Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 242 of 349
Found at i:80078867 original size:44 final size:44
Alignment explanation
Indices: 80078783--80078890 Score: 128
Period size: 44 Copynumber: 2.5 Consensus size: 44
80078773 TAACATGGCG
* * * * *
80078783 AATCTTATCTCTCTGAAGCTATAGTGGAGCAGATTGAAGCCACA
1 AATCTTATCTCCCTGAAGTTACAGTAGAGCAGATTAAAGCCACA
* *
80078827 AATCTTATCTCCCTGAAGTTACAGTAGAGTAGTTTAAAGCCACA
1 AATCTTATCTCCCTGAAGTTACAGTAGAGCAGATTAAAGCCACA
*
80078871 AATCCTATAC-CCCTGAAGTT
1 AATCTTAT-CTCCCTGAAGTT
80078891 GTAGTGGGAT
Statistics
Matches: 55, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
44 54 0.98
45 1 0.02
ACGTcount: A:0.32, C:0.22, G:0.17, T:0.29
Consensus pattern (44 bp):
AATCTTATCTCCCTGAAGTTACAGTAGAGCAGATTAAAGCCACA
Found at i:80079107 original size:44 final size:44
Alignment explanation
Indices: 80078920--80079164 Score: 129
Period size: 44 Copynumber: 5.5 Consensus size: 44
80078910 TCATACAAAT
* ** * * *
80078920 TACAAGTCTTATCTCCCTAAAGTTGCAGTGGAATAGGCTGAAA-A
1 TACAAGTCTTATCTCCCTAAAGTTGCAGTAGAGCA-GATCAAAGC
* * * * * * * *
80078964 TAGTAAATCTTATCTCTCTGAAGTTGTAGTAGAGTAGATTAAAGT
1 TA-CAAGTCTTATCTCCCTAAAGTTGCAGTAGAGCAGATCAAAGC
* * * * * * * * * ** *
80079009 TATAAGCCTAATCTCCTTGAAGTTACAGTGGGGCAGGTTGAAGT
1 TACAAGTCTTATCTCCCTAAAGTTGCAGTAGAGCAGATCAAAGC
* *
80079053 TAC-AGATCTTATATCCCTAAAGTTGCAGT-GAGTAGATCAAAGC
1 TACAAG-TCTTATCTCCCTAAAGTTGCAGTAGAGCAGATCAAAGC
* * * *
80079096 TAGCAAGTCTTATCTTCTTAAAGTTGTAGTAGAGCAGATTAAAGC
1 TA-CAAGTCTTATCTCCCTAAAGTTGCAGTAGAGCAGATCAAAGC
80079141 TACAAGTCCTT-TCTCCCTAAAGTT
1 TACAAGT-CTTATCTCCCTAAAGTT
80079165 ATAATGGAAT
Statistics
Matches: 151, Mismatches: 43, Indels: 14
0.73 0.21 0.07
Matches are distributed among these distances:
43 12 0.08
44 92 0.61
45 47 0.31
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (44 bp):
TACAAGTCTTATCTCCCTAAAGTTGCAGTAGAGCAGATCAAAGC
Found at i:80079164 original size:132 final size:133
Alignment explanation
Indices: 80078926--80079165 Score: 299
Period size: 132 Copynumber: 1.8 Consensus size: 133
80078916 AAATTACAAG
* * * * *
80078926 TCTTATCTCCCTAAAGTTGCAGTGGAATAGGCTGAAAATAGTAAATCTTATCTCTCTGAAGTTGT
1 TCTTATATCCCTAAAGTTGCAGTGGAATAGGATCAAAATAGCAAATCTTATCTCTCTAAAGTTGT
* * * * *
80078991 AGTAGAGTAGATTAAAGTTATAAGCCTAATCTCCTTGAAGTTACAGTGGGGCAGGTTGAAGTTAC
66 AGTAGAGCAGATTAAAGCTACAAGCCTAATCTCCCTAAAGTTACAGTGGGGCAGGTTGAAGTTAC
80079056 AGA
131 AGA
* * *
80079059 TCTTATATCCCTAAAGTTGCAGT-GAGTA-GATCAAAGCTAGCAAGTCTTATCT-TCTTAAAGTT
1 TCTTATATCCCTAAAGTTGCAGTGGAATAGGATCAAA-ATAGCAAATCTTATCTCTC-TAAAGTT
*
80079121 GTAGTAGAGCAGATTAAAGCTACAAGTCCT-TTCTCCCTAAAGTTA
64 GTAGTAGAGCAGATTAAAGCTACAAG-CCTAATCTCCCTAAAGTTA
80079166 TAATGGAATG
Statistics
Matches: 90, Mismatches: 14, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
131 7 0.08
132 58 0.64
133 25 0.28
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (133 bp):
TCTTATATCCCTAAAGTTGCAGTGGAATAGGATCAAAATAGCAAATCTTATCTCTCTAAAGTTGT
AGTAGAGCAGATTAAAGCTACAAGCCTAATCTCCCTAAAGTTACAGTGGGGCAGGTTGAAGTTAC
AGA
Found at i:80079694 original size:3 final size:3
Alignment explanation
Indices: 80079686--80079713 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
80079676 CGCAAAACAA
80079686 AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT A
80079714 TATTGTATCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:80080745 original size:24 final size:24
Alignment explanation
Indices: 80080712--80080788 Score: 109
Period size: 24 Copynumber: 3.2 Consensus size: 24
80080702 AAGGCTGTTA
* * *
80080712 GGAGAAGATTTGGGAACTGATAAG
1 GGAGAGGATTTAGGAGCTGATAAG
*
80080736 GGAGAGGATTTAAGAGCTGATAAG
1 GGAGAGGATTTAGGAGCTGATAAG
*
80080760 GGAGAGGATTTAGGAGCTGATTAG
1 GGAGAGGATTTAGGAGCTGATAAG
80080784 GGAGA
1 GGAGA
80080789 ACGGTGTTGG
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 47 1.00
ACGTcount: A:0.35, C:0.04, G:0.40, T:0.21
Consensus pattern (24 bp):
GGAGAGGATTTAGGAGCTGATAAG
Found at i:80082259 original size:27 final size:26
Alignment explanation
Indices: 80082219--80082330 Score: 143
Period size: 27 Copynumber: 4.2 Consensus size: 26
80082209 AGGAAACATC
*
80082219 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
*
80082246 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
80082273 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTG-AT
* * *
80082301 CTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGAT
80082327 CTGG
1 CTGG
80082331 CAGCCATGCT
Statistics
Matches: 76, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
26 7 0.09
27 52 0.68
28 17 0.22
ACGTcount: A:0.16, C:0.24, G:0.23, T:0.37
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:80082323 original size:54 final size:54
Alignment explanation
Indices: 80082219--80082330 Score: 172
Period size: 54 Copynumber: 2.1 Consensus size: 54
80082209 AGGAAACATC
*
80082219 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
* * *
80082273 CTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCTGTT
1 CTGGTGGCTATGCCACAATTATCTG-ATCTGGTGACTCTGCCACATATATCTGTT
80082327 CTGG
1 CTGG
80082331 CAGCCATGCT
Statistics
Matches: 53, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
54 35 0.66
55 18 0.34
ACGTcount: A:0.16, C:0.24, G:0.23, T:0.37
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
Found at i:80083892 original size:27 final size:27
Alignment explanation
Indices: 80083851--80083904 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
80083841 TGTCATGTGA
* *
80083851 AATTGAATGGCAAATTATTGTTACATG
1 AATTGAATGGCAAATTACTATTACATG
**
80083878 AATTGAATGTTAAATTACTATTACATG
1 AATTGAATGGCAAATTACTATTACATG
80083905 GGTTGTATGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.07, G:0.15, T:0.39
Consensus pattern (27 bp):
AATTGAATGGCAAATTACTATTACATG
Found at i:80084271 original size:49 final size:51
Alignment explanation
Indices: 80084153--80084288 Score: 195
Period size: 49 Copynumber: 2.7 Consensus size: 51
80084143 TATTGTGAGC
* *
80084153 GTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTTCGATCACGTGT
1 GTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAACTTCGATCACATGT
* * * * *
80084204 GTAGTACTAAGTGTAGGCTACTATGTGTACTAGATAA-TT-GGTCGCATGT
1 GTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAACTTCGATCACATGT
80084253 GTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 GTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
80084289 GCCTTGTCTA
Statistics
Matches: 75, Mismatches: 10, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
49 40 0.53
50 2 0.03
51 33 0.44
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.29
Consensus pattern (51 bp):
GTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAACTTCGATCACATGT
Found at i:80096277 original size:9 final size:9
Alignment explanation
Indices: 80096260--80096315 Score: 55
Period size: 9 Copynumber: 6.4 Consensus size: 9
80096250 TCTATTTCAA
*
80096260 AAAAAAAAG
1 AAAAGAAAG
80096269 AAAAGAAAG
1 AAAAGAAAG
80096278 AAAAGAAA-
1 AAAAGAAAG
*
80096286 AAGAGAAA-
1 AAAAGAAAG
*
80096294 AAAATAAAG
1 AAAAGAAAG
80096303 AGAAA-AAAG
1 A-AAAGAAAG
80096312 AAAA
1 AAAA
80096316 AATGGAGAGG
Statistics
Matches: 41, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
8 16 0.39
9 22 0.54
10 3 0.07
ACGTcount: A:0.82, C:0.00, G:0.16, T:0.02
Consensus pattern (9 bp):
AAAAGAAAG
Found at i:80096286 original size:20 final size:20
Alignment explanation
Indices: 80096258--80096317 Score: 66
Period size: 20 Copynumber: 2.9 Consensus size: 20
80096248 CTTCTATTTC
* *
80096258 AAAAAAAAAAGAAAAGAAAG
1 AAAAGAAAAAGAAAAAAAAG
*
80096278 AAAAGAAAAAGAGAAAAAAAT
1 AAAAGAAAAAGA-AAAAAAAG
80096299 AAAGAGAAAAAAGAAAAAA
1 AAA-AG-AAAAAGAAAAAA
80096318 TGGAGAGGCC
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
20 11 0.32
21 9 0.26
22 7 0.21
23 7 0.21
ACGTcount: A:0.83, C:0.00, G:0.15, T:0.02
Consensus pattern (20 bp):
AAAAGAAAAAGAAAAAAAAG
Found at i:80096318 original size:20 final size:21
Alignment explanation
Indices: 80096258--80096318 Score: 65
Period size: 22 Copynumber: 2.9 Consensus size: 21
80096248 CTTCTATTTC
80096258 AAAA-AAAAAAGAAAAGAA-AG
1 AAAAGAAAAAAGAAAA-AATAG
80096278 AAAAGAAAAAGAGAAAAAAATA-
1 AAAAGAAAAA-AG-AAAAAATAG
*
80096300 AAGAGAAAAAAGAAAAAAT
1 AAAAGAAAAAAGAAAAAAT
80096319 GGAGAGGCCA
Statistics
Matches: 36, Mismatches: 1, Indels: 8
0.80 0.02 0.18
Matches are distributed among these distances:
20 11 0.31
21 7 0.19
22 13 0.36
23 5 0.14
ACGTcount: A:0.82, C:0.00, G:0.15, T:0.03
Consensus pattern (21 bp):
AAAAGAAAAAAGAAAAAATAG
Found at i:80097239 original size:44 final size:44
Alignment explanation
Indices: 80097186--80097367 Score: 181
Period size: 44 Copynumber: 4.1 Consensus size: 44
80097176 CAAAGAAATA
* *
80097186 AGATTTGGCATCCCTATGTTTATAGGGAACAGATCAAAGATAGC
1 AGATCTGGCATCCCTATGTTTATAGGGAACAGATCGAAGATAGC
* * * * * * **
80097230 AGATCTGGCATTCCTATGCTTACAGCGAAGCAGATTGCAGATTTC
1 AGATCTGGCATCCCTATGTTTATAGGGAA-CAGATCGAAGATAGC
* * *
80097275 AG--CATGGCATCCCTGTGTTTATTGGGAACA-AGTTGAAGATAGC
1 AGATC-TGGCATCCCTATGTTTATAGGGAACAGA-TCGAAGATAGC
* *
80097318 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGC
1 AGATCTGGCATCCCTATGTTTATAGGGAACAGATCGAAGATAGC
80097362 AGATCT
1 AGATCT
80097368 AACCTTCAGA
Statistics
Matches: 109, Mismatches: 23, Indels: 12
0.76 0.16 0.08
Matches are distributed among these distances:
42 1 0.01
43 13 0.12
44 82 0.75
45 13 0.12
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.28
Consensus pattern (44 bp):
AGATCTGGCATCCCTATGTTTATAGGGAACAGATCGAAGATAGC
Found at i:80097565 original size:119 final size:119
Alignment explanation
Indices: 80097357--80097950 Score: 1017
Period size: 119 Copynumber: 5.0 Consensus size: 119
80097347 CAGATCGAAG
80097357 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
1 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
* *
80097422 TTACAAGGAACAAATCGAGGACATAGTAGATTTGACTCTCAGACGTTCTCAAAG
66 TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAT
*
80097476 ATAGTAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
1 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
80097541 TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAT
66 TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAT
* *
80097595 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGTAGATCCAAGATGATTTGGTATTCTTGTGT
1 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
80097660 TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAT
66 TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAT
* *
80097714 ATAACAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGT
1 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
*
80097779 TTACAAGAAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAT
66 TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAT
* * * * * **
80097833 ATAGTAGATCTAACCTTCAAATGTTTATACTGAAGCAGATCCAAGATGGTTTGACATCCTTGTAC
1 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
* * * *
80097898 TTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCAAATGTTCTCAAA
66 TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAA
80097951 CAGACTCAAG
Statistics
Matches: 452, Mismatches: 23, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
119 452 1.00
ACGTcount: A:0.34, C:0.18, G:0.19, T:0.30
Consensus pattern (119 bp):
ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAT
Found at i:80097974 original size:83 final size:83
Alignment explanation
Indices: 80097874--80098302 Score: 759
Period size: 83 Copynumber: 5.1 Consensus size: 83
80097864 GAAGCAGATC
* *
80097874 CAAGATGGTTTGACATCCTTGTACTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
80097939 AATGTTCTCAAACAGACT
66 AATGTTCTCAAACAGACT
80097957 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
80098022 AATGTTCTCAAACAGACT
66 AATGTTCTCAAACAGACT
*
80098040 TAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
*
80098105 AATATTCTCAAACAGACT
66 AATGTTCTCAAACAGACT
*
80098123 CAAGATGGTTTGGCATACTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
80098188 AATGTTCTCAAACATGACT
66 AATGTTCTCAAACA-GACT
* * *
80098207 CAAGATGGTTTAGGCATCCTTGTGCTTACAAGGAACAAGTCGAGGACCTTGCAGATATGATTCTC
1 CAAGATGGTTT-GGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTC
80098272 AAATGTTCTCAAACAGACT
65 AAATGTTCTCAAACAGACT
*
80098291 CAAGATGATTTG
1 CAAGATGGTTTG
80098303 ATGTCCTTAC
Statistics
Matches: 332, Mismatches: 12, Indels: 4
0.95 0.03 0.01
Matches are distributed among these distances:
83 239 0.72
84 29 0.09
85 64 0.19
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.27
Consensus pattern (83 bp):
CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
AATGTTCTCAAACAGACT
Found at i:80103794 original size:11 final size:11
Alignment explanation
Indices: 80103758--80103799 Score: 50
Period size: 11 Copynumber: 3.7 Consensus size: 11
80103748 TTTAAAATTT
*
80103758 AAAATAATTTA
1 AAAATAATATA
80103769 AATAA-AATCATA
1 AA-AATAAT-ATA
80103781 AAAATAATATA
1 AAAATAATATA
80103792 AAAATAAT
1 AAAATAAT
80103800 TTGAAGACTT
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
11 18 0.67
12 9 0.33
ACGTcount: A:0.69, C:0.02, G:0.00, T:0.29
Consensus pattern (11 bp):
AAAATAATATA
Found at i:80105450 original size:19 final size:18
Alignment explanation
Indices: 80105428--80105466 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
80105418 ATTTAGAATC
80105428 AAAACTAAAATAAATAATA
1 AAAACTAAAATAAAT-ATA
* *
80105447 AAAATTAAATTAAATATA
1 AAAACTAAAATAAATATA
80105465 AA
1 AA
80105467 GATATCAATA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 5 0.28
19 13 0.72
ACGTcount: A:0.72, C:0.03, G:0.00, T:0.26
Consensus pattern (18 bp):
AAAACTAAAATAAATATA
Found at i:80109798 original size:154 final size:154
Alignment explanation
Indices: 80109518--80109825 Score: 571
Period size: 154 Copynumber: 2.0 Consensus size: 154
80109508 GAATCATCCC
80109518 CATTCTGCAGAATATAAGATAAAATAAAAACTATACAACACAGAATGCTATCAAAGGTATCAATG
1 CATTCTGCAGAATATAAGATAAAATAAAAACTATACAACACAGAATGCTATCAAAGGTATCAATG
** *
80109583 TCTGCTACCATATAAAATGACAGTTGATGAAGGGAGCAAATTTTTTCTTTGAAGAACGTAAAATT
66 TCTGCTACCATATAAAATGACAGTTGATGAAGAAAGCAAACTTTTTCTTTGAAGAACGTAAAATT
80109648 CAAGCCTAAAATCAATGAAATCAA
131 CAAGCCTAAAATCAATGAAATCAA
*
80109672 CATTCTGCAGAATATAAGATAAAATAAAAACTATACATCACAGAATGCTATCAAAGGTATCAATG
1 CATTCTGCAGAATATAAGATAAAATAAAAACTATACAACACAGAATGCTATCAAAGGTATCAATG
80109737 TCTGCTACCATATAAAATGACAGTTGATGAAGAAAGCAAACTTTTTCTTTGAAGAACGTAAAATT
66 TCTGCTACCATATAAAATGACAGTTGATGAAGAAAGCAAACTTTTTCTTTGAAGAACGTAAAATT
*
80109802 CAAGCCTAAAATCAGTGAAATCAA
131 CAAGCCTAAAATCAATGAAATCAA
80109826 TCTATCTTAC
Statistics
Matches: 149, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
154 149 1.00
ACGTcount: A:0.45, C:0.15, G:0.14, T:0.26
Consensus pattern (154 bp):
CATTCTGCAGAATATAAGATAAAATAAAAACTATACAACACAGAATGCTATCAAAGGTATCAATG
TCTGCTACCATATAAAATGACAGTTGATGAAGAAAGCAAACTTTTTCTTTGAAGAACGTAAAATT
CAAGCCTAAAATCAATGAAATCAA
Found at i:80111984 original size:47 final size:47
Alignment explanation
Indices: 80111925--80112210 Score: 437
Period size: 47 Copynumber: 6.1 Consensus size: 47
80111915 GAAATGATAG
*
80111925 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
80111972 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
80112019 TAAGGCCTAACAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
80112066 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
80112113 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGCATATATGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * * * * * * * * *
80112160 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
80112207 TAAG
1 TAAG
80112211 TCCCGAAGGG
Statistics
Matches: 224, Mismatches: 15, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 224 1.00
ACGTcount: A:0.33, C:0.10, G:0.30, T:0.27
Consensus pattern (47 bp):
TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:80112385 original size:37 final size:37
Alignment explanation
Indices: 80112329--80112407 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
80112319 CCGAGCTCTA
* *
80112329 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
80112366 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
80112403 AAGAC
1 AAGAC
80112408 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:80114433 original size:8 final size:8
Alignment explanation
Indices: 80114422--80114495 Score: 69
Period size: 8 Copynumber: 8.9 Consensus size: 8
80114412 ATATTAAATA
80114422 TTAAATTT
1 TTAAATTT
*
80114430 TT-AAGTT
1 TTAAATTT
80114437 TTAAATTT
1 TTAAATTT
*
80114445 TTTAATTT
1 TTAAATTT
*
80114453 TTAATTTT
1 TTAAATTT
*
80114461 TTAATTTTT
1 TTAA-ATTT
80114470 TTAAAGATTT
1 TT-AA-ATTT
80114480 TTATAATTT
1 TTA-AATTT
80114489 TTAAATT
1 TTAAATT
80114496 AACATATAAA
Statistics
Matches: 55, Mismatches: 7, Indels: 8
0.79 0.10 0.11
Matches are distributed among these distances:
7 6 0.11
8 27 0.49
9 14 0.25
10 8 0.15
ACGTcount: A:0.32, C:0.00, G:0.03, T:0.65
Consensus pattern (8 bp):
TTAAATTT
Found at i:80114433 original size:15 final size:15
Alignment explanation
Indices: 80114415--80114468 Score: 63
Period size: 15 Copynumber: 3.6 Consensus size: 15
80114405 AACTAAAATA
*
80114415 TTAAATATTAAATTT
1 TTAAATTTTAAATTT
*
80114430 TTAAGTTTTAAATTT
1 TTAAATTTTAAATTT
* *
80114445 TTTAATTTTTAATTT
1 TTAAATTTTAAATTT
*
80114460 TTTAATTTT
1 TTAAATTTT
80114469 TTTAAAGATT
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
15 34 1.00
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (15 bp):
TTAAATTTTAAATTT
Found at i:80114449 original size:9 final size:9
Alignment explanation
Indices: 80114435--80114495 Score: 58
Period size: 9 Copynumber: 7.0 Consensus size: 9
80114425 AATTTTTAAG
80114435 TTTTAAATT
1 TTTTAAATT
80114444 TTTT-AA-T
1 TTTTAAATT
80114451 TTTT-AATT
1 TTTTAAATT
*
80114459 TTTTAATTT
1 TTTTAAATT
*
80114468 TTTTAAAGAT
1 TTTTAAA-TT
80114478 TTTTATAA-T
1 TTTTA-AATT
80114487 TTTTAAATT
1 TTTTAAATT
80114496 AACATATAAA
Statistics
Matches: 44, Mismatches: 3, Indels: 10
0.77 0.05 0.18
Matches are distributed among these distances:
7 7 0.16
8 9 0.20
9 20 0.45
10 6 0.14
11 2 0.05
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (9 bp):
TTTTAAATT
Found at i:80114469 original size:15 final size:15
Alignment explanation
Indices: 80114422--80114469 Score: 69
Period size: 15 Copynumber: 3.1 Consensus size: 15
80114412 ATATTAAATA
*
80114422 TTAAATTTTTAAGTTT
1 TTAATTTTTTAA-TTT
*
80114438 TAAATTTTTTAATTT
1 TTAATTTTTTAATTT
80114453 TTAATTTTTTAATTT
1 TTAATTTTTTAATTT
80114468 TT
1 TT
80114470 TTAAAGATTT
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
15 19 0.66
16 10 0.34
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.69
Consensus pattern (15 bp):
TTAATTTTTTAATTT
Found at i:80114739 original size:15 final size:14
Alignment explanation
Indices: 80114719--80114767 Score: 62
Period size: 14 Copynumber: 3.4 Consensus size: 14
80114709 TTAAAAGTTA
80114719 GTTTTAGGGTTTGGG
1 GTTTTAGGG-TTGGG
*
80114734 GTTTTAGGATTGGG
1 GTTTTAGGGTTGGG
* *
80114748 GTTTAAGGGTTGGA
1 GTTTTAGGGTTGGG
80114762 GTTTTA
1 GTTTTA
80114768 AAGGTTTATG
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
14 21 0.72
15 8 0.28
ACGTcount: A:0.14, C:0.00, G:0.41, T:0.45
Consensus pattern (14 bp):
GTTTTAGGGTTGGG
Found at i:80114809 original size:65 final size:65
Alignment explanation
Indices: 80114721--80114858 Score: 177
Period size: 65 Copynumber: 2.1 Consensus size: 65
80114711 AAAAGTTAGT
* * ** * *
80114721 TTTAGGGTTTGGGGTTTTAGGATTGGGGTTTAAGGGTTGGAGTTTTAAAGGTTTATGATTTGAGA
1 TTTAGGGTTTAGGGTGTTAGGATTAAGGTTTAACGGTTAGAGTTTTAAAGGTTTATGATTTGAGA
* * * * *
80114786 TTTAGGGTTTAGGGTGTTGGGATTAAGGTTTATCGTTTATAGTTTTAAGGGTTTATGATTTGAGA
1 TTTAGGGTTTAGGGTGTTAGGATTAAGGTTTAACGGTTAGAGTTTTAAAGGTTTATGATTTGAGA
80114851 TTTAGGGT
1 TTTAGGGT
80114859 CTGGCGTTTA
Statistics
Matches: 62, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
65 62 1.00
ACGTcount: A:0.20, C:0.01, G:0.34, T:0.45
Consensus pattern (65 bp):
TTTAGGGTTTAGGGTGTTAGGATTAAGGTTTAACGGTTAGAGTTTTAAAGGTTTATGATTTGAGA
Found at i:80114854 original size:22 final size:22
Alignment explanation
Indices: 80114764--80114858 Score: 74
Period size: 21 Copynumber: 4.4 Consensus size: 22
80114754 GGGTTGGAGT
*
80114764 TTTAAAGGTTTATGATTTGAGA
1 TTTAAGGGTTTATGATTTGAGA
* * *
80114786 TTT-AGGGTTTAGGGTGTTGGGA
1 TTTAAGGGTTTATGAT-TTGAGA
* *
80114808 -TTAA-GGTTTATCG-TTTATAGT
1 TTTAAGGGTTTAT-GATTT-GAGA
80114829 TTTAAGGGTTTATGATTTGAGA
1 TTTAAGGGTTTATGATTTGAGA
80114851 TTT-AGGGT
1 TTTAAGGGT
80114859 CTGGCGTTTA
Statistics
Matches: 56, Mismatches: 10, Indels: 15
0.69 0.12 0.19
Matches are distributed among these distances:
20 2 0.04
21 24 0.43
22 20 0.36
23 10 0.18
ACGTcount: A:0.23, C:0.01, G:0.29, T:0.46
Consensus pattern (22 bp):
TTTAAGGGTTTATGATTTGAGA
Found at i:80115657 original size:40 final size:40
Alignment explanation
Indices: 80115620--80115831 Score: 318
Period size: 40 Copynumber: 5.3 Consensus size: 40
80115610 TAAAAAAGCA
* **
80115620 CCGCTAATGCTCAATCTTTAGCGGTGCTTTCTTAAAAGCG
1 CCGCTAATGCTCAATCTTTAGCGGCGCTTTCTTAAAAATG
* *
80115660 CCGCTAGTGCTCAGATCTTTAGCGACGCTTTCTTAAAAATG
1 CCGCTAATGCTCA-ATCTTTAGCGGCGCTTTCTTAAAAATG
*
80115701 CCGCTAATGCTCGATCTTTAGCGGCGCTTTCTTAAAAATG
1 CCGCTAATGCTCAATCTTTAGCGGCGCTTTCTTAAAAATG
*
80115741 CCGCTAATGCTCGATCTTTAGCGGCGCTTTCTTAAAAATG
1 CCGCTAATGCTCAATCTTTAGCGGCGCTTTCTTAAAAATG
* *
80115781 CCACTAATGCTCAGATCTTTAGCAGCGCTTTCTTAAAAATG
1 CCGCTAATGCTCA-ATCTTTAGCGGCGCTTTCTTAAAAATG
80115822 CC-CTAATGCT
1 CCGCTAATGCT
80115832 TGATCTTAAA
Statistics
Matches: 159, Mismatches: 11, Indels: 4
0.91 0.06 0.02
Matches are distributed among these distances:
40 97 0.61
41 62 0.39
ACGTcount: A:0.24, C:0.25, G:0.18, T:0.32
Consensus pattern (40 bp):
CCGCTAATGCTCAATCTTTAGCGGCGCTTTCTTAAAAATG
Found at i:80115730 original size:81 final size:80
Alignment explanation
Indices: 80115620--80115838 Score: 323
Period size: 81 Copynumber: 2.7 Consensus size: 80
80115610 TAAAAAAGCA
* * * *
80115620 CCGCTAATGCTCAATCTTTAGCGGTGCTTTCTTAAAAGCGCCGCTAGTGCTCAGATCTTTAGCGA
1 CCGCTAATGCTCGATCTTTAGCGGCGCTTTCTTAAAAACGCCGCTAATGCTC-GATCTTTAGCGA
80115685 CGCTTTCTTAAAAATG
65 CGCTTTCTTAAAAATG
* *
80115701 CCGCTAATGCTCGATCTTTAGCGGCGCTTTCTTAAAAATGCCGCTAATGCTCGATCTTTAGCGGC
1 CCGCTAATGCTCGATCTTTAGCGGCGCTTTCTTAAAAACGCCGCTAATGCTCGATCTTTAGCGAC
80115766 GCTTTCTTAAAAATG
66 GCTTTCTTAAAAATG
* * * *
80115781 CCACTAATGCTCAGATCTTTAGCAGCGCTTTCTTAAAAATGCC-CTAATGCTTGATCTT
1 CCGCTAATGCTC-GATCTTTAGCGGCGCTTTCTTAAAAACGCCGCTAATGCTCGATCTT
80115839 AAAAACGCCG
Statistics
Matches: 128, Mismatches: 9, Indels: 3
0.91 0.06 0.02
Matches are distributed among these distances:
80 52 0.41
81 76 0.59
ACGTcount: A:0.24, C:0.25, G:0.18, T:0.33
Consensus pattern (80 bp):
CCGCTAATGCTCGATCTTTAGCGGCGCTTTCTTAAAAACGCCGCTAATGCTCGATCTTTAGCGAC
GCTTTCTTAAAAATG
Found at i:80115810 original size:121 final size:120
Alignment explanation
Indices: 80115620--80115838 Score: 350
Period size: 121 Copynumber: 1.8 Consensus size: 120
80115610 TAAAAAAGCA
* * * *
80115620 CCGCTAATGCTCAATCTTTAGCGGTGCTTTCTTAAAAGCGCCGCTAGTGCTCAGATCTTTAGCGA
1 CCGCTAATGCTCAATCTTTAGCGGCGCTTTCTTAAAAACGCCACTAATGCTCAGATCTTTAGCGA
80115685 CGCTTTCTTAAAAATGCCGCTAATGCTCGATCTTTAGCGGCGCTTTCTTAAAAATG
66 CGCTTTCTTAAAAATGCC-CTAATGCTCGATCTTTAGCGGCGCTTTCTTAAAAATG
* *
80115741 CCGCTAATGCTCGATCTTTAGCGGCGCTTTCTTAAAAATGCCACTAATGCTCAGATCTTTAGC-A
1 CCGCTAATGCTCAATCTTTAGCGGCGCTTTCTTAAAAACGCCACTAATGCTCAGATCTTTAGCGA
*
80115805 GCGCTTTCTTAAAAATGCCCTAATGCTTGATCTT
66 -CGCTTTCTTAAAAATGCCCTAATGCTCGATCTT
80115839 AAAAACGCCG
Statistics
Matches: 90, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
120 15 0.17
121 75 0.83
ACGTcount: A:0.24, C:0.25, G:0.18, T:0.33
Consensus pattern (120 bp):
CCGCTAATGCTCAATCTTTAGCGGCGCTTTCTTAAAAACGCCACTAATGCTCAGATCTTTAGCGA
CGCTTTCTTAAAAATGCCCTAATGCTCGATCTTTAGCGGCGCTTTCTTAAAAATG
Found at i:80115862 original size:25 final size:24
Alignment explanation
Indices: 80115811--80115862 Score: 59
Period size: 24 Copynumber: 2.1 Consensus size: 24
80115801 AGCAGCGCTT
* * **
80115811 TCTTAAAAATGCCCTAATGCTTGA
1 TCTTAAAAACGCCCTAATACTCAA
80115835 TCTTAAAAACGCCGCTAATACTCAA
1 TCTTAAAAACGCC-CTAATACTCAA
80115860 TCT
1 TCT
80115863 ATTCGATTTT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
24 12 0.52
25 11 0.48
ACGTcount: A:0.35, C:0.25, G:0.10, T:0.31
Consensus pattern (24 bp):
TCTTAAAAACGCCCTAATACTCAA
Found at i:80117978 original size:27 final size:27
Alignment explanation
Indices: 80117936--80118069 Score: 175
Period size: 27 Copynumber: 5.0 Consensus size: 27
80117926 AGAGGAAGCG
*
80117936 TCCTGGTGGCTATGCCACAAATATCTAA
1 TCCTGGTGGCTATGCCACATATATCT-A
*
80117964 T-CTGGTGGCTCTGCCACATATATCTA
1 TCCTGGTGGCTATGCCACATATATCTA
*
80117990 TCCTGGTGGCTATACCACA-ATTATCTGA
1 TCCTGGTGGCTATGCCACATA-TATCT-A
* *
80118018 T-CTGGTGGCTTTGCCACATATATCTG
1 TCCTGGTGGCTATGCCACATATATCTA
80118044 TCCTGGTGGCTATGCCACATATATCT
1 TCCTGGTGGCTATGCCACATATATCT
80118070 GTATCTAGTG
Statistics
Matches: 93, Mismatches: 8, Indels: 11
0.83 0.07 0.10
Matches are distributed among these distances:
26 4 0.04
27 85 0.91
28 4 0.04
ACGTcount: A:0.22, C:0.25, G:0.19, T:0.34
Consensus pattern (27 bp):
TCCTGGTGGCTATGCCACATATATCTA
Found at i:80118021 original size:54 final size:54
Alignment explanation
Indices: 80117936--80118075 Score: 210
Period size: 54 Copynumber: 2.6 Consensus size: 54
80117926 AGAGGAAGCG
* *
80117936 TCCTGGTGGCTATGCCACAAATATCTAATCTGGTGGCTCTGCCACATATATCTA
1 TCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTA
* * *
80117990 TCCTGGTGGCTATACCACAATTATCTGATCTGGTGGCTTTGCCACATATATCTG
1 TCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTA
80118044 TCCTGGTGGCTATGCCAC-ATATATCTGTATCT
1 TCCTGGTGGCTATGCCACAAT-TATCTG-ATCT
80118076 AGTGACTTCA
Statistics
Matches: 78, Mismatches: 6, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
53 2 0.03
54 72 0.92
55 4 0.05
ACGTcount: A:0.21, C:0.25, G:0.19, T:0.34
Consensus pattern (54 bp):
TCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTA
Found at i:80118095 original size:54 final size:52
Alignment explanation
Indices: 80117935--80118097 Score: 179
Period size: 54 Copynumber: 3.0 Consensus size: 52
80117925 TAGAGGAAGC
*
80117935 GTCCTGGTGGCTATGCCACAAATATCTAATCTGGTGGC-TCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCAC-AATATCTGATCTGGTGGCTTCT--CACATATATCT
* *
80117989 ATCCTGGTGGCTATACCACAATTATCTGATCTGGTGGCTT-TGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAA-TATCTGATCTGGTGGCTTCT--CACATATATCT
* *
80118043 GTCCTGGTGGCTATGCCACATATATCTGTATCTAGTGACTTCATCACA-ATATCT
1 GTCCTGGTGGCTATGCCACA-ATATCTG-ATCTGGTGGCTTC-TCACATATATCT
80118097 G
1 G
80118098 GCAGCCTCAC
Statistics
Matches: 96, Mismatches: 7, Indels: 12
0.83 0.06 0.10
Matches are distributed among these distances:
53 2 0.02
54 77 0.80
55 16 0.17
57 1 0.01
ACGTcount: A:0.23, C:0.25, G:0.19, T:0.34
Consensus pattern (52 bp):
GTCCTGGTGGCTATGCCACAATATCTGATCTGGTGGCTTCTCACATATATCT
Found at i:80120889 original size:21 final size:20
Alignment explanation
Indices: 80120864--80120911 Score: 53
Period size: 21 Copynumber: 2.4 Consensus size: 20
80120854 GTATGTTTGT
*
80120864 ATTTATTTTATATTTTTATTG
1 ATTTATTTT-TATTTTTAATG
*
80120885 ATTTATAATTTATTTTTAATG
1 ATTTAT-TTTTATTTTTAATG
80120906 -TTTATT
1 ATTTATT
80120912 GAAGTAAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
20 5 0.22
21 16 0.70
22 2 0.09
ACGTcount: A:0.27, C:0.00, G:0.04, T:0.69
Consensus pattern (20 bp):
ATTTATTTTTATTTTTAATG
Found at i:80121650 original size:3 final size:3
Alignment explanation
Indices: 80121642--80121667 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
80121632 CTTGCCGCCC
80121642 TCT TCT TCT TCT TCT TCT TCT TCT TC
1 TCT TCT TCT TCT TCT TCT TCT TCT TC
80121668 CATCGCAGCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65
Consensus pattern (3 bp):
TCT
Found at i:80121808 original size:24 final size:25
Alignment explanation
Indices: 80121772--80121828 Score: 91
Period size: 24 Copynumber: 2.4 Consensus size: 25
80121762 TGTCAAATCC
80121772 TTTTTTT-TAAACAGATTTGTG-TT
1 TTTTTTTGTAAACAGATTTGTGCTT
*
80121795 TTTTTTTGTCAACAGATTTGTGCTT
1 TTTTTTTGTAAACAGATTTGTGCTT
80121820 TTTTTTTGT
1 TTTTTTTGT
80121829 TAAAAGACCT
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
23 7 0.23
24 13 0.42
25 11 0.35
ACGTcount: A:0.16, C:0.07, G:0.14, T:0.63
Consensus pattern (25 bp):
TTTTTTTGTAAACAGATTTGTGCTT
Found at i:80126887 original size:327 final size:327
Alignment explanation
Indices: 80126293--80126946 Score: 1308
Period size: 327 Copynumber: 2.0 Consensus size: 327
80126283 CCAAACTCGG
80126293 CAGCGCCTCAACACTATGGGCAACAAGGTCTAGCACTTGGTGTTCCCATTACCTCACAGAAGCAC
1 CAGCGCCTCAACACTATGGGCAACAAGGTCTAGCACTTGGTGTTCCCATTACCTCACAGAAGCAC
80126358 CAATATCCTCTCCAAGGTTACATGCAATCGGCTGAGAAGGGCCCTTGGTCGACACTCGATCGGAC
66 CAATATCCTCTCCAAGGTTACATGCAATCGGCTGAGAAGGGCCCTTGGTCGACACTCGATCGGAC
80126423 TCTGACTGCTTTTCTGATGTTTCAAAACTACTGTCATCGTTGTTACTTTATTGACTTCGAATTCT
131 TCTGACTGCTTTTCTGATGTTTCAAAACTACTGTCATCGTTGTTACTTTATTGACTTCGAATTCT
80126488 TATATAGGTTGCATCACTTTTTGACAAATTGCTGAGAACGTCGACCATGGAACAGCATGTGAGTT
196 TATATAGGTTGCATCACTTTTTGACAAATTGCTGAGAACGTCGACCATGGAACAGCATGTGAGTT
80126553 TTTTTTTTTTTTTTATTGAATAAGATGCAAGTTATATGAGACATTATGGGGAGTGGCTAATATAT
261 TTTTTTTTTTTTTTATTGAATAAGATGCAAGTTATATGAGACATTATGGGGAGTGGCTAATATAT
80126618 AA
326 AA
80126620 CAGCGCCTCAACACTATGGGCAACAAGGTCTAGCACTTGGTGTTCCCATTACCTCACAGAAGCAC
1 CAGCGCCTCAACACTATGGGCAACAAGGTCTAGCACTTGGTGTTCCCATTACCTCACAGAAGCAC
80126685 CAATATCCTCTCCAAGGTTACATGCAATCGGCTGAGAAGGGCCCTTGGTCGACACTCGATCGGAC
66 CAATATCCTCTCCAAGGTTACATGCAATCGGCTGAGAAGGGCCCTTGGTCGACACTCGATCGGAC
80126750 TCTGACTGCTTTTCTGATGTTTCAAAACTACTGTCATCGTTGTTACTTTATTGACTTCGAATTCT
131 TCTGACTGCTTTTCTGATGTTTCAAAACTACTGTCATCGTTGTTACTTTATTGACTTCGAATTCT
80126815 TATATAGGTTGCATCACTTTTTGACAAATTGCTGAGAACGTCGACCATGGAACAGCATGTGAGTT
196 TATATAGGTTGCATCACTTTTTGACAAATTGCTGAGAACGTCGACCATGGAACAGCATGTGAGTT
80126880 TTTTTTTTTTTTTTATTGAATAAGATGCAAGTTATATGAGACATTATGGGGAGTGGCTAATATAT
261 TTTTTTTTTTTTTTATTGAATAAGATGCAAGTTATATGAGACATTATGGGGAGTGGCTAATATAT
80126945 AA
326 AA
80126947 AAAATGGTGC
Statistics
Matches: 327, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
327 327 1.00
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.33
Consensus pattern (327 bp):
CAGCGCCTCAACACTATGGGCAACAAGGTCTAGCACTTGGTGTTCCCATTACCTCACAGAAGCAC
CAATATCCTCTCCAAGGTTACATGCAATCGGCTGAGAAGGGCCCTTGGTCGACACTCGATCGGAC
TCTGACTGCTTTTCTGATGTTTCAAAACTACTGTCATCGTTGTTACTTTATTGACTTCGAATTCT
TATATAGGTTGCATCACTTTTTGACAAATTGCTGAGAACGTCGACCATGGAACAGCATGTGAGTT
TTTTTTTTTTTTTTATTGAATAAGATGCAAGTTATATGAGACATTATGGGGAGTGGCTAATATAT
AA
Found at i:80129342 original size:89 final size:89
Alignment explanation
Indices: 80129234--80129411 Score: 356
Period size: 89 Copynumber: 2.0 Consensus size: 89
80129224 TACTTCGCAG
80129234 AAAACAGAGTCTTTCATATTCAGAAATTAAGTACGATACAAACATACCTGTATAGATTACACATT
1 AAAACAGAGTCTTTCATATTCAGAAATTAAGTACGATACAAACATACCTGTATAGATTACACATT
80129299 TCACATGTTCATTTTCATATTTCA
66 TCACATGTTCATTTTCATATTTCA
80129323 AAAACAGAGTCTTTCATATTCAGAAATTAAGTACGATACAAACATACCTGTATAGATTACACATT
1 AAAACAGAGTCTTTCATATTCAGAAATTAAGTACGATACAAACATACCTGTATAGATTACACATT
80129388 TCACATGTTCATTTTCATATTTCA
66 TCACATGTTCATTTTCATATTTCA
80129412 TACTTTGTCA
Statistics
Matches: 89, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
89 89 1.00
ACGTcount: A:0.38, C:0.18, G:0.09, T:0.35
Consensus pattern (89 bp):
AAAACAGAGTCTTTCATATTCAGAAATTAAGTACGATACAAACATACCTGTATAGATTACACATT
TCACATGTTCATTTTCATATTTCA
Found at i:80129532 original size:42 final size:43
Alignment explanation
Indices: 80129473--80129588 Score: 132
Period size: 44 Copynumber: 2.7 Consensus size: 43
80129463 TAATGCCAAC
* * *
80129473 GTCCCAGACGTGGTCTTACATGT-AA-TCAGATACGATGC-TGAT
1 GTCCCAGACATGGTCTTACACGTAAATTCAAAT-CGATGCTTG-T
80129515 GTCCCAGACATGGTCTTACACGTAAATTTCAAATCGATGCTTGT
1 GTCCCAGACATGGTCTTACACGTAAA-TTCAAATCGATGCTTGT
*
80129559 GTCCCAGACACGGTCTTACACG-ATAATTCA
1 GTCCCAGACATGGTCTTACACGTA-AATTCA
80129589 GATTAGTACC
Statistics
Matches: 65, Mismatches: 4, Indels: 9
0.83 0.05 0.12
Matches are distributed among these distances:
42 21 0.32
43 7 0.11
44 30 0.46
45 7 0.11
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.28
Consensus pattern (43 bp):
GTCCCAGACATGGTCTTACACGTAAATTCAAATCGATGCTTGT
Found at i:80136551 original size:44 final size:42
Alignment explanation
Indices: 80136459--80136577 Score: 127
Period size: 44 Copynumber: 2.7 Consensus size: 42
80136449 TAATGCCAAC
* *
80136459 GTCCCAGACGTGGTCTTACATGTAATCAGATATGATGCTGAT
1 GTCCCAGACATGGTCTTACACGTAATCAGATATGATGCTGAT
80136501 GTCCCAGACATGGTCTTACACGTAAATTTCA-A-ATCGATGCTTG-T
1 GTCCCAGACATGGTCTTACACGT-AA--TCAGATAT-GATGC-TGAT
*
80136545 GTCCCAGACACGGTCTTACACGATAATTCAGAT
1 GTCCCAGACATGGTCTTACACG-TAA-TCAGAT
80136578 TAGTACCAAC
Statistics
Matches: 66, Mismatches: 3, Indels: 13
0.80 0.04 0.16
Matches are distributed among these distances:
42 21 0.32
43 8 0.12
44 31 0.47
45 6 0.09
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.29
Consensus pattern (42 bp):
GTCCCAGACATGGTCTTACACGTAATCAGATATGATGCTGAT
Found at i:80138247 original size:25 final size:24
Alignment explanation
Indices: 80138208--80138266 Score: 75
Period size: 24 Copynumber: 2.5 Consensus size: 24
80138198 TAATTTAGCC
* *
80138208 ATTTTTATTTTATTTTATTTTTAT
1 ATTTTTATTTTATTTAAATTTTAT
*
80138232 ATTTTTGTTTTAATTTAAATTTTAT
1 ATTTTTATTTT-ATTTAAATTTTAT
80138257 A-TTTTATTTT
1 ATTTTTATTTT
80138267 TTCTTCTGTT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
24 18 0.60
25 12 0.40
ACGTcount: A:0.24, C:0.00, G:0.02, T:0.75
Consensus pattern (24 bp):
ATTTTTATTTTATTTAAATTTTAT
Found at i:80138267 original size:25 final size:24
Alignment explanation
Indices: 80138210--80138267 Score: 66
Period size: 25 Copynumber: 2.4 Consensus size: 24
80138200 ATTTAGCCAT
* *
80138210 TTTTA-TTTTATTTTATTTTTATA
1 TTTTATTTTTATTTAAATTTTATA
80138233 TTTT-TGTTTTAATTTAAATTTTATA
1 TTTTAT-TTTT-ATTTAAATTTTATA
80138258 TTTTATTTTT
1 TTTTATTTTT
80138268 TCTTCTGTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
23 4 0.14
24 4 0.14
25 20 0.69
26 1 0.03
ACGTcount: A:0.22, C:0.00, G:0.02, T:0.76
Consensus pattern (24 bp):
TTTTATTTTTATTTAAATTTTATA
Found at i:80140101 original size:45 final size:45
Alignment explanation
Indices: 80140037--80140127 Score: 173
Period size: 45 Copynumber: 2.0 Consensus size: 45
80140027 TTCTCTAAAA
*
80140037 TAAACTGCCCAACAAACTAGAAGATCCAGGGAGTTTTAATATTCT
1 TAAACTACCCAACAAACTAGAAGATCCAGGGAGTTTTAATATTCT
80140082 TAAACTACCCAACAAACTAGAAGATCCAGGGAGTTTTAATATTCT
1 TAAACTACCCAACAAACTAGAAGATCCAGGGAGTTTTAATATTCT
80140127 T
1 T
80140128 TGTCTCATTG
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.38, C:0.20, G:0.14, T:0.27
Consensus pattern (45 bp):
TAAACTACCCAACAAACTAGAAGATCCAGGGAGTTTTAATATTCT
Found at i:80144851 original size:31 final size:31
Alignment explanation
Indices: 80144816--80144879 Score: 128
Period size: 31 Copynumber: 2.1 Consensus size: 31
80144806 AATAATAAAG
80144816 AAAATTAAGGGGTTATAACTCGATTAGAAAC
1 AAAATTAAGGGGTTATAACTCGATTAGAAAC
80144847 AAAATTAAGGGGTTATAACTCGATTAGAAAC
1 AAAATTAAGGGGTTATAACTCGATTAGAAAC
80144878 AA
1 AA
80144880 TCATGAATCT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.47, C:0.09, G:0.19, T:0.25
Consensus pattern (31 bp):
AAAATTAAGGGGTTATAACTCGATTAGAAAC
Found at i:80144949 original size:26 final size:26
Alignment explanation
Indices: 80144894--80144989 Score: 60
Period size: 26 Copynumber: 3.8 Consensus size: 26
80144884 GAATCTTTCA
* * * *
80144894 AAAAATAATAATAATAAATTGAAGAG
1 AAAAATAATAATAAAAAACTGAAAAC
80144920 AAAAATAATAATAAAACAACT-AAAAC
1 AAAAATAATAATAAAA-AACTGAAAAC
*
80144946 -AAAATAA-AA-AATAAAGA-T-AAAAA
1 AAAAATAATAATAA-AAA-ACTGAAAAC
*
80144969 ATAAAATAATAATAATAAACT
1 A-AAAATAATAATAAAAAACT
80144990 CAATAATATC
Statistics
Matches: 56, Mismatches: 6, Indels: 16
0.72 0.08 0.21
Matches are distributed among these distances:
23 8 0.14
24 5 0.09
25 15 0.27
26 23 0.41
27 5 0.09
ACGTcount: A:0.72, C:0.04, G:0.04, T:0.20
Consensus pattern (26 bp):
AAAAATAATAATAAAAAACTGAAAAC
Found at i:80144967 original size:13 final size:12
Alignment explanation
Indices: 80144941--80144987 Score: 58
Period size: 13 Copynumber: 3.7 Consensus size: 12
80144931 TAAAACAACT
*
80144941 AAAACAAAATAA
1 AAAATAAAATAA
80144953 AAAATAAAGATAA
1 AAAATAAA-ATAA
80144966 AAAATAAAATAA
1 AAAATAAAATAA
80144978 TAATAATAAA
1 -AA-AATAAA
80144988 CTCAATAATA
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
12 11 0.35
13 14 0.45
14 6 0.19
ACGTcount: A:0.79, C:0.02, G:0.02, T:0.17
Consensus pattern (12 bp):
AAAATAAAATAA
Found at i:80145066 original size:21 final size:21
Alignment explanation
Indices: 80145040--80145090 Score: 77
Period size: 21 Copynumber: 2.4 Consensus size: 21
80145030 TAGTAAAAAT
80145040 AAATAAAAAATACGAAAGAA-A
1 AAATAAAAAATA-GAAAGAAGA
*
80145061 AAATAAAAAATAGAAATAAGA
1 AAATAAAAAATAGAAAGAAGA
80145082 AAATAAAAA
1 AAATAAAAA
80145091 TAATAAAAGT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
20 6 0.21
21 22 0.79
ACGTcount: A:0.78, C:0.02, G:0.08, T:0.12
Consensus pattern (21 bp):
AAATAAAAAATAGAAAGAAGA
Found at i:80145068 original size:7 final size:7
Alignment explanation
Indices: 80145040--80145090 Score: 50
Period size: 7 Copynumber: 7.3 Consensus size: 7
80145030 TAGTAAAAAT
80145040 AAATAAA
1 AAATAAA
**
80145047 AAATACG
1 AAATAAA
*
80145054 AAAGAAA
1 AAATAAA
80145061 AAATAAA
1 AAATAAA
*
80145068 AAAT-AG
1 AAATAAA
80145074 AAATAAGA
1 AAATAA-A
80145082 AAATAAA
1 AAATAAA
80145089 AA
1 AA
80145091 TAATAAAAGT
Statistics
Matches: 34, Mismatches: 8, Indels: 4
0.74 0.17 0.09
Matches are distributed among these distances:
6 5 0.15
7 23 0.68
8 6 0.18
ACGTcount: A:0.78, C:0.02, G:0.08, T:0.12
Consensus pattern (7 bp):
AAATAAA
Found at i:80145084 original size:14 final size:13
Alignment explanation
Indices: 80145059--80145098 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 13
80145049 ATACGAAAGA
80145059 AAAAATAAAAAAT
1 AAAAATAAAAAAT
*
80145072 AGAAATAAGAAAAT
1 AAAAATAA-AAAAT
80145086 AAAAATAATAAAA
1 AAAAATAA-AAAA
80145099 GTATATAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
13 7 0.30
14 16 0.70
ACGTcount: A:0.80, C:0.00, G:0.05, T:0.15
Consensus pattern (13 bp):
AAAAATAAAAAAT
Found at i:80145106 original size:27 final size:26
Alignment explanation
Indices: 80145059--80145111 Score: 63
Period size: 27 Copynumber: 2.0 Consensus size: 26
80145049 ATACGAAAGA
80145059 AAAAATAAAAAATAGAAATAAGAAAAT
1 AAAAATAAAAAATAGAAATAA-AAAAT
* *
80145086 AAAAATAATAAA-AGTATATAAAAAAT
1 AAAAATAAAAAATAG-AAATAAAAAAT
80145112 TAAGAATATA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
26 7 0.30
27 16 0.70
ACGTcount: A:0.75, C:0.00, G:0.06, T:0.19
Consensus pattern (26 bp):
AAAAATAAAAAATAGAAATAAAAAAT
Found at i:80148415 original size:6 final size:6
Alignment explanation
Indices: 80148403--80148450 Score: 57
Period size: 6 Copynumber: 8.5 Consensus size: 6
80148393 AAAAATTAGT
* *
80148403 AATTAA AAATAA AATTAA AATTAA AATT-A AA-TAC AA-TAA AATTAA
1 AATTAA AATTAA AATTAA AATTAA AATTAA AATTAA AATTAA AATTAA
80148448 AAT
1 AAT
80148451 GGCTAAATTA
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
4 1 0.03
5 9 0.25
6 26 0.72
ACGTcount: A:0.69, C:0.02, G:0.00, T:0.29
Consensus pattern (6 bp):
AATTAA
Found at i:80151455 original size:14 final size:14
Alignment explanation
Indices: 80151436--80151463 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
80151426 AAAAAGAAAG
80151436 ATAAAAATAATAAA
1 ATAAAAATAATAAA
80151450 ATAAAAATAATAAA
1 ATAAAAATAATAAA
80151464 CTCAATAATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (14 bp):
ATAAAAATAATAAA
Found at i:80151581 original size:20 final size:19
Alignment explanation
Indices: 80151558--80151624 Score: 70
Period size: 20 Copynumber: 3.6 Consensus size: 19
80151548 GAAATAGTAA
80151558 AATAAAATAATAATAAAAAT
1 AATAAAAT-ATAATAAAAAT
*
80151578 AATAAAAGTATATTAAAAAT
1 AATAAAA-TATAATAAAAAT
80151598 --TAAAATATAA-AAAAAT
1 AATAAAATATAATAAAAAT
*
80151614 TA-AAAATATAA
1 AATAAAATATAA
80151625 GTATAAGAAC
Statistics
Matches: 42, Mismatches: 2, Indels: 9
0.79 0.04 0.17
Matches are distributed among these distances:
16 6 0.14
17 13 0.31
18 5 0.12
20 17 0.40
21 1 0.02
ACGTcount: A:0.72, C:0.00, G:0.01, T:0.27
Consensus pattern (19 bp):
AATAAAATATAATAAAAAT
Found at i:80151619 original size:17 final size:17
Alignment explanation
Indices: 80151538--80151624 Score: 70
Period size: 17 Copynumber: 5.1 Consensus size: 17
80151528 AAGGAAAGAG
*
80151538 AAAAAAAATAGAAATAGT
1 AAAAAAAATAAAAATA-T
*
80151556 AAAATAAAAT-AATA-AT
1 AAAA-AAAATAAAAATAT
* *
80151572 AAAAATAATAAAAGTAT
1 AAAAAAAATAAAAATAT
** *
80151589 ATTAAAAATTAAAATAT
1 AAAAAAAATAAAAATAT
*
80151606 AAAAAAATTAAAAATAT
1 AAAAAAAATAAAAATAT
80151623 AA
1 AA
80151625 GTATAAGAAC
Statistics
Matches: 52, Mismatches: 14, Indels: 7
0.71 0.19 0.10
Matches are distributed among these distances:
15 4 0.08
16 7 0.13
17 30 0.58
18 6 0.12
19 5 0.10
ACGTcount: A:0.72, C:0.00, G:0.03, T:0.24
Consensus pattern (17 bp):
AAAAAAAATAAAAATAT
Found at i:80151691 original size:17 final size:17
Alignment explanation
Indices: 80151556--80151700 Score: 56
Period size: 16 Copynumber: 8.4 Consensus size: 17
80151546 TAGAAATAGT
80151556 AAAA-TAAAATAATAATA
1 AAAATTAAAATAAT-ATA
80151573 AAAATAATAAAAGT-ATATTA
1 AAAAT--TAAAA-TAATA-TA
*
80151593 AAAATTAAAAT-ATAAA
1 AAAATTAAAATAATATA
80151609 AAAATTAAAAATATAAGTATA
1 AAAATT--AAA-ATAA-TATA
* *
80151630 AGAACACTAAATTAAT-TA
1 A-AA-ATTAAAATAATATA
* * *
80151648 ATTAATT--AGTAAAATA
1 A-AAATTAAAATAATATA
80151664 AAAA-T-AAATAATATA
1 AAAATTAAAATAATATA
*
80151679 AAAATTAAAATAA-ATT
1 AAAATTAAAATAATATA
80151695 AAAATT
1 AAAATT
80151701 GGGGTGTTAA
Statistics
Matches: 99, Mismatches: 13, Indels: 33
0.68 0.09 0.23
Matches are distributed among these distances:
14 1 0.01
15 17 0.17
16 19 0.19
17 16 0.16
18 12 0.12
19 4 0.04
20 18 0.18
21 8 0.08
22 2 0.02
23 2 0.02
ACGTcount: A:0.67, C:0.01, G:0.03, T:0.29
Consensus pattern (17 bp):
AAAATTAAAATAATATA
Found at i:80157585 original size:30 final size:30
Alignment explanation
Indices: 80157540--80157739 Score: 176
Period size: 30 Copynumber: 6.7 Consensus size: 30
80157530 ACAGCTTCGG
80157540 CTATC-AATTATGAAAAGGGATGGTGACGA
1 CTATCAAATTATGAAAAGGGATGGTGACGA
* * *
80157569 CTATCGAATAATGAAAAGGGATGGTGATGA
1 CTATCAAATTATGAAAAGGGATGGTGACGA
* ** *
80157599 CCATCAAATTATGAAAAGGGATGGCT-TTGG
1 CTATCAAATTATGAAAAGGGATGG-TGACGA
* * * *
80157629 CTATC-GATCTATGAAAAGGGATAGCT-CCGG
1 CTATCAAAT-TATGAAAAGGGAT-GGTGACGA
*
80157659 CTATC-AATTATGAAAAGGGATAGTGACGA
1 CTATCAAATTATGAAAAGGGATGGTGACGA
* ** * *
80157688 CCATCAAACAATAAAAAGAGATGGTGACGA
1 CTATCAAATTATGAAAAGGGATGGTGACGA
*
80157718 CCATCAAATTATGAAAAGGGAT
1 CTATCAAATTATGAAAAGGGAT
80157740 AGCTTCGGCT
Statistics
Matches: 138, Mismatches: 27, Indels: 11
0.78 0.15 0.06
Matches are distributed among these distances:
28 1 0.01
29 26 0.19
30 109 0.79
31 2 0.01
ACGTcount: A:0.40, C:0.13, G:0.25, T:0.23
Consensus pattern (30 bp):
CTATCAAATTATGAAAAGGGATGGTGACGA
Found at i:80157620 original size:60 final size:59
Alignment explanation
Indices: 80157545--80157769 Score: 197
Period size: 60 Copynumber: 3.8 Consensus size: 59
80157535 TTCGGCTATC
*
80157545 AATTATGAAAAGGGATGGTGACGACTATCGAATAATGAAAAGGGATGGTGATGACCATCA
1 AATTATGAAAAGGGATGGT-ACGACTATCGAATAATGAAAAGGGATGGTGACGACCATCA
** * * * * * *
80157605 AATTATGAAAAGGGATGGCTTTGGCTATCG-ATCTATGAAAAGGGATAGCT-CCGGCTATC-
1 AATTATGAAAAGGGATGG-TACGACTATCGAAT-AATGAAAAGGGAT-GGTGACGACCATCA
* * * * * *
80157664 AATTATGAAAAGGGATAGTGACGACCATCAAACAATAAAAAGAGATGGTGACGACCATCA
1 AATTATGAAAAGGGATGGT-ACGACTATCGAATAATGAAAAGGGATGGTGACGACCATCA
* * *
80157724 AATTATGAAAAGGGATAGCTTCGGCTATCGAACT-ATGAAAAGGGAT
1 AATTATGAAAAGGGAT-GGTACGACTATCGAA-TAATGAAAAGGGAT
80157770 AATTTCGATT
Statistics
Matches: 124, Mismatches: 32, Indels: 18
0.71 0.18 0.10
Matches are distributed among these distances:
58 3 0.02
59 40 0.32
60 77 0.62
61 4 0.03
ACGTcount: A:0.39, C:0.13, G:0.26, T:0.22
Consensus pattern (59 bp):
AATTATGAAAAGGGATGGTACGACTATCGAATAATGAAAAGGGATGGTGACGACCATCA
Found at i:80157705 original size:89 final size:89
Alignment explanation
Indices: 80157523--80157770 Score: 268
Period size: 89 Copynumber: 2.8 Consensus size: 89
80157513 TCAATCTATG
** * * *
80157523 AAAAGGGACAGCTTCGGCTATCAATTATGAAAAGGGAT-GGTGACGACTATCGAATAATGAAAAG
1 AAAAGGGATGGCTTCGGCTATCAATTATGAAAAGGGATAGCT-ACGGCTATCGAATTATGAAAAG
* * ** *
80157587 GGATGGTGATGACCATCAAATTATG
65 GGATAGTGACGACCATCAAACAATA
* * *
80157612 AAAAGGGATGGCTTTGGCTATCGATCTATGAAAAGGGATAGCTCCGGCTATC-AATTATGAAAAG
1 AAAAGGGATGGCTTCGGCTATCAAT-TATGAAAAGGGATAGCTACGGCTATCGAATTATGAAAAG
80157676 GGATAGTGACGACCATCAAACAATA
65 GGATAGTGACGACCATCAAACAATA
* * * * * *
80157701 AAAAGAGATGG-TGACGACCATCAAATTATGAAAAGGGATAGCTTCGGCTATCGAACTATGAAAA
1 AAAAGGGATGGCT-TCGGCTATC-AATTATGAAAAGGGATAGCTACGGCTATCGAATTATGAAAA
80157765 GGGATA
64 GGGATA
80157771 ATTTCGATTA
Statistics
Matches: 133, Mismatches: 21, Indels: 9
0.82 0.13 0.06
Matches are distributed among these distances:
88 1 0.01
89 92 0.69
90 38 0.29
91 2 0.02
ACGTcount: A:0.39, C:0.14, G:0.26, T:0.22
Consensus pattern (89 bp):
AAAAGGGATGGCTTCGGCTATCAATTATGAAAAGGGATAGCTACGGCTATCGAATTATGAAAAGG
GATAGTGACGACCATCAAACAATA
Found at i:80157727 original size:119 final size:119
Alignment explanation
Indices: 80157516--80157770 Score: 402
Period size: 119 Copynumber: 2.1 Consensus size: 119
80157506 GCGATCATCA
* * * * * *
80157516 ATCTATGAAAAGGGACAGCTTCGGCTATCAATTATGAAAAGGGATGGTGACGACTATCGAATAAT
1 ATCTATGAAAAGGGATAGCTCCGGCTATCAATTATGAAAAGGGATAGTGACGACCATCAAACAAT
* * * * *
80157581 GAAAAGGGATGGTGATGACCATCAAATTATGAAAAGGGATGGCTTTGGCTATCG
66 AAAAAGAGATGGTGACGACCATCAAATTATGAAAAGGGATAGCTTCGGCTATCG
80157635 ATCTATGAAAAGGGATAGCTCCGGCTATCAATTATGAAAAGGGATAGTGACGACCATCAAACAAT
1 ATCTATGAAAAGGGATAGCTCCGGCTATCAATTATGAAAAGGGATAGTGACGACCATCAAACAAT
80157700 AAAAAGAGATGGTGACGACCATCAAATTATGAAAAGGGATAGCTTCGGCTATCG
66 AAAAAGAGATGGTGACGACCATCAAATTATGAAAAGGGATAGCTTCGGCTATCG
*
80157754 AACTATGAAAAGGGATA
1 ATCTATGAAAAGGGATA
80157771 ATTTCGATTA
Statistics
Matches: 124, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
119 124 1.00
ACGTcount: A:0.38, C:0.14, G:0.25, T:0.22
Consensus pattern (119 bp):
ATCTATGAAAAGGGATAGCTCCGGCTATCAATTATGAAAAGGGATAGTGACGACCATCAAACAAT
AAAAAGAGATGGTGACGACCATCAAATTATGAAAAGGGATAGCTTCGGCTATCG
Found at i:80157761 original size:30 final size:31
Alignment explanation
Indices: 80157512--80157770 Score: 155
Period size: 30 Copynumber: 8.7 Consensus size: 31
80157502 AATGGCGATC
* * *
80157512 ATCAATCTATGAAAAGGGACAGCT-TCGGCT
1 ATCAAACTATGAAAAGGGATAGCTGTCGACT
* * *
80157542 ATC-AATTATGAAAAGGGAT-GGTGACGACT
1 ATCAAACTATGAAAAGGGATAGCTGTCGACT
* * *
80157571 ATCGAA-TAATGAAAAGGGAT-GGTGAT-GACC
1 ATCAAACT-ATGAAAAGGGATAGCTG-TCGACT
* * * *
80157601 ATCAAATTATGAAAAGGGATGGCT-TTGGCT
1 ATCAAACTATGAAAAGGGATAGCTGTCGACT
* * * *
80157631 ATCGATCTATGAAAAGGGATAGCT-CCGGCT
1 ATCAAACTATGAAAAGGGATAGCTGTCGACT
* * *
80157661 ATC-AATTATGAAAAGGGATAG-TGACGACC
1 ATCAAACTATGAAAAGGGATAGCTGTCGACT
* * * * * *
80157690 ATCAAACAATAAAAAGAGAT-GGTGACGACC
1 ATCAAACTATGAAAAGGGATAGCTGTCGACT
* *
80157720 ATCAAATTATGAAAAGGGATAGCT-TCGGCT
1 ATCAAACTATGAAAAGGGATAGCTGTCGACT
*
80157750 ATCGAACTATGAAAAGGGATA
1 ATCAAACTATGAAAAGGGATA
80157771 ATTTCGATTA
Statistics
Matches: 181, Mismatches: 37, Indels: 22
0.75 0.15 0.09
Matches are distributed among these distances:
28 3 0.02
29 45 0.25
30 128 0.71
31 5 0.03
ACGTcount: A:0.39, C:0.14, G:0.25, T:0.22
Consensus pattern (31 bp):
ATCAAACTATGAAAAGGGATAGCTGTCGACT
Found at i:80157787 original size:60 final size:60
Alignment explanation
Indices: 80157518--80157799 Score: 180
Period size: 60 Copynumber: 4.7 Consensus size: 60
80157508 GATCATCAAT
* * * * * *
80157518 CTATGAAAAGGGACAGCTT-CGGCTA-TCAATTATGAAAAGGGAT-GGTGACGACTATCGAA
1 CTATGAAAAGGGATAG-TTACGACTATTAAATTATGAAAAGGGATAGCT-TCGGCTATCGAA
* * * * * * * *
80157577 -TAATGAAAAGGGATGGTGATGACCATCAAATTATGAAAAGGGATGGCTTTGGCTATCGAT
1 CT-ATGAAAAGGGATAGTTACGACTATTAAATTATGAAAAGGGATAGCTTCGGCTATCGAA
* * * * * * * *
80157637 CTATGAAAAGGGATAGCTCCGGCTA-TCAATTATGAAAAGGGATAG-TGACGACCATCAAA
1 CTATGAAAAGGGATAGTTACGACTATTAAATTATGAAAAGGGATAGCT-TCGGCTATCGAA
* * * * * * *
80157696 CAATAAAAAGAGATGGTGACGACCATCAAATTATGAAAAGGGATAGCTTCGGCTATCGAA
1 CTATGAAAAGGGATAGTTACGACTATTAAATTATGAAAAGGGATAGCTTCGGCTATCGAA
* * * * *
80157756 CTATGAAAAGGGATAATTTCGATTATTAAATTACGAAAAAGGAT
1 CTATGAAAAGGGATAGTTACGACTATTAAATTATGAAAAGGGAT
80157800 GGGTCAACCA
Statistics
Matches: 159, Mismatches: 56, Indels: 15
0.69 0.24 0.07
Matches are distributed among these distances:
58 3 0.02
59 54 0.34
60 98 0.62
61 4 0.03
ACGTcount: A:0.39, C:0.13, G:0.24, T:0.23
Consensus pattern (60 bp):
CTATGAAAAGGGATAGTTACGACTATTAAATTATGAAAAGGGATAGCTTCGGCTATCGAA
Found at i:80157810 original size:119 final size:119
Alignment explanation
Indices: 80157518--80157811 Score: 304
Period size: 119 Copynumber: 2.5 Consensus size: 119
80157508 GATCATCAAT
* * * * * * * * * * * *
80157518 CTATGAAAAGGGACAGCTTCGGCTATCAATTATGAAAAGGGAT-GGTGACGACTATCGAATAATG
1 CTATGAAAAGGGATAACTCCGACTATAAATTACGAAAAAGGATAGG-GACAACCATCAAACAATA
* * * * *
80157582 AAAAGGGATGGTGATGACCATCAAATTATGAAAAGGGATGGCTTTGGCTATCGAT
65 AAAAGAGATGGTGACGACCATCAAATTATGAAAAGGGATAGCTTCGGCTATCGAA
* * * * * * *
80157637 CTATGAAAAGGGATAGCTCCGGCTATCAATTATGAAAAGGGATAGTGACGACCATCAAACAATAA
1 CTATGAAAAGGGATAACTCCGACTATAAATTACGAAAAAGGATAGGGACAACCATCAAACAATAA
80157702 AAAGAGATGGTGACGACCATCAAATTATGAAAAGGGATAGCTTCGGCTATCGAA
66 AAAGAGATGGTGACGACCATCAAATTATGAAAAGGGATAGCTTCGGCTATCGAA
* * * *
80157756 CTATGAAAAGGGATAATTTCGATTATTAAATTACGAAAAAGGAT-GGGTCAACCATC
1 CTATGAAAAGGGATAACTCCGACTA-TAAATTACGAAAAAGGATAGGGACAACCATC
80157812 GTATTATTAC
Statistics
Matches: 150, Mismatches: 23, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
119 134 0.89
120 16 0.11
ACGTcount: A:0.38, C:0.14, G:0.24, T:0.23
Consensus pattern (119 bp):
CTATGAAAAGGGATAACTCCGACTATAAATTACGAAAAAGGATAGGGACAACCATCAAACAATAA
AAAGAGATGGTGACGACCATCAAATTATGAAAAGGGATAGCTTCGGCTATCGAA
Found at i:80161239 original size:28 final size:28
Alignment explanation
Indices: 80161199--80161267 Score: 86
Period size: 28 Copynumber: 2.5 Consensus size: 28
80161189 GCAATCAAAT
*
80161199 ATGGCACTCAGTGTACGAA-ATATTGAGA
1 ATGGCACTTAGTGTAC-AAGATATTGAGA
*
80161227 ATGGCACTTAGTGTGCAAGATATTGAGA
1 ATGGCACTTAGTGTACAAGATATTGAGA
**
80161255 ATGAAACTTAGTG
1 ATGGCACTTAGTG
80161268 AAATATTGAA
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
27 2 0.06
28 34 0.94
ACGTcount: A:0.35, C:0.12, G:0.26, T:0.28
Consensus pattern (28 bp):
ATGGCACTTAGTGTACAAGATATTGAGA
Found at i:80161714 original size:21 final size:22
Alignment explanation
Indices: 80161683--80161723 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
80161673 GAATGTATTG
*
80161683 TGATGTATGTGGAAATGAAATA
1 TGATGTATGTGCAAATGAAATA
*
80161705 TGAT-TATGTGCCAATGAAA
1 TGATGTATGTGCAAATGAAA
80161724 CATAAATGAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.39, C:0.05, G:0.24, T:0.32
Consensus pattern (22 bp):
TGATGTATGTGCAAATGAAATA
Found at i:80168345 original size:30 final size:30
Alignment explanation
Indices: 80168311--80168371 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
80168301 TCCTTAACTC
80168311 AAACTTTAGAAAAATTACAATTTTGCCCCT
1 AAACTTTAGAAAAATTACAATTTTGCCCCT
* * * * *
80168341 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTAGAAAAATTACAATTTTGCCCCT
80168371 A
1 A
80168372 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.33, C:0.23, G:0.07, T:0.38
Consensus pattern (30 bp):
AAACTTTAGAAAAATTACAATTTTGCCCCT
Found at i:80170108 original size:13 final size:13
Alignment explanation
Indices: 80170090--80170115 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
80170080 AGCAATTTAT
80170090 TAAGTTCAAGTGG
1 TAAGTTCAAGTGG
80170103 TAAGTTCAAGTGG
1 TAAGTTCAAGTGG
80170116 GTTTAGAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.08, G:0.31, T:0.31
Consensus pattern (13 bp):
TAAGTTCAAGTGG
Found at i:80171455 original size:28 final size:28
Alignment explanation
Indices: 80171421--80171502 Score: 112
Period size: 28 Copynumber: 2.9 Consensus size: 28
80171411 GCAATCAAAT
* *
80171421 ATGGCACTCAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTGCGAAATATTGAGA
80171449 ATGGCACTTAGTGTGC-AAGATATTGAGA
1 ATGGCACTTAGTGTGCGAA-ATATTGAGA
**
80171477 ATGAAACTTAGTGTGCGAAATATTGA
1 ATGGCACTTAGTGTGCGAAATATTGA
80171503 ATGATTCAAA
Statistics
Matches: 48, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.04
28 44 0.92
29 2 0.04
ACGTcount: A:0.35, C:0.11, G:0.26, T:0.28
Consensus pattern (28 bp):
ATGGCACTTAGTGTGCGAAATATTGAGA
Found at i:80173153 original size:18 final size:17
Alignment explanation
Indices: 80173130--80173166 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 17
80173120 ATATATAATG
*
80173130 GAATATGATTTTAATTAT
1 GAATATGACTTTAA-TAT
80173148 GAATATGACTTTAATAT
1 GAATATGACTTTAATAT
80173165 GA
1 GA
80173167 TGGATATAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 5 0.28
18 13 0.72
ACGTcount: A:0.41, C:0.03, G:0.14, T:0.43
Consensus pattern (17 bp):
GAATATGACTTTAATAT
Found at i:80181363 original size:26 final size:26
Alignment explanation
Indices: 80181333--80181394 Score: 81
Period size: 26 Copynumber: 2.3 Consensus size: 26
80181323 GCACTCTCTC
80181333 GAGCCATGTAACA-AGAAGCTCACAAA
1 GAGCCAT-TAACAGAGAAGCTCACAAA
* *
80181359 GAGCCATTAATAGGGAAGCTCACAAA
1 GAGCCATTAACAGAGAAGCTCACAAA
80181385 GAGCCTATTA
1 GAGCC-ATTA
80181395 GGAAGCTTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
25 4 0.12
26 24 0.75
27 4 0.12
ACGTcount: A:0.42, C:0.21, G:0.21, T:0.16
Consensus pattern (26 bp):
GAGCCATTAACAGAGAAGCTCACAAA
Found at i:80184462 original size:20 final size:20
Alignment explanation
Indices: 80184410--80184463 Score: 67
Period size: 20 Copynumber: 2.7 Consensus size: 20
80184400 GTTGGTATTG
80184410 ATACCATTTTAAAATTATCA
1 ATACCATTTTAAAATTATCA
80184430 ATA--ATTTTATAAAATTATCA
1 ATACCA-TTT-TAAAATTATCA
*
80184450 ATACCCTTTTAAAA
1 ATACCATTTTAAAA
80184464 ATACCGATAC
Statistics
Matches: 29, Mismatches: 1, Indels: 8
0.76 0.03 0.21
Matches are distributed among these distances:
18 1 0.03
19 3 0.10
20 22 0.76
21 3 0.10
ACGTcount: A:0.46, C:0.13, G:0.00, T:0.41
Consensus pattern (20 bp):
ATACCATTTTAAAATTATCA
Found at i:80186090 original size:23 final size:22
Alignment explanation
Indices: 80186050--80186097 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 22
80186040 TATTTGTATA
*
80186050 TTTAATTTGATTTACTTTTACT
1 TTTAATTTAATTTACTTTTACT
* *
80186072 TTTAATTTTAATTTTCTTTTTCT
1 TTTAA-TTTAATTTACTTTTACT
80186095 TTT
1 TTT
80186098 TTGGACATAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
22 5 0.23
23 17 0.77
ACGTcount: A:0.19, C:0.08, G:0.02, T:0.71
Consensus pattern (22 bp):
TTTAATTTAATTTACTTTTACT
Found at i:80186883 original size:21 final size:22
Alignment explanation
Indices: 80186857--80186918 Score: 58
Period size: 21 Copynumber: 2.9 Consensus size: 22
80186847 TGTCCCTAGT
80186857 ACACACAGGCGTGTGCCTC-GG
1 ACACACAGGCGTGTGCCTCTGG
* **
80186878 ACACAC-GGTCGTATGCCTCTTTT
1 ACACACAGG-CGTGTGCCTC-TGG
80186901 A-ACACAGGCGTGTGCCTC
1 ACACACAGGCGTGTGCCTC
80186919 AGTCACTGTA
Statistics
Matches: 33, Mismatches: 4, Indels: 7
0.75 0.09 0.16
Matches are distributed among these distances:
20 2 0.06
21 15 0.45
22 13 0.39
23 3 0.09
ACGTcount: A:0.19, C:0.32, G:0.26, T:0.23
Consensus pattern (22 bp):
ACACACAGGCGTGTGCCTCTGG
Found at i:80197891 original size:8 final size:8
Alignment explanation
Indices: 80197870--80197899 Score: 51
Period size: 8 Copynumber: 3.6 Consensus size: 8
80197860 GGCTAGAGTT
80197870 TTCATTTCA
1 TTCATTT-A
80197879 TTCATTTA
1 TTCATTTA
80197887 TTCATTTA
1 TTCATTTA
80197895 TTCAT
1 TTCAT
80197900 ATTTAATTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 14 0.67
9 7 0.33
ACGTcount: A:0.23, C:0.17, G:0.00, T:0.60
Consensus pattern (8 bp):
TTCATTTA
Found at i:80207097 original size:15 final size:14
Alignment explanation
Indices: 80207071--80207102 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
80207061 GTATATTTTT
80207071 ATTTAATTTTTTAA
1 ATTTAATTTTTTAA
*
80207085 ATTTAATTTTTTTA
1 ATTTAATTTTTTAA
80207099 ATTT
1 ATTT
80207103 TTAAATGATG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (14 bp):
ATTTAATTTTTTAA
Found at i:80209529 original size:39 final size:39
Alignment explanation
Indices: 80209484--80209703 Score: 231
Period size: 39 Copynumber: 5.6 Consensus size: 39
80209474 GCTCCTCGTT
* *
80209484 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
80209524 C-AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
80209563 CAAATGCCTTC-GGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
80209601 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
* * *
80209640 CAAATGCCTTCGGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGG-GCTTAGCCCGGA-ATTAGT-ATC-TCGCA
*
80209681 C-AA-GCCTTCGGACTTAGCCCGGA
1 CAAATGCCTTCGGGCTTAGCCCGGA
80209704 CAGCATTCAA
Statistics
Matches: 161, Mismatches: 11, Indels: 18
0.85 0.06 0.09
Matches are distributed among these distances:
38 44 0.27
39 81 0.50
40 27 0.17
41 9 0.06
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
Found at i:80209601 original size:77 final size:79
Alignment explanation
Indices: 80209484--80209703 Score: 251
Period size: 77 Copynumber: 2.8 Consensus size: 79
80209474 GCTCCTCGTT
* * *
80209484 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCACAATGCCTTCGGGACTTAACCCG
1 CAAATGCCTTC-GGACTTAGCCCGGAAT-TAGTAATCTCGCACAATGCCTTCGGGACTTAGCCCG
*
80209547 GATTTAGTAACTCGCA
64 GAATTAGTAACTCGCA
80209563 CAAATGCCTTCGG-CTTAGCCCGGAATTAGT-ATCTCGCACAAATGCCTTCGGG-CTTAGCCCGG
1 CAAATGCCTTCGGACTTAGCCCGGAATTAGTAATCTCGCAC-AATGCCTTCGGGACTTAGCCCGG
*
80209625 AATTAGTATCTCGCA
65 AATTAGTAACTCGCA
* * *
80209640 CAAATGCCTTCGGATCTTAGTCCGGATATT-GTCA-CTTAGCACAA-GCCTTC-GGACTTAGCCC
1 CAAATGCCTTCGGA-CTTAGCCCGGA-ATTAGTAATC-TCGCACAATGCCTTCGGGACTTAGCCC
80209701 GGA
63 GGA
80209704 CAGCATTCAA
Statistics
Matches: 125, Mismatches: 7, Indels: 19
0.83 0.05 0.13
Matches are distributed among these distances:
76 2 0.02
77 56 0.45
78 32 0.26
79 26 0.21
80 9 0.07
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CAAATGCCTTCGGACTTAGCCCGGAATTAGTAATCTCGCACAATGCCTTCGGGACTTAGCCCGGA
ATTAGTAACTCGCA
Found at i:80209697 original size:117 final size:117
Alignment explanation
Indices: 80209484--80209703 Score: 274
Period size: 117 Copynumber: 1.9 Consensus size: 117
80209474 GCTCCTCGTT
*
80209484 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATTCGCACAATGCCTTCGGGACTTAACCCGGA
1 CAAATGCCTTCGGGACATAGCCCGGATATAGTAATTCGCACAATGCCTTCGGGACTTAACCCGGA
*
80209549 TTTAGTAACTCGCACAAATGCCTTCGGCTTAGCCCGGAATTAGTATCTCGCA
66 TTTAGTAACTAGCACAAATGCCTTCGGCTTAGCCCGGAATTAGTATCTCGCA
* **
80209601 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGT-ATCTCGCACAAATGCCTTC-GGATCTTAGTC
1 CAAATGCCTTCGGGACATAGCCCGGATA-TAGTAAT-TCGCAC-AATGCCTTCGGGA-CTTAACC
*
80209662 CGGATATT-GTCACTTAGCAC-AA-GCCTTCGGACTTAGCCCGGA
62 CGGAT-TTAGTAAC-TAGCACAAATGCCTTCGG-CTTAGCCCGGA
80209704 CAGCATTCAA
Statistics
Matches: 90, Mismatches: 6, Indels: 14
0.82 0.05 0.13
Matches are distributed among these distances:
115 3 0.03
116 30 0.33
117 50 0.56
118 7 0.08
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (117 bp):
CAAATGCCTTCGGGACATAGCCCGGATATAGTAATTCGCACAATGCCTTCGGGACTTAACCCGGA
TTTAGTAACTAGCACAAATGCCTTCGGCTTAGCCCGGAATTAGTATCTCGCA
Found at i:80217584 original size:38 final size:39
Alignment explanation
Indices: 80217402--80217610 Score: 307
Period size: 39 Copynumber: 5.3 Consensus size: 39
80217392 GCTCCTCGTT
* * *
80217402 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGTA
1 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
80217442 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
80217482 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
80217521 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
80217560 CAAATGCCTTC-GGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
80217598 CAAATGCCTTCGG
1 CAAATGCCTTCGG
80217611 ATCTTAGTCC
Statistics
Matches: 159, Mismatches: 7, Indels: 7
0.92 0.04 0.04
Matches are distributed among these distances:
38 38 0.24
39 74 0.47
40 45 0.28
41 2 0.01
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
Found at i:80217617 original size:78 final size:78
Alignment explanation
Indices: 80217402--80217661 Score: 309
Period size: 78 Copynumber: 3.3 Consensus size: 78
80217392 GCTCCTCGTT
* * * *
80217402 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGTACAAATGCCTTCGGGACTTAACCC
1 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGT-ATCTCGCACAAATGCCTTC-GGACTTAGCCC
*
80217465 GGATTTAGTAACTCGCA
62 GGAATTAGTAACTCGCA
*
80217482 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGGCTTAGCCCGGAA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGACTTAGCCCGGAA
*
80217547 TTAGTATCTCGCA
66 TTAGTAACTCGCA
*
80217560 CAAATGCCTTC-GGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG-
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGA-CTTAGCCCGGA
* *
80217623 A-TATGTCACTTAGCA
65 ATTA-GTAAC-TCGCA
80217638 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGG-CTTAGCCCGGA
80217662 CATCATTCAA
Statistics
Matches: 161, Mismatches: 12, Indels: 16
0.85 0.06 0.08
Matches are distributed among these distances:
76 8 0.05
77 48 0.30
78 62 0.39
79 28 0.17
80 15 0.09
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (78 bp):
CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGACTTAGCCCGGAA
TTAGTAACTCGCA
Found at i:80221665 original size:22 final size:22
Alignment explanation
Indices: 80221640--80221682 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
80221630 AAGCTTTTAG
80221640 AAAAGAATTCTATTATATCTAC
1 AAAAGAATTCTATTATATCTAC
80221662 AAAAGAATTCTATTATATCTA
1 AAAAGAATTCTATTATATCTA
80221683 AGGACATAAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.47, C:0.12, G:0.05, T:0.37
Consensus pattern (22 bp):
AAAAGAATTCTATTATATCTAC
Found at i:80225792 original size:16 final size:15
Alignment explanation
Indices: 80225768--80225802 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
80225758 GTGACAGTAT
80225768 TATTCTAATATTTTGA
1 TATTCTAATATTTT-A
*
80225784 TATTTTAATATTTTA
1 TATTCTAATATTTTA
80225799 TATT
1 TATT
80225803 ATTCACATCA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 5 0.28
16 13 0.72
ACGTcount: A:0.31, C:0.03, G:0.03, T:0.63
Consensus pattern (15 bp):
TATTCTAATATTTTA
Found at i:80229640 original size:29 final size:29
Alignment explanation
Indices: 80229577--80229644 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
80229567 TAATCAACCG
80229577 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
80229606 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
80229635 CGCACACTTA
1 CGCACACTTA
80229645 CCTTTTCCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:80229785 original size:29 final size:30
Alignment explanation
Indices: 80229746--80229824 Score: 110
Period size: 29 Copynumber: 2.7 Consensus size: 30
80229736 CTTAATAATC
80229746 AACCACGCACACTTAGTGCCATGTAC-TTTA
1 AACC-CGCACACTTAGTGCCATGTACATTTA
*
80229776 AACTCGCACACTTAGTG-C-TGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATTTA
80229805 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
80229825 ATCTCATGAC
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 33 0.77
30 4 0.09
ACGTcount: A:0.30, C:0.30, G:0.14, T:0.25
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATTTA
Found at i:80229818 original size:174 final size:174
Alignment explanation
Indices: 80229292--80229793 Score: 923
Period size: 174 Copynumber: 2.9 Consensus size: 174
80229282 AACTCAAGGT
* *
80229292 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
*
80229357 GAAAATATATATTGAGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
*
80229422 ACTCTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
80229466 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
* *
80229531 GAAAATATATATTGGGTTCGCACACATAGTGCTCAATAATCAACCGCGCACACTTAGTGCCATGC
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
80229596 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
*
80229640 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCTTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
*
80229705 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
*
80229770 ACTTTAAACTCGCACACTTAGTGC
131 ACTTTAAACTCACACACTTAGTGC
80229794 TGTACAATTT
Statistics
Matches: 317, Mismatches: 11, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
174 317 1.00
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.30
Consensus pattern (174 bp):
ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
Found at i:80239849 original size:25 final size:26
Alignment explanation
Indices: 80239812--80239869 Score: 91
Period size: 25 Copynumber: 2.3 Consensus size: 26
80239802 CTCATACAAG
* *
80239812 CATATAATCGGGAAGCTCTTTTGAGC
1 CATATAATCGGGAAGCTCATGTGAGC
80239838 CATATAAT-GGGAAGCTCATGTGAGC
1 CATATAATCGGGAAGCTCATGTGAGC
80239863 CATATAA
1 CATATAA
80239870 CGTGAAACCT
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
25 22 0.73
26 8 0.27
ACGTcount: A:0.33, C:0.17, G:0.22, T:0.28
Consensus pattern (26 bp):
CATATAATCGGGAAGCTCATGTGAGC
Found at i:80241671 original size:27 final size:27
Alignment explanation
Indices: 80241641--80241755 Score: 106
Period size: 27 Copynumber: 4.3 Consensus size: 27
80241631 GCAACCAAAA
*
80241641 TAGTCTACCGGGATAGTAAACATGGGT
1 TAGTCCACCGGGATAGTAAACATGGGT
** * *
80241668 TAGTCCGTCGGGATATTAAACATGGAT
1 TAGTCCACCGGGATAGTAAACATGGGT
* ** *
80241695 TAGCCCGTCGAGATAGTAAAC-TCGGGT
1 TAGTCCACCGGGATAGTAAACAT-GGGT
* * *
80241722 TAGTTCACTGGGATAGTAAACACGGGT
1 TAGTCCACCGGGATAGTAAACATGGGT
80241749 TAGTCCA
1 TAGTCCA
80241756 TCAGGACATT
Statistics
Matches: 69, Mismatches: 17, Indels: 4
0.77 0.19 0.04
Matches are distributed among these distances:
26 1 0.01
27 68 0.99
ACGTcount: A:0.29, C:0.17, G:0.28, T:0.26
Consensus pattern (27 bp):
TAGTCCACCGGGATAGTAAACATGGGT
Found at i:80241777 original size:54 final size:54
Alignment explanation
Indices: 80241719--80241863 Score: 132
Period size: 54 Copynumber: 2.7 Consensus size: 54
80241709 AGTAAACTCG
*
80241719 GGTTAGTTCACTGGGATAGTAAACACGGGTTAGTCCATCAG-GACATTAAACATA
1 GGTTAGTTCACTGGGATAGTAAACACGGGTTAGTCCAT-AGAGACATTAAACACA
* * * * ** * ** *
80241773 GGTTA-CTCTGCTAGGACAGTAAACACGAATTAGACTGTTGAGACATTAAACACA
1 GGTTAGTTC-ACTGGGATAGTAAACACGGGTTAGTCCATAGAGACATTAAACACA
* * *
80241827 GGTTAGTCCATTGGGATAGTAAACACGGGGTAGTCCA
1 GGTTAGTTCACTGGGATAGTAAACACGGGTTAGTCCA
80241864 CTGGGACAGT
Statistics
Matches: 65, Mismatches: 23, Indels: 6
0.69 0.24 0.06
Matches are distributed among these distances:
53 3 0.05
54 61 0.94
55 1 0.02
ACGTcount: A:0.33, C:0.17, G:0.25, T:0.25
Consensus pattern (54 bp):
GGTTAGTTCACTGGGATAGTAAACACGGGTTAGTCCATAGAGACATTAAACACA
Found at i:80241849 original size:27 final size:27
Alignment explanation
Indices: 80241819--80241888 Score: 86
Period size: 27 Copynumber: 2.6 Consensus size: 27
80241809 GTTGAGACAT
*
80241819 TAAACACAGGTTAGTCCATTGGGATAG
1 TAAACACGGGTTAGTCCATTGGGATAG
* * *
80241846 TAAACACGGGGTAGTCCACTGGGACAG
1 TAAACACGGGTTAGTCCATTGGGATAG
* *
80241873 TAAATACGGGGTAGTC
1 TAAACACGGGTTAGTC
80241889 AGCCAGGATG
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 38 1.00
ACGTcount: A:0.31, C:0.17, G:0.30, T:0.21
Consensus pattern (27 bp):
TAAACACGGGTTAGTCCATTGGGATAG
Found at i:80242656 original size:31 final size:32
Alignment explanation
Indices: 80242607--80242670 Score: 87
Period size: 31 Copynumber: 2.0 Consensus size: 32
80242597 ATATTAAATA
*
80242607 AGATATTTATTAATTAAATA-ATTATATTATG
1 AGATATTTATTAATTAAATATATTAAATTATG
*
80242638 AGATTTTTATGTAA-TAAATATATTAAATTATG
1 AGATATTTAT-TAATTAAATATATTAAATTATG
80242670 A
1 A
80242671 CAAATGTATG
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
31 15 0.52
32 14 0.48
ACGTcount: A:0.45, C:0.00, G:0.08, T:0.47
Consensus pattern (32 bp):
AGATATTTATTAATTAAATATATTAAATTATG
Found at i:80243591 original size:15 final size:15
Alignment explanation
Indices: 80243571--80243627 Score: 98
Period size: 15 Copynumber: 3.9 Consensus size: 15
80243561 CGATGAATTT
80243571 ATTGAATTTATATTG
1 ATTGAATTTATATTG
*
80243586 ATTGAATTTATTTTG
1 ATTGAATTTATATTG
80243601 ATTGAATTTATATTG
1 ATTGAATTTATATTG
80243616 ATTGAA-TTATAT
1 ATTGAATTTATAT
80243628 AATATATATG
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
14 6 0.15
15 34 0.85
ACGTcount: A:0.33, C:0.00, G:0.12, T:0.54
Consensus pattern (15 bp):
ATTGAATTTATATTG
Found at i:80247432 original size:30 final size:29
Alignment explanation
Indices: 80247396--80247474 Score: 79
Period size: 30 Copynumber: 2.6 Consensus size: 29
80247386 TAATTAAGAT
80247396 AATAAAATAAGAAAATATG-AAATGTAATAA
1 AATAAAATAAGAAAATATGAAAATGT-A-AA
* *
80247426 AATAAAATAAAAATAGATTTGAAAATGTAAA
1 AATAAAATAAGAA-A-ATATGAAAATGTAAA
*
80247457 AATAAATTTAAGAAAATA
1 AATAAA-ATAAGAAAATA
80247475 AAAAAATTGG
Statistics
Matches: 40, Mismatches: 5, Indels: 8
0.75 0.09 0.15
Matches are distributed among these distances:
30 14 0.35
31 10 0.25
32 10 0.25
33 6 0.15
ACGTcount: A:0.66, C:0.00, G:0.09, T:0.25
Consensus pattern (29 bp):
AATAAAATAAGAAAATATGAAAATGTAAA
Found at i:80247476 original size:20 final size:18
Alignment explanation
Indices: 80247429--80247478 Score: 55
Period size: 20 Copynumber: 2.6 Consensus size: 18
80247419 GTAATAAAAT
*
80247429 AAAATAAAAATAGATTTG
1 AAAATAAAAATAAATTTG
80247447 AAAATGTAAAAATAAATTTAAG
1 AAAA--TAAAAATAAATTT--G
80247469 AAAATAAAAA
1 AAAATAAAAA
80247479 AATTGGTAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
18 4 0.15
20 18 0.67
22 5 0.19
ACGTcount: A:0.68, C:0.00, G:0.08, T:0.24
Consensus pattern (18 bp):
AAAATAAAAATAAATTTG
Found at i:80248273 original size:23 final size:23
Alignment explanation
Indices: 80248247--80248293 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
80248237 ATTTATTAAA
80248247 TGCCAAAGACAAAGTGTTAGAAT
1 TGCCAAAGACAAAGTGTTAGAAT
80248270 TGCCAAAGACAAAGTGTTAGAAT
1 TGCCAAAGACAAAGTGTTAGAAT
80248293 T
1 T
80248294 AAGTGACCCG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.43, C:0.13, G:0.21, T:0.23
Consensus pattern (23 bp):
TGCCAAAGACAAAGTGTTAGAAT
Found at i:80248606 original size:6 final size:6
Alignment explanation
Indices: 80248595--80248626 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
80248585 AAATTTGTGT
80248595 TTTTTA TTTTTA TTTTTA -TTTTA -TTTTA TTTT
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTT
80248627 CACAAATTGG
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 10 0.40
6 15 0.60
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (6 bp):
TTTTTA
Found at i:80253063 original size:5 final size:5
Alignment explanation
Indices: 80253053--80253081 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
80253043 AATCTGTGTT
80253053 TTTTA TTTTA TTTTA TTTTA TTTTA TTTT
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTT
80253082 CACACAAAGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (5 bp):
TTTTA
Found at i:80254903 original size:30 final size:30
Alignment explanation
Indices: 80254860--80254916 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
80254850 TTTTTAGTTA
*
80254860 AATTTGATCATCAA-TATTTTAAAAAGAGTC
1 AATTTGATCATCAACT-TTTCAAAAAGAGTC
80254890 AATTTGAAT-ATCAACTTTTCAAAAAGA
1 AATTTG-ATCATCAACTTTTCAAAAAGA
80254917 AATATTATGC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
30 21 0.88
31 3 0.12
ACGTcount: A:0.46, C:0.11, G:0.09, T:0.35
Consensus pattern (30 bp):
AATTTGATCATCAACTTTTCAAAAAGAGTC
Found at i:80261763 original size:12 final size:13
Alignment explanation
Indices: 80261739--80261768 Score: 53
Period size: 12 Copynumber: 2.4 Consensus size: 13
80261729 ATTATGTCTG
80261739 AATATATATAAAA
1 AATATATATAAAA
80261752 AATATA-ATAAAA
1 AATATATATAAAA
80261764 AATAT
1 AATAT
80261769 TGTTAGAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 11 0.65
13 6 0.35
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (13 bp):
AATATATATAAAA
Found at i:80270226 original size:40 final size:40
Alignment explanation
Indices: 80270171--80270391 Score: 331
Period size: 40 Copynumber: 5.6 Consensus size: 40
80270161 TATTCGAATG
*
80270171 ATATCCGGGCTAAGTCCCAAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
80270211 ATATCCGGGCTAAGTCCTGAAGTCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
80270251 ATATCCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
80270291 ATATCCGGGCCAAGTCCCGAAGGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
80270331 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
*
80270371 ATATCC-GGCTAAAT-CCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
80270392 TACTTGGGTT
Statistics
Matches: 165, Mismatches: 15, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
38 7 0.04
39 6 0.04
40 150 0.91
41 2 0.01
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:80278341 original size:40 final size:40
Alignment explanation
Indices: 80278286--80278505 Score: 358
Period size: 40 Copynumber: 5.6 Consensus size: 40
80278276 TATTCGAATG
80278286 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
80278326 ATATCCGGGCTAAGT-CCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
80278365 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
80278405 ATATCCGGGCCAAGTCCCGAAGGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
80278445 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
*
80278485 ATATCC-GGCTAAAT-CCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
80278506 TACTTGGGTT
Statistics
Matches: 170, Mismatches: 8, Indels: 6
0.92 0.04 0.03
Matches are distributed among these distances:
38 7 0.04
39 45 0.26
40 116 0.68
41 2 0.01
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:80285247 original size:42 final size:43
Alignment explanation
Indices: 80285181--80285270 Score: 103
Period size: 42 Copynumber: 2.1 Consensus size: 43
80285171 AATTAGGTAC
* ** *
80285181 AAGACCATGTCTGGGACATCGGCA-TCATATCT-AATTTCATGT
1 AAGACCATGTCTCGGACAGAGGCATTCATAT-TGAATTACATGT
* *
80285223 AAGACCTTGTCTCGGACAGAGGCATTGATATTGAATTACATGT
1 AAGACCATGTCTCGGACAGAGGCATTCATATTGAATTACATGT
80285266 AAGAC
1 AAGAC
80285271 TACGTCCGAG
Statistics
Matches: 40, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
42 21 0.52
43 19 0.47
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (43 bp):
AAGACCATGTCTCGGACAGAGGCATTCATATTGAATTACATGT
Found at i:80293624 original size:47 final size:45
Alignment explanation
Indices: 80293525--80293746 Score: 162
Period size: 47 Copynumber: 4.7 Consensus size: 45
80293515 ATATTATGAG
* * * * *
80293525 AGCCAGTGTAAGACCATGTCTAGGACATGGCATCAGC-ACAGAGATGAG
1 AGCCAGTGTAAGA-CATGTTTGGGACAT-GCATCGGCTA-ACAGAT-AT
* *
80293573 AGCCAGAGTAAGACATGTTTGGGACATGTATCGGCCTCAACAGATAT
1 AGCCAGTGTAAGACATGTTTGGGACATGCATCGG-CT-AACAGATAT
* * * *
80293620 AGCCAGTGTAAGACGTGTTTGGGACACGCATCGGCTAAGAGTTAT
1 AGCCAGTGTAAGACATGTTTGGGACATGCATCGGCTAACAGATAT
* * * * *
80293665 -GCTAGTGTAAGACATGTCTGGGACATGCATCAGC-ATGCATATAT
1 AGCCAGTGTAAGACATGTTTGGGACATGCATCGGCTA-ACAGATAT
*
80293709 GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCG
1 ---AGCCAGTGTAAGA-CATGTTTGGGACAT-GCATCG
80293747 ACAATATATA
Statistics
Matches: 140, Mismatches: 24, Indels: 18
0.77 0.13 0.10
Matches are distributed among these distances:
43 1 0.01
44 33 0.24
45 7 0.05
46 7 0.05
47 44 0.31
48 28 0.20
49 15 0.11
50 5 0.04
ACGTcount: A:0.30, C:0.19, G:0.29, T:0.22
Consensus pattern (45 bp):
AGCCAGTGTAAGACATGTTTGGGACATGCATCGGCTAACAGATAT
Found at i:80300585 original size:52 final size:52
Alignment explanation
Indices: 80300523--80300627 Score: 201
Period size: 52 Copynumber: 2.0 Consensus size: 52
80300513 ATATTTATTC
80300523 ATCATGATAAACCTACTTTCAATTTACTCAATTATACCATAGCTTTGATCAT
1 ATCATGATAAACCTACTTTCAATTTACTCAATTATACCATAGCTTTGATCAT
*
80300575 ATCATGATAAACCTACTTTCAATTTACTCAATTATACCATAGCTTTGGTCAT
1 ATCATGATAAACCTACTTTCAATTTACTCAATTATACCATAGCTTTGATCAT
80300627 A
1 A
80300628 CTTATTAGCC
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 52 1.00
ACGTcount: A:0.34, C:0.21, G:0.07, T:0.38
Consensus pattern (52 bp):
ATCATGATAAACCTACTTTCAATTTACTCAATTATACCATAGCTTTGATCAT
Found at i:80302921 original size:39 final size:40
Alignment explanation
Indices: 80302826--80303086 Score: 319
Period size: 39 Copynumber: 6.7 Consensus size: 40
80302816 TTGAATGATG
*
80302826 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
80302864 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
80302905 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
80302944 TCCGGGCTAAG-CCCGAAGGCATTTGTG-GAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
80302982 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
80303021 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* * *
80303060 AACCGGGCTATGTCCTGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
80303087 AACGAGGAGC
Statistics
Matches: 200, Mismatches: 12, Indels: 19
0.87 0.05 0.08
Matches are distributed among these distances:
38 38 0.19
39 92 0.46
40 58 0.29
41 11 0.05
42 1 0.00
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:80302994 original size:77 final size:79
Alignment explanation
Indices: 80302826--80303086 Score: 313
Period size: 77 Copynumber: 3.3 Consensus size: 79
80302816 TTGAATGATG
* * *
80302826 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AATATCCGGACTAAGATCCGAAGGCA
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGA-T-ACTAAT-TCCGGGCTAAGACCCGAAGGCA
80302887 TTTGTGCGAGATACTAAT
62 TTTGTGCGAGATACTAAT
80302905 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAG-CCCGAAGGCATTTG
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGACCCGAAGGCATTTG
80302969 TG-GAGATACTAAT
66 TGCGAGATACTAAT
* * * *
80302982 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTG
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGACCCGAAGGCATTTG
80303047 TGCGA-ATTACT-AT
66 TGCGAGA-TACTAAT
* * *
80303060 AACCGGGCTATGTCCTGAAGGCATTTG
1 -TCCGGGCTAAG-CCCGAAGGCATTTG
80303087 AACGAGGAGC
Statistics
Matches: 164, Mismatches: 9, Indels: 17
0.86 0.05 0.09
Matches are distributed among these distances:
77 58 0.35
78 43 0.26
79 38 0.23
80 24 0.15
81 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (79 bp):
TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGACCCGAAGGCATTTG
TGCGAGATACTAAT
Found at i:80310878 original size:75 final size:79
Alignment explanation
Indices: 80310794--80310996 Score: 264
Period size: 74 Copynumber: 2.7 Consensus size: 79
80310784 CGGACAAGAT
80310794 CCGAAGGCATTTGTGCGAGATACTAATT-C-GGCTAAGCCCGAAGGCA-TTGTGCGAGATACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAA
*
80310856 TTCCGGGCTAAG-C
66 ATCCGGGCTAAGTC
*
80310869 CCGAAGGCA-TT-TGC--GATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAA
*
80310930 ATCCGGGTTAAGTC
66 ATCCGGGCTAAGTC
* *
80310944 CCGAAGGCATTTGTGCGA-ATTACT-ATAACCGGGCTATGTCCCGAAGGCATTTG
1 CCGAAGGCATTTGTGCGAGA-TACTAAT-TCCGGGCTAAG-CCCGAAGGCATTTG
80310997 AACGGAGCTA
Statistics
Matches: 112, Mismatches: 5, Indels: 17
0.84 0.04 0.13
Matches are distributed among these distances:
71 10 0.09
72 1 0.01
73 20 0.18
74 27 0.24
75 19 0.17
76 2 0.02
77 3 0.03
78 3 0.03
79 13 0.12
80 14 0.12
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAA
ATCCGGGCTAAGTC
Found at i:80310954 original size:40 final size:39
Alignment explanation
Indices: 80310794--80310996 Score: 253
Period size: 40 Copynumber: 5.3 Consensus size: 39
80310784 CGGACAAGAT
*
80310794 CCGAAGGCATTTGTGCGAGATACT-AATTC-GGCTAAGC
1 CCGAAGGCATTTGTGCGAGATACTAAATCCGGGCTAAGC
*
80310831 CCGAAGGCA-TTGTGCGAGATACTAATTCCGGGCTAAGC
1 CCGAAGGCATTTGTGCGAGATACTAAATCCGGGCTAAGC
*
80310869 CCGAAGGCA-TT-TGC--GATACTAATTCCGGGCTAAGC
1 CCGAAGGCATTTGTGCGAGATACTAAATCCGGGCTAAGC
* *
80310904 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGATACTAAATCCGGGCTAAG-C
*
80310944 CCGAAGGCATTTGTGCGA-ATTACTATAA-CCGGGCTATGTC
1 CCGAAGGCATTTGTGCGAGA-TACTA-AATCCGGGCTAAG-C
80310984 CCGAAGGCATTTG
1 CCGAAGGCATTTG
80310997 AACGGAGCTA
Statistics
Matches: 149, Mismatches: 8, Indels: 15
0.87 0.05 0.09
Matches are distributed among these distances:
35 30 0.20
36 16 0.11
37 18 0.12
38 19 0.13
39 17 0.11
40 47 0.32
41 2 0.01
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.25
Consensus pattern (39 bp):
CCGAAGGCATTTGTGCGAGATACTAAATCCGGGCTAAGC
Found at i:80315951 original size:38 final size:40
Alignment explanation
Indices: 80315872--80315960 Score: 128
Period size: 38 Copynumber: 2.3 Consensus size: 40
80315862 GCTCCTCGTT
* * *
80315872 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATATAGTAACTCGCA
*
80315912 CAAATGCCTTCGGGACTTAACCC-GAT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATATAGTAACTCGCA
80315950 CAAATGCCTTC
1 CAAATGCCTTC
80315961 AGCCGGTGAC
Statistics
Matches: 45, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
38 22 0.49
39 2 0.04
40 21 0.47
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATATAGTAACTCGCA
Found at i:80316038 original size:39 final size:39
Alignment explanation
Indices: 80315970--80316114 Score: 162
Period size: 39 Copynumber: 3.8 Consensus size: 39
80315960 CAGCCGGTGA
80315970 CTCGCAC-AATGCC-TCGGGCTT--CCCGGAATTAGTAT
1 CTCGCACAAATGCCTTCGGGCTTAGCCCGGAATTAGTAT
80316005 CTCGCACAAATGCCTTCGGGCTTAGCCCGGAATTAGTAT
1 CTCGCACAAATGCCTTCGGGCTTAGCCCGGAATTAGTAT
* *
80316044 CTCGCACAAATGCCTTCGGATCTTAGTCCGG-A-TATGTCA-
1 CTCGCACAAATGCCTTCGG-GCTTAGCCCGGAATTA-GT-AT
*
80316083 CTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 C-TCGCACAAATGCCTTCGGG-CTTAGCCCGGA
80316115 CATCATTCAA
Statistics
Matches: 95, Mismatches: 5, Indels: 15
0.83 0.04 0.13
Matches are distributed among these distances:
35 7 0.07
36 6 0.06
37 8 0.08
38 2 0.02
39 54 0.57
40 18 0.19
ACGTcount: A:0.23, C:0.30, G:0.23, T:0.25
Consensus pattern (39 bp):
CTCGCACAAATGCCTTCGGGCTTAGCCCGGAATTAGTAT
Found at i:80323877 original size:40 final size:40
Alignment explanation
Indices: 80323833--80324092 Score: 319
Period size: 39 Copynumber: 6.7 Consensus size: 40
80323823 GCTCCTCGTT
* *
80323833 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
80323873 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
80323913 CAAATGCCTTC-GG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
80323951 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
80323990 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
80324029 CAAATGCCTTC-GGATCTTAGTCCGG-A-TATGTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAATTA-GT-ATC-TCGCA
80324069 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
80324093 CATCATTCAA
Statistics
Matches: 201, Mismatches: 9, Indels: 21
0.87 0.04 0.09
Matches are distributed among these distances:
38 52 0.26
39 89 0.44
40 58 0.29
41 2 0.01
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:80333073 original size:32 final size:35
Alignment explanation
Indices: 80332998--80333063 Score: 93
Period size: 32 Copynumber: 1.9 Consensus size: 35
80332988 ACCAATTCTA
*
80332998 TATATAACATATACCAAATCATATCATTTCATAAGT
1 TATA-AACATATACCAAAACATATCATTTCATAAGT
80333034 TATAAACATA-A-CAAAACATAT-ATTTCATAA
1 TATAAACATATACCAAAACATATCATTTCATAA
80333064 TCTCAAAACA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
32 9 0.31
33 9 0.31
34 1 0.03
35 6 0.21
36 4 0.14
ACGTcount: A:0.50, C:0.15, G:0.02, T:0.33
Consensus pattern (35 bp):
TATAAACATATACCAAAACATATCATTTCATAAGT
Found at i:80334241 original size:27 final size:27
Alignment explanation
Indices: 80334203--80334370 Score: 169
Period size: 27 Copynumber: 6.2 Consensus size: 27
80334193 TAAGTTGTAG
* * *
80334203 AATTACTAAAATACCCTTGGTTTATAA
1 AATTACCAAAATACCCTCGATTTATAA
*
80334230 AATTACCAAAATACCC-CTGGTTTATAA
1 AATTACCAAAATACCCTC-GATTTATAA
* *
80334257 AATTACCAAAAAACCC-CTGATTTGTAA
1 AATTACCAAAATACCCTC-GATTTATAA
* **
80334284 AATTACTAAAATACCCTCGACCTATAA
1 AATTACCAAAATACCCTCGATTTATAA
** *
80334311 AATTACTGAAATACCCTCGACTTATAA
1 AATTACCAAAATACCCTCGATTTATAA
* * *
80334338 GATTACCAAAGTACCCTCGATTTACAA
1 AATTACCAAAATACCCTCGATTTATAA
80334365 AATTAC
1 AATTAC
80334371 TGTTTTACCC
Statistics
Matches: 120, Mismatches: 19, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
27 119 0.99
28 1 0.01
ACGTcount: A:0.42, C:0.22, G:0.07, T:0.29
Consensus pattern (27 bp):
AATTACCAAAATACCCTCGATTTATAA
Found at i:80334360 original size:81 final size:81
Alignment explanation
Indices: 80334197--80334347 Score: 196
Period size: 81 Copynumber: 1.9 Consensus size: 81
80334187 AGTGGATAAG
* * *** **
80334197 TTGTAGAATTACTAAAATACCCTTGGTTTATAAAATTACCAAAATACCCCTGGTTTATAAAATTA
1 TTGTAAAATTACTAAAATACCCTCGACCTATAAAATTACCAAAATACCCCTGACTTATAAAATTA
80334262 CCAAAAAACCCCTGAT
66 CCAAAAAACCCCTGAT
** *
80334278 TTGTAAAATTACTAAAATACCCTCGACCTATAAAATTACTGAAATA-CCCTCGACTTATAAGATT
1 TTGTAAAATTACTAAAATACCCTCGACCTATAAAATTACCAAAATACCCCT-GACTTATAAAATT
80334342 ACCAAA
65 ACCAAA
80334348 GTACCCTCGA
Statistics
Matches: 59, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
80 4 0.07
81 55 0.93
ACGTcount: A:0.42, C:0.21, G:0.08, T:0.30
Consensus pattern (81 bp):
TTGTAAAATTACTAAAATACCCTCGACCTATAAAATTACCAAAATACCCCTGACTTATAAAATTA
CCAAAAAACCCCTGAT
Found at i:80334367 original size:81 final size:81
Alignment explanation
Indices: 80334203--80334371 Score: 189
Period size: 81 Copynumber: 2.1 Consensus size: 81
80334193 TAAGTTGTAG
* *** **
80334203 AATTACTAAAATACCCTTGGTTTATAAAATTACCAAAATACCCCTGGTTTATAAAATTACCAAAA
1 AATTACTAAAATACCCTCGACCTATAAAATTACCAAAATACCCCTGACTTATAAAATTACCAAAA
**
80334268 AACCCCTGATTTGTAA
66 AACCCCTGATTTACAA
** *
80334284 AATTACTAAAATACCCTCGACCTATAAAATTACTGAAATA-CCCTCGACTTATAAGATTACCAAA
1 AATTACTAAAATACCCTCGACCTATAAAATTACCAAAATACCCCT-GACTTATAAAATTACCAAA
**
80334348 GTA-CCCTCGATTTACAA
65 AAACCCCT-GATTTACAA
80334365 AATTACT
1 AATTACT
80334372 GTTTTACCCT
Statistics
Matches: 73, Mismatches: 13, Indels: 4
0.81 0.14 0.04
Matches are distributed among these distances:
80 8 0.11
81 65 0.89
ACGTcount: A:0.41, C:0.22, G:0.07, T:0.30
Consensus pattern (81 bp):
AATTACTAAAATACCCTCGACCTATAAAATTACCAAAATACCCCTGACTTATAAAATTACCAAAA
AACCCCTGATTTACAA
Found at i:80334406 original size:27 final size:28
Alignment explanation
Indices: 80334282--80334408 Score: 120
Period size: 27 Copynumber: 4.7 Consensus size: 28
80334272 CCTGATTTGT
* *
80334282 AAAATTACTA-AAATACCCTCGACCTAT
1 AAAATTACTAGAAATACCCTCGACTTAC
*
80334309 AAAATTACT-GAAATACCCTCGACTTAT
1 AAAATTACTAGAAATACCCTCGACTTAC
* * * *
80334336 AAGATTACCA-AAGTACCCTCGATTTAC
1 AAAATTACTAGAAATACCCTCGACTTAC
*** *
80334363 AAAATTACT-GTTTTACCCTCGATTTAC
1 AAAATTACTAGAAATACCCTCGACTTAC
80334390 AAAATTA-TAGAAATACCCT
1 AAAATTACTAGAAATACCCT
80334409 TGTAAGGTAG
Statistics
Matches: 82, Mismatches: 14, Indels: 8
0.79 0.13 0.08
Matches are distributed among these distances:
26 1 0.01
27 81 0.99
ACGTcount: A:0.40, C:0.23, G:0.07, T:0.30
Consensus pattern (28 bp):
AAAATTACTAGAAATACCCTCGACTTAC
Found at i:80334407 original size:54 final size:54
Alignment explanation
Indices: 80334282--80334408 Score: 139
Period size: 54 Copynumber: 2.4 Consensus size: 54
80334272 CCTGATTTGT
* *
80334282 AAAATTACTAAAATACCCTCGACCTATAAAATTACTGAAATACCCTCGACTTAT
1 AAAATTACTAAAATACCCTCGACCTACAAAATTACTGAAATACCCTCGACTTAC
* * * ** *** *
80334336 AAGATTACCAAAGTACCCTCGATTTACAAAATTACTGTTTTACCCTCGATTTAC
1 AAAATTACTAAAATACCCTCGACCTACAAAATTACTGAAATACCCTCGACTTAC
80334390 AAAATTA-TAGAAATACCCT
1 AAAATTACTA-AAATACCCT
80334409 TGTAAGGTAG
Statistics
Matches: 58, Mismatches: 14, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
53 1 0.02
54 57 0.98
ACGTcount: A:0.40, C:0.23, G:0.07, T:0.30
Consensus pattern (54 bp):
AAAATTACTAAAATACCCTCGACCTACAAAATTACTGAAATACCCTCGACTTAC
Found at i:80334476 original size:27 final size:27
Alignment explanation
Indices: 80334399--80334479 Score: 99
Period size: 27 Copynumber: 3.0 Consensus size: 27
80334389 CAAAATTATA
* *
80334399 GAAATACCCTTGTAAGGTAGAATTACT
1 GAAATACCCTTGTAGGGTAGAATTACC
* *
80334426 GAAATACCCCTGTAGGATAGAATTACC
1 GAAATACCCTTGTAGGGTAGAATTACC
* * *
80334453 GAGATACCCTTGTGGGGTAAAATTACC
1 GAAATACCCTTGTAGGGTAGAATTACC
80334480 ATTTTTCCCC
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 45 1.00
ACGTcount: A:0.35, C:0.19, G:0.21, T:0.26
Consensus pattern (27 bp):
GAAATACCCTTGTAGGGTAGAATTACC
Found at i:80336467 original size:43 final size:42
Alignment explanation
Indices: 80336397--80336557 Score: 184
Period size: 43 Copynumber: 3.8 Consensus size: 42
80336387 GAAAAGCTCG
* * *
80336397 TACGATGCCAACGTCCCAGATGTGGTCTTACATGTAATCAAA
1 TACGATGCCAACATCCCAGACGTGGTCTTACATGAAATCAAA
***
80336439 TATCGATGCCATTGTCCCAGACAG-GGTCTTACATGAAATCAAA
1 TA-CGATGCCAACATCCCAGAC-GTGGTCTTACATGAAATCAAA
80336482 TACGATGCCAACATCCCAGACGTGGTCTTACACAT-AAATCATAA
1 TACGATGCCAACATCCCAGACGTGGTCTT--ACATGAAATCA-AA
*
80336526 GT-TGATGCCAACATCCCAGACGTGGTCTTACA
1 -TACGATGCCAACATCCCAGACGTGGTCTTACA
80336558 CGATAACACA
Statistics
Matches: 104, Mismatches: 8, Indels: 14
0.83 0.06 0.11
Matches are distributed among these distances:
41 1 0.01
42 27 0.26
43 42 0.40
44 33 0.32
45 1 0.01
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.25
Consensus pattern (42 bp):
TACGATGCCAACATCCCAGACGTGGTCTTACATGAAATCAAA
Found at i:80349657 original size:16 final size:16
Alignment explanation
Indices: 80349636--80349667 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
80349626 CATGCATTGA
*
80349636 ACATAATGAACATAAT
1 ACATAATCAACATAAT
80349652 ACATAATCAACATAAT
1 ACATAATCAACATAAT
80349668 CTTGCATTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.56, C:0.16, G:0.03, T:0.25
Consensus pattern (16 bp):
ACATAATCAACATAAT
Found at i:80351913 original size:39 final size:39
Alignment explanation
Indices: 80351856--80351946 Score: 137
Period size: 39 Copynumber: 2.3 Consensus size: 39
80351846 GCATGATACT
* *
80351856 TGGAAACATATCCGGACTTGAGGTCCGCAGGCTACGTGC
1 TGGAAACATATCCAGACTTGAGGTCCGCAGGCTACATGC
*
80351895 TGGAAACATATCCAGACTTGAGGTCCGCAGGCTATATGC
1 TGGAAACATATCCAGACTTGAGGTCCGCAGGCTACATGC
* *
80351934 CGGAAATATATCC
1 TGGAAACATATCC
80351947 GGGCTTAAAG
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 47 1.00
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.22
Consensus pattern (39 bp):
TGGAAACATATCCAGACTTGAGGTCCGCAGGCTACATGC
Done.