Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 243 of 349
Found at i:80359835 original size:39 final size:39
Alignment explanation
Indices: 80359776--80359887 Score: 143
Period size: 39 Copynumber: 2.8 Consensus size: 39
80359766 GCATGATACT
* *
80359776 TGGAAACGTATCCGGACTTGAGGTCCGCAGCCTACGTGC
1 TGGAAACATATCCGGGCTTGAGGTCCGCAGCCTACGTGC
* * *
80359815 TGGAAACATATCTGGGCTTGAGGTCCGCAGGCTATGTGC
1 TGGAAACATATCCGGGCTTGAGGTCCGCAGCCTACGTGC
* * *
80359854 TGGAAATATATCCGGGCTTAAAGTCCCGCAGCCT
1 TGGAAACATATCCGGGCTTGAGGT-CCGCAGCCT
80359888 TTATGCTAAG
Statistics
Matches: 62, Mismatches: 10, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
39 54 0.87
40 8 0.13
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.23
Consensus pattern (39 bp):
TGGAAACATATCCGGGCTTGAGGTCCGCAGCCTACGTGC
Found at i:80363462 original size:38 final size:38
Alignment explanation
Indices: 80363320--80363462 Score: 198
Period size: 38 Copynumber: 3.8 Consensus size: 38
80363310 AATCGTACTG
* *
80363320 TTATTCAGGCTTAGTGCCTTA-CAGGTTTAGTGTCAGTG
1 TTATTCAGGCTTAGTGCC-TAGCAGGCTTAGTGTCAGTA
* *
80363358 TTATTCAGGCTTAGTGCCTAGCAGACTTTGTGTCAGTA
1 TTATTCAGGCTTAGTGCCTAGCAGGCTTAGTGTCAGTA
* *
80363396 TTATTCAGGCTTTGTGCCTAGCAAGCTTAGTGTCAGTA
1 TTATTCAGGCTTAGTGCCTAGCAGGCTTAGTGTCAGTA
* *
80363434 TTATTTAGGCTTAGTGCCTAGTAGGCTTA
1 TTATTCAGGCTTAGTGCCTAGCAGGCTTA
80363463 TTTCCTGTGT
Statistics
Matches: 92, Mismatches: 12, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
37 2 0.02
38 90 0.98
ACGTcount: A:0.20, C:0.17, G:0.24, T:0.38
Consensus pattern (38 bp):
TTATTCAGGCTTAGTGCCTAGCAGGCTTAGTGTCAGTA
Found at i:80363476 original size:38 final size:37
Alignment explanation
Indices: 80363320--80363484 Score: 154
Period size: 38 Copynumber: 4.4 Consensus size: 37
80363310 AATCGTACTG
* * *
80363320 TTATTCAGGCTTAGTGCCTTA-CAGGTTTAGTGTCAGTG
1 TTATTCAGGCTTAGTGCC-TAGCAGGCTTA-TTTCAGTA
*
80363358 TTATTCAGGCTTAGTGCCTAGCAGACTT-TGTGTCAGTA
1 TTATTCAGGCTTAGTGCCTAGCAGGCTTAT-T-TCAGTA
* * *
80363396 TTATTCAGGCTTTGTGCCTAGCAAGCTTAGTGTCAGTA
1 TTATTCAGGCTTAGTGCCTAGCAGGCTTA-TTTCAGTA
* * * *
80363434 TTATTTAGGCTTAGTGCCTAGTAGGCTTATTTCCTGTG
1 TTATTCAGGCTTAGTGCCTAGCAGGCTTATTT-CAGTA
*
80363472 TTATTTAGGCTTA
1 TTATTCAGGCTTA
80363485 TAGATGGTGT
Statistics
Matches: 106, Mismatches: 15, Indels: 12
0.80 0.11 0.09
Matches are distributed among these distances:
36 1 0.01
37 4 0.04
38 100 0.94
40 1 0.01
ACGTcount: A:0.19, C:0.16, G:0.24, T:0.41
Consensus pattern (37 bp):
TTATTCAGGCTTAGTGCCTAGCAGGCTTATTTCAGTA
Found at i:80366122 original size:30 final size:30
Alignment explanation
Indices: 80366082--80366149 Score: 127
Period size: 30 Copynumber: 2.3 Consensus size: 30
80366072 TCAAACTTCA
*
80366082 TATACTTAGTATCAATTACCACATAGGTAC
1 TATACGTAGTATCAATTACCACATAGGTAC
80366112 TATACGTAGTATCAATTACCACATAGGTAC
1 TATACGTAGTATCAATTACCACATAGGTAC
80366142 TATACGTA
1 TATACGTA
80366150 CTTGTACTCT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 37 1.00
ACGTcount: A:0.37, C:0.19, G:0.12, T:0.32
Consensus pattern (30 bp):
TATACGTAGTATCAATTACCACATAGGTAC
Found at i:80378414 original size:40 final size:39
Alignment explanation
Indices: 80378370--80378621 Score: 212
Period size: 40 Copynumber: 6.6 Consensus size: 39
80378360 GCTCCTCGTT
*
80378370 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TATAGTAATTCGCA
* * *
80378410 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TATAGTAATTCGCA
* *
80378450 CAAATGCCTTCGGG-CTTAGCCC-G----G-AATTAGTA
1 CAAATGCCTTCGGGACTTAGCCCGGTATAGTAATTCGCA
*
80378482 CAAATGCCTTC-GG-CTTAGCCCGGAATTAGT-ATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTA-TAGTAAT-TCGCA
*
80378520 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGT-ATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTA-TAGTAAT-TCGCA
* * *
80378559 CAAATGCCTTC-GGATCTTAGTCCGG-ATATGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGTATA-GT-AATTCGCA
80378599 C-AA-GCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
80378622 ACATCATTCA
Statistics
Matches: 182, Mismatches: 15, Indels: 32
0.79 0.07 0.14
Matches are distributed among these distances:
31 10 0.05
32 17 0.09
33 1 0.01
37 3 0.02
38 34 0.19
39 53 0.29
40 63 0.35
41 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGGTATAGTAATTCGCA
Found at i:80378500 original size:31 final size:32
Alignment explanation
Indices: 80378449--80378551 Score: 136
Period size: 31 Copynumber: 3.0 Consensus size: 32
80378439 AGTAACTCGC
80378449 ACAAATGCCTTCGGGCTTAGCCCGGAATTAGT
1 ACAAATGCCTTCGGGCTTAGCCCGGAATTAGT
80378481 ACAAATGCCTTC-GGCTTAGCCCGGAATTAGTATCT
1 ACAAATGCCTTCGGGCTTAGCCCGGAATTAG----T
80378516 CGCACAAATGCCTTCGGGCTTAGCCCGGAATTAGT
1 ---ACAAATGCCTTCGGGCTTAGCCCGGAATTAGT
80378551 A
1 A
80378552 TCTCGCACAA
Statistics
Matches: 63, Mismatches: 0, Indels: 16
0.80 0.00 0.20
Matches are distributed among these distances:
31 18 0.29
32 13 0.21
35 2 0.03
38 12 0.19
39 18 0.29
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.25
Consensus pattern (32 bp):
ACAAATGCCTTCGGGCTTAGCCCGGAATTAGT
Found at i:80378524 original size:70 final size:72
Alignment explanation
Indices: 80378409--80378551 Score: 245
Period size: 70 Copynumber: 2.0 Consensus size: 72
80378399 AGTAATTCGC
*
80378409 ACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGGCTTAGCCCGG
1 ACAAATGCCTTCGGGACTTAACCCGGAATTAGTAACTCGCACAAATGCCTTCGGGCTTAGCCCGG
80378474 AATTAGT
66 AATTAGT
* *
80378481 ACAAATGCCTTC-GG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGGCTTAGCCCGG
1 ACAAATGCCTTCGGGACTTAACCCGGAATTAGTAACTCGCACAAATGCCTTCGGGCTTAGCCCGG
80378544 AATTAGT
66 AATTAGT
80378551 A
1 A
80378552 TCTCGCACAA
Statistics
Matches: 68, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
70 54 0.79
71 2 0.03
72 12 0.18
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (72 bp):
ACAAATGCCTTCGGGACTTAACCCGGAATTAGTAACTCGCACAAATGCCTTCGGGCTTAGCCCGG
AATTAGT
Found at i:80378545 original size:39 final size:39
Alignment explanation
Indices: 80378481--80378571 Score: 175
Period size: 39 Copynumber: 2.4 Consensus size: 39
80378471 CGGAATTAGT
80378481 ACAAATGCCTTC-GGCTTAGCCCGGAATTAGTATCTCGC
1 ACAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGC
80378519 ACAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGC
1 ACAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGC
80378558 ACAAATGCCTTCGG
1 ACAAATGCCTTCGG
80378572 ATCTTAGTCC
Statistics
Matches: 52, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
38 12 0.23
39 40 0.77
ACGTcount: A:0.24, C:0.29, G:0.22, T:0.25
Consensus pattern (39 bp):
ACAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGC
Found at i:80386399 original size:40 final size:40
Alignment explanation
Indices: 80386355--80386617 Score: 324
Period size: 39 Copynumber: 6.7 Consensus size: 40
80386345 GCTCCTCGTT
* *
80386355 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCA
* *
80386395 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
* *
80386435 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGTA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
* *
80386474 CAAATGCCTTCAGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
* *
80386513 CAAATGCCTTCGGG-CTTAGCCCAGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
* * *
80386552 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGTAAC-TCGCA
80386593 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
80386618 CATCATTCAA
Statistics
Matches: 201, Mismatches: 16, Indels: 12
0.88 0.07 0.05
Matches are distributed among these distances:
38 2 0.01
39 106 0.53
40 77 0.38
41 16 0.08
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
Found at i:80392066 original size:46 final size:46
Alignment explanation
Indices: 80391998--80392088 Score: 128
Period size: 46 Copynumber: 2.0 Consensus size: 46
80391988 TATATATACA
* * *
80391998 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATCTCACATTAACCATTCGGCTTTACCACATATC
* * *
80392044 CATCTCATACACATTTCGCATTAACCATTCGGCTTTCCCACATAT
1 CATCTCATACACATCTCACATTAACCATTCGGCTTTACCACATAT
80392089 ATACACATCC
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
46 39 1.00
ACGTcount: A:0.27, C:0.32, G:0.07, T:0.34
Consensus pattern (46 bp):
CATCTCATACACATCTCACATTAACCATTCGGCTTTACCACATATC
Found at i:80392131 original size:22 final size:22
Alignment explanation
Indices: 80392105--80392180 Score: 59
Period size: 22 Copynumber: 3.3 Consensus size: 22
80392095 ATCCACGTTC
80392105 ATCACATTGGCCATTCTGCCTT
1 ATCACATTGGCCATTCTGCCTT
*
80392127 ATCACATGTATG-CATGT-T-CACATTT
1 ATCACAT-T-GGCCAT-TCTGC-C--TT
*
80392152 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCTGCCTT
80392174 ATCACAT
1 ATCACAT
80392181 ATATGCATGT
Statistics
Matches: 42, Mismatches: 3, Indels: 18
0.67 0.05 0.29
Matches are distributed among these distances:
22 17 0.40
23 8 0.19
24 7 0.17
25 10 0.24
ACGTcount: A:0.24, C:0.28, G:0.13, T:0.36
Consensus pattern (22 bp):
ATCACATTGGCCATTCTGCCTT
Found at i:80392273 original size:22 final size:22
Alignment explanation
Indices: 80392246--80392321 Score: 66
Period size: 22 Copynumber: 3.3 Consensus size: 22
80392236 GTTCACATTC
80392246 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
80392268 ATCACATAT-ACACATGTTC-ACATT
1 ATCACAT-TGGC-CA--TTCGGCCTT
80392292 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
80392315 ATCACAT
1 ATCACAT
80392322 ATATGCATGT
Statistics
Matches: 41, Mismatches: 6, Indels: 14
0.67 0.10 0.23
Matches are distributed among these distances:
22 18 0.44
23 6 0.15
24 6 0.15
25 11 0.27
ACGTcount: A:0.26, C:0.30, G:0.12, T:0.32
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:80392693 original size:47 final size:47
Alignment explanation
Indices: 80392102--80392691 Score: 874
Period size: 47 Copynumber: 12.6 Consensus size: 47
80392092 CACATCCACG
* **
80392102 TTCATCACATTGGCCATTCTGCCTTATCACATGTATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
* * *
80392149 TTTATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCATA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
*
80392196 TTCTTCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
* **
80392243 TTCATCACATTGGCCATTCGGCCTTATCACATATACACATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
* *
80392290 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCATA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
*
80392337 TTCTTCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
* ** * **
80392384 TTCATTACATTGGCCATTTTGCCTTATCACATATACACATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
* *
80392431 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCATA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
*
80392478 TTCATCACATTGGCCATTCGGCCTTATCACACATATACATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
* *
80392525 TTCATCACATTGGCCATTCGGTCTTATCACACAAATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
** * * * *
80392572 TTCATCACATTTTCCATTCGACCTTAGCACACAAATGTATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
* * *
80392619 TTCATCACATTTGCCATTCGGCCTTAGCACACAAATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
*
80392666 TTCATCACATTTGCCATTCGGCCTTA
1 TTCATCACATTGGCCATTCGGCCTTA
80392692 GCTCATGTAT
Statistics
Matches: 497, Mismatches: 46, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 497 1.00
ACGTcount: A:0.26, C:0.28, G:0.12, T:0.35
Consensus pattern (47 bp):
TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
Found at i:80398450 original size:24 final size:24
Alignment explanation
Indices: 80398422--80398470 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
80398412 CCCGAAAAGG
80398422 TAACAACATCAAATCAGCAGGGCA
1 TAACAACATCAAATCAGCAGGGCA
*
80398446 TAACAACATTAAATCAGCAGGGCA
1 TAACAACATCAAATCAGCAGGGCA
80398470 T
1 T
80398471 TCATAGCCTC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.45, C:0.22, G:0.16, T:0.16
Consensus pattern (24 bp):
TAACAACATCAAATCAGCAGGGCA
Found at i:80404744 original size:45 final size:46
Alignment explanation
Indices: 80404680--80404864 Score: 200
Period size: 45 Copynumber: 4.0 Consensus size: 46
80404670 CATGTCGGTG
80404680 TTGATTGTGAGACAGTGTAAGACCATGT-T-GGACATGGCATCGGCA
1 TTGATTGTGAG-CAGTGTAAGACCATGTCTAGGACATGGCATCGGCA
* *
80404725 TTGATTGTGAGTCAGTGTAAGACCATGT-T-GGACATGGCATTGACA
1 TTGATTGTGAG-CAGTGTAAGACCATGTCTAGGACATGGCATCGGCA
* *
80404770 TTGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCA
1 TTGAT-TGTGAGC-AGTGTAAGACCATGTCTAGGACATGGCATCGG-CA
* * * *
80404819 -TAACATGAGAGCCAGTGTAAGACCATGTCTAGGACATGGAATCGGC
1 TTGA-TTGTGAG-CAGTGTAAGACCATGTCTAGGACATGGCATCGGC
80404865 CATTCACCCT
Statistics
Matches: 121, Mismatches: 12, Indels: 12
0.83 0.08 0.08
Matches are distributed among these distances:
45 48 0.40
46 20 0.17
47 2 0.02
48 48 0.40
49 3 0.02
ACGTcount: A:0.27, C:0.17, G:0.30, T:0.26
Consensus pattern (46 bp):
TTGATTGTGAGCAGTGTAAGACCATGTCTAGGACATGGCATCGGCA
Found at i:80404836 original size:48 final size:46
Alignment explanation
Indices: 80404680--80404868 Score: 204
Period size: 48 Copynumber: 4.0 Consensus size: 46
80404670 CATGTCGGTG
* *
80404680 TTGATTGTGAGACAGTGTAAGACCATGTTGGACATGGCATCGG-CA
1 TTGAATGTGAGCCAGTGTAAGACCATGTTGGACATGGCATCGGCCA
* * * *
80404725 TTGATTGTGAGTCAGTGTAAGACCATGTTGGACATGGCAT-TGACA
1 TTGAATGTGAGCCAGTGTAAGACCATGTTGGACATGGCATCGGCCA
* *
80404770 TTGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCA
1 TTGA-ATGTGAGCCAGTGTAAGACCATGT-T-GGACATGGCATCGGCCA
* * *
80404819 -TAACATGAGAGCCAGTGTAAGACCATGTCTAGGACATGGAATCGGCCA
1 TTGA-ATGTGAGCCAGTGTAAGACCATGT-T-GGACATGGCATCGGCCA
80404867 TT
1 TT
80404869 CACCCTCTTG
Statistics
Matches: 123, Mismatches: 15, Indels: 8
0.84 0.10 0.05
Matches are distributed among these distances:
44 1 0.01
45 45 0.37
46 20 0.16
47 1 0.01
48 52 0.42
49 4 0.03
ACGTcount: A:0.27, C:0.17, G:0.29, T:0.27
Consensus pattern (46 bp):
TTGAATGTGAGCCAGTGTAAGACCATGTTGGACATGGCATCGGCCA
Found at i:80407941 original size:39 final size:39
Alignment explanation
Indices: 80407842--80408075 Score: 182
Period size: 39 Copynumber: 6.0 Consensus size: 39
80407832 ATTTTCAATA
* * * *
80407842 CACCGACACATAG-CTGCTAGGCATAAAGCCTAAATAAT
1 CACCGGCACACAGCCTGCTAGGCACATAGCCTAAATAAT
* * * * * ** *
80407880 AATCAGCATATAGCCTATTAGGCACAAAGCCTAAATAAT
1 CACCGGCACACAGCCTGCTAGGCACATAGCCTAAATAAT
* *
80407919 CACCGGCACACAACCTGCTAGGCACATAGCCCAAATAAT
1 CACCGGCACACAGCCTGCTAGGCACATAGCCTAAATAAT
*** ** **
80407958 CACCTATATGCAGCCTGCTAGGCACATAGCCCGGAATAAT
1 CACCGGCACACAGCCTGCTAGGCACATAG-CCTAAATAAT
* * * **
80407998 CATCGGCACACAGCCTTCTAGGCACACAGCCCGAATAAT
1 CACCGGCACACAGCCTGCTAGGCACATAGCCTAAATAAT
* * * *
80408037 CACCTGCACACTGCCTGCTTGGCACATAGCCTGAATAAT
1 CACCGGCACACAGCCTGCTAGGCACATAGCCTAAATAAT
80408076 ATCCGTGTTT
Statistics
Matches: 152, Mismatches: 42, Indels: 3
0.77 0.21 0.02
Matches are distributed among these distances:
38 8 0.05
39 115 0.76
40 29 0.19
ACGTcount: A:0.34, C:0.30, G:0.17, T:0.19
Consensus pattern (39 bp):
CACCGGCACACAGCCTGCTAGGCACATAGCCTAAATAAT
Found at i:80408053 original size:79 final size:78
Alignment explanation
Indices: 80407898--80408075 Score: 212
Period size: 79 Copynumber: 2.3 Consensus size: 78
80407888 TATAGCCTAT
* ** *
80407898 TAGGCACAAAGCCTAAATAATCACCGGCACACAACCTGCTAGGCACATAGCCCAAATAATCACCT
1 TAGGCACATAGCCGGAATAATCACCGGCACACAACCTGCTAGGCACACAGCCCAAATAATCACCT
* **
80407963 ATATGCAGCCTGC
66 ACACACAGCCTGC
* * * *
80407976 TAGGCACATAGCCCGGAATAATCATCGGCACACAGCCTTCTAGGCACACAGCCCGAATAATCACC
1 TAGGCACATAG-CCGGAATAATCACCGGCACACAACCTGCTAGGCACACAGCCCAAATAATCACC
* *
80408041 TGCACACTGCCTGC
65 TACACACAGCCTGC
* *
80408055 TTGGCACATAGCCTGAATAAT
1 TAGGCACATAGCCGGAATAAT
80408076 ATCCGTGTTT
Statistics
Matches: 84, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
78 19 0.23
79 65 0.77
ACGTcount: A:0.33, C:0.32, G:0.17, T:0.18
Consensus pattern (78 bp):
TAGGCACATAGCCGGAATAATCACCGGCACACAACCTGCTAGGCACACAGCCCAAATAATCACCT
ACACACAGCCTGC
Found at i:80408203 original size:36 final size:36
Alignment explanation
Indices: 80408163--80408234 Score: 126
Period size: 36 Copynumber: 2.0 Consensus size: 36
80408153 AATAAGATTA
80408163 ATAGTAACCATATAACAAACTTACCTAGATTGAATC
1 ATAGTAACCATATAACAAACTTACCTAGATTGAATC
* *
80408199 ATAGTAACCATATAACGAACTTACCTGGATTGAATC
1 ATAGTAACCATATAACAAACTTACCTAGATTGAATC
80408235 GTAGAAATTG
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.42, C:0.19, G:0.11, T:0.28
Consensus pattern (36 bp):
ATAGTAACCATATAACAAACTTACCTAGATTGAATC
Found at i:80411528 original size:42 final size:42
Alignment explanation
Indices: 80411480--80411596 Score: 128
Period size: 42 Copynumber: 2.7 Consensus size: 42
80411470 TTTAGTATTG
*
80411480 ATGCCTATGTCCCAGACAGGGTCTTACACGAAA-TCAAATACA
1 ATGCCTATGTCCCAGACACGGTCTTACACGAAACTCAAAT-CA
* * * *
80411522 ATGCCTATGTCTCAAACATGGTCTTACACGTAAATCTCAAATCG
1 ATGCCTATGTCCCAGACACGGTCTTACACG-AAA-CTCAAATCA
* * *
80411566 AGGCCTGTATCCCAGACACGGTCTTACACGA
1 ATGCCTATGTCCCAGACACGGTCTTACACGA
80411597 TATCTCAGAT
Statistics
Matches: 62, Mismatches: 10, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
42 27 0.44
43 4 0.06
44 25 0.40
45 6 0.10
ACGTcount: A:0.32, C:0.27, G:0.17, T:0.24
Consensus pattern (42 bp):
ATGCCTATGTCCCAGACACGGTCTTACACGAAACTCAAATCA
Found at i:80415671 original size:22 final size:22
Alignment explanation
Indices: 80415645--80415702 Score: 59
Period size: 22 Copynumber: 2.7 Consensus size: 22
80415635 TGTTTATAGC
*
80415645 TTATGAAATGATATA-ATTTGG
1 TTATGAAATGATATAGAATTGG
*
80415666 TATATGATATG-TATAGAATTGG
1 T-TATGAAATGATATAGAATTGG
*
80415688 TT-GGAAATGATATAG
1 TTATGAAATGATATAG
80415703 CATGATTGGT
Statistics
Matches: 30, Mismatches: 4, Indels: 6
0.75 0.10 0.15
Matches are distributed among these distances:
20 5 0.17
21 11 0.37
22 14 0.47
ACGTcount: A:0.38, C:0.00, G:0.22, T:0.40
Consensus pattern (22 bp):
TTATGAAATGATATAGAATTGG
Found at i:80424836 original size:48 final size:47
Alignment explanation
Indices: 80424784--80425152 Score: 186
Period size: 48 Copynumber: 7.8 Consensus size: 47
80424774 GCCACATTAT
80424784 GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGA
1 GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGA
** * * * * *
80424831 CGAGAGCTTGTGTAAGA-TATGTTTAGGACAT-GCATCGGCCTCGAGA
1 -GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGA
* * * * * *
80424877 TCTA-AGCTAATGTAAGA-TATGTTTGGGACAT-GCATTGGC--T-ACGA
1 --GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGA-GA
* * * *
80424921 GATGTGTCAGTGTAAGACCATGTCTGGGACATGGCTTCGACACGTAT-AGA
1 GA-GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCA--T-TGAGA
* * * ** *
80424971 G-GTGTCAGTGTAAGACCATGTCTGGGACATGGCATCGACACGGATATGT
1 GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTG--A-GA
* * * * * **
80425020 GAGAGCTAGTGTAAGACCATGTCTGGGACATGGCGTCAGCCTCGATTTT
1 GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGA--GA
* * * * * *
80425069 GATAGTCAATGTAAGACCATGTTTGGGACATGGCATCGAC-TTAATG-
1 GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGA-GA
*
80425115 GATGAGCCAGTGTAAGACCATGTTTGGGACATGGCATC
1 GA-GAGCCAGTGTAAGACCATGTCTGGGACATGGCATC
80425153 AGTGTTATAC
Statistics
Matches: 252, Mismatches: 51, Indels: 37
0.74 0.15 0.11
Matches are distributed among these distances:
42 1 0.00
43 1 0.00
44 11 0.04
45 12 0.05
46 51 0.20
47 46 0.18
48 56 0.22
49 36 0.14
50 36 0.14
51 2 0.01
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.26
Consensus pattern (47 bp):
GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGA
Found at i:80425036 original size:98 final size:96
Alignment explanation
Indices: 80424928--80425154 Score: 264
Period size: 96 Copynumber: 2.3 Consensus size: 96
80424918 CGAGATGTGT
* *
80424928 CAGTGTAAGACCATGTCTGGGACATGGCTTC-GACACG-TATAGAGGT-GTCAGTGTAAGACCAT
1 CAGTGTAAGACCATGTCTGGGACATGGCGTCAGACACGATATAGA--TAGTCAATGTAAGACCAT
80424990 GTCTGGGACATGGCATCGACACGGATATGTGA-GAGC
64 GTCTGGGACATGGCATCG--ACGGA-ATG-GATGAGC
* * * * *
80425026 TAGTGTAAGACCATGTCTGGGACATGGCGTCAGCCTCGATTTTGATAGTCAATGTAAGACCATGT
1 CAGTGTAAGACCATGTCTGGGACATGGCGTCAGACACGATATAGATAGTCAATGTAAGACCATGT
* **
80425091 TTGGGACATGGCATCGACTTAATGGATGAGC
66 CTGGGACATGGCATCGACGGAATGGATGAGC
* *
80425122 CAGTGTAAGACCATGTTTGGGACATGGCATCAG
1 CAGTGTAAGACCATGTCTGGGACATGGCGTCAG
80425155 TGTTATACCC
Statistics
Matches: 112, Mismatches: 13, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
95 2 0.02
96 37 0.33
97 3 0.03
98 30 0.27
99 36 0.32
100 4 0.04
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.25
Consensus pattern (96 bp):
CAGTGTAAGACCATGTCTGGGACATGGCGTCAGACACGATATAGATAGTCAATGTAAGACCATGT
CTGGGACATGGCATCGACGGAATGGATGAGC
Found at i:80425101 original size:49 final size:48
Alignment explanation
Indices: 80424979--80425154 Score: 169
Period size: 47 Copynumber: 3.6 Consensus size: 48
80424969 GAGGTGTCAG
* * * * *
80424979 TGTAAGACCATGTCTGGGACATGGCATCGACACGGATATGTGA-GAGCTAG
1 TGTAAGACCATGTTTGGGACATGGCATC-AGACTGA-ATG-GATGAGCCAA
* * * * * *
80425029 TGTAAGACCATGTCTGGGACATGGCGTCAGCCTCGATTTTGAT-AGTCAA
1 TGTAAGACCATGTTTGGGACATGGCATCAGACT-GA-ATGGATGAGCCAA
* *
80425078 TGTAAGACCATGTTTGGGACATGGCATC-GACTTAATGGATGAGCCAG
1 TGTAAGACCATGTTTGGGACATGGCATCAGACTGAATGGATGAGCCAA
80425125 TGTAAGACCATGTTTGGGACATGGCATCAG
1 TGTAAGACCATGTTTGGGACATGGCATCAG
80425155 TGTTATACCC
Statistics
Matches: 105, Mismatches: 17, Indels: 10
0.80 0.13 0.08
Matches are distributed among these distances:
46 4 0.04
47 33 0.31
48 4 0.04
49 33 0.31
50 31 0.30
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.26
Consensus pattern (48 bp):
TGTAAGACCATGTTTGGGACATGGCATCAGACTGAATGGATGAGCCAA
Found at i:80434723 original size:40 final size:40
Alignment explanation
Indices: 80434686--80434910 Score: 269
Period size: 40 Copynumber: 5.7 Consensus size: 40
80434676 GCTACTCGTT
* *
80434686 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
80434726 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
80434766 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * * * *
80434806 CCAATGCCTTCGGG-CTTAGCCCGAAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * * * *
80434845 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
80434886 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
80434911 CATCATTCGA
Statistics
Matches: 163, Mismatches: 17, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
38 2 0.01
39 31 0.19
40 117 0.72
41 13 0.08
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:80434870 original size:119 final size:120
Alignment explanation
Indices: 80434688--80434910 Score: 292
Period size: 119 Copynumber: 1.9 Consensus size: 120
80434678 TACTCGTTCA
**
80434688 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACATAGCCCGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
* *
80434753 TTAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
66 ATAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
* * **
80434808 AATGCCTTCGGG-CTTAGCCCGAA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACATAGCCCGAATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
* * *
80434870 ATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGA
80434911 CATCATTCGA
Statistics
Matches: 89, Mismatches: 11, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
118 4 0.04
119 65 0.73
120 20 0.22
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
ATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
Found at i:80436108 original size:56 final size:56
Alignment explanation
Indices: 80436041--80436160 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
80436031 TATTAGTTTA
*
80436041 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGAAATGTT
80436097 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGAAATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGAAATGTT
80436153 TTGCCCAT
1 TTGCCCAT
80436161 CATCCCTTGT
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.23, C:0.23, G:0.09, T:0.44
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGAAATGTT
Found at i:80437320 original size:11 final size:11
Alignment explanation
Indices: 80437298--80437369 Score: 76
Period size: 11 Copynumber: 6.7 Consensus size: 11
80437288 TAATATACAC
80437298 GATATG-ACAT
1 GATATGCACAT
80437308 GATATGCACAT
1 GATATGCACAT
80437319 GATATGCACAT
1 GATATGCACAT
**
80437330 GATATG-TTAT
1 GATATGCACAT
*
80437340 GAGATGCACAT
1 GATATGCACAT
* *
80437351 GATATACTCAT
1 GATATGCACAT
*
80437362 TATATGCA
1 GATATGCA
80437370 TGGGTTGGGT
Statistics
Matches: 49, Mismatches: 11, Indels: 3
0.78 0.17 0.05
Matches are distributed among these distances:
10 13 0.27
11 36 0.73
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (11 bp):
GATATGCACAT
Found at i:80437341 original size:21 final size:22
Alignment explanation
Indices: 80437298--80437369 Score: 76
Period size: 21 Copynumber: 3.4 Consensus size: 22
80437288 TAATATACAC
80437298 GATATG-ACATGATATGCACAT
1 GATATGCACATGATATGCACAT
**
80437319 GATATGCACATGATATG-TTAT
1 GATATGCACATGATATGCACAT
* * *
80437340 GAGATGCACATGATATACTCAT
1 GATATGCACATGATATGCACAT
*
80437362 TATATGCA
1 GATATGCA
80437370 TGGGTTGGGT
Statistics
Matches: 42, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
21 23 0.55
22 19 0.45
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (22 bp):
GATATGCACATGATATGCACAT
Found at i:80437367 original size:32 final size:32
Alignment explanation
Indices: 80437290--80437367 Score: 88
Period size: 32 Copynumber: 2.5 Consensus size: 32
80437280 TGAGATTTTA
** *
80437290 ATATACAC--GATATGACATGATATGCACATG
1 ATATACACATGATATGTTATGAGATGCACATG
*
80437320 ATATGCACATGATATGTTATGAGATGCACATG
1 ATATACACATGATATGTTATGAGATGCACATG
* *
80437352 ATATACTCATTATATG
1 ATATACACATGATATG
80437368 CATGGGTTGG
Statistics
Matches: 39, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
30 7 0.18
32 32 0.82
ACGTcount: A:0.37, C:0.14, G:0.17, T:0.32
Consensus pattern (32 bp):
ATATACACATGATATGTTATGAGATGCACATG
Found at i:80437446 original size:25 final size:25
Alignment explanation
Indices: 80437401--80437473 Score: 83
Period size: 25 Copynumber: 2.9 Consensus size: 25
80437391 GGAGGAAGTG
* * *
80437401 CAAAAAGGGTTTTGCCTTAGTTTAC
1 CAAAAAGGGCTTTGCCCTAGTTAAC
* * *
80437426 CGAAATGGGCTTTGCCCTAGTTAAT
1 CAAAAAGGGCTTTGCCCTAGTTAAC
*
80437451 CAAAAAGGGCTTTGCCCCAGTTA
1 CAAAAAGGGCTTTGCCCTAGTTA
80437474 TTAAAAGAGG
Statistics
Matches: 39, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
25 39 1.00
ACGTcount: A:0.27, C:0.21, G:0.22, T:0.30
Consensus pattern (25 bp):
CAAAAAGGGCTTTGCCCTAGTTAAC
Found at i:80445263 original size:25 final size:25
Alignment explanation
Indices: 80445217--80445267 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
80445207 CTGAAAATAT
* * **
80445217 GAAAAATGACTATTTTGGCCCTAGG
1 GAAAAATGACCATTATACCCCTAGG
80445242 GAAAAATGACCATTATACCCCTAGG
1 GAAAAATGACCATTATACCCCTAGG
80445267 G
1 G
80445268 TTTAATTAAG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.35, C:0.20, G:0.22, T:0.24
Consensus pattern (25 bp):
GAAAAATGACCATTATACCCCTAGG
Found at i:80445318 original size:10 final size:10
Alignment explanation
Indices: 80445297--80445363 Score: 64
Period size: 10 Copynumber: 6.6 Consensus size: 10
80445287 CATGAGATTT
80445297 TGATAT-ACA
1 TGATATGACA
*
80445306 TGATTTGACA
1 TGATATGACA
*
80445316 TGATCTGACA
1 TGATATGACA
80445326 TGATATGCACA
1 TGATATG-ACA
**
80445337 TGATATGTTA
1 TGATATGACA
*
80445347 TGAGATGCACA
1 TGATATG-ACA
80445358 TGATAT
1 TGATAT
80445364 ACTCATTATA
Statistics
Matches: 46, Mismatches: 9, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
9 5 0.11
10 25 0.54
11 16 0.35
ACGTcount: A:0.34, C:0.12, G:0.19, T:0.34
Consensus pattern (10 bp):
TGATATGACA
Found at i:80445339 original size:21 final size:21
Alignment explanation
Indices: 80445297--80445363 Score: 75
Period size: 21 Copynumber: 3.3 Consensus size: 21
80445287 CATGAGATTT
*
80445297 TGATAT-ACATGATTTG-ACA
1 TGATATGACATGATATGCACA
*
80445316 TGATCTGACATGATATGCACA
1 TGATATGACATGATATGCACA
** *
80445337 TGATATGTTATGAGATGCACA
1 TGATATGACATGATATGCACA
80445358 TGATAT
1 TGATAT
80445364 ACTCATTATA
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
19 5 0.12
20 9 0.22
21 26 0.65
ACGTcount: A:0.34, C:0.12, G:0.19, T:0.34
Consensus pattern (21 bp):
TGATATGACATGATATGCACA
Found at i:80448315 original size:13 final size:13
Alignment explanation
Indices: 80448297--80448322 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
80448287 ATATTATAAT
80448297 TATTTTATGTTAA
1 TATTTTATGTTAA
80448310 TATTTTATGTTAA
1 TATTTTATGTTAA
80448323 AAATAAAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.00, G:0.08, T:0.62
Consensus pattern (13 bp):
TATTTTATGTTAA
Found at i:80449745 original size:40 final size:40
Alignment explanation
Indices: 80449700--80449849 Score: 264
Period size: 40 Copynumber: 3.8 Consensus size: 40
80449690 CTAAGATCCA
*
80449700 AAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTCCCG
1 AAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCG
80449740 AAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCG
1 AAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCG
*
80449780 AAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGTCCCG
1 AAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCG
* *
80449820 AAGGCATTTGTGCGAGTTACTATATCCGGG
1 AAGGCATTTGTGCTAGTGACTATATCCGGG
80449850 TTTGGAAATG
Statistics
Matches: 105, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 105 1.00
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (40 bp):
AAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCG
Found at i:80456366 original size:13 final size:13
Alignment explanation
Indices: 80456348--80456373 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
80456338 ATATTATAAT
80456348 TATTTTATGTTAA
1 TATTTTATGTTAA
80456361 TATTTTATGTTAA
1 TATTTTATGTTAA
80456374 AAATAAAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.00, G:0.08, T:0.62
Consensus pattern (13 bp):
TATTTTATGTTAA
Found at i:80457812 original size:40 final size:40
Alignment explanation
Indices: 80457758--80457992 Score: 370
Period size: 40 Copynumber: 5.9 Consensus size: 40
80457748 TCCGAAGGCG
*
80457758 TGTGCTAGTTACTATATCCGGGCTAAGTCCCGAAGGCATT
1 TGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATT
80457798 TGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATT
1 TGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATT
*
80457838 TGTGCTAGTGATATATATCCGGGCTAAGTCCCGAAGGCATT
1 TGTGCTAGTGA-CTATATCCGGGCTAAGTCCCGAAGGCATT
80457879 TGTG-TAGT-ACTATATCCGGGCTAAGTCCCGAAGGCATT
1 TGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATT
*
80457917 TGTGCTAGTGATTATATCCGGGCTAAGTCCCGAAGGCATT
1 TGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATT
* *
80457957 TGTGCGAGTTG-CTAATATCC-GGCTAAATCCCGAAGG
1 TGTGCTAG-TGACT-ATATCCGGGCTAAGTCCCGAAGG
80457993 TACTTGGGTT
Statistics
Matches: 183, Mismatches: 7, Indels: 10
0.92 0.04 0.05
Matches are distributed among these distances:
38 32 0.17
39 5 0.03
40 106 0.58
41 40 0.22
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (40 bp):
TGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATT
Found at i:80457953 original size:119 final size:120
Alignment explanation
Indices: 80457758--80457992 Score: 395
Period size: 119 Copynumber: 2.0 Consensus size: 120
80457748 TCCGAAGGCG
80457758 TGTGCTAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTA
1 TGTGCTAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTA
* *
80457823 AGTCCCGAAGGCATTTGTGCTAG-TGATATATATCCGGGCTAAGTCCCGAAGGCATT
66 AGTCCCGAAGGCATTTGTGCGAGTTGATA-ATATCC-GGCTAAATCCCGAAGGCATT
*
80457879 TGTG-TAG-TACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATTATATCCGGGCTA
1 TGTGCTAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTA
*
80457942 AGTCCCGAAGGCATTTGTGCGAGTTGCTAATATCCGGCTAAATCCCGAAGG
66 AGTCCCGAAGGCATTTGTGCGAGTTGATAATATCCGGCTAAATCCCGAAGG
80457993 TACTTGGGTT
Statistics
Matches: 109, Mismatches: 4, Indels: 5
0.92 0.03 0.04
Matches are distributed among these distances:
118 15 0.14
119 83 0.76
120 7 0.06
121 4 0.04
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (120 bp):
TGTGCTAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTA
AGTCCCGAAGGCATTTGTGCGAGTTGATAATATCCGGCTAAATCCCGAAGGCATT
Found at i:80460778 original size:49 final size:49
Alignment explanation
Indices: 80460718--80460892 Score: 233
Period size: 49 Copynumber: 3.5 Consensus size: 49
80460708 CTGGTATGCA
* *
80460718 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCAGGTACACG
* * * * * * *
80460767 TAGTAGCCTGCACTTAGTATTACACACGTGATCACAGTTTTCAGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACATGCGA-C-CAATTATCAGGTACACG
* *
80460818 TAGTAGCCTGCACTTAGTACTACACATGCAACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCAGGTACACG
80460867 TAGTAGCCTGCACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
80460893 CGTGACCTCA
Statistics
Matches: 106, Mismatches: 18, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
49 66 0.62
50 2 0.02
51 38 0.36
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCAGGTACACG
Found at i:80460827 original size:100 final size:100
Alignment explanation
Indices: 80460710--80460897 Score: 331
Period size: 100 Copynumber: 1.9 Consensus size: 100
80460700 TAAGCTATCT
* * *
80460710 GGTATGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCTGGTACACGTAGTAGCC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCAACCAATAATCCGGTACACGTAGTAGCC
*
80460775 TGCACTTAGTATTACACACGTGATCACAGTTTTCA
66 TGCACTTAGTACTACACACGTGATCACAGTTTTCA
*
80460810 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCAACCAATTATCCGGTACACGTAGTAGCC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCAACCAATAATCCGGTACACGTAGTAGCC
80460875 TGCACTTAGTACTACACACGTGA
66 TGCACTTAGTACTACACACGTGA
80460898 CCTCACAATA
Statistics
Matches: 83, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
100 83 1.00
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (100 bp):
GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCAACCAATAATCCGGTACACGTAGTAGCC
TGCACTTAGTACTACACACGTGATCACAGTTTTCA
Found at i:80465180 original size:25 final size:25
Alignment explanation
Indices: 80465152--80465203 Score: 95
Period size: 25 Copynumber: 2.1 Consensus size: 25
80465142 ATGTTATATT
80465152 TGATTCATGAGTATATGTATATAAG
1 TGATTCATGAGTATATGTATATAAG
*
80465177 TGATTCATGTGTATATGTATATAAG
1 TGATTCATGAGTATATGTATATAAG
80465202 TG
1 TG
80465204 TTAATGTACT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.33, C:0.04, G:0.21, T:0.42
Consensus pattern (25 bp):
TGATTCATGAGTATATGTATATAAG
Found at i:80467333 original size:13 final size:13
Alignment explanation
Indices: 80467292--80467335 Score: 54
Period size: 13 Copynumber: 3.3 Consensus size: 13
80467282 GGGGTAGGAT
80467292 TCTGTTTATCTG-A
1 TCTG-TTATCTGTA
*
80467305 TCTGTATATTTGTA
1 TCTGT-TATCTGTA
80467319 TCTGTTATCTGTA
1 TCTGTTATCTGTA
80467332 TCTG
1 TCTG
80467336 ATATGGACAT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
12 1 0.04
13 20 0.74
14 6 0.22
ACGTcount: A:0.16, C:0.14, G:0.16, T:0.55
Consensus pattern (13 bp):
TCTGTTATCTGTA
Found at i:80468985 original size:27 final size:27
Alignment explanation
Indices: 80468933--80468987 Score: 67
Period size: 27 Copynumber: 2.0 Consensus size: 27
80468923 TATTGTTCTG
* *
80468933 GTGGCTTTGCCACGTATTCTGATATTA
1 GTGGCTATGCCACGTATTCCGATATTA
*
80468960 GTGGCTATGCCACGT-TTACCGCTATTA
1 GTGGCTATGCCACGTATT-CCGATATTA
80468987 G
1 G
80468988 CAACTTTGCT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 2 0.08
27 22 0.92
ACGTcount: A:0.18, C:0.22, G:0.24, T:0.36
Consensus pattern (27 bp):
GTGGCTATGCCACGTATTCCGATATTA
Found at i:80469036 original size:23 final size:23
Alignment explanation
Indices: 80468981--80469038 Score: 89
Period size: 23 Copynumber: 2.5 Consensus size: 23
80468971 ACGTTTACCG
* *
80468981 CTATTAGCAACTTTGCTGCGTTA
1 CTATTAGCAGCTTTGCTGCATTA
*
80469004 CTATTAGCAGCTTTGTTGCATTA
1 CTATTAGCAGCTTTGCTGCATTA
80469027 CTATTAGCAGCT
1 CTATTAGCAGCT
80469039 ACACTGCGAT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 32 1.00
ACGTcount: A:0.22, C:0.21, G:0.17, T:0.40
Consensus pattern (23 bp):
CTATTAGCAGCTTTGCTGCATTA
Found at i:80480756 original size:9 final size:9
Alignment explanation
Indices: 80480742--80480779 Score: 58
Period size: 9 Copynumber: 4.1 Consensus size: 9
80480732 TATGCTCTTC
80480742 TCTTTTTTT
1 TCTTTTTTT
80480751 TCTTTTTTT
1 TCTTTTTTT
*
80480760 TCTTTTAATT
1 TCTTTT-TTT
80480770 TCTTTTTTT
1 TCTTTTTTT
80480779 T
1 T
80480780 TCACGAGCAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
9 18 0.69
10 8 0.31
ACGTcount: A:0.05, C:0.11, G:0.00, T:0.84
Consensus pattern (9 bp):
TCTTTTTTT
Found at i:80480759 original size:10 final size:10
Alignment explanation
Indices: 80480739--80480781 Score: 52
Period size: 10 Copynumber: 4.3 Consensus size: 10
80480729 ACATATGCTC
80480739 TTCTCTTTTTT
1 TTCT-TTTTTT
80480750 TTC-TTTTTT
1 TTCTTTTTTT
**
80480759 TTCTTTTAAT
1 TTCTTTTTTT
80480769 TTCTTTTTTT
1 TTCTTTTTTT
80480779 TTC
1 TTC
80480782 ACGAGCATTT
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
9 9 0.33
10 15 0.56
11 3 0.11
ACGTcount: A:0.05, C:0.14, G:0.00, T:0.81
Consensus pattern (10 bp):
TTCTTTTTTT
Found at i:80482466 original size:48 final size:48
Alignment explanation
Indices: 80482390--80482520 Score: 163
Period size: 48 Copynumber: 2.7 Consensus size: 48
80482380 CATTGGGGAA
* **
80482390 TACATTGATTTGGCTTCGGGCCACGATATCGGCACATCAGGTGCAAGT
1 TACATTGATTTGGCTTCGGGCCATGATATCGGCACATCAGGAACAAGT
** * *
80482438 TACATTGATTTGGCTTCGGGCCATGATATCGAAACTTCGGGAACAAGT
1 TACATTGATTTGGCTTCGGGCCATGATATCGGCACATCAGGAACAAGT
* * * *
80482486 TACATTAATTTGGTTTCGAGCCATGATATTGGCAC
1 TACATTGATTTGGCTTCGGGCCATGATATCGGCAC
80482521 TTAGGGTGTG
Statistics
Matches: 70, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
48 70 1.00
ACGTcount: A:0.25, C:0.20, G:0.24, T:0.31
Consensus pattern (48 bp):
TACATTGATTTGGCTTCGGGCCATGATATCGGCACATCAGGAACAAGT
Found at i:80487668 original size:34 final size:34
Alignment explanation
Indices: 80487604--80487669 Score: 96
Period size: 34 Copynumber: 1.9 Consensus size: 34
80487594 CGTCGCTGAA
*
80487604 AATCACAAACTCTTTTCCCCACTCAGGTTGCACT
1 AATCACAAACTCTTTTCCCCACTCAAGTTGCACT
** *
80487638 AATCACAAACTCTTTTCCTGACTTAAGTTGCA
1 AATCACAAACTCTTTTCCCCACTCAAGTTGCA
80487670 TTAACACTGG
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
34 28 1.00
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (34 bp):
AATCACAAACTCTTTTCCCCACTCAAGTTGCACT
Found at i:80497826 original size:15 final size:15
Alignment explanation
Indices: 80497808--80497837 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
80497798 TTTCTGAGGA
*
80497808 TCAATCCTAATTCCC
1 TCAATCCTAAGTCCC
80497823 TCAATCCTAAGTCCC
1 TCAATCCTAAGTCCC
80497838 AGAAAATTAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.27, C:0.40, G:0.03, T:0.30
Consensus pattern (15 bp):
TCAATCCTAAGTCCC
Found at i:80510232 original size:31 final size:31
Alignment explanation
Indices: 80510194--80510260 Score: 134
Period size: 31 Copynumber: 2.2 Consensus size: 31
80510184 ATTCTAAGAA
80510194 CTATCAACTCAGATACATAGCTCGGCCAAAT
1 CTATCAACTCAGATACATAGCTCGGCCAAAT
80510225 CTATCAACTCAGATACATAGCTCGGCCAAAT
1 CTATCAACTCAGATACATAGCTCGGCCAAAT
80510256 CTATC
1 CTATC
80510261 GAATGATATA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 36 1.00
ACGTcount: A:0.34, C:0.30, G:0.12, T:0.24
Consensus pattern (31 bp):
CTATCAACTCAGATACATAGCTCGGCCAAAT
Found at i:80512458 original size:37 final size:37
Alignment explanation
Indices: 80512403--80512505 Score: 179
Period size: 37 Copynumber: 2.8 Consensus size: 37
80512393 CGAATAGTCC
* *
80512403 CCACTCGTAGTTATCGGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
*
80512440 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
80512477 CCACACGTAGTCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
80512506 ATATATTTCC
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 63 1.00
ACGTcount: A:0.23, C:0.32, G:0.20, T:0.24
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:80512704 original size:48 final size:48
Alignment explanation
Indices: 80512646--80513054 Score: 710
Period size: 48 Copynumber: 8.5 Consensus size: 48
80512636 ATATACACAC
* * *
80512646 ATCTCCTACATATTTCACATTAGCCATTCGGCTTTACCAAATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
80512694 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
80512742 ATCTCATACATATTTCACACTAGCCATTCGACTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
80512790 ATCTCATACATATTTCACATTAGCCATACGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
80512838 ATCTCATAGATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
80512886 ATCTCATATATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
80512934 ATCTCATATATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * *
80512982 ATCTCATATATATTTCACACTAGCCATACGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
80513030 ATCTCATACATATTTCACACTAGCC
1 ATCTCATACATATTTCACACTAGCC
80513055 GAAAGCTTTA
Statistics
Matches: 347, Mismatches: 14, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 347 1.00
ACGTcount: A:0.32, C:0.28, G:0.06, T:0.34
Consensus pattern (48 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
Found at i:80517406 original size:40 final size:40
Alignment explanation
Indices: 80517355--80517583 Score: 395
Period size: 40 Copynumber: 5.7 Consensus size: 40
80517345 GCTACTTGCT
*
80517355 CAAATGCCTTCGGGACTTAGCCCAGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
80517395 CAAATGCCTTCGAGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* *
80517435 CAAATACCTTTGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
80517475 CAAATACCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
80517515 CAAATGCCTTCAGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
80517555 CAATTGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
80517584 CATCCGAATA
Statistics
Matches: 179, Mismatches: 10, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 179 1.00
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:80519705 original size:39 final size:40
Alignment explanation
Indices: 80519604--80519865 Score: 328
Period size: 39 Copynumber: 6.7 Consensus size: 40
80519594 TTGAATGATG
*
80519604 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
80519643 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
80519684 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
80519723 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
80519762 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
80519801 TCCGGGTTAAGTCCCGAAGGCATTTGGTGC--GTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTT-GTGCGAGATACTAAT
* *
80519839 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
80519866 AACGAGGAGC
Statistics
Matches: 204, Mismatches: 10, Indels: 18
0.88 0.04 0.08
Matches are distributed among these distances:
38 2 0.01
39 141 0.69
40 43 0.21
41 17 0.08
42 1 0.00
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:80524313 original size:39 final size:40
Alignment explanation
Indices: 80524218--80524478 Score: 328
Period size: 39 Copynumber: 6.7 Consensus size: 40
80524208 TTGAATGATG
*
80524218 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
80524256 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
80524297 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
80524336 TCCGGGCTAAG--CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
80524374 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
80524413 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
80524452 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
80524479 AACGAGGAGC
Statistics
Matches: 201, Mismatches: 11, Indels: 19
0.87 0.05 0.08
Matches are distributed among these distances:
38 38 0.19
39 92 0.46
40 59 0.29
41 11 0.05
42 1 0.00
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:80524367 original size:77 final size:79
Alignment explanation
Indices: 80524218--80524478 Score: 333
Period size: 77 Copynumber: 3.3 Consensus size: 79
80524208 TTGAATGATG
* *
80524218 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AATATCCGGACTAAGATCCGAAGGCA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT-TCCGGGCTAAG-TCCGAAGGCA
80524279 TTTGTGCGAGATACTAAT
62 TTTGTGCGAGATACTAAT
80524297 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAG-CCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGTCCGAAGGCATTTG
80524360 TGCGAGATACTAAT
66 TGCGAGATACTAAT
* * *
80524374 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGT-CCGAAGGCATTT
80524438 GTGCGA-ATTACT-AT
65 GTGCGAGA-TACTAAT
* *
80524452 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
80524479 AACGAGGAGC
Statistics
Matches: 166, Mismatches: 7, Indels: 17
0.87 0.04 0.09
Matches are distributed among these distances:
77 74 0.45
78 12 0.07
79 54 0.33
80 25 0.15
81 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (79 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGTCCGAAGGCATTTG
TGCGAGATACTAAT
Found at i:80528610 original size:40 final size:40
Alignment explanation
Indices: 80528566--80528793 Score: 332
Period size: 40 Copynumber: 5.7 Consensus size: 40
80528556 CTACTTGCTT
* * *
80528566 AAATGCCTTCGGGACTTAGCCCAGATATAGTAACTCGTAC
1 AAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCAC
*
80528606 AAATGCCTTCGAGACTTAGCCCGGTTATAGTAACTCGCAC
1 AAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCAC
* *
80528646 AAATACCTTCGGGACTTAGCCCGGTTATAGTAACTCACAC
1 AAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCAC
*
80528686 AAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTTGCAC
1 AAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCAC
* * * * *
80528726 AATTGCCTTCGGGACTTAGCCCGG-AATTGGTCACTAGCAC
1 AAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCAC
80528766 AAATGCCTTCGGGACTTAGCCCGGTTAT
1 AAATGCCTTCGGGACTTAGCCCGGTTAT
80528794 CATCTGAATA
Statistics
Matches: 169, Mismatches: 17, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 167 0.99
41 1 0.01
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (40 bp):
AAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCAC
Found at i:80531427 original size:46 final size:46
Alignment explanation
Indices: 80531207--80531428 Score: 211
Period size: 46 Copynumber: 4.7 Consensus size: 46
80531197 CACGTATCAA
** * *
80531207 GCCGATGCCATGTCTTAGACATGGTCTTACACTAGCTTTCACAATGTG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTTTCACAATATG
* * * *
80531255 GCTGATGCATGTCCCAGACATGTCTTACACTAGC--ACACATATCTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTTCACA-ATAT---G
*
80531303 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTTGTCTCAA-A--
1 GCCGATGCATGTCCCAGACATGTCTTACACTGG--CTT-TCACAATATG
* *
80531349 GCCGATGCATGTCCCAGACATGTCTTATACTGGCTTTCGCAATATG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTTCACAATATG
* *
80531395 GCGGATGCATGTCCCAGACATGTCTTCCACTGGC
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGC
80531429 GCACATATCA
Statistics
Matches: 147, Mismatches: 15, Indels: 26
0.78 0.08 0.14
Matches are distributed among these distances:
43 5 0.03
44 8 0.05
45 3 0.02
46 76 0.52
47 12 0.08
48 38 0.26
50 1 0.01
52 1 0.01
53 3 0.02
ACGTcount: A:0.23, C:0.28, G:0.21, T:0.28
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTTCACAATATG
Found at i:80538640 original size:33 final size:33
Alignment explanation
Indices: 80538595--80538661 Score: 107
Period size: 33 Copynumber: 2.0 Consensus size: 33
80538585 AAATCATTGA
*
80538595 AAGAATAGGGCCAGTAGCATATCGGCTAACTTT
1 AAGAATAAGGCCAGTAGCATATCGGCTAACTTT
* *
80538628 AAGAATAAGGCCAGTAGTATATCGGCTAGCTTT
1 AAGAATAAGGCCAGTAGCATATCGGCTAACTTT
80538661 A
1 A
80538662 CTGTCAGAGT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.34, C:0.16, G:0.24, T:0.25
Consensus pattern (33 bp):
AAGAATAAGGCCAGTAGCATATCGGCTAACTTT
Found at i:80540198 original size:48 final size:48
Alignment explanation
Indices: 80540137--80540279 Score: 223
Period size: 48 Copynumber: 3.0 Consensus size: 48
80540127 CATTAGGGAA
* * *
80540137 TACATTGATTTGGCTTCGGGCCATGATATTGACACATCGGGTGCGAGT
1 TACATTGATTTGGCTTCGGGCCATGATATTGGCACTTAGGGTGCGAGT
* * * *
80540185 TACATTAACTTGGCTTCGGTCCATGATATCGGCACTTAGGGTGCGAGT
1 TACATTGATTTGGCTTCGGGCCATGATATTGGCACTTAGGGTGCGAGT
80540233 TACATTGATTTGGCTTCGGGCCATGATATTGGCACTTAGGGTGCGAG
1 TACATTGATTTGGCTTCGGGCCATGATATTGGCACTTAGGGTGCGAG
80540280 ACTCCCGACT
Statistics
Matches: 84, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
48 84 1.00
ACGTcount: A:0.20, C:0.19, G:0.29, T:0.31
Consensus pattern (48 bp):
TACATTGATTTGGCTTCGGGCCATGATATTGGCACTTAGGGTGCGAGT
Found at i:80543902 original size:30 final size:30
Alignment explanation
Indices: 80543868--80543929 Score: 88
Period size: 30 Copynumber: 2.1 Consensus size: 30
80543858 TCCTTAACTC
80543868 AAACTTTGGCAAAATTACAATTTTGCCCCT
1 AAACTTTGGCAAAATTACAATTTTGCCCCT
* * * *
80543898 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGCAAAATTACAATTTTGCCCCT
80543928 AA
1 AA
80543930 GCTCGGGAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.31, C:0.24, G:0.08, T:0.37
Consensus pattern (30 bp):
AAACTTTGGCAAAATTACAATTTTGCCCCT
Found at i:80547652 original size:25 final size:25
Alignment explanation
Indices: 80547611--80547680 Score: 86
Period size: 25 Copynumber: 2.8 Consensus size: 25
80547601 CTCTTTTAAT
* *
80547611 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTAGGGCAAAGCCCTTTTCGATA
* * *
80547636 AAGTAGGGCAAAACCCTTTTCGGTA
1 AACTAGGGCAAAGCCCTTTTCGATA
*
80547661 AACTAGGGCATAGCCCTTTT
1 AACTAGGGCAAAGCCCTTTT
80547681 AGCACTTCCT
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
25 37 1.00
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (25 bp):
AACTAGGGCAAAGCCCTTTTCGATA
Found at i:80548588 original size:27 final size:27
Alignment explanation
Indices: 80548488--80548571 Score: 125
Period size: 27 Copynumber: 3.1 Consensus size: 27
80548478 GGGCATATTC
* * *
80548488 GTCATTTTACCATACA-GGGCTACTACG
1 GTCACTTTACCCTACAGGGGCT-TTACG
80548515 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCACTTTACCCTACAGGGGCTTTACG
80548542 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCACTTTACCCTACAGGGGCTTTACG
80548569 GTC
1 GTC
80548572 TTTTTACCTA
Statistics
Matches: 53, Mismatches: 3, Indels: 2
0.91 0.05 0.03
Matches are distributed among these distances:
27 48 0.91
28 5 0.09
ACGTcount: A:0.20, C:0.29, G:0.21, T:0.30
Consensus pattern (27 bp):
GTCACTTTACCCTACAGGGGCTTTACG
Found at i:80548663 original size:27 final size:27
Alignment explanation
Indices: 80548611--80548969 Score: 246
Period size: 27 Copynumber: 13.3 Consensus size: 27
80548601 TTCATCCTAC
* * * *
80548611 AAGGGTGTTTTGGTAAATCTACAAACT
1 AAGGGTATTTTGGTAATTTTATAAACT
** * *
80548638 AAGGGTATTTCAGTAATTTTGTAAACC
1 AAGGGTATTTTGGTAATTTTATAAACT
* * * *
80548665 AATGGTATTTCT-ATAATTTTTAGAAAGT
1 AAGGGTATTT-TGGTAA-TTTTATAAACT
* * *
80548693 CAAGAGTATTTCT-GTAACTTTGTAAA-T
1 -AAGGGTATTT-TGGTAATTTTATAAACT
* *
80548720 CAGGGGTATTTTGGTAATTTTATAAATT
1 -AAGGGTATTTTGGTAATTTTATAAACT
* ** * *
80548748 GAGGGTATTTCAGTAATTTCACAAAC-
1 AAGGGTATTTTGGTAATTTTATAAACT
* *
80548774 CAGTGGTATTTTGGTAATTTTACAAACT
1 AAG-GGTATTTTGGTAATTTTATAAACT
* *
80548802 AGGGGTATTTTGGTAATTTTACAAACT
1 AAGGGTATTTTGGTAATTTTATAAACT
* * *
80548829 AGGGGTATTTTGGTAATTTTACAAACC
1 AAGGGTATTTTGGTAATTTTATAAACT
* * * * *
80548856 AGGGGTATTTTAGCAATTTTACAGACT
1 AAGGGTATTTTGGTAATTTTATAAACT
* *
80548883 -AGGGTATTTTGGTAATTTTACTGATC-
1 AAGGGTATTTTGGTAATTTTA-TAAACT
*
80548909 GAGGGTATTTTGGTAATTTTATAAACT
1 AAGGGTATTTTGGTAATTTTATAAACT
* *
80548936 AAGGGTATTTTAGTAATTTTGTAAA-T
1 AAGGGTATTTTGGTAATTTTATAAACT
80548962 CAAGGGTA
1 -AAGGGTA
80548970 AAATAGTAAT
Statistics
Matches: 266, Mismatches: 55, Indels: 22
0.78 0.16 0.06
Matches are distributed among these distances:
26 24 0.09
27 214 0.80
28 15 0.06
29 13 0.05
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.40
Consensus pattern (27 bp):
AAGGGTATTTTGGTAATTTTATAAACT
Found at i:80548817 original size:81 final size:80
Alignment explanation
Indices: 80548721--80548955 Score: 296
Period size: 81 Copynumber: 2.9 Consensus size: 80
80548711 TTTGTAAATC
** *
80548721 AGGGGTATTTTGGTAATTTTATAAATTGAGGGTATTTCAGTAATTTCACAAACCAGTGGTATTTT
1 AGGGGTATTTTGGTAATTTTATAAATTGAGGGTATTTTGGTAATTTTACAAACCAG-GGTATTTT
*
80548786 GGTAATTTTACAAACT
65 AGTAATTTTACAAACT
* *
80548802 AGGGGTATTTTGGTAATTTTACAAACT-AGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTT
1 AGGGGTATTTTGGTAATTTTATAAATTGA-GGGTATTTTGGTAATTTTACAAACCA-GGGTATTT
* *
80548866 TAGCAATTTTACAGACT
64 TAGTAATTTTACAAACT
* * * *
80548883 A-GGGTATTTTGGTAATTTTACT-GATCGAGGGTATTTTGGTAATTTTATAAACTAAGGGTATTT
1 AGGGGTATTTTGGTAATTTTA-TAAATTGAGGGTATTTTGGTAATTTTACAAAC-CAGGGTATTT
80548946 TAGTAATTTT
64 TAGTAATTTT
80548956 GTAAATCAAG
Statistics
Matches: 134, Mismatches: 15, Indels: 11
0.84 0.09 0.07
Matches are distributed among these distances:
80 61 0.46
81 72 0.54
82 1 0.01
ACGTcount: A:0.29, C:0.08, G:0.21, T:0.42
Consensus pattern (80 bp):
AGGGGTATTTTGGTAATTTTATAAATTGAGGGTATTTTGGTAATTTTACAAACCAGGGTATTTTA
GTAATTTTACAAACT
Found at i:80548976 original size:27 final size:27
Alignment explanation
Indices: 80548948--80549185 Score: 323
Period size: 27 Copynumber: 8.8 Consensus size: 27
80548938 GGGTATTTTA
* * *
80548948 GTAATTTTGTAAATCAAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAATG
* *
80548975 GTAATTCTGTAAATCAAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAATG
* * **
80549002 ATAATTCTATAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAATG
* * *
80549029 ATAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAATG
*
80549056 GTAATTCTGTAAGTCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
*
80549083 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
*
80549110 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAATG
*
80549137 GTAATTCTGTAAGTCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
*
80549164 GTAATTCTATAAATCGAGGGTA
1 GTAATTCTGTAAATCGAGGGTA
80549186 CTTTGGTAAT
Statistics
Matches: 193, Mismatches: 18, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 193 1.00
ACGTcount: A:0.40, C:0.08, G:0.22, T:0.29
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAATG
Found at i:80549196 original size:81 final size:81
Alignment explanation
Indices: 80548946--80549185 Score: 372
Period size: 81 Copynumber: 3.0 Consensus size: 81
80548936 AAGGGTATTT
* * ** * * **
80548946 TAGTAATTTTGTAAATCAAGGGTAAAATAGTAATTCTGTAAATCAAGGGTAAAATAATAATTCTA
1 TAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAGTCGAGGGTAAAATGGTAATTCTA
80549011 TAAATCGAGGGTAAAA
66 TAAATCGAGGGTAAAA
* * *
80549027 CAATAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAGTCGAGGGTAAAATGGTAATTCTA
1 TAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAGTCGAGGGTAAAATGGTAATTCTA
80549092 TAAATCGAGGGTAAAA
66 TAAATCGAGGGTAAAA
*
80549108 TGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAGTCGAGGGTAAAATGGTAATTCTA
1 TAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAGTCGAGGGTAAAATGGTAATTCTA
80549173 TAAATCGAGGGTA
66 TAAATCGAGGGTA
80549186 CTTTGGTAAT
Statistics
Matches: 144, Mismatches: 15, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
81 144 1.00
ACGTcount: A:0.40, C:0.08, G:0.22, T:0.29
Consensus pattern (81 bp):
TAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAGTCGAGGGTAAAATGGTAATTCTA
TAAATCGAGGGTAAAA
Found at i:80552558 original size:37 final size:37
Alignment explanation
Indices: 80552505--80552607 Score: 170
Period size: 37 Copynumber: 2.8 Consensus size: 37
80552495 CGAATAGTCC
*
80552505 CCACACGTAGTTATCGGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
* *
80552542 CCACACGTAGTCATCGGGTCTTACCCAGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
*
80552579 CCAGACGTAGTCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
80552608 ATATATTTCC
Statistics
Matches: 61, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 61 1.00
ACGTcount: A:0.25, C:0.31, G:0.20, T:0.23
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:80552834 original size:48 final size:48
Alignment explanation
Indices: 80552780--80552896 Score: 216
Period size: 48 Copynumber: 2.4 Consensus size: 48
80552770 GCCGAATCAC
* *
80552780 TAGCCATTCGACTTTACCGCATATACATATCTCATACATATTTCACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
80552828 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
80552876 TAGCCATTCGGCTTTACCACA
1 TAGCCATTCGGCTTTACCACA
80552897 CACATATATA
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
48 67 1.00
ACGTcount: A:0.30, C:0.28, G:0.08, T:0.34
Consensus pattern (48 bp):
TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
Found at i:80560637 original size:40 final size:40
Alignment explanation
Indices: 80560563--80560746 Score: 207
Period size: 40 Copynumber: 4.7 Consensus size: 40
80560553 GCTACTCGTT
* *
80560563 CAAATGCCTTC-GGACATAGCCCGG-TTATACTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* *
80560602 CAATTGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
80560642 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
80560681 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
80560722 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
80560747 CATCATTCAA
Statistics
Matches: 123, Mismatches: 16, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
38 2 0.02
39 43 0.35
40 65 0.53
41 13 0.11
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:80560662 original size:79 final size:80
Alignment explanation
Indices: 80560563--80560746 Score: 205
Period size: 79 Copynumber: 2.3 Consensus size: 80
80560553 GCTACTCGTT
* * * *
80560563 CAAATGCCTTCGGACATAGCCCGG-TTATACTAACTCGCACAATTGCCTTCGGGA-CTTAACCCG
1 CAAATGCCTTCGGGCTTAGCCCGGAAT-TACTAACTCGCACAAATGCCTTC-GGATCTTAACCCG
* *
80560626 GATTTAGTAAC-TCGCA
64 GATATAGTAACTTAGCA
* * **
80560642 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTACTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
* *
80560707 TATGGTCACTTAGCA
66 TATAGTAACTTAGCA
80560722 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGG-CTTAGCCCGGA
80560747 CATCATTCAA
Statistics
Matches: 89, Mismatches: 12, Indels: 7
0.82 0.11 0.06
Matches are distributed among these distances:
78 3 0.03
79 66 0.74
80 20 0.22
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (80 bp):
CAAATGCCTTCGGGCTTAGCCCGGAATTACTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCA
Found at i:80568605 original size:79 final size:82
Alignment explanation
Indices: 80568494--80568678 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
80568484 GCTACTCGTT
* * *
80568494 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
80568557 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
80568574 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
80568637 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
80568654 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
80568679 CATCATTCAA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:80568678 original size:40 final size:40
Alignment explanation
Indices: 80568475--80568678 Score: 229
Period size: 40 Copynumber: 5.1 Consensus size: 40
80568465 CGGAATTTAA
** *
80568475 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
80568515 CCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
80568555 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
80568594 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
80568634 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
80568674 CCGGA
1 CCGGA
80568679 CATCATTCAA
Statistics
Matches: 139, Mismatches: 18, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.24
40 92 0.66
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:80570704 original size:49 final size:49
Alignment explanation
Indices: 80570647--80570746 Score: 164
Period size: 49 Copynumber: 2.0 Consensus size: 49
80570637 CTCAAACAGC
* *
80570647 ATCTTTCTTCTTCGGAGTCAAAGGTAATCAAGTTACGAAATCCATCGTA
1 ATCTTTCTTCTTCGGAGTCAAAGGTAAGCAAGTTACGAAATCCATCATA
* *
80570696 ATCTTTCTTCTTTGGAGTCAAAGGTAAGCTAGTTACGAAATCCATCATA
1 ATCTTTCTTCTTCGGAGTCAAAGGTAAGCAAGTTACGAAATCCATCATA
80570745 AT
1 AT
80570747 TCTGTCTCAT
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
49 47 1.00
ACGTcount: A:0.31, C:0.19, G:0.16, T:0.34
Consensus pattern (49 bp):
ATCTTTCTTCTTCGGAGTCAAAGGTAAGCAAGTTACGAAATCCATCATA
Found at i:80572304 original size:46 final size:46
Alignment explanation
Indices: 80572254--80572429 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
80572244 TGGTTGAGCA
80572254 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
80572300 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
80572345 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
80572393 CCCGAGCTCGTTGAGTTGAGTCTGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
80572430 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 62 0.56
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:80572410 original size:93 final size:93
Alignment explanation
Indices: 80572251--80572422 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
80572241 GGATGGTTGA
* *
80572251 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
80572316 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
80572344 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
*
80572409 TGAGTCTGAGTTCG
66 TGAGTCCGAGTTCG
80572423 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:80577339 original size:42 final size:42
Alignment explanation
Indices: 80577292--80577383 Score: 148
Period size: 42 Copynumber: 2.2 Consensus size: 42
80577282 TGGCCCTTAG
* ** *
80577292 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
80577334 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
80577376 GCCCATTT
1 GCCCATTT
80577384 GGGGAGACTA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.35, C:0.22, G:0.14, T:0.29
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
Found at i:80577559 original size:25 final size:25
Alignment explanation
Indices: 80577531--80577600 Score: 106
Period size: 25 Copynumber: 2.8 Consensus size: 25
80577521 CTCTTTTAAT
*
80577531 AACTGGGGCAAAGCCC-TTTCTGATA
1 AACTGGGGCAGAGCCCTTTTC-GATA
*
80577556 AACTGGGGCAGAGCCCTTTTCGGTA
1 AACTGGGGCAGAGCCCTTTTCGATA
80577581 AACTGGGGCAGAGCCCTTTT
1 AACTGGGGCAGAGCCCTTTT
80577601 AGCACTTCCT
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
25 38 0.90
26 4 0.10
ACGTcount: A:0.23, C:0.24, G:0.29, T:0.24
Consensus pattern (25 bp):
AACTGGGGCAGAGCCCTTTTCGATA
Found at i:80578465 original size:28 final size:27
Alignment explanation
Indices: 80578403--80578467 Score: 76
Period size: 27 Copynumber: 2.4 Consensus size: 27
80578393 GGCGTATTCA
80578403 TCATTTTACCATACAAGGGTATTACGG
1 TCATTTTACCATACAAGGGTATTACGG
* * * *
80578430 TCACTTTACCCTACAGGGGCTTTTACGG
1 TCATTTTACCATACAAGGG-TATTACGG
*
80578458 TCTTTTTACC
1 TCATTTTACC
80578468 TATTAGGGGT
Statistics
Matches: 31, Mismatches: 6, Indels: 1
0.82 0.16 0.03
Matches are distributed among these distances:
27 16 0.52
28 15 0.48
ACGTcount: A:0.22, C:0.25, G:0.17, T:0.37
Consensus pattern (27 bp):
TCATTTTACCATACAAGGGTATTACGG
Found at i:80578551 original size:27 final size:27
Alignment explanation
Indices: 80578525--80578655 Score: 102
Period size: 27 Copynumber: 4.7 Consensus size: 27
80578515 ATCTACAAAC
* *
80578525 CAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTCAGTAATTTTATAAAT
* * *
80578552 CAATGGTATTCCTA-TAATTTTAAAAAAAGT
1 CAAGGGTATTTC-AGTAATTTT--ATAAA-T
* *
80578582 CAAGGGTATTTCTGTAATTTTGTAAAT
1 CAAGGGTATTTCAGTAATTTTATAAAT
* ** *
80578609 CAGGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTCAGTAATTTTATAAAT
* *
80578636 TAAGGGTATTTCGGTAATTT
1 CAAGGGTATTTCAGTAATTT
80578656 CTCAAACTAG
Statistics
Matches: 81, Mismatches: 18, Indels: 10
0.74 0.17 0.09
Matches are distributed among these distances:
27 57 0.70
28 4 0.05
29 3 0.04
30 17 0.21
ACGTcount: A:0.33, C:0.08, G:0.18, T:0.40
Consensus pattern (27 bp):
CAAGGGTATTTCAGTAATTTTATAAAT
Found at i:80578627 original size:57 final size:53
Alignment explanation
Indices: 80578506--80578681 Score: 149
Period size: 54 Copynumber: 3.2 Consensus size: 53
80578496 TACAAGGGTG
* * * * *
80578506 TTTTGGTAAATCTACAAACCAAGGGTATTTCAGTAATTTTGTAAACCAATGGTA
1 TTTTGGTAATTTTAAAAATCAAGGGTATTTCAGTAATTTTGTAAA-CAGTGGTA
* * * *
80578560 TTCCT-ATAATTTTAAAAAAAGTCAAGGGTATTTCTGTAATTTTGTAAATCAGGGGTA
1 TT-TTGGTAATTTT--AAAAA-TCAAGGGTATTTCAGTAATTTTGTAAA-CAGTGGTA
* * * *
80578617 TTTTGGTAATTTTACAAATTAAGGGTATTTCGGTAATTTCT-CAAACTAGTGGTA
1 TTTTGGTAATTTTAAAAATCAAGGGTATTTCAGTAATTT-TGTAAAC-AGTGGTA
80578671 TTTTGGTAATT
1 TTTTGGTAATT
80578682 CTATCCTACA
Statistics
Matches: 98, Mismatches: 17, Indels: 14
0.76 0.13 0.11
Matches are distributed among these distances:
53 1 0.01
54 46 0.47
55 6 0.06
56 5 0.05
57 40 0.41
ACGTcount: A:0.32, C:0.10, G:0.18, T:0.40
Consensus pattern (53 bp):
TTTTGGTAATTTTAAAAATCAAGGGTATTTCAGTAATTTTGTAAACAGTGGTA
Found at i:80578661 original size:27 final size:27
Alignment explanation
Indices: 80578583--80578681 Score: 94
Period size: 27 Copynumber: 3.7 Consensus size: 27
80578573 AAAAAAAGTC
* ** *
80578583 AAGGGTATTTCTGTAATTTTGTAAATC
1 AAGGGTATTTCGGTAATTTTACAAATT
* *
80578610 AGGGGTATTTTGGTAATTTTACAAATT
1 AAGGGTATTTCGGTAATTTTACAAATT
*
80578637 AAGGGTATTTCGGTAATTTCT-CAAACT
1 AAGGGTATTTCGGTAATTT-TACAAATT
*
80578664 -AGTGGTATTTTGGTAATT
1 AAG-GGTATTTCGGTAATT
80578682 CTATCCTACA
Statistics
Matches: 60, Mismatches: 10, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
26 2 0.03
27 57 0.95
28 1 0.02
ACGTcount: A:0.28, C:0.07, G:0.21, T:0.43
Consensus pattern (27 bp):
AAGGGTATTTCGGTAATTTTACAAATT
Found at i:80579112 original size:27 final size:27
Alignment explanation
Indices: 80578713--80579101 Score: 519
Period size: 27 Copynumber: 14.4 Consensus size: 27
80578703 ATAATTTCAC
* * * *
80578713 AATCGAGGGTAAAACGATAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTCTATA
* *
80578740 AA-CTGAGGGTAAAATGGTAATTTTGTA
1 AATC-GAGGGTAAAATGGTAATTCTATA
* * *
80578767 AATCGAGGGTAAAACGATAATTTTATA
1 AATCGAGGGTAAAATGGTAATTCTATA
***
80578794 AATCGAGGGTACTTTGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTATA
*
80578821 AATCGAGGGTAAAATGGTAATTCTGTA
1 AATCGAGGGTAAAATGGTAATTCTATA
* * *
80578848 AATCGAGGGTAAAACGATAATTCCATA
1 AATCGAGGGTAAAATGGTAATTCTATA
80578875 AATCGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTATA
* * *
80578902 AATCAAGGGTAAAATGATAATTTTATA
1 AATCGAGGGTAAAATGGTAATTCTATA
*
80578929 AATCGAGGATAAAATGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTATA
80578956 AATCGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTATA
*
80578983 AATCGAGGGTAAAATTGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTATA
* * *
80579010 AATCGAGGGTAAAACGATAATTTTATA
1 AATCGAGGGTAAAATGGTAATTCTATA
*
80579037 AATTGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTATA
* *
80579064 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAATGGTAATTCTATA
80579091 AATCGAGGGTA
1 AATCGAGGGTA
80579102 CTTTGGTAAT
Statistics
Matches: 318, Mismatches: 42, Indels: 4
0.87 0.12 0.01
Matches are distributed among these distances:
26 1 0.00
27 316 0.99
28 1 0.00
ACGTcount: A:0.41, C:0.08, G:0.22, T:0.30
Consensus pattern (27 bp):
AATCGAGGGTAAAATGGTAATTCTATA
Found at i:80581449 original size:31 final size:31
Alignment explanation
Indices: 80581407--80581573 Score: 289
Period size: 31 Copynumber: 5.4 Consensus size: 31
80581397 CGGTTACTGA
80581407 GCCGAAGCCTTTTCATAAATCATATCACTCG
1 GCCGAAGCCTTTTCATAAATCATATCACTCG
* *
80581438 GCCAAAGCCTTTTCATAAATCATATCACTGG
1 GCCGAAGCCTTTTCATAAATCATATCACTCG
*
80581469 GCCGAAGCCTTTTCATAAATCATATCACTGG
1 GCCGAAGCCTTTTCATAAATCATATCACTCG
80581500 GCCGAAGCCTTTTCATAAATCATATCACTCG
1 GCCGAAGCCTTTTCATAAATCATATCACTCG
*
80581531 GCCGAAGCCTTTTCATAAATCATATCACTAG
1 GCCGAAGCCTTTTCATAAATCATATCACTCG
*
80581562 GCCGAAACCTTT
1 GCCGAAGCCTTT
80581574 ACTGTAAACG
Statistics
Matches: 130, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 130 1.00
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.29
Consensus pattern (31 bp):
GCCGAAGCCTTTTCATAAATCATATCACTCG
Found at i:80581649 original size:42 final size:42
Alignment explanation
Indices: 80581597--80581688 Score: 139
Period size: 42 Copynumber: 2.2 Consensus size: 42
80581587 TGGCCCTTAG
* * ** *
80581597 GCCCTTTTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
80581639 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
80581681 GCCCATTT
1 GCCCATTT
80581689 GGGGAGACTA
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.34, C:0.22, G:0.14, T:0.30
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
Found at i:80581864 original size:25 final size:25
Alignment explanation
Indices: 80581836--80581905 Score: 97
Period size: 25 Copynumber: 2.8 Consensus size: 25
80581826 CTCTTTTAAT
*
80581836 AACTGGGGCAAAGCCC-TTTCTGATA
1 AACTGGGGCAGAGCCCTTTTC-GATA
* *
80581861 AACTGAGGCAGAGCCCTTTTCGGTA
1 AACTGGGGCAGAGCCCTTTTCGATA
80581886 AACTGGGGCAGAGCCCTTTT
1 AACTGGGGCAGAGCCCTTTT
80581906 AGCACTTCTT
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
25 36 0.90
26 4 0.10
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.24
Consensus pattern (25 bp):
AACTGGGGCAGAGCCCTTTTCGATA
Found at i:80582769 original size:27 final size:27
Alignment explanation
Indices: 80582708--80582771 Score: 76
Period size: 27 Copynumber: 2.4 Consensus size: 27
80582698 GGCGTATTCA
80582708 TCATTTTACCATACAAGGGTATTACGG
1 TCATTTTACCATACAAGGGTATTACGG
* * *
80582735 TCACTTTACCCTACAGGGGCT-TTACGG
1 TCATTTTACCATACAAGGG-TATTACGG
*
80582762 TCTTTTTACC
1 TCATTTTACC
80582772 TATTAGGGGT
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 30 0.97
28 1 0.03
ACGTcount: A:0.22, C:0.25, G:0.17, T:0.36
Consensus pattern (27 bp):
TCATTTTACCATACAAGGGTATTACGG
Found at i:80582855 original size:27 final size:27
Alignment explanation
Indices: 80582829--80582959 Score: 104
Period size: 27 Copynumber: 4.7 Consensus size: 27
80582819 ATCTACAAAC
*
80582829 CAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTCAGTAATTTTGTAAAT
* *
80582856 CAATGGTATTCCTA-TAATTTTAAAG-AAAGT
1 CAAGGGTATTTC-AGTAATTTT---GTAAA-T
*
80582886 CAAGGGTATTTCTGTAATTTTGTAAAT
1 CAAGGGTATTTCAGTAATTTTGTAAAT
* ** **
80582913 CAGGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTCAGTAATTTTGTAAAT
* *
80582940 TAAGGGTATTTCGGTAATTT
1 CAAGGGTATTTCAGTAATTT
80582960 CTCAAACTAG
Statistics
Matches: 83, Mismatches: 14, Indels: 14
0.75 0.13 0.13
Matches are distributed among these distances:
27 58 0.70
28 4 0.05
29 3 0.04
30 18 0.22
ACGTcount: A:0.32, C:0.08, G:0.19, T:0.40
Consensus pattern (27 bp):
CAAGGGTATTTCAGTAATTTTGTAAAT
Found at i:80582931 original size:57 final size:53
Alignment explanation
Indices: 80582810--80582985 Score: 158
Period size: 54 Copynumber: 3.2 Consensus size: 53
80582800 TACAAGGGTG
* * * *
80582810 TTTTGGTAAATCTACAAACCAAGGGTATTTCAGTAATTTTGTAAACCAATGGTA
1 TTTTGGTAATTTTACAAATCAAGGGTATTTCAGTAATTTTGTAAA-CAGTGGTA
* * * * *
80582864 TTCCT-ATAATTTTAAAGAAAGTCAAGGGTATTTCTGTAATTTTGTAAATCAGGGGTA
1 TT-TTGGTAATTTT--ACAAA-TCAAGGGTATTTCAGTAATTTTGTAAA-CAGTGGTA
* * *
80582921 TTTTGGTAATTTTACAAATTAAGGGTATTTCGGTAATTTCT-CAAACTAGTGGTA
1 TTTTGGTAATTTTACAAATCAAGGGTATTTCAGTAATTT-TGTAAAC-AGTGGTA
80582975 TTTTGGTAATT
1 TTTTGGTAATT
80582986 CTATCCTACA
Statistics
Matches: 98, Mismatches: 17, Indels: 14
0.76 0.13 0.11
Matches are distributed among these distances:
53 1 0.01
54 46 0.47
55 6 0.06
56 5 0.05
57 40 0.41
ACGTcount: A:0.32, C:0.10, G:0.18, T:0.40
Consensus pattern (53 bp):
TTTTGGTAATTTTACAAATCAAGGGTATTTCAGTAATTTTGTAAACAGTGGTA
Found at i:80582965 original size:27 final size:27
Alignment explanation
Indices: 80582887--80582985 Score: 94
Period size: 27 Copynumber: 3.7 Consensus size: 27
80582877 AAAGAAAGTC
* ** *
80582887 AAGGGTATTTCTGTAATTTTGTAAATC
1 AAGGGTATTTCGGTAATTTTACAAATT
* *
80582914 AGGGGTATTTTGGTAATTTTACAAATT
1 AAGGGTATTTCGGTAATTTTACAAATT
*
80582941 AAGGGTATTTCGGTAATTTCT-CAAACT
1 AAGGGTATTTCGGTAATTT-TACAAATT
*
80582968 -AGTGGTATTTTGGTAATT
1 AAG-GGTATTTCGGTAATT
80582986 CTATCCTACA
Statistics
Matches: 60, Mismatches: 10, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
26 2 0.03
27 57 0.95
28 1 0.02
ACGTcount: A:0.28, C:0.07, G:0.21, T:0.43
Consensus pattern (27 bp):
AAGGGTATTTCGGTAATTTTACAAATT
Found at i:80583443 original size:27 final size:27
Alignment explanation
Indices: 80583017--80583432 Score: 582
Period size: 27 Copynumber: 15.4 Consensus size: 27
80583007 ATAATTTCAC
* * * *
80583017 AATCGAGGGTAAAACGATAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTCTATA
* *
80583044 AA-CTGAGGGTAAAATGGTAATTTTGTA
1 AATC-GAGGGTAAAATGGTAATTCTATA
* * *
80583071 AATCGAGGGTAAAACGATAATTTTATA
1 AATCGAGGGTAAAATGGTAATTCTATA
***
80583098 AATCGAGGGTACTTTGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTATA
*
80583125 AATCGAGGGTAAAATGGTAATTCTGTA
1 AATCGAGGGTAAAATGGTAATTCTATA
**
80583152 AATCGAGGGTAAAACAGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTATA
*
80583179 AATTGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTATA
* *
80583206 AATCAAGGGTAAAATGGTAATTTTATA
1 AATCGAGGGTAAAATGGTAATTCTATA
* * *
80583233 AATCGAGGGTAAAACGATAATTTTATA
1 AATCGAGGGTAAAATGGTAATTCTATA
80583260 AATCGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTATA
80583287 AATCGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTATA
*
80583314 AATCGAGGGTAAAATTGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTATA
* *
80583341 AATCGAGGGTAAAACGGTAATTTTATA
1 AATCGAGGGTAAAATGGTAATTCTATA
80583368 AATCGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTATA
* *
80583395 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAATGGTAATTCTATA
80583422 AATCGAGGGTA
1 AATCGAGGGTA
80583433 CTTTGGTAAT
Statistics
Matches: 349, Mismatches: 38, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
26 1 0.00
27 347 0.99
28 1 0.00
ACGTcount: A:0.40, C:0.07, G:0.22, T:0.30
Consensus pattern (27 bp):
AATCGAGGGTAAAATGGTAATTCTATA
Found at i:80595104 original size:19 final size:20
Alignment explanation
Indices: 80595074--80595111 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
80595064 AAAGCACAAA
*
80595074 CCAAATCTGAAATTGAATCC
1 CCAAATCTGAAACTGAATCC
80595094 CCAAATC-GAAACTGAATC
1 CCAAATCTGAAACTGAATC
80595112 TAAAACCCCC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.42, C:0.26, G:0.11, T:0.21
Consensus pattern (20 bp):
CCAAATCTGAAACTGAATCC
Found at i:80603934 original size:48 final size:48
Alignment explanation
Indices: 80603862--80604132 Score: 220
Period size: 48 Copynumber: 5.8 Consensus size: 48
80603852 GAATTACCAC
* * *
80603862 TGCCATGTCCCAGACATGGTCTTACACGGGCTCACATGTCGAGGCCGA
1 TGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTCAAGGCCGA
* * * * *
80603910 TGCCATGTCCCAGACATGGCCTTACACTAGCTCTCGTCTCAATGCCGA
1 TGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTCAAGGCCGA
* * **
80603958 GGCCATGT-CCA-ACATGGTCTTACACTGGCTCACA-ATCAACACCGA
1 TGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTCAAGGCCGA
* * ** * * *
80604003 TGCCATGT-CCA-ACAAGGTCTTACAATGGCTCTTATAATCAATGCTGA
1 TGCCATGTCCCAGACATGGTCTTACACTGGCTCACAT-CTCAAGGCCGA
* * * *
80604050 TGCCATGT-CCA-ACATGGTCTTACACTAGCATACAAAATGT---GGCCAA
1 TGCCATGTCCCAGACATGGTCTTACACTGGC-T-C-ACATCTCAAGGCCGA
*
80604096 TGCCATGTCCCAGACATGGTCTTACACTAGCTCACAT
1 TGCCATGTCCCAGACATGGTCTTACACTGGCTCACAT
80604133 GTCACCCCAA
Statistics
Matches: 182, Mismatches: 34, Indels: 17
0.78 0.15 0.07
Matches are distributed among these distances:
45 40 0.22
46 31 0.17
47 41 0.23
48 66 0.36
49 2 0.01
50 2 0.01
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.24
Consensus pattern (48 bp):
TGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTCAAGGCCGA
Found at i:80604065 original size:92 final size:94
Alignment explanation
Indices: 80603862--80604075 Score: 254
Period size: 92 Copynumber: 2.3 Consensus size: 94
80603852 GAATTACCAC
* * * ** *
80603862 TGCCATGTCCCAGACATGGTCTTACACGGGCTCACATGTCGAGGCCGATGCCATGTCCCAGACAT
1 TGCCATGT-CCA-ACATGGTCTTACACTGGCTCACATATCAACACCGATGCCATGTCCCAGACAA
* * *
80603927 GGCCTTACACTAGCTCTCGTCTCAATGCCGA
64 GGCCTTACAATAGCTCTCATATCAATGCCGA
*
80603958 GGCCATGTCCAACATGGTCTTACACTGGCTCACA-ATCAACACCGATGCCATGT-CCA-ACAAGG
1 TGCCATGTCCAACATGGTCTTACACTGGCTCACATATCAACACCGATGCCATGTCCCAGACAAGG
* * * *
80604020 TCTTACAATGGCTCTTATAATCAATGCTGA
66 CCTTACAATAGCTCTCAT-ATCAATGCCGA
80604050 TGCCATGTCCAACATGGTCTTACACT
1 TGCCATGTCCAACATGGTCTTACACT
80604076 AGCATACAAA
Statistics
Matches: 102, Mismatches: 15, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
91 18 0.18
92 37 0.36
93 15 0.15
94 22 0.22
95 3 0.03
96 7 0.07
ACGTcount: A:0.25, C:0.31, G:0.20, T:0.25
Consensus pattern (94 bp):
TGCCATGTCCAACATGGTCTTACACTGGCTCACATATCAACACCGATGCCATGTCCCAGACAAGG
CCTTACAATAGCTCTCATATCAATGCCGA
Found at i:80615001 original size:26 final size:26
Alignment explanation
Indices: 80614942--80615001 Score: 61
Period size: 26 Copynumber: 2.3 Consensus size: 26
80614932 AATGAGGATG
*
80614942 ATAAGA-AAACCCCAGATACAATCTC
1 ATAAGAGAAACCCCAGATACAAACTC
* * *
80614967 ACAACAGAAACCCGAGA-ACATAACTC
1 ATAAGAGAAACCCCAGATACA-AACTC
80614993 ATAAGAGAA
1 ATAAGAGAA
80615002 TAATAATGAA
Statistics
Matches: 27, Mismatches: 6, Indels: 3
0.75 0.17 0.08
Matches are distributed among these distances:
25 7 0.26
26 20 0.74
ACGTcount: A:0.52, C:0.25, G:0.12, T:0.12
Consensus pattern (26 bp):
ATAAGAGAAACCCCAGATACAAACTC
Found at i:80616590 original size:47 final size:50
Alignment explanation
Indices: 80616529--80616655 Score: 161
Period size: 50 Copynumber: 2.6 Consensus size: 50
80616519 TTACAATACA
* * *
80616529 ATGCCAATGTCCCAGACATGGTCTTACATTTA-A-TCACATATCGAGTC-G
1 ATGCC-ATGTCCCAGACATGGTCTTACACTGACACTCACATATCGAGGCTG
**
80616577 ATGCCATGTCCCAGACATGGTCTTACACTGACACTCTTATATCGAGGCTG
1 ATGCCATGTCCCAGACATGGTCTTACACTGACACTCACATATCGAGGCTG
* *
80616627 ATGCCATATCCCAAACATGGTCTTACACT
1 ATGCCATGTCCCAGACATGGTCTTACACT
80616656 AGCTTTCCTC
Statistics
Matches: 69, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
47 24 0.35
48 6 0.09
49 11 0.16
50 28 0.41
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.28
Consensus pattern (50 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGACACTCACATATCGAGGCTG
Found at i:80616649 original size:50 final size:51
Alignment explanation
Indices: 80616566--80616709 Score: 165
Period size: 50 Copynumber: 2.9 Consensus size: 51
80616556 ATTTAATCAC
* *
80616566 ATATCGAGTC-GATGCCATGTCCCAGACATGGTCTTACACT-GAC-ACTCTT
1 ATATCGAGGCTGATGCCATGTCCCAAACATGGTCTTACACTAG-CTACTCTT
* *
80616615 ATATCGAGGCTGATGCCATATCCCAAACATGGTCTTACACTAGCTTTCCTCTT
1 ATATCGAGGCTGATGCCATGTCCCAAACATGGTCTTACACTAGC--TACTCTT
* *
80616668 -T-TCG-TGCTGATGACATGTCCCAAACATGGTCTTACACTAGCT
1 ATATCGAGGCTGATGCCATGTCCCAAACATGGTCTTACACTAGCT
80616710 CACATGTATT
Statistics
Matches: 83, Mismatches: 7, Indels: 11
0.82 0.07 0.11
Matches are distributed among these distances:
48 1 0.01
49 9 0.11
50 63 0.76
51 4 0.05
52 1 0.01
53 5 0.06
ACGTcount: A:0.24, C:0.28, G:0.17, T:0.31
Consensus pattern (51 bp):
ATATCGAGGCTGATGCCATGTCCCAAACATGGTCTTACACTAGCTACTCTT
Found at i:80618977 original size:120 final size:119
Alignment explanation
Indices: 80618755--80619017 Score: 316
Period size: 120 Copynumber: 2.2 Consensus size: 119
80618745 TCCTCGTTCA
* * **
80618755 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACTTAACCCGGATT
1 AATGCCTTCGGGACTTAGCCCGGATTTAACAACTCACACAATGCCTTCGGGACTTAACCCGGATT
* * * *
80618820 TAACAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTA-ACAAC-TCGCAC
66 TAACAACTCGCACAAAGGCCTTCGGGACTTAACCCGGATATATAC-ACTTAGCAC
* *
80618873 GAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACGAATGCCTTCGGGACTTAACCCGGA
1 -AATGCCTTCGGGACTTAGCCCGGATTTAACAACTCACAC-AATGCCTTCGGGACTTAACCCGGA
** * ** *
80618938 TTTAGTATCTCGCACAAAGGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
64 TTTAACAACTCGCACAAAGGCCTTCGGGA-CTTAACCCGGATATATACACTTAGCAC
*
80618994 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
80619018 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 18, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
119 36 0.30
120 80 0.66
121 6 0.05
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (119 bp):
AATGCCTTCGGGACTTAGCCCGGATTTAACAACTCACACAATGCCTTCGGGACTTAACCCGGATT
TAACAACTCGCACAAAGGCCTTCGGGACTTAACCCGGATATATACACTTAGCAC
Found at i:80618978 original size:40 final size:40
Alignment explanation
Indices: 80618755--80618964 Score: 314
Period size: 40 Copynumber: 5.3 Consensus size: 40
80618745 TCCTCGTTCA
* * * ** *
80618755 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
80618794 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
80618834 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
80618874 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
** * *
80618914 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
*
80618954 AAGGCCTTCGG
1 AATGCCTTCGG
80618965 ATCTTAGTCC
Statistics
Matches: 159, Mismatches: 11, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 33 0.21
40 126 0.79
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
Found at i:80619001 original size:80 final size:80
Alignment explanation
Indices: 80618758--80619017 Score: 267
Period size: 80 Copynumber: 3.3 Consensus size: 80
80618748 TCGTTCAAAT
* * * ** * * *
80618758 GCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-AATGCCTTCGGGACTTAACCCGGATTTA
1 GCCTTCGGGACTTAACCCGGATTTAACAACTCGCACAAAGGCCTTCGGGACTTAACCCGGATATA
* *
80618822 ACAACTCGCACGAAT
66 ACAACTAGCACGAAA
* * *
80618837 GCCTTCGGGACTTAACCCGGATTTAACAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTA
1 GCCTTCGGGACTTAACCCGGATTTAACAACTCGCACAAAGGCCTTCGGGACTTAACCCGGATATA
* *
80618902 ACAACTCGCACGAAT
66 ACAACTAGCACGAAA
** * **
80618917 GCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTC-GGATCTTAGTCCGGATAT
1 GCCTTCGGGACTTAACCCGGATTTAACAACTCGCACAAAGGCCTTCGGGA-CTTAACCCGGATAT
*
80618981 ATTC-ACTTAGCAC-AAA
65 A-ACAAC-TAGCACGAAA
*
80618997 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAACCCGGA
80619018 CAGCATTCAA
Statistics
Matches: 159, Mismatches: 18, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
79 33 0.21
80 120 0.75
81 6 0.04
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (80 bp):
GCCTTCGGGACTTAACCCGGATTTAACAACTCGCACAAAGGCCTTCGGGACTTAACCCGGATATA
ACAACTAGCACGAAA
Found at i:80619026 original size:41 final size:41
Alignment explanation
Indices: 80618949--80619026 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
80618939 TTAGTATCTC
* * *
80618949 GCACAAAGGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
80618990 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAAGGCCTTC-GGATCTTAGCCCGGACA-CATTCA
80619027 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (41 bp):
GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:80626910 original size:120 final size:119
Alignment explanation
Indices: 80626688--80626950 Score: 316
Period size: 120 Copynumber: 2.2 Consensus size: 119
80626678 TCCTCGTTCA
* * **
80626688 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACTTAACCCGGATT
1 AATGCCTTCGGGACTTAGCCCGGATTTAACAACTCACACAATGCCTTCGGGACTTAACCCGGATT
* * * *
80626753 TAACAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTA-ACAAC-TCGCAC
66 TAACAACTCGCACAAAGGCCTTCGGGACTTAACCCGGATATATAC-ACTTAGCAC
* *
80626806 GAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACGAATGCCTTCGGGACTTAACCCGGA
1 -AATGCCTTCGGGACTTAGCCCGGATTTAACAACTCACAC-AATGCCTTCGGGACTTAACCCGGA
** * ** *
80626871 TTTAGTATCTCGCACAAAGGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
64 TTTAACAACTCGCACAAAGGCCTTCGGGA-CTTAACCCGGATATATACACTTAGCAC
*
80626927 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
80626951 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 18, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
119 36 0.30
120 80 0.66
121 6 0.05
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (119 bp):
AATGCCTTCGGGACTTAGCCCGGATTTAACAACTCACACAATGCCTTCGGGACTTAACCCGGATT
TAACAACTCGCACAAAGGCCTTCGGGACTTAACCCGGATATATACACTTAGCAC
Found at i:80626911 original size:40 final size:40
Alignment explanation
Indices: 80626688--80626897 Score: 314
Period size: 40 Copynumber: 5.3 Consensus size: 40
80626678 TCCTCGTTCA
* * * ** *
80626688 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
80626727 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
80626767 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
80626807 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
** * *
80626847 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
*
80626887 AAGGCCTTCGG
1 AATGCCTTCGG
80626898 ATCTTAGTCC
Statistics
Matches: 159, Mismatches: 11, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 33 0.21
40 126 0.79
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
Found at i:80626934 original size:80 final size:80
Alignment explanation
Indices: 80626691--80626950 Score: 267
Period size: 80 Copynumber: 3.3 Consensus size: 80
80626681 TCGTTCAAAT
* * * ** * * *
80626691 GCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-AATGCCTTCGGGACTTAACCCGGATTTA
1 GCCTTCGGGACTTAACCCGGATTTAACAACTCGCACAAAGGCCTTCGGGACTTAACCCGGATATA
* *
80626755 ACAACTCGCACGAAT
66 ACAACTAGCACGAAA
* * *
80626770 GCCTTCGGGACTTAACCCGGATTTAACAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTA
1 GCCTTCGGGACTTAACCCGGATTTAACAACTCGCACAAAGGCCTTCGGGACTTAACCCGGATATA
* *
80626835 ACAACTCGCACGAAT
66 ACAACTAGCACGAAA
** * **
80626850 GCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTC-GGATCTTAGTCCGGATAT
1 GCCTTCGGGACTTAACCCGGATTTAACAACTCGCACAAAGGCCTTCGGGA-CTTAACCCGGATAT
*
80626914 ATTC-ACTTAGCAC-AAA
65 A-ACAAC-TAGCACGAAA
*
80626930 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAACCCGGA
80626951 CAGCATTCAA
Statistics
Matches: 159, Mismatches: 18, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
79 33 0.21
80 120 0.75
81 6 0.04
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (80 bp):
GCCTTCGGGACTTAACCCGGATTTAACAACTCGCACAAAGGCCTTCGGGACTTAACCCGGATATA
ACAACTAGCACGAAA
Found at i:80626959 original size:41 final size:41
Alignment explanation
Indices: 80626882--80626959 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
80626872 TTAGTATCTC
* * *
80626882 GCACAAAGGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
80626923 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAAGGCCTTC-GGATCTTAGCCCGGACA-CATTCA
80626960 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (41 bp):
GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:80630564 original size:40 final size:39
Alignment explanation
Indices: 80630520--80630603 Score: 105
Period size: 40 Copynumber: 2.1 Consensus size: 39
80630510 TATATATATA
**
80630520 TAGCCAAAGCTATCTCAAATTGCACACCAAGTGCCACTTT
1 TAGCCAAAGCTATCTCAAACCGCACACCAAGTGCCA-TTT
* * * *
80630560 TAGCCGAAGCTATTTCGAACCGCACACTAAGTGCCATTT
1 TAGCCAAAGCTATCTCAAACCGCACACCAAGTGCCATTT
80630599 TAGCC
1 TAGCC
80630604 GATAAGTCGT
Statistics
Matches: 38, Mismatches: 6, Indels: 1
0.84 0.13 0.02
Matches are distributed among these distances:
39 8 0.21
40 30 0.79
ACGTcount: A:0.30, C:0.30, G:0.15, T:0.25
Consensus pattern (39 bp):
TAGCCAAAGCTATCTCAAACCGCACACCAAGTGCCATTT
Found at i:80630832 original size:11 final size:11
Alignment explanation
Indices: 80630816--80630854 Score: 53
Period size: 11 Copynumber: 3.5 Consensus size: 11
80630806 AGATATTTCA
80630816 ATTCATATTTT
1 ATTCATATTTT
*
80630827 ATTCAT-TTTAA
1 ATTCATATTT-T
80630838 ATTCATATTTT
1 ATTCATATTTT
80630849 ATTCAT
1 ATTCAT
80630855 TTTAACTCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
10 3 0.12
11 18 0.75
12 3 0.12
ACGTcount: A:0.31, C:0.10, G:0.00, T:0.59
Consensus pattern (11 bp):
ATTCATATTTT
Found at i:80630841 original size:22 final size:22
Alignment explanation
Indices: 80630815--80630859 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
80630805 CAGATATTTC
80630815 AATTCATATTTTATTCATTTTA
1 AATTCATATTTTATTCATTTTA
80630837 AATTCATATTTTATTCATTTTA
1 AATTCATATTTTATTCATTTTA
80630859 A
1 A
80630860 CTCAATTTCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.33, C:0.09, G:0.00, T:0.58
Consensus pattern (22 bp):
AATTCATATTTTATTCATTTTA
Found at i:80630869 original size:27 final size:24
Alignment explanation
Indices: 80630813--80630875 Score: 85
Period size: 22 Copynumber: 2.6 Consensus size: 24
80630803 TTCAGATATT
80630813 TCAATTCATATTTTATTCATTTTA
1 TCAATTCATATTTTATTCATTTTA
80630837 --AATTCATATTTTATTCATTTTAA
1 TCAATTCATATTTTATTCATTTT-A
80630860 CTCAATTTCATATTTT
1 -TCAA-TTCATATTTT
80630876 GGTAAAATTA
Statistics
Matches: 34, Mismatches: 0, Indels: 7
0.83 0.00 0.17
Matches are distributed among these distances:
22 21 0.62
23 1 0.03
26 2 0.06
27 10 0.29
ACGTcount: A:0.30, C:0.13, G:0.00, T:0.57
Consensus pattern (24 bp):
TCAATTCATATTTTATTCATTTTA
Found at i:80632181 original size:48 final size:46
Alignment explanation
Indices: 80632110--80632376 Score: 218
Period size: 48 Copynumber: 5.7 Consensus size: 46
80632100 TACTGATGTT
* * **
80632110 ATGTCCCAGACATGGTCTTACACTGGCTCACATGTTGAGGCCGATGCC
1 ATGT-CCA-ACATGGTCTTACACTAGCTCACATATCAAGGCCGATGCC
* * * * * * *
80632158 ATGTCCCAGACATGGCCTTACACTAGCTCTCGTCTCAATGCCAAGGCC
1 ATGT-CCA-ACATGGTCTTACACTAGCTCACATATCAAGGCCGATGCC
** *
80632206 ATGTCCAACATGGTCTTACACT-GACTCACA-ATCAACACAGATGCC
1 ATGTCCAACATGGTCTTACACTAG-CTCACATATCAAGGCCGATGCC
* * * *
80632251 ATGTCCAACATGGTCTTACACTGGCTCTCATAATCAATGTCGATGCC
1 ATGTCCAACATGGTCTTACACTAGCTCACAT-ATCAAGGCCGATGCC
* ** *
80632298 ATGTCCAACATGGTCTTACACTAGCAT-ACAAAAT-GTGGCCAATGCC
1 ATGTCCAACATGGTCTTACACTAGC-TCAC-ATATCAAGGCCGATGCC
80632344 ATGTCCCAGACATGGTCTTACACTAGCTCACAT
1 ATGT-CCA-ACATGGTCTTACACTAGCTCACAT
80632377 GTCACCCCAA
Statistics
Matches: 177, Mismatches: 33, Indels: 19
0.77 0.14 0.08
Matches are distributed among these distances:
45 37 0.21
46 30 0.17
47 46 0.26
48 64 0.36
ACGTcount: A:0.27, C:0.30, G:0.18, T:0.25
Consensus pattern (46 bp):
ATGTCCAACATGGTCTTACACTAGCTCACATATCAAGGCCGATGCC
Found at i:80632261 original size:45 final size:47
Alignment explanation
Indices: 80632203--80632319 Score: 168
Period size: 47 Copynumber: 2.5 Consensus size: 47
80632193 CAATGCCAAG
80632203 GCCATGTCCAACATGGTCTTACACT-G-ACTCACAATCAA-CACAGAT
1 GCCATGTCCAACATGGTCTTACACTGGCACTCACAATCAATCAC-GAT
* * **
80632248 GCCATGTCCAACATGGTCTTACACTGGCTCTCATAATCAATGTCGAT
1 GCCATGTCCAACATGGTCTTACACTGGCACTCACAATCAATCACGAT
80632295 GCCATGTCCAACATGGTCTTACACT
1 GCCATGTCCAACATGGTCTTACACT
80632320 AGCATACAAA
Statistics
Matches: 65, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
45 25 0.38
46 1 0.02
47 38 0.58
48 1 0.02
ACGTcount: A:0.28, C:0.30, G:0.15, T:0.26
Consensus pattern (47 bp):
GCCATGTCCAACATGGTCTTACACTGGCACTCACAATCAATCACGAT
Found at i:80633546 original size:54 final size:54
Alignment explanation
Indices: 80633464--80633570 Score: 205
Period size: 54 Copynumber: 2.0 Consensus size: 54
80633454 CCCTCGTAAC
80633464 ATGCTCTATCCATTTCTACCCATATTTCAAGCTAGGGTTCATGTTAGAAATTTT
1 ATGCTCTATCCATTTCTACCCATATTTCAAGCTAGGGTTCATGTTAGAAATTTT
*
80633518 ATGCTCTATCTATTTCTACCCATATTTCAAGCTAGGGTTCATGTTAGAAATTT
1 ATGCTCTATCCATTTCTACCCATATTTCAAGCTAGGGTTCATGTTAGAAATTT
80633571 GAACCAGGCA
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 52 1.00
ACGTcount: A:0.26, C:0.20, G:0.13, T:0.41
Consensus pattern (54 bp):
ATGCTCTATCCATTTCTACCCATATTTCAAGCTAGGGTTCATGTTAGAAATTTT
Found at i:80635157 original size:30 final size:29
Alignment explanation
Indices: 80635123--80635184 Score: 115
Period size: 30 Copynumber: 2.1 Consensus size: 29
80635113 TCATGAGATA
80635123 TGATGATGAGGTTTATCATGACTGGATGAT
1 TGATGATGAGGTTTATCATGA-TGGATGAT
80635153 TGATGATGAGGTTTATCATGATGGATGAT
1 TGATGATGAGGTTTATCATGATGGATGAT
80635182 TGA
1 TGA
80635185 AATGGAACCT
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
29 11 0.34
30 21 0.66
ACGTcount: A:0.27, C:0.05, G:0.31, T:0.37
Consensus pattern (29 bp):
TGATGATGAGGTTTATCATGATGGATGAT
Found at i:80651400 original size:35 final size:35
Alignment explanation
Indices: 80651360--80651433 Score: 148
Period size: 35 Copynumber: 2.1 Consensus size: 35
80651350 AGGTAAAATG
80651360 ATAACATGGTTTGAGTTGGTTATAATATGATATGT
1 ATAACATGGTTTGAGTTGGTTATAATATGATATGT
80651395 ATAACATGGTTTGAGTTGGTTATAATATGATATGT
1 ATAACATGGTTTGAGTTGGTTATAATATGATATGT
80651430 ATAA
1 ATAA
80651434 GACTTGGTTA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 39 1.00
ACGTcount: A:0.34, C:0.03, G:0.22, T:0.42
Consensus pattern (35 bp):
ATAACATGGTTTGAGTTGGTTATAATATGATATGT
Found at i:80654337 original size:27 final size:28
Alignment explanation
Indices: 80654296--80654362 Score: 77
Period size: 27 Copynumber: 2.4 Consensus size: 28
80654286 AACACCATTT
*
80654296 AAAA-ATAATAGAAAATATAAATT-T-TA
1 AAAATATAATATAAAATA-AAATTATATA
80654322 AAAATATAATATAAAATAAAATTATATA
1 AAAATATAATATAAAATAAAATTATATA
*
80654350 AATAATTTAATAT
1 AA-AATATAATAT
80654363 TTGCAAAAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
26 9 0.26
27 13 0.37
28 4 0.11
29 9 0.26
ACGTcount: A:0.64, C:0.00, G:0.01, T:0.34
Consensus pattern (28 bp):
AAAATATAATATAAAATAAAATTATATA
Found at i:80654942 original size:14 final size:14
Alignment explanation
Indices: 80654907--80654944 Score: 67
Period size: 14 Copynumber: 2.7 Consensus size: 14
80654897 TGTTTCACTA
*
80654907 AAAATGACTTCTGG
1 AAAATGATTTCTGG
80654921 AAAATGATTTCTGG
1 AAAATGATTTCTGG
80654935 AAAATGATTT
1 AAAATGATTT
80654945 ACTTTTCTGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.39, C:0.08, G:0.18, T:0.34
Consensus pattern (14 bp):
AAAATGATTTCTGG
Found at i:80655518 original size:15 final size:15
Alignment explanation
Indices: 80655490--80655531 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
80655480 TATGTGAATA
80655490 ATATTATTTAAAATT
1 ATATTATTTAAAATT
* *
80655505 ATATTGTTTTAAATT
1 ATATTATTTAAAATT
80655520 -TATTA-TTAAAAT
1 ATATTATTTAAAAT
80655532 AAAATTACAA
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
13 6 0.26
14 4 0.17
15 13 0.57
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (15 bp):
ATATTATTTAAAATT
Found at i:80655579 original size:22 final size:22
Alignment explanation
Indices: 80655535--80655594 Score: 61
Period size: 22 Copynumber: 2.8 Consensus size: 22
80655525 TTAAAATAAA
* *
80655535 ATTACAATATTAAA-TA-ATTT
1 ATTAAAATAATAAATTATATTT
80655555 ATTAAAATAATAAATTATATTT
1 ATTAAAATAATAAATTATATTT
* * *
80655577 ATTATATTAATAATTTAT
1 ATTAAAATAATAAATTAT
80655595 TATATGACTA
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
20 12 0.36
21 2 0.06
22 19 0.58
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (22 bp):
ATTAAAATAATAAATTATATTT
Found at i:80655580 original size:34 final size:32
Alignment explanation
Indices: 80655498--80655580 Score: 80
Period size: 31 Copynumber: 2.5 Consensus size: 32
80655488 TAATATTATT
* *
80655498 TAAAATTATATTGTTTTAAATTTATTATTAAAA
1 TAAAATTATATT-TATTAAATATATTATTAAAA
* *
80655531 TAAAATTACA-ATATTAAATA-ATTTATTAAAA
1 TAAAATTATATTTATTAAATATA-TTATTAAAA
80655562 TAATAAATTATATTTATTA
1 T-A-AAATTATATTTATTA
80655581 TATTAATAAT
Statistics
Matches: 40, Mismatches: 6, Indels: 7
0.75 0.11 0.13
Matches are distributed among these distances:
30 1 0.03
31 17 0.43
32 1 0.03
33 16 0.40
34 5 0.12
ACGTcount: A:0.51, C:0.01, G:0.01, T:0.47
Consensus pattern (32 bp):
TAAAATTATATTTATTAAATATATTATTAAAA
Done.