTCGGTA
Statistics
Matches: 82, Mismatches: 20, Indels: 6
0.76 0.19 0.06
Matches are distributed among these distances:
42 2 0.02
43 79 0.96
44 1 0.01
ACGTcount: A:0.34, C:0.22, G:0.16, T:0.29
Consensus pattern (42 bp):
ATGGTCTTACACGTAATCACATATCGATGCAATGTCCAAGAC
Found at i:79157556 original size:16 final size:15
Alignment explanation
Indices: 79157537--79157566 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
79157527 ATCTCCCCAA
79157537 CAAAAAAAATTGGAAC
1 CAAAAAAAA-TGGAAC
79157553 CAAAAAAAATGGAA
1 CAAAAAAAATGGAA
79157567 AAATATCTCA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.67, C:0.10, G:0.13, T:0.10
Consensus pattern (15 bp):
CAAAAAAAATGGAAC
Found at i:79157691 original size:18 final size:19
Alignment explanation
Indices: 79157653--79157696 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 19
79157643 GCCTCTTTCA
**
79157653 AAATAAAAATAATGGACAT
1 AAATAAAAATAAAAGACAT
79157672 AAATAAAAATAAAAGA-AT
1 AAATAAAAATAAAAGACAT
*
79157690 AACTAAA
1 AAATAAA
79157697 TATTTAGATT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
18 8 0.36
19 14 0.64
ACGTcount: A:0.70, C:0.05, G:0.07, T:0.18
Consensus pattern (19 bp):
AAATAAAAATAAAAGACAT
Found at i:79161421 original size:43 final size:41
Alignment explanation
Indices: 79161274--79161432 Score: 124
Period size: 43 Copynumber: 3.7 Consensus size: 41
79161264 TATGTGATAT
* * * *
79161274 CGTGTAAGATCACGTCTAGGACATTGGCATCGACTTTTGTTTTA
1 CGTGTAAGACCACGTCTGGGACAGTGGCAT-GA-TTTTG-ATTA
* * * * * * *
79161318 CGTGTAAGACCATGTCTGGGATATTGGCATCATATCTAATTT
1 CGTGTAAGACCACGTCTGGGACAGTGGCATGAT-TTTGATTA
79161360 CGTGTAAGACC-CTGTCTGGGACAGTGGCATAGATGTTTGATTA
1 CGTGTAAGACCAC-GTCTGGGACAGTGGCAT-GAT-TTTGATTA
*
79161403 CATGTAAGACCACGTCTGGGAC-GTAGGCAT
1 CGTGTAAGACCACGTCTGGGACAGT-GGCAT
79161433 TGTATATGCT
Statistics
Matches: 92, Mismatches: 18, Indels: 11
0.76 0.15 0.09
Matches are distributed among these distances:
42 31 0.34
43 34 0.37
44 27 0.29
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.31
Consensus pattern (41 bp):
CGTGTAAGACCACGTCTGGGACAGTGGCATGATTTTGATTA
Found at i:79166776 original size:23 final size:23
Alignment explanation
Indices: 79166750--79166794 Score: 90
Period size: 23 Copynumber: 2.0 Consensus size: 23
79166740 AATTAGATAT
79166750 GAAATGAGTTGTTATTTATACTC
1 GAAATGAGTTGTTATTTATACTC
79166773 GAAATGAGTTGTTATTTATACT
1 GAAATGAGTTGTTATTTATACT
79166795 TATTATGGTC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.31, C:0.07, G:0.18, T:0.44
Consensus pattern (23 bp):
GAAATGAGTTGTTATTTATACTC
Found at i:79173414 original size:28 final size:27
Alignment explanation
Indices: 79173357--79173508 Score: 232
Period size: 27 Copynumber: 5.6 Consensus size: 27
79173347 TAAATTGTGC
* *
79173357 AGCACTAAGTGTGCGAATTGAATATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
79173384 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
79173412 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
79173439 AGCACTAAGTGTGCGAGTATGATTATGT
1 AGCACTAAGTGTGCGAGT-TGACTATGT
* *
79173467 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
79173494 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
79173509 GACTTAATAA
Statistics
Matches: 118, Mismatches: 5, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
27 66 0.56
28 52 0.44
ACGTcount: A:0.28, C:0.13, G:0.29, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGACTATGT
Found at i:79173422 original size:55 final size:55
Alignment explanation
Indices: 79173357--79173508 Score: 241
Period size: 55 Copynumber: 2.8 Consensus size: 55
79173347 TAAATTGTGC
* *
79173357 AGCACTAAGTGTGCGAATTGAATATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCGAGTATGACTATGT
* *
79173412 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTATGATTATGT
1 AGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCGAGTATGACTATGT
* * *
79173467 AGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 AGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCG
79173509 GACTTAATAA
Statistics
Matches: 90, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
55 90 1.00
ACGTcount: A:0.28, C:0.13, G:0.29, T:0.30
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCGAGTATGACTATGT
Found at i:79181570 original size:28 final size:27
Alignment explanation
Indices: 79181513--79181664 Score: 232
Period size: 27 Copynumber: 5.6 Consensus size: 27
79181503 TAAATTGTGC
* *
79181513 AGCACTAAGTGTGCGAATTGAATATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
79181540 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
79181568 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
79181595 AGCACTAAGTGTGCGAGTATGATTATGT
1 AGCACTAAGTGTGCGAGT-TGACTATGT
* *
79181623 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
79181650 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
79181665 GACTTAATAA
Statistics
Matches: 118, Mismatches: 5, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
27 66 0.56
28 52 0.44
ACGTcount: A:0.28, C:0.13, G:0.29, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGACTATGT
Found at i:79181578 original size:55 final size:55
Alignment explanation
Indices: 79181513--79181664 Score: 241
Period size: 55 Copynumber: 2.8 Consensus size: 55
79181503 TAAATTGTGC
* *
79181513 AGCACTAAGTGTGCGAATTGAATATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCGAGTATGACTATGT
* *
79181568 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTATGATTATGT
1 AGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCGAGTATGACTATGT
* * *
79181623 AGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 AGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCG
79181665 GACTTAATAA
Statistics
Matches: 90, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
55 90 1.00
ACGTcount: A:0.28, C:0.13, G:0.29, T:0.30
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCGAGTATGACTATGT
Found at i:79185103 original size:92 final size:91
Alignment explanation
Indices: 79184935--79185121 Score: 347
Period size: 92 Copynumber: 2.0 Consensus size: 91
79184925 TATGTTCCGA
79184935 GTGTAAGCCTTTCTTATACTATTGCTTTGTTGTGAAATACATTTAATGAATGTCGAGAAGTGGAT
1 GTGTAAGCCTTTCTTATACTATTGCTTTGTTGTGAAATACATTTAATGAATGTCGAGAAGTGGAT
*
79185000 TGAGAAGTTGATATAATAGGTAATGT
66 TGAGAAATTGATATAATAGGTAATGT
*
79185026 GTGTAAGCCTTTCTTATACTGTTGCTTTGTTGTGAAATTACATTTAATGAATGTCGAGAAGTGGA
1 GTGTAAGCCTTTCTTATACTATTGCTTTGTTGTGAAA-TACATTTAATGAATGTCGAGAAGTGGA
79185091 TTGAGAAATTGATATAATAGGTAATGT
65 TTGAGAAATTGATATAATAGGTAATGT
79185118 GTGT
1 GTGT
79185122 GCATACTTGT
Statistics
Matches: 93, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
91 36 0.39
92 57 0.61
ACGTcount: A:0.30, C:0.07, G:0.24, T:0.39
Consensus pattern (91 bp):
GTGTAAGCCTTTCTTATACTATTGCTTTGTTGTGAAATACATTTAATGAATGTCGAGAAGTGGAT
TGAGAAATTGATATAATAGGTAATGT
Found at i:79190437 original size:13 final size:13
Alignment explanation
Indices: 79190419--79190443 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
79190409 AACAACGTCA
79190419 GACACGGCTGTGC
1 GACACGGCTGTGC
79190432 GACACGGCTGTG
1 GACACGGCTGTG
79190444 TACACCCACA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.28, G:0.40, T:0.16
Consensus pattern (13 bp):
GACACGGCTGTGC
Found at i:79211405 original size:21 final size:20
Alignment explanation
Indices: 79211376--79211415 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
79211366 CTTTGAAACA
*
79211376 AGGCACACGCCCGTGTGGAT
1 AGGCACACGCCCCTGTGGAT
79211396 AGGCAACACGCCCCTGTGGA
1 AGGC-ACACGCCCCTGTGGA
79211416 ATTTCAACAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.23, C:0.33, G:0.33, T:0.12
Consensus pattern (20 bp):
AGGCACACGCCCCTGTGGAT
Found at i:79213169 original size:29 final size:29
Alignment explanation
Indices: 79213136--79213209 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
79213126 GTTGTGAGAT
* *
79213136 TGGCACTAGGTGTGCGAACTTGAAA-TGCA
1 TGGCACTAAGTGTGCG-ACTTGAAAGTACA
* *
79213165 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGACTTGAAAGTACA
79213194 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
79213210 TGGTTGATGA
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
28 6 0.15
29 34 0.85
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGACTTGAAAGTACA
Found at i:79221234 original size:29 final size:29
Alignment explanation
Indices: 79221201--79221274 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
79221191 GTTGTGAGAT
* *
79221201 TGGCACTAGGTGTGCGAACTTGAAA-TGCA
1 TGGCACTAAGTGTGCG-ACTTGAAAGTACA
* *
79221230 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGACTTGAAAGTACA
79221259 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
79221275 TGGTTGATGA
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
28 6 0.15
29 34 0.85
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGACTTGAAAGTACA
Found at i:79223980 original size:49 final size:47
Alignment explanation
Indices: 79223871--79224087 Score: 147
Period size: 49 Copynumber: 4.6 Consensus size: 47
79223861 TAATGCCAAT
* * * * *
79223871 GCCATGTCCCAGACATGGTCTTACACTGGCTCATCCATCAAGTCGAT
1 GCCATGTCCCAGACATGGTCTTACACTGACTCATCAACCAAGCCGAC
*
79223918 GCCATGTCCCAGACATTGTCTTACACTGACT-ATCGAAACCAAGGCCGAC
1 GCCATGTCCCAGACATGGTCTTACACTGACTCATC--AACCAA-GCCGAC
* * * * ** * *
79223967 GCTATGTCCCAGACATGGTCTTACATTAGCTCTCA-CATATTCGTGCAGAT
1 GCCATGTCCCAGACATGGTCTTACACT-G-ACTCATCA-A-CCAAGCCGAC
* * **** *
79224017 GCCATGTCCCAGATATGGTCTTACACTGACACATC-TTGTAGCCGAT
1 GCCATGTCCCAGACATGGTCTTACACTGACTCATCAACCAAGCCGAC
79224063 G-CATGTCCCAGACAT-GTCTTACACT
1 GCCATGTCCCAGACATGGTCTTACACT
79224088 AGCACACAAA
Statistics
Matches: 135, Mismatches: 26, Indels: 21
0.74 0.14 0.12
Matches are distributed among these distances:
44 10 0.07
45 13 0.10
46 10 0.07
47 29 0.21
48 7 0.05
49 31 0.23
50 30 0.22
51 4 0.03
52 1 0.01
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.27
Consensus pattern (47 bp):
GCCATGTCCCAGACATGGTCTTACACTGACTCATCAACCAAGCCGAC
Found at i:79224095 original size:46 final size:47
Alignment explanation
Indices: 79223961--79224095 Score: 143
Period size: 50 Copynumber: 2.9 Consensus size: 47
79223951 CGAAACCAAG
* * *
79223961 GCCGACGCTATGTCCCAGACATGGTCTTACATTAGCTCTCACATATTCGT
1 GCCGATGC-ATGTCCCAGACATGGTCTTACACTAG--CACACATATTCGT
* * *
79224011 GCAGATGCCATGTCCCAGATATGGTCTTACACT-G-ACACATCTT-GT
1 GCCGATG-CATGTCCCAGACATGGTCTTACACTAGCACACATATTCGT
79224056 AGCCGATGCATGTCCCAGACAT-GTCTTACACTAGCACACA
1 -GCCGATGCATGTCCCAGACATGGTCTTACACTAGCACACA
79224096 AATAACCCAA
Statistics
Matches: 73, Mismatches: 8, Indels: 12
0.78 0.09 0.13
Matches are distributed among these distances:
44 10 0.14
45 16 0.22
46 18 0.25
49 1 0.01
50 27 0.37
51 1 0.01
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.27
Consensus pattern (47 bp):
GCCGATGCATGTCCCAGACATGGTCTTACACTAGCACACATATTCGT
Found at i:79230235 original size:43 final size:43
Alignment explanation
Indices: 79230187--79230273 Score: 174
Period size: 43 Copynumber: 2.0 Consensus size: 43
79230177 ATAATTAGTA
79230187 TAACACATGTTTACGATGAATTCCCTAGAACCATTCGAGGTGG
1 TAACACATGTTTACGATGAATTCCCTAGAACCATTCGAGGTGG
79230230 TAACACATGTTTACGATGAATTCCCTAGAACCATTCGAGGTGG
1 TAACACATGTTTACGATGAATTCCCTAGAACCATTCGAGGTGG
79230273 T
1 T
79230274 CGTGGCCATG
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.29
Consensus pattern (43 bp):
TAACACATGTTTACGATGAATTCCCTAGAACCATTCGAGGTGG
Found at i:79256586 original size:40 final size:40
Alignment explanation
Indices: 79256515--79256709 Score: 360
Period size: 40 Copynumber: 5.0 Consensus size: 40
79256505 TGCGAGATAC
79256515 TAAATCCGGGTTAAGT-CCGAAGGCATTCGTGCGAGTTGT
1 TAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGT
*
79256554 TAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCTAGTTGT
1 TAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGT
79256594 TAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGT
1 TAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGT
79256634 TAAATCCGGGTTAAGT-CCGAAGGCATTCGTGCGAGTTGT
1 TAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGT
79256673 TAAATCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTT
1 TAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT
79256710 AAGTCCCGAA
Statistics
Matches: 152, Mismatches: 2, Indels: 4
0.96 0.01 0.03
Matches are distributed among these distances:
39 64 0.42
40 88 0.58
ACGTcount: A:0.23, C:0.19, G:0.30, T:0.28
Consensus pattern (40 bp):
TAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGT
Found at i:79264578 original size:40 final size:40
Alignment explanation
Indices: 79264495--79264718 Score: 434
Period size: 40 Copynumber: 5.7 Consensus size: 40
79264485 GCGAGATACT
79264495 AATCCGGGTTAAGT-CCGAAGGCATTCGT-CGAGTTGTTA
1 AATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTA
79264533 AATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTA
1 AATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTA
79264573 AATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTA
1 AATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTA
79264613 AATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTA
1 AATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTA
79264653 AATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTA
1 AATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTA
79264693 AATCCGGGTTAAGTCCCGAAGGCATT
1 AATCCGGGTTAAGTCCCGAAGGCATT
79264719 GTGTTGTTAG
Statistics
Matches: 184, Mismatches: 0, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
38 14 0.08
39 14 0.08
40 156 0.85
ACGTcount: A:0.23, C:0.20, G:0.29, T:0.27
Consensus pattern (40 bp):
AATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTA
Found at i:79264783 original size:120 final size:120
Alignment explanation
Indices: 79264471--79264794 Score: 372
Period size: 120 Copynumber: 2.7 Consensus size: 120
79264461 GGACTAAGAT
* * * * * * ** *
79264471 CCGAAGGCCTTTGTGCGAGATACT-AATCCGGGTTAAGT-CCGAAGGCATTCG-TCGAGTTGTTA
1 CCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
79264533 AATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
66 AATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
** * * ** ** *
79264588 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTA
1 CCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
79264653 AATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
66 AATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
* * *
79264708 CCGAAGGCATT-GTGTTGTTAGTTACTAAAACCGGGCTATGT-CCGAAGGCATTTGAACGAGGAG
1 CCGAAGGCATTCGTG-CG--AGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAG
* *
79264771 CTATATCC-GGTTAAATCCCGAAGG
63 CTAAATCCGGGTTAAGTCCCGAAGG
79264795 TACGTGATTT
Statistics
Matches: 181, Mismatches: 20, Indels: 9
0.86 0.10 0.04
Matches are distributed among these distances:
117 19 0.10
118 14 0.08
119 16 0.09
120 92 0.51
121 23 0.13
122 17 0.09
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.27
Consensus pattern (120 bp):
CCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
AATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
Found at i:79266560 original size:23 final size:24
Alignment explanation
Indices: 79266515--79266575 Score: 79
Period size: 23 Copynumber: 2.5 Consensus size: 24
79266505 AACGTCAAAC
* * *
79266515 GATGATGGTGACTTGGTGTACGTCG
1 GATGGTGGTGAC-TGGTGGACGTCA
79266540 GATGGT-GTGACTGGTGGACGTCA
1 GATGGTGGTGACTGGTGGACGTCA
79266563 GATGGTGGTGACT
1 GATGGTGGTGACT
79266576 AACAGTAGGG
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
23 16 0.50
24 11 0.34
25 5 0.16
ACGTcount: A:0.16, C:0.11, G:0.43, T:0.30
Consensus pattern (24 bp):
GATGGTGGTGACTGGTGGACGTCA
Found at i:79267373 original size:19 final size:19
Alignment explanation
Indices: 79267351--79267396 Score: 65
Period size: 19 Copynumber: 2.4 Consensus size: 19
79267341 TATTTTTTTA
79267351 CTTTTTTTTTAACTTTTGT
1 CTTTTTTTTTAACTTTTGT
* * *
79267370 CTTTTTCTTTAATTTTTTT
1 CTTTTTTTTTAACTTTTGT
79267389 CTTTTTTT
1 CTTTTTTT
79267397 AAGTTTTATA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.09, C:0.11, G:0.02, T:0.78
Consensus pattern (19 bp):
CTTTTTTTTTAACTTTTGT
Found at i:79267429 original size:9 final size:9
Alignment explanation
Indices: 79267417--79267461 Score: 56
Period size: 9 Copynumber: 5.0 Consensus size: 9
79267407 TTTTTCTTAT
*
79267417 TTTATTTTG
1 TTTATTTTA
79267426 TTTA-TTTA
1 TTTATTTTA
79267434 TTTATTTTA
1 TTTATTTTA
79267443 TTTATTGTTA
1 TTTATT-TTA
*
79267453 TTAATTTTA
1 TTTATTTTA
79267462 AAAATTTGAA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
8 7 0.22
9 17 0.53
10 8 0.25
ACGTcount: A:0.22, C:0.00, G:0.04, T:0.73
Consensus pattern (9 bp):
TTTATTTTA
Found at i:79267520 original size:23 final size:23
Alignment explanation
Indices: 79267488--79267549 Score: 85
Period size: 21 Copynumber: 2.8 Consensus size: 23
79267478 ATTTGAAATT
79267488 TTTTATAATATATATTTTTTAAAA
1 TTTTA-AATATATATTTTTTAAAA
79267512 TTTTAAATAT-TATTTTTTAAAA
1 TTTTAAATATATATTTTTTAAAA
*
79267534 -ATTAAATATAT-TTTTT
1 TTTTAAATATATATTTTT
79267550 AATAATATGA
Statistics
Matches: 36, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
21 13 0.36
22 13 0.36
23 5 0.14
24 5 0.14
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (23 bp):
TTTTAAATATATATTTTTTAAAA
Found at i:79267527 original size:21 final size:22
Alignment explanation
Indices: 79267488--79267551 Score: 87
Period size: 22 Copynumber: 2.9 Consensus size: 22
79267478 ATTTGAAATT
79267488 TTTTATAATATATATTTTTTAAAA
1 TTTTA-AATAT-TATTTTTTAAAA
79267512 TTTTAAATATTATTTTTTAAAA
1 TTTTAAATATTATTTTTTAAAA
*
79267534 -ATTAAATA-TATTTTTTAA
1 TTTTAAATATTATTTTTTAA
79267552 TAATATGAAA
Statistics
Matches: 39, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
20 10 0.26
21 7 0.18
22 12 0.31
23 5 0.13
24 5 0.13
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (22 bp):
TTTTAAATATTATTTTTTAAAA
Found at i:79267662 original size:13 final size:13
Alignment explanation
Indices: 79267644--79267681 Score: 60
Period size: 13 Copynumber: 3.0 Consensus size: 13
79267634 TAAACATTTG
79267644 AAATTTTTAAATA
1 AAATTTTTAAATA
79267657 AAATTTTT-AATA
1 AAATTTTTAAATA
*
79267669 AAAATTTTAAATA
1 AAATTTTTAAATA
79267682 TCTTTAAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
12 11 0.48
13 12 0.52
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (13 bp):
AAATTTTTAAATA
Found at i:79267668 original size:12 final size:12
Alignment explanation
Indices: 79267644--79267678 Score: 52
Period size: 12 Copynumber: 2.8 Consensus size: 12
79267634 TAAACATTTG
79267644 AAATTTTTAAATA
1 AAATTTTT-AATA
79267657 AAATTTTTAATA
1 AAATTTTTAATA
*
79267669 AAAATTTTAA
1 AAATTTTTAA
79267679 ATATCTTTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
12 13 0.62
13 8 0.38
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (12 bp):
AAATTTTTAATA
Found at i:79267785 original size:13 final size:13
Alignment explanation
Indices: 79267757--79267790 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
79267747 AAACCTTTTT
79267757 AAAATTTT-TATA
1 AAAATTTTATATA
*
79267769 AAAATTTTATTTA
1 AAAATTTTATATA
79267782 AAAATTTTA
1 AAAATTTTA
79267791 ATGTTTAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
12 8 0.40
13 12 0.60
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (13 bp):
AAAATTTTATATA
Found at i:79267820 original size:29 final size:27
Alignment explanation
Indices: 79267770--79267828 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 27
79267760 ATTTTTATAA
* * *
79267770 AAATTTTATTTAAAAATTTTAATGTTT
1 AAATATTATTAAAAAATTTTAATATTT
79267797 AAATATTATTAAAAATATATTTAATATTT
1 AAATATTATTAAAAA-AT-TTTAATATTT
79267826 AAA
1 AAA
79267829 AAATAATATT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
27 13 0.48
28 2 0.07
29 12 0.44
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (27 bp):
AAATATTATTAAAAAATTTTAATATTT
Found at i:79267823 original size:21 final size:21
Alignment explanation
Indices: 79267798--79267856 Score: 75
Period size: 21 Copynumber: 2.8 Consensus size: 21
79267788 TTAATGTTTA
*
79267798 AATATTATTAAAAATATATTT
1 AATATTATAAAAAATATATTT
79267819 AATATT-TAAAAAATAATATTT
1 AATATTATAAAAAAT-ATATTT
*
79267840 AAAATTTATAAAAAATA
1 AATA-TTATAAAAAATA
79267857 GTTTCAAAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
20 7 0.21
21 15 0.45
22 3 0.09
23 8 0.24
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (21 bp):
AATATTATAAAAAATATATTT
Found at i:79267892 original size:36 final size:35
Alignment explanation
Indices: 79267822--79267960 Score: 176
Period size: 36 Copynumber: 4.0 Consensus size: 35
79267812 TATATTTAAT
*
79267822 ATTTAAAAAATAATATTTAAAATTTATAAAAAATA
1 ATTTCAAAAATAATATTTAAAATTTATAAAAAATA
* * *
79267857 GTTTCAAAAATATATTTTTAAAATTTATAAGAAATA
1 ATTTCAAAAATA-ATATTTAAAATTTATAAAAAATA
*
79267893 ATTTCAAAAATATATATTGAAAATTTA-AAAAAATA
1 ATTTCAAAAATA-ATATTTAAAATTTATAAAAAATA
* *
79267928 ATTT-TAAAATAATATTTAAAATTT-TGAAAAATA
1 ATTTCAAAAATAATATTTAAAATTTATAAAAAATA
79267961 TATATTATAA
Statistics
Matches: 91, Mismatches: 11, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
33 19 0.21
34 6 0.07
35 21 0.23
36 45 0.49
ACGTcount: A:0.57, C:0.01, G:0.03, T:0.39
Consensus pattern (35 bp):
ATTTCAAAAATAATATTTAAAATTTATAAAAAATA
Found at i:79267948 original size:23 final size:25
Alignment explanation
Indices: 79267933--79267977 Score: 69
Period size: 22 Copynumber: 1.9 Consensus size: 25
79267923 AAATAATTTT
79267933 AAAATA-ATATT-TAAAAT-TTTGA
1 AAAATATATATTATAAAATATTTGA
79267955 AAAATATATATTATAAAATATTT
1 AAAATATATATTATAAAATATTT
79267978 CAAATATACA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
22 6 0.30
23 5 0.25
24 6 0.30
25 3 0.15
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (25 bp):
AAAATATATATTATAAAATATTTGA
Found at i:79268041 original size:18 final size:17
Alignment explanation
Indices: 79268009--79268060 Score: 68
Period size: 17 Copynumber: 3.0 Consensus size: 17
79267999 TTTAAATTAG
79268009 TAATTAAATAAAATAAA
1 TAATTAAATAAAATAAA
*
79268026 TAATTAGATAAAAATAAA
1 TAATTAAAT-AAAATAAA
* *
79268044 TAAATAAACAAAATAAA
1 TAATTAAATAAAATAAA
79268061 ATAAGAAAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
17 16 0.53
18 14 0.47
ACGTcount: A:0.71, C:0.02, G:0.02, T:0.25
Consensus pattern (17 bp):
TAATTAAATAAAATAAA
Found at i:79268103 original size:19 final size:19
Alignment explanation
Indices: 79268076--79268138 Score: 58
Period size: 19 Copynumber: 3.3 Consensus size: 19
79268066 AAAAAAATAT
*
79268076 AAAACTTAAAAGAAAGAAA
1 AAAAATTAAAAGAAAGAAA
79268095 AAAAATT-AAAGAAA-AAGA
1 AAAAATTAAAAGAAAGAA-A
* *
79268113 CAAAAGTTAAAAAAAAGTAAA
1 -AAAAATTAAAAGAAAG-AAA
79268134 AAAAA
1 AAAAA
79268139 ATTCAGAAGC
Statistics
Matches: 35, Mismatches: 4, Indels: 9
0.73 0.08 0.19
Matches are distributed among these distances:
17 2 0.06
18 8 0.23
19 12 0.34
20 10 0.29
21 1 0.03
22 2 0.06
ACGTcount: A:0.76, C:0.03, G:0.10, T:0.11
Consensus pattern (19 bp):
AAAAATTAAAAGAAAGAAA
Found at i:79273967 original size:3 final size:3
Alignment explanation
Indices: 79273959--79274021 Score: 63
Period size: 3 Copynumber: 21.0 Consensus size: 3
79273949 CATGTTCAGG
* * * * * *
79273959 TAA TAA TAA TAA TAA TAA TAA TAA CAA CAA CAA CAA TAA CAA TAA CAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
*
79274007 TAA CAA TAA TAA TAA
1 TAA TAA TAA TAA TAA
79274022 CCACCACCAT
Statistics
Matches: 52, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
3 52 1.00
ACGTcount: A:0.67, C:0.11, G:0.00, T:0.22
Consensus pattern (3 bp):
TAA
Found at i:79273976 original size:12 final size:12
Alignment explanation
Indices: 79273963--79274022 Score: 75
Period size: 12 Copynumber: 5.0 Consensus size: 12
79273953 TTCAGGTAAT
*
79273963 AATAATAATAAT
1 AATAATAATAAC
*
79273975 AATAATAACAAC
1 AATAATAATAAC
* *
79273987 AACAACAATAAC
1 AATAATAATAAC
*
79273999 AATAACAATAAC
1 AATAATAATAAC
79274011 AATAATAATAAC
1 AATAATAATAAC
79274023 CACCACCATG
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 41 1.00
ACGTcount: A:0.67, C:0.13, G:0.00, T:0.20
Consensus pattern (12 bp):
AATAATAATAAC
Found at i:79278702 original size:14 final size:15
Alignment explanation
Indices: 79278679--79278708 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
79278669 TTTTAAACTG
79278679 TTTTACATATTTTTT
1 TTTTACATATTTTTT
79278694 TTTTA-ATATTTTTT
1 TTTTACATATTTTTT
79278708 T
1 T
79278709 ACGTCATTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 10 0.67
15 5 0.33
ACGTcount: A:0.20, C:0.03, G:0.00, T:0.77
Consensus pattern (15 bp):
TTTTACATATTTTTT
Found at i:79278708 original size:26 final size:25
Alignment explanation
Indices: 79278669--79278760 Score: 87
Period size: 27 Copynumber: 3.5 Consensus size: 25
79278659 ATATTAGTCA
* * *
79278669 TTTTAAACTGTTTTACATATTTTTT
1 TTTTAAATTTTTTTACATATTTATT
*
79278694 TTTTAATATTTTTTTACGTCATTTATT
1 TTTTAA-ATTTTTTTACAT-ATTTATT
*
79278721 TTTTAAACTTTTTTTATATA-TTATCT
1 TTTTAAA-TTTTTTTACATATTTAT-T
79278747 ATTTTAAATTTTTT
1 -TTTTAAATTTTTT
79278761 ATATGTTATT
Statistics
Matches: 56, Mismatches: 6, Indels: 9
0.79 0.08 0.13
Matches are distributed among these distances:
25 10 0.18
26 18 0.32
27 28 0.50
ACGTcount: A:0.25, C:0.07, G:0.02, T:0.66
Consensus pattern (25 bp):
TTTTAAATTTTTTTACATATTTATT
Found at i:79278744 original size:25 final size:23
Alignment explanation
Indices: 79278716--79278771 Score: 67
Period size: 25 Copynumber: 2.3 Consensus size: 23
79278706 TTTACGTCAT
79278716 TTATTTTTTAAACTTTTTTTATATA
1 TTATTTTTTAAA--TTTTTTATATA
*
79278741 TTATCTATTTTAAATTTTTTATATG
1 TTAT-T-TTTTAAATTTTTTATATA
79278766 TTATTT
1 TTATTT
79278772 AGTTATACGG
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
23 1 0.04
24 1 0.04
25 18 0.64
26 1 0.04
27 7 0.25
ACGTcount: A:0.27, C:0.04, G:0.02, T:0.68
Consensus pattern (23 bp):
TTATTTTTTAAATTTTTTATATA
Found at i:79284455 original size:15 final size:15
Alignment explanation
Indices: 79284420--79284471 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
79284410 TTAAGAATTT
*
79284420 TATTAAATTAT-ATA
1 TATTTAATTATAATA
79284434 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
79284448 TATTTAATAATAAT-
1 TATTTAATTATAATA
79284462 TATGTTAATT
1 TAT-TTAATT
79284472 TATATTTTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 8 0.25
14 8 0.25
15 16 0.50
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:79284499 original size:120 final size:120
Alignment explanation
Indices: 79284358--79284587 Score: 460
Period size: 120 Copynumber: 1.9 Consensus size: 120
79284348 TTTGAGTAAA
79284358 TTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTAT
1 TTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTAT
79284423 TAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATT
66 TAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATT
79284478 TTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTAT
1 TTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTAT
79284543 TAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTT
66 TAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTT
79284588 TAAATATGAT
Statistics
Matches: 110, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
120 110 1.00
ACGTcount: A:0.42, C:0.02, G:0.07, T:0.50
Consensus pattern (120 bp):
TTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTAT
TAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATT
Found at i:79284553 original size:61 final size:61
Alignment explanation
Indices: 79284368--79284555 Score: 208
Period size: 61 Copynumber: 3.1 Consensus size: 61
79284358 TTATAGTATC
79284368 ATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATT
1 ATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATT
* * * * * * * * * *
79284429 ATATATTTTAATTAT-AATATATTTA-ATAATAAT-TATG-TTAATTTA-TATTTTA-TAGTATC
1 ATATATTATGATT-TGAGTAAATTCATATAAGAATAT-TGATT-ATTAAGAATTTTATTA-AATT
79284488 ATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATT
1 ATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATT
79284549 ATATATT
1 ATATATT
79284556 TTAATTATAA
Statistics
Matches: 97, Mismatches: 20, Indels: 20
0.71 0.15 0.15
Matches are distributed among these distances:
58 3 0.03
59 29 0.30
60 26 0.27
61 36 0.37
62 3 0.03
ACGTcount: A:0.42, C:0.02, G:0.07, T:0.49
Consensus pattern (61 bp):
ATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATT
Found at i:79284570 original size:16 final size:16
Alignment explanation
Indices: 79284549--79284590 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
79284539 TTATTAAATT
*
79284549 ATATATTTTAATTATA
1 ATATATTTTAATAATA
79284565 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
79284580 AT-TATGTTTAA
1 ATATAT-TTTAA
79284591 ATATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:79284575 original size:15 final size:15
Alignment explanation
Indices: 79284540--79284581 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
79284530 TTAAGAATTT
*
79284540 TATTAAATTAT-ATA
1 TATTTAATTATAATA
79284554 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
79284568 TATTTAATAATAAT
1 TATTTAATTATAAT
79284582 TATGTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:79284816 original size:45 final size:43
Alignment explanation
Indices: 79284716--79284825 Score: 122
Period size: 45 Copynumber: 2.6 Consensus size: 43
79284706 TTTTCCATTA
79284716 TGCTATTACACCTCTATT-C---CATTCAACCAAACACAAGAT
1 TGCTATTACACCTCTATTCCATACATTCAACCAAACACAAGAT
* * *
79284755 TACTATTACGCCTCTATTCCATTACATTCAACCAAACA-ATTGATT
1 TGCTATTACACCTCTATTCCA-TACATTCAACCAAACACA-AGA-T
79284800 TGCTATTACACCTCTATTCCAATACA
1 TGCTATTACACCTCTATTCC-ATACA
79284826 CCTCTAATCC
Statistics
Matches: 58, Mismatches: 5, Indels: 10
0.79 0.07 0.14
Matches are distributed among these distances:
39 16 0.28
40 1 0.02
43 1 0.02
44 16 0.28
45 23 0.40
46 1 0.02
ACGTcount: A:0.34, C:0.29, G:0.05, T:0.33
Consensus pattern (43 bp):
TGCTATTACACCTCTATTCCATACATTCAACCAAACACAAGAT
Found at i:79284827 original size:16 final size:16
Alignment explanation
Indices: 79284806--79284841 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
79284796 GATTTGCTAT
*
79284806 TACACCTCTATTCCAA
1 TACACCTCTAATCCAA
79284822 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
79284838 TACA
1 TACA
79284842 GCGAACCAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.36, C:0.36, G:0.00, T:0.28
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:79285512 original size:19 final size:20
Alignment explanation
Indices: 79285478--79285521 Score: 65
Period size: 20 Copynumber: 2.2 Consensus size: 20
79285468 GATTGTAAAG
79285478 AAAAATTATCTAACCA-TTA
1 AAAAATTATCTAACCAGTTA
79285497 AAAATATTATCT-ACCAGTTA
1 AAAA-ATTATCTAACCAGTTA
79285517 AAAAA
1 AAAAA
79285522 GGTGCACTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.39
20 14 0.61
ACGTcount: A:0.55, C:0.14, G:0.02, T:0.30
Consensus pattern (20 bp):
AAAAATTATCTAACCAGTTA
Found at i:79298118 original size:24 final size:24
Alignment explanation
Indices: 79298059--79298118 Score: 63
Period size: 23 Copynumber: 2.5 Consensus size: 24
79298049 GAAATTTATA
79298059 TTTGAAATGT-TTTATAATATATTT
1 TTTGAAAT-TATTTATAATATATTT
* *
79298083 TTTTAAA-AATTTA-AATATATATT
1 TTTGAAATTATTTATAATATAT-TT
79298106 TTTGAAATTATTT
1 TTTGAAATTATTT
79298119 TTTAAAATTT
Statistics
Matches: 29, Mismatches: 4, Indels: 6
0.74 0.10 0.15
Matches are distributed among these distances:
22 7 0.24
23 12 0.41
24 10 0.34
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.57
Consensus pattern (24 bp):
TTTGAAATTATTTATAATATATTT
Found at i:79298143 original size:35 final size:35
Alignment explanation
Indices: 79298081--79298149 Score: 97
Period size: 35 Copynumber: 2.0 Consensus size: 35
79298071 TATAATATAT
*
79298081 TTTTTTAAAAATTTAAATATATATTTTTGAAATTA
1 TTTTTTAAAAATTTAAATATATATTTTTAAAATTA
79298116 TTTTTT-AAAATTTAAA-ATATTATTTTTTAAAATT
1 TTTTTTAAAAATTTAAATATA-TA-TTTTTAAAATT
79298150 TAAAATATTT
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
33 3 0.10
34 12 0.39
35 16 0.52
ACGTcount: A:0.42, C:0.00, G:0.01, T:0.57
Consensus pattern (35 bp):
TTTTTTAAAAATTTAAATATATATTTTTAAAATTA
Found at i:79298162 original size:21 final size:22
Alignment explanation
Indices: 79298112--79298165 Score: 101
Period size: 22 Copynumber: 2.5 Consensus size: 22
79298102 TATTTTTGAA
79298112 ATTATTTTTTAAAATTTAAAAT
1 ATTATTTTTTAAAATTTAAAAT
79298134 ATTATTTTTTAAAATTTAAAAT
1 ATTATTTTTTAAAATTTAAAAT
79298156 ATT-TTTTTTA
1 ATTATTTTTTA
79298166 TTTTTCTAAT
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
21 7 0.22
22 25 0.78
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (22 bp):
ATTATTTTTTAAAATTTAAAAT
Found at i:79298279 original size:14 final size:15
Alignment explanation
Indices: 79298260--79298292 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
79298250 ATCTTTAAAA
79298260 ATAATTT-AAATATT
1 ATAATTTAAAATATT
79298274 ATAATTTAAAATATT
1 ATAATTTAAAATATT
79298289 ATAA
1 ATAA
79298293 AACTAATAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 7 0.39
15 11 0.61
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (15 bp):
ATAATTTAAAATATT
Found at i:79298385 original size:21 final size:20
Alignment explanation
Indices: 79298334--79298397 Score: 65
Period size: 22 Copynumber: 3.0 Consensus size: 20
79298324 TAAAATATTT
*
79298334 AAATGTTTTATATTATTAAAAA
1 AAATG-TTTA-ATTTTTAAAAA
* *
79298356 ATATATTTAATTTTTAAAAA
1 AAATGTTTAATTTTTAAAAA
79298376 AGAATGTTTAAATTTTTAAAAA
1 A-AATGTTT-AATTTTTAAAAA
79298398 TAATTTCAAA
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
20 11 0.31
21 9 0.26
22 15 0.43
ACGTcount: A:0.50, C:0.00, G:0.05, T:0.45
Consensus pattern (20 bp):
AAATGTTTAATTTTTAAAAA
Found at i:79298423 original size:21 final size:21
Alignment explanation
Indices: 79298399--79298470 Score: 65
Period size: 23 Copynumber: 3.2 Consensus size: 21
79298389 TTTTAAAAAT
79298399 AATTTCAAAATATATATTTAA
1 AATTTCAAAATATATATTTAA
*
79298420 AATTTAAAAAAATATATATTATAAA
1 AATTT--CAAAATATATATT-T-AA
* *
79298445 ACATTTC-AAATATACATTTCA
1 A-ATTTCAAAATATATATTTAA
79298466 AATTT
1 AATTT
79298471 TTTAATATTA
Statistics
Matches: 42, Mismatches: 4, Indels: 11
0.74 0.07 0.19
Matches are distributed among these distances:
20 4 0.10
21 7 0.17
22 1 0.02
23 22 0.52
24 1 0.02
25 3 0.07
26 4 0.10
ACGTcount: A:0.53, C:0.07, G:0.00, T:0.40
Consensus pattern (21 bp):
AATTTCAAAATATATATTTAA
Found at i:79300011 original size:25 final size:25
Alignment explanation
Indices: 79299982--79300047 Score: 80
Period size: 25 Copynumber: 2.6 Consensus size: 25
79299972 ATTTAAATAA
79299982 ATTTTTATTATCTTTTAAT-ATTTTT
1 ATTTTTATTAT-TTTTAATAATTTTT
*
79300007 ATTTTTATAAATTTTTAATAATTTTT
1 ATTTTTAT-TATTTTTAATAATTTTT
* *
79300033 AATTTAATTATTTTT
1 ATTTTTATTATTTTT
79300048 CCTTTTGGAA
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
25 21 0.60
26 14 0.40
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.68
Consensus pattern (25 bp):
ATTTTTATTATTTTTAATAATTTTT
Found at i:79300044 original size:35 final size:35
Alignment explanation
Indices: 79299978--79300047 Score: 90
Period size: 35 Copynumber: 2.0 Consensus size: 35
79299968 ATCGATTTAA
* *
79299978 ATAAATTTTTATTATCTTTTAATATTTTTATTTTT
1 ATAAATTTTTATAATCTTTTAATATTATTATTTTT
79300013 ATAAATTTTTAATAAT-TTTTAAT-TTAATTATTTTT
1 ATAAATTTTT-ATAATCTTTTAATATT-ATTATTTTT
79300048 CCTTTTGGAA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
34 2 0.06
35 25 0.81
36 4 0.13
ACGTcount: A:0.33, C:0.01, G:0.00, T:0.66
Consensus pattern (35 bp):
ATAAATTTTTATAATCTTTTAATATTATTATTTTT
Found at i:79303857 original size:24 final size:24
Alignment explanation
Indices: 79303841--79303889 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
79303831 GGTACATTGA
*
79303841 GAAAGTTTTTTGCGGGTTCAATAT
1 GAAAGTTTTTTGCGGGTACAATAT
* *
79303865 GAAAGTTTTTTGCAGGTTCAATAT
1 GAAAGTTTTTTGCGGGTACAATAT
79303889 G
1 G
79303890 CAGAGTGCTA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.27, C:0.08, G:0.24, T:0.41
Consensus pattern (24 bp):
GAAAGTTTTTTGCGGGTACAATAT
Found at i:79316286 original size:45 final size:45
Alignment explanation
Indices: 79316232--79316323 Score: 184
Period size: 45 Copynumber: 2.0 Consensus size: 45
79316222 AAAGAGTATG
79316232 TGTACAATGGGGAAGCATTAAAATGTTACTTCAGCTTAATTTGGA
1 TGTACAATGGGGAAGCATTAAAATGTTACTTCAGCTTAATTTGGA
79316277 TGTACAATGGGGAAGCATTAAAATGTTACTTCAGCTTAATTTGGA
1 TGTACAATGGGGAAGCATTAAAATGTTACTTCAGCTTAATTTGGA
79316322 TG
1 TG
79316324 ATTTTAAAAA
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 47 1.00
ACGTcount: A:0.33, C:0.11, G:0.23, T:0.34
Consensus pattern (45 bp):
TGTACAATGGGGAAGCATTAAAATGTTACTTCAGCTTAATTTGGA
Found at i:79319192 original size:33 final size:33
Alignment explanation
Indices: 79319155--79319221 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
79319145 AATTACTCAA
79319155 TAATATTCAATAATTCAATATAAATAAGTTAAG
1 TAATATTCAATAATTCAATATAAATAAGTTAAG
79319188 TAATATTCAATAATTCAATATAAATAAGTTAAG
1 TAATATTCAATAATTCAATATAAATAAGTTAAG
79319221 T
1 T
79319222 CTATGTTAAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.51, C:0.06, G:0.06, T:0.37
Consensus pattern (33 bp):
TAATATTCAATAATTCAATATAAATAAGTTAAG
Found at i:79323438 original size:5 final size:5
Alignment explanation
Indices: 79323428--79323453 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
79323418 ATTGAAACCT
79323428 TAAAA TAAAA TAAAA TAAAA TAAAA T
1 TAAAA TAAAA TAAAA TAAAA TAAAA T
79323454 TTTAAATTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (5 bp):
TAAAA
Found at i:79324568 original size:37 final size:37
Alignment explanation
Indices: 79324509--79324617 Score: 200
Period size: 37 Copynumber: 2.9 Consensus size: 37
79324499 AGCTCAGATG
* *
79324509 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
79324546 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
79324583 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
79324618 ATATATTTCC
Statistics
Matches: 70, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 70 1.00
ACGTcount: A:0.28, C:0.31, G:0.19, T:0.22
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:79324819 original size:48 final size:48
Alignment explanation
Indices: 79324764--79325267 Score: 686
Period size: 48 Copynumber: 10.1 Consensus size: 48
79324754 ACACATCGCC
*
79324764 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
79324812 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
* *
79324862 TATATATTTCACATT-GACCATTCGGCTTTACCACATATGCATATCTCA
1 TACATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCA
* *
79324910 TACATATTTCACATTGGCCATTTGGCTTTACCACATATACATATCTCATATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC------A
* * * * *
79324964 TATATATTTCACATTAACCATCCAGCTTTACCACATACACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
* *
79325014 TATATATTTCGCATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
79325062 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
79325110 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATA--TC-T-C--A
79325164 TTTCACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 --T-ACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
* *
79325215 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTTA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
79325263 TACAT
1 TACAT
79325268 CAATTTCAGC
Statistics
Matches: 415, Mismatches: 22, Indels: 38
0.87 0.05 0.08
Matches are distributed among these distances:
48 230 0.55
49 3 0.01
50 90 0.22
51 2 0.00
52 1 0.00
53 1 0.00
54 43 0.10
55 2 0.00
56 1 0.00
57 42 0.10
ACGTcount: A:0.32, C:0.26, G:0.06, T:0.36
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:79324917 original size:98 final size:98
Alignment explanation
Indices: 79324767--79325260 Score: 724
Period size: 98 Copynumber: 4.9 Consensus size: 98
79324757 CATCGCCTAC
* *
79324767 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCA
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCA
79324832 TTCGGCTTTACCACATATACATATCTCATATAT
66 TTCGGCTTTACCACATATACATATCTCATATAT
* *
79324865 ATATTTCACATT-GACCATTCGGCTTTACCACATATGCATATCTCATACATATTTCACATTGGCC
1 ATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCC
*
79324929 ATTTGGCTTTACCACATATACATATCTCATATATATAT
65 ATTCGGCTTTACCACATATACATATCTC----ATATAT
* * * * * *
79324967 ATATTTCACATTAACCATCCAGCTTTACCACATACACATATCTCATATATATATTTCGCATTAGC
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--ATACATATTTCACATTAGC
*
79325032 CATTCGGCTTTACCACATATACATATCTC--ATAC
64 CATTCGGCTTTACCACATATACATATCTCATATAT
79325065 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCA
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCA
79325130 TTCGGCTTTACCACATATACATATCTCATACATATTT
66 TTCGGCTTTACCACATATACATATCTCAT--ATA--T
*
79325167 CACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAG
1 ---ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
79325232 CCATTCGGCTTTACCACATATACATATCT
63 CCATTCGGCTTTACCACATATACATATCT
79325261 TATACATCAA
Statistics
Matches: 356, Mismatches: 23, Indels: 27
0.88 0.06 0.07
Matches are distributed among these distances:
96 46 0.13
97 1 0.00
98 128 0.36
100 3 0.01
102 44 0.12
104 44 0.12
105 90 0.25
ACGTcount: A:0.31, C:0.27, G:0.06, T:0.36
Consensus pattern (98 bp):
ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCA
TTCGGCTTTACCACATATACATATCTCATATAT
Found at i:79325035 original size:152 final size:146
Alignment explanation
Indices: 79324764--79325267 Score: 758
Period size: 152 Copynumber: 3.4 Consensus size: 146
79324754 ACACATCGCC
*
79324764 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAG
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
79324829 CCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATT-GACCATTCGGCTTTAC
66 CCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATTAG-CCATTCGGCTTTAC
*
79324893 CACATATGCATATCTCA
130 CACATATACATATCTCA
* * * *
79324910 TACATATTTCACATTGGCCATTTGGCTTTACCACATATACATATCTCATATATATATATATTTCA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTC------ATACATATTTCA
* * * * *
79324975 CATTAACCATCCAGCTTTACCACATACACATATCTCATATATATATTTCGCATTAGCCATTCGGC
60 CATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATTAGCCATTCGGC
79325040 TTTACCACATATACATATCTCA
125 TTTACCACATATACATATCTCA
*
79325062 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
79325127 CCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATATTTCACATTAGCCATTCGG
66 CCATTCGGCTTTACCACATATACATATCTCAT--ATA--T---ATATTTCACATTAGCCATTCGG
79325192 CTTTACCACATATACATATCTCA
124 CTTTACCACATATACATATCTCA
*
79325215 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTTATACAT
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACAT
79325268 CAATTTCAGC
Statistics
Matches: 323, Mismatches: 21, Indels: 21
0.88 0.06 0.06
Matches are distributed among these distances:
146 89 0.28
148 3 0.01
150 1 0.00
152 134 0.41
153 96 0.30
ACGTcount: A:0.32, C:0.26, G:0.06, T:0.36
Consensus pattern (146 bp):
TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
CCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATTAGCCATTCGGCTTTACC
ACATATACATATCTCA
Found at i:79325179 original size:57 final size:56
Alignment explanation
Indices: 79325110--79325267 Score: 242
Period size: 57 Copynumber: 2.9 Consensus size: 56
79325100 ACATATCTCA
79325110 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATT
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATT
79325166 TCACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATT
1 T-ACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATT
*
79325223 T-C--A---CAC--TAGCCATTCGGCTTTACCACATATACATATCTTATACAT
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACAT
79325268 CAATTTCAGC
Statistics
Matches: 100, Mismatches: 1, Indels: 10
0.90 0.01 0.09
Matches are distributed among these distances:
48 38 0.38
50 3 0.03
53 1 0.01
55 1 0.01
56 1 0.01
57 56 0.56
ACGTcount: A:0.32, C:0.27, G:0.06, T:0.36
Consensus pattern (56 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATT
Found at i:79325192 original size:105 final size:105
Alignment explanation
Indices: 79325063--79325267 Score: 392
Period size: 105 Copynumber: 2.0 Consensus size: 105
79325053 CATATCTCAT
*
79325063 ACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGC
1 ACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGC
79325128 CATTCGGCTTTACCACATATACATATCTCATACATATTTC
66 CATTCGGCTTTACCACATATACATATCTCATACATATTTC
79325168 ACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGC
1 ACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGC
*
79325233 CATTCGGCTTTACCACATATACATATCTTATACAT
66 CATTCGGCTTTACCACATATACATATCTCATACAT
79325268 CAATTTCAGC
Statistics
Matches: 98, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
105 98 1.00
ACGTcount: A:0.32, C:0.27, G:0.06, T:0.36
Consensus pattern (105 bp):
ACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGC
CATTCGGCTTTACCACATATACATATCTCATACATATTTC
Found at i:79332741 original size:34 final size:35
Alignment explanation
Indices: 79332627--79332755 Score: 129
Period size: 35 Copynumber: 3.7 Consensus size: 35
79332617 TCCTCATTGA
* * *
79332627 AATACCATACCTACATTTTACAACTC-GATATGGGA-
1 AATACCATACCTACGTTTCACAACTCAG-TAT-AGAT
* **
79332662 AATGCCATACCTACGTTTCTTAACTCAGTATAGAT
1 AATACCATACCTACGTTTCACAACTCAGTATAGAT
*
79332697 AATACCATACCTACGTTTCACAACTCAGT-TGGAT
1 AATACCATACCTACGTTTCACAACTCAGTATAGAT
* * *
79332731 GATACCATACCGAAGTTTCACAACT
1 AATACCATACCTACGTTTCACAACT
79332756 TTGTCATGGA
Statistics
Matches: 79, Mismatches: 13, Indels: 5
0.81 0.13 0.05
Matches are distributed among these distances:
34 28 0.35
35 50 0.63
36 1 0.01
ACGTcount: A:0.34, C:0.25, G:0.12, T:0.29
Consensus pattern (35 bp):
AATACCATACCTACGTTTCACAACTCAGTATAGAT
Found at i:79340831 original size:14 final size:14
Alignment explanation
Indices: 79340812--79340861 Score: 100
Period size: 14 Copynumber: 3.6 Consensus size: 14
79340802 GTGCCTCCAA
79340812 TCATCATTCTGATT
1 TCATCATTCTGATT
79340826 TCATCATTCTGATT
1 TCATCATTCTGATT
79340840 TCATCATTCTGATT
1 TCATCATTCTGATT
79340854 TCATCATT
1 TCATCATT
79340862 AAGCCCTTCT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 36 1.00
ACGTcount: A:0.22, C:0.22, G:0.06, T:0.50
Consensus pattern (14 bp):
TCATCATTCTGATT
Found at i:79342942 original size:34 final size:35
Alignment explanation
Indices: 79342833--79342961 Score: 136
Period size: 35 Copynumber: 3.7 Consensus size: 35
79342823 TCTTCATTGA
* * * *
79342833 AATATCATACCTACATTTTACAACTCGGTATGGGA-
1 AATACCATACCTACGTTTCACAACTCAGTAT-GGAT
** *
79342868 AATACCATACCTACGTTTCTTAACTTAGTATGGAT
1 AATACCATACCTACGTTTCACAACTCAGTATGGAT
*
79342903 AATACCATACCTACGCTTCACAACTCAGT-TGGAT
1 AATACCATACCTACGTTTCACAACTCAGTATGGAT
* * *
79342937 GATACCATACCGAAGTTTCACAACT
1 AATACCATACCTACGTTTCACAACT
79342962 TTTTCATGGA
Statistics
Matches: 78, Mismatches: 15, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
34 29 0.37
35 49 0.63
ACGTcount: A:0.33, C:0.24, G:0.12, T:0.30
Consensus pattern (35 bp):
AATACCATACCTACGTTTCACAACTCAGTATGGAT
Found at i:79344530 original size:13 final size:14
Alignment explanation
Indices: 79344512--79344540 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
79344502 GAGAGCTATC
79344512 AGCAAAGG-AGCAA
1 AGCAAAGGAAGCAA
79344525 AGCAAAGGAAGCAA
1 AGCAAAGGAAGCAA
79344539 AG
1 AG
79344541 GAGCCTCGTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.55, C:0.14, G:0.31, T:0.00
Consensus pattern (14 bp):
AGCAAAGGAAGCAA
Found at i:79344691 original size:28 final size:28
Alignment explanation
Indices: 79344659--79344713 Score: 101
Period size: 28 Copynumber: 2.0 Consensus size: 28
79344649 TATAAAAATG
*
79344659 TTAGCTTAATTTTATTTAAGCTAGAATT
1 TTAGCTTAATGTTATTTAAGCTAGAATT
79344687 TTAGCTTAATGTTATTTAAGCTAGAAT
1 TTAGCTTAATGTTATTTAAGCTAGAAT
79344714 GATTGCTTTG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.33, C:0.07, G:0.13, T:0.47
Consensus pattern (28 bp):
TTAGCTTAATGTTATTTAAGCTAGAATT
Found at i:79344721 original size:28 final size:28
Alignment explanation
Indices: 79344659--79344721 Score: 92
Period size: 28 Copynumber: 2.2 Consensus size: 28
79344649 TATAAAAATG
* *
79344659 TTAGCTTAATTTTATTTAAGCTAGAATT
1 TTAGCTTAATGTTATTTAAGCTAGAATA
79344687 TTAGCTTAATGTTATTTAAGCTAGAATGA
1 TTAGCTTAATGTTATTTAAGCTAGAAT-A
79344716 TT-GCTT
1 TTAGCTT
79344722 TGATTAAATA
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
28 30 0.94
29 2 0.06
ACGTcount: A:0.30, C:0.08, G:0.14, T:0.48
Consensus pattern (28 bp):
TTAGCTTAATGTTATTTAAGCTAGAATA
Found at i:79348203 original size:13 final size:13
Alignment explanation
Indices: 79348187--79348212 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
79348177 GATTAATAAT
79348187 AATAGGTTAAGTC
1 AATAGGTTAAGTC
79348200 AATAGGTTAAGTC
1 AATAGGTTAAGTC
79348213 TAGGTGGCTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.08, G:0.23, T:0.31
Consensus pattern (13 bp):
AATAGGTTAAGTC
Found at i:79350531 original size:13 final size:13
Alignment explanation
Indices: 79350513--79350538 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
79350503 AATAAAGAGG
79350513 AAAATAAAAAATA
1 AAAATAAAAAATA
79350526 AAAATAAAAAATA
1 AAAATAAAAAATA
79350539 CACCTTTTTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (13 bp):
AAAATAAAAAATA
Found at i:79351608 original size:19 final size:19
Alignment explanation
Indices: 79351566--79351615 Score: 57
Period size: 19 Copynumber: 2.6 Consensus size: 19
79351556 TTTTACCATG
* *
79351566 TATATACAT-TTTTATATC
1 TATATATATATTTTATATA
79351584 TCATATATATATTTTATATA
1 T-ATATATATATTTTATATA
*
79351604 TATATGTATATT
1 TATATATATATT
79351616 ATGTATATTT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
18 1 0.04
19 17 0.63
20 9 0.33
ACGTcount: A:0.36, C:0.06, G:0.02, T:0.56
Consensus pattern (19 bp):
TATATATATATTTTATATA
Found at i:79355604 original size:9 final size:9
Alignment explanation
Indices: 79355590--79355621 Score: 57
Period size: 9 Copynumber: 3.7 Consensus size: 9
79355580 CAACGCTTTT
79355590 TTGCATTCA
1 TTGCATTCA
79355599 TTGCATTCA
1 TTGCATTCA
79355608 TTGCATTCA
1 TTGCATTCA
79355617 -TGCAT
1 TTGCAT
79355622 CGGCATTGCA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 5 0.22
9 18 0.78
ACGTcount: A:0.22, C:0.22, G:0.12, T:0.44
Consensus pattern (9 bp):
TTGCATTCA
Found at i:79363982 original size:44 final size:43
Alignment explanation
Indices: 79363912--79364036 Score: 142
Period size: 43 Copynumber: 2.9 Consensus size: 43
79363902 CTAAATGTAC
* * *
79363912 AGACCTTAAACCCCGAAGCAGTAGGGTAACAGGTTGAATTCAA
1 AGACCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAATTCAA
* * * * ***
79363955 AGGGCTTTAACCCCCTAAGCAGTAGGGTAACAAGCCGAATTTGC
1 A-GACCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAATTCAA
*
79363999 AGACCTTAACCCCCTAAGCAGTAGGGTAATAGGCTGAA
1 AGACCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAA
79364037 AATTATAGAT
Statistics
Matches: 66, Mismatches: 15, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
43 33 0.50
44 33 0.50
ACGTcount: A:0.34, C:0.23, G:0.24, T:0.19
Consensus pattern (43 bp):
AGACCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAATTCAA
Found at i:79364008 original size:43 final size:43
Alignment explanation
Indices: 79363910--79364027 Score: 137
Period size: 44 Copynumber: 2.7 Consensus size: 43
79363900 GACTAAATGT
* * * **
79363910 ACAGACCTTAAACCCCGAAGCAGTAGGGTAACAGGTTGAATTC
1 ACAGACCTTAACCCCCTAAGCAGTAGGGTAACAAGCCGAATTC
* * * *
79363953 AAAGGGCTTTAACCCCCTAAGCAGTAGGGTAACAAGCCGAATTT
1 ACA-GACCTTAACCCCCTAAGCAGTAGGGTAACAAGCCGAATTC
*
79363997 GCAGACCTTAACCCCCTAAGCAGTAGGGTAA
1 ACAGACCTTAACCCCCTAAGCAGTAGGGTAA
79364028 TAGGCTGAAA
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
43 28 0.46
44 33 0.54
ACGTcount: A:0.34, C:0.25, G:0.23, T:0.19
Consensus pattern (43 bp):
ACAGACCTTAACCCCCTAAGCAGTAGGGTAACAAGCCGAATTC
Found at i:79365816 original size:17 final size:17
Alignment explanation
Indices: 79365786--79365818 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
79365776 ACCATTCTTG
79365786 TATTATTATTTTTAGCA
1 TATTATTATTTTTAGCA
79365803 TATT-TTATTATTTAGC
1 TATTATTATT-TTTAGC
79365819 CCCTTTTAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.27, C:0.06, G:0.06, T:0.61
Consensus pattern (17 bp):
TATTATTATTTTTAGCA
Found at i:79369057 original size:2 final size:2
Alignment explanation
Indices: 79369050--79369086 Score: 56
Period size: 2 Copynumber: 18.5 Consensus size: 2
79369040 GTAAACACTA
* *
79369050 AT AT AT AT AT AT AT AT AT AT AT AT AA AT AT TT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
79369087 AATTTAATTA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Done.